Query 023639
Match_columns 279
No_of_seqs 172 out of 416
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 10:17:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023639.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023639hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jee_A YIIU; FTSZ, septum, coi 81.8 4.4 0.00015 31.1 6.7 26 56-81 25-50 (81)
2 3e98_A GAF domain of unknown f 77.7 6.2 0.00021 35.3 7.4 80 12-118 39-118 (252)
3 2yy0_A C-MYC-binding protein; 76.7 5 0.00017 28.2 5.2 31 58-88 19-49 (53)
4 2wt7_A Proto-oncogene protein 71.6 8 0.00027 27.6 5.3 32 55-86 27-58 (63)
5 2yy0_A C-MYC-binding protein; 69.8 8.9 0.0003 26.9 5.1 30 66-95 20-49 (53)
6 3tnu_B Keratin, type II cytosk 69.7 32 0.0011 27.4 9.2 43 55-97 33-75 (129)
7 1t2k_D Cyclic-AMP-dependent tr 68.6 8.9 0.0003 27.0 5.0 33 55-87 26-58 (61)
8 2wt7_B Transcription factor MA 68.2 11 0.00038 29.3 5.8 71 18-97 17-87 (90)
9 1deb_A APC protein, adenomatou 67.2 23 0.00079 25.0 6.7 41 56-96 8-48 (54)
10 1a93_B MAX protein, coiled coi 67.1 8.7 0.0003 25.0 4.2 29 63-91 5-33 (34)
11 3tnu_A Keratin, type I cytoske 65.5 31 0.0011 27.6 8.3 42 56-97 36-77 (131)
12 1kd8_B GABH BLL, GCN4 acid bas 65.3 11 0.00039 24.7 4.5 29 56-84 6-34 (36)
13 2v66_B Nuclear distribution pr 64.6 48 0.0016 26.6 9.1 44 67-110 37-80 (111)
14 4dzn_A Coiled-coil peptide CC- 64.2 7.9 0.00027 24.5 3.5 21 58-78 9-29 (33)
15 3m48_A General control protein 63.8 7.9 0.00027 25.1 3.5 24 56-79 5-28 (33)
16 3i00_A HIP-I, huntingtin-inter 63.7 18 0.00063 29.2 6.6 41 56-99 13-53 (120)
17 3hnw_A Uncharacterized protein 61.9 29 0.00098 28.5 7.5 33 59-91 76-108 (138)
18 4dzn_A Coiled-coil peptide CC- 59.2 21 0.00073 22.5 4.8 21 58-78 2-22 (33)
19 3q8t_A Beclin-1; autophagy, AT 59.2 53 0.0018 25.3 8.2 46 55-100 8-53 (96)
20 2jee_A YIIU; FTSZ, septum, coi 57.8 27 0.00092 26.7 6.2 13 70-82 25-37 (81)
21 1jnm_A Proto-oncogene C-JUN; B 56.8 7.8 0.00027 27.5 2.9 31 55-85 26-56 (62)
22 1ci6_A Transcription factor AT 55.6 19 0.00064 25.7 4.7 30 55-84 27-56 (63)
23 1kd8_A GABH AIV, GCN4 acid bas 55.5 21 0.00073 23.4 4.5 29 56-84 6-34 (36)
24 1wt6_A Myotonin-protein kinase 55.1 33 0.0011 26.3 6.2 41 54-98 17-57 (81)
25 2dgc_A Protein (GCN4); basic d 54.9 8.7 0.0003 27.7 2.9 27 55-81 34-60 (63)
26 4emc_A Monopolin complex subun 54.3 42 0.0014 29.4 7.6 58 67-124 22-79 (190)
27 3hnw_A Uncharacterized protein 54.2 68 0.0023 26.2 8.6 44 56-99 66-109 (138)
28 3he5_B Synzip2; heterodimeric 54.0 35 0.0012 23.5 5.6 38 56-93 8-45 (52)
29 4etp_A Kinesin-like protein KA 52.2 56 0.0019 31.0 8.8 49 59-107 4-52 (403)
30 3na7_A HP0958; flagellar bioge 51.0 70 0.0024 28.0 8.8 45 57-101 38-82 (256)
31 3c3g_A Alpha/beta peptide with 50.4 18 0.00062 23.3 3.5 24 56-79 5-28 (33)
32 3c3f_A Alpha/beta peptide with 49.9 19 0.00063 23.4 3.5 24 56-79 6-29 (34)
33 1hks_A Heat-shock transcriptio 49.2 3 0.0001 32.7 -0.5 10 1-10 64-73 (106)
34 2wq1_A General control protein 48.5 20 0.00069 23.1 3.5 24 56-79 5-28 (33)
35 1uo4_A General control protein 48.1 21 0.0007 23.2 3.5 24 56-79 6-29 (34)
36 1c1g_A Tropomyosin; contractIl 46.5 1E+02 0.0035 24.9 8.6 33 58-90 13-45 (284)
37 2oxj_A Hybrid alpha/beta pepti 46.2 21 0.00072 23.2 3.3 24 56-79 6-29 (34)
38 1hjb_A Ccaat/enhancer binding 46.0 27 0.00093 26.8 4.6 27 56-82 41-67 (87)
39 2w83_C C-JUN-amino-terminal ki 45.8 25 0.00087 26.7 4.2 40 55-94 34-73 (77)
40 2bni_A General control protein 45.3 24 0.00082 22.9 3.5 24 56-79 6-29 (34)
41 2hy6_A General control protein 45.1 24 0.00084 22.9 3.5 24 56-79 6-29 (34)
42 2ldu_A Heat shock factor prote 44.7 4.1 0.00014 33.0 -0.3 9 1-9 77-85 (125)
43 3uux_B Mitochondrial division 43.4 1.3E+02 0.0043 27.3 9.1 66 60-125 151-216 (242)
44 2xdj_A Uncharacterized protein 43.3 64 0.0022 24.4 6.3 41 70-110 25-65 (83)
45 1nkp_B MAX protein, MYC proto- 43.0 27 0.00093 25.7 4.1 32 58-89 47-78 (83)
46 3oja_B Anopheles plasmodium-re 42.2 60 0.0021 31.0 7.4 45 56-100 507-551 (597)
47 1nkp_A C-MYC, MYC proto-oncoge 40.3 52 0.0018 24.8 5.4 34 58-91 52-85 (88)
48 3na7_A HP0958; flagellar bioge 39.7 92 0.0032 27.3 7.7 14 218-231 205-218 (256)
49 3u06_A Protein claret segregat 39.1 1.2E+02 0.0039 29.0 8.8 45 63-107 8-52 (412)
50 3mq7_A Bone marrow stromal ant 38.6 46 0.0016 27.2 5.0 9 71-79 77-85 (121)
51 1wle_A Seryl-tRNA synthetase; 37.0 1.4E+02 0.0048 29.3 9.2 89 19-110 45-147 (501)
52 2v71_A Nuclear distribution pr 36.9 2.1E+02 0.0071 24.8 10.8 43 67-109 90-132 (189)
53 1wt6_A Myotonin-protein kinase 36.7 1.2E+02 0.004 23.2 6.7 39 67-105 16-57 (81)
54 3swf_A CGMP-gated cation chann 36.5 1.3E+02 0.0044 22.6 6.8 45 55-102 4-48 (74)
55 2v71_A Nuclear distribution pr 35.6 2.1E+02 0.0072 24.8 9.1 52 56-107 47-109 (189)
56 1lwu_C Fibrinogen gamma chain; 35.5 90 0.0031 29.1 7.2 30 69-98 9-38 (323)
57 2r2v_A GCN4 leucine zipper; co 35.5 42 0.0015 21.7 3.5 24 56-79 6-29 (34)
58 1go4_E MAD1 (mitotic arrest de 35.4 70 0.0024 25.2 5.5 31 58-88 12-42 (100)
59 2dq0_A Seryl-tRNA synthetase; 34.7 94 0.0032 29.9 7.5 57 54-110 41-100 (455)
60 1ic2_A Tropomyosin alpha chain 34.6 1.3E+02 0.0046 21.9 7.2 7 90-96 45-51 (81)
61 3u1c_A Tropomyosin alpha-1 cha 34.0 1.3E+02 0.0044 23.1 6.9 43 56-98 28-70 (101)
62 3a7p_A Autophagy protein 16; c 33.9 2.1E+02 0.0073 24.1 9.6 24 57-80 67-90 (152)
63 1nlw_A MAD protein, MAX dimeri 33.2 56 0.0019 24.3 4.4 31 58-88 47-77 (80)
64 1l8d_A DNA double-strand break 33.1 1.1E+02 0.0039 23.0 6.4 37 59-95 4-40 (112)
65 2zqm_A Prefoldin beta subunit 32.9 1.2E+02 0.0042 22.8 6.5 43 55-97 67-109 (117)
66 1x79_B RAB GTPase binding effe 32.1 2E+02 0.0067 23.1 8.6 49 56-107 18-66 (112)
67 1gd2_E Transcription factor PA 31.8 46 0.0016 24.5 3.7 33 56-88 34-66 (70)
68 1gu4_A CAAT/enhancer binding p 31.6 32 0.0011 25.8 2.8 26 56-81 41-66 (78)
69 1uii_A Geminin; human, DNA rep 31.1 1.3E+02 0.0044 23.0 6.2 26 57-82 45-70 (83)
70 2wt7_B Transcription factor MA 30.8 64 0.0022 25.0 4.5 25 57-81 61-85 (90)
71 3ljm_A Coil Ser L9C; de novo d 29.7 78 0.0027 19.7 3.8 23 77-99 6-28 (31)
72 3m91_A Proteasome-associated A 29.5 1.3E+02 0.0045 20.8 5.5 35 56-90 14-48 (51)
73 4e61_A Protein BIM1; EB1-like 29.3 2.1E+02 0.0074 22.7 7.9 43 68-110 7-49 (106)
74 4ani_A Protein GRPE; chaperone 29.2 2.7E+02 0.0091 24.4 8.8 40 58-97 59-98 (213)
75 3qne_A Seryl-tRNA synthetase, 29.0 1.6E+02 0.0055 28.9 8.1 66 54-119 43-112 (485)
76 4gkw_A Spindle assembly abnorm 28.8 2.4E+02 0.0081 23.7 7.9 32 59-90 47-78 (167)
77 1ji8_A Dissimilatory siroheme- 28.7 30 0.001 27.8 2.4 38 239-277 6-45 (111)
78 1dh3_A Transcription factor CR 28.7 37 0.0013 23.6 2.6 25 55-79 26-50 (55)
79 1wlq_A Geminin; coiled-coil; 2 27.9 1.3E+02 0.0044 23.1 5.7 25 58-82 38-62 (83)
80 1use_A VAsp, vasodilator-stimu 27.6 73 0.0025 21.8 3.8 23 58-80 7-30 (45)
81 3ra3_B P2F; coiled coil domain 27.5 47 0.0016 20.3 2.5 18 60-77 2-19 (28)
82 2aze_A Transcription factor DP 27.5 1.9E+02 0.0064 24.5 7.2 18 58-75 5-22 (155)
83 3swy_A Cyclic nucleotide-gated 27.5 1.5E+02 0.0051 20.2 6.7 43 56-101 3-45 (46)
84 1fxk_A Prefoldin; archaeal pro 27.0 1.2E+02 0.0041 22.5 5.5 43 55-97 62-104 (107)
85 3ra3_A P1C; coiled coil domain 26.8 69 0.0024 19.5 3.2 21 61-81 3-23 (28)
86 4etp_A Kinesin-like protein KA 26.7 1.9E+02 0.0064 27.3 7.9 38 66-103 4-41 (403)
87 2dfs_A Myosin-5A; myosin-V, in 26.5 3.6E+02 0.012 28.8 10.8 26 73-98 992-1017(1080)
88 1gu4_A CAAT/enhancer binding p 26.1 48 0.0016 24.9 2.9 22 71-92 42-63 (78)
89 3bj4_A Potassium voltage-gated 25.9 1.1E+02 0.0039 21.2 4.6 29 83-111 14-42 (49)
90 4h22_A Leucine-rich repeat fli 25.5 1.8E+02 0.0062 23.0 6.3 31 62-92 20-50 (103)
91 3tnu_B Keratin, type II cytosk 24.9 2.5E+02 0.0087 22.0 8.1 45 59-103 30-74 (129)
92 3s4r_A Vimentin; alpha-helix, 24.8 1.6E+02 0.0053 22.4 5.8 51 56-106 21-76 (93)
93 2aze_B Transcription factor E2 24.8 1.4E+02 0.0048 23.3 5.6 31 67-97 8-38 (106)
94 3kqg_A Langerin, C-type lectin 24.4 1.2E+02 0.0042 24.0 5.4 15 56-70 4-18 (182)
95 2xdj_A Uncharacterized protein 24.2 2.3E+02 0.0078 21.3 7.8 34 63-96 25-58 (83)
96 2p4v_A Transcription elongatio 24.1 2.4E+02 0.008 23.2 7.2 23 56-78 14-37 (158)
97 1lwu_C Fibrinogen gamma chain; 24.0 2.1E+02 0.0073 26.5 7.6 41 56-96 10-50 (323)
98 2xu6_A MDV1 coiled coil; prote 23.3 1.2E+02 0.004 22.7 4.6 38 57-94 27-64 (72)
99 3tnu_A Keratin, type I cytoske 23.2 2.5E+02 0.0087 22.1 7.0 25 55-79 49-73 (131)
100 3cvf_A Homer-3, homer protein 23.0 1.8E+02 0.0062 21.9 5.7 24 84-107 25-48 (79)
101 3a7p_A Autophagy protein 16; c 22.9 3.4E+02 0.012 22.8 8.2 25 76-100 100-124 (152)
102 1uix_A RHO-associated kinase; 22.8 2.4E+02 0.0081 20.9 9.3 11 104-114 57-67 (71)
103 3t97_C Nuclear pore glycoprote 22.7 49 0.0017 24.0 2.3 36 67-109 14-49 (64)
104 2wvr_A Geminin; DNA replicatio 22.3 2.8E+02 0.0097 24.5 7.5 20 73-92 116-135 (209)
105 1t6f_A Geminin; coiled-coil, c 22.2 1.6E+02 0.0056 19.3 4.5 26 57-82 6-31 (37)
106 2cly_A ATP synthase B chain, m 21.9 4E+02 0.014 23.3 8.7 51 60-114 124-182 (214)
107 2wuj_A Septum site-determining 21.8 87 0.003 21.8 3.5 28 56-83 25-52 (57)
108 1grj_A GREA protein; transcrip 21.6 2.8E+02 0.0097 22.6 7.2 20 56-75 14-34 (158)
109 1jcd_A Major outer membrane li 21.6 2.1E+02 0.0072 19.9 6.5 41 56-96 9-49 (52)
110 3efg_A Protein SLYX homolog; x 21.3 1.7E+02 0.006 21.6 5.2 9 102-110 40-48 (78)
111 1zym_A Enzyme I; phosphotransf 21.1 2.8E+02 0.0097 24.5 7.6 54 73-126 39-93 (258)
112 1lrz_A FEMA, factor essential 20.8 3.2E+02 0.011 25.3 8.2 48 56-103 245-298 (426)
113 3r4h_A Coiled coil helix CC-TE 20.7 1.5E+02 0.0053 18.7 4.0 15 60-74 4-18 (34)
114 2gkw_A TNF receptor-associated 20.5 1.6E+02 0.0054 24.4 5.5 32 69-100 4-35 (192)
115 3u1c_A Tropomyosin alpha-1 cha 20.5 2.9E+02 0.0099 21.1 7.2 40 70-109 28-67 (101)
116 2ve7_A Kinetochore protein HEC 20.3 1.5E+02 0.0051 27.1 5.7 25 73-97 186-210 (315)
117 1ses_A Seryl-tRNA synthetase; 20.2 1.8E+02 0.006 27.7 6.3 66 54-119 38-105 (421)
No 1
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=81.77 E-value=4.4 Score=31.07 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=16.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQ 81 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq 81 (279)
+.-|++.||.++..|..|...+|...
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~ 50 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQR 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34477777777777777666644433
No 2
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=77.68 E-value=6.2 Score=35.30 Aligned_cols=80 Identities=15% Similarity=0.268 Sum_probs=39.7
Q ss_pred eeeccCCccCChhhhHhhhhhccCCCcccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 12 WEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAM 91 (279)
Q Consensus 12 WEFaNe~F~RGq~hLLknIkRRk~~s~~~~~~~~~~~~e~g~~~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m 91 (279)
|==+||+|.-..++||..|+=--+. + ++ + +.....+.+||++....+.+|..|
T Consensus 39 yL~~~PdFf~~~~~Ll~~L~lph~~-------~-~a-V------------------SL~erQ~~~LR~r~~~Le~~L~~L 91 (252)
T 3e98_A 39 YLSQHPEFFVEHDELIPELRIPHQP-------G-DA-V------------------SLVERQVRLLRERNIEMRHRLSQL 91 (252)
T ss_dssp -------------------------------------C------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHhhCHHHHHhCCCCCCC-------C-Cc-c------------------cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4458999999999999988642111 1 11 1 122233567777777888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCch
Q 023639 92 EDRLLSTEKKQQQMMTFLAKALKNPSF 118 (279)
Q Consensus 92 ~~Rl~~~E~kQqQm~sFLakal~nP~F 118 (279)
-+..+..+....++..+..+++.-.+|
T Consensus 92 i~~A~~Ne~l~~~~~~l~l~LL~a~sl 118 (252)
T 3e98_A 92 MDVARENDRLFDKTRRLVLDLLDATSL 118 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 999999999999999999888887666
No 3
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=76.67 E-value=5 Score=28.19 Aligned_cols=31 Identities=13% Similarity=0.225 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRLRQHQQQSRDQL 88 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql 88 (279)
.+++.|+.++..|..++..|+++...+..+|
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777788887777777777777666555444
No 4
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=71.57 E-value=8 Score=27.58 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=24.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRD 86 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ 86 (279)
.|..+++.|..++..|..||..|+.+....+.
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888888888888888777655443
No 5
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=69.82 E-value=8.9 Score=26.87 Aligned_cols=30 Identities=10% Similarity=0.294 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 66 DRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 95 (279)
Q Consensus 66 d~~~L~~El~~LRqqq~~~~~ql~~m~~Rl 95 (279)
|..+|..|+..||++......+++.+..||
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555544444444444444443
No 6
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=69.66 E-value=32 Score=27.43 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=36.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 97 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~ 97 (279)
....||..|++-...|..||..++.+....+..|..+++|-..
T Consensus 33 ~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~ 75 (129)
T 3tnu_B 33 NTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGEL 75 (129)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999999999999888888888888887654
No 7
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=68.60 E-value=8.9 Score=27.02 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=25.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQ 87 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~q 87 (279)
.|+.+++.|..++..|..+|..|+.+....+..
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888776654443
No 8
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=68.19 E-value=11 Score=29.31 Aligned_cols=71 Identities=17% Similarity=0.254 Sum_probs=44.2
Q ss_pred CccCChhhhHhhhhhccCCCcccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 18 GFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 97 (279)
Q Consensus 18 ~F~RGq~hLLknIkRRk~~s~~~~~~~~~~~~e~g~~~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~ 97 (279)
+|-+.+--+|+.|+|+-..-. .+..| +.--..+...|..++..|+.|+..|+++...+...+.++.++++.
T Consensus 17 gls~eev~~lKq~RRtlKNRg-----yAq~C----R~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRG-----YAQSC----RYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHH-----HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhhhhhH-----HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666778999998732210 00111 111224556677777777888888887777777777777777654
No 9
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=67.15 E-value=23 Score=25.03 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 96 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~ 96 (279)
+-..++.||+++..|.+|+..--.+....++.--.|++-+.
T Consensus 8 L~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk 48 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLK 48 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHH
Confidence 45677888888888888887776666666666566655443
No 10
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=67.09 E-value=8.7 Score=25.03 Aligned_cols=29 Identities=17% Similarity=0.353 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 63 LKRDRNVLMAEIVRLRQHQQQSRDQLSAM 91 (279)
Q Consensus 63 Lkrd~~~L~~El~~LRqqq~~~~~ql~~m 91 (279)
+++.+.+..++|-.||.|....+.|+..|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 56777778888888877776666665544
No 11
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=65.53 E-value=31 Score=27.63 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=31.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 97 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~ 97 (279)
...||..|++-...|..||..++.+....+..|..+++|...
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~ 77 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCM 77 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 557888899999999999999988888888888888887654
No 12
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=65.29 E-value=11 Score=24.72 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQS 84 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~ 84 (279)
|++.++.|...+..|..|+.|||.-.-.+
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ll~~~ 34 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKKKNAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhccc
Confidence 67899999999999999999999765443
No 13
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=64.59 E-value=48 Score=26.59 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 67 RNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLA 110 (279)
Q Consensus 67 ~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLa 110 (279)
.+.|..||..||.....+..+|..+++.-...|+.-.-..+-|.
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLe 80 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLE 80 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHH
Confidence 56688899999999999999999999999998887776666555
No 14
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=64.24 E-value=7.9 Score=24.52 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRLR 78 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LR 78 (279)
.||..||++..+|.-||..|+
T Consensus 9 qeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 9 QEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 15
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=63.79 E-value=7.9 Score=25.05 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=22.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQ 79 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRq 79 (279)
|++.++.|-.++..|..||.+||.
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 788999999999999999999985
No 16
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=63.72 E-value=18 Score=29.24 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=31.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 99 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E 99 (279)
-+..|+.|+++...|..|+.+++.+.+. .+..|+.||..+|
T Consensus 13 rD~~Ie~Lkreie~lk~ele~l~~E~q~---~v~ql~~~i~~Le 53 (120)
T 3i00_A 13 KDHLIERLYREISGLKAQLENMKTESQR---VVLQLKGHVSELE 53 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 4567999999999999999999887765 4455555665554
No 17
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=61.86 E-value=29 Score=28.54 Aligned_cols=33 Identities=15% Similarity=0.068 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 59 ELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAM 91 (279)
Q Consensus 59 Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m 91 (279)
+++.|..+...+..|+..|+++...++.++..+
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~ 108 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESS 108 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444433333333333
No 18
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=59.24 E-value=21 Score=22.52 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRLR 78 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LR 78 (279)
+||..||.+..+|..||..|+
T Consensus 2 geiaalkqeiaalkkeiaalk 22 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALK 22 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 466667777777777766554
No 19
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=59.20 E-value=53 Score=25.30 Aligned_cols=46 Identities=15% Similarity=0.292 Sum_probs=40.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 100 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~ 100 (279)
.+..++..|+.+-..|..||..|-.+......+|.+++.-......
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 5788999999999999999999999999999999988887776654
No 20
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=57.81 E-value=27 Score=26.68 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 023639 70 LMAEIVRLRQHQQ 82 (279)
Q Consensus 70 L~~El~~LRqqq~ 82 (279)
|..||..||++..
T Consensus 25 LqmEieELKekN~ 37 (81)
T 2jee_A 25 LQMEIEELKEKNN 37 (81)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 21
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=56.81 E-value=7.8 Score=27.46 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=23.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSR 85 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~ 85 (279)
.|+.+++.|..++..|..+|..|+.+....+
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888888888887765443
No 22
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=55.59 E-value=19 Score=25.75 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=21.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQS 84 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~ 84 (279)
.+..+++.|+.++..|..+|..|+.+....
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777665443
No 23
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=55.49 E-value=21 Score=23.41 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=24.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQS 84 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~ 84 (279)
|+++++.|-.++..|..|+.|||.-.-.+
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~~~ 34 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhccc
Confidence 78899999999999999999998765443
No 24
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=55.14 E-value=33 Score=26.29 Aligned_cols=41 Identities=27% Similarity=0.270 Sum_probs=30.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 54 YGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLST 98 (279)
Q Consensus 54 ~~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~ 98 (279)
++|+.||.. +..+..||.+.|--+.++..+|+.-+.|.+.+
T Consensus 17 SALeaEIqA----KQ~i~EELs~vr~~ni~~eskL~eae~rn~eL 57 (81)
T 1wt6_A 17 EALEEEVLT----RQSLSREMEAIRTDNQNFASQLREAEARNRDL 57 (81)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677743 78888888888888888888887777776654
No 25
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=54.89 E-value=8.7 Score=27.66 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=22.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQ 81 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq 81 (279)
.|+.+++.|+.++..|..||..||++.
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888999999999999999888764
No 26
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=54.33 E-value=42 Score=29.37 Aligned_cols=58 Identities=12% Similarity=0.190 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Q 023639 67 RNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQ 124 (279)
Q Consensus 67 ~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLakal~nP~Fl~~L~~ 124 (279)
.+.|..|+..|+++...-..++.++.++|++.+..-...-.-+++...+-.++.-|..
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e 79 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYE 79 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHH
Confidence 3445555555555555556666666666666665544555555666666666666665
No 27
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=54.25 E-value=68 Score=26.25 Aligned_cols=44 Identities=14% Similarity=0.128 Sum_probs=22.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 99 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E 99 (279)
+..|+-.++++...|..++..+..+....++++.....++...+
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~ 109 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSA 109 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555554444444433
No 28
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=53.96 E-value=35 Score=23.49 Aligned_cols=38 Identities=26% Similarity=0.397 Sum_probs=20.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMED 93 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~ 93 (279)
+...|.+||+|+-.|...-+.|..-.-+.+..+..++.
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 44567777777766665554444444444444444433
No 29
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=52.17 E-value=56 Score=30.99 Aligned_cols=49 Identities=14% Similarity=0.296 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 59 ELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMT 107 (279)
Q Consensus 59 Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~s 107 (279)
+++.|+.+...|..++..|.+....++..+..+.+++...|..-+++.+
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n 52 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHN 52 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555566666667777777766655444433
No 30
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=51.02 E-value=70 Score=28.04 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 57 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKK 101 (279)
Q Consensus 57 ~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~k 101 (279)
..++..++.....+..++..++.+....+..+..+..|+...+.+
T Consensus 38 e~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~ 82 (256)
T 3na7_A 38 LNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKK 82 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444455554444433
No 31
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=50.42 E-value=18 Score=23.33 Aligned_cols=24 Identities=8% Similarity=0.285 Sum_probs=21.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQ 79 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRq 79 (279)
+++.++.|=.++..|..|+.+||.
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 678899999999999999999885
No 32
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=49.94 E-value=19 Score=23.42 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQ 79 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRq 79 (279)
+++.++.|=.++..|..|+.+||.
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHH
Confidence 678899999999999999999885
No 33
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=49.20 E-value=3 Score=32.70 Aligned_cols=10 Identities=40% Similarity=0.657 Sum_probs=8.2
Q ss_pred CCcccccCCC
Q 023639 1 MQGFRKVDPD 10 (279)
Q Consensus 1 tYGFRKVdpd 10 (279)
+||||||...
T Consensus 64 ~YGF~Kv~~~ 73 (106)
T 1hks_A 64 MYGFHKITSI 73 (106)
T ss_dssp HHCCCCSSCS
T ss_pred cCCCeEEecc
Confidence 6999999753
No 34
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=48.55 E-value=20 Score=23.11 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=21.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQ 79 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRq 79 (279)
|++.++.|-..+..|..||.+||.
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 678899999999999999999875
No 35
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=48.08 E-value=21 Score=23.24 Aligned_cols=24 Identities=13% Similarity=0.286 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQ 79 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRq 79 (279)
+++.++.|=..+..|..||.|||.
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 678899999999999999999885
No 36
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=46.47 E-value=1e+02 Score=24.95 Aligned_cols=33 Identities=15% Similarity=0.076 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSA 90 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~ 90 (279)
.+++.+......|..++..++.........+..
T Consensus 13 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~ 45 (284)
T 1c1g_A 13 LDKENALDRADEAEADKKAAEDRSKQLEDELVS 45 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444443333333333333333333
No 37
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=46.20 E-value=21 Score=23.17 Aligned_cols=24 Identities=25% Similarity=0.413 Sum_probs=21.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQ 79 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRq 79 (279)
|++.++.|=.+++.|..|+.+||.
T Consensus 6 LE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 678899999999999999999875
No 38
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=46.03 E-value=27 Score=26.79 Aligned_cols=27 Identities=11% Similarity=0.187 Sum_probs=14.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQ 82 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~ 82 (279)
+..+++.|..+|..|..+|..|+.+..
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554443
No 39
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=45.76 E-value=25 Score=26.66 Aligned_cols=40 Identities=18% Similarity=0.366 Sum_probs=23.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDR 94 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~R 94 (279)
.|...++.|.-++.+|..|+..+++-...++.++..|++-
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeE 73 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEE 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777888888888877776655544444444443
No 40
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=45.30 E-value=24 Score=22.91 Aligned_cols=24 Identities=17% Similarity=0.470 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQ 79 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRq 79 (279)
+++.++.|=..+..|..|+.+||.
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHH
Confidence 678899999999999999999885
No 41
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=45.05 E-value=24 Score=22.87 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQ 79 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRq 79 (279)
|++.++.|-..+..|..|+.+||.
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 678899999999999999999985
No 42
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=44.74 E-value=4.1 Score=33.00 Aligned_cols=9 Identities=67% Similarity=0.870 Sum_probs=7.8
Q ss_pred CCcccccCC
Q 023639 1 MQGFRKVDP 9 (279)
Q Consensus 1 tYGFRKVdp 9 (279)
+||||||..
T Consensus 77 ~YGF~Kv~~ 85 (125)
T 2ldu_A 77 MYGFRKVVH 85 (125)
T ss_dssp HTTCEEEEC
T ss_pred ccCceEEee
Confidence 699999975
No 43
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=43.38 E-value=1.3e+02 Score=27.31 Aligned_cols=66 Identities=12% Similarity=0.184 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHh
Q 023639 60 LERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQS 125 (279)
Q Consensus 60 le~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLakal~nP~Fl~~L~~~ 125 (279)
+..|++.++.+..++--|-=+...+...|..+.-+|..+..+++.++.-||++=++-.||..-+..
T Consensus 151 l~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~ 216 (242)
T 3uux_B 151 PSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQ 216 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 356889999999988888888888999999999999999999999999999999998898765543
No 44
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=43.32 E-value=64 Score=24.39 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 70 LMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLA 110 (279)
Q Consensus 70 L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLa 110 (279)
|..-|..|+++....+.++..+...|..+.++|+.+..=|.
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444555555555556666665554443
No 45
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=42.98 E-value=27 Score=25.68 Aligned_cols=32 Identities=13% Similarity=0.248 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLS 89 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~ 89 (279)
.-|..|+.....|..|+..|+++....+.+|.
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666555444443
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=42.24 E-value=60 Score=30.99 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=25.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 100 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~ 100 (279)
+..++..++.+.+.+..++.+++++.+..+.+++.+++.+..+|+
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 551 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEK 551 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHH
Confidence 555566666666666666666665555555555544444444443
No 47
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=40.35 E-value=52 Score=24.80 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAM 91 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m 91 (279)
+-|..|+.....|..++..|+++++..+.+|+.|
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777777777777777777776666655544
No 48
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=39.73 E-value=92 Score=27.26 Aligned_cols=14 Identities=21% Similarity=0.657 Sum_probs=7.2
Q ss_pred CCCchHHHHHHHhh
Q 023639 218 FSSVNETIWEDFMA 231 (279)
Q Consensus 218 ~~~~~~~~weeLl~ 231 (279)
.-.+.....-++..
T Consensus 205 ~~~lppq~~~~i~~ 218 (256)
T 3na7_A 205 FIRLNDKIYTEVLT 218 (256)
T ss_dssp CCBCCHHHHHHHHH
T ss_pred CeeeCHHHHHHHHC
Confidence 33445555566554
No 49
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=39.08 E-value=1.2e+02 Score=29.00 Aligned_cols=45 Identities=13% Similarity=0.248 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 63 LKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMT 107 (279)
Q Consensus 63 Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~s 107 (279)
|+.+...|...+..|.++.+.+...+..++++|...+..-+++.+
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n 52 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHN 52 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444455555555555554433334433
No 50
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=38.63 E-value=46 Score=27.18 Aligned_cols=9 Identities=33% Similarity=0.423 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 023639 71 MAEIVRLRQ 79 (279)
Q Consensus 71 ~~El~~LRq 79 (279)
.-||..|.|
T Consensus 77 qgEI~~Lnq 85 (121)
T 3mq7_A 77 EGEITTLNH 85 (121)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 51
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=36.95 E-value=1.4e+02 Score=29.25 Aligned_cols=89 Identities=13% Similarity=0.084 Sum_probs=54.1
Q ss_pred ccCChhhhH-hhhhhccCCCcccccCCCccc--cccccCCchHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
Q 023639 19 FLGGQKHLL-KTIKRRRHVSQSMQQRGGEAC--LEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQ-----------QQS 84 (279)
Q Consensus 19 F~RGq~hLL-knIkRRk~~s~~~~~~~~~~~--~e~g~~~l~~Ele~Lkrd~~~L~~El~~LRqqq-----------~~~ 84 (279)
|+|..++++ +++++|+-.... ...... .+..+..+..+++.|+.+++.+..+|.+++... ...
T Consensus 45 ~ir~n~~~v~~~l~~R~~~~~~---~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l 121 (501)
T 1wle_A 45 SLCAYPEDAARALDLRKGELRS---KDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSL 121 (501)
T ss_dssp HHHHSHHHHHHHHHHHTCSCCG---GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHH
T ss_pred HHHhCHHHHHHHHHHcCCCcch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHH
Confidence 455556665 777777532100 000000 111233567788889999999999998776432 355
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 85 RDQLSAMEDRLLSTEKKQQQMMTFLA 110 (279)
Q Consensus 85 ~~ql~~m~~Rl~~~E~kQqQm~sFLa 110 (279)
..++..+.++|..+|.....+-.-|.
T Consensus 122 ~~~~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 122 RARGREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888888888777766655443
No 52
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=36.87 E-value=2.1e+02 Score=24.80 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 67 RNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFL 109 (279)
Q Consensus 67 ~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFL 109 (279)
.+.|..||..||........+|..+++.-..+|+.-....+-|
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~Sl 132 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSL 132 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhH
Confidence 5566667777777777777777777777777776655544433
No 53
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=36.66 E-value=1.2e+02 Score=23.22 Aligned_cols=39 Identities=15% Similarity=0.324 Sum_probs=18.5
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 67 RNVLMAEIV---RLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 105 (279)
Q Consensus 67 ~~~L~~El~---~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm 105 (279)
.++|..||. -+..+...++.-..+++-+|+..|.+-+-+
T Consensus 16 QSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL 57 (81)
T 1wt6_A 16 QEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554 233334444444444555555555444444
No 54
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=36.46 E-value=1.3e+02 Score=22.59 Aligned_cols=45 Identities=20% Similarity=0.382 Sum_probs=34.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQ 102 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQ 102 (279)
.+++.+++|-.-...|..-+++|=-++.++. ..|++||..+|.+=
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ---~KLKqRit~LE~~~ 48 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQ---QKLKQRLTKVEKFL 48 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 4778888888888888888888887777665 34566888877643
No 55
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=35.56 E-value=2.1e+02 Score=24.77 Aligned_cols=52 Identities=23% Similarity=0.335 Sum_probs=22.0
Q ss_pred chHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVL-------MAEIVRLRQHQQQSRDQ----LSAMEDRLLSTEKKQQQMMT 107 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L-------~~El~~LRqqq~~~~~q----l~~m~~Rl~~~E~kQqQm~s 107 (279)
|+.+|+.+.+.+..| ..|+..+|.++..+..+ +..|+..|..+.....++..
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~ 109 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHK 109 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444 34444333333333333 44444444444444444444
No 56
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=35.50 E-value=90 Score=29.09 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 69 VLMAEIVRLRQHQQQSRDQLSAMEDRLLST 98 (279)
Q Consensus 69 ~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~ 98 (279)
.|..||.+|.........++..|+..|..+
T Consensus 9 ~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~ 38 (323)
T 1lwu_C 9 KILEEVRILEQIGVSHDAQIQELSEMWRVN 38 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence 333444444433333344444444444443
No 57
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=35.47 E-value=42 Score=21.75 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=21.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQ 79 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRq 79 (279)
+++.++.|-.++..|..|+.+|+.
T Consensus 6 ledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 678889999999999999998875
No 58
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=35.44 E-value=70 Score=25.21 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRLRQHQQQSRDQL 88 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql 88 (279)
+++..|+++...|..|-.+||++....+.+|
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888888776555444
No 59
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=34.70 E-value=94 Score=29.94 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=39.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 54 YGLDGELERLKRDRNVLMAEIVRLRQH---QQQSRDQLSAMEDRLLSTEKKQQQMMTFLA 110 (279)
Q Consensus 54 ~~l~~Ele~Lkrd~~~L~~El~~LRqq---q~~~~~ql~~m~~Rl~~~E~kQqQm~sFLa 110 (279)
-.+..+++.|+.+++.+..+|.+++.. -.....++..+.++|..+|.....+-.-|.
T Consensus 41 r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (455)
T 2dq0_A 41 RTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKID 100 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888889999999888876432 234456667777777777766666555444
No 60
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=34.57 E-value=1.3e+02 Score=21.94 Aligned_cols=7 Identities=29% Similarity=0.572 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 023639 90 AMEDRLL 96 (279)
Q Consensus 90 ~m~~Rl~ 96 (279)
.|..|++
T Consensus 45 ~L~kKiq 51 (81)
T 1ic2_A 45 ALQKKLK 51 (81)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 61
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=34.02 E-value=1.3e+02 Score=23.08 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=25.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLST 98 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~ 98 (279)
+..++..+......+-.||..|.++.+.++..+...+.+|..+
T Consensus 28 ~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 28 AEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556666666666666666666666666655543
No 62
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=33.92 E-value=2.1e+02 Score=24.07 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 57 DGELERLKRDRNVLMAEIVRLRQH 80 (279)
Q Consensus 57 ~~Ele~Lkrd~~~L~~El~~LRqq 80 (279)
...|..|+.+...|..+|..|...
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeee 90 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEV 90 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666666655533
No 63
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=33.16 E-value=56 Score=24.29 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRLRQHQQQSRDQL 88 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql 88 (279)
+-|..|+.+...|..|+..|+.++...+.+|
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777766555444
No 64
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=33.08 E-value=1.1e+02 Score=23.00 Aligned_cols=37 Identities=14% Similarity=0.292 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 59 ELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 95 (279)
Q Consensus 59 Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl 95 (279)
.+..++.....+..++..|+..+...+.++..++..+
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l 40 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAI 40 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666555555444444333
No 65
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=32.93 E-value=1.2e+02 Score=22.81 Aligned_cols=43 Identities=16% Similarity=0.291 Sum_probs=31.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 97 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~ 97 (279)
..++=+..|......|..+|.+|..+......++..++..|+.
T Consensus 67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677778888888888887777777777666666666554
No 66
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=32.06 E-value=2e+02 Score=23.06 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=34.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMT 107 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~s 107 (279)
+.++++++..++..|... +.++-..+..+++.+..+++..|+--+.|-.
T Consensus 18 l~~qL~k~~~~r~~Le~~---w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq 66 (112)
T 1x79_B 18 ANDQLEKTMKDKQELEDF---IKQSSEDSSHQISALVLRAQASEILLEELQQ 66 (112)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666655 4566667788999999999998865554443
No 67
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=31.80 E-value=46 Score=24.47 Aligned_cols=33 Identities=27% Similarity=0.293 Sum_probs=17.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQL 88 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql 88 (279)
|+.++..|...+..|..|...||.+...+...+
T Consensus 34 LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 34 LETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555566555555554444333
No 68
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=31.60 E-value=32 Score=25.84 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=14.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQ 81 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq 81 (279)
+...++.|..+|..|..+|..|+.+.
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~~L~~E~ 66 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVEQLSREL 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555444
No 69
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=31.05 E-value=1.3e+02 Score=23.02 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 57 DGELERLKRDRNVLMAEIVRLRQHQQ 82 (279)
Q Consensus 57 ~~Ele~Lkrd~~~L~~El~~LRqqq~ 82 (279)
-.|++.|......|..||..|++...
T Consensus 45 L~EN~~Lh~~ie~l~eEi~~lk~en~ 70 (83)
T 1uii_A 45 LKENEKLHKEIEQKDNEIARLKKENK 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777776666554
No 70
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=30.75 E-value=64 Score=24.97 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 57 DGELERLKRDRNVLMAEIVRLRQHQ 81 (279)
Q Consensus 57 ~~Ele~Lkrd~~~L~~El~~LRqqq 81 (279)
..+++.|++++..+..|+-.+++++
T Consensus 61 ~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 61 IQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 71
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=29.67 E-value=78 Score=19.69 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023639 77 LRQHQQQSRDQLSAMEDRLLSTE 99 (279)
Q Consensus 77 LRqqq~~~~~ql~~m~~Rl~~~E 99 (279)
|..+.-..++.|++++.+|..+|
T Consensus 6 lekkcaalesklqalekkleale 28 (31)
T 3ljm_A 6 LEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666677777666655
No 72
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=29.48 E-value=1.3e+02 Score=20.82 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=18.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSA 90 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~ 90 (279)
+..++..|..-|..|..-+.+.|++...++.+|..
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555565555555555554444443
No 73
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=29.27 E-value=2.1e+02 Score=22.66 Aligned_cols=43 Identities=9% Similarity=0.163 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 68 NVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLA 110 (279)
Q Consensus 68 ~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLa 110 (279)
.+|.+|+...+++......++..++..+..+|+.=.--.+.|.
T Consensus 7 ~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLR 49 (106)
T 4e61_A 7 VAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLR 49 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555566666777777777755444444343
No 74
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=29.16 E-value=2.7e+02 Score=24.43 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 97 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~ 97 (279)
.+++.|+.....|..++..++.++.-+...+.++..|...
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~r 98 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQ 98 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888888888888888888754
No 75
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=29.05 E-value=1.6e+02 Score=28.89 Aligned_cols=66 Identities=12% Similarity=0.053 Sum_probs=44.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCchH
Q 023639 54 YGLDGELERLKRDRNVLMAEIVRLRQH---QQQSRDQLSAMEDRLLSTEKKQQQMMTFLA-KALKNPSFF 119 (279)
Q Consensus 54 ~~l~~Ele~Lkrd~~~L~~El~~LRqq---q~~~~~ql~~m~~Rl~~~E~kQqQm~sFLa-kal~nP~Fl 119 (279)
..+..+++.|+.+++.+..+|..++.. -.....++..+.++|..+|....++-.-|. .++.=|+++
T Consensus 43 r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~ 112 (485)
T 3qne_A 43 VKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIV 112 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 356778888999999999998876542 234556677777888877777666655443 333334443
No 76
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=28.81 E-value=2.4e+02 Score=23.65 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 59 ELERLKRDRNVLMAEIVRLRQHQQQSRDQLSA 90 (279)
Q Consensus 59 Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~ 90 (279)
.+++|++-+.+-..||.+||-+...+...+..
T Consensus 47 KVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K 78 (167)
T 4gkw_A 47 KVDQLQKRNVAHQKEIGKLRAELGTAQRNLEK 78 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhccHHHHHHHHHHHHHHHHHHhHHH
Confidence 44555555555555555555554444433333
No 77
>1ji8_A Dissimilatory siroheme-sulfite reductase; orthogonal helical bundle, structural genomics, PSI, protein structure initiative; NMR {Pyrobaculum aerophilum} SCOP: d.203.1.1
Probab=28.74 E-value=30 Score=27.79 Aligned_cols=38 Identities=26% Similarity=0.478 Sum_probs=28.0
Q ss_pred CccccccCcccceeeccccccCCCCchhh-hHHHH-hhhcC
Q 023639 239 PEEVVVKDQSEAEVELEDLVATPTDWGEE-LQDLV-DQMGY 277 (279)
Q Consensus 239 ~ee~~~~~~~~~~~e~Edlv~~p~~W~~~-~~~lv-~~~~~ 277 (279)
|.++.+ +..+|.+|-+.+...|.+|+++ ...|+ ++-|.
T Consensus 6 ~~~m~~-~g~~ie~D~~GfL~~~~dW~eevA~~lA~~~egI 45 (111)
T 1ji8_A 6 PGEYQV-DGKKVILDEDCFMQNPEDWDEKVAEWLARELEGI 45 (111)
T ss_dssp SEEEEC-SSCEEEEEGGGEECCGGGCCHHHHHHHHHHHTCC
T ss_pred CcceeE-CCEEEeeCCCCCcCChHhCCHHHHHHHHHhcCCc
Confidence 444543 4667889999999999999977 66777 65553
No 78
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=28.73 E-value=37 Score=23.62 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=16.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQ 79 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRq 79 (279)
.|+.++..|..++..|..++..|++
T Consensus 26 ~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 26 SLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666654
No 79
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=27.94 E-value=1.3e+02 Score=23.07 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRLRQHQQ 82 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LRqqq~ 82 (279)
.|++.|......+..||..|++...
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~ 62 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENK 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666676667777777766666543
No 80
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=27.58 E-value=73 Score=21.83 Aligned_cols=23 Identities=17% Similarity=0.489 Sum_probs=14.8
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHH
Q 023639 58 GELERLKRD-RNVLMAEIVRLRQH 80 (279)
Q Consensus 58 ~Ele~Lkrd-~~~L~~El~~LRqq 80 (279)
.+++++|.| ...+..||++++++
T Consensus 7 ~dle~~KqEIL~E~RkElqK~K~E 30 (45)
T 1use_A 7 SDLQRVKQELLEEVKKELQKVKEE 30 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778777 45566666666654
No 81
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=27.51 E-value=47 Score=20.26 Aligned_cols=18 Identities=39% Similarity=0.530 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023639 60 LERLKRDRNVLMAEIVRL 77 (279)
Q Consensus 60 le~Lkrd~~~L~~El~~L 77 (279)
|.+||..+..|.+||..|
T Consensus 2 irrlkqknarlkqeiaal 19 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAAL 19 (28)
T ss_dssp -CHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHH
Confidence 345666666666666544
No 82
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=27.49 E-value=1.9e+02 Score=24.46 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIV 75 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~ 75 (279)
.|+++|+.++..+...|.
T Consensus 5 qe~~~Le~Ek~~~~~rI~ 22 (155)
T 2aze_A 5 QECQNLEVERQRRLERIK 22 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466777777776665554
No 83
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=27.46 E-value=1.5e+02 Score=20.23 Aligned_cols=43 Identities=23% Similarity=0.346 Sum_probs=30.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKK 101 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~k 101 (279)
+++.+++|-.-...|..-+++|=-++.++.. .|++||..+|.+
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~---KlKqRit~lE~~ 45 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQM---KMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhc
Confidence 5677777777788888888887777766653 456688777753
No 84
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=26.97 E-value=1.2e+02 Score=22.50 Aligned_cols=43 Identities=14% Similarity=0.188 Sum_probs=33.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 97 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~ 97 (279)
..++-+..|......|..+|.+|..+....+.++..++..|+.
T Consensus 62 ~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 62 AKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677788888888888888888888777777777766653
No 85
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=26.78 E-value=69 Score=19.52 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023639 61 ERLKRDRNVLMAEIVRLRQHQ 81 (279)
Q Consensus 61 e~Lkrd~~~L~~El~~LRqqq 81 (279)
+.|.-++.+|.+.|..|+|+.
T Consensus 3 dalefendaleqkiaalkqki 23 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKI 23 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHH
Confidence 345555666666666665544
No 86
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=26.67 E-value=1.9e+02 Score=27.35 Aligned_cols=38 Identities=11% Similarity=0.120 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 66 DRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQ 103 (279)
Q Consensus 66 d~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQq 103 (279)
+...|..||..|+++....+..+..++.+++.+..+-.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 41 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILI 41 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777777777776654443
No 87
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=26.52 E-value=3.6e+02 Score=28.84 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 73 EIVRLRQHQQQSRDQLSAMEDRLLST 98 (279)
Q Consensus 73 El~~LRqqq~~~~~ql~~m~~Rl~~~ 98 (279)
|+..++++.+.+..+...++++++.+
T Consensus 992 e~~~l~~~~~~~~ke~~~lee~~~~~ 1017 (1080)
T 2dfs_A 992 EIAKLRKELHQTQTEKKTIEEWADKY 1017 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444333
No 88
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=26.08 E-value=48 Score=24.88 Aligned_cols=22 Identities=5% Similarity=0.286 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023639 71 MAEIVRLRQHQQQSRDQLSAME 92 (279)
Q Consensus 71 ~~El~~LRqqq~~~~~ql~~m~ 92 (279)
...+..|.++....+.++..|+
T Consensus 42 ~~r~~~L~~eN~~L~~~v~~L~ 63 (78)
T 1gu4_A 42 QHKVLELTAENERLQKKVEQLS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 89
>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens}
Probab=25.87 E-value=1.1e+02 Score=21.20 Aligned_cols=29 Identities=14% Similarity=0.305 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 83 QSRDQLSAMEDRLLSTEKKQQQMMTFLAK 111 (279)
Q Consensus 83 ~~~~ql~~m~~Rl~~~E~kQqQm~sFLak 111 (279)
++-..+.-+|+.+..|++|-.+++.++-.
T Consensus 14 S~~~Rl~rVE~qV~~md~KLd~l~~~~~~ 42 (49)
T 3bj4_A 14 TIGARLNRVEDKVTQLDQRLALITDMLHQ 42 (49)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777888888887777765553
No 90
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=25.46 E-value=1.8e+02 Score=23.02 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 62 RLKRDRNVLMAEIVRLRQHQQQSRDQLSAME 92 (279)
Q Consensus 62 ~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~ 92 (279)
+|-.|+++|.-+|--|+-.....+..+..+.
T Consensus 20 QLDNEKsal~YqVdlLKD~LEe~eE~~aql~ 50 (103)
T 4h22_A 20 QLDNEKTNFMYQVDTLKDMLLELEEQLAESR 50 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544444444444333
No 91
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.88 E-value=2.5e+02 Score=22.04 Aligned_cols=45 Identities=18% Similarity=0.331 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 59 ELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQ 103 (279)
Q Consensus 59 Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQq 103 (279)
.+...|.+...|..-|..|+-+.++.+.+-..++..|..+|.+-.
T Consensus 30 ~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~ 74 (129)
T 3tnu_B 30 DLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGE 74 (129)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555666666555543
No 92
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=24.83 E-value=1.6e+02 Score=22.44 Aligned_cols=51 Identities=12% Similarity=0.298 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQ-----SRDQLSAMEDRLLSTEKKQQQMM 106 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~-----~~~ql~~m~~Rl~~~E~kQqQm~ 106 (279)
..+.+..|-..|..|..++..++++... .+.+|..+...|..+...-.++.
T Consensus 21 yIdKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~ 76 (93)
T 3s4r_A 21 LIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVE 76 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777888888888888777765432 24566666666666544433333
No 93
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=24.80 E-value=1.4e+02 Score=23.31 Aligned_cols=31 Identities=16% Similarity=0.187 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 67 RNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 97 (279)
Q Consensus 67 ~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~ 97 (279)
...|..||..|.++-+....++..+.+.|+.
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~ 38 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRL 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556665555555555555555555444
No 94
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=24.37 E-value=1.2e+02 Score=24.03 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=3.3
Q ss_pred chHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVL 70 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L 70 (279)
|..+++.||+|...+
T Consensus 4 l~~~~~~l~~~~~~~ 18 (182)
T 3kqg_A 4 LNAQIPELKSDLEKA 18 (182)
T ss_dssp ---------CHHHHH
T ss_pred hhhhHHHHHHHHHHH
Confidence 456666666666543
No 95
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=24.16 E-value=2.3e+02 Score=21.27 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 63 LKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 96 (279)
Q Consensus 63 Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~ 96 (279)
|......|..||.+||-+.+....+|..|.+|-.
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555443
No 96
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=24.15 E-value=2.4e+02 Score=23.17 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=10.4
Q ss_pred chHHHHHHHH-HHHHHHHHHHHHH
Q 023639 56 LDGELERLKR-DRNVLMAEIVRLR 78 (279)
Q Consensus 56 l~~Ele~Lkr-d~~~L~~El~~LR 78 (279)
|..|++.|++ ++..+..+|...|
T Consensus 14 L~~EL~~L~~~~R~~i~~~i~~Ar 37 (158)
T 2p4v_A 14 LKQELNYLWREERPEVTKKVTWAA 37 (158)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchHHHHHHHHHHH
Confidence 4455555533 3444444444333
No 97
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=24.00 E-value=2.1e+02 Score=26.53 Aligned_cols=41 Identities=15% Similarity=0.163 Sum_probs=20.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 96 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~ 96 (279)
|.+|+.+|.........+|..|+.+....+.+|+.+++.|.
T Consensus 10 ~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~ 50 (323)
T 1lwu_C 10 ILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLV 50 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556555544444455555555555544444444444443
No 98
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=23.27 E-value=1.2e+02 Score=22.69 Aligned_cols=38 Identities=29% Similarity=0.541 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 57 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDR 94 (279)
Q Consensus 57 ~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~R 94 (279)
+.++++|+.=+..+..-|+.+-|..-..++.|..++.|
T Consensus 27 D~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~r 64 (72)
T 2xu6_A 27 EVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDR 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33344444444444444444444433333333333333
No 99
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.18 E-value=2.5e+02 Score=22.14 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=12.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQ 79 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRq 79 (279)
.|..|++.++.-+..|..-|..+.+
T Consensus 49 ~L~~el~~l~~~~~sLE~~l~e~e~ 73 (131)
T 3tnu_A 49 NLEIELQSQLSMKASLENSLEETKG 73 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3445555555555555554444443
No 100
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=23.00 E-value=1.8e+02 Score=21.89 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 84 SRDQLSAMEDRLLSTEKKQQQMMT 107 (279)
Q Consensus 84 ~~~ql~~m~~Rl~~~E~kQqQm~s 107 (279)
.+.++..++++|.....+|.++-.
T Consensus 25 Le~~v~~le~~Le~s~~~q~~~~~ 48 (79)
T 3cvf_A 25 LEHQLRAMERSLEEARAERERARA 48 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555554444444433
No 101
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=22.89 E-value=3.4e+02 Score=22.81 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 76 RLRQHQQQSRDQLSAMEDRLLSTEK 100 (279)
Q Consensus 76 ~LRqqq~~~~~ql~~m~~Rl~~~E~ 100 (279)
.++.+..+...++..++++++.++.
T Consensus 100 ~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 100 RLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 102
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=22.77 E-value=2.4e+02 Score=20.93 Aligned_cols=11 Identities=27% Similarity=0.341 Sum_probs=5.3
Q ss_pred HHHHHHHHHhc
Q 023639 104 QMMTFLAKALK 114 (279)
Q Consensus 104 Qm~sFLakal~ 114 (279)
|-++-||-+|.
T Consensus 57 QAVNKLAEIMN 67 (71)
T 1uix_A 57 QAVNKLAEIMN 67 (71)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44555554443
No 103
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=22.75 E-value=49 Score=24.02 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 67 RNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFL 109 (279)
Q Consensus 67 ~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFL 109 (279)
...|..++.+..+.|.. +++.|...+..|..+=++|
T Consensus 14 I~~L~~~v~~~e~~Q~~-------ldq~Ld~Ie~QQ~ELe~~L 49 (64)
T 3t97_C 14 ITSLHREVEKVKLDQKR-------LDQELDFILSQQKELEDLL 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 34555555555555533 3333444444444444433
No 104
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=22.26 E-value=2.8e+02 Score=24.48 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023639 73 EIVRLRQHQQQSRDQLSAME 92 (279)
Q Consensus 73 El~~LRqqq~~~~~ql~~m~ 92 (279)
|-.+|.++....+..+..|+
T Consensus 116 EN~~Lh~~ie~l~eEi~~Lk 135 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLK 135 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344433333333333333
No 105
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=22.15 E-value=1.6e+02 Score=19.27 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 57 DGELERLKRDRNVLMAEIVRLRQHQQ 82 (279)
Q Consensus 57 ~~Ele~Lkrd~~~L~~El~~LRqqq~ 82 (279)
-.|.++|-++...=..||.+||++..
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~ 31 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENK 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 35778888888888888888887754
No 106
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=21.86 E-value=4e+02 Score=23.29 Aligned_cols=51 Identities=18% Similarity=0.311 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH--HHHHHHHHHHHHHHhc
Q 023639 60 LERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL------ST--EKKQQQMMTFLAKALK 114 (279)
Q Consensus 60 le~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~------~~--E~kQqQm~sFLakal~ 114 (279)
+=..++++.+|..|..-++|++... ..++.||. ++ +..|++|++.+..-+.
T Consensus 124 Lf~~~kEn~al~lEa~yre~~~~v~----~EvK~rLDy~v~~e~~~r~~eQ~~mv~wV~~~V~ 182 (214)
T 2cly_A 124 LFDVQRNNIAMALEVTYRERLHRVY----REVKNRLDYHISVQNMMRQKEQEHMINWVEKRVV 182 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345789999999988777666443 23333433 22 2345678887764333
No 107
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=21.77 E-value=87 Score=21.75 Aligned_cols=28 Identities=11% Similarity=0.336 Sum_probs=16.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQ 83 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~ 83 (279)
.+.=++.+..+...|..|+..|+.+...
T Consensus 25 VD~FLd~v~~~~~~l~~e~~~L~~~~~~ 52 (57)
T 2wuj_A 25 VNEFLAQVRKDYEIVLRKKTELEAKVNE 52 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666655443
No 108
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=21.63 E-value=2.8e+02 Score=22.58 Aligned_cols=20 Identities=40% Similarity=0.507 Sum_probs=8.5
Q ss_pred chHHHHHHHH-HHHHHHHHHH
Q 023639 56 LDGELERLKR-DRNVLMAEIV 75 (279)
Q Consensus 56 l~~Ele~Lkr-d~~~L~~El~ 75 (279)
|..|++.|+. ++..+...+.
T Consensus 14 L~~El~~L~~~~rp~i~~~i~ 34 (158)
T 1grj_A 14 LREELDFLKSVRRPEIIAAIA 34 (158)
T ss_dssp HHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHhccchhhHhhHH
Confidence 4444444444 3333433443
No 109
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=21.58 E-value=2.1e+02 Score=19.88 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 96 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~~Rl~ 96 (279)
|..++..|......|..++..||...+..+..-..-.+||.
T Consensus 9 Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 9 ASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44556666666666666666666666666655555566654
No 110
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=21.27 E-value=1.7e+02 Score=21.60 Aligned_cols=9 Identities=11% Similarity=-0.278 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 023639 102 QQQMMTFLA 110 (279)
Q Consensus 102 QqQm~sFLa 110 (279)
|++.+.-|.
T Consensus 40 Qq~~Id~L~ 48 (78)
T 3efg_A 40 ARLTGARNA 48 (78)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 111
>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP: a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A 2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A
Probab=21.05 E-value=2.8e+02 Score=24.48 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCchHHHHHHhH
Q 023639 73 EIVRLRQHQQQSRDQLSAMEDRLLS-TEKKQQQMMTFLAKALKNPSFFQQLAQSN 126 (279)
Q Consensus 73 El~~LRqqq~~~~~ql~~m~~Rl~~-~E~kQqQm~sFLakal~nP~Fl~~L~~~~ 126 (279)
|+.+|++=...+..+|..|.+++.. .......++..-..++.+|.|+.......
T Consensus 39 E~~rl~~Al~~~~~eL~~l~~~~~~~~g~e~a~If~ah~~~L~D~~l~~~v~~~I 93 (258)
T 1zym_A 39 EVERFLSGRAKASAQLETIKTKAGETFGEEKEAIFEGHIMLLEDEELEQEIIALI 93 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3333333333444444444444321 11233447777778899999988776544
No 112
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=20.76 E-value=3.2e+02 Score=25.28 Aligned_cols=48 Identities=15% Similarity=0.367 Sum_probs=26.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q 023639 56 LDGELERLKRDRNVLMAEIVRLRQHQQ------QSRDQLSAMEDRLLSTEKKQQ 103 (279)
Q Consensus 56 l~~Ele~Lkrd~~~L~~El~~LRqqq~------~~~~ql~~m~~Rl~~~E~kQq 103 (279)
+..-++.|+.+.+.|..++.++.++.. ..+.++..+++++...+++-.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 298 (426)
T 1lrz_A 245 FDEYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIE 298 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666654332 224556666666666555444
No 113
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=20.74 E-value=1.5e+02 Score=18.69 Aligned_cols=15 Identities=20% Similarity=0.414 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 023639 60 LERLKRDRNVLMAEI 74 (279)
Q Consensus 60 le~Lkrd~~~L~~El 74 (279)
+..+|.+..++..|+
T Consensus 4 laaikqelaaikkel 18 (34)
T 3r4h_A 4 LAAIKQELAAIKKEL 18 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444433333
No 114
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=20.52 E-value=1.6e+02 Score=24.43 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 69 VLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 100 (279)
Q Consensus 69 ~L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~ 100 (279)
.|...+.++..+....+.+|..|+.|++.+|.
T Consensus 4 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 2gkw_A 4 LLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445555555555556677777777777774
No 115
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=20.50 E-value=2.9e+02 Score=21.06 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 70 LMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFL 109 (279)
Q Consensus 70 L~~El~~LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFL 109 (279)
+...+-.+.+.....+..+..|..|++.+|.--.+.-.-|
T Consensus 28 ~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L 67 (101)
T 3u1c_A 28 AEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEEL 67 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444555556666666665554433333333
No 116
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=20.30 E-value=1.5e+02 Score=27.10 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 73 EIVRLRQHQQQSRDQLSAMEDRLLS 97 (279)
Q Consensus 73 El~~LRqqq~~~~~ql~~m~~Rl~~ 97 (279)
|+..|+.+.+..+.+++.++..+..
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~ 210 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERST 210 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444333
No 117
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=20.17 E-value=1.8e+02 Score=27.66 Aligned_cols=66 Identities=14% Similarity=0.124 Sum_probs=39.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCchH
Q 023639 54 YGLDGELERLKRDRNVLMAEIVR-LRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLA-KALKNPSFF 119 (279)
Q Consensus 54 ~~l~~Ele~Lkrd~~~L~~El~~-LRqqq~~~~~ql~~m~~Rl~~~E~kQqQm~sFLa-kal~nP~Fl 119 (279)
..+..+++.|+.+++.+..+|.+ -.+.-.....++..+.++|..+|.....+-.-|. .++.=|+++
T Consensus 38 r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~ 105 (421)
T 1ses_A 38 QELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPP 105 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 35667788888888888877763 1122234455666677777777666665555444 333344443
Done!