BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023638
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EIZ|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
Adenosylmethionine
pdb|1EJ0|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
Adenosylmethionine, Mercury Derivative
Length = 180
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 73 PSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAA 127
P T D PG S V I G+ A D++P P+ VD + G + A
Sbjct: 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVG-VDFLQGDFRDELVMKAL 80
Query: 128 VDAVPDKNSADVVNDNG-NTSAD-AVDVPSKM 157
++ V D V++D N S AVD+P M
Sbjct: 81 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAM 112
>pdb|2ATF|A Chain A, X-Ray Structure Of Cysteine Dioxygenase Type I From Mus
Musculus Mm.241056
pdb|2Q4S|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Cysteine Dioxygenase Type I From Mus Musculus Mm.241056
Length = 200
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 28 KFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDW 68
KF++ I C +H+H F KLL G + +DW
Sbjct: 69 KFNLXILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDW 109
>pdb|3NBV|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With Amp-Pnp
And Fructose
pdb|3NBV|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With Amp-Pnp
And Fructose
pdb|3NBW|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrazole Compound
pdb|3NBW|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrazole Compound
pdb|3NC2|A Chain A, X-Ray Structure Of Ketohexokinase With A Quinazoline
pdb|3NC2|B Chain B, X-Ray Structure Of Ketohexokinase With A Quinazoline
pdb|3NC9|A Chain A, X-Ray Structure Of Ketohexokinase Complexed With An
Indazole Compound
pdb|3NC9|B Chain B, X-Ray Structure Of Ketohexokinase Complexed With An
Indazole Compound
pdb|3NCA|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A Thieno
Pyridinol Compound
pdb|3NCA|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A Thieno
Pyridinol Compound
pdb|3RO4|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With An
Indazole Compound Derivative
pdb|3RO4|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With An
Indazole Compound Derivative
pdb|3Q92|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 1
pdb|3Q92|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 1
pdb|3QA2|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 2
pdb|3QA2|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 2
pdb|3QAI|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 3
pdb|3QAI|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 3
Length = 313
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 13/84 (15%)
Query: 192 YPADGGNMHCFT--------AVTACAVLDVLGPPYSDSEGRHCTYYQDFPFANFSVDGAS 243
YP + + C + A +C VL +LG P + + DF A+F G
Sbjct: 38 YPKEDSEIRCLSQRWQRGGNASNSCTVLSLLGAPCAFMGSMAPGHVADFLVADFRRRGVD 97
Query: 244 VPEEEKEGHAWLQEGEKPKDLLVI 267
V + AW +G+ P +I
Sbjct: 98 VSQV-----AWQSKGDTPSSCCII 116
>pdb|3B3L|A Chain A, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|B Chain B, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|C Chain C, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|D Chain D, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
Length = 298
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 13/84 (15%)
Query: 192 YPADGGNMHCFT--------AVTACAVLDVLGPPYSDSEGRHCTYYQDFPFANFSVDGAS 243
YP + + C + A +C VL +LG P + + DF A+F G
Sbjct: 23 YPKEDSEIRCLSQRWQRGGNASNSCTVLSLLGAPCAFMGSMAPGHVADFLVADFRRRGVD 82
Query: 244 VPEEEKEGHAWLQEGEKPKDLLVI 267
V + AW +G+ P +I
Sbjct: 83 VSQV-----AWQSKGDTPSSCCII 101
>pdb|2B5H|A Chain A, 1.5 A Resolution Crystal Structure Of Recombinant R.
Norvegicus Cysteine Dioxygenase
pdb|2GH2|A Chain A, 1.5 A Resolution R. Norvegicus Cysteine Dioxygenase
Structure Crystallized In The Presence Of Cysteine
pdb|3ELN|A Chain A, A Putative Fe2+-Bound Persulfenate Intermediate In
Cysteine Dioxygenase
Length = 200
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 28 KFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDW 68
KF++ I C +H+H F KLL G + +DW
Sbjct: 69 KFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDW 109
>pdb|3U0K|A Chain A, Crystal Structure Of The Genetically Encoded Calcium
Indicator Rcamp
Length = 440
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 176 VKADSDLTAPCNTSILYPADGG 197
V+A L++ NT ++YPADGG
Sbjct: 50 VRAIGRLSSAINTEMMYPADGG 71
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 10/46 (21%)
Query: 231 DFPFANFSVDGASVPEEEKEGHAWLQEGEKPKDLLVIGSFYIGPEI 276
+F F+N +D L GE PK L+VIG YIG E+
Sbjct: 150 NFKFSNRILDSTGA----------LNLGEVPKSLVVIGGGYIGIEL 185
>pdb|1O6E|A Chain A, Epstein-Barr Virus Protease
pdb|1O6E|B Chain B, Epstein-Barr Virus Protease
Length = 235
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 110 KPLAAMVDVIPGKPLAAAVDAVPDKNSADVVNDNGNTSADAVDVPSKMSTDANPSETKK- 168
KPL V+ +P P+ + ++SA + + TS D + + + D + +++++
Sbjct: 40 KPLPLTVEHLPDAPVGSVFGLY--QSSAGLFSAASITSGDFLSLLDSIYHDCDIAQSQRL 97
Query: 169 PGVRLAKVKADSDLTAPCNTSILYP------ADGGNMHCFTAVTACAV 210
P R KV+A + + L+P ADGG + F V+ CA+
Sbjct: 98 PLPREPKVEALHAWLPSLSLASLHPDIPQTTADGGKLSFFDHVSICAL 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,188,193
Number of Sequences: 62578
Number of extensions: 396889
Number of successful extensions: 904
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 899
Number of HSP's gapped (non-prelim): 18
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)