Query 023639
Match_columns 279
No_of_seqs 172 out of 416
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 05:32:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023639.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023639hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0627 Heat shock transcripti 99.9 1.6E-25 3.4E-30 208.0 8.0 126 1-126 72-209 (304)
2 PF00447 HSF_DNA-bind: HSF-typ 98.8 8.8E-10 1.9E-14 88.0 0.3 35 1-35 59-102 (103)
3 COG5169 HSF1 Heat shock transc 98.6 1.7E-08 3.6E-13 95.1 3.4 81 1-81 70-169 (282)
4 PF03310 Cauli_DNA-bind: Cauli 95.6 0.025 5.4E-07 47.8 5.2 62 68-132 2-63 (121)
5 PF04340 DUF484: Protein of un 90.1 1.5 3.2E-05 39.5 7.9 78 14-118 16-93 (225)
6 TIGR02449 conserved hypothetic 89.7 1.2 2.7E-05 33.9 5.9 45 56-100 19-63 (65)
7 PF11932 DUF3450: Protein of u 85.3 8.3 0.00018 35.3 9.8 60 55-114 53-112 (251)
8 PF12325 TMF_TATA_bd: TATA ele 85.1 4 8.7E-05 34.3 7.0 58 53-110 32-92 (120)
9 PF10473 CENP-F_leu_zip: Leuci 84.7 7.4 0.00016 33.7 8.6 58 55-112 56-113 (140)
10 PF06005 DUF904: Protein of un 83.3 5.9 0.00013 30.5 6.7 41 56-96 23-63 (72)
11 PRK15422 septal ring assembly 80.1 7.7 0.00017 30.8 6.3 21 56-76 23-43 (79)
12 TIGR02894 DNA_bind_RsfA transc 79.2 14 0.00031 32.8 8.5 55 60-114 99-153 (161)
13 PF06005 DUF904: Protein of un 79.0 8.9 0.00019 29.6 6.3 37 58-94 32-68 (72)
14 PF02183 HALZ: Homeobox associ 76.1 12 0.00025 26.4 5.8 41 56-96 3-43 (45)
15 TIGR03752 conj_TIGR03752 integ 75.8 19 0.00041 37.0 9.3 57 55-111 70-127 (472)
16 PRK10963 hypothetical protein; 75.8 16 0.00035 33.1 8.2 77 15-118 14-90 (223)
17 COG3074 Uncharacterized protei 72.6 26 0.00056 27.5 7.3 30 56-85 23-52 (79)
18 PF12329 TMF_DNA_bd: TATA elem 72.5 28 0.00061 26.7 7.6 56 55-110 16-71 (74)
19 PF05377 FlaC_arch: Flagella a 70.0 34 0.00074 25.4 7.2 31 65-95 7-37 (55)
20 KOG3863 bZIP transcription fac 69.3 8.3 0.00018 40.5 5.3 70 16-89 478-549 (604)
21 PF10168 Nup88: Nuclear pore c 68.7 19 0.00042 38.5 7.9 62 53-114 560-621 (717)
22 PF11932 DUF3450: Protein of u 67.3 70 0.0015 29.3 10.4 68 55-125 46-113 (251)
23 PF08826 DMPK_coil: DMPK coile 65.6 29 0.00063 26.1 6.2 43 55-101 5-47 (61)
24 PF04201 TPD52: Tumour protein 63.2 23 0.00049 31.6 6.1 40 56-95 27-66 (162)
25 PF04111 APG6: Autophagy prote 62.1 42 0.00092 32.2 8.2 50 54-103 46-95 (314)
26 smart00338 BRLZ basic region l 61.0 22 0.00047 26.0 4.8 33 55-87 30-62 (65)
27 PRK09039 hypothetical protein; 60.7 60 0.0013 31.6 9.1 44 56-99 121-164 (343)
28 PF07200 Mod_r: Modifier of ru 60.6 56 0.0012 27.3 7.9 67 55-126 38-104 (150)
29 PF08317 Spc7: Spc7 kinetochor 60.1 63 0.0014 30.9 9.0 50 58-107 209-258 (325)
30 PF09726 Macoilin: Transmembra 59.4 35 0.00076 36.5 7.8 26 55-80 422-447 (697)
31 KOG4005 Transcription factor X 59.0 40 0.00086 32.2 7.2 53 55-107 94-151 (292)
32 COG5481 Uncharacterized conser 57.6 35 0.00076 26.0 5.4 28 66-93 5-32 (67)
33 smart00787 Spc7 Spc7 kinetocho 57.3 75 0.0016 30.7 9.0 53 58-110 204-256 (312)
34 PF08581 Tup_N: Tup N-terminal 57.1 91 0.002 24.5 7.9 50 58-107 4-60 (79)
35 COG1579 Zn-ribbon protein, pos 57.0 36 0.00078 31.9 6.6 47 54-100 92-138 (239)
36 PF04156 IncA: IncA protein; 56.7 92 0.002 26.9 8.8 59 55-113 92-150 (191)
37 TIGR02449 conserved hypothetic 56.3 88 0.0019 23.9 8.7 56 56-111 5-60 (65)
38 PRK11637 AmiB activator; Provi 56.2 97 0.0021 30.5 9.8 53 59-111 83-135 (428)
39 KOG4460 Nuclear pore complex, 55.9 76 0.0016 33.7 9.2 63 54-116 584-646 (741)
40 TIGR03752 conj_TIGR03752 integ 54.7 29 0.00063 35.6 6.0 43 55-97 63-105 (472)
41 KOG0977 Nuclear envelope prote 54.6 74 0.0016 33.3 9.0 66 55-120 166-244 (546)
42 KOG4196 bZIP transcription fac 54.2 46 0.001 28.8 6.2 41 63-110 79-119 (135)
43 COG1579 Zn-ribbon protein, pos 53.7 51 0.0011 31.0 7.0 47 56-102 36-82 (239)
44 PF02403 Seryl_tRNA_N: Seryl-t 53.7 79 0.0017 25.0 7.3 54 54-107 39-95 (108)
45 PF04880 NUDE_C: NUDE protein, 53.6 6.8 0.00015 34.8 1.2 39 56-99 19-57 (166)
46 TIGR00219 mreC rod shape-deter 53.2 44 0.00095 31.6 6.6 27 58-84 66-92 (283)
47 PRK14127 cell division protein 53.0 43 0.00092 27.9 5.7 44 56-99 28-71 (109)
48 KOG4010 Coiled-coil protein TP 52.5 43 0.00093 30.8 6.1 40 57-96 43-82 (208)
49 PRK10884 SH3 domain-containing 51.6 47 0.001 30.3 6.4 25 70-94 137-161 (206)
50 PF00038 Filament: Intermediat 51.5 1.2E+02 0.0026 28.1 9.2 53 55-107 213-265 (312)
51 PF00170 bZIP_1: bZIP transcri 51.0 44 0.00095 24.3 5.0 29 56-84 31-59 (64)
52 PF10473 CENP-F_leu_zip: Leuci 50.9 1.4E+02 0.003 25.9 8.7 46 56-101 71-116 (140)
53 PF12329 TMF_DNA_bd: TATA elem 50.0 43 0.00093 25.7 5.0 39 58-96 33-71 (74)
54 PF11559 ADIP: Afadin- and alp 49.6 1.4E+02 0.003 25.1 8.5 45 55-99 56-100 (151)
55 PF10779 XhlA: Haemolysin XhlA 49.5 1.1E+02 0.0024 22.9 8.8 57 56-112 4-60 (71)
56 PRK09039 hypothetical protein; 48.7 1.1E+02 0.0023 29.9 8.6 58 56-113 128-185 (343)
57 PF05524 PEP-utilisers_N: PEP- 48.4 40 0.00087 27.2 4.9 57 71-127 34-91 (123)
58 COG4942 Membrane-bound metallo 48.0 1.1E+02 0.0023 31.3 8.6 45 55-99 63-107 (420)
59 PRK10803 tol-pal system protei 47.7 1.6E+02 0.0034 27.6 9.3 42 69-110 58-99 (263)
60 PF07407 Seadorna_VP6: Seadorn 47.5 45 0.00097 33.2 5.8 27 53-79 34-60 (420)
61 PF07407 Seadorna_VP6: Seadorn 47.4 1.8E+02 0.004 29.1 9.9 54 58-111 32-87 (420)
62 TIGR00414 serS seryl-tRNA synt 47.4 93 0.002 31.0 8.2 68 54-121 40-112 (418)
63 PF02183 HALZ: Homeobox associ 47.3 47 0.001 23.4 4.4 24 56-79 17-40 (45)
64 PF06160 EzrA: Septation ring 46.9 75 0.0016 32.8 7.7 90 56-147 349-439 (560)
65 COG3159 Uncharacterized protei 46.1 80 0.0017 29.4 6.9 79 12-117 12-90 (218)
66 PF11853 DUF3373: Protein of u 45.7 20 0.00043 36.9 3.3 38 55-100 22-59 (489)
67 PF11414 Suppressor_APC: Adeno 45.5 92 0.002 24.7 6.3 44 55-98 4-47 (84)
68 PF10805 DUF2730: Protein of u 45.2 58 0.0013 26.5 5.3 15 64-78 64-78 (106)
69 PRK15422 septal ring assembly 43.0 74 0.0016 25.3 5.4 33 57-89 38-70 (79)
70 PF04325 DUF465: Protein of un 42.8 39 0.00085 23.6 3.5 25 56-80 25-49 (49)
71 PF07106 TBPIP: Tat binding pr 42.6 1.2E+02 0.0027 25.9 7.3 56 56-111 77-134 (169)
72 PF10211 Ax_dynein_light: Axon 41.9 98 0.0021 27.6 6.7 54 55-111 124-177 (189)
73 KOG4360 Uncharacterized coiled 41.6 1E+02 0.0022 32.4 7.5 53 55-107 223-275 (596)
74 TIGR02132 phaR_Bmeg polyhydrox 41.4 1E+02 0.0022 28.1 6.7 52 55-110 83-138 (189)
75 PF14282 FlxA: FlxA-like prote 41.0 1.9E+02 0.0042 23.4 7.8 25 55-79 16-40 (106)
76 PF04977 DivIC: Septum formati 39.1 1.5E+02 0.0033 21.6 6.5 11 114-124 52-62 (80)
77 PRK06800 fliH flagellar assemb 38.9 2.2E+02 0.0048 26.4 8.5 61 56-116 36-114 (228)
78 COG1382 GimC Prefoldin, chaper 38.6 1.2E+02 0.0026 25.8 6.3 42 56-97 68-109 (119)
79 PF04728 LPP: Lipoprotein leuc 38.5 1.7E+02 0.0036 21.9 6.7 40 58-97 10-49 (56)
80 PF04420 CHD5: CHD5-like prote 38.2 1.4E+02 0.003 25.9 6.9 40 75-114 69-108 (161)
81 PF11559 ADIP: Afadin- and alp 37.5 2.5E+02 0.0054 23.6 8.8 44 56-99 64-107 (151)
82 PF12718 Tropomyosin_1: Tropom 37.1 1.7E+02 0.0037 25.0 7.3 41 57-97 20-60 (143)
83 PF00038 Filament: Intermediat 37.0 3E+02 0.0064 25.5 9.4 50 58-107 209-258 (312)
84 PF07106 TBPIP: Tat binding pr 36.8 1.2E+02 0.0026 26.0 6.4 24 55-78 83-106 (169)
85 PRK13182 racA polar chromosome 36.3 1.2E+02 0.0025 27.1 6.3 20 18-37 37-56 (175)
86 PF04380 BMFP: Membrane fusoge 35.9 69 0.0015 24.8 4.2 28 65-92 50-77 (79)
87 PF07888 CALCOCO1: Calcium bin 35.9 1.6E+02 0.0035 30.9 8.0 48 56-103 141-188 (546)
88 PF12269 zf-CpG_bind_C: CpG bi 35.7 92 0.002 29.3 5.7 26 89-114 39-64 (236)
89 PRK10803 tol-pal system protei 35.7 76 0.0016 29.6 5.2 30 65-94 61-90 (263)
90 PRK00888 ftsB cell division pr 35.5 1.4E+02 0.0029 24.4 6.1 25 60-84 29-53 (105)
91 PF13747 DUF4164: Domain of un 35.1 1.5E+02 0.0033 23.5 6.2 42 55-96 36-77 (89)
92 PHA02562 46 endonuclease subun 34.8 2.7E+02 0.0058 27.9 9.3 65 60-124 353-423 (562)
93 PRK05431 seryl-tRNA synthetase 34.7 1.6E+02 0.0035 29.4 7.6 68 54-121 38-109 (425)
94 PF09787 Golgin_A5: Golgin sub 34.7 1.7E+02 0.0038 29.8 8.0 40 58-97 274-313 (511)
95 PF02388 FemAB: FemAB family; 34.5 2.9E+02 0.0064 27.2 9.4 57 54-110 238-297 (406)
96 PF04012 PspA_IM30: PspA/IM30 34.4 2.5E+02 0.0054 24.9 8.2 46 62-107 95-140 (221)
97 PF07716 bZIP_2: Basic region 34.3 66 0.0014 22.8 3.6 23 56-78 30-52 (54)
98 PRK03947 prefoldin subunit alp 34.2 2.1E+02 0.0046 23.6 7.3 47 55-101 91-137 (140)
99 PHA02047 phage lambda Rz1-like 34.0 2.2E+02 0.0047 23.6 6.9 43 72-114 34-76 (101)
100 PRK10884 SH3 domain-containing 33.8 2.6E+02 0.0056 25.5 8.2 21 77-97 137-157 (206)
101 PF07889 DUF1664: Protein of u 33.8 3E+02 0.0065 23.5 8.1 18 87-104 69-86 (126)
102 PF10226 DUF2216: Uncharacteri 33.7 2.5E+02 0.0054 25.9 7.9 26 56-81 53-78 (195)
103 PF13874 Nup54: Nucleoporin co 33.2 3E+02 0.0064 23.2 8.1 43 58-107 44-86 (141)
104 PF10186 Atg14: UV radiation r 33.2 3.2E+02 0.0069 24.6 8.8 11 223-233 257-267 (302)
105 PF12718 Tropomyosin_1: Tropom 33.1 1.9E+02 0.0041 24.7 6.9 45 55-99 32-76 (143)
106 PF09726 Macoilin: Transmembra 32.5 2.1E+02 0.0047 30.7 8.5 42 59-100 539-580 (697)
107 PF04977 DivIC: Septum formati 32.3 1.4E+02 0.003 21.8 5.3 28 61-88 20-47 (80)
108 PF08606 Prp19: Prp19/Pso4-lik 32.2 1.5E+02 0.0032 23.1 5.4 36 55-90 5-40 (70)
109 PF02994 Transposase_22: L1 tr 32.1 50 0.0011 32.4 3.6 53 55-107 109-165 (370)
110 smart00415 HSF heat shock fact 31.8 18 0.00039 29.0 0.4 10 1-10 62-71 (105)
111 PRK05892 nucleoside diphosphat 31.7 1.7E+02 0.0036 25.5 6.4 25 54-78 14-38 (158)
112 PF11471 Sugarporin_N: Maltopo 31.4 52 0.0011 24.5 2.8 17 85-101 31-47 (60)
113 smart00340 HALZ homeobox assoc 31.2 61 0.0013 23.1 2.9 20 60-79 14-33 (44)
114 PRK00888 ftsB cell division pr 31.0 1.4E+02 0.003 24.4 5.4 9 116-124 64-72 (105)
115 PF06156 DUF972: Protein of un 30.8 1.3E+02 0.0028 24.8 5.3 27 56-82 20-46 (107)
116 PLN02320 seryl-tRNA synthetase 30.8 2E+02 0.0043 29.9 7.7 67 55-121 104-173 (502)
117 PF04849 HAP1_N: HAP1 N-termin 30.4 2.9E+02 0.0063 27.0 8.3 52 61-112 230-281 (306)
118 cd00632 Prefoldin_beta Prefold 30.3 2.1E+02 0.0045 22.8 6.3 44 55-98 60-103 (105)
119 PF07334 IFP_35_N: Interferon- 30.1 76 0.0017 25.0 3.6 16 59-74 8-23 (76)
120 PF09304 Cortex-I_coil: Cortex 30.0 2.5E+02 0.0053 23.6 6.7 47 54-100 19-65 (107)
121 PRK13922 rod shape-determining 29.9 1.7E+02 0.0036 27.0 6.5 25 58-82 69-93 (276)
122 PF10458 Val_tRNA-synt_C: Valy 29.8 2.3E+02 0.005 20.9 6.5 26 56-81 2-27 (66)
123 PF06216 RTBV_P46: Rice tungro 29.7 1.5E+02 0.0033 28.7 6.2 44 55-98 68-111 (389)
124 PRK13729 conjugal transfer pil 29.3 2.7E+02 0.0059 28.9 8.3 42 66-107 77-118 (475)
125 PLN02678 seryl-tRNA synthetase 29.2 2.5E+02 0.0054 28.6 8.0 68 54-121 43-114 (448)
126 PF12709 Kinetocho_Slk19: Cent 28.9 1.7E+02 0.0038 23.6 5.5 28 56-83 47-74 (87)
127 PF08781 DP: Transcription fac 28.9 2.8E+02 0.006 24.2 7.2 17 59-75 2-18 (142)
128 COG3290 CitA Signal transducti 28.6 6.2E+02 0.013 26.7 10.8 94 54-147 314-420 (537)
129 PF01025 GrpE: GrpE; InterPro 28.6 1.5E+02 0.0032 25.0 5.5 42 56-97 9-50 (165)
130 PF12308 Noelin-1: Neurogenesi 28.6 1.8E+02 0.0039 24.2 5.6 52 56-107 45-96 (101)
131 COG2433 Uncharacterized conser 28.5 4E+02 0.0087 28.7 9.5 43 55-97 426-468 (652)
132 TIGR02894 DNA_bind_RsfA transc 28.4 2.4E+02 0.0052 25.2 6.8 33 70-102 102-134 (161)
133 PRK06342 transcription elongat 28.1 99 0.0021 27.1 4.4 18 61-78 37-54 (160)
134 cd00890 Prefoldin Prefoldin is 28.1 2.8E+02 0.0061 22.0 6.8 43 55-97 84-126 (129)
135 PF07862 Nif11: Nitrogen fixat 27.9 67 0.0014 22.1 2.7 23 102-124 3-25 (49)
136 PF14817 HAUS5: HAUS augmin-li 27.9 2.6E+02 0.0057 29.8 8.2 39 67-105 81-119 (632)
137 PF01920 Prefoldin_2: Prefoldi 27.9 2.4E+02 0.0053 21.6 6.2 42 55-96 59-100 (106)
138 PF11382 DUF3186: Protein of u 27.8 1.5E+02 0.0032 28.4 5.9 36 55-90 36-71 (308)
139 PF12325 TMF_TATA_bd: TATA ele 27.8 3.7E+02 0.008 22.6 8.7 49 55-103 20-68 (120)
140 PF13094 CENP-Q: CENP-Q, a CEN 27.7 3.6E+02 0.0078 22.9 7.7 30 67-96 43-72 (160)
141 PF05701 WEMBL: Weak chloropla 27.3 1.9E+02 0.004 29.8 6.8 60 55-114 376-435 (522)
142 cd07619 BAR_Rich2 The Bin/Amph 27.2 4.2E+02 0.0092 25.0 8.7 24 103-126 187-210 (248)
143 PF14193 DUF4315: Domain of un 27.2 3.2E+02 0.0069 21.7 6.7 54 59-112 2-60 (83)
144 PF10883 DUF2681: Protein of u 27.2 2.9E+02 0.0064 22.2 6.5 33 58-90 23-55 (87)
145 PHA01819 hypothetical protein 27.1 86 0.0019 26.2 3.6 34 85-121 69-102 (129)
146 KOG0804 Cytoplasmic Zn-finger 26.6 2.6E+02 0.0056 29.0 7.5 45 59-103 348-392 (493)
147 PRK00846 hypothetical protein; 26.4 3E+02 0.0064 21.6 6.3 13 101-113 38-50 (77)
148 PF04582 Reo_sigmaC: Reovirus 26.2 1.8E+02 0.0038 28.7 6.1 49 55-103 109-157 (326)
149 KOG1760 Molecular chaperone Pr 25.5 2.9E+02 0.0063 23.9 6.5 42 55-96 78-119 (131)
150 KOG3915 Transcription regulato 25.2 2.1E+02 0.0046 30.0 6.6 13 59-71 500-512 (641)
151 PF14817 HAUS5: HAUS augmin-li 25.2 3.9E+02 0.0084 28.6 8.8 55 55-109 83-137 (632)
152 smart00338 BRLZ basic region l 25.2 2.7E+02 0.0058 20.1 6.1 22 61-82 29-50 (65)
153 PF10805 DUF2730: Protein of u 25.2 3.7E+02 0.008 21.7 7.3 48 58-105 42-91 (106)
154 PF09744 Jnk-SapK_ap_N: JNK_SA 25.2 4.7E+02 0.01 23.0 8.4 46 55-100 47-92 (158)
155 PF07888 CALCOCO1: Calcium bin 25.0 4.1E+02 0.0089 28.0 8.8 42 57-98 149-190 (546)
156 PF06156 DUF972: Protein of un 24.9 3E+02 0.0065 22.6 6.4 36 63-98 20-55 (107)
157 PF04849 HAP1_N: HAP1 N-termin 24.9 4.1E+02 0.0089 26.0 8.3 60 55-114 164-245 (306)
158 PF08826 DMPK_coil: DMPK coile 24.7 3.1E+02 0.0066 20.6 6.9 40 56-95 16-55 (61)
159 PRK10722 hypothetical protein; 24.6 2.9E+02 0.0063 26.3 7.0 21 79-99 169-189 (247)
160 PF08946 Osmo_CC: Osmosensory 24.4 1.5E+02 0.0033 21.3 3.9 31 77-107 10-40 (46)
161 PF04859 DUF641: Plant protein 23.8 1.8E+02 0.004 24.9 5.1 36 59-94 95-130 (131)
162 PF09727 CortBP2: Cortactin-bi 23.8 4.9E+02 0.011 23.8 8.1 16 95-110 171-186 (192)
163 PRK04406 hypothetical protein; 23.8 3.3E+02 0.0072 21.0 6.1 15 100-114 35-49 (75)
164 PRK10698 phage shock protein P 23.5 3.6E+02 0.0079 24.6 7.4 41 67-107 101-141 (222)
165 TIGR02338 gimC_beta prefoldin, 23.5 3.5E+02 0.0075 21.7 6.5 43 55-97 64-106 (110)
166 PRK13169 DNA replication intia 23.4 2.1E+02 0.0045 23.8 5.2 27 56-82 20-46 (110)
167 PF13863 DUF4200: Domain of un 23.3 3.9E+02 0.0085 21.4 8.2 32 66-97 75-106 (126)
168 KOG0930 Guanine nucleotide exc 23.2 59 0.0013 32.0 2.2 37 22-77 14-50 (395)
169 COG1730 GIM5 Predicted prefold 23.2 5E+02 0.011 22.6 7.9 44 55-98 91-134 (145)
170 TIGR02977 phageshock_pspA phag 22.9 5.6E+02 0.012 23.0 9.0 43 65-107 99-141 (219)
171 PRK14160 heat shock protein Gr 22.9 6.1E+02 0.013 23.4 9.6 41 56-96 59-99 (211)
172 PF08172 CASP_C: CASP C termin 22.7 1.8E+02 0.004 27.2 5.4 35 56-90 84-118 (248)
173 PF05278 PEARLI-4: Arabidopsis 22.6 4.3E+02 0.0092 25.5 7.8 35 65-99 207-241 (269)
174 COG1842 PspA Phage shock prote 22.4 5.1E+02 0.011 24.0 8.1 50 58-107 92-141 (225)
175 TIGR03798 ocin_TIGR03798 bacte 22.3 85 0.0019 23.0 2.5 22 103-124 2-23 (64)
176 COG3074 Uncharacterized protei 22.2 4E+02 0.0086 21.0 7.2 23 67-89 20-42 (79)
177 KOG0977 Nuclear envelope prote 22.2 3.7E+02 0.008 28.4 7.8 43 55-97 152-194 (546)
178 PRK00295 hypothetical protein; 22.1 3.5E+02 0.0076 20.4 6.5 9 102-110 31-39 (68)
179 PHA01750 hypothetical protein 22.0 3E+02 0.0065 21.5 5.4 24 65-88 42-65 (75)
180 KOG4001 Axonemal dynein light 22.0 3.9E+02 0.0085 25.2 7.2 57 52-111 186-242 (259)
181 PF03904 DUF334: Domain of unk 21.9 5.9E+02 0.013 24.0 8.4 58 58-115 43-108 (230)
182 PF08614 ATG16: Autophagy prot 21.9 5.5E+02 0.012 22.6 9.0 7 118-124 177-183 (194)
183 PF10393 Matrilin_ccoil: Trime 21.8 2.4E+02 0.0053 20.2 4.6 16 87-102 31-46 (47)
184 PF07798 DUF1640: Protein of u 21.8 5E+02 0.011 22.6 7.7 16 17-32 14-29 (177)
185 PRK11377 dihydroxyacetone kina 21.7 3.3E+02 0.0072 27.9 7.3 57 70-126 279-336 (473)
186 PF04156 IncA: IncA protein; 21.7 5.2E+02 0.011 22.2 8.7 44 56-99 107-150 (191)
187 PRK14148 heat shock protein Gr 21.7 6.1E+02 0.013 23.0 9.8 45 53-97 35-79 (195)
188 PF05529 Bap31: B-cell recepto 21.6 2.3E+02 0.005 24.7 5.5 33 67-99 156-188 (192)
189 KOG4163 Prolyl-tRNA synthetase 21.5 39 0.00085 34.8 0.7 19 10-28 195-214 (551)
190 PF15294 Leu_zip: Leucine zipp 21.5 6.7E+02 0.014 24.2 8.9 45 56-100 130-174 (278)
191 PLN02281 chlorophyllide a oxyg 21.3 2E+02 0.0043 30.2 5.7 44 60-110 123-166 (536)
192 TIGR01843 type_I_hlyD type I s 21.3 5.2E+02 0.011 24.4 8.3 26 69-94 148-173 (423)
193 COG1345 FliD Flagellar capping 21.1 4.2E+02 0.0092 27.3 8.0 55 54-111 425-479 (483)
194 PF02403 Seryl_tRNA_N: Seryl-t 20.7 2.3E+02 0.005 22.3 4.9 34 58-91 29-62 (108)
195 PRK15396 murein lipoprotein; P 20.6 4.3E+02 0.0092 20.8 6.5 35 58-92 25-59 (78)
196 smart00727 STI1 Heat shock cha 20.3 1E+02 0.0022 20.3 2.3 21 104-124 12-32 (41)
197 PRK14143 heat shock protein Gr 20.3 7.2E+02 0.016 23.3 9.6 43 55-97 64-106 (238)
198 PRK14011 prefoldin subunit alp 20.2 5.7E+02 0.012 22.1 7.6 38 55-92 85-122 (144)
199 PF04380 BMFP: Membrane fusoge 20.2 1.9E+02 0.0042 22.3 4.2 30 71-100 49-78 (79)
200 PF05064 Nsp1_C: Nsp1-like C-t 20.0 52 0.0011 27.1 1.1 48 56-110 48-95 (116)
No 1
>KOG0627 consensus Heat shock transcription factor [Transcription]
Probab=99.92 E-value=1.6e-25 Score=207.97 Aligned_cols=126 Identities=38% Similarity=0.638 Sum_probs=111.4
Q ss_pred CCcccccC--CCceeeccCCccCChhhhHhhhhhccCCCcccc----cCCCc------cccccccCCchHHHHHHHHHHH
Q 023639 1 MQGFRKVD--PDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQ----QRGGE------ACLEVGQYGLDGELERLKRDRN 68 (279)
Q Consensus 1 tYGFRKVd--pdrWEFaNe~F~RGq~hLLknIkRRk~~s~~~~----~~~~~------~~~e~g~~~l~~Ele~Lkrd~~ 68 (279)
|||||||+ +|+|||+|++|+||++|||++|+|||+...... ..... .++...+..+..++.+|+++++
T Consensus 72 ~YgFrKv~~~~~~wEF~n~~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 151 (304)
T KOG0627|consen 72 MYGFRKVDFKSDRWEFSNPCFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNLYGFVKIRQLNLKESAKSLSKENE 151 (304)
T ss_pred ccceeecCCCCCceeecChhHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhHHHHhhcccccchhHHHHHHHHHH
Confidence 89999999 999999999999999999999999999854421 11111 2334456789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhH
Q 023639 69 VLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSN 126 (279)
Q Consensus 69 ~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLakal~nP~Fl~~L~~~~ 126 (279)
+|+.|+++||+++..++.+++.+.+++..++++|++|+.|+++++.+|.|+.++.+..
T Consensus 152 ~l~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 209 (304)
T KOG0627|consen 152 VLQRELVELRQQQDALRATIQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAPQRQ 209 (304)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhhccccCchhhHHHHHhhHHHhhccCccchhcccchh
Confidence 9999999999999999999999999999999999999999999999999999988743
No 2
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []. Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....
Probab=98.80 E-value=8.8e-10 Score=88.03 Aligned_cols=35 Identities=51% Similarity=0.902 Sum_probs=27.6
Q ss_pred CCcccccCCCc---------eeeccCCccCChhhhHhhhhhccC
Q 023639 1 MQGFRKVDPDR---------WEFANEGFLGGQKHLLKTIKRRRH 35 (279)
Q Consensus 1 tYGFRKVdpdr---------WEFaNe~F~RGq~hLLknIkRRk~ 35 (279)
+|||+||.++. |+|.||+|+||+++||.+|+||++
T Consensus 59 ~yGF~k~~~~~~~~~~~~~~~~f~h~~F~r~~~~lL~~I~r~~~ 102 (103)
T PF00447_consen 59 MYGFKKVSSDSNQSSLSSNIWEFYHPNFRRGQPDLLSKIKRRKS 102 (103)
T ss_dssp HTTEEECC-SSCTTSSTTTTEEEEETT-BTTBCCCTTTS---TT
T ss_pred eeeeEEEecCccccccCCCCeEECCcCccCCCHHHHhhCccCCC
Confidence 59999998654 999999999999999999999975
No 3
>COG5169 HSF1 Heat shock transcription factor [Transcription]
Probab=98.64 E-value=1.7e-08 Score=95.05 Aligned_cols=81 Identities=31% Similarity=0.475 Sum_probs=56.3
Q ss_pred CCcccccC-C--------C-ceeeccCCccCChhhhHhhhhhccCCCcccccCC-Ccccc---cc-----ccCCchHHHH
Q 023639 1 MQGFRKVD-P--------D-RWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRG-GEACL---EV-----GQYGLDGELE 61 (279)
Q Consensus 1 tYGFRKVd-p--------d-rWEFaNe~F~RGq~hLLknIkRRk~~s~~~~~~~-~~~~~---e~-----g~~~l~~Ele 61 (279)
+|||+||- . + .|||+|+.|++|..+||++|+|+|.++......+ +..+. ++ .+..+..++.
T Consensus 70 ~YgFhKv~h~~~~~~~~n~~~wef~~~nF~~g~~~~L~~i~r~ka~~~~~~~~~~s~~~~~~~~~~~~i~~~~~~~~~~S 149 (282)
T COG5169 70 KYGFHKVSHKSGQRSYYNENVWEFGNKNFQLGMIELLKKIKRKKAPSNRVDSNNESKDAMMNIEVENIILPQSELYNSLS 149 (282)
T ss_pred hcCcEeccCCcccccccchhheeecCchhccCcHHHHHHhhhhhcCcccccccCCCCccccchhhhhhhchhcccCcchh
Confidence 69999998 2 2 3999999999999999999999998865422222 11211 11 2334666777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023639 62 RLKRDRNVLMAEIVRLRQHQ 81 (279)
Q Consensus 62 ~Lkrd~~~L~~El~~LRqqq 81 (279)
+|+..+.+++..+..|+.-+
T Consensus 150 ~l~~~~~~~~~~~~~lk~~~ 169 (282)
T COG5169 150 SLSNVNQTLLLYLNELKEYN 169 (282)
T ss_pred HHhhhhHHHhhhhccccchh
Confidence 77777777777777666543
No 4
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=95.58 E-value=0.025 Score=47.81 Aligned_cols=62 Identities=24% Similarity=0.371 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhhhhc
Q 023639 68 NVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHRREL 132 (279)
Q Consensus 68 ~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLakal~nP~Fl~~L~~~~~~~~~~ 132 (279)
++...||..+++.+..+...+.+|.++++++++.+++|.++-||++++ |...+.+-.=++++
T Consensus 2 ~~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkD---isdkIdkCeC~Kel 63 (121)
T PF03310_consen 2 ATIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKD---ISDKIDKCECNKEL 63 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHH---HHHHHHT-TTHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH---HHHHHHhchhhHHH
Confidence 567889999999999999999999999999999999999999999997 55556543223444
No 5
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=90.11 E-value=1.5 Score=39.49 Aligned_cols=78 Identities=18% Similarity=0.282 Sum_probs=40.5
Q ss_pred eccCCccCChhhhHhhhhhccCCCcccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 14 FANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMED 93 (279)
Q Consensus 14 FaNe~F~RGq~hLLknIkRRk~~s~~~~~~~~~~~~e~g~~~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~ 93 (279)
=+||+|....++||..|+=. + +.+ + . .+....-+.+||++.+..+.+|..|-+
T Consensus 16 ~~~PdFf~~~~~ll~~l~~p----h---~~~-~-a------------------vSL~erQ~~~LR~~~~~L~~~l~~Li~ 68 (225)
T PF04340_consen 16 RQHPDFFERHPELLAELRLP----H---PSG-G-A------------------VSLVERQLERLRERNRQLEEQLEELIE 68 (225)
T ss_dssp ----------------------------------H------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCcHHHHhCHHHHHHcCCC----C---CCC-C-c------------------ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999742 1 111 1 1 233445566777777788888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCch
Q 023639 94 RLLSTEKKQQQMMTFLAKALKNPSF 118 (279)
Q Consensus 94 Rl~~~E~kQqQm~sFLakal~nP~F 118 (279)
.-+..|+.++++..+-.+++.-.++
T Consensus 69 ~Ar~Ne~~~~~~~~l~l~LL~a~sl 93 (225)
T PF04340_consen 69 NARENEAIFQRLHRLVLALLAARSL 93 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--SH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 9999999999999999999986655
No 6
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=89.66 E-value=1.2 Score=33.89 Aligned_cols=45 Identities=27% Similarity=0.351 Sum_probs=31.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 100 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~ 100 (279)
+..|+..|+.....+..|-..|.++....+.++.+|-.||.+||+
T Consensus 19 L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 19 LKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 445566666666666666667777777777777888888877774
No 7
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=85.33 E-value=8.3 Score=35.31 Aligned_cols=60 Identities=17% Similarity=0.323 Sum_probs=41.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALK 114 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLakal~ 114 (279)
.+..+++.|+++.+.|...+.++.......+.++..+++++...+.-.+.+..++.+++.
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~ 112 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID 112 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666777777777777777788887777665
No 8
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=85.08 E-value=4 Score=34.34 Aligned_cols=58 Identities=26% Similarity=0.468 Sum_probs=41.2
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 53 QYGLDGELERLKRDRNVLMAEIVRLRQHQQQ---SRDQLSAMEDRLLSTEKKQQQMMTFLA 110 (279)
Q Consensus 53 ~~~l~~Ele~Lkrd~~~L~~El~~LRqqq~~---~~~ql~~m~~Rl~~~E~kQqQm~sFLa 110 (279)
...+..++.+|.+.+..|..||++|-..... ...++..++..+..++.|.+.++-+|-
T Consensus 32 ~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellG 92 (120)
T PF12325_consen 32 LASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLG 92 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3457777778888888888888888877743 345666777777777777776666543
No 9
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=84.71 E-value=7.4 Score=33.66 Aligned_cols=58 Identities=22% Similarity=0.340 Sum_probs=48.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKA 112 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLaka 112 (279)
.|..+++.+..+++.|..|+..+|.........++.+.+||..+|..+..+.++|..+
T Consensus 56 ~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~ 113 (140)
T PF10473_consen 56 TLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEK 113 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4777888888888888999999999999999999999999999998888777766543
No 10
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=83.27 E-value=5.9 Score=30.52 Aligned_cols=41 Identities=32% Similarity=0.378 Sum_probs=18.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 96 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~ 96 (279)
|..|++.||.++..|..|...|+++.+..+..-.+...||.
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666665444444444444333333333333333333
No 11
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=80.06 E-value=7.7 Score=30.76 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=14.1
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVR 76 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~ 76 (279)
|--||+.||..+..|..|+..
T Consensus 23 LqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777776665
No 12
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=79.22 E-value=14 Score=32.81 Aligned_cols=55 Identities=18% Similarity=0.335 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023639 60 LERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALK 114 (279)
Q Consensus 60 le~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLakal~ 114 (279)
...++.++..|..|+..|+++....+..+..+..++..++..-+.|+..+-+|-+
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK 153 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888888888888888888899999998888888888887776543
No 13
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=79.01 E-value=8.9 Score=29.56 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDR 94 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~R 94 (279)
.+...|+.++..|..|..+|++++......|..+=.|
T Consensus 32 e~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 32 EKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444444444444333
No 14
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=76.14 E-value=12 Score=26.45 Aligned_cols=41 Identities=22% Similarity=0.425 Sum_probs=25.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 96 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~ 96 (279)
++-+-+.||+....|..+-.+|.++.+....++..+...++
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455566666666666666666666666666666665543
No 15
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=75.80 E-value=19 Score=36.97 Aligned_cols=57 Identities=21% Similarity=0.228 Sum_probs=37.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDR-LLSTEKKQQQMMTFLAK 111 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~R-l~~~E~kQqQm~sFLak 111 (279)
.+..++..|.++|..|..|..+||+....+..+++.--+. -+.+.+.++|+-.-+.+
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~ 127 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQ 127 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4777888888888888888888888888877777542211 12233444455444443
No 16
>PRK10963 hypothetical protein; Provisional
Probab=75.78 E-value=16 Score=33.13 Aligned_cols=77 Identities=10% Similarity=0.237 Sum_probs=53.5
Q ss_pred ccCCccCChhhhHhhhhhccCCCcccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 15 ANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDR 94 (279)
Q Consensus 15 aNe~F~RGq~hLLknIkRRk~~s~~~~~~~~~~~~e~g~~~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~R 94 (279)
+||+|.-..++||..|+=- + +.+ | .+ +....-+.+||++....+.+|..|-+.
T Consensus 14 ~~PdFf~~h~~Ll~~L~lp----h---~~~-g-aV------------------SL~ErQ~~~LR~r~~~Le~~l~~Li~~ 66 (223)
T PRK10963 14 QNPDFFIRNARLVEQMRVP----H---PVR-G-TV------------------SLVEWQMARQRNHIHVLEEEMTLLMEQ 66 (223)
T ss_pred HCchHHhhCHHHHHhccCC----C---CCC-C-ee------------------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999977531 1 111 1 11 122233556677777777777888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCch
Q 023639 95 LLSTEKKQQQMMTFLAKALKNPSF 118 (279)
Q Consensus 95 l~~~E~kQqQm~sFLakal~nP~F 118 (279)
-+..+.-.+++.....+++.-.+|
T Consensus 67 A~~Ne~l~~~~~~l~l~Ll~a~~~ 90 (223)
T PRK10963 67 AIANEDLFYRLLPLQSRLAAADSL 90 (223)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCH
Confidence 888888888888888888876665
No 17
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.57 E-value=26 Score=27.51 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=21.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSR 85 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~ 85 (279)
+--||+.||..++.|..|+..+++.....+
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~ 52 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALE 52 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence 445788888888888888876666554433
No 18
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=72.48 E-value=28 Score=26.69 Aligned_cols=56 Identities=23% Similarity=0.273 Sum_probs=42.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLA 110 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLa 110 (279)
.|..|-+.|.+....+..-|-+||.+....+.++..+..++...+..=..+-.+|.
T Consensus 16 ~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 16 QLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46677778888888888888888888888888888888888887776666555543
No 19
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=69.95 E-value=34 Score=25.39 Aligned_cols=31 Identities=6% Similarity=0.276 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 65 RDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 95 (279)
Q Consensus 65 rd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl 95 (279)
.+...|...|..+|.+.+.....+..+++.+
T Consensus 7 n~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 7 NELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555544444455555444
No 20
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=69.29 E-value=8.3 Score=40.55 Aligned_cols=70 Identities=24% Similarity=0.357 Sum_probs=40.5
Q ss_pred cCCccCChhhhHhhhhhccCCCcccccCCCc--cccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 16 NEGFLGGQKHLLKTIKRRRHVSQSMQQRGGE--ACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLS 89 (279)
Q Consensus 16 Ne~F~RGq~hLLknIkRRk~~s~~~~~~~~~--~~~e~g~~~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~ 89 (279)
...|-.-|-.|...||||-...-.+++-... .| ...|+.|++.|+++++.|..|=..+..-...++.+|.
T Consensus 478 ~~~lte~QLslIrDIRRRgKNkvAAQnCRKRKLd~----I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls 549 (604)
T KOG3863|consen 478 KYKLTEEQLSLIRDIRRRGKNKVAAQNCRKRKLDC----ILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLS 549 (604)
T ss_pred hcccCHHHHHHhhccccccccchhccchhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666888999999995442222211100 11 1367888888888888888775544444333333333
No 21
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=68.74 E-value=19 Score=38.50 Aligned_cols=62 Identities=16% Similarity=0.364 Sum_probs=53.5
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023639 53 QYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALK 114 (279)
Q Consensus 53 ~~~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLakal~ 114 (279)
+..+...+..|+..++.-..||..+++.....+..-..+.+|+.....+|+.++.=+.++++
T Consensus 560 r~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~ 621 (717)
T PF10168_consen 560 REEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQ 621 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777888899999999999999999999888899999999999999999997776665
No 22
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=67.31 E-value=70 Score=29.26 Aligned_cols=68 Identities=22% Similarity=0.249 Sum_probs=44.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHh
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQS 125 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLakal~nP~Fl~~L~~~ 125 (279)
.+..+-..|..+...|..|+..|+.+....+.++...++.+..++++..++-.--..+.- ++.+++..
T Consensus 46 ~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p---~m~~m~~~ 113 (251)
T PF11932_consen 46 QWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP---LMEQMIDE 113 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 355666667777777777777777777777777777777777777776666655554443 44444443
No 23
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=65.60 E-value=29 Score=26.08 Aligned_cols=43 Identities=16% Similarity=0.337 Sum_probs=31.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKK 101 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~k 101 (279)
+|+.||. -+..|..||.+.|.-+..++.+|+..+.|.+.++..
T Consensus 5 aL~~Eir----akQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~e 47 (61)
T PF08826_consen 5 ALEAEIR----AKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQE 47 (61)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667774 378888888888888888887777777777665544
No 24
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=63.22 E-value=23 Score=31.56 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=34.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 95 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl 95 (279)
-++|-+.||.+...+..||..|||-.-.-+.+...++++|
T Consensus 27 sEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 27 SEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5677889999999999999999998888777777877775
No 25
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=62.11 E-value=42 Score=32.24 Aligned_cols=50 Identities=22% Similarity=0.470 Sum_probs=41.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 54 YGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQ 103 (279)
Q Consensus 54 ~~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQq 103 (279)
..+..|++.|+.+...|..||..|.++......++..++.....++....
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~ 95 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEE 95 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999988888777654333
No 26
>smart00338 BRLZ basic region leucin zipper.
Probab=61.01 E-value=22 Score=25.99 Aligned_cols=33 Identities=27% Similarity=0.477 Sum_probs=21.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQ 87 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~q 87 (279)
.|+.++..|..++..|..++..|+.+...++.+
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667777777777777776666666554443
No 27
>PRK09039 hypothetical protein; Validated
Probab=60.71 E-value=60 Score=31.57 Aligned_cols=44 Identities=32% Similarity=0.336 Sum_probs=23.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 99 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E 99 (279)
+..++..+|...+....+|.+|++|....+.|+..++..|...|
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556665555555555555555555555555555555555444
No 28
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=60.61 E-value=56 Score=27.32 Aligned_cols=67 Identities=22% Similarity=0.275 Sum_probs=41.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSN 126 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLakal~nP~Fl~~L~~~~ 126 (279)
.+..+++.|.+.+-.+..+|..+|.+.......+..++.+....+++++.+..-. +|.++...++..
T Consensus 38 ~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~-----s~~~l~~~L~~~ 104 (150)
T PF07200_consen 38 ELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNY-----SPDALLARLQAA 104 (150)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHHHHH
Confidence 3455666666666666677777777777777777777777777777777665432 366666666643
No 29
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=60.13 E-value=63 Score=30.94 Aligned_cols=50 Identities=20% Similarity=0.387 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMT 107 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~s 107 (279)
.+++.+|.+...+..+|..+|+.....+.++..+...+...+.+-+++.+
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~ 258 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLA 258 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777777777777777777777666555554444
No 30
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=59.37 E-value=35 Score=36.53 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=14.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQH 80 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqq 80 (279)
.|+.|+++||.|.....+-=..||++
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsq 447 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQ 447 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 36667777776655544444444444
No 31
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=59.01 E-value=40 Score=32.17 Aligned_cols=53 Identities=23% Similarity=0.251 Sum_probs=40.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL-----STEKKQQQMMT 107 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~-----~~E~kQqQm~s 107 (279)
.|+.+|..|-.++..|..|-..||.+..+.-.+-..+-.+|. -+|-+|+|++.
T Consensus 94 eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~~ 151 (292)
T KOG4005|consen 94 EMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQHN 151 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 478888888888999999999999888877777666666655 35667776665
No 32
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=57.65 E-value=35 Score=25.99 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 66 DRNVLMAEIVRLRQHQQQSRDQLSAMED 93 (279)
Q Consensus 66 d~~~L~~El~~LRqqq~~~~~ql~~m~~ 93 (279)
|...+...+.+|||++.....-+.+|.+
T Consensus 5 dqaeirl~~arLrqeH~D~DaaInAmi~ 32 (67)
T COG5481 5 DQAEIRLTLARLRQEHADFDAAINAMIA 32 (67)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4566888999999999999988888876
No 33
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=57.30 E-value=75 Score=30.72 Aligned_cols=53 Identities=23% Similarity=0.343 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLA 110 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLa 110 (279)
+|+.++|.+...+..|+...+++....+.++..+..+|.....+.+++.+=++
T Consensus 204 ~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~ 256 (312)
T smart00787 204 TELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIA 256 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777777777777777777776665555555444
No 34
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=57.08 E-value=91 Score=24.47 Aligned_cols=50 Identities=10% Similarity=0.281 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRLRQHQQQSRDQL-------SAMEDRLLSTEKKQQQMMT 107 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql-------~~m~~Rl~~~E~kQqQm~s 107 (279)
+=++.+|.|-..+..|+..++.+....+.++ +.+.+.|-.+|..+.+|-.
T Consensus 4 elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~ 60 (79)
T PF08581_consen 4 ELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQ 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888899999998888888777666654 3455566666666666544
No 35
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=57.01 E-value=36 Score=31.95 Aligned_cols=47 Identities=23% Similarity=0.314 Sum_probs=35.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 54 YGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 100 (279)
Q Consensus 54 ~~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~ 100 (279)
..|..|+..+++....|..||+.+...+.....++..+..++..+|.
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~ 138 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777788888888888888888877777777777777777766554
No 36
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=56.70 E-value=92 Score=26.88 Aligned_cols=59 Identities=24% Similarity=0.364 Sum_probs=50.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKAL 113 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLakal 113 (279)
.+..|++.+.+....+..++..++.........+...++|++..+.....+..=+....
T Consensus 92 ~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 92 QLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788889999999999999999998888888888999999998888888887666555
No 37
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=56.33 E-value=88 Score=23.87 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=38.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAK 111 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLak 111 (279)
++..|+.|=.-.+.|..|-..||+++......=..+.+++..+..|=.-|++=|..
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~ 60 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKA 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45566666666666666666777777776666677777777777777777776543
No 38
>PRK11637 AmiB activator; Provisional
Probab=56.17 E-value=97 Score=30.54 Aligned_cols=53 Identities=8% Similarity=0.137 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 59 ELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAK 111 (279)
Q Consensus 59 Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLak 111 (279)
+|..+....+.+..+|..+.++...++.+|..++.+|...+..-.+++..+.+
T Consensus 83 qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 83 AISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444444443334444444444
No 39
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.88 E-value=76 Score=33.71 Aligned_cols=63 Identities=16% Similarity=0.269 Sum_probs=44.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 023639 54 YGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNP 116 (279)
Q Consensus 54 ~~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLakal~nP 116 (279)
+.+...+..|++.+..-.++|+.++++....+..-.-+++|+..+--||.-++.-+.++++.|
T Consensus 584 ~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~ 646 (741)
T KOG4460|consen 584 EEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSF 646 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Confidence 345555666777777777777777777777776667777777777777777777766666644
No 40
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=54.67 E-value=29 Score=35.64 Aligned_cols=43 Identities=14% Similarity=0.296 Sum_probs=34.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 97 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~ 97 (279)
.|.+++..++++...|..+-.+|+.+.+..+.+...+.+||+.
T Consensus 63 Tlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~ 105 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQ 105 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4677888888888888888888888888877777777777765
No 41
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=54.58 E-value=74 Score=33.34 Aligned_cols=66 Identities=20% Similarity=0.366 Sum_probs=42.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHh--cCCchHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQ-------QSRDQLSAMEDRLLSTEKKQQ----QMMTFLAKAL--KNPSFFQ 120 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~-------~~~~ql~~m~~Rl~~~E~kQq----Qm~sFLakal--~nP~Fl~ 120 (279)
.+++|+..||+++..|..+|.++|.+.. ...+++++|.++|..+.+-.. ....+.++-. .|+.|+.
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~ 244 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFK 244 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHH
Confidence 4777888888888888888887776432 234566777888887763332 3444555444 4555554
No 42
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=54.16 E-value=46 Score=28.84 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 63 LKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLA 110 (279)
Q Consensus 63 Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLa 110 (279)
|.+++..|++||-+|+++. ..|..++...+.|.+++.+|-.
T Consensus 79 LE~~k~~L~qqv~~L~~e~-------s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 79 LEKEKAELQQQVEKLKEEN-------SRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhh
Confidence 3455566666666665544 4566666777777777777654
No 43
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=53.74 E-value=51 Score=30.98 Aligned_cols=47 Identities=23% Similarity=0.362 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQ 102 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQ 102 (279)
+..++++++++...+..|+..++.|....+..|+.+.+|+..+|.++
T Consensus 36 ~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 36 AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777777777777777777777766665555
No 44
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=53.68 E-value=79 Score=24.99 Aligned_cols=54 Identities=22% Similarity=0.417 Sum_probs=34.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 54 YGLDGELERLKRDRNVLMAEIVRLRQH---QQQSRDQLSAMEDRLLSTEKKQQQMMT 107 (279)
Q Consensus 54 ~~l~~Ele~Lkrd~~~L~~El~~LRqq---q~~~~~ql~~m~~Rl~~~E~kQqQm~s 107 (279)
..+..+++.|+.+++.+..+|..+... -.....++..+...+..+|.....+-.
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888888888877663 344455555555556555555444333
No 45
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=53.55 E-value=6.8 Score=34.84 Aligned_cols=39 Identities=23% Similarity=0.497 Sum_probs=10.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 99 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E 99 (279)
|+.|| .|++.|..|++|||-+..-.+..| .+.+|+...+
T Consensus 19 LE~EL----dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~~~~ 57 (166)
T PF04880_consen 19 LESEL----DEKENLREEVQRLKDELRDLKQEL-IVQEKLRKAN 57 (166)
T ss_dssp HHHHH----HHHHHHHHCH-------------------------
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhh
Confidence 66666 567778888888887777766666 6666665543
No 46
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=53.23 E-value=44 Score=31.62 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRLRQHQQQS 84 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LRqqq~~~ 84 (279)
..+.+|+.||..|..|+..|+++++..
T Consensus 66 ~~~~~l~~EN~~Lr~e~~~l~~~~~~~ 92 (283)
T TIGR00219 66 KDVNNLEYENYKLRQELLKKNQQLEIL 92 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355567777888888877775555543
No 47
>PRK14127 cell division protein GpsB; Provisional
Probab=52.98 E-value=43 Score=27.90 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=34.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 99 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E 99 (279)
.+.=++.+-.|...|..|+..|+.+....+.+|..++.|+...+
T Consensus 28 VD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 28 VDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 44556677788899999999998888888888888888777543
No 48
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=52.53 E-value=43 Score=30.79 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 57 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 96 (279)
Q Consensus 57 ~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~ 96 (279)
++|-+.||.+...+..||+-|||-.-.-+.+...++++|-
T Consensus 43 e~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLG 82 (208)
T KOG4010|consen 43 EEEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKLG 82 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4566778999999999999999988888888888888764
No 49
>PRK10884 SH3 domain-containing protein; Provisional
Probab=51.60 E-value=47 Score=30.26 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 70 LMAEIVRLRQHQQQSRDQLSAMEDR 94 (279)
Q Consensus 70 L~~El~~LRqqq~~~~~ql~~m~~R 94 (279)
|..|..+|+++...++.++..++..
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~ 161 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQ 161 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 50
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=51.53 E-value=1.2e+02 Score=28.13 Aligned_cols=53 Identities=28% Similarity=0.369 Sum_probs=32.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMT 107 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~s 107 (279)
....|+..+++....|..||..|+.+....+.+|..++.++...-..-+..+.
T Consensus 213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~ 265 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIA 265 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 35566667777777777777777777766666666666666554333333333
No 51
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=50.99 E-value=44 Score=24.33 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=15.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQS 84 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~ 84 (279)
|+.++..|..++..|..++..|+++....
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555554433
No 52
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=50.91 E-value=1.4e+02 Score=25.92 Aligned_cols=46 Identities=22% Similarity=0.336 Sum_probs=19.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKK 101 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~k 101 (279)
+..++..++.++..|..++.+.+.+-...+.....+...|+..|+.
T Consensus 71 L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 71 LELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444433
No 53
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=50.04 E-value=43 Score=25.68 Aligned_cols=39 Identities=21% Similarity=0.413 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 96 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~ 96 (279)
.-|..|+.....+..++..++.+.......+..+++|+.
T Consensus 33 ~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 33 NTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444444444444444444443
No 54
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=49.61 E-value=1.4e+02 Score=25.09 Aligned_cols=45 Identities=22% Similarity=0.410 Sum_probs=24.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 99 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E 99 (279)
.+...+.++..|+..|...+.+|+.+....+..+...+.+...+.
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~ 100 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQ 100 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555555555555555544444443
No 55
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=49.46 E-value=1.1e+02 Score=22.94 Aligned_cols=57 Identities=11% Similarity=0.222 Sum_probs=44.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKA 112 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLaka 112 (279)
+..++.+++.+...+...+..+.+.....+.++.++.++|..++..++=+..++..+
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~iiGa 60 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTIIGA 60 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777778888888888888888888999999999888887666655543
No 56
>PRK09039 hypothetical protein; Validated
Probab=48.75 E-value=1.1e+02 Score=29.90 Aligned_cols=58 Identities=22% Similarity=0.154 Sum_probs=38.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKAL 113 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLakal 113 (279)
...+......+...|..||..||.|...++..|.+.++|......+-..+-.-|..++
T Consensus 128 ~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 128 EKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555667777777888888888888888888877777665555555544444444
No 57
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=48.43 E-value=40 Score=27.19 Aligned_cols=57 Identities=21% Similarity=0.338 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCchHHHHHHhHH
Q 023639 71 MAEIVRLRQHQQQSRDQLSAMEDRLLSTE-KKQQQMMTFLAKALKNPSFFQQLAQSNA 127 (279)
Q Consensus 71 ~~El~~LRqqq~~~~~ql~~m~~Rl~~~E-~kQqQm~sFLakal~nP~Fl~~L~~~~~ 127 (279)
..|+.+|++=...+..+|..+.+++...- .....++..-..++.||.|+..+.....
T Consensus 34 ~~E~~rl~~Al~~~~~eL~~l~~~~~~~~~~~~a~If~ah~~~L~D~~l~~~v~~~I~ 91 (123)
T PF05524_consen 34 EAEIERLEQALEKAREELEQLAERAESKLGEEEAAIFEAHLMMLEDPELIDEVEELIR 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHSSCTHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcCHhHHHHHHHHHh
Confidence 34555555555555555556666644332 2233788889999999999998776543
No 58
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=47.96 E-value=1.1e+02 Score=31.25 Aligned_cols=45 Identities=22% Similarity=0.374 Sum_probs=23.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 99 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E 99 (279)
.|..+|..++.+.+.|..+|...--.....+..|..++.+|..++
T Consensus 63 kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 63 KLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 344555555555555555555444444445555555666655554
No 59
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=47.72 E-value=1.6e+02 Score=27.56 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 69 VLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLA 110 (279)
Q Consensus 69 ~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLa 110 (279)
.|...|..|+++....+-+++.+...|+.+.+||+.+-.=|.
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld 99 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQID 99 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666777777777777777655444
No 60
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=47.50 E-value=45 Score=33.21 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=22.8
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHH
Q 023639 53 QYGLDGELERLKRDRNVLMAEIVRLRQ 79 (279)
Q Consensus 53 ~~~l~~Ele~Lkrd~~~L~~El~~LRq 79 (279)
.++|..|+++||+|++.|..|+.+|..
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerLE~ 60 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERLEN 60 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999998843
No 61
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=47.42 E-value=1.8e+02 Score=29.07 Aligned_cols=54 Identities=11% Similarity=0.166 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSA--MEDRLLSTEKKQQQMMTFLAK 111 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~--m~~Rl~~~E~kQqQm~sFLak 111 (279)
+|.-.|+.||..|.+|+..||.+....++.+.. +.+|++-++-.-..+..-+-|
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk 87 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNK 87 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999998888877764 677777665544444433333
No 62
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=47.39 E-value=93 Score=31.01 Aligned_cols=68 Identities=21% Similarity=0.287 Sum_probs=47.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCchHHH
Q 023639 54 YGLDGELERLKRDRNVLMAEIVRLRQH----QQQSRDQLSAMEDRLLSTEKKQQQMMTFLA-KALKNPSFFQQ 121 (279)
Q Consensus 54 ~~l~~Ele~Lkrd~~~L~~El~~LRqq----q~~~~~ql~~m~~Rl~~~E~kQqQm~sFLa-kal~nP~Fl~~ 121 (279)
-.+..+++.|+.+++.+..+|..+++. .+....++..+.+++..+|.....+-.=+. .++.=|++++-
T Consensus 40 r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~ 112 (418)
T TIGR00414 40 KKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHE 112 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 357788999999999999999875433 345566777888888888877776655444 33334555543
No 63
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=47.32 E-value=47 Score=23.38 Aligned_cols=24 Identities=33% Similarity=0.583 Sum_probs=11.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQ 79 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRq 79 (279)
|..+.++|++++..|..||..|+.
T Consensus 17 Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 17 LKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554443
No 64
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=46.92 E-value=75 Score=32.81 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=48.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhhhhcCCc
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHRRELGGV 135 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLakal~nP~Fl~~L~~~~~~~~~~~~~ 135 (279)
+..+++.|.+....+...+..-..-+......+..+.++|...+..|..|..-|+.+-++-.-...-+..... .+...
T Consensus 349 l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~--~l~~i 426 (560)
T PF06160_consen 349 LEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQ--KLREI 426 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 4444444444444444444444444455555566677777778888888887777665543333322222211 11100
Q ss_pred c-cCcccCCCCCC
Q 023639 136 Q-TGRKRRLTATP 147 (279)
Q Consensus 136 ~-~~kKRRL~~~~ 147 (279)
. .-.|+.||+.|
T Consensus 427 kR~lek~nLPGlp 439 (560)
T PF06160_consen 427 KRRLEKSNLPGLP 439 (560)
T ss_pred HHHHHHcCCCCCC
Confidence 0 12578999887
No 65
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.11 E-value=80 Score=29.45 Aligned_cols=79 Identities=16% Similarity=0.278 Sum_probs=50.3
Q ss_pred eeeccCCccCChhhhHhhhhhccCCCcccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 12 WEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAM 91 (279)
Q Consensus 12 WEFaNe~F~RGq~hLLknIkRRk~~s~~~~~~~~~~~~e~g~~~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m 91 (279)
|=-.||.|.+-.++||..|+=..+.. ++.+.+ + ..+.++|++....+..|.++
T Consensus 12 yL~~hPeFf~~h~~Ll~~L~lph~~~------~tVSLv-------e--------------~ql~r~R~~~~~Le~~l~~L 64 (218)
T COG3159 12 YLRQHPEFFIQHAELLEELRLPHPVA------GTVSLV-------E--------------RQLARLRNRIRELEEELAAL 64 (218)
T ss_pred HHHhCcHHHHhCHHHHHHcCCCCCCC------CeeehH-------H--------------HHHHHHHHHHHHHHHHHHHH
Confidence 44579999999999999998754331 111111 1 23445555555666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCc
Q 023639 92 EDRLLSTEKKQQQMMTFLAKALKNPS 117 (279)
Q Consensus 92 ~~Rl~~~E~kQqQm~sFLakal~nP~ 117 (279)
.+.-...++-+.+++..-..+++-.+
T Consensus 65 ~~~A~~N~~lf~r~~~lq~~Ll~a~s 90 (218)
T COG3159 65 MENARANERLFYRLHALQLDLLDARS 90 (218)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 66667777777777777776666433
No 66
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=45.68 E-value=20 Score=36.92 Aligned_cols=38 Identities=21% Similarity=0.420 Sum_probs=24.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 100 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~ 100 (279)
++..+++.++ ..+.|.+||..|++|+. .|.+||..+|+
T Consensus 22 a~~~~~~~~q-kie~L~kql~~Lk~q~~-------~l~~~v~k~e~ 59 (489)
T PF11853_consen 22 AMADDIDLLQ-KIEALKKQLEELKAQQD-------DLNDRVDKVEK 59 (489)
T ss_pred hhhhhhHHHH-HHHHHHHHHHHHHHhhc-------ccccccchhhH
Confidence 4556666666 67777777777766654 66666666654
No 67
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=45.49 E-value=92 Score=24.75 Aligned_cols=44 Identities=14% Similarity=0.295 Sum_probs=34.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLST 98 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~ 98 (279)
++..-++.|-+++..|+.+|..+.+...=...||+.+.+|+..+
T Consensus 4 ~~lk~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~rq~~L 47 (84)
T PF11414_consen 4 NMLKRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQERQRHL 47 (84)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566788889999999999999888888888888888876644
No 68
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=45.22 E-value=58 Score=26.45 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 023639 64 KRDRNVLMAEIVRLR 78 (279)
Q Consensus 64 krd~~~L~~El~~LR 78 (279)
+.|...|..+|.+++
T Consensus 64 ~~dv~~L~l~l~el~ 78 (106)
T PF10805_consen 64 RDDVHDLQLELAELR 78 (106)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 69
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=43.03 E-value=74 Score=25.30 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 57 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLS 89 (279)
Q Consensus 57 ~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~ 89 (279)
..|++.++..+..|..|..+||++|..-...|.
T Consensus 38 ~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 38 SQEVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555544433333
No 70
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=42.81 E-value=39 Score=23.65 Aligned_cols=25 Identities=48% Similarity=0.589 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQH 80 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqq 80 (279)
-+.++.+||+++-.|.-||.++.+|
T Consensus 25 ~d~~l~~LKk~kL~LKDei~~ll~q 49 (49)
T PF04325_consen 25 DDEELERLKKEKLRLKDEIYRLLRQ 49 (49)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4578899999999999999887654
No 71
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=42.58 E-value=1.2e+02 Score=25.93 Aligned_cols=56 Identities=18% Similarity=0.286 Sum_probs=25.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQL--SAMEDRLLSTEKKQQQMMTFLAK 111 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql--~~m~~Rl~~~E~kQqQm~sFLak 111 (279)
|+.++..|+.+...|..++..|+.+...+...+ ..|...+..++..-.+|-+-|..
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544444444444433333 23444444445444455544443
No 72
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=41.87 E-value=98 Score=27.62 Aligned_cols=54 Identities=28% Similarity=0.430 Sum_probs=24.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAK 111 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLak 111 (279)
.+..++..|+.++..|..++..++.+...++.. .+++.+..+++.+.=+.||-+
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~---~~e~~~~~~k~~~~ei~~lk~ 177 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKR---EEELRQEEEKKHQEEIDFLKK 177 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554444433321 112233334444444555544
No 73
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=41.63 E-value=1e+02 Score=32.36 Aligned_cols=53 Identities=19% Similarity=0.362 Sum_probs=42.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMT 107 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~s 107 (279)
+...|+.++..++..|+.+|+.+.++-.-+..+...|.+.|+.+-..|.||-+
T Consensus 223 ~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~a 275 (596)
T KOG4360|consen 223 SKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTA 275 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 45567777778888899999999888888888888888888887777776544
No 74
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=41.41 E-value=1e+02 Score=28.14 Aligned_cols=52 Identities=10% Similarity=0.289 Sum_probs=36.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQ----HQQQSRDQLSAMEDRLLSTEKKQQQMMTFLA 110 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRq----qq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLa 110 (279)
.++..|++| +....++..... +...++..+..|++||..++.|=.+|+..|.
T Consensus 83 nlE~kvD~l----ee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE 138 (189)
T TIGR02132 83 NLEEKVDLI----EEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLE 138 (189)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466677666 333444333333 4456778889999999999999999998877
No 75
>PF14282 FlxA: FlxA-like protein
Probab=41.05 E-value=1.9e+02 Score=23.39 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQ 79 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRq 79 (279)
+.+..|+.|++....|..+|..|..
T Consensus 16 ~~~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 16 SSDSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3478999999999999999988877
No 76
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=39.06 E-value=1.5e+02 Score=21.56 Aligned_cols=11 Identities=18% Similarity=0.791 Sum_probs=8.4
Q ss_pred cCCchHHHHHH
Q 023639 114 KNPSFFQQLAQ 124 (279)
Q Consensus 114 ~nP~Fl~~L~~ 124 (279)
.+|+++..+..
T Consensus 52 ~~~~~ie~~AR 62 (80)
T PF04977_consen 52 NDPDYIEKVAR 62 (80)
T ss_pred CCHHHHHHHHH
Confidence 58888887665
No 77
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=38.90 E-value=2.2e+02 Score=26.39 Aligned_cols=61 Identities=25% Similarity=0.270 Sum_probs=36.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRD------------------QLSAMEDRLLSTEKKQQQMMTFLAKALKNP 116 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~------------------ql~~m~~Rl~~~E~kQqQm~sFLakal~nP 116 (279)
+..+.+.|......|-.|+..||+.|+.... +++.|+.--+.-++.|+++--=.+..+=+-
T Consensus 36 ~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~~e~~r~~fekekqq~~~~~t~~Lwde 114 (228)
T PRK06800 36 IQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEAARQQFQKEQQETAYEWTELLWDQ 114 (228)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777788888888777765543 233344434445566666655444444333
No 78
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=38.62 E-value=1.2e+02 Score=25.79 Aligned_cols=42 Identities=12% Similarity=0.346 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 97 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~ 97 (279)
.+.=++.|+...+.|...|..|+.|....+.++..|...|+.
T Consensus 68 k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 68 KEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456667777788888887777777766666666655554
No 79
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=38.53 E-value=1.7e+02 Score=21.87 Aligned_cols=40 Identities=18% Similarity=0.343 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 97 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~ 97 (279)
.+|..|......|..+|..||..-+..+..-..-.+||..
T Consensus 10 ~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 10 SDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444444444555543
No 80
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=38.18 E-value=1.4e+02 Score=25.90 Aligned_cols=40 Identities=13% Similarity=0.224 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023639 75 VRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALK 114 (279)
Q Consensus 75 ~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLakal~ 114 (279)
+||+++....+.+|+.+.+.+.....+-...++.+..++.
T Consensus 69 aKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (161)
T PF04420_consen 69 AKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWVLT 108 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777777777777776666666666665554443
No 81
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=37.46 E-value=2.5e+02 Score=23.56 Aligned_cols=44 Identities=23% Similarity=0.388 Sum_probs=22.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 99 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E 99 (279)
+..++++|..+...|...+..+.++.........++...+...+
T Consensus 64 l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~ 107 (151)
T PF11559_consen 64 LRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLE 107 (151)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555544443
No 82
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=37.15 E-value=1.7e+02 Score=24.98 Aligned_cols=41 Identities=22% Similarity=0.443 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 57 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 97 (279)
Q Consensus 57 ~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~ 97 (279)
...+..|..++..+-.||..|.++.+.++.+|..++.+|..
T Consensus 20 e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~ 60 (143)
T PF12718_consen 20 EAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKE 60 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555544444444444444444444
No 83
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=37.04 E-value=3e+02 Score=25.50 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMT 107 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~s 107 (279)
..+..++.+...+...|..|+.+....+.+...++.+|..++.+....+.
T Consensus 209 ~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~ 258 (312)
T PF00038_consen 209 EELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEERE 258 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHH
Confidence 44555555555566666666666666666666666666666655554444
No 84
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=36.77 E-value=1.2e+02 Score=25.98 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=10.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLR 78 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LR 78 (279)
.+..++..|+.+...|..|+..|+
T Consensus 83 ~L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 83 ELREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444433
No 85
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=36.34 E-value=1.2e+02 Score=27.09 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=12.8
Q ss_pred CccCChhhhHhhhhhccCCC
Q 023639 18 GFLGGQKHLLKTIKRRRHVS 37 (279)
Q Consensus 18 ~F~RGq~hLLknIkRRk~~s 37 (279)
.|-...-..|+.|+|-+...
T Consensus 37 ~y~~~dl~~L~~I~~l~~~G 56 (175)
T PRK13182 37 IFTEEDLQLLEYVKSQIEEG 56 (175)
T ss_pred EECHHHHHHHHHHHHHHHcC
Confidence 34444456888998876653
No 86
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=35.89 E-value=69 Score=24.78 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 65 RDRNVLMAEIVRLRQHQQQSRDQLSAME 92 (279)
Q Consensus 65 rd~~~L~~El~~LRqqq~~~~~ql~~m~ 92 (279)
.|-.++...+.++|++....+.+|.++|
T Consensus 50 EEFd~q~~~L~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 50 EEFDAQKAVLARTREKLEALEARLAALE 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666655544444444433
No 87
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=35.88 E-value=1.6e+02 Score=30.94 Aligned_cols=48 Identities=23% Similarity=0.426 Sum_probs=29.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQ 103 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQq 103 (279)
+...++...+++..|..+...|.++...++.++..|+..|...+.+..
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e 188 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEME 188 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666667666666666666666666666666555444333
No 88
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=35.71 E-value=92 Score=29.31 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023639 89 SAMEDRLLSTEKKQQQMMTFLAKALK 114 (279)
Q Consensus 89 ~~m~~Rl~~~E~kQqQm~sFLakal~ 114 (279)
..+..+|+.++.+++.|..|++++-+
T Consensus 39 ~~v~~~l~eLe~~~~el~~~i~~~k~ 64 (236)
T PF12269_consen 39 QKVRNRLQELEKRFKELEAIIARAKQ 64 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667888888999999999998655
No 89
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=35.67 E-value=76 Score=29.64 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 65 RDRNVLMAEIVRLRQHQQQSRDQLSAMEDR 94 (279)
Q Consensus 65 rd~~~L~~El~~LRqqq~~~~~ql~~m~~R 94 (279)
...+.|..||.+||-+.+....+|..|.+|
T Consensus 61 ~ql~~lq~ev~~LrG~~E~~~~~l~~~~~r 90 (263)
T PRK10803 61 QQLSDNQSDIDSLRGQIQENQYQLNQVVER 90 (263)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 90
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=35.46 E-value=1.4e+02 Score=24.38 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 60 LERLKRDRNVLMAEIVRLRQHQQQS 84 (279)
Q Consensus 60 le~Lkrd~~~L~~El~~LRqqq~~~ 84 (279)
...++++...+..|+.+++++....
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L 53 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQL 53 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555444433
No 91
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=35.14 E-value=1.5e+02 Score=23.46 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=23.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 96 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~ 96 (279)
.++.++..|..|++.|-.||-.........+.--..+.+||.
T Consensus 36 ~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~ 77 (89)
T PF13747_consen 36 ELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLD 77 (89)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666555544444444444444444
No 92
>PHA02562 46 endonuclease subunit; Provisional
Probab=34.83 E-value=2.7e+02 Score=27.85 Aligned_cols=65 Identities=17% Similarity=0.213 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhcCCchHHHHHH
Q 023639 60 LERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQ------QQMMTFLAKALKNPSFFQQLAQ 124 (279)
Q Consensus 60 le~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQ------qQm~sFLakal~nP~Fl~~L~~ 124 (279)
++.+.+++..|..||.+|..........|..+++++..+...+ .....++...+.+|+|...++.
T Consensus 353 i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~i~~~~~~~g~~~~i~~ 423 (562)
T PHA02562 353 LITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKDSGIKASIIK 423 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4444455555555666665555555555555555555543222 2345667777788877654443
No 93
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=34.74 E-value=1.6e+02 Score=29.42 Aligned_cols=68 Identities=21% Similarity=0.330 Sum_probs=46.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchHHH
Q 023639 54 YGLDGELERLKRDRNVLMAEIVRLRQHQ---QQSRDQLSAMEDRLLSTEKKQQQMMTFLAK-ALKNPSFFQQ 121 (279)
Q Consensus 54 ~~l~~Ele~Lkrd~~~L~~El~~LRqqq---~~~~~ql~~m~~Rl~~~E~kQqQm~sFLak-al~nP~Fl~~ 121 (279)
-.+..+++.|+++++.+..+|..+.... .....+...+.+++..+|.+...+-.-+.. ++.=|++++-
T Consensus 38 r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~ 109 (425)
T PRK05431 38 RELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHD 109 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 3577889999999999999998744332 245666777888888888777766554443 3344555543
No 94
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=34.72 E-value=1.7e+02 Score=29.81 Aligned_cols=40 Identities=38% Similarity=0.476 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 97 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~ 97 (279)
-|++.|+.|...+..|+..|+.|....+.++++++.++.+
T Consensus 274 ~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~ 313 (511)
T PF09787_consen 274 IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEG 313 (511)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788899999999999999999999999999988888766
No 95
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=34.48 E-value=2.9e+02 Score=27.20 Aligned_cols=57 Identities=25% Similarity=0.366 Sum_probs=41.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 54 YGLDGELERLKRDRNVLMAEIVRLRQHQQ---QSRDQLSAMEDRLLSTEKKQQQMMTFLA 110 (279)
Q Consensus 54 ~~l~~Ele~Lkrd~~~L~~El~~LRqqq~---~~~~ql~~m~~Rl~~~E~kQqQm~sFLa 110 (279)
.....-++.|+...+.|..++.+|..+.. ..+.++..+++++.+.+++..++..+++
T Consensus 238 l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~ 297 (406)
T PF02388_consen 238 LNGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIA 297 (406)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777788888888888887776522 4567788888888888888877666544
No 96
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=34.39 E-value=2.5e+02 Score=24.88 Aligned_cols=46 Identities=15% Similarity=0.304 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 62 RLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMT 107 (279)
Q Consensus 62 ~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~s 107 (279)
.+......|...+..+..+...++.++..|+.+|..++.+...+++
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~a 140 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKA 140 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555666666666666666555444
No 97
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=34.33 E-value=66 Score=22.76 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=10.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLR 78 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LR 78 (279)
|..++..|..++..|..+|..|+
T Consensus 30 le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 30 LEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444445555555544444443
No 98
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=34.16 E-value=2.1e+02 Score=23.62 Aligned_cols=47 Identities=17% Similarity=0.331 Sum_probs=34.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKK 101 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~k 101 (279)
.+++-++-|++....|...+..+.++......++..+.+.++.+..+
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777888888888888877777777777777777777665544
No 99
>PHA02047 phage lambda Rz1-like protein
Probab=34.01 E-value=2.2e+02 Score=23.64 Aligned_cols=43 Identities=12% Similarity=0.158 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023639 72 AEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALK 114 (279)
Q Consensus 72 ~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLakal~ 114 (279)
.+..+|..|.+..+.++.+..+.+..++.|+.+--.=+-.+++
T Consensus 34 ~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~ 76 (101)
T PHA02047 34 EEAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALD 76 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666665554444444444
No 100
>PRK10884 SH3 domain-containing protein; Provisional
Probab=33.82 E-value=2.6e+02 Score=25.52 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023639 77 LRQHQQQSRDQLSAMEDRLLS 97 (279)
Q Consensus 77 LRqqq~~~~~ql~~m~~Rl~~ 97 (279)
|+++.+..+.+++.+..++..
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444
No 101
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=33.82 E-value=3e+02 Score=23.45 Aligned_cols=18 Identities=17% Similarity=0.386 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023639 87 QLSAMEDRLLSTEKKQQQ 104 (279)
Q Consensus 87 ql~~m~~Rl~~~E~kQqQ 104 (279)
+|+.|..+|..+..-+++
T Consensus 69 RId~vd~klDe~~ei~~~ 86 (126)
T PF07889_consen 69 RIDRVDDKLDEQKEISKQ 86 (126)
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 344444444443333333
No 102
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=33.69 E-value=2.5e+02 Score=25.87 Aligned_cols=26 Identities=23% Similarity=0.148 Sum_probs=19.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQ 81 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq 81 (279)
-..||..||..|..|..|-..||.-+
T Consensus 53 hl~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 53 HLNEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44688888888888888888777543
No 103
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=33.24 E-value=3e+02 Score=23.23 Aligned_cols=43 Identities=14% Similarity=0.328 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMT 107 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~s 107 (279)
.+++.++.-...+...+..|+.....+ ..||..+.+|+.++.-
T Consensus 44 ~~~~~~~~~l~~i~~~l~~L~~~~~~~-------~~rl~~~r~r~~~L~h 86 (141)
T PF13874_consen 44 EEIAQHRERLKEINDKLEELQKHDLET-------SARLEEARRRHQELSH 86 (141)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHH
Confidence 455556666667777777774444333 3444445555554444
No 104
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=33.20 E-value=3.2e+02 Score=24.64 Aligned_cols=11 Identities=0% Similarity=-0.224 Sum_probs=5.3
Q ss_pred HHHHHHHhhcc
Q 023639 223 ETIWEDFMADD 233 (279)
Q Consensus 223 ~~~weeLl~~d 233 (279)
+.-+=-||+.|
T Consensus 257 f~~~v~lLn~n 267 (302)
T PF10186_consen 257 FEYAVFLLNKN 267 (302)
T ss_pred HHHHHHHHHHH
Confidence 44444455555
No 105
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=33.11 E-value=1.9e+02 Score=24.73 Aligned_cols=45 Identities=20% Similarity=0.375 Sum_probs=27.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 99 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E 99 (279)
.++.+|..|.+-+..|-.+|-++..+...++..+.....+...+|
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E 76 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE 76 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Confidence 356666667777777777766666666666655555444444333
No 106
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=32.46 E-value=2.1e+02 Score=30.74 Aligned_cols=42 Identities=26% Similarity=0.394 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 59 ELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 100 (279)
Q Consensus 59 Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~ 100 (279)
--+.+|.-+..|..|+.+||.+....+.++..|+..++.+.+
T Consensus 539 ~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 539 CAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334678788889999999999999999999999988865544
No 107
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=32.29 E-value=1.4e+02 Score=21.77 Aligned_cols=28 Identities=18% Similarity=0.387 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 61 ERLKRDRNVLMAEIVRLRQHQQQSRDQL 88 (279)
Q Consensus 61 e~Lkrd~~~L~~El~~LRqqq~~~~~ql 88 (279)
.+++.+...|..++..++++....+.++
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei 47 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEI 47 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333333
No 108
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=32.16 E-value=1.5e+02 Score=23.07 Aligned_cols=36 Identities=31% Similarity=0.452 Sum_probs=29.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSA 90 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~ 90 (279)
.+.+=+..|+.+-.+++.|.-.||++...++.+|..
T Consensus 5 SIP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~ 40 (70)
T PF08606_consen 5 SIPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSH 40 (70)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567789999999999999999999888766643
No 109
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=32.15 E-value=50 Score=32.42 Aligned_cols=53 Identities=19% Similarity=0.412 Sum_probs=17.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQ----QSRDQLSAMEDRLLSTEKKQQQMMT 107 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~----~~~~ql~~m~~Rl~~~E~kQqQm~s 107 (279)
.|..|++.+|+.......+|..+..... .+..++..+++|+..+|.+...|-.
T Consensus 109 elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~ 165 (370)
T PF02994_consen 109 ELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQ 165 (370)
T ss_dssp ---------H-------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 3566777777666666666665555442 4557788888888888877765544
No 110
>smart00415 HSF heat shock factor.
Probab=31.82 E-value=18 Score=29.04 Aligned_cols=10 Identities=80% Similarity=1.414 Sum_probs=8.4
Q ss_pred CCcccccCCC
Q 023639 1 MQGFRKVDPD 10 (279)
Q Consensus 1 tYGFRKVdpd 10 (279)
+|||+||.+.
T Consensus 62 ~yGF~k~~~~ 71 (105)
T smart00415 62 MYGFRKVDPE 71 (105)
T ss_pred hcCCEEeccc
Confidence 6999999864
No 111
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=31.75 E-value=1.7e+02 Score=25.52 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=14.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHH
Q 023639 54 YGLDGELERLKRDRNVLMAEIVRLR 78 (279)
Q Consensus 54 ~~l~~Ele~Lkrd~~~L~~El~~LR 78 (279)
..|..|++.|+.++..+..+|..-|
T Consensus 14 ~~L~~EL~~L~~~r~~i~~~i~~Ar 38 (158)
T PRK05892 14 DHLEAELARLRARRDRLAVEVNDRG 38 (158)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3466666666665555555554333
No 112
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=31.40 E-value=52 Score=24.52 Aligned_cols=17 Identities=35% Similarity=0.671 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023639 85 RDQLSAMEDRLLSTEKK 101 (279)
Q Consensus 85 ~~ql~~m~~Rl~~~E~k 101 (279)
+.+|..||+||+.+|++
T Consensus 31 EqRLa~LE~rL~~ae~r 47 (60)
T PF11471_consen 31 EQRLAALEQRLQAAEQR 47 (60)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555555544
No 113
>smart00340 HALZ homeobox associated leucin zipper.
Probab=31.18 E-value=61 Score=23.07 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023639 60 LERLKRDRNVLMAEIVRLRQ 79 (279)
Q Consensus 60 le~Lkrd~~~L~~El~~LRq 79 (279)
-++|..+|..|..|++.||.
T Consensus 14 ce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 14 CESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35566777777777776664
No 114
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=31.02 E-value=1.4e+02 Score=24.36 Aligned_cols=9 Identities=11% Similarity=0.143 Sum_probs=4.6
Q ss_pred CchHHHHHH
Q 023639 116 PSFFQQLAQ 124 (279)
Q Consensus 116 P~Fl~~L~~ 124 (279)
++.+..+.+
T Consensus 64 ~dyiEe~AR 72 (105)
T PRK00888 64 QEAIEERAR 72 (105)
T ss_pred HHHHHHHHH
Confidence 355555544
No 115
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=30.82 E-value=1.3e+02 Score=24.77 Aligned_cols=27 Identities=41% Similarity=0.497 Sum_probs=13.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQ 82 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~ 82 (279)
+-.++..||.....|..|-++||-+.+
T Consensus 20 l~~~~~~LK~~~~~l~EEN~~L~~EN~ 46 (107)
T PF06156_consen 20 LLEELEELKKQLQELLEENARLRIENE 46 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555554443
No 116
>PLN02320 seryl-tRNA synthetase
Probab=30.78 E-value=2e+02 Score=29.88 Aligned_cols=67 Identities=19% Similarity=0.286 Sum_probs=36.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQ--HQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAK-ALKNPSFFQQ 121 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRq--qq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLak-al~nP~Fl~~ 121 (279)
.+..+++.|+.+++.+..+|...+. +.+....++..+.+++..+|...+.+-.-|.. ++.=|++++-
T Consensus 104 ~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h~ 173 (502)
T PLN02320 104 ALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHP 173 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 4556677777777777777653111 12233445556666666666666655544433 2333444443
No 117
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=30.44 E-value=2.9e+02 Score=27.03 Aligned_cols=52 Identities=21% Similarity=0.329 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 61 ERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKA 112 (279)
Q Consensus 61 e~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLaka 112 (279)
.+...+...|..+|+.|.++.+..-.....|.++|..+...|.++.+=|.-+
T Consensus 230 ~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~el 281 (306)
T PF04849_consen 230 RRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQEL 281 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556667777777777777777777778888888888888777665543
No 118
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=30.25 E-value=2.1e+02 Score=22.75 Aligned_cols=44 Identities=14% Similarity=0.313 Sum_probs=34.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLST 98 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~ 98 (279)
..+.-+..|......|..++.++..+......++..++.+|..+
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888888888888888888888888888888877654
No 119
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=30.13 E-value=76 Score=24.99 Aligned_cols=16 Identities=44% Similarity=0.480 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 023639 59 ELERLKRDRNVLMAEI 74 (279)
Q Consensus 59 Ele~Lkrd~~~L~~El 74 (279)
|..+||++...|.+|+
T Consensus 8 En~~Lk~eiqkle~EL 23 (76)
T PF07334_consen 8 ENARLKEEIQKLEAEL 23 (76)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444443333
No 120
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=30.01 E-value=2.5e+02 Score=23.57 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=29.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 54 YGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 100 (279)
Q Consensus 54 ~~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~ 100 (279)
.+|..+++..|..+..|..+=-.|+-.++....|-....+|+..++.
T Consensus 19 a~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqa 65 (107)
T PF09304_consen 19 ASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQA 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777766666666666666666666666666555443
No 121
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=29.94 E-value=1.7e+02 Score=26.99 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRLRQHQQ 82 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LRqqq~ 82 (279)
.....+++++..|..|+..|+.+..
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666665554
No 122
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=29.80 E-value=2.3e+02 Score=20.85 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=15.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQ 81 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq 81 (279)
++.|+.+|.++...+..+|.++....
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL 27 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666555443
No 123
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=29.74 E-value=1.5e+02 Score=28.73 Aligned_cols=44 Identities=14% Similarity=0.214 Sum_probs=34.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLST 98 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~ 98 (279)
.++.|++.-+.+-..|...+..|+.+....+.+|.+|.+.|.++
T Consensus 68 ~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~egl 111 (389)
T PF06216_consen 68 NKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGL 111 (389)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46677777777777788888888888888888888888877764
No 124
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=29.30 E-value=2.7e+02 Score=28.85 Aligned_cols=42 Identities=7% Similarity=0.085 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 66 DRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMT 107 (279)
Q Consensus 66 d~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~s 107 (279)
..+.|.++|..||++-+.+..+.+.++++|..+|..-+++-.
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~ 118 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAE 118 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 455667777777777666667777777777766655554444
No 125
>PLN02678 seryl-tRNA synthetase
Probab=29.20 E-value=2.5e+02 Score=28.64 Aligned_cols=68 Identities=18% Similarity=0.230 Sum_probs=41.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchHHH
Q 023639 54 YGLDGELERLKRDRNVLMAEIVRLRQHQ---QQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALK-NPSFFQQ 121 (279)
Q Consensus 54 ~~l~~Ele~Lkrd~~~L~~El~~LRqqq---~~~~~ql~~m~~Rl~~~E~kQqQm~sFLakal~-nP~Fl~~ 121 (279)
-.+..+++.|+.+++.+..+|..+.... .....++..+.+.+..+|.....+-+-|..++. =|++++-
T Consensus 43 r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~~~ 114 (448)
T PLN02678 43 RQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLVHD 114 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 3567788888888888888887543222 233445566777777777776665554443332 3444443
No 126
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=28.94 E-value=1.7e+02 Score=23.56 Aligned_cols=28 Identities=14% Similarity=0.322 Sum_probs=18.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQ 83 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~ 83 (279)
.+..+..|..++..|..|+..|+.+...
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~ 74 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDT 74 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777666544
No 127
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=28.85 E-value=2.8e+02 Score=24.21 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023639 59 ELERLKRDRNVLMAEIV 75 (279)
Q Consensus 59 Ele~Lkrd~~~L~~El~ 75 (279)
++++|+.++..+...|.
T Consensus 2 ~~~~Le~ek~~~~~rI~ 18 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIK 18 (142)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45666666666655444
No 128
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=28.64 E-value=6.2e+02 Score=26.73 Aligned_cols=94 Identities=19% Similarity=0.298 Sum_probs=62.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHhcCCchHHH
Q 023639 54 YGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAME------------DRLLSTEKKQQQMMTFLAKALKNPSFFQQ 121 (279)
Q Consensus 54 ~~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~------------~Rl~~~E~kQqQm~sFLakal~nP~Fl~~ 121 (279)
|-...|+.+|-.......+=.-.||-|...+.++|.+.- +=++.....||+.+.||...++||...-=
T Consensus 314 FRdktei~~L~eqLt~vr~ya~aLRaq~HEfmNkLhtI~GLlql~~yd~a~~~I~~~~~~qq~~~~~l~~~i~~~~lAg~ 393 (537)
T COG3290 314 FRDKTEIKKLTEQLTGVRQYAEALRAQSHEFMNKLHTILGLLQLGEYDDALDYIQQESEEQQELIDSLSEKIKDPVLAGF 393 (537)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhhhHHHHHHhcccHHHHHH
Confidence 445677777777777777667778888888888886544 34555667799999999999999866555
Q ss_pred HHHhHHhhhhcC-CcccCcccCCCCCC
Q 023639 122 LAQSNAHRRELG-GVQTGRKRRLTATP 147 (279)
Q Consensus 122 L~~~~~~~~~~~-~~~~~kKRRL~~~~ 147 (279)
|+-+..+-++++ .......-.|+..|
T Consensus 394 LlgK~~rArElgv~l~Id~~S~l~~~p 420 (537)
T COG3290 394 LLGKISRARELGVSLIIDPNSQLPQLP 420 (537)
T ss_pred HHhHHHHHHHcCceEEEcCCCcCCCCC
Confidence 555555555653 22233444454433
No 129
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=28.59 E-value=1.5e+02 Score=25.03 Aligned_cols=42 Identities=24% Similarity=0.327 Sum_probs=22.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 97 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~ 97 (279)
...++..++.+...|..++..++.+.......+..+.+|+..
T Consensus 9 ~~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~ 50 (165)
T PF01025_consen 9 EDEEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEK 50 (165)
T ss_dssp CHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555566656543
No 130
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=28.57 E-value=1.8e+02 Score=24.18 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMT 107 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~s 107 (279)
|.+++.++..-.++|-.--.+==|.-+.++.+|..|+-+++..|..++.+++
T Consensus 45 llekVqNmSqsievL~~RT~rdlqyv~~~E~~mk~l~~k~~~~e~~~~~l~~ 96 (101)
T PF12308_consen 45 LLEKVQNMSQSIEVLDLRTQRDLQYVRKMETQMKGLESKFRQVEDDRKSLSA 96 (101)
T ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHhcCHHHhhh
Confidence 4555555555554444333332344578888888888888888887777665
No 131
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=28.55 E-value=4e+02 Score=28.66 Aligned_cols=43 Identities=19% Similarity=0.354 Sum_probs=29.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 97 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~ 97 (279)
.++.-+++|++++..|..+|..|+......+.++..+.+++..
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~ 468 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRD 468 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777777777777777777777666666553
No 132
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=28.37 E-value=2.4e+02 Score=25.19 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 70 LMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQ 102 (279)
Q Consensus 70 L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQ 102 (279)
|..|..+|+.+......++..++..+..+++++
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~ 134 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQRL 134 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433
No 133
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=28.13 E-value=99 Score=27.07 Aligned_cols=18 Identities=11% Similarity=-0.016 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023639 61 ERLKRDRNVLMAEIVRLR 78 (279)
Q Consensus 61 e~Lkrd~~~L~~El~~LR 78 (279)
++|+.+.+.|+.+|...|
T Consensus 37 ~~L~~El~~L~~~i~~Ar 54 (160)
T PRK06342 37 KALEDQLAQARAAYEAAQ 54 (160)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555554444
No 134
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=28.09 E-value=2.8e+02 Score=22.02 Aligned_cols=43 Identities=23% Similarity=0.434 Sum_probs=31.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 97 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~ 97 (279)
.+++-++.+++....|..++..+..+......++..+...++.
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 84 SLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677778888888888887777777777777776666554
No 135
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=27.93 E-value=67 Score=22.13 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCCchHHHHHH
Q 023639 102 QQQMMTFLAKALKNPSFFQQLAQ 124 (279)
Q Consensus 102 QqQm~sFLakal~nP~Fl~~L~~ 124 (279)
.+++..||.++-.||.|-.+|..
T Consensus 3 ~~~l~~Fl~~~~~d~~l~~~l~~ 25 (49)
T PF07862_consen 3 IESLKAFLEKVKSDPELREQLKA 25 (49)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHh
Confidence 35688999999999999988876
No 136
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=27.92 E-value=2.6e+02 Score=29.83 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 67 RNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 105 (279)
Q Consensus 67 ~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm 105 (279)
+..|..||.+||-..+.++.+|..++.-+...|...++|
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~ 119 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREVSRQEASREQM 119 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555554444444444444433
No 137
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=27.88 E-value=2.4e+02 Score=21.57 Aligned_cols=42 Identities=19% Similarity=0.318 Sum_probs=30.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 96 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~ 96 (279)
..+.-++.|+.+...+..+|.+|+.+...+..++..++..|.
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777788888888888888777777777776666554
No 138
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=27.81 E-value=1.5e+02 Score=28.36 Aligned_cols=36 Identities=19% Similarity=0.392 Sum_probs=21.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSA 90 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~ 90 (279)
.++.+++.|++++..|..|+..++.+....+..+.+
T Consensus 36 ~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~ 71 (308)
T PF11382_consen 36 SLEDQFDSLREENDELRAELDALQAQLNAADQFIAA 71 (308)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777666666665555444433333
No 139
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=27.81 E-value=3.7e+02 Score=22.60 Aligned_cols=49 Identities=18% Similarity=0.326 Sum_probs=37.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQ 103 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQq 103 (279)
.|...|.++.-+...|..|+.+|.++.......|..+..+...++..-.
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~ 68 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKK 68 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777888888888888888888888888888777766644433
No 140
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=27.73 E-value=3.6e+02 Score=22.89 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 67 RNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 96 (279)
Q Consensus 67 ~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~ 96 (279)
...|..|+.+.....+....+|+.|+..++
T Consensus 43 l~lLq~e~~~~e~~le~d~~~L~~Le~~~~ 72 (160)
T PF13094_consen 43 LELLQEEIEKEEAALERDYEYLQELEKNAK 72 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333333333333333333
No 141
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=27.34 E-value=1.9e+02 Score=29.75 Aligned_cols=60 Identities=22% Similarity=0.287 Sum_probs=45.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALK 114 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLakal~ 114 (279)
.+..|.+..|++......|+.++|.+-..++..+.+++.||+.+.+.=.-.-+--+.|+.
T Consensus 376 ql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala 435 (522)
T PF05701_consen 376 QLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALA 435 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788888888999999999999999999999999999876554444444444333
No 142
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.24 E-value=4.2e+02 Score=25.02 Aligned_cols=24 Identities=29% Similarity=0.600 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCCchHHHHHHhH
Q 023639 103 QQMMTFLAKALKNPSFFQQLAQSN 126 (279)
Q Consensus 103 qQm~sFLakal~nP~Fl~~L~~~~ 126 (279)
..|++||.+.+..|..+..|+...
T Consensus 187 ~~m~~~l~~e~e~~~~l~~Lv~AQ 210 (248)
T cd07619 187 ADMYSFVAKEIDYANYFQTLIEVQ 210 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999998753
No 143
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=27.24 E-value=3.2e+02 Score=21.68 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q 023639 59 ELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDR-----LLSTEKKQQQMMTFLAKA 112 (279)
Q Consensus 59 Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~R-----l~~~E~kQqQm~sFLaka 112 (279)
.++++.+|......-|..+..+....+.+...++-- |+++-.-..++..||...
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~EIv~~VR~~~mtp~eL~~~L~~~ 60 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTEAENLEIVQMVRSMKMTPEELAAFLRAM 60 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
No 144
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=27.20 E-value=2.9e+02 Score=22.17 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSA 90 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~ 90 (279)
-.+.++++++..|..|...|+.+....+.++.+
T Consensus 23 ~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn 55 (87)
T PF10883_consen 23 WKVKKAKKQNAKLQKENEQLKTEKAVAETQVKN 55 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777766666555544444
No 145
>PHA01819 hypothetical protein
Probab=27.12 E-value=86 Score=26.18 Aligned_cols=34 Identities=35% Similarity=0.497 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Q 023639 85 RDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQ 121 (279)
Q Consensus 85 ~~ql~~m~~Rl~~~E~kQqQm~sFLakal~nP~Fl~~ 121 (279)
+..-..+++||.++| |||..||..-++-|.-+++
T Consensus 69 kfdpvvleqri~sle---qq~ttflssq~qqpqqvqq 102 (129)
T PHA01819 69 KFDPVVLEQRIASLE---QQVTTFLSSQMQQPQQVQQ 102 (129)
T ss_pred ccchHHHHHHHHHHH---HHHHHHHHHHhhCchhhhh
Confidence 344456888888887 5899999988887765443
No 146
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=26.60 E-value=2.6e+02 Score=29.03 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 59 ELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQ 103 (279)
Q Consensus 59 Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQq 103 (279)
++++.|...+.+..|+-.|.+.+..++..-+.+++|++..--|+.
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~ 392 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLK 392 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666777777777777766666666666666655444443
No 147
>PRK00846 hypothetical protein; Provisional
Probab=26.39 E-value=3e+02 Score=21.64 Aligned_cols=13 Identities=8% Similarity=-0.107 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHh
Q 023639 101 KQQQMMTFLAKAL 113 (279)
Q Consensus 101 kQqQm~sFLakal 113 (279)
+|++.+.-|.+.+
T Consensus 38 ~qq~~I~~L~~ql 50 (77)
T PRK00846 38 DARLTGARNAELI 50 (77)
T ss_pred HHHHHHHHHHHHH
Confidence 3555555555433
No 148
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=26.24 E-value=1.8e+02 Score=28.72 Aligned_cols=49 Identities=12% Similarity=0.243 Sum_probs=28.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQ 103 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQq 103 (279)
+....|..|+...+.|..+|..|+.--.....+|..|+.||..+|...-
T Consensus 109 ~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~~s 157 (326)
T PF04582_consen 109 DHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESGSS 157 (326)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcCCC
Confidence 3455666677777777777777777777777777777777777775443
No 149
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=25.51 E-value=2.9e+02 Score=23.89 Aligned_cols=42 Identities=19% Similarity=0.303 Sum_probs=34.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 96 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~ 96 (279)
.++.=.+.|...++.|..+|..|+.+......+|++++..|-
T Consensus 78 ~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~LY 119 (131)
T KOG1760|consen 78 KLDKLQDQLEEKKETLEKEIEELESELESISARMDELKKVLY 119 (131)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788899999999999999999998888888776654
No 150
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=25.24 E-value=2.1e+02 Score=29.95 Aligned_cols=13 Identities=23% Similarity=0.312 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 023639 59 ELERLKRDRNVLM 71 (279)
Q Consensus 59 Ele~Lkrd~~~L~ 71 (279)
-++.|.++..-|+
T Consensus 500 S~eTll~niq~ll 512 (641)
T KOG3915|consen 500 SIETLLTNIQGLL 512 (641)
T ss_pred hHHHHHHHHHHHH
Confidence 3445554444433
No 151
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=25.24 E-value=3.9e+02 Score=28.62 Aligned_cols=55 Identities=22% Similarity=0.293 Sum_probs=35.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFL 109 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFL 109 (279)
.+..+|++|+.+...|..+|..+..+-...+..+..|.+.+..+.+||-=+-+|=
T Consensus 83 ~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~ 137 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYS 137 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666666666666666666667777777666665444443
No 152
>smart00338 BRLZ basic region leucin zipper.
Probab=25.20 E-value=2.7e+02 Score=20.12 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023639 61 ERLKRDRNVLMAEIVRLRQHQQ 82 (279)
Q Consensus 61 e~Lkrd~~~L~~El~~LRqqq~ 82 (279)
..|......|..|...|+.+..
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~ 50 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIE 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334433333333333
No 153
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=25.19 E-value=3.7e+02 Score=21.74 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRL--RQHQQQSRDQLSAMEDRLLSTEKKQQQM 105 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~L--Rqqq~~~~~ql~~m~~Rl~~~E~kQqQm 105 (279)
..+....+-...|..++..| ++.-...+..|..|+.++..++.+=+.|
T Consensus 42 ~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 42 ERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33333356666666666666 6666666666666666666666554444
No 154
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=25.15 E-value=4.7e+02 Score=22.96 Aligned_cols=46 Identities=26% Similarity=0.365 Sum_probs=34.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 100 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~ 100 (279)
....|++.|+.|+..|..+..+-++....++..+..+++-.++-.+
T Consensus 47 ~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k 92 (158)
T PF09744_consen 47 EHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERK 92 (158)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888999999999988887777777777777766666555433
No 155
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=25.03 E-value=4.1e+02 Score=28.03 Aligned_cols=42 Identities=21% Similarity=0.322 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 57 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLST 98 (279)
Q Consensus 57 ~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~ 98 (279)
..|.+.|.+.+..|..|+..|+.+....+..|...+++...+
T Consensus 149 qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L 190 (546)
T PF07888_consen 149 QKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQL 190 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555444444444444444444443333
No 156
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=24.88 E-value=3e+02 Score=22.63 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 63 LKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLST 98 (279)
Q Consensus 63 Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~ 98 (279)
|-.+...|...|..|=.+....+.+...|.+||...
T Consensus 20 l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 20 LLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333444444444433
No 157
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=24.88 E-value=4.1e+02 Score=25.98 Aligned_cols=60 Identities=15% Similarity=0.397 Sum_probs=38.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLR------------------QHQQQSRDQLSAM----EDRLLSTEKKQQQMMTFLAKA 112 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LR------------------qqq~~~~~ql~~m----~~Rl~~~E~kQqQm~sFLaka 112 (279)
.|-..+..|..+|..|..|..+|+ +|...+..+|..+ ..+.....+.|.+|.+.++++
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqi 243 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQI 243 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777777777777777 2333333444433 334445567778899988887
Q ss_pred hc
Q 023639 113 LK 114 (279)
Q Consensus 113 l~ 114 (279)
+.
T Consensus 244 vd 245 (306)
T PF04849_consen 244 VD 245 (306)
T ss_pred HH
Confidence 76
No 158
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=24.70 E-value=3.1e+02 Score=20.61 Aligned_cols=40 Identities=8% Similarity=0.295 Sum_probs=19.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 95 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl 95 (279)
+.+|+.+.|..+..+..-|..-..+......+|..|+.++
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555444444444444444444443
No 159
>PRK10722 hypothetical protein; Provisional
Probab=24.55 E-value=2.9e+02 Score=26.31 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023639 79 QHQQQSRDQLSAMEDRLLSTE 99 (279)
Q Consensus 79 qqq~~~~~ql~~m~~Rl~~~E 99 (279)
+-|+.++.+|..+.+....+.
T Consensus 169 rLQq~sD~qlD~lrqq~~~Lq 189 (247)
T PRK10722 169 KLQQSSDSELDALRQQQQRLQ 189 (247)
T ss_pred HHhhccHHHHHHHHHHHHHHH
Confidence 334444666655555444433
No 160
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=24.42 E-value=1.5e+02 Score=21.34 Aligned_cols=31 Identities=16% Similarity=0.466 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 77 LRQHQQQSRDQLSAMEDRLLSTEKKQQQMMT 107 (279)
Q Consensus 77 LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~s 107 (279)
|++.+.+++..+..+.+.+..++.|.+.++.
T Consensus 10 Lqe~~d~IEqkiedid~qIaeLe~KR~~Lv~ 40 (46)
T PF08946_consen 10 LQEHYDNIEQKIEDIDEQIAELEAKRQRLVD 40 (46)
T ss_dssp -----THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777777666543
No 161
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=23.84 E-value=1.8e+02 Score=24.91 Aligned_cols=36 Identities=22% Similarity=0.318 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 59 ELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDR 94 (279)
Q Consensus 59 Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~R 94 (279)
-+++|+.+...=-.||..||.+.......-..|+.|
T Consensus 95 ~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 95 VVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344555555555555556655555544444444444
No 162
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=23.76 E-value=4.9e+02 Score=23.79 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 023639 95 LLSTEKKQQQMMTFLA 110 (279)
Q Consensus 95 l~~~E~kQqQm~sFLa 110 (279)
|..=-.|+++++.+|.
T Consensus 171 l~eE~~k~K~~~l~Lv 186 (192)
T PF09727_consen 171 LEEERTKLKSFVLMLV 186 (192)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344455444443
No 163
>PRK04406 hypothetical protein; Provisional
Probab=23.76 E-value=3.3e+02 Score=20.99 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhc
Q 023639 100 KKQQQMMTFLAKALK 114 (279)
Q Consensus 100 ~kQqQm~sFLakal~ 114 (279)
-+|++.+.-|.+-++
T Consensus 35 ~~Qq~~I~~L~~ql~ 49 (75)
T PRK04406 35 SQQQLLITKMQDQMK 49 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 346666666665444
No 164
>PRK10698 phage shock protein PspA; Provisional
Probab=23.52 E-value=3.6e+02 Score=24.58 Aligned_cols=41 Identities=20% Similarity=0.342 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 67 RNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMT 107 (279)
Q Consensus 67 ~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~s 107 (279)
...|..++...+.....++.++..|+.+|..++.|+..+++
T Consensus 101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~a 141 (222)
T PRK10698 101 IATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALML 141 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555566666666666666665554
No 165
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=23.49 E-value=3.5e+02 Score=21.73 Aligned_cols=43 Identities=16% Similarity=0.431 Sum_probs=28.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 97 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~ 97 (279)
..++-+..|+.....|...|..|..+....+.++..++..|+.
T Consensus 64 ~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 64 DKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556667777777777777777777766666666666554
No 166
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=23.36 E-value=2.1e+02 Score=23.83 Aligned_cols=27 Identities=33% Similarity=0.342 Sum_probs=13.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQ 82 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~ 82 (279)
+-.++..||.....|..|-+.||-+.+
T Consensus 20 l~~el~~LK~~~~el~EEN~~L~iEN~ 46 (110)
T PRK13169 20 LLKELGALKKQLAELLEENTALRLEND 46 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555554444443
No 167
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=23.30 E-value=3.9e+02 Score=21.36 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 66 DRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 97 (279)
Q Consensus 66 d~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~ 97 (279)
.+.....||.+|+.+...+...+..++++|..
T Consensus 75 ~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 75 KKEEKEAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555554444444444444443
No 168
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.25 E-value=59 Score=31.95 Aligned_cols=37 Identities=35% Similarity=0.508 Sum_probs=0.0
Q ss_pred ChhhhHhhhhhccCCCcccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHH
Q 023639 22 GQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRL 77 (279)
Q Consensus 22 Gq~hLLknIkRRk~~s~~~~~~~~~~~~e~g~~~l~~Ele~Lkrd~~~L~~El~~L 77 (279)
+.+.-|.+|+|||.. |.+||++||.+....+.||-.+
T Consensus 14 ~E~~eL~~ir~rk~q-------------------L~deIq~Lk~Ei~ev~~eid~~ 50 (395)
T KOG0930|consen 14 EERMELENIRRRKQE-------------------LLDEIQRLKDEIAEVMEEIDNL 50 (395)
T ss_pred HHHHhHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHhhhh
No 169
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=23.22 E-value=5e+02 Score=22.59 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=27.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLST 98 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~ 98 (279)
..++-++.|++..+.|...+.+|.+.......++..+.+-++..
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~ 134 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQL 134 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888888777777766665555555555544444443
No 170
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=22.89 E-value=5.6e+02 Score=23.02 Aligned_cols=43 Identities=9% Similarity=0.254 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 65 RDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMT 107 (279)
Q Consensus 65 rd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~s 107 (279)
.....|..++..++.....++.+|..|+.++..+..++..+++
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~a 141 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAI 141 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666677777777777666665554
No 171
>PRK14160 heat shock protein GrpE; Provisional
Probab=22.86 E-value=6.1e+02 Score=23.41 Aligned_cols=41 Identities=20% Similarity=0.283 Sum_probs=26.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 96 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~ 96 (279)
+..+++.|+.+...|..++..++.+..-+.+...+...|..
T Consensus 59 l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~ 99 (211)
T PRK14160 59 LKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTA 99 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666654
No 172
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=22.70 E-value=1.8e+02 Score=27.20 Aligned_cols=35 Identities=14% Similarity=0.288 Sum_probs=21.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSA 90 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~ 90 (279)
+...-+|.|.-+..|..|+.+++++....+.++..
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~ 118 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVES 118 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777777776666655554444444
No 173
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=22.58 E-value=4.3e+02 Score=25.45 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 65 RDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 99 (279)
Q Consensus 65 rd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E 99 (279)
.+...+..|+.+..+....++.++.++..||..+|
T Consensus 207 ~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 207 EELEELEEELKQKEKEVKEIKERITEMKGRLGELE 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444
No 174
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=22.42 E-value=5.1e+02 Score=23.95 Aligned_cols=50 Identities=20% Similarity=0.322 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMT 107 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~s 107 (279)
.++..|......+..++..++..-..++.++..++.+|..++.+...+..
T Consensus 92 ~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~a 141 (225)
T COG1842 92 EEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKA 141 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666666666777777666665555443
No 175
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=22.31 E-value=85 Score=22.97 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCchHHHHHH
Q 023639 103 QQMMTFLAKALKNPSFFQQLAQ 124 (279)
Q Consensus 103 qQm~sFLakal~nP~Fl~~L~~ 124 (279)
+++-.||.++..||.|-.+|..
T Consensus 2 e~l~~Fl~~~~~d~~L~~~l~~ 23 (64)
T TIGR03798 2 EQLKAFLEKVKTDPDLREKLKA 23 (64)
T ss_pred HHHHHHHHHHHcCHHHHHHHHH
Confidence 4678999999999999998876
No 176
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.23 E-value=4e+02 Score=21.04 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023639 67 RNVLMAEIVRLRQHQQQSRDQLS 89 (279)
Q Consensus 67 ~~~L~~El~~LRqqq~~~~~ql~ 89 (279)
...|..||-.|+.+.+......+
T Consensus 20 I~LLQmEieELKEknn~l~~e~q 42 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHH
Confidence 45566666666655554433333
No 177
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=22.19 E-value=3.7e+02 Score=28.36 Aligned_cols=43 Identities=28% Similarity=0.448 Sum_probs=39.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 97 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~ 97 (279)
.++.|+..+|++...|..|+.+||.+...+..+|+.+...+..
T Consensus 152 ~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 152 ELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999998877654
No 178
>PRK00295 hypothetical protein; Provisional
Probab=22.12 E-value=3.5e+02 Score=20.36 Aligned_cols=9 Identities=33% Similarity=0.427 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 023639 102 QQQMMTFLA 110 (279)
Q Consensus 102 QqQm~sFLa 110 (279)
|++.+.-|.
T Consensus 31 Qq~~I~~L~ 39 (68)
T PRK00295 31 QQRVIERLQ 39 (68)
T ss_pred HHHHHHHHH
Confidence 333333333
No 179
>PHA01750 hypothetical protein
Probab=22.02 E-value=3e+02 Score=21.48 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 65 RDRNVLMAEIVRLRQHQQQSRDQL 88 (279)
Q Consensus 65 rd~~~L~~El~~LRqqq~~~~~ql 88 (279)
.+...|..|+..++-+|.+...|+
T Consensus 42 ~ELdNL~~ei~~~kikqDnl~~qv 65 (75)
T PHA01750 42 SELDNLKTEIEELKIKQDELSRQV 65 (75)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333334444444443343333333
No 180
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=21.98 E-value=3.9e+02 Score=25.19 Aligned_cols=57 Identities=19% Similarity=0.238 Sum_probs=35.6
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 52 GQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAK 111 (279)
Q Consensus 52 g~~~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLak 111 (279)
++..+..++..|+-++..|..-|..++.++...+. .-+++.+.-|+|-..-+.||.+
T Consensus 186 ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~---r~~E~r~ieEkk~~eei~fLk~ 242 (259)
T KOG4001|consen 186 EKTRATTEWKVLEDKKKELELKIAQLKKKLETDEI---RSEEEREIEEKKMKEEIEFLKE 242 (259)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777777777777777777666655432 2234555666777777777764
No 181
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=21.94 E-value=5.9e+02 Score=24.03 Aligned_cols=58 Identities=22% Similarity=0.413 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhcC
Q 023639 58 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS--------TEKKQQQMMTFLAKALKN 115 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~--------~E~kQqQm~sFLakal~n 115 (279)
+|++.|++++..+..++..+.++|..-+.++.++.--|.. .++-++-.+.+|...+.+
T Consensus 43 ee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~ 108 (230)
T PF03904_consen 43 EEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKD 108 (230)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 182
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=21.88 E-value=5.5e+02 Score=22.56 Aligned_cols=7 Identities=14% Similarity=0.316 Sum_probs=2.8
Q ss_pred hHHHHHH
Q 023639 118 FFQQLAQ 124 (279)
Q Consensus 118 Fl~~L~~ 124 (279)
.|.++|.
T Consensus 177 Lv~Rwm~ 183 (194)
T PF08614_consen 177 LVERWMQ 183 (194)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344443
No 183
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=21.84 E-value=2.4e+02 Score=20.19 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 023639 87 QLSAMEDRLLSTEKKQ 102 (279)
Q Consensus 87 ql~~m~~Rl~~~E~kQ 102 (279)
.|.+|..||+.+|.++
T Consensus 31 kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 31 KLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4778888888888765
No 184
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=21.83 E-value=5e+02 Score=22.56 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=7.8
Q ss_pred CCccCChhhhHhhhhh
Q 023639 17 EGFLGGQKHLLKTIKR 32 (279)
Q Consensus 17 e~F~RGq~hLLknIkR 32 (279)
.+|-..|..-+-.+-+
T Consensus 14 ~Gft~~QAe~i~~~l~ 29 (177)
T PF07798_consen 14 AGFTEEQAEAIMKALR 29 (177)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 3555555554444333
No 185
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=21.75 E-value=3.3e+02 Score=27.89 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCchHHHHHHhH
Q 023639 70 LMAEIVRLRQHQQQSRDQLSAMEDRLLS-TEKKQQQMMTFLAKALKNPSFFQQLAQSN 126 (279)
Q Consensus 70 L~~El~~LRqqq~~~~~ql~~m~~Rl~~-~E~kQqQm~sFLakal~nP~Fl~~L~~~~ 126 (279)
...|+.||++=.+.+..+|..+.+++.. ....+..++..=..++++|.|+.......
T Consensus 279 ~e~E~~Rl~~Al~~a~~eL~~l~~~~~~~~g~~~a~If~ah~~lL~D~~l~~~v~~~I 336 (473)
T PRK11377 279 VEEEQERLRQAIDFTLLDLMTLTAKAEASGLDDIAAIFSGHHTLLDDPELLAAASERL 336 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3456666666666666677777666643 12344568888888999999998876654
No 186
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=21.70 E-value=5.2e+02 Score=22.18 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=20.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 99 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E 99 (279)
+..++..++.+...+..++...+......+.....+.+.+..+.
T Consensus 107 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 107 LESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554444444444444444444444444444443
No 187
>PRK14148 heat shock protein GrpE; Provisional
Probab=21.68 E-value=6.1e+02 Score=23.03 Aligned_cols=45 Identities=13% Similarity=0.260 Sum_probs=36.5
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 53 QYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 97 (279)
Q Consensus 53 ~~~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~ 97 (279)
...++.+++.|......|..++..++.+..-+.....+...|...
T Consensus 35 ~~~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~r 79 (195)
T PRK14148 35 ELSVEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAER 79 (195)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888888888888888888888888764
No 188
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.57 E-value=2.3e+02 Score=24.74 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 67 RNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 99 (279)
Q Consensus 67 ~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E 99 (279)
...+..|+.+|+++....+..+.+|+.+..++.
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666655543
No 189
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.50 E-value=39 Score=34.81 Aligned_cols=19 Identities=37% Similarity=0.740 Sum_probs=15.6
Q ss_pred CceeeccCC-ccCChhhhHh
Q 023639 10 DRWEFANEG-FLGGQKHLLK 28 (279)
Q Consensus 10 drWEFaNe~-F~RGq~hLLk 28 (279)
-||||.|+- |+|++.-|--
T Consensus 195 vRWEfk~p~PFlRtrEFLWQ 214 (551)
T KOG4163|consen 195 VRWEFKHPQPFLRTREFLWQ 214 (551)
T ss_pred eeeeccCCCcchhhhHHHHh
Confidence 389999994 9999887753
No 190
>PF15294 Leu_zip: Leucine zipper
Probab=21.47 E-value=6.7e+02 Score=24.24 Aligned_cols=45 Identities=22% Similarity=0.398 Sum_probs=23.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 100 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~ 100 (279)
+..||.+|+.+|..|..-+..+..+.-..-..=..++..|..+..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666665555555544433333344444444433
No 191
>PLN02281 chlorophyllide a oxygenase
Probab=21.33 E-value=2e+02 Score=30.23 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 60 LERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLA 110 (279)
Q Consensus 60 le~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLa 110 (279)
|+.||++...|..||.+..+| +.--|.|+..+=.|--+|-+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 166 (536)
T PLN02281 123 IGTVKKELAGLQEELSKAHQQ-------VHISEARVSTALDKLAHMEELVN 166 (536)
T ss_pred HHHHHHHHHHHHHHHHHHhhh-------hhhHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555555555444 44455566666555555555443
No 192
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=21.28 E-value=5.2e+02 Score=24.39 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 69 VLMAEIVRLRQHQQQSRDQLSAMEDR 94 (279)
Q Consensus 69 ~L~~El~~LRqqq~~~~~ql~~m~~R 94 (279)
.+..++..++.+....+.++...+.+
T Consensus 148 ~l~~~i~~~~~~i~~~~~~l~~~~~~ 173 (423)
T TIGR01843 148 LILAQIKQLEAELAGLQAQLQALRQQ 173 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 193
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=21.14 E-value=4.2e+02 Score=27.28 Aligned_cols=55 Identities=13% Similarity=0.288 Sum_probs=36.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 54 YGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAK 111 (279)
Q Consensus 54 ~~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLak 111 (279)
..+..++.+|.++...+..-+ -..++....|...|+..+..|...+.-|..||..
T Consensus 425 ~~l~~~i~~l~~~i~~~~~rl---~~~e~~~~~qf~~m~~~~~~m~sq~~~L~q~l~~ 479 (483)
T COG1345 425 DSLNKQIKSLDKDIKSLDKRL---EAAEERYKTQFNTLDDMMTQMNSQSSYLTQQLVS 479 (483)
T ss_pred cchhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357777777777777777444 3444555667777777777777777667666653
No 194
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=20.65 E-value=2.3e+02 Score=22.30 Aligned_cols=34 Identities=21% Similarity=0.413 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAM 91 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m 91 (279)
+++-.|-.++..|..++..||.++.....++...
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~ 62 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELSKEIGKL 62 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4555566666666666666666666655555443
No 195
>PRK15396 murein lipoprotein; Provisional
Probab=20.63 E-value=4.3e+02 Score=20.78 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAME 92 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~ 92 (279)
.+++.|..+.+.|..++..+.+..+..+..+++-+
T Consensus 25 ~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~ 59 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAK 59 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666666666666666666666666555433
No 196
>smart00727 STI1 Heat shock chaperonin-binding motif.
Probab=20.31 E-value=1e+02 Score=20.31 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCchHHHHHH
Q 023639 104 QMMTFLAKALKNPSFFQQLAQ 124 (279)
Q Consensus 104 Qm~sFLakal~nP~Fl~~L~~ 124 (279)
.+...+..+.+||.++..+++
T Consensus 12 ~~~~~l~~~~~nP~~~~~~~~ 32 (41)
T smart00727 12 QVQSLLQDMQQNPDMLAQMLQ 32 (41)
T ss_pred HHHHHHHHHHHCHHHHHHHHH
Confidence 344555677889999998886
No 197
>PRK14143 heat shock protein GrpE; Provisional
Probab=20.30 E-value=7.2e+02 Score=23.28 Aligned_cols=43 Identities=14% Similarity=0.204 Sum_probs=33.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 97 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~ 97 (279)
....++..|+.+...|..|+..++.++..+...+.++..|...
T Consensus 64 ~~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~k 106 (238)
T PRK14143 64 DNAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSR 106 (238)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888888888888888888887777788888877654
No 198
>PRK14011 prefoldin subunit alpha; Provisional
Probab=20.22 E-value=5.7e+02 Score=22.08 Aligned_cols=38 Identities=8% Similarity=0.136 Sum_probs=21.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAME 92 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~ 92 (279)
.+++-++-+++....|..-+.+|-...+.....+..+.
T Consensus 85 ~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~ 122 (144)
T PRK14011 85 DVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLR 122 (144)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666555555555555455555444
No 199
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=20.21 E-value=1.9e+02 Score=22.26 Aligned_cols=30 Identities=27% Similarity=0.353 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 71 MAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 100 (279)
Q Consensus 71 ~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~ 100 (279)
..|.--++.-...++.+|.+|+.||..+|.
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445666777777788888888888887774
No 200
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=20.04 E-value=52 Score=27.09 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=28.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLA 110 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLa 110 (279)
-+..|-.-......|..++.++...|. .|++.|..+|..|..+-.+|.
T Consensus 48 wDr~Lv~n~~~I~~L~~~v~~~~~~Q~-------~ld~~L~~ie~qQ~eLe~~L~ 95 (116)
T PF05064_consen 48 WDRQLVENGEKISKLYSEVQKAESEQK-------RLDQELDFIEAQQKELEELLD 95 (116)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444556667777776666664 455666666666766665554
Done!