Query 023639
Match_columns 279
No_of_seqs 172 out of 416
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 10:17:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023639.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023639hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ivsa1 a.2.7.3 (A:797-862) Va 56.7 8.3 0.00061 25.7 4.8 19 57-75 3-21 (66)
2 d1zyma1 a.60.10.1 (A:22-144) E 55.8 34 0.0024 24.9 8.8 54 73-126 18-72 (123)
3 d1seta1 a.2.7.1 (A:1-110) Sery 53.5 27 0.002 25.0 7.6 53 55-107 39-92 (110)
4 d1nkpa_ a.38.1.1 (A:) Myc prot 37.1 34 0.0025 23.5 5.7 31 58-88 52-82 (88)
5 d2htsa_ a.4.5.22 (A:) Heat-sho 33.5 4.3 0.00032 29.4 0.1 10 1-10 62-71 (92)
6 d1lrza1 a.2.7.4 (A:245-309) Me 28.1 80 0.0058 21.1 7.7 51 58-108 3-59 (65)
7 d1nkpb_ a.38.1.1 (B:) Max prot 25.2 38 0.0028 23.0 4.1 31 58-88 47-77 (83)
8 d1hksa_ a.4.5.22 (A:) Heat-sho 24.9 6.4 0.00047 28.7 -0.3 11 1-11 64-74 (106)
9 d1q8ha_ g.32.1.1 (A:) Osteocal 23.0 11 0.00084 23.0 0.7 13 265-277 14-26 (37)
10 d2azeb1 e.63.1.2 (B:201-301) T 22.5 74 0.0054 22.9 5.5 29 68-96 4-32 (101)
11 d1ji8a_ d.203.1.1 (A:) DsrC, t 21.7 22 0.0016 26.6 2.2 36 239-275 6-42 (111)
12 d1nlwa_ a.38.1.1 (A:) Mad prot 21.6 84 0.0061 20.9 5.3 27 58-84 47-73 (79)
13 d2azeb1 e.63.1.2 (B:201-301) T 21.3 83 0.006 22.6 5.5 32 61-92 4-35 (101)
No 1
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=56.69 E-value=8.3 Score=25.73 Aligned_cols=19 Identities=16% Similarity=0.053 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 023639 57 DGELERLKRDRNVLMAEIV 75 (279)
Q Consensus 57 ~~Ele~Lkrd~~~L~~El~ 75 (279)
+.|+.+|.++...|..+|.
T Consensus 3 ~~E~~RL~K~l~kl~~~i~ 21 (66)
T d1ivsa1 3 EEWRRRQEKRLKELLALAE 21 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544444
No 2
>d1zyma1 a.60.10.1 (A:22-144) Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain {Escherichia coli [TaxId: 562]}
Probab=55.83 E-value=34 Score=24.94 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCchHHHHHHhH
Q 023639 73 EIVRLRQHQQQSRDQLSAMEDRLLSTE-KKQQQMMTFLAKALKNPSFFQQLAQSN 126 (279)
Q Consensus 73 El~~LRqqq~~~~~ql~~m~~Rl~~~E-~kQqQm~sFLakal~nP~Fl~~L~~~~ 126 (279)
|+.+|++=...+..+|..+.+++...- .....++..-..++++|.|+..+....
T Consensus 18 E~~rl~~A~~~~~~~L~~l~~~~~~~~~~e~a~If~ah~~iL~D~~l~~~v~~~I 72 (123)
T d1zyma1 18 EVERFLSGRAKASAQLETIKTKAGETFGEEKEAIFEGHIMLLEDEELEQEIIALI 72 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 444444444444555555555554432 234568888889999999999877654
No 3
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=53.45 E-value=27 Score=24.96 Aligned_cols=53 Identities=11% Similarity=0.168 Sum_probs=31.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 55 GLDGELERLKRDRNVLMAEIVRLRQ-HQQQSRDQLSAMEDRLLSTEKKQQQMMT 107 (279)
Q Consensus 55 ~l~~Ele~Lkrd~~~L~~El~~LRq-qq~~~~~ql~~m~~Rl~~~E~kQqQm~s 107 (279)
.+..+++.|+.+++.+..+|.+... .-.....++..+...+..+|...+.+-+
T Consensus 39 ~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~ 92 (110)
T d1seta1 39 ELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEA 92 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777754332 1223344555566666666655555444
No 4
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.08 E-value=34 Score=23.51 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRLRQHQQQSRDQL 88 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql 88 (279)
..|..|+.....|..++..|+++......++
T Consensus 52 ~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l 82 (88)
T d1nkpa_ 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKL 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666554444333
No 5
>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}
Probab=33.53 E-value=4.3 Score=29.42 Aligned_cols=10 Identities=40% Similarity=0.577 Sum_probs=8.2
Q ss_pred CCcccccCCC
Q 023639 1 MQGFRKVDPD 10 (279)
Q Consensus 1 tYGFRKVdpd 10 (279)
+||||||...
T Consensus 62 ~yGF~kv~~~ 71 (92)
T d2htsa_ 62 MYGWHKVQDV 71 (92)
T ss_dssp HTTEECCCCS
T ss_pred hCCeEEeecC
Confidence 5999999864
No 6
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=28.11 E-value=80 Score=21.13 Aligned_cols=51 Identities=12% Similarity=0.293 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRLRQHQQ------QSRDQLSAMEDRLLSTEKKQQQMMTF 108 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LRqqq~------~~~~ql~~m~~Rl~~~E~kQqQm~sF 108 (279)
+-+..|+.+...|..+|.++..... -...++..+++++.+.++|-...-.|
T Consensus 3 eYl~~L~~~~~~L~~~i~k~~~~leknP~skK~~nk~~el~~Q~~s~~~ki~Ea~~l 59 (65)
T d1lrza1 3 EYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGKRL 59 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777766654432 23344445555555554444444333
No 7
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.24 E-value=38 Score=23.00 Aligned_cols=31 Identities=13% Similarity=0.258 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRLRQHQQQSRDQL 88 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LRqqq~~~~~ql 88 (279)
.-|..|+.....|..++..|+++...+..+|
T Consensus 47 ~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l 77 (83)
T d1nkpb_ 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666655554444333
No 8
>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]}
Probab=24.92 E-value=6.4 Score=28.71 Aligned_cols=11 Identities=36% Similarity=0.588 Sum_probs=8.7
Q ss_pred CCcccccCCCc
Q 023639 1 MQGFRKVDPDR 11 (279)
Q Consensus 1 tYGFRKVdpdr 11 (279)
+|||+||.+..
T Consensus 64 ~yGF~kv~~~~ 74 (106)
T d1hksa_ 64 MYGFHKITSID 74 (106)
T ss_dssp HHCCCCSSCSS
T ss_pred HCCCEEeeccc
Confidence 49999997654
No 9
>d1q8ha_ g.32.1.1 (A:) Osteocalcin {Pig (Sus scrofa) [TaxId: 9823]}
Probab=22.98 E-value=11 Score=22.96 Aligned_cols=13 Identities=23% Similarity=0.741 Sum_probs=11.1
Q ss_pred hhhhHHHHhhhcC
Q 023639 265 GEELQDLVDQMGY 277 (279)
Q Consensus 265 ~~~~~~lv~~~~~ 277 (279)
.-+|.+|+||+||
T Consensus 14 npdcdelad~igf 26 (37)
T d1q8ha_ 14 NPDCDELADHIGF 26 (37)
T ss_dssp SHHHHHHHHHHCH
T ss_pred CCCHHHHHHHhhH
Confidence 3579999999997
No 10
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.54 E-value=74 Score=22.92 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 68 NVLMAEIVRLRQHQQQSRDQLSAMEDRLL 96 (279)
Q Consensus 68 ~~L~~El~~LRqqq~~~~~ql~~m~~Rl~ 96 (279)
..|..||..|.++-+.....+..+.++|+
T Consensus 4 ~~L~~El~~L~~~E~~LD~li~~~~~~L~ 32 (101)
T d2azeb1 4 EGLTQDLRQLQESEQQLDHLMNICTTQLR 32 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555444444444444444443
No 11
>d1ji8a_ d.203.1.1 (A:) DsrC, the gamma subunit of dissimilatory sulfite reductase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=21.69 E-value=22 Score=26.58 Aligned_cols=36 Identities=25% Similarity=0.497 Sum_probs=27.6
Q ss_pred CccccccCcccceeeccccccCCCCchhh-hHHHHhhh
Q 023639 239 PEEVVVKDQSEAEVELEDLVATPTDWGEE-LQDLVDQM 275 (279)
Q Consensus 239 ~ee~~~~~~~~~~~e~Edlv~~p~~W~~~-~~~lv~~~ 275 (279)
|.|+.| +...|.+|-+.+..+|.+|+++ ...|+.+.
T Consensus 6 p~~~~v-~g~~ie~D~~GfL~~~~dW~e~vA~~lA~~~ 42 (111)
T d1ji8a_ 6 PGEYQV-DGKKVILDEDCFMQNPEDWDEKVAEWLAREL 42 (111)
T ss_dssp SEEEEC-SSCEEEEEGGGEECCGGGCCHHHHHHHHHHH
T ss_pred CeeEEE-CCEEEEECCCCccCChhhcCHHHHHHHHHcc
Confidence 544444 6778899999999999999977 66777553
No 12
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.62 E-value=84 Score=20.86 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 58 GELERLKRDRNVLMAEIVRLRQHQQQS 84 (279)
Q Consensus 58 ~Ele~Lkrd~~~L~~El~~LRqqq~~~ 84 (279)
.-|..|+.....|..++..|+.+++..
T Consensus 47 ~yI~~L~~~~~~l~~~~~~L~~~~~~L 73 (79)
T d1nlwa_ 47 LHIKKLEDSDRKAVHQIDQLQREQRHL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666665555554433
No 13
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.28 E-value=83 Score=22.65 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023639 61 ERLKRDRNVLMAEIVRLRQHQQQSRDQLSAME 92 (279)
Q Consensus 61 e~Lkrd~~~L~~El~~LRqqq~~~~~ql~~m~ 92 (279)
..|+.|.+.|..+-.+|-+....+..+|..|.
T Consensus 4 ~~L~~El~~L~~~E~~LD~li~~~~~~L~~lt 35 (101)
T d2azeb1 4 EGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 35 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444444444444
Done!