Query 023638
Match_columns 279
No_of_seqs 123 out of 191
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 05:31:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023638.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023638hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4281 Uncharacterized conser 100.0 2.6E-70 5.7E-75 490.5 14.8 188 2-277 46-235 (236)
2 PF07847 DUF1637: Protein of u 100.0 4.9E-67 1.1E-71 461.2 17.9 182 3-276 15-200 (200)
3 PF05995 CDO_I: Cysteine dioxy 98.4 9E-07 1.9E-11 76.3 8.6 55 17-71 63-117 (175)
4 COG1917 Uncharacterized conser 96.1 0.011 2.3E-07 47.5 4.8 40 25-64 39-78 (131)
5 PRK13290 ectC L-ectoine syntha 95.8 0.096 2.1E-06 43.6 9.4 48 17-65 21-70 (125)
6 PF07883 Cupin_2: Cupin domain 94.3 0.023 4.9E-07 40.0 1.5 33 32-64 1-33 (71)
7 TIGR02451 anti_sig_ChrR anti-s 94.1 0.13 2.8E-06 46.1 6.2 45 16-61 113-158 (215)
8 TIGR03404 bicupin_oxalic bicup 94.0 0.086 1.9E-06 50.9 5.1 42 26-67 242-283 (367)
9 PF12973 Cupin_7: ChrR Cupin-l 93.2 0.13 2.8E-06 39.4 4.0 47 15-62 7-56 (91)
10 smart00835 Cupin_1 Cupin. This 92.5 0.21 4.5E-06 41.1 4.5 45 22-66 23-67 (146)
11 TIGR01479 GMP_PMI mannose-1-ph 91.8 1.7 3.6E-05 43.0 10.6 47 18-64 365-411 (468)
12 COG0662 {ManC} Mannose-6-phosp 84.0 2.9 6.2E-05 34.1 5.5 50 15-64 22-71 (127)
13 TIGR03214 ura-cupin putative a 79.8 2.9 6.3E-05 38.5 4.6 36 28-64 178-214 (260)
14 PRK15460 cpsB mannose-1-phosph 78.9 21 0.00046 36.1 10.6 47 18-64 374-420 (478)
15 TIGR03404 bicupin_oxalic bicup 76.8 3.9 8.4E-05 39.7 4.7 39 28-67 66-104 (367)
16 KOG4064 Cysteine dioxygenase C 66.8 2.6 5.7E-05 38.1 0.9 46 26-71 69-114 (196)
17 PF11699 CENP-C_C: Mif2/CENP-C 66.0 12 0.00026 29.7 4.4 47 19-65 2-48 (85)
18 COG5553 Predicted metal-depend 65.7 8.7 0.00019 35.0 4.0 41 25-66 69-109 (191)
19 PF01050 MannoseP_isomer: Mann 59.9 23 0.00051 30.5 5.5 48 18-65 52-99 (151)
20 PF00190 Cupin_1: Cupin; Inte 56.0 12 0.00026 30.7 2.9 42 25-67 30-71 (144)
21 PRK11171 hypothetical protein; 55.5 21 0.00045 33.0 4.7 37 28-64 183-219 (266)
22 PRK11171 hypothetical protein; 38.7 70 0.0015 29.5 5.4 40 26-65 58-98 (266)
23 TIGR03037 anthran_nbaC 3-hydro 38.2 82 0.0018 28.0 5.5 51 15-67 15-65 (159)
24 PLN00212 glutelin; Provisional 37.3 45 0.00098 34.3 4.2 41 26-66 345-385 (493)
25 TIGR01221 rmlC dTDP-4-dehydror 34.7 3.3E+02 0.0071 24.2 9.5 34 37-70 52-87 (176)
26 PRK04190 glucose-6-phosphate i 33.2 1.6E+02 0.0035 26.5 6.7 51 14-64 49-111 (191)
27 PF05523 FdtA: WxcM-like, C-te 33.1 61 0.0013 27.0 3.7 33 36-68 40-72 (131)
28 PRK13264 3-hydroxyanthranilate 29.5 1.5E+02 0.0033 26.9 5.8 52 14-67 20-71 (177)
29 PF11142 DUF2917: Protein of u 27.0 56 0.0012 24.4 2.3 31 33-65 1-31 (63)
30 COG2957 Peptidylarginine deimi 22.6 42 0.00091 33.3 1.1 25 181-208 321-345 (346)
31 PRK12335 tellurite resistance 22.5 61 0.0013 29.6 2.1 30 38-67 20-50 (287)
32 PRK10371 DNA-binding transcrip 22.3 1.3E+02 0.0028 27.8 4.2 40 26-66 23-62 (302)
33 TIGR03214 ura-cupin putative a 20.6 2E+02 0.0044 26.5 5.1 38 27-64 56-94 (260)
34 PF00970 FAD_binding_6: Oxidor 20.0 3.8E+02 0.0082 19.9 6.4 46 26-72 11-57 (99)
No 1
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.6e-70 Score=490.51 Aligned_cols=188 Identities=57% Similarity=1.073 Sum_probs=172.2
Q ss_pred CCCcccccc--cCCCCCCeEEEEeeccCCeEEEEEecCCCCcccCCCCCCCeeeeeeeecceEEEEeecccCCCCCCccc
Q 023638 2 PEQPYFRRQ--AGRKYPAITYQHIFECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDVPSDTSAD 79 (279)
Q Consensus 2 ~~~~~~~~~--~~~~~~pItY~~IyE~~~FSmgIF~LppGa~IPLHDHPgMtV~sKVLyGsl~VkSYDwv~~~~~~~~~~ 79 (279)
+++++||+. ..|..++|+|||||||+.|||||||||+|++||||||||||||||+|||+|||+||||+++++..+.
T Consensus 46 ~~~~~~~~~~~~~rn~ppitYlhi~EcD~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVksyDw~ePd~~~~~-- 123 (236)
T KOG4281|consen 46 PEMQYFRPSGVSERNLPPITYLHIHECDRFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKSYDWVEPDEPQTE-- 123 (236)
T ss_pred hhhhhccCCCCCcCCCCCceEEEEEecCceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeeeccccCCCCcccC--
Confidence 678899972 3466789999999999999999999999999999999999999999999999999999986554332
Q ss_pred ccCCCCcccccccccCCCccccccccccCCCCccceecccCCCccccccccCCCCCCcccccCCCCCcCcccccCCCCCC
Q 023638 80 AAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGKPLAAAVDAVPDKNSADVVNDNGNTSADAVDVPSKMST 159 (279)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~v~~~~~~ 159 (279)
T Consensus 124 -------------------------------------------------------------------------------- 123 (236)
T KOG4281|consen 124 -------------------------------------------------------------------------------- 123 (236)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCceeEeEEeecccccCCCCeEEeecCCCCCeeeeeecCceeEeEeeCCCCCCCCCCCCccceecCCCCccC
Q 023638 160 DANPSETKKPGVRLAKVKADSDLTAPCNTSILYPADGGNMHCFTAVTACAVLDVLGPPYSDSEGRHCTYYQDFPFANFSV 239 (279)
Q Consensus 160 ~~~p~~~~~~~~rlAk~~~d~~~ta~~~t~vLyP~~gGNlH~ftAvtpcA~LDVL~PPY~~~~gR~CtYY~~~p~~~~~~ 239 (279)
.|. ..+|+|||+.|.++|++|++++|||++|||+|||+|+|+|||||||+|||+.+.||+|+||+++++..++.
T Consensus 124 --dp~----q~~r~akl~~d~~~T~~s~~~~LyP~~ggn~h~f~a~t~cAvlDILsPPY~~~~gR~C~Yyr~~p~~~~~~ 197 (236)
T KOG4281|consen 124 --DPH----QPVRPAKLVSDKEFTAASPASTLYPKTGGNHHCFTAITPCAVLDILSPPYDSDHGRHCTYYRDYPFSSLSG 197 (236)
T ss_pred --CCC----cceeeeeEeccceecCCCCCcEeeecCCCcEeeeeeccceeEEeeccCCCCCCCCcCceEEeccCccccCC
Confidence 111 23899999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCccccCcceEEEeeCCCCCeEEeCeecCCCeee
Q 023638 240 DGASVPEEEKEGHAWLQEGEKPKDLLVIGSFYIGPEIV 277 (279)
Q Consensus 240 ~~~~~~~~~~~~~~wL~e~~~P~df~~~~~~Y~GP~i~ 277 (279)
+...++++++++++||+|+.+|+||+|.+++|+||.|.
T Consensus 198 ~~~~s~~~~~~~~~wL~E~~~~D~f~~~~~~Y~gp~i~ 235 (236)
T KOG4281|consen 198 DCVVSSEEEKEDVAWLEERQPPDDFVCRGEPYRGPKIR 235 (236)
T ss_pred ceeecCccccccceeeeccCCcccceEeccccCCCccC
Confidence 77778899999999999999999999999999999985
No 2
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=100.00 E-value=4.9e-67 Score=461.20 Aligned_cols=182 Identities=48% Similarity=0.966 Sum_probs=158.5
Q ss_pred CCcccc---cccCCCCCCeEEEEeeccCCeEEEEEecCCCCcccCCCCCCCeeeeeeeecceEEEEeecccCCCCCCccc
Q 023638 3 EQPYFR---RQAGRKYPAITYQHIFECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDVPSDTSAD 79 (279)
Q Consensus 3 ~~~~~~---~~~~~~~~pItY~~IyE~~~FSmgIF~LppGa~IPLHDHPgMtV~sKVLyGsl~VkSYDwv~~~~~~~~~~ 79 (279)
++.+++ .+..+..++|+|++||||++|||||||||+|++||||||||||||||||||++||+||||+++......
T Consensus 15 ~~~~~~~~~~~~~~~~~~i~y~~iyE~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~-- 92 (200)
T PF07847_consen 15 SLQFFRAPSNRSSPSSPPITYMHIYEDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIE-- 92 (200)
T ss_pred ccccccccccccCCCCCCeEEEEEEECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEcccccccccccc--
Confidence 455664 334577889999999999999999999999999999999999999999999999999999983221110
Q ss_pred ccCCCCcccccccccCCCccccccccccCCCCccceecccCCCccccccccCCCCCCcccccCCCCCcCcccccCCCCCC
Q 023638 80 AAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGKPLAAAVDAVPDKNSADVVNDNGNTSADAVDVPSKMST 159 (279)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~v~~~~~~ 159 (279)
T Consensus 93 -------------------------------------------------------------------------------- 92 (200)
T PF07847_consen 93 -------------------------------------------------------------------------------- 92 (200)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCceeEeEEeecccccCCCCeEEeecCCCCCeeeeeecC-ceeEeEeeCCCCCCCCCCCCccceecCCCCcc
Q 023638 160 DANPSETKKPGVRLAKVKADSDLTAPCNTSILYPADGGNMHCFTAVT-ACAVLDVLGPPYSDSEGRHCTYYQDFPFANFS 238 (279)
Q Consensus 160 ~~~p~~~~~~~~rlAk~~~d~~~ta~~~t~vLyP~~gGNlH~ftAvt-pcA~LDVL~PPY~~~~gR~CtYY~~~p~~~~~ 238 (279)
.....|+||++.|.+++|+|++++|||++|||||+|+|++ ||||||||+|||+.+.||+|+||++++....+
T Consensus 93 -------~~~~~~~a~~~~d~~~~a~~~~~vL~P~~ggNiH~f~a~~~p~AflDIL~PPY~~~~gR~C~YY~~~~~~~~~ 165 (200)
T PF07847_consen 93 -------GQRQPRLARLVVDGEMTAPSDTCVLYPTSGGNIHEFTALTGPCAFLDILAPPYDPDDGRDCTYYRPVPFSSSS 165 (200)
T ss_pred -------ccccceeeEEEecceecCCCCCeEEccCCCCeeEEEEeCCCCeEEEEEccCCCCCCCCCCcEEEeecCCcccc
Confidence 0124789999999999999999999999999999999999 99999999999999999999999999987643
Q ss_pred CCCCCCCccccCcceEEEeeCCCCCeEEeCeecCCCee
Q 023638 239 VDGASVPEEEKEGHAWLQEGEKPKDLLVIGSFYIGPEI 276 (279)
Q Consensus 239 ~~~~~~~~~~~~~~~wL~e~~~P~df~~~~~~Y~GP~i 276 (279)
....+++.++.+||+||++|+||||++++|+||+|
T Consensus 166 ---~~~~~~~~~~~~~L~ei~~P~df~~~~~~Y~GP~v 200 (200)
T PF07847_consen 166 ---EQLPSEQDEQYVWLEEIPPPDDFYCDSGPYRGPPV 200 (200)
T ss_pred ---cccccccCCCeEEEEEcCCCCCEEEeeeeeCCCCC
Confidence 23344556689999999999999999999999986
No 3
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=98.44 E-value=9e-07 Score=76.28 Aligned_cols=55 Identities=27% Similarity=0.516 Sum_probs=44.6
Q ss_pred CeEEEEeeccCCeEEEEEecCCCCcccCCCCCCCeeeeeeeecceEEEEeecccC
Q 023638 17 AITYQHIFECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVD 71 (279)
Q Consensus 17 pItY~~IyE~~~FSmgIF~LppGa~IPLHDHPgMtV~sKVLyGsl~VkSYDwv~~ 71 (279)
.=++--||.++.|++-++|-+||..-|+|||.+..++.+||.|.++-+-|.|.+.
T Consensus 63 ~Y~r~ll~~~~~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~ 117 (175)
T PF05995_consen 63 RYTRNLLYRDERFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDD 117 (175)
T ss_dssp SSEEEEEEGGCT-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTS
T ss_pred CCeEEEEecCCCeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCc
Confidence 4566677999999999999999999999999999999999999999999998754
No 4
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=96.06 E-value=0.011 Score=47.52 Aligned_cols=40 Identities=30% Similarity=0.409 Sum_probs=36.9
Q ss_pred ccCCeEEEEEecCCCCcccCCCCCCCeeeeeeeecceEEE
Q 023638 25 ECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIK 64 (279)
Q Consensus 25 E~~~FSmgIF~LppGa~IPLHDHPgMtV~sKVLyGsl~Vk 64 (279)
+...+.+..|.+.+|+++|.|.||......-||.|.+.+.
T Consensus 39 ~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~ 78 (131)
T COG1917 39 EGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQ 78 (131)
T ss_pred CCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEE
Confidence 5788999999999999999999998889999999999864
No 5
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=95.78 E-value=0.096 Score=43.57 Aligned_cols=48 Identities=10% Similarity=0.052 Sum_probs=37.4
Q ss_pred CeEEEEeeccC--CeEEEEEecCCCCcccCCCCCCCeeeeeeeecceEEEE
Q 023638 17 AITYQHIFECE--KFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKS 65 (279)
Q Consensus 17 pItY~~IyE~~--~FSmgIF~LppGa~IPLHDHPgMtV~sKVLyGsl~VkS 65 (279)
.++..-+.+.+ .|+|-.|.|+||+.+|.|-|... -+.-||.|++.+..
T Consensus 21 ~~~krll~~~~~~~~~~~~~~l~pG~~~~~h~h~~~-E~~yVL~G~~~~~~ 70 (125)
T PRK13290 21 WTSRRLLLKDDGMGFSFHETTIYAGTETHLHYKNHL-EAVYCIEGEGEVED 70 (125)
T ss_pred ceEEEEEEecCCCCEEEEEEEECCCCcccceeCCCE-EEEEEEeCEEEEEE
Confidence 45555566555 55665679999999999999876 59999999999874
No 6
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=94.34 E-value=0.023 Score=40.00 Aligned_cols=33 Identities=42% Similarity=0.776 Sum_probs=30.8
Q ss_pred EEEecCCCCcccCCCCCCCeeeeeeeecceEEE
Q 023638 32 GIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIK 64 (279)
Q Consensus 32 gIF~LppGa~IPLHDHPgMtV~sKVLyGsl~Vk 64 (279)
+++-|+||..+|.|-|++...+.-||.|++.+.
T Consensus 1 ~~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~ 33 (71)
T PF07883_consen 1 GLVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT 33 (71)
T ss_dssp EEEEEETTEEEEEEEESSEEEEEEEEESEEEEE
T ss_pred CEEEECCCCCCCCEECCCCCEEEEEEECCEEEE
Confidence 567899999999999999999999999999987
No 7
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=94.14 E-value=0.13 Score=46.05 Aligned_cols=45 Identities=16% Similarity=0.307 Sum_probs=39.7
Q ss_pred CCeEEEEeec-cCCeEEEEEecCCCCcccCCCCCCCeeeeeeeecce
Q 023638 16 PAITYQHIFE-CEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTM 61 (279)
Q Consensus 16 ~pItY~~IyE-~~~FSmgIF~LppGa~IPLHDHPgMtV~sKVLyGsl 61 (279)
+.+..+.++. ++.-++.++.+++|..||.|.|.|.- +.-||.|+.
T Consensus 113 ~gv~~~~L~~~~~~~~v~Ll~i~pG~~~p~H~H~G~E-~tlVLeG~f 158 (215)
T TIGR02451 113 GRVSRVTLPIDDGNARVRLLYIEAGQSIPQHTHKGFE-LTLVLHGAF 158 (215)
T ss_pred CCeEEEeccCCCCCcEEEEEEECCCCccCCCcCCCcE-EEEEEEEEE
Confidence 4688888887 55789999999999999999999998 778999996
No 8
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=94.02 E-value=0.086 Score=50.90 Aligned_cols=42 Identities=17% Similarity=0.398 Sum_probs=38.8
Q ss_pred cCCeEEEEEecCCCCcccCCCCCCCeeeeeeeecceEEEEee
Q 023638 26 CEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYD 67 (279)
Q Consensus 26 ~~~FSmgIF~LppGa~IPLHDHPgMtV~sKVLyGsl~VkSYD 67 (279)
...++++.+.|+||+..++|.||+..=+.-||.|++++..+|
T Consensus 242 ~~~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d 283 (367)
T TIGR03404 242 SKTIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFA 283 (367)
T ss_pred cceEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEe
Confidence 346899999999999999999999999999999999998776
No 9
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=93.22 E-value=0.13 Score=39.40 Aligned_cols=47 Identities=23% Similarity=0.449 Sum_probs=38.1
Q ss_pred CCCeEEEEeeccC---CeEEEEEecCCCCcccCCCCCCCeeeeeeeecceE
Q 023638 15 YPAITYQHIFECE---KFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMH 62 (279)
Q Consensus 15 ~~pItY~~IyE~~---~FSmgIF~LppGa~IPLHDHPgMtV~sKVLyGsl~ 62 (279)
.+.|..+.|+.++ ...+.+.-+.||+++|.|.|++---+ =||.|++.
T Consensus 7 ~~Gv~~~~L~~~~~~~g~~~~L~r~~pG~~~p~H~H~g~ee~-~VLeG~~~ 56 (91)
T PF12973_consen 7 RPGVSVKPLHRDEGETGERVSLLRLEPGASLPRHRHPGGEEI-LVLEGELS 56 (91)
T ss_dssp STTEEEEEEEECSSSTTEEEEEEEE-TTEEEEEEEESS-EEE-EEEECEEE
T ss_pred CCCEEEEEeccCCCcccCEEEEEEECCCCCcCccCCCCcEEE-EEEEEEEE
Confidence 5789999999765 46888888999999999999985544 78999887
No 10
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=92.55 E-value=0.21 Score=41.14 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=39.9
Q ss_pred EeeccCCeEEEEEecCCCCcccCCCCCCCeeeeeeeecceEEEEe
Q 023638 22 HIFECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSY 66 (279)
Q Consensus 22 ~IyE~~~FSmgIF~LppGa~IPLHDHPgMtV~sKVLyGsl~VkSY 66 (279)
.++++..+++..+.+++|...+.|-||+..-+.-||.|.+.+..-
T Consensus 23 ~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~ 67 (146)
T smart00835 23 PALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVV 67 (146)
T ss_pred cccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEE
Confidence 557788999999999999999999999877888999999998743
No 11
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=91.83 E-value=1.7 Score=43.01 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=40.1
Q ss_pred eEEEEeeccCCeEEEEEecCCCCcccCCCCCCCeeeeeeeecceEEE
Q 023638 18 ITYQHIFECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIK 64 (279)
Q Consensus 18 ItY~~IyE~~~FSmgIF~LppGa~IPLHDHPgMtV~sKVLyGsl~Vk 64 (279)
-+|..+++.+.|.+..+.++||+.+++|-|++=.-..-||.|++.+.
T Consensus 365 G~~~~~~~~~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~ 411 (468)
T TIGR01479 365 GKYDSIDQGDRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVT 411 (468)
T ss_pred CceEEEecCCCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEE
Confidence 46677899999999999999999999988886555558999999975
No 12
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=83.99 E-value=2.9 Score=34.13 Aligned_cols=50 Identities=22% Similarity=0.281 Sum_probs=43.4
Q ss_pred CCCeEEEEeeccCCeEEEEEecCCCCcccCCCCCCCeeeeeeeecceEEE
Q 023638 15 YPAITYQHIFECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIK 64 (279)
Q Consensus 15 ~~pItY~~IyE~~~FSmgIF~LppGa~IPLHDHPgMtV~sKVLyGsl~Vk 64 (279)
.+.-.|-.+...+.+++..+.+++|..++||-|..=--+--||.|.+.|.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~ 71 (127)
T COG0662 22 RPWGSYTVLDAGDRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVT 71 (127)
T ss_pred eCCcceeecccCCcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEE
Confidence 34556666778899999999999999999999999778889999999874
No 13
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=79.80 E-value=2.9 Score=38.45 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=30.8
Q ss_pred CeEEEEEecCCCCcccC-CCCCCCeeeeeeeecceEEE
Q 023638 28 KFSMGIFCLPPSGVIPL-HNHPGMTVFSKLLFGTMHIK 64 (279)
Q Consensus 28 ~FSmgIF~LppGa~IPL-HDHPgMtV~sKVLyGsl~Vk 64 (279)
+|.|.+|.|+||+.||. |-|+.++++ -||.|+..++
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~-yiL~G~G~~~ 214 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHVMEHGL-YVLEGKGVYN 214 (260)
T ss_pred CcEEEEEEECCCcccCCcccccceeEE-EEEeceEEEE
Confidence 88999999999999996 777766776 8899988864
No 14
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=78.89 E-value=21 Score=36.08 Aligned_cols=47 Identities=13% Similarity=0.207 Sum_probs=37.2
Q ss_pred eEEEEeeccCCeEEEEEecCCCCcccCCCCCCCeeeeeeeecceEEE
Q 023638 18 ITYQHIFECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIK 64 (279)
Q Consensus 18 ItY~~IyE~~~FSmgIF~LppGa~IPLHDHPgMtV~sKVLyGsl~Vk 64 (279)
-+|.-+-....|.|-...++||+.+++|-|..-.=+.-||.|++.+.
T Consensus 374 G~~~~l~~g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~ 420 (478)
T PRK15460 374 GKYDSIDAGDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVT 420 (478)
T ss_pred CceEeecCCCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEE
Confidence 45666677889999999999999998887766655555899988864
No 15
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=76.78 E-value=3.9 Score=39.72 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=34.5
Q ss_pred CeEEEEEecCCCCcccCCCCCCCeeeeeeeecceEEEEee
Q 023638 28 KFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYD 67 (279)
Q Consensus 28 ~FSmgIF~LppGa~IPLHDHPgMtV~sKVLyGsl~VkSYD 67 (279)
.+++...-|.+|+.+|+|.|.++. +.-||.|++++...|
T Consensus 66 ~ls~~~~~l~pG~~~~~HwH~~~E-~~yVl~G~~~v~~~d 104 (367)
T TIGR03404 66 AIAGVNMRLEPGAIRELHWHKEAE-WAYVLYGSCRITAVD 104 (367)
T ss_pred cccceEEEEcCCCCCCcccCCCce-EEEEEeeEEEEEEEc
Confidence 477888889999999999999986 899999999988754
No 16
>KOG4064 consensus Cysteine dioxygenase CDO1 [Amino acid transport and metabolism]
Probab=66.81 E-value=2.6 Score=38.14 Aligned_cols=46 Identities=26% Similarity=0.479 Sum_probs=42.7
Q ss_pred cCCeEEEEEecCCCCcccCCCCCCCeeeeeeeecceEEEEeecccC
Q 023638 26 CEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVD 71 (279)
Q Consensus 26 ~~~FSmgIF~LppGa~IPLHDHPgMtV~sKVLyGsl~VkSYDwv~~ 71 (279)
+-.|.+-|.|--+|---..|||-+-+-|+|+|.|.++=+-|-|-+.
T Consensus 69 NGKfNLmILCWGeGhgSSvHDHtdsHCF~KmL~G~L~Et~yawPd~ 114 (196)
T KOG4064|consen 69 NGKFNLMILCWGEGHGSSVHDHTDSHCFVKMLDGELTETKYAWPDR 114 (196)
T ss_pred CCeEeEEEEEecCCCCccccccccchhHHHHhcCcchhhcccCCCc
Confidence 5689999999999999999999999999999999999999999743
No 17
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=65.96 E-value=12 Score=29.70 Aligned_cols=47 Identities=23% Similarity=0.483 Sum_probs=37.3
Q ss_pred EEEEeeccCCeEEEEEecCCCCcccCCCCCCCeeeeeeeecceEEEE
Q 023638 19 TYQHIFECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKS 65 (279)
Q Consensus 19 tY~~IyE~~~FSmgIF~LppGa~IPLHDHPgMtV~sKVLyGsl~VkS 65 (279)
++..++....|+-|+..||+|+.=|+=+==.|+...-|+.|.+.|+-
T Consensus 2 ~~~k~f~~~~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti 48 (85)
T PF11699_consen 2 KFAKLFDTPFFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTI 48 (85)
T ss_dssp EEEEE--TTS-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEE
T ss_pred EEEEEcCCCCceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEE
Confidence 45677777899999999999999999999999999999999999875
No 18
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=65.72 E-value=8.7 Score=35.05 Aligned_cols=41 Identities=24% Similarity=0.221 Sum_probs=33.8
Q ss_pred ccCCeEEEEEecCCCCcccCCCCCCCeeeeeeeecceEEEEe
Q 023638 25 ECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSY 66 (279)
Q Consensus 25 E~~~FSmgIF~LppGa~IPLHDHPgMtV~sKVLyGsl~VkSY 66 (279)
+-..|||--|.+-||..-|.||| +|-++.-||.|.=.=.-|
T Consensus 69 ~~gfltV~~~t~~PG~~~p~HnH-~~wglVgil~G~E~n~~y 109 (191)
T COG5553 69 PQGFLTVYHITLSPGVQYPPHNH-LMWGLVGILWGGETNFIY 109 (191)
T ss_pred ccccEEEEEEEeCCCcccCCccc-chheeeeeeeccccccee
Confidence 34459999999999999999999 799999999887654434
No 19
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=59.87 E-value=23 Score=30.54 Aligned_cols=48 Identities=17% Similarity=0.226 Sum_probs=43.5
Q ss_pred eEEEEeeccCCeEEEEEecCCCCcccCCCCCCCeeeeeeeecceEEEE
Q 023638 18 ITYQHIFECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKS 65 (279)
Q Consensus 18 ItY~~IyE~~~FSmgIF~LppGa~IPLHDHPgMtV~sKVLyGsl~VkS 65 (279)
-+|--|.+.+.|.+-...+.||..|+||-|-.=.=.--|+.|++.|..
T Consensus 52 G~~~~l~~~~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~ 99 (151)
T PF01050_consen 52 GSYEVLDEGEGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTL 99 (151)
T ss_pred cEEEEEEccCCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEE
Confidence 467778889999999999999999999999998888899999999875
No 20
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=56.04 E-value=12 Score=30.72 Aligned_cols=42 Identities=12% Similarity=0.163 Sum_probs=36.7
Q ss_pred ccCCeEEEEEecCCCCcccCCCCCCCeeeeeeeecceEEEEee
Q 023638 25 ECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYD 67 (279)
Q Consensus 25 E~~~FSmgIF~LppGa~IPLHDHPgMtV~sKVLyGsl~VkSYD 67 (279)
.+..+.+.+..|.||+.++.|-| .-+-+.-|+.|++++.-.+
T Consensus 30 ~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~ 71 (144)
T PF00190_consen 30 GLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVG 71 (144)
T ss_dssp HHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEE
T ss_pred cccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEe
Confidence 44667777788899999999999 9999999999999987665
No 21
>PRK11171 hypothetical protein; Provisional
Probab=55.47 E-value=21 Score=32.96 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=30.7
Q ss_pred CeEEEEEecCCCCcccCCCCCCCeeeeeeeecceEEE
Q 023638 28 KFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIK 64 (279)
Q Consensus 28 ~FSmgIF~LppGa~IPLHDHPgMtV~sKVLyGsl~Vk 64 (279)
.|.|..|.|+||+.|+.|=|-++.=..-||.|++.+.
T Consensus 183 ~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~ 219 (266)
T PRK11171 183 DMHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYR 219 (266)
T ss_pred CcEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEE
Confidence 3578889999999999975666667778999999985
No 22
>PRK11171 hypothetical protein; Provisional
Probab=38.66 E-value=70 Score=29.54 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=34.1
Q ss_pred cCCeEEEEEecCCCCcccCCCCC-CCeeeeeeeecceEEEE
Q 023638 26 CEKFSMGIFCLPPSGVIPLHNHP-GMTVFSKLLFGTMHIKS 65 (279)
Q Consensus 26 ~~~FSmgIF~LppGa~IPLHDHP-gMtV~sKVLyGsl~VkS 65 (279)
...|.+.+..|+||+....|-|+ +.--+.-||.|.+.++-
T Consensus 58 ~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~ 98 (266)
T PRK11171 58 GATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL 98 (266)
T ss_pred CCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE
Confidence 57899999999999998888766 77778889999999863
No 23
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=38.16 E-value=82 Score=28.02 Aligned_cols=51 Identities=25% Similarity=0.427 Sum_probs=41.2
Q ss_pred CCCeEEEEeeccCCeEEEEEecCCCCcccCCCCCCCeeeeeeeecceEEEEee
Q 023638 15 YPAITYQHIFECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYD 67 (279)
Q Consensus 15 ~~pItY~~IyE~~~FSmgIF~LppGa~IPLHDHPgMtV~sKVLyGsl~VkSYD 67 (279)
.||+....||.+..|.+.++ =-+|++-..|.|+. --|.-+|-|++.|+--|
T Consensus 15 ~pPv~n~~l~~~~~~~v~~v-gGpn~R~d~H~~~t-dE~FyqleG~~~l~v~d 65 (159)
T TIGR03037 15 KPPVGNQQIWQDSEFMVTVV-GGPNARTDFHDDPG-EEFFYQLKGEMYLKVTE 65 (159)
T ss_pred CCCCCceEeecCCcEEEEEe-CCCCCCcccccCCC-ceEEEEEcceEEEEEEc
Confidence 57899999999888877763 36788899999995 66677899999997443
No 24
>PLN00212 glutelin; Provisional
Probab=37.27 E-value=45 Score=34.29 Aligned_cols=41 Identities=7% Similarity=-0.007 Sum_probs=36.7
Q ss_pred cCCeEEEEEecCCCCcccCCCCCCCeeeeeeeecceEEEEe
Q 023638 26 CEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSY 66 (279)
Q Consensus 26 ~~~FSmgIF~LppGa~IPLHDHPgMtV~sKVLyGsl~VkSY 66 (279)
.-..|+..--|.+|++++-|.||.-|-++-|+-|+++|.--
T Consensus 345 ~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV 385 (493)
T PLN00212 345 LIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVV 385 (493)
T ss_pred ccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEE
Confidence 45678888889999999999999999999999999998864
No 25
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=34.71 E-value=3.3e+02 Score=24.18 Aligned_cols=34 Identities=15% Similarity=0.035 Sum_probs=29.2
Q ss_pred CCCCcccCCCC--CCCeeeeeeeecceEEEEeeccc
Q 023638 37 PPSGVIPLHNH--PGMTVFSKLLFGTMHIKSYDWVV 70 (279)
Q Consensus 37 ppGa~IPLHDH--PgMtV~sKVLyGsl~VkSYDwv~ 70 (279)
.+|.+==||-| +++.=+.+|+.|++..-.+|.-.
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~ 87 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRR 87 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCC
Confidence 56998899998 78999999999999988888653
No 26
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=33.21 E-value=1.6e+02 Score=26.46 Aligned_cols=51 Identities=18% Similarity=0.045 Sum_probs=37.0
Q ss_pred CCCCeEEEEeecc----CCeEEEEEecCCCCc------ccCCCCCCC--eeeeeeeecceEEE
Q 023638 14 KYPAITYQHIFEC----EKFSMGIFCLPPSGV------IPLHNHPGM--TVFSKLLFGTMHIK 64 (279)
Q Consensus 14 ~~~pItY~~IyE~----~~FSmgIF~LppGa~------IPLHDHPgM--tV~sKVLyGsl~Vk 64 (279)
....+.++.-... ..+.+++-.|+||.+ -+-|-|+.. .=+.-||.|+..+.
T Consensus 49 ~d~~~Y~v~~~~~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~ 111 (191)
T PRK04190 49 EDTVVYEVYAIEPEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLML 111 (191)
T ss_pred CCceEEEEEEecCCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEE
Confidence 3456777654433 579999999999997 567888743 46677888887765
No 27
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=33.08 E-value=61 Score=26.99 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=23.2
Q ss_pred cCCCCcccCCCCCCCeeeeeeeecceEEEEeec
Q 023638 36 LPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDW 68 (279)
Q Consensus 36 LppGa~IPLHDHPgMtV~sKVLyGsl~VkSYDw 68 (279)
.|+|.+=-.|-|..++=+.=+|.|++.|...|+
T Consensus 40 ~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~ 72 (131)
T PF05523_consen 40 VPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDG 72 (131)
T ss_dssp --SS--EEEEEESS--EEEEEEES-EEEEEE-S
T ss_pred CCCCCcccccccccccEEEEEEeCEEEEEEecC
Confidence 678888899999999999999999999997764
No 28
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=29.53 E-value=1.5e+02 Score=26.88 Aligned_cols=52 Identities=23% Similarity=0.354 Sum_probs=41.3
Q ss_pred CCCCeEEEEeeccCCeEEEEEecCCCCcccCCCCCCCeeeeeeeecceEEEEee
Q 023638 14 KYPAITYQHIFECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYD 67 (279)
Q Consensus 14 ~~~pItY~~IyE~~~FSmgIF~LppGa~IPLHDHPgMtV~sKVLyGsl~VkSYD 67 (279)
-.||+.-..||.+..|.+-|.- =+|....+|.||+. -|.-+|.|++.|+--|
T Consensus 20 l~pPv~n~~l~~~~d~~Vmvvg-Gpn~r~d~H~~~td-E~FyqleG~~~l~v~d 71 (177)
T PRK13264 20 LKPPVGNKQIWQDSDFIVMVVG-GPNARTDFHYDPGE-EFFYQLEGDMYLKVQE 71 (177)
T ss_pred hCCCCCCeeeEcCCCEEEEEEc-cCCcccccccCCCc-eEEEEECCeEEEEEEc
Confidence 3578999999998777766532 47889999999984 5556799999998866
No 29
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=26.97 E-value=56 Score=24.37 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=27.4
Q ss_pred EEecCCCCcccCCCCCCCeeeeeeeecceEEEE
Q 023638 33 IFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKS 65 (279)
Q Consensus 33 IF~LppGa~IPLHDHPgMtV~sKVLyGsl~VkS 65 (279)
+|.|.+|..+.|+..-++. .+|..|.+=|+-
T Consensus 1 ~~~L~~g~~~~lr~~~~~~--l~v~~G~vWlT~ 31 (63)
T PF11142_consen 1 TFELAPGETLSLRAAAGQR--LRVESGRVWLTR 31 (63)
T ss_pred CEEeCCCceEEeEcCCCcE--EEEccccEEEEC
Confidence 4889999999999999998 899999887654
No 30
>COG2957 Peptidylarginine deiminase and related enzymes [Amino acid transport and metabolism]
Probab=22.57 E-value=42 Score=33.34 Aligned_cols=25 Identities=28% Similarity=0.582 Sum_probs=17.4
Q ss_pred cccCCCCeEEeecCCCCCeeeeeecCce
Q 023638 181 DLTAPCNTSILYPADGGNMHCFTAVTAC 208 (279)
Q Consensus 181 ~~ta~~~t~vLyP~~gGNlH~ftAvtpc 208 (279)
++.-||...++. |||+||+|--.|.
T Consensus 321 VVGVp~r~il~g---gGs~HCiTqQ~p~ 345 (346)
T COG2957 321 VVGVPAREILLG---GGSLHCITQQIPA 345 (346)
T ss_pred EeccccHHheec---CCceEEEeecccC
Confidence 444566666653 8999999976654
No 31
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=22.52 E-value=61 Score=29.61 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=25.8
Q ss_pred CCCcccCCCC-CCCeeeeeeeecceEEEEee
Q 023638 38 PSGVIPLHNH-PGMTVFSKLLFGTMHIKSYD 67 (279)
Q Consensus 38 pGa~IPLHDH-PgMtV~sKVLyGsl~VkSYD 67 (279)
|++.+.=|+| ||--+.+.||.|++.+.-||
T Consensus 20 p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~d 50 (287)
T PRK12335 20 PEMFQEKHNTKEGTWAKLTVLKGELKFYELT 50 (287)
T ss_pred hHHHHhccCCCCCcceEEEEEeeeEEEEEEC
Confidence 4455666999 89999999999999999996
No 32
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=22.32 E-value=1.3e+02 Score=27.80 Aligned_cols=40 Identities=20% Similarity=0.078 Sum_probs=32.9
Q ss_pred cCCeEEEEEecCCCCcccCCCCCCCeeeeeeeecceEEEEe
Q 023638 26 CEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSY 66 (279)
Q Consensus 26 ~~~FSmgIF~LppGa~IPLHDHPgMtV~sKVLyGsl~VkSY 66 (279)
-+..-+.|+.-|+....|+|.|..+-++ -++.|++.+..-
T Consensus 23 ~~~~~~~~~~~~~~~m~~~HwH~e~Ei~-yv~~G~~~~~i~ 62 (302)
T PRK10371 23 SEYQRLEIEFRPPHIMPTSHWHGQVEVN-VPFDGDVEYLIN 62 (302)
T ss_pred cCCceeEEEeeCCCCCCCCCccccEEEE-EecCCcEEEEEC
Confidence 3455678889999999999999999887 788999887653
No 33
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=20.58 E-value=2e+02 Score=26.51 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=32.1
Q ss_pred CCeEEEEEecCCCCcccC-CCCCCCeeeeeeeecceEEE
Q 023638 27 EKFSMGIFCLPPSGVIPL-HNHPGMTVFSKLLFGTMHIK 64 (279)
Q Consensus 27 ~~FSmgIF~LppGa~IPL-HDHPgMtV~sKVLyGsl~Vk 64 (279)
..|.+-++.|+||+..+. |-|++.--+.-||.|.+.|.
T Consensus 56 ~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~ 94 (260)
T TIGR03214 56 ATFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVT 94 (260)
T ss_pred CcEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEE
Confidence 689999999999877654 45788888999999999986
No 34
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=20.02 E-value=3.8e+02 Score=19.93 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=30.5
Q ss_pred cCCeEEEEEecCCCCcccCCCCCCCeeeeeee-ecceEEEEeecccCC
Q 023638 26 CEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLL-FGTMHIKSYDWVVDV 72 (279)
Q Consensus 26 ~~~FSmgIF~LppGa~IPLHDHPgMtV~sKVL-yGsl~VkSYDwv~~~ 72 (279)
++++..=.|-++..... ++-+||.++..++- .|....++|+.+..+
T Consensus 11 s~~~~~~~~~~~~~~~~-~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~ 57 (99)
T PF00970_consen 11 SPDVKIFRFKLPDPDQK-LDFKPGQFVSVRVPINGKQVSRPYSPASSP 57 (99)
T ss_dssp SSSEEEEEEEESSTTTT--SSTTT-EEEEEEEETTEEEEEEEEBCSST
T ss_pred CCCeEEEEEEECCCCcc-cccCcceEEEEEEccCCcceecceeEeeec
Confidence 34444445556644332 77899999999987 466788999988654
Done!