Query 023640
Match_columns 279
No_of_seqs 170 out of 1937
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 05:32:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023640.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023640hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14461 ribosomal RNA large s 100.0 9.6E-45 2.1E-49 323.1 26.8 249 8-258 93-365 (371)
2 PRK14467 ribosomal RNA large s 100.0 1.4E-44 3E-49 324.2 26.6 248 8-257 85-341 (348)
3 PRK14466 ribosomal RNA large s 100.0 7.4E-44 1.6E-48 317.1 27.7 249 5-258 89-338 (345)
4 PRK14459 ribosomal RNA large s 100.0 6.1E-44 1.3E-48 321.1 26.7 247 8-256 107-370 (373)
5 PRK14457 ribosomal RNA large s 100.0 1.1E-43 2.3E-48 318.5 27.4 247 8-257 87-342 (345)
6 TIGR00048 radical SAM enzyme, 100.0 1.4E-43 3.1E-48 319.6 27.9 252 8-261 91-349 (355)
7 PRK14462 ribosomal RNA large s 100.0 3.7E-43 8.1E-48 314.9 27.3 239 17-257 106-350 (356)
8 PRK14468 ribosomal RNA large s 100.0 4.7E-43 1E-47 314.9 28.0 254 8-263 79-339 (343)
9 PRK14465 ribosomal RNA large s 100.0 3E-43 6.6E-48 313.9 26.1 247 8-257 89-341 (342)
10 PRK14470 ribosomal RNA large s 100.0 6E-43 1.3E-47 312.6 27.9 247 8-257 82-334 (336)
11 PRK14454 ribosomal RNA large s 100.0 4.2E-43 9.2E-48 314.9 26.6 249 8-258 87-339 (342)
12 PRK14455 ribosomal RNA large s 100.0 8.3E-43 1.8E-47 314.8 27.0 250 8-259 95-351 (356)
13 PRK14456 ribosomal RNA large s 100.0 3.6E-42 7.8E-47 310.8 28.1 248 8-257 107-365 (368)
14 PRK14463 ribosomal RNA large s 100.0 5.3E-42 1.2E-46 308.5 27.9 247 8-257 89-337 (349)
15 PRK14453 chloramphenicol/florf 100.0 4.6E-42 1E-46 308.2 27.3 248 8-257 85-342 (347)
16 PRK14469 ribosomal RNA large s 100.0 1.3E-41 2.7E-46 307.0 27.7 248 8-258 87-338 (343)
17 PRK14460 ribosomal RNA large s 100.0 9.4E-42 2E-46 307.5 26.8 250 8-260 87-347 (354)
18 PRK11194 ribosomal RNA large s 100.0 1.7E-41 3.6E-46 306.3 27.2 249 9-260 90-352 (372)
19 COG0820 Predicted Fe-S-cluster 100.0 8.9E-41 1.9E-45 293.7 24.1 250 10-261 89-346 (349)
20 PRK14464 ribosomal RNA large s 100.0 3.6E-40 7.9E-45 293.7 22.3 244 8-257 85-329 (344)
21 PRK11145 pflA pyruvate formate 100.0 9.9E-31 2.1E-35 226.6 21.4 206 17-237 19-244 (246)
22 COG1180 PflA Pyruvate-formate 100.0 2.1E-29 4.5E-34 218.8 20.2 204 15-236 32-243 (260)
23 TIGR02493 PFLA pyruvate format 100.0 1.3E-27 2.8E-32 205.6 23.7 203 12-230 9-233 (235)
24 COG2896 MoaA Molybdenum cofact 100.0 1.7E-26 3.6E-31 202.7 22.1 228 22-263 12-266 (322)
25 TIGR01290 nifB nitrogenase cof 99.9 2.4E-26 5.2E-31 213.3 22.5 201 23-230 26-256 (442)
26 PRK10076 pyruvate formate lyas 99.9 2.3E-26 5E-31 193.8 20.1 182 45-239 15-211 (213)
27 PRK13762 tRNA-modifying enzyme 99.9 1E-25 2.3E-30 201.3 23.7 219 29-264 66-316 (322)
28 TIGR02494 PFLE_PFLC glycyl-rad 99.9 3.1E-26 6.7E-31 203.6 19.1 204 15-234 11-295 (295)
29 PRK13361 molybdenum cofactor b 99.9 4.2E-25 9E-30 199.0 25.4 228 22-262 15-269 (329)
30 PRK00164 moaA molybdenum cofac 99.9 2.1E-25 4.6E-30 201.3 21.3 176 22-211 18-201 (331)
31 COG0731 Fe-S oxidoreductases [ 99.9 6.3E-25 1.4E-29 190.4 21.9 216 4-237 16-248 (296)
32 PLN02951 Molybderin biosynthes 99.9 2.5E-24 5.4E-29 196.4 24.8 174 22-209 59-240 (373)
33 TIGR02668 moaA_archaeal probab 99.9 2.4E-24 5.2E-29 192.0 22.0 174 22-209 11-189 (302)
34 TIGR02666 moaA molybdenum cofa 99.9 6.3E-24 1.4E-28 191.9 23.9 176 22-211 11-196 (334)
35 PRK05301 pyrroloquinoline quin 99.9 1.5E-23 3.3E-28 192.4 23.9 195 20-229 15-218 (378)
36 TIGR02109 PQQ_syn_pqqE coenzym 99.9 2.9E-23 6.3E-28 189.3 22.5 194 20-228 6-208 (358)
37 TIGR02495 NrdG2 anaerobic ribo 99.9 5.8E-23 1.3E-27 171.3 20.3 156 28-197 23-183 (191)
38 TIGR03470 HpnH hopanoid biosyn 99.9 1.1E-22 2.5E-27 182.1 22.2 189 21-227 28-223 (318)
39 TIGR03278 methan_mark_10 putat 99.9 5.2E-21 1.1E-25 174.9 22.2 196 28-237 6-247 (404)
40 COG1313 PflX Uncharacterized F 99.9 3.6E-21 7.8E-26 163.5 19.4 211 3-236 104-330 (335)
41 PRK13758 anaerobic sulfatase-m 99.9 5.1E-21 1.1E-25 175.3 21.7 200 22-228 5-220 (370)
42 PRK13745 anaerobic sulfatase-m 99.9 2.2E-20 4.8E-25 173.1 23.4 185 15-207 7-205 (412)
43 COG2100 Predicted Fe-S oxidore 99.9 5.2E-20 1.1E-24 158.5 20.4 208 19-236 105-331 (414)
44 TIGR03822 AblA_like_2 lysine-2 99.9 4.5E-19 9.9E-24 158.9 25.7 202 24-244 91-308 (321)
45 COG0641 AslB Arylsulfatase reg 99.8 1.2E-19 2.7E-24 164.7 19.4 192 28-227 14-217 (378)
46 TIGR03821 AblA_like_1 lysine-2 99.8 3.1E-19 6.7E-24 159.7 20.7 206 18-245 95-315 (321)
47 TIGR00238 KamA family protein. 99.8 1.7E-18 3.7E-23 155.7 22.3 202 24-242 116-329 (331)
48 COG0535 Predicted Fe-S oxidore 99.8 3.3E-18 7.1E-23 154.8 22.3 195 18-227 16-219 (347)
49 smart00729 Elp3 Elongator prot 99.8 1.8E-18 3.9E-23 145.0 17.1 181 22-209 2-193 (216)
50 TIGR03365 Bsubt_queE 7-cyano-7 99.8 1.8E-17 3.9E-22 142.6 19.7 133 20-176 22-160 (238)
51 COG5014 Predicted Fe-S oxidore 99.8 2.1E-18 4.6E-23 136.2 12.6 157 29-198 49-214 (228)
52 TIGR03820 lys_2_3_AblA lysine- 99.8 9.2E-17 2E-21 146.7 24.5 197 27-243 114-325 (417)
53 PF04055 Radical_SAM: Radical 99.8 2.2E-17 4.8E-22 132.8 16.3 156 27-193 3-166 (166)
54 cd01335 Radical_SAM Radical SA 99.7 1.3E-16 2.8E-21 132.0 17.8 172 27-209 3-182 (204)
55 PRK07094 biotin synthase; Prov 99.7 9.8E-15 2.1E-19 131.4 23.5 192 24-230 42-244 (323)
56 TIGR02826 RNR_activ_nrdG3 anae 99.7 6.4E-16 1.4E-20 122.9 11.6 97 2-113 1-100 (147)
57 TIGR02491 NrdG anaerobic ribon 99.7 2.7E-16 5.8E-21 126.6 9.4 113 15-136 12-134 (154)
58 PF13353 Fer4_12: 4Fe-4S singl 99.6 6.5E-16 1.4E-20 122.0 7.4 88 18-114 5-97 (139)
59 PRK09240 thiH thiamine biosynt 99.6 6.6E-14 1.4E-18 128.0 21.6 196 25-230 78-286 (371)
60 TIGR00433 bioB biotin syntheta 99.6 4.2E-13 9E-18 119.3 23.7 232 27-274 35-289 (296)
61 PF13394 Fer4_14: 4Fe-4S singl 99.6 6.8E-15 1.5E-19 113.2 6.9 83 28-114 5-93 (119)
62 PRK11121 nrdG anaerobic ribonu 99.5 4.4E-14 9.6E-19 113.5 9.6 89 16-113 14-109 (154)
63 COG0602 NrdG Organic radical a 99.5 2.6E-14 5.6E-19 120.6 8.5 85 19-113 21-111 (212)
64 PRK15108 biotin synthase; Prov 99.5 3.8E-12 8.2E-17 115.3 22.8 188 27-230 49-251 (345)
65 PRK08508 biotin synthase; Prov 99.5 1.9E-12 4.1E-17 114.1 20.2 193 22-230 8-214 (279)
66 COG1509 KamA Lysine 2,3-aminom 99.5 6.8E-12 1.5E-16 110.7 23.4 202 28-246 118-332 (369)
67 PRK06256 biotin synthase; Vali 99.5 3.1E-12 6.6E-17 115.8 21.7 189 27-230 64-265 (336)
68 TIGR02026 BchE magnesium-proto 99.5 2.4E-12 5.2E-17 122.2 20.8 175 24-208 196-378 (497)
69 TIGR01125 MiaB-like tRNA modif 99.5 5.1E-12 1.1E-16 118.0 22.1 181 21-209 135-328 (430)
70 PLN02389 biotin synthase 99.5 6E-12 1.3E-16 115.0 21.6 187 27-230 89-293 (379)
71 PRK14338 (dimethylallyl)adenos 99.5 9.7E-12 2.1E-16 116.9 22.6 180 19-209 153-348 (459)
72 PRK14862 rimO ribosomal protei 99.5 6E-12 1.3E-16 117.7 20.7 179 20-209 138-339 (440)
73 COG2108 Uncharacterized conser 99.5 2.3E-12 4.9E-17 111.9 16.3 157 19-202 28-198 (353)
74 TIGR03699 mena_SCO4550 menaqui 99.5 1.8E-12 4E-17 117.5 16.6 197 26-230 46-263 (340)
75 TIGR02351 thiH thiazole biosyn 99.5 6.7E-12 1.5E-16 114.7 19.8 196 25-230 77-285 (366)
76 TIGR03471 HpnJ hopanoid biosyn 99.5 1.1E-11 2.4E-16 117.2 21.1 173 23-208 198-378 (472)
77 TIGR03551 F420_cofH 7,8-dideme 99.5 4.7E-12 1E-16 114.9 17.6 194 24-230 42-265 (343)
78 PRK06245 cofG FO synthase subu 99.4 8.3E-12 1.8E-16 113.0 18.7 194 23-230 14-236 (336)
79 KOG2876 Molybdenum cofactor bi 99.4 1.3E-13 2.8E-18 116.1 6.3 171 25-209 15-193 (323)
80 TIGR00423 radical SAM domain p 99.4 1.7E-11 3.8E-16 109.6 20.3 197 23-230 7-230 (309)
81 PRK05481 lipoyl synthase; Prov 99.4 4.9E-11 1.1E-15 105.5 22.3 204 19-236 51-265 (289)
82 PRK06267 hypothetical protein; 99.4 5.6E-11 1.2E-15 108.0 22.2 188 26-230 32-231 (350)
83 PRK09249 coproporphyrinogen II 99.4 1.1E-10 2.3E-15 109.8 23.4 176 21-206 50-241 (453)
84 PRK05660 HemN family oxidoredu 99.4 8.3E-11 1.8E-15 108.1 21.8 177 22-208 8-199 (378)
85 TIGR00539 hemN_rel putative ox 99.4 5.9E-11 1.3E-15 108.4 20.6 171 29-208 8-192 (360)
86 PRK12928 lipoyl synthase; Prov 99.4 1.4E-10 3.1E-15 102.4 21.3 205 19-236 58-273 (290)
87 PRK13347 coproporphyrinogen II 99.4 1.7E-10 3.8E-15 108.4 23.1 180 16-205 46-241 (453)
88 TIGR00510 lipA lipoate synthas 99.4 2.4E-10 5.2E-15 101.3 22.2 205 19-236 61-276 (302)
89 PRK05799 coproporphyrinogen II 99.4 2.1E-10 4.5E-15 105.4 22.2 177 22-208 5-191 (374)
90 PRK08446 coproporphyrinogen II 99.4 2.2E-10 4.7E-15 104.3 21.4 195 29-235 8-221 (350)
91 PRK14334 (dimethylallyl)adenos 99.3 2.5E-10 5.5E-15 106.9 21.9 182 18-209 135-330 (440)
92 TIGR01579 MiaB-like-C MiaB-lik 99.3 1.7E-10 3.7E-15 107.3 19.7 176 21-208 138-330 (414)
93 TIGR00538 hemN oxygen-independ 99.3 3.6E-10 7.7E-15 106.4 22.0 176 20-205 49-240 (455)
94 PRK08207 coproporphyrinogen II 99.3 9E-10 1.9E-14 104.0 24.1 182 18-208 161-361 (488)
95 TIGR00089 RNA modification enz 99.3 3.2E-10 6.9E-15 106.0 20.6 180 20-208 138-331 (429)
96 PLN02428 lipoic acid synthase 99.3 6.1E-10 1.3E-14 100.0 21.0 198 26-236 107-316 (349)
97 PRK14332 (dimethylallyl)adenos 99.3 7.5E-10 1.6E-14 103.8 22.1 179 21-209 154-344 (449)
98 PRK08599 coproporphyrinogen II 99.3 8.7E-10 1.9E-14 101.4 21.7 177 22-208 3-192 (377)
99 PRK14331 (dimethylallyl)adenos 99.3 5.3E-10 1.1E-14 104.7 20.4 177 20-208 145-337 (437)
100 TIGR01578 MiaB-like-B MiaB-lik 99.3 3.9E-10 8.5E-15 105.0 19.2 180 19-208 131-325 (420)
101 PRK14340 (dimethylallyl)adenos 99.3 2.8E-10 6.2E-15 106.5 18.0 179 19-208 147-340 (445)
102 PRK14336 (dimethylallyl)adenos 99.3 9E-10 1.9E-14 102.5 21.1 181 16-208 119-316 (418)
103 PRK05628 coproporphyrinogen II 99.3 1.9E-09 4.2E-14 99.0 22.6 170 29-207 10-199 (375)
104 PRK14327 (dimethylallyl)adenos 99.3 2.1E-09 4.5E-14 101.9 22.7 178 19-208 210-404 (509)
105 PRK14328 (dimethylallyl)adenos 99.2 1.8E-09 3.9E-14 101.2 21.5 178 19-208 145-339 (439)
106 PRK14325 (dimethylallyl)adenos 99.2 2E-09 4.4E-14 101.0 21.7 178 19-208 145-341 (444)
107 PRK08208 coproporphyrinogen II 99.2 2E-09 4.3E-14 100.6 21.2 181 20-208 39-233 (430)
108 PRK14335 (dimethylallyl)adenos 99.2 3.1E-09 6.8E-14 99.9 22.2 179 20-208 151-350 (455)
109 TIGR03700 mena_SCO4494 putativ 99.2 1.4E-09 2.9E-14 99.1 18.5 196 24-230 51-272 (351)
110 TIGR01574 miaB-methiolase tRNA 99.2 2.4E-09 5.1E-14 100.4 19.8 180 19-208 143-339 (438)
111 TIGR03550 F420_cofG 7,8-dideme 99.2 1.3E-09 2.8E-14 98.1 17.1 196 23-230 6-232 (322)
112 PRK14339 (dimethylallyl)adenos 99.2 7.9E-09 1.7E-13 96.2 22.1 178 19-208 125-322 (420)
113 PRK14329 (dimethylallyl)adenos 99.2 7.5E-09 1.6E-13 97.6 22.1 178 20-208 167-365 (467)
114 TIGR01212 radical SAM protein, 99.2 2E-08 4.4E-13 89.5 23.1 197 28-235 25-253 (302)
115 PRK14326 (dimethylallyl)adenos 99.2 1E-08 2.2E-13 97.5 22.4 177 20-208 156-349 (502)
116 PRK14330 (dimethylallyl)adenos 99.2 8.5E-09 1.8E-13 96.5 21.6 178 20-208 139-332 (434)
117 TIGR01210 conserved hypothetic 99.1 2.6E-08 5.6E-13 89.2 23.3 229 25-263 19-280 (313)
118 COG1964 Predicted Fe-S oxidore 99.1 1.2E-09 2.6E-14 98.9 14.5 144 47-208 89-243 (475)
119 PRK07360 FO synthase subunit 2 99.1 2.6E-09 5.7E-14 97.9 17.2 164 25-199 64-245 (371)
120 PRK14337 (dimethylallyl)adenos 99.1 2.1E-08 4.5E-13 94.2 22.5 179 20-208 147-341 (446)
121 PRK08445 hypothetical protein; 99.1 6.1E-09 1.3E-13 94.5 18.3 195 25-230 46-268 (348)
122 COG1625 Fe-S oxidoreductase, r 99.1 8.8E-09 1.9E-13 92.8 17.6 198 35-239 44-255 (414)
123 PRK05904 coproporphyrinogen II 99.1 1.7E-08 3.7E-13 91.8 19.4 203 20-235 6-228 (353)
124 PRK00955 hypothetical protein; 99.1 1.1E-08 2.4E-13 98.0 18.6 199 3-208 272-519 (620)
125 PRK14333 (dimethylallyl)adenos 99.1 2.3E-08 4.9E-13 94.0 20.0 177 21-208 148-347 (448)
126 COG0621 MiaB 2-methylthioadeni 99.0 5.4E-08 1.2E-12 89.9 20.4 182 18-208 141-337 (437)
127 PRK06582 coproporphyrinogen II 99.0 1.3E-07 2.7E-12 87.3 22.8 176 21-207 12-201 (390)
128 PRK07379 coproporphyrinogen II 99.0 1.1E-07 2.4E-12 88.1 22.3 178 21-208 11-207 (400)
129 PRK06294 coproporphyrinogen II 99.0 9.5E-08 2.1E-12 87.6 21.6 174 21-208 7-195 (370)
130 PRK09057 coproporphyrinogen II 99.0 1.8E-07 3.9E-12 86.2 23.2 203 21-235 5-233 (380)
131 PRK09613 thiH thiamine biosynt 99.0 1.7E-07 3.8E-12 87.8 23.0 208 27-241 90-319 (469)
132 PRK08629 coproporphyrinogen II 99.0 1.4E-07 3E-12 88.1 21.5 181 18-208 50-239 (433)
133 PRK08898 coproporphyrinogen II 99.0 4.1E-07 8.8E-12 84.2 24.0 180 19-208 18-213 (394)
134 PRK08444 hypothetical protein; 99.0 8.1E-08 1.8E-12 87.2 18.7 196 25-230 53-271 (353)
135 PRK05927 hypothetical protein; 98.9 5.1E-08 1.1E-12 88.5 16.9 194 26-230 50-269 (350)
136 PRK01254 hypothetical protein; 98.9 1.6E-07 3.6E-12 89.9 20.7 201 3-208 353-598 (707)
137 PRK09058 coproporphyrinogen II 98.9 3.8E-07 8.2E-12 85.8 22.7 179 20-208 61-255 (449)
138 COG0502 BioB Biotin synthase a 98.9 3.9E-07 8.4E-12 81.2 19.6 189 22-230 53-258 (335)
139 COG1533 SplB DNA repair photol 98.9 2.1E-07 4.5E-12 82.4 17.9 165 25-199 33-214 (297)
140 PTZ00413 lipoate synthase; Pro 98.9 1.1E-06 2.3E-11 79.3 22.1 199 27-236 155-364 (398)
141 COG1856 Uncharacterized homolo 98.8 7.2E-07 1.6E-11 74.1 17.6 189 27-230 17-215 (275)
142 PRK05926 hypothetical protein; 98.8 1.9E-07 4.1E-12 85.3 15.5 169 27-207 74-260 (370)
143 PRK09234 fbiC FO synthase; Rev 98.8 4.8E-07 1E-11 90.4 18.0 195 25-230 530-752 (843)
144 COG1032 Fe-S oxidoreductase [E 98.7 6E-07 1.3E-11 84.9 17.1 181 22-209 199-397 (490)
145 TIGR03279 cyano_FeS_chp putati 98.7 1.8E-06 3.9E-11 79.4 18.6 117 107-229 123-249 (433)
146 PRK09234 fbiC FO synthase; Rev 98.7 1.3E-06 2.8E-11 87.4 17.7 196 23-230 73-301 (843)
147 COG1060 ThiH Thiamine biosynth 98.5 6.7E-06 1.4E-10 75.0 17.3 196 24-230 62-283 (370)
148 TIGR01211 ELP3 histone acetylt 98.3 0.0002 4.4E-09 68.2 22.7 205 18-230 65-330 (522)
149 COG2516 Biotin synthase-relate 98.3 5.7E-05 1.2E-09 66.3 15.5 213 6-228 14-248 (339)
150 COG0320 LipA Lipoate synthase 98.2 0.00016 3.4E-09 62.3 16.8 199 24-235 73-281 (306)
151 COG0635 HemN Coproporphyrinoge 98.2 0.00049 1.1E-08 64.1 21.6 173 20-202 34-223 (416)
152 COG1244 Predicted Fe-S oxidore 98.2 0.00037 8.1E-09 61.3 19.0 237 19-264 45-318 (358)
153 COG1243 ELP3 Histone acetyltra 98.1 0.00044 9.4E-09 63.6 17.9 120 104-229 187-321 (515)
154 KOG1160 Fe-S oxidoreductase [E 97.9 9.7E-05 2.1E-09 67.2 10.2 158 27-195 289-471 (601)
155 cd03174 DRE_TIM_metallolyase D 97.8 0.0036 7.8E-08 54.5 19.0 180 46-244 13-202 (265)
156 COG1242 Predicted Fe-S oxidore 97.5 0.035 7.7E-07 48.2 19.2 197 34-242 45-265 (312)
157 KOG2672 Lipoate synthase [Coen 97.3 0.0079 1.7E-07 52.0 13.3 201 22-235 113-324 (360)
158 COG1031 Uncharacterized Fe-S o 96.9 0.19 4.2E-06 46.7 19.0 185 15-208 176-406 (560)
159 COG4277 Predicted DNA-binding 96.5 0.14 3E-06 45.0 14.2 197 27-236 60-290 (404)
160 KOG2900 Biotin synthase [Coenz 96.2 0.071 1.5E-06 45.6 10.3 159 22-196 85-255 (380)
161 KOG2492 CDK5 activator-binding 95.9 0.15 3.3E-06 46.6 11.5 56 18-74 217-273 (552)
162 KOG0180 20S proteasome, regula 91.6 0.18 4E-06 40.5 3.0 68 3-76 96-183 (204)
163 KOG4355 Predicted Fe-S oxidore 91.4 9.6 0.00021 35.0 13.9 172 24-208 190-380 (547)
164 cd07939 DRE_TIM_NifV Streptomy 86.1 22 0.00047 30.8 20.6 172 46-238 14-186 (259)
165 TIGR02660 nifV_homocitr homoci 81.3 44 0.00095 30.6 20.4 172 46-238 17-189 (365)
166 TIGR02090 LEU1_arch isopropylm 80.7 46 0.001 30.5 21.0 171 46-237 16-187 (363)
167 PF06415 iPGM_N: BPG-independe 80.0 15 0.00032 31.3 8.5 78 152-234 14-94 (223)
168 cd07948 DRE_TIM_HCS Saccharomy 78.3 45 0.00098 29.0 21.4 171 46-237 16-187 (262)
169 cd07940 DRE_TIM_IPMS 2-isoprop 75.2 55 0.0012 28.4 20.2 169 46-234 14-186 (268)
170 PF04551 GcpE: GcpE protein; 74.7 31 0.00067 31.5 9.4 140 82-258 117-281 (359)
171 PRK11858 aksA trans-homoaconit 72.0 83 0.0018 29.0 20.8 169 46-237 20-191 (378)
172 TIGR00612 ispG_gcpE 1-hydroxy- 71.6 79 0.0017 28.7 14.0 38 66-110 93-130 (346)
173 TIGR00190 thiC thiamine biosyn 71.4 41 0.00089 31.2 9.5 74 47-134 135-225 (423)
174 COG2875 CobM Precorrin-4 methy 70.1 16 0.00034 31.3 6.1 49 46-97 56-104 (254)
175 PRK14040 oxaloacetate decarbox 69.3 1.2E+02 0.0026 29.9 18.7 160 47-239 22-203 (593)
176 PRK13352 thiamine biosynthesis 69.3 50 0.0011 30.8 9.6 74 47-134 138-228 (431)
177 TIGR02803 ExbD_1 TonB system t 67.1 38 0.00083 25.6 7.4 57 47-109 65-121 (122)
178 COG0813 DeoD Purine-nucleoside 63.7 93 0.002 26.5 10.2 97 68-178 58-158 (236)
179 COG0648 Nfo Endonuclease IV [D 63.2 58 0.0013 28.8 8.6 106 150-258 119-227 (280)
180 smart00642 Aamy Alpha-amylase 62.1 37 0.00081 27.3 6.8 21 218-239 68-88 (166)
181 PRK01076 L-rhamnose isomerase; 62.1 75 0.0016 29.5 9.3 117 46-181 67-192 (419)
182 COG0007 CysG Uroporphyrinogen- 60.4 24 0.00052 30.5 5.6 54 47-108 63-116 (244)
183 TIGR01681 HAD-SF-IIIC HAD-supe 58.7 78 0.0017 24.0 8.3 25 82-111 31-55 (128)
184 COG1103 Archaea-specific pyrid 58.0 1.4E+02 0.003 26.6 12.9 141 35-199 47-188 (382)
185 PF13344 Hydrolase_6: Haloacid 57.9 11 0.00025 27.5 2.9 38 67-113 5-42 (101)
186 TIGR01307 pgm_bpd_ind 2,3-bisp 57.2 1.5E+02 0.0032 28.6 10.8 79 151-234 91-172 (501)
187 TIGR02512 Fe_only_hydrog hydro 57.1 4.5 9.8E-05 37.2 0.7 58 49-112 71-134 (374)
188 PRK05434 phosphoglyceromutase; 56.6 1.5E+02 0.0032 28.7 10.8 80 151-235 95-177 (507)
189 COG4015 Predicted dinucleotide 55.9 14 0.00031 29.8 3.2 37 66-112 108-144 (217)
190 PF00682 HMGL-like: HMGL-like 54.7 1.3E+02 0.0028 25.3 14.4 174 48-245 10-194 (237)
191 PF05853 DUF849: Prokaryotic p 54.0 1.5E+02 0.0033 25.9 13.2 161 47-230 21-195 (272)
192 PRK11267 biopolymer transport 53.5 86 0.0019 24.4 7.4 56 47-108 79-134 (141)
193 COG2961 ComJ Protein involved 52.3 51 0.0011 28.6 6.2 48 213-261 194-247 (279)
194 PRK09389 (R)-citramalate synth 52.1 2.2E+02 0.0048 27.3 20.9 179 45-244 17-198 (488)
195 TIGR00666 PBP4 D-alanyl-D-alan 50.8 22 0.00047 32.4 4.1 30 68-97 55-84 (345)
196 PF11823 DUF3343: Protein of u 50.6 22 0.00049 24.2 3.2 55 182-237 10-66 (73)
197 cd03413 CbiK_C Anaerobic cobal 49.9 82 0.0018 23.1 6.4 56 184-240 42-98 (103)
198 TIGR01465 cobM_cbiF precorrin- 49.6 46 0.00099 28.0 5.7 55 49-111 55-109 (229)
199 PF01964 ThiC: ThiC family; I 49.0 41 0.00089 31.2 5.4 75 47-135 134-225 (420)
200 PF07894 DUF1669: Protein of u 48.5 1.4E+02 0.0031 26.4 8.6 90 154-261 135-231 (284)
201 PRK03620 5-dehydro-4-deoxygluc 48.2 92 0.002 27.7 7.6 77 182-266 86-165 (303)
202 PRK09282 pyruvate carboxylase 47.8 2.9E+02 0.0062 27.3 20.2 162 47-239 21-202 (592)
203 cd07941 DRE_TIM_LeuA3 Desulfob 47.8 1.9E+02 0.0041 25.2 20.6 181 46-244 14-207 (273)
204 TIGR00674 dapA dihydrodipicoli 47.6 1E+02 0.0022 27.0 7.7 76 182-265 78-158 (285)
205 cd07945 DRE_TIM_CMS Leptospira 47.3 2E+02 0.0043 25.3 20.7 182 46-244 13-203 (280)
206 KOG2872 Uroporphyrinogen decar 47.0 2.1E+02 0.0046 25.5 10.6 119 83-230 231-354 (359)
207 COG0329 DapA Dihydrodipicolina 46.5 2.1E+02 0.0046 25.4 12.8 131 47-191 20-156 (299)
208 PRK15473 cbiF cobalt-precorrin 46.5 62 0.0013 28.0 6.1 53 49-109 64-116 (257)
209 COG4747 ACT domain-containing 46.5 82 0.0018 24.0 5.8 75 160-236 57-132 (142)
210 PF14824 Sirohm_synth_M: Siroh 46.4 22 0.00047 20.1 2.1 16 102-117 5-20 (30)
211 PF05913 DUF871: Bacterial pro 46.4 1.3E+02 0.0027 27.7 8.3 152 50-240 12-175 (357)
212 PRK07168 bifunctional uroporph 45.5 79 0.0017 30.2 7.1 52 49-108 64-115 (474)
213 PRK12331 oxaloacetate decarbox 45.3 2.8E+02 0.006 26.4 18.9 161 47-239 21-202 (448)
214 COG0821 gcpE 1-hydroxy-2-methy 45.3 2.4E+02 0.0052 25.7 13.5 24 82-110 109-132 (361)
215 PF08576 DUF1764: Eukaryotic p 45.0 11 0.00024 27.8 1.0 12 28-39 91-102 (102)
216 PF00701 DHDPS: Dihydrodipicol 44.6 2.2E+02 0.0047 24.9 9.8 76 182-265 81-161 (289)
217 cd03028 GRX_PICOT_like Glutare 44.1 78 0.0017 22.3 5.4 66 18-88 7-83 (90)
218 COG0296 GlgB 1,4-alpha-glucan 43.6 74 0.0016 31.5 6.6 86 182-268 163-267 (628)
219 PRK11024 colicin uptake protei 42.1 1.6E+02 0.0034 22.9 7.3 55 49-109 85-139 (141)
220 PRK12677 xylose isomerase; Pro 41.8 2.9E+02 0.0062 25.6 15.2 54 47-110 29-90 (384)
221 KOG0259 Tyrosine aminotransfer 41.7 86 0.0019 29.1 6.2 69 173-248 177-246 (447)
222 PRK00915 2-isopropylmalate syn 41.2 3.4E+02 0.0073 26.2 19.7 165 46-230 20-188 (513)
223 PRK11113 D-alanyl-D-alanine ca 41.1 38 0.00082 32.4 4.2 43 69-111 100-142 (477)
224 PF01261 AP_endonuc_2: Xylose 40.8 1.4E+02 0.0031 23.9 7.3 88 153-242 27-133 (213)
225 TIGR03249 KdgD 5-dehydro-4-deo 40.8 1.6E+02 0.0035 26.0 8.0 17 80-96 23-39 (296)
226 PF07002 Copine: Copine; Inte 40.4 1.4E+02 0.0029 23.6 6.6 56 49-114 64-122 (146)
227 PF02113 Peptidase_S13: D-Ala- 40.1 52 0.0011 31.1 4.9 42 68-109 82-123 (444)
228 PLN02645 phosphoglycolate phos 39.7 60 0.0013 28.9 5.1 56 48-112 15-71 (311)
229 COG0436 Aspartate/tyrosine/aro 38.5 3.2E+02 0.007 25.2 10.0 50 183-239 150-201 (393)
230 COG0422 ThiC Thiamine biosynth 38.3 3.3E+02 0.0072 25.3 10.5 74 47-134 136-226 (432)
231 PRK03170 dihydrodipicolinate s 38.3 2E+02 0.0044 25.1 8.3 17 80-96 19-35 (292)
232 cd00951 KDGDH 5-dehydro-4-deox 38.1 1.5E+02 0.0032 26.1 7.3 17 80-96 18-34 (289)
233 COG0848 ExbD Biopolymer transp 37.8 1.8E+02 0.0039 22.7 6.8 56 48-109 78-133 (137)
234 PF06265 DUF1027: Protein of u 36.5 13 0.00027 26.6 0.2 9 29-37 74-82 (86)
235 PRK09722 allulose-6-phosphate 36.4 2.7E+02 0.0059 23.7 12.3 69 160-237 102-170 (229)
236 PF10113 Fibrillarin_2: Fibril 36.4 3.7E+02 0.0081 25.3 10.0 156 52-225 233-398 (505)
237 TIGR02801 tolR TolR protein. T 36.3 1.9E+02 0.0041 21.9 7.0 54 49-108 75-128 (129)
238 COG5016 Pyruvate/oxaloacetate 36.2 3.7E+02 0.0081 25.3 11.1 155 48-244 24-180 (472)
239 cd07937 DRE_TIM_PC_TC_5S Pyruv 36.2 2.9E+02 0.0064 24.1 17.6 79 151-238 117-196 (275)
240 PRK14041 oxaloacetate decarbox 34.7 4.2E+02 0.009 25.3 18.9 159 47-239 20-201 (467)
241 PF01207 Dus: Dihydrouridine s 34.3 3.4E+02 0.0073 24.2 12.2 83 150-240 106-189 (309)
242 PRK12313 glycogen branching en 34.0 1.6E+02 0.0034 29.2 7.4 54 186-240 173-239 (633)
243 PF06463 Mob_synth_C: Molybden 33.9 95 0.0021 23.8 4.7 26 237-262 61-86 (128)
244 PRK14057 epimerase; Provisiona 33.1 3.3E+02 0.0071 23.7 8.5 59 172-237 136-194 (254)
245 COG1105 FruK Fructose-1-phosph 33.1 3.6E+02 0.0079 24.2 13.8 107 46-168 108-216 (310)
246 PTZ00175 diphthine synthase; P 33.1 1.2E+02 0.0025 26.7 5.7 38 68-112 78-115 (270)
247 cd00408 DHDPS-like Dihydrodipi 33.0 3.1E+02 0.0068 23.7 8.5 18 79-96 14-31 (281)
248 cd03029 GRX_hybridPRX5 Glutare 32.8 55 0.0012 21.8 2.9 18 71-89 54-71 (72)
249 cd03409 Chelatase_Class_II Cla 32.4 1.8E+02 0.0039 20.5 5.9 25 184-208 45-70 (101)
250 PLN02444 HMP-P synthase 32.4 4E+02 0.0086 26.2 9.3 28 47-76 295-322 (642)
251 PRK04147 N-acetylneuraminate l 32.1 3.2E+02 0.0069 24.0 8.5 17 80-96 21-38 (293)
252 TIGR01467 cobI_cbiL precorrin- 31.8 1.1E+02 0.0024 25.7 5.3 51 53-111 78-128 (230)
253 PF00070 Pyr_redox: Pyridine n 31.7 1.7E+02 0.0036 19.8 7.1 50 186-240 11-60 (80)
254 COG3246 Uncharacterized conser 31.6 2.7E+02 0.0058 24.8 7.5 59 47-110 24-86 (298)
255 PF14701 hDGE_amylase: glucano 31.4 3.7E+02 0.0081 25.3 8.9 86 169-261 8-115 (423)
256 PRK05402 glycogen branching en 31.3 1.8E+02 0.0038 29.5 7.3 56 184-240 266-334 (726)
257 PF12674 Zn_ribbon_2: Putative 31.2 34 0.00073 24.2 1.6 30 33-63 27-56 (81)
258 TIGR01748 rhaA L-rhamnose isom 31.2 3.2E+02 0.0069 25.5 8.2 83 46-142 63-154 (414)
259 PRK00366 ispG 4-hydroxy-3-meth 31.0 4.2E+02 0.0092 24.3 16.2 39 66-110 101-139 (360)
260 cd00950 DHDPS Dihydrodipicolin 31.0 3.5E+02 0.0077 23.4 9.1 17 80-96 18-34 (284)
261 PF14871 GHL6: Hypothetical gl 31.0 1.4E+02 0.0031 23.0 5.3 70 186-261 2-79 (132)
262 PF06962 rRNA_methylase: Putat 30.7 1.6E+02 0.0034 23.2 5.4 58 151-208 68-126 (140)
263 TIGR00522 dph5 diphthine synth 30.2 1.2E+02 0.0025 26.4 5.2 38 68-112 77-114 (257)
264 COG0696 GpmI Phosphoglyceromut 30.2 4.5E+02 0.0097 25.3 9.1 75 155-234 98-175 (509)
265 PF00590 TP_methylase: Tetrapy 29.9 1E+02 0.0022 25.3 4.7 54 51-112 60-117 (210)
266 COG1647 Esterase/lipase [Gener 29.9 1.3E+02 0.0029 25.7 5.2 75 173-248 18-99 (243)
267 PLN02625 uroporphyrin-III C-me 29.8 1.6E+02 0.0035 25.5 6.1 54 50-111 77-130 (263)
268 cd04908 ACT_Bt0572_1 N-termina 29.3 53 0.0012 21.5 2.3 56 180-238 9-65 (66)
269 PRK09284 thiamine biosynthesis 29.2 4.5E+02 0.0097 25.7 9.0 28 47-76 290-317 (607)
270 PRK13398 3-deoxy-7-phosphohept 29.1 3.7E+02 0.0081 23.5 8.2 58 179-237 36-94 (266)
271 PRK14508 4-alpha-glucanotransf 28.7 83 0.0018 30.3 4.3 32 178-209 21-53 (497)
272 PRK14477 bifunctional nitrogen 28.0 5.3E+02 0.012 27.0 10.3 32 173-204 647-678 (917)
273 PRK10785 maltodextrin glucosid 27.9 1.9E+02 0.0042 28.4 6.9 57 182-239 177-244 (598)
274 cd00952 CHBPH_aldolase Trans-o 27.8 4.1E+02 0.0089 23.6 8.4 77 182-266 88-170 (309)
275 TIGR01108 oadA oxaloacetate de 27.6 6E+02 0.013 25.0 19.6 158 47-238 16-196 (582)
276 PRK05990 precorrin-2 C(20)-met 27.6 1.2E+02 0.0027 25.9 4.9 36 56-94 89-124 (241)
277 PRK05576 cobalt-precorrin-2 C( 27.5 1.6E+02 0.0035 24.8 5.6 51 53-111 78-128 (229)
278 PRK13397 3-deoxy-7-phosphohept 27.3 2.3E+02 0.0049 24.6 6.4 58 179-237 24-82 (250)
279 PF08915 tRNA-Thr_ED: Archaea- 27.2 98 0.0021 24.2 3.7 50 187-239 61-113 (138)
280 PRK14705 glycogen branching en 26.5 1.9E+02 0.0041 31.2 6.8 54 185-239 767-833 (1224)
281 COG4470 Uncharacterized protei 26.2 25 0.00053 26.3 0.2 12 29-40 86-97 (126)
282 PF00128 Alpha-amylase: Alpha 25.9 94 0.002 26.8 4.0 48 190-238 10-69 (316)
283 TIGR01515 branching_enzym alph 25.9 2.2E+02 0.0047 28.2 6.8 54 185-239 158-224 (613)
284 PRK07565 dihydroorotate dehydr 25.7 4.9E+02 0.011 23.3 10.6 87 149-240 84-171 (334)
285 PRK08745 ribulose-phosphate 3- 25.6 4.2E+02 0.009 22.5 8.8 68 160-236 104-171 (223)
286 TIGR01496 DHPS dihydropteroate 25.4 4.1E+02 0.009 23.0 7.8 78 46-134 17-105 (257)
287 PF12646 DUF3783: Domain of un 25.4 1.2E+02 0.0027 19.6 3.5 37 69-110 3-39 (58)
288 PRK11161 fumarate/nitrate redu 25.2 1.3E+02 0.0029 25.0 4.6 52 29-81 4-57 (235)
289 PF14871 GHL6: Hypothetical gl 25.1 2.5E+02 0.0054 21.6 5.7 42 51-97 2-58 (132)
290 PRK12568 glycogen branching en 25.1 2.5E+02 0.0055 28.5 7.1 56 184-240 270-338 (730)
291 COG1212 KdsB CMP-2-keto-3-deox 25.1 1.2E+02 0.0027 26.0 4.2 43 52-95 78-120 (247)
292 PRK14042 pyruvate carboxylase 25.0 6.8E+02 0.015 24.8 18.1 165 47-240 21-203 (596)
293 PRK10444 UMP phosphatase; Prov 25.0 77 0.0017 27.3 3.2 38 67-113 8-45 (248)
294 cd01427 HAD_like Haloacid deha 25.0 1.2E+02 0.0025 22.0 3.9 34 83-121 27-60 (139)
295 TIGR01428 HAD_type_II 2-haloal 24.9 74 0.0016 25.8 2.9 33 83-120 95-127 (198)
296 TIGR01662 HAD-SF-IIIA HAD-supe 24.9 78 0.0017 23.8 2.9 29 77-111 23-51 (132)
297 PRK14839 undecaprenyl pyrophos 24.8 4E+02 0.0087 23.0 7.4 43 151-194 39-82 (239)
298 PLN02635 disproportionating en 24.8 1.1E+02 0.0023 29.9 4.3 32 178-209 44-76 (538)
299 COG1625 Fe-S oxidoreductase, r 24.7 1.4E+02 0.003 27.9 4.8 30 2-42 67-96 (414)
300 cd01299 Met_dep_hydrolase_A Me 24.7 2.9E+02 0.0063 24.5 7.0 57 49-111 117-183 (342)
301 COG4464 CapC Capsular polysacc 24.6 1E+02 0.0022 26.3 3.6 18 174-191 7-24 (254)
302 COG4822 CbiK Cobalamin biosynt 24.4 4E+02 0.0087 22.8 7.0 55 183-238 178-233 (265)
303 COG0560 SerB Phosphoserine pho 24.3 98 0.0021 26.0 3.6 93 76-181 73-172 (212)
304 PRK14706 glycogen branching en 24.3 2.2E+02 0.0048 28.3 6.5 55 184-239 168-235 (639)
305 TIGR02402 trehalose_TreZ malto 24.2 2.4E+02 0.0052 27.4 6.7 56 184-240 111-179 (542)
306 PLN02746 hydroxymethylglutaryl 24.2 5.5E+02 0.012 23.4 20.4 178 45-244 61-253 (347)
307 PRK12595 bifunctional 3-deoxy- 24.2 3.3E+02 0.0072 25.0 7.2 61 176-237 124-185 (360)
308 PF09153 DUF1938: Domain of un 24.1 33 0.00071 24.3 0.5 30 66-96 23-52 (86)
309 cd03419 GRX_GRXh_1_2_like Glut 23.9 1.2E+02 0.0025 20.4 3.4 37 52-90 39-75 (82)
310 PRK07259 dihydroorotate dehydr 23.9 5E+02 0.011 22.8 10.6 86 150-240 75-163 (301)
311 TIGR01469 cobA_cysG_Cterm urop 23.9 2.1E+02 0.0046 23.9 5.7 54 50-111 62-115 (236)
312 PLN02389 biotin synthase 23.9 5.8E+02 0.013 23.5 9.1 28 78-109 114-141 (379)
313 PRK04147 N-acetylneuraminate l 23.8 5E+02 0.011 22.7 12.0 49 47-95 19-69 (293)
314 COG4868 Uncharacterized protei 23.7 5.6E+02 0.012 23.3 9.3 74 124-203 65-139 (493)
315 TIGR02313 HpaI-NOT-DapA 2,4-di 23.3 5.2E+02 0.011 22.7 9.2 17 80-96 18-34 (294)
316 COG2344 AT-rich DNA-binding pr 23.0 2.2E+02 0.0048 23.8 5.2 43 156-205 136-180 (211)
317 COG2221 DsrA Dissimilatory sul 22.7 3.9E+02 0.0085 24.1 7.1 63 169-236 30-93 (317)
318 PRK10637 cysG siroheme synthas 22.7 1.9E+02 0.0042 27.3 5.6 52 50-109 278-329 (457)
319 PF03470 zf-XS: XS zinc finger 22.7 74 0.0016 19.6 1.8 8 35-42 1-8 (43)
320 COG2759 MIS1 Formyltetrahydrof 22.6 2.8E+02 0.0061 26.5 6.3 47 153-202 357-403 (554)
321 PF06134 RhaA: L-rhamnose isom 22.6 2E+02 0.0044 26.7 5.3 130 46-195 65-209 (417)
322 TIGR00977 LeuA_rel 2-isopropyl 22.5 7.2E+02 0.016 24.1 21.1 168 45-230 16-193 (526)
323 PRK01060 endonuclease IV; Prov 22.4 2.6E+02 0.0057 24.0 6.1 19 181-199 44-62 (281)
324 cd04882 ACT_Bt0572_2 C-termina 22.2 67 0.0015 20.5 1.8 56 181-237 8-64 (65)
325 PF09345 DUF1987: Domain of un 22.1 3.2E+02 0.007 20.0 6.6 53 151-203 27-82 (99)
326 PF13793 Pribosyltran_N: N-ter 22.0 2.7E+02 0.0058 20.9 5.2 45 166-210 47-93 (116)
327 PRK12344 putative alpha-isopro 22.0 7.3E+02 0.016 24.0 19.3 175 46-238 21-205 (524)
328 cd01965 Nitrogenase_MoFe_beta_ 21.9 5.7E+02 0.012 23.8 8.6 30 175-204 160-189 (428)
329 PRK05948 precorrin-2 methyltra 21.9 2.7E+02 0.0059 23.8 5.9 28 66-95 92-119 (238)
330 TIGR01491 HAD-SF-IB-PSPlk HAD- 21.7 1.3E+02 0.0029 24.1 3.9 35 83-122 83-117 (201)
331 TIGR01656 Histidinol-ppas hist 21.4 73 0.0016 24.7 2.1 25 82-111 29-53 (147)
332 KOG2884 26S proteasome regulat 21.4 3.4E+02 0.0073 23.2 6.0 45 179-230 118-162 (259)
333 KOG2535 RNA polymerase II elon 21.4 6.5E+02 0.014 23.2 13.3 66 127-197 250-316 (554)
334 TIGR03217 4OH_2_O_val_ald 4-hy 21.3 6.1E+02 0.013 22.9 19.9 154 46-234 18-186 (333)
335 cd01320 ADA Adenosine deaminas 21.2 5.7E+02 0.012 22.5 11.1 81 153-241 112-193 (325)
336 TIGR00338 serB phosphoserine p 21.2 1.2E+02 0.0025 25.0 3.5 34 83-121 88-121 (219)
337 PF14097 SpoVAE: Stage V sporu 21.1 2.9E+02 0.0064 22.5 5.4 49 58-112 16-65 (180)
338 PTZ00445 p36-lilke protein; Pr 21.0 4.3E+02 0.0093 22.5 6.6 59 182-241 27-98 (219)
339 TIGR02434 CobF precorrin-6A sy 21.0 2.9E+02 0.0062 23.9 5.9 39 53-94 90-128 (249)
340 TIGR00676 fadh2 5,10-methylene 21.0 5.6E+02 0.012 22.3 11.7 31 47-79 68-98 (272)
341 PRK05692 hydroxymethylglutaryl 20.8 5.8E+02 0.013 22.4 20.1 176 46-245 20-212 (287)
342 PRK06136 uroporphyrin-III C-me 20.7 2.6E+02 0.0056 23.7 5.6 51 52-110 67-117 (249)
343 PRK08284 precorrin 6A synthase 20.7 3.1E+02 0.0067 23.7 6.0 27 66-94 103-129 (253)
344 TIGR01691 enolase-ppase 2,3-di 20.6 1.1E+02 0.0023 26.0 3.1 28 82-114 97-124 (220)
345 COG3589 Uncharacterized conser 20.5 6.6E+02 0.014 23.0 12.5 147 52-238 16-174 (360)
346 PRK07535 methyltetrahydrofolat 20.5 5.7E+02 0.012 22.2 14.8 55 48-110 21-78 (261)
347 COG0826 Collagenase and relate 20.4 6.1E+02 0.013 23.1 8.1 86 105-199 9-94 (347)
348 TIGR03586 PseI pseudaminic aci 20.2 6.5E+02 0.014 22.8 11.2 88 164-261 132-225 (327)
349 PRK08091 ribulose-phosphate 3- 20.2 5.5E+02 0.012 21.9 15.1 71 160-237 110-180 (228)
350 PLN02321 2-isopropylmalate syn 20.2 8.8E+02 0.019 24.2 19.2 167 47-230 103-279 (632)
351 PRK09456 ?-D-glucose-1-phospha 20.1 1E+02 0.0022 25.1 2.9 26 83-113 87-112 (199)
No 1
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=9.6e-45 Score=323.06 Aligned_cols=249 Identities=42% Similarity=0.731 Sum_probs=229.2
Q ss_pred ccccCcc-CCCCCceEEEEeccCCcCccCccccCCCCCCccCCCHHHHHHHHHHHhcc----------------CCCceE
Q 023640 8 GKYNGKP-RPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----------------SNIRNV 70 (279)
Q Consensus 8 ~~~~~~~-~p~~~~~~l~i~~~~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~----------------~~~~~I 70 (279)
|..++.+ +|...+.|+++|++.||++.|.||..+..+..+.+++.|+++++..+.+. ..+.+|
T Consensus 93 G~~IEtVli~~~~r~TlCvSSQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NI 172 (371)
T PRK14461 93 GAVVETVLMIYPDRATVCVSTQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNL 172 (371)
T ss_pred CCEEEEEEEecCCCceEEEEccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeE
Confidence 4566777 88888999999999999999999999999899999999999999865321 237899
Q ss_pred EEecCCccccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCC
Q 023640 71 VFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 149 (279)
Q Consensus 71 ~fsG~GEPll~~~~i~~~i~~~~~~-g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~ 149 (279)
+|.|+||||+|++.+.+.++.+.+. |+++...+++|+|.|..+.+.++++....+.++|||+|++++.+++++|.++.+
T Consensus 173 VfMGMGEPL~NydnV~~ai~il~d~~g~~is~R~ITVST~Givp~I~~la~~~~~v~LAiSLHA~~~e~R~~lmPin~~y 252 (371)
T PRK14461 173 VFMGMGEPFANYDRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIRRLANERLPINLAISLHAPDDALRSELMPVNRRY 252 (371)
T ss_pred EEEccCCchhhHHHHHHHHHHhcCccccCcCCCceEEEeecchhHHHHHHhcccCceEEEEeCCCCHHHHHHhcCcccCC
Confidence 9999999999999999999999875 888888999999999998899999877678899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhC------CcEEEEEecCCCCCCCCcCCCCHHHHH
Q 023640 150 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF------QVVVNLIPFNPIGSVSQFRTSSDDKVS 223 (279)
Q Consensus 150 ~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~------~~~i~l~~~~p~~~~~~~~~~~~e~l~ 223 (279)
++++++++++.+.++.+.++.++|++++|+||+.++..+|+++++.+ .++|+++||||. ++..|.+++.++++
T Consensus 253 pl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~-~~~~~~~ps~~~i~ 331 (371)
T PRK14461 253 PIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPV-PGTPLGRSERERVT 331 (371)
T ss_pred CHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCC-CCCCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999988 778999999998 56789999999999
Q ss_pred HHHHHHHhcCCeEEEeccccccccccccccccccC
Q 023640 224 SFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 258 (279)
Q Consensus 224 ~~~~~l~~~~gi~v~vr~~~g~~~~~~cg~~~~~~ 258 (279)
+|+++|+ ..|+.+.+|..+|.||.++|||...+|
T Consensus 332 ~F~~~L~-~~gi~vtiR~s~G~DI~AACGQL~~~~ 365 (371)
T PRK14461 332 TFQRILT-DYGIPCTVRVERGVEIAAACGQLAGRH 365 (371)
T ss_pred HHHHHHH-HCCceEEEeCCCCcChhhcCcccccCC
Confidence 9999999 899999999999999999999998754
No 2
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.4e-44 Score=324.23 Aligned_cols=248 Identities=44% Similarity=0.722 Sum_probs=221.9
Q ss_pred ccccCcc-CCCCCceEEEEeccCCcCccCccccCCCCCCccCCCHHHHHHHHHHHhcc---CCCceEEEecCCccccCHH
Q 023640 8 GKYNGKP-RPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---SNIRNVVFMGMGEPLNNYA 83 (279)
Q Consensus 8 ~~~~~~~-~p~~~~~~l~i~~~~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~---~~~~~I~fsG~GEPll~~~ 83 (279)
|..++.+ +|...+.|+++|++.||+++|.||+++..+..+.++.+|+++++.....+ .++.+|+|+|+||||+|++
T Consensus 85 g~~vE~V~i~~~~~~t~cvSsq~GC~l~C~FC~t~~~G~~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmGmGEPL~N~d 164 (348)
T PRK14467 85 GHTIETVLIKERDHLTLCVSSQVGCAVGCKFCATAKDGLIRNLRTAEIIDQYIQVQKFLGENRIRNVVFMGMGEPLANYE 164 (348)
T ss_pred CCEEEEEEEEeCCCcEEEEEcCCCCCCcCcCCCCCCCCCcCCCCHHHHHHHHHHHHHHhccCCCCeEEEEccChhhcCHH
Confidence 4566777 88888999999999999999999999877777899999999999876542 2478999999999999999
Q ss_pred HHHHHHHHHhC-CCCCCCCCeEEEEcCCchhhhHHHhccC--CCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHH
Q 023640 84 ALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDL--PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 160 (279)
Q Consensus 84 ~i~~~i~~~~~-~g~~~~~~~v~i~TNG~~~~~~~l~~~~--~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~ 160 (279)
++.++++.+++ .|++++..+++|+|+|+.+.+.+++... +.+++.+||++++++.|++++|.++.++++.++++++.
T Consensus 165 ~v~~~l~~l~~~~gl~~~~r~itvsT~G~~~~i~~l~~~~~l~~v~LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~ 244 (348)
T PRK14467 165 NVRKAVQIMTSPWGLDLSKRRITISTSGIIHQIKRMAEDPVMPEVNLAVSLNASSQKLRERIMPISKTNTLEELMEVLKQ 244 (348)
T ss_pred HHHHHHHHHcChhccCcCCCcEEEECCCChhHHHHHHhhccccCeeEEEECCCCCHHHHHHhcCCccccCHHHHHHHHHH
Confidence 99999999987 5877777899999999887766666543 46788899999999999999998888999999999988
Q ss_pred HHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCC--cEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEE
Q 023640 161 YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 238 (279)
Q Consensus 161 ~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~--~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~ 238 (279)
+..+.+.+++++++++||+||+++++.+++++++.++ .+++++||||. +...+++++.+++++|.++++ .+|+.+.
T Consensus 245 ~~~~~g~~V~ieyvLIpGvNDs~e~a~~La~~l~~l~~~~~VnLIPynp~-~~~~~~~ps~e~i~~f~~~L~-~~gi~v~ 322 (348)
T PRK14467 245 YPLPPGRRIMLEYVLIKGVNDSPEDALRLAQLIGKNKKKFKVNLIPFNPD-PELPYERPELERVYKFQKILW-DNGISTF 322 (348)
T ss_pred HHHhcCCeEEEEEEEECCccCCHHHHHHHHHHHhcCCCceEEEEecCCCC-CCCCCCCCCHHHHHHHHHHHH-HCCCcEE
Confidence 8888999999999999999999999999999999875 46999999998 577899999999999999999 8999999
Q ss_pred ecccccccccccccccccc
Q 023640 239 VRKQMGQDISGACGQLVVN 257 (279)
Q Consensus 239 vr~~~g~~~~~~cg~~~~~ 257 (279)
+|..+|.||.++|||...+
T Consensus 323 vR~~~G~di~aaCGqL~~~ 341 (348)
T PRK14467 323 VRWSKGVDIFGACGQLRKK 341 (348)
T ss_pred EeCCCCcchhhcccchhHh
Confidence 9999999999999998764
No 3
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=7.4e-44 Score=317.12 Aligned_cols=249 Identities=39% Similarity=0.680 Sum_probs=222.1
Q ss_pred CCCccccCccCCCCCceEEEEeccCCcCccCccccCCCCCCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHH
Q 023640 5 SSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAA 84 (279)
Q Consensus 5 ~~~~~~~~~~~p~~~~~~l~i~~~~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~ 84 (279)
.+++++.- +|.+.|.|+++|++.|||++|.||+.+..+..+.++++|+++++.......++.+|+|+|+||||++++.
T Consensus 89 g~~iEsVl--ip~~~r~t~cvSsQvGC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~~~i~nIvfmGmGEPL~N~d~ 166 (345)
T PRK14466 89 GHFVESVY--IPEEDRATLCVSSQVGCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPERDKLTNLVFMGMGEPLDNLDE 166 (345)
T ss_pred CCEEEEEE--EecCCceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhcCCCCeEEEeeeCcCcccHHH
Confidence 34444443 8888899999999999999999999987766778999999999987653335899999999999999999
Q ss_pred HHHHHHHHhCC-CCCCCCCeEEEEcCCchhhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHH
Q 023640 85 LVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 163 (279)
Q Consensus 85 i~~~i~~~~~~-g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~ 163 (279)
+.+.++.+++. |++++..+++|+|||..+.+.+++... .+.+.+|||+++++.+++++|.++.+++++++++++++.+
T Consensus 167 vi~al~~l~~~~g~~~s~r~ItVsT~G~~~~i~~l~~~~-~~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~ 245 (345)
T PRK14466 167 VLKALEILTAPYGYGWSPKRITVSTVGLKKGLKRFLEES-ECHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDF 245 (345)
T ss_pred HHHHHHHHhhccccCcCCceEEEEcCCCchHHHHHhhcc-CcEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHH
Confidence 99999988765 777778899999999877777776654 4678899999999999999999888999999999999999
Q ss_pred hhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEEecccc
Q 023640 164 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQM 243 (279)
Q Consensus 164 ~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~vr~~~ 243 (279)
+.+.++.+++++++|+||+.+++.+|+++++.++++|+++||+|. +...|.+++.+++++|.++|+ ..|+.+.+|..+
T Consensus 246 ~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np~-~~~~~~~~s~~~~~~F~~~L~-~~gi~~tvR~s~ 323 (345)
T PRK14466 246 SKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHAI-PGVDLEGSDMARMEAFRDYLT-SHGVFTTIRASR 323 (345)
T ss_pred hhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCCC-CCCCCcCCCHHHHHHHHHHHH-HCCCcEEEeCCC
Confidence 999999999999999999999999999999999989999999998 446899999999999999999 899999999999
Q ss_pred ccccccccccccccC
Q 023640 244 GQDISGACGQLVVNL 258 (279)
Q Consensus 244 g~~~~~~cg~~~~~~ 258 (279)
|.||.++|||...+-
T Consensus 324 G~dI~aACGQL~~~~ 338 (345)
T PRK14466 324 GEDIFAACGMLSTAK 338 (345)
T ss_pred CCchhhcCccchhhh
Confidence 999999999997643
No 4
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=6.1e-44 Score=321.08 Aligned_cols=247 Identities=43% Similarity=0.669 Sum_probs=222.4
Q ss_pred ccccCcc-CCCCCceEEEEeccCCcCccCccccCCCCCCccCCCHHHHHHHHHHHhcc----------CCCceEEEecCC
Q 023640 8 GKYNGKP-RPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----------SNIRNVVFMGMG 76 (279)
Q Consensus 8 ~~~~~~~-~p~~~~~~l~i~~~~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~----------~~~~~I~fsG~G 76 (279)
|..++.+ +|...+.|+++|++.||+++|.||.++..+..+.++++|+++++...... ..+.+|+|+|+|
T Consensus 107 g~~iEtV~i~~~~~~tlCvSsQvGC~m~C~FCatg~~g~~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmGmG 186 (373)
T PRK14459 107 GTLVESVLMRYPDRATLCISSQAGCGMACPFCATGQGGLTRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMGMG 186 (373)
T ss_pred CCEEEEEEEEEcCCceEEEEecCCCCCcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEecCC
Confidence 4566777 89889999999999999999999999887778899999999999865421 126789999999
Q ss_pred ccccCHHHHHHHHHHHhC---CCCCCCCCeEEEEcCCchhhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHH
Q 023640 77 EPLNNYAALVEAVRIMTG---LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 153 (279)
Q Consensus 77 EPll~~~~i~~~i~~~~~---~g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~ 153 (279)
|||+|++++.++++.+++ .|+++...+++++|+|..+.+.++++....+.+.||||+++++.|++++|.++.+++++
T Consensus 187 EPLlN~d~V~~~i~~l~~~~~~g~gis~r~ITvST~Gl~~~i~~la~~~l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ 266 (373)
T PRK14459 187 EPLANYKRVVAAVRRITAPAPEGLGISARNVTVSTVGLVPAIRKLADEGLPVTLAVSLHAPDDELRDELVPVNTRWKVDE 266 (373)
T ss_pred cchhhHHHHHHHHHHHhCcccccCCccCCEEEEECcCchhHHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCcccCCCHHH
Confidence 999999999999999987 35667778999999999888888888765567889999999999999999888899999
Q ss_pred HHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhC---CcEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHH
Q 023640 154 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 230 (279)
Q Consensus 154 i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~---~~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~ 230 (279)
++++++.+.++.|.++++++++++|+||+++++.+++++++.+ .++|+++||||.+ ...|..++.+.+++|.++|+
T Consensus 267 ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~-~~~y~~~~~~~~~~F~~~L~ 345 (373)
T PRK14459 267 VLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTP-GSKWTASPPEVEREFVRRLR 345 (373)
T ss_pred HHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEccCCCC-CCCCcCCCHHHHHHHHHHHH
Confidence 9999989988899999999999999999999999999999998 5789999999984 55788899999999999999
Q ss_pred hcCCeEEEeccccccccccccccccc
Q 023640 231 GSYNIRTTVRKQMGQDISGACGQLVV 256 (279)
Q Consensus 231 ~~~gi~v~vr~~~g~~~~~~cg~~~~ 256 (279)
..|+.+.+|..+|.||.++|||...
T Consensus 346 -~~gi~~tiR~~~G~dI~aACGQL~~ 370 (373)
T PRK14459 346 -AAGVPCTVRDTRGQEIDGACGQLAA 370 (373)
T ss_pred -HCCCeEEeeCCCCcCHhhcCCcccc
Confidence 8999999999999999999999865
No 5
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.1e-43 Score=318.52 Aligned_cols=247 Identities=41% Similarity=0.708 Sum_probs=219.8
Q ss_pred ccccCcc-CCCCCceEEEEeccCCcCccCccccCCCCCCccCCCHHHHHHHHHHHhcc--CCCceEEEecCCccccCHHH
Q 023640 8 GKYNGKP-RPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--SNIRNVVFMGMGEPLNNYAA 84 (279)
Q Consensus 8 ~~~~~~~-~p~~~~~~l~i~~~~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~--~~~~~I~fsG~GEPll~~~~ 84 (279)
|.+++.+ +|.+.|.|+|+|++.|||++|.||.++..+..+.++++|+++++...... .++.+|+|+|+||||+|+++
T Consensus 87 g~~iE~v~~~~~~r~t~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~~~~~~IvfmGmGEPlln~~~ 166 (345)
T PRK14457 87 GEIIETVGIPTEKRLTVCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQRRVSHVVFMGMGEPLLNIDE 166 (345)
T ss_pred CCEEEEEEEEcCCCCEEEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhcCCCCEEEEEecCccccCHHH
Confidence 4566667 88899999999999999999999999877667789999999999876543 25789999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhccC------CCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHH
Q 023640 85 LVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDL------PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 158 (279)
Q Consensus 85 i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~~~------~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l 158 (279)
+.++++.+++. ++++..+++++|+|..+.++++++.. ..+.+.+|||+++++.|++++|.++.++++++++++
T Consensus 167 v~~~i~~l~~~-~~i~~r~itvST~G~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~ 245 (345)
T PRK14457 167 VLAAIRCLNQD-LGIGQRRITVSTVGVPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDC 245 (345)
T ss_pred HHHHHHHHhcc-cCCccCceEEECCCchhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHH
Confidence 99999999875 33555799999999877777777653 235678999999999999999988889999999999
Q ss_pred HHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEE
Q 023640 159 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 238 (279)
Q Consensus 159 ~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~ 238 (279)
++++.+.+.+++++++++||+||+++++.+++++++.++++|+++||||.+ ...|.+++.+++++|.++++ .+|+.+.
T Consensus 246 ~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~~~VnLIPynp~~-~~~~~~ps~e~i~~f~~~L~-~~Gi~vt 323 (345)
T PRK14457 246 RHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRGFQSHVNLIPYNPID-EVEFQRPSPKRIQAFQRVLE-QRGVAVS 323 (345)
T ss_pred HHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhcCCCeEEEecCCCCC-CCCCCCCCHHHHHHHHHHHH-HCCCeEE
Confidence 999999999999999999999999999999999999998899999999984 56788999999999999999 8999999
Q ss_pred ecccccccccccccccccc
Q 023640 239 VRKQMGQDISGACGQLVVN 257 (279)
Q Consensus 239 vr~~~g~~~~~~cg~~~~~ 257 (279)
+|..+|.||.++|||...+
T Consensus 324 vR~~~G~di~aaCGqL~~~ 342 (345)
T PRK14457 324 VRASRGLDANAACGQLRRN 342 (345)
T ss_pred EeCCCCCchhhccccchhc
Confidence 9999999999999998764
No 6
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=100.00 E-value=1.4e-43 Score=319.62 Aligned_cols=252 Identities=40% Similarity=0.728 Sum_probs=222.5
Q ss_pred ccccCcc-CCCCCceEEEEeccCCcCccCccccCCCCCCccCCCHHHHHHHHHHHhc-----cCCCceEEEecCCccccC
Q 023640 8 GKYNGKP-RPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR-----LSNIRNVVFMGMGEPLNN 81 (279)
Q Consensus 8 ~~~~~~~-~p~~~~~~l~i~~~~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~-----~~~~~~I~fsG~GEPll~ 81 (279)
|..++.+ +|...+.|+++|++.|||++|.||+++..+..+.++++|+++++..... ..++..|+|+|+||||+|
T Consensus 91 g~~iE~V~i~~~~~~t~cVSsQ~GC~l~C~fC~t~~~g~~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmGmGEPLln 170 (355)
T TIGR00048 91 GQTIETVLIPEKDRATVCVSSQVGCALGCTFCATAKGGFNRNLEASEIIGQVLRVQKINNETGERVSNVVFMGMGEPLLN 170 (355)
T ss_pred CCEEEEEEEEeCCCcEEEEecCCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEecCCchhhC
Confidence 5667777 9999999999999999999999999987666788999999998876432 124678999999999999
Q ss_pred HHHHHHHHHHHhC-CCCCCCCCeEEEEcCCchhhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHH
Q 023640 82 YAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 160 (279)
Q Consensus 82 ~~~i~~~i~~~~~-~g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~ 160 (279)
++++.++++.+++ .|+++...+++|+|||..+.+.++++....+.+.+|||+++++.|++++|.++.++++.+++++++
T Consensus 171 ~d~v~~~l~~l~~~~g~~i~~~~itisT~G~~~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~ 250 (355)
T TIGR00048 171 LNEVVKAMEIMNDDFGLGISKRRITISTSGVVPKIDILADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRR 250 (355)
T ss_pred HHHHHHHHHHhhcccccCcCCCeEEEECCCchHHHHHHHHhCCCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHH
Confidence 9999999999986 466666679999999998777788776544567899999999999999998878899999999988
Q ss_pred HHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEEec
Q 023640 161 YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 240 (279)
Q Consensus 161 ~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~vr 240 (279)
++++.+.++++++++++|+||+++++.+++++++.++++++++||+|. +..++.+++.++++++.++++ ..|+.|.+|
T Consensus 251 ~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~-~~~~~~~ps~e~i~~f~~~L~-~~gi~v~iR 328 (355)
T TIGR00048 251 YLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPF-PEADYERPSNEQIDRFAKTLM-SYGFTVTIR 328 (355)
T ss_pred HHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccC-CCCCCCCCCHHHHHHHHHHHH-HCCCeEEEe
Confidence 888899999999999999999999999999999999888999999998 466788899999999999999 899999999
Q ss_pred cccccccccccccccccCcCc
Q 023640 241 KQMGQDISGACGQLVVNLPDK 261 (279)
Q Consensus 241 ~~~g~~~~~~cg~~~~~~~~~ 261 (279)
..+|.||.++|||...+.--+
T Consensus 329 ~~~G~di~aaCGqL~~~~~~~ 349 (355)
T TIGR00048 329 KSRGDDIDAACGQLRAKDVID 349 (355)
T ss_pred CCCCcchhhcCCcchhhhccc
Confidence 999999999999997754433
No 7
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=3.7e-43 Score=314.91 Aligned_cols=239 Identities=39% Similarity=0.684 Sum_probs=215.0
Q ss_pred CCCceEEEEeccCCcCccCccccCCCCCCccCCCHHHHHHHHHHHhcc-----CCCceEEEecCCccccCHHHHHHHHHH
Q 023640 17 GGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRI 91 (279)
Q Consensus 17 ~~~~~~l~i~~~~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~-----~~~~~I~fsG~GEPll~~~~i~~~i~~ 91 (279)
...|.|+++|++.||+++|.||+++..+..+.++++|+++++.....+ ..+.+|+|+|+||||+|++++.++++.
T Consensus 106 ~~~r~t~CvSsQvGC~~~C~FCatg~~g~~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmGmGEPL~N~d~v~~~l~~ 185 (356)
T PRK14462 106 EHAKYTVCVSSQVGCKVGCAFCLTAKGGFVRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMGMGEPLDNLDNVSKAIKI 185 (356)
T ss_pred cCCCceEeeeccccCCCCCccCCCCCCCCcccCCHHHHHHHHHHHHHhhhccccccCCeEEeCCcccccCHHHHHHHHHH
Confidence 347899999999999999999999877778899999999999865432 135799999889999999999999999
Q ss_pred HhCC-CCCCCCCeEEEEcCCchhhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEE
Q 023640 92 MTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 170 (279)
Q Consensus 92 ~~~~-g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~ 170 (279)
+++. |+.....+++|+|+|..+.+.+++.....+.+.+||++++++.|+.++|.+..++++.++++++.+..+.+.+++
T Consensus 186 l~~~~Gl~~~~r~itVsTsG~~~~i~~L~~~dl~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ 265 (356)
T PRK14462 186 FSENDGLAISPRRQTISTSGLASKIKKLGEMNLGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVM 265 (356)
T ss_pred hcCccCCCcCCCceEEECCCChHHHHHHHhcCCCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEE
Confidence 9995 877777899999999887777777653346677899999999999999998889999999999888888899999
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEEeccccccccccc
Q 023640 171 IEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 250 (279)
Q Consensus 171 i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~vr~~~g~~~~~~ 250 (279)
+++++++|+||+++++.+++++++.++++|+++||||. +...|++|+.+++++|.++++ .+|+.+.+|..+|.||.++
T Consensus 266 ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~-~~~~~~~ps~e~i~~f~~~l~-~~gi~vtvR~~~G~dI~aA 343 (356)
T PRK14462 266 FEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPH-EGSKFERPSLEDMIKFQDYLN-SKGLLCTIRESKGLDISAA 343 (356)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCC-CCCCCCCCCHHHHHHHHHHHH-HCCCcEEEeCCCCCchhhc
Confidence 99999999999999999999999999889999999998 567889999999999999999 8999999999999999999
Q ss_pred ccccccc
Q 023640 251 CGQLVVN 257 (279)
Q Consensus 251 cg~~~~~ 257 (279)
|||...+
T Consensus 344 CGQL~~~ 350 (356)
T PRK14462 344 CGQLREK 350 (356)
T ss_pred Cccchhh
Confidence 9999763
No 8
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=4.7e-43 Score=314.92 Aligned_cols=254 Identities=41% Similarity=0.726 Sum_probs=223.6
Q ss_pred ccccCcc-CCCCCceEEEEeccCCcCccCccccCCCCCCccCCCHHHHHHHHHHHhcc-----CCCceEEEecCCccccC
Q 023640 8 GKYNGKP-RPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNN 81 (279)
Q Consensus 8 ~~~~~~~-~p~~~~~~l~i~~~~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~-----~~~~~I~fsG~GEPll~ 81 (279)
|..++.+ +|...+.++++|++.|||++|.||..+..+..+.++++|+++++...... ..+..|+|+|+||||+|
T Consensus 79 g~~iE~V~i~~~~~~t~cvSsq~GC~l~C~fC~tg~~g~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmGEPlln 158 (343)
T PRK14468 79 GKQTEAVYMPYLDRKTICVSTMVGCPAGCAFCATGAMGFGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMGMGEPLLN 158 (343)
T ss_pred CCEEEEEEEEecCCCEEEEEecCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEeccCccccC
Confidence 4556666 88888999999999999999999999877778899999999998765332 23679999999999999
Q ss_pred HHHHHHHHHHHhC-CCCCCCCCeEEEEcCCchhhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHH
Q 023640 82 YAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 160 (279)
Q Consensus 82 ~~~i~~~i~~~~~-~g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~ 160 (279)
++++.++++.+.+ .|+++...+++++|||..+.+.++++....+.+.+|||+++++.|++++|.++.++++++++++++
T Consensus 159 ~~~v~~~i~~l~~~~g~~l~~r~itvST~G~~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~ 238 (343)
T PRK14468 159 YENVLKAARIMLHPQALAMSPRRVTLSTVGIPKGIRRLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRH 238 (343)
T ss_pred HHHHHHHHHHhcccccccccCceEEEECCCChHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHHH
Confidence 9999999998844 466666678999999987667777776544568899999999999999987777899999999988
Q ss_pred HHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEEec
Q 023640 161 YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 240 (279)
Q Consensus 161 ~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~vr 240 (279)
+.++.+.++++++++++|+||+.+++.+++++++++.++++++||+|. ...++.+++.+++++|.++++ .+|+.+.+|
T Consensus 239 ~~~~~~~~V~ieyvLI~GvNDs~e~~~~L~~ll~~~~~~VnLIPynp~-~~~~~~~ps~e~i~~f~~~L~-~~Gi~vtiR 316 (343)
T PRK14468 239 YQAVTGRRVTLEYTMLKGVNDHLWQAELLADLLRGLVSHVNLIPFNPW-EGSPFQSSPRAQILAFADVLE-RRGVPVSVR 316 (343)
T ss_pred HHHhcCCeEEEEEEEeCCCcCCHHHHHHHHHHHhcCCcEEEEEcCCCC-CCCCCCCCCHHHHHHHHHHHH-HCCCeEEEe
Confidence 888888999999999999999999999999999999888999999997 456889999999999999999 899999999
Q ss_pred cccccccccccccccccCcCccC
Q 023640 241 KQMGQDISGACGQLVVNLPDKIS 263 (279)
Q Consensus 241 ~~~g~~~~~~cg~~~~~~~~~~~ 263 (279)
..+|.||.++|||...+.|.-+.
T Consensus 317 ~~~g~di~aaCGqL~~~~~~~~~ 339 (343)
T PRK14468 317 WSRGRDVGAACGQLALKRPGALT 339 (343)
T ss_pred CCCCcchhhcCCccccCCccccc
Confidence 99999999999999998887554
No 9
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=3e-43 Score=313.93 Aligned_cols=247 Identities=38% Similarity=0.701 Sum_probs=221.9
Q ss_pred ccccCcc-CCC--CCceEEEEeccCCcCccCccccCCCCCCccCCCHHHHHHHHHHHhcc--CCCceEEEecCCccccCH
Q 023640 8 GKYNGKP-RPG--GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--SNIRNVVFMGMGEPLNNY 82 (279)
Q Consensus 8 ~~~~~~~-~p~--~~~~~l~i~~~~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~--~~~~~I~fsG~GEPll~~ 82 (279)
|..++.+ +|. +.+.|+++|++.|||++|.||+.+..+..+.++..|+++++..+... ..+.+|+|.|+||||+++
T Consensus 89 g~~iEtV~i~~~~~~~~t~CvSsQvGC~m~C~FC~tg~~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGEPL~N~ 168 (342)
T PRK14465 89 GKEFEAVWIPSGDGGRKTICISSQIGCTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGEPMHNY 168 (342)
T ss_pred CCEEEEEEeEecCCCceEEEEEecCCCCCCCCCCcCCCCCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCcchhhH
Confidence 4456666 776 46899999999999999999999888788899999999999876532 247899999999999999
Q ss_pred HHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 023640 83 AALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 161 (279)
Q Consensus 83 ~~i~~~i~~~~~~-g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~ 161 (279)
+.+.+.++.+++. ++++...+++|+|||..+.+.++.+....+.+.||||+++++.+.+++|.++.++++.++++++.+
T Consensus 169 d~V~~~~~~l~~~~~~~~~~r~itvST~G~~~~i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~ 248 (342)
T PRK14465 169 FNVIRAASILHDPDAFNLGAKRITISTSGVVNGIRRFIENKEPYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDF 248 (342)
T ss_pred HHHHHHHHHHhChhhhcCCCCeEEEeCCCchHHHHHHHhhccCceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHH
Confidence 9999999999885 777777899999999988777877654457899999999999999999988889999999999889
Q ss_pred HHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEEecc
Q 023640 162 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 241 (279)
Q Consensus 162 ~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~vr~ 241 (279)
.++.+.++++++++++|+||+++++.+++++++.++++++++||||. ..++++|+.+++++|.++|+ .+|+.+.+|.
T Consensus 249 ~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~~--~~~~~~ps~e~i~~F~~~L~-~~Gi~v~~R~ 325 (342)
T PRK14465 249 TRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNTE--FFGWRRPTDDEVAEFIMLLE-PAGVPILNRR 325 (342)
T ss_pred HHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCCC--CCCCCCCCHHHHHHHHHHHH-HCCCeEEEeC
Confidence 88899999999999999999999999999999999989999999995 46899999999999999999 8999999999
Q ss_pred cccccccccccccccc
Q 023640 242 QMGQDISGACGQLVVN 257 (279)
Q Consensus 242 ~~g~~~~~~cg~~~~~ 257 (279)
.+|.||.++|||...+
T Consensus 326 ~~G~di~aACGqL~~~ 341 (342)
T PRK14465 326 SPGKDIFGACGMLASK 341 (342)
T ss_pred CCCcChhhcCCccccC
Confidence 9999999999998653
No 10
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=6e-43 Score=312.62 Aligned_cols=247 Identities=34% Similarity=0.569 Sum_probs=217.7
Q ss_pred ccccCcc-CC-CCCceEEEEeccCCcCccCccccCCCCCCccCCCHHHHHHHHHHHhcc--CCCceEEEecCCccccCHH
Q 023640 8 GKYNGKP-RP-GGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--SNIRNVVFMGMGEPLNNYA 83 (279)
Q Consensus 8 ~~~~~~~-~p-~~~~~~l~i~~~~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~--~~~~~I~fsG~GEPll~~~ 83 (279)
|..++.+ +| ...+.|+++|++.|||++|.||+.+..+..+.+++.|+++++...... ..++.|+|+|+||||+|++
T Consensus 82 g~~iE~V~ip~~~~~~t~cvSsq~GC~l~C~fC~tg~~g~~r~l~~~EI~~qi~~~~~~~~~~i~nIvfmGmGEPllN~d 161 (336)
T PRK14470 82 GLRVEAVRIPLFDTHHVVCLSSQAGCALGCAFCATGKLGLDRSLRSWEIVAQLLAVRADSERPITGVVFMGQGEPFLNYD 161 (336)
T ss_pred CCEEEEEeccccCCCCEEEEeCCCCcCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEecCccccCHH
Confidence 4556667 88 467899999999999999999999877777888999999998865432 2578999999999999999
Q ss_pred HHHHHHHHHhCC-CCCCCCCeEEEEcCCchhhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHH
Q 023640 84 ALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 162 (279)
Q Consensus 84 ~i~~~i~~~~~~-g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~ 162 (279)
.+.++++.+++. |+++...+++|+|||..+.+.+++.....+.+.+|||+++++.|.+++|.++.++++.++++++.+.
T Consensus 162 ~v~~~i~~l~~~~~~~~~~~~ItVsTnG~~p~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~ 241 (336)
T PRK14470 162 EVLRAAYALCDPAGARIDGRRISISTAGVVPMIRRYTAEGHKFRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHA 241 (336)
T ss_pred HHHHHHHHHhCccccccCCCceEEEecCChHHHHHHHhcCCCceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHH
Confidence 999999999874 5666668999999999888778777654477999999999999999999888889999999998887
Q ss_pred HhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHH-hcCCeEEEecc
Q 023640 163 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR-GSYNIRTTVRK 241 (279)
Q Consensus 163 ~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~-~~~gi~v~vr~ 241 (279)
+. +.++++++++++|+||+++++.+++++++.+.++++++||+|.. .++.+++.+++++|+++|+ +..|+.+.+|.
T Consensus 242 ~~-~rri~ieyvLI~GvNDseeda~~La~llk~l~~~vnlI~~N~~~--~~~~~p~~~~i~~f~~~l~~~~~g~~~~~R~ 318 (336)
T PRK14470 242 AL-RGRVTLEYVMISGVNVGEEDAAALGRLLAGIPVRLNPIAVNDAT--GRYRPPDEDEWNAFRDALARELPGTPVVRRY 318 (336)
T ss_pred Hh-CCCeEEEEEEEecccCCHHHHHHHHHHHhcCCCeEEEeccCCCC--CCccCCCHHHHHHHHHHHHHccCCeEEEEEC
Confidence 66 88999999999999999999999999999988899999999963 3889999999999999994 27899999999
Q ss_pred cccccccccccccccc
Q 023640 242 QMGQDISGACGQLVVN 257 (279)
Q Consensus 242 ~~g~~~~~~cg~~~~~ 257 (279)
.+|.||.++|||...+
T Consensus 319 ~~G~di~aaCGqL~~~ 334 (336)
T PRK14470 319 SGGQDEHAACGMLASR 334 (336)
T ss_pred CCCCChHhccCccccc
Confidence 9999999999998763
No 11
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=4.2e-43 Score=314.85 Aligned_cols=249 Identities=38% Similarity=0.702 Sum_probs=221.5
Q ss_pred ccccCcc-CCCCCceEEEEeccCCcCccCccccCCCCCCccCCCHHHHHHHHHHHhccC--CCceEEEecCCccccCHHH
Q 023640 8 GKYNGKP-RPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEPLNNYAA 84 (279)
Q Consensus 8 ~~~~~~~-~p~~~~~~l~i~~~~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~~--~~~~I~fsG~GEPll~~~~ 84 (279)
|..++.+ +|...+.|+++|++.||+++|.||+++..+..+.++++|+++++.....+. .+.+|+|.|+||||+|+++
T Consensus 87 g~~iE~V~i~~~~~~t~cvSsqvGC~~~C~FC~tg~~G~~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mggGEPLln~d~ 166 (342)
T PRK14454 87 GNIIESVVMKYKHGNSICVSTQVGCRMGCKFCASTIGGMVRNLTAGEMLDQILAAQNDIGERISNIVLMGSGEPLDNYEN 166 (342)
T ss_pred CCEEEEEEEEEcCCCEEEEEcCCCCCCcCCcCCCCCCCCcccCCHHHHHHHHHHHHHHhcCCCCCEEEECCchhhcCHHH
Confidence 4556777 888889999999999999999999998777778999999999998765432 3567665444999999999
Q ss_pred HHHHHHHHhC-CCCCCCCCeEEEEcCCchhhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHH
Q 023640 85 LVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 163 (279)
Q Consensus 85 i~~~i~~~~~-~g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~ 163 (279)
+.++++.+++ .|+.++..+++|+|+|+.+.+.++++....+++.+||++++++.|+.++|.+..+.+++++++++++..
T Consensus 167 v~~~l~~l~~~~gi~~~~r~itvsTsG~~p~i~~l~~~~~~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~ 246 (342)
T PRK14454 167 VMKFLKIVNSPYGLNIGQRHITLSTCGIVPKIYELADENLQITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYIN 246 (342)
T ss_pred HHHHHHHHhcccccCcCCCceEEECcCChhHHHHHHhhcccceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 9999999997 587777789999999998887788876555778899999999999999998888999999999988888
Q ss_pred hhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEEecccc
Q 023640 164 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQM 243 (279)
Q Consensus 164 ~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~vr~~~ 243 (279)
+.+.++++++++++|+||+++++++++++++.+.+.++++||||.+ ...+++++.+++++|.++++ .+|+.+.+|..+
T Consensus 247 ~~~~rv~iey~LI~gvNDs~eda~~La~llk~l~~~VnLiPyn~~~-~~~~~~ps~e~l~~f~~~l~-~~gi~v~iR~~~ 324 (342)
T PRK14454 247 KTNRRITFEYALVKGVNDSKEDAKELGKLLKGMLCHVNLIPVNEVK-ENGFKKSSKEKIKKFKNILK-KNGIETTIRREM 324 (342)
T ss_pred HhCCEEEEEEEeECCCCCCHHHHHHHHHHHhcCCceEEEEecCCCC-CCCCCCCCHHHHHHHHHHHH-HCCCcEEEeCCC
Confidence 8999999999999999999999999999999988889999999984 56788999999999999999 899999999999
Q ss_pred ccccccccccccccC
Q 023640 244 GQDISGACGQLVVNL 258 (279)
Q Consensus 244 g~~~~~~cg~~~~~~ 258 (279)
|+||.++|||...++
T Consensus 325 G~di~aaCGQL~~~~ 339 (342)
T PRK14454 325 GSDINAACGQLRRSY 339 (342)
T ss_pred CCchhhcCcccchhh
Confidence 999999999997653
No 12
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=8.3e-43 Score=314.79 Aligned_cols=250 Identities=36% Similarity=0.702 Sum_probs=222.5
Q ss_pred ccccCcc-CCCCCceEEEEeccCCcCccCccccCCCCCCccCCCHHHHHHHHHHHhcc-----CCCceEEEecCCccccC
Q 023640 8 GKYNGKP-RPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNN 81 (279)
Q Consensus 8 ~~~~~~~-~p~~~~~~l~i~~~~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~-----~~~~~I~fsG~GEPll~ 81 (279)
|..++.+ +|...+.|+++|++.|||++|.||..+..+..+.++++|+++++...... .++..|+|+|+||||+|
T Consensus 95 g~~ie~V~~~~~~~~t~ciSsqvGC~~~C~FC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~GmGEPLln 174 (356)
T PRK14455 95 GYLIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMGIGEPFDN 174 (356)
T ss_pred CCEEEEEEEEecCCceEEEECCCCCCCCCCcCCCCCCCCCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEeccccccCC
Confidence 4566777 88888999999999999999999999877778899999999998864321 35789999999999999
Q ss_pred HHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHH
Q 023640 82 YAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 160 (279)
Q Consensus 82 ~~~i~~~i~~~~~~-g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~ 160 (279)
++++.++++.+++. |++++..+++|+|||+.+.+.++.+......+.+|+|+++++.|+.++|.++.++++.++++++.
T Consensus 175 ~~~v~~~l~~l~~~~g~~~s~r~itvsT~G~~~~i~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~ 254 (356)
T PRK14455 175 YDNVMDFLRIINDDKGLAIGARHITVSTSGIAPKIYDFADEGLQINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEY 254 (356)
T ss_pred HHHHHHHHHHHhcccCcccCCCceEEEecCchHhHHHHHhcccCeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHH
Confidence 99999999999874 76666679999999998877777776545678899999999999999998888999999999988
Q ss_pred HHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEEec
Q 023640 161 YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 240 (279)
Q Consensus 161 ~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~vr 240 (279)
+.+..+.++.+++++++|+||+.+++.+++++++.++..++++||+|.+ ...|.+++.+++.+|++++. .+|+.+.+|
T Consensus 255 ~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~~-~~ky~~ps~e~l~~f~~~L~-~~gi~v~ir 332 (356)
T PRK14455 255 YIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPVP-ERDYVRTPKEDIFAFEDTLK-KNGVNCTIR 332 (356)
T ss_pred HHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcCC-CCCCcCCCHHHHHHHHHHHH-HCCCcEEEe
Confidence 8777889999999999999999999999999999998889999999984 45788899999999999999 899999999
Q ss_pred cccccccccccccccccCc
Q 023640 241 KQMGQDISGACGQLVVNLP 259 (279)
Q Consensus 241 ~~~g~~~~~~cg~~~~~~~ 259 (279)
..+|.||.++|||...+..
T Consensus 333 ~~~g~di~aaCGqL~~~~~ 351 (356)
T PRK14455 333 REHGTDIDAACGQLRAKER 351 (356)
T ss_pred CCCCcchhhcCccchhhhh
Confidence 9999999999999987654
No 13
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=3.6e-42 Score=310.77 Aligned_cols=248 Identities=40% Similarity=0.661 Sum_probs=219.5
Q ss_pred ccccCcc-CCCCCceEEEEeccCCcCccCccccCCCCCCccCCCHHHHHHHHHHHh-------ccCCCceEEEecCCccc
Q 023640 8 GKYNGKP-RPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-------RLSNIRNVVFMGMGEPL 79 (279)
Q Consensus 8 ~~~~~~~-~p~~~~~~l~i~~~~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~-------~~~~~~~I~fsG~GEPl 79 (279)
|..++.+ +|+..+.|+++|++.|||++|.||..+..+..+.++.+|+++++..+. ...++..|.|+|+||||
T Consensus 107 g~~iEtV~i~~~~~~t~ciSsq~GCnl~C~FC~tg~~g~~rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmGmGEPL 186 (368)
T PRK14456 107 GELVETVLIPGPERMTACISSQAGCALRCSFCATGQMGFRRNLTAGEITGQVFALSDMLAERNRERGITNIVFMGMGEPL 186 (368)
T ss_pred CCEEEEEEEecCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeCcCccc
Confidence 5667777 999999999999999999999999998777778899999999885431 12357899999999999
Q ss_pred cCHHHHHHHHHHHhCC--CCCCCCCeEEEEcCCchhhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCC-CCCHHHHHH
Q 023640 80 NNYAALVEAVRIMTGL--PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAAR-AFPLEKLMN 156 (279)
Q Consensus 80 l~~~~i~~~i~~~~~~--g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~-~~~~~~i~~ 156 (279)
+|++.+.++++.+++. ++++...+++++|||..+.+.++++.+..+.+.||||+++++.|..++|.++ .++++++++
T Consensus 187 ln~d~v~~~i~~l~~~~~~~~is~r~ItisT~Gl~~~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~ 266 (368)
T PRK14456 187 LNTDNVFEAVLTLSTRKYRFSISQRKITISTVGITPEIDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELRE 266 (368)
T ss_pred cCHHHHHHHHHHHhccccccCcCcCeeEEECCCChHHHHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHH
Confidence 9988899999999875 4445557999999998877888888765467999999999999999998764 789999999
Q ss_pred HHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeE
Q 023640 157 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIR 236 (279)
Q Consensus 157 ~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~ 236 (279)
+++.+.++.+.++.+++++++|+||+++++.+++++++++.++++++||+|.+ ...|.+++.+.++.|+++|+ ..|+.
T Consensus 267 ~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~~-~~~~~~ps~e~i~~F~~~L~-~~Gi~ 344 (368)
T PRK14456 267 ALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSIV-NIKFEPVCSSTRERFRDRLL-DAGLQ 344 (368)
T ss_pred HHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccCC-CCCCCCCCHHHHHHHHHHHH-HCCCc
Confidence 99888888899999999999999999999999999999988899999999985 45788899999999999999 89999
Q ss_pred EEecccccccccccccccccc
Q 023640 237 TTVRKQMGQDISGACGQLVVN 257 (279)
Q Consensus 237 v~vr~~~g~~~~~~cg~~~~~ 257 (279)
|.+|..+|.||.++|||...+
T Consensus 345 vtvR~~~G~di~aACGQL~~~ 365 (368)
T PRK14456 345 VTVRKSYGTTINAACGQLAAR 365 (368)
T ss_pred EEeeCCCCcchhhcCCcchhc
Confidence 999999999999999998753
No 14
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=5.3e-42 Score=308.53 Aligned_cols=247 Identities=42% Similarity=0.704 Sum_probs=220.5
Q ss_pred ccccCcc-CCCCCceEEEEeccCCcCccCccccCCCCCCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHH
Q 023640 8 GKYNGKP-RPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALV 86 (279)
Q Consensus 8 ~~~~~~~-~p~~~~~~l~i~~~~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ 86 (279)
|..++.+ +|...+.++++|++.|||++|.||..+..+..+.++++|+++++..+....+++.|+|+|+||||++++.+.
T Consensus 89 g~~iE~V~~~~~~~~t~cvSsq~GC~~~C~FC~tg~~~~~r~lt~~EI~~qv~~~~~~~~i~~IvfmG~GEPl~n~~~vi 168 (349)
T PRK14463 89 GNAVESVLIPDEDRNTLCISSQVGCAMGCAFCLTGTFRLTRNLTTAEIVNQVCAVKRDVPVRNIVFMGMGEPLANLDNVI 168 (349)
T ss_pred CCeEEEEEEEecCCcEEEEEecCCcCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCccEEEEecCCcchhcHHHHH
Confidence 4556666 888889999999999999999999987666678899999999998765444689999999999999999999
Q ss_pred HHHHHHhC-CCCCCCCCeEEEEcCCchhhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhh
Q 023640 87 EAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 165 (279)
Q Consensus 87 ~~i~~~~~-~g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~ 165 (279)
++++.+++ .|++++..++.|+|||+.+.+.++.... .+.+.||+|+++++.++.++|.++.+++++++++++.+....
T Consensus 169 ~~l~~l~~~~gl~~s~r~itVsTnGl~~~i~~l~~~~-~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~ 247 (349)
T PRK14463 169 PALQILTDPDGLQFSTRKVTVSTSGLVPEMEELGREV-TVNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPG 247 (349)
T ss_pred HHHHHhhcccccCcCCceEEEECCCchHHHHHHhhcc-CeEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhc
Confidence 99999986 5777778899999999887666665543 356779999999999999999888899999999998888788
Q ss_pred CCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEEecccccc
Q 023640 166 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 245 (279)
Q Consensus 166 ~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~vr~~~g~ 245 (279)
+.++++++++++|+||+++++.+++++++++++.++++||||.+ ..++++|+.+++++|.++++ .+|+.+.+|..+|.
T Consensus 248 ~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~~-~~~~~~ps~e~i~~f~~~L~-~~gi~v~vR~~~G~ 325 (349)
T PRK14463 248 RRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEHE-GCDFRSPTQEAIDRFHKYLL-DKHVTVITRSSRGS 325 (349)
T ss_pred CCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCCC-CCCCCCCCHHHHHHHHHHHH-HCCceEEEeCCCCc
Confidence 89999999999999999999999999999998899999999984 57889999999999999999 89999999999999
Q ss_pred cccccccccccc
Q 023640 246 DISGACGQLVVN 257 (279)
Q Consensus 246 ~~~~~cg~~~~~ 257 (279)
||.++|||...+
T Consensus 326 di~aaCGqL~~~ 337 (349)
T PRK14463 326 DISAACGQLKGK 337 (349)
T ss_pred chhhccCccccc
Confidence 999999999763
No 15
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=100.00 E-value=4.6e-42 Score=308.15 Aligned_cols=248 Identities=41% Similarity=0.711 Sum_probs=219.2
Q ss_pred ccccCcc-CCCCCc-eEEEEeccCCcCccCccccCCCCCCccCCCHHHHHHHHHHHhcc-CCCceEEEecCCccccCHHH
Q 023640 8 GKYNGKP-RPGGPR-STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-SNIRNVVFMGMGEPLNNYAA 84 (279)
Q Consensus 8 ~~~~~~~-~p~~~~-~~l~i~~~~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~-~~~~~I~fsG~GEPll~~~~ 84 (279)
|..++.+ +|...+ .|+++|++.|||++|.||.++..+..+.++.+|+++++...... .++.+|+|+|+||||+|+ .
T Consensus 85 g~~iE~V~i~~~~~~~t~CvssqvGC~~~C~FC~tg~~g~~rnLt~~EIv~qv~~~~~~~~~i~~IvfmGmGEPLln~-~ 163 (347)
T PRK14453 85 GERIEAVGLKYKQGWESFCISSQCGCGFGCRFCATGSIGLKRNLTADEITDQLLYFYLNGHRLDSISFMGMGEALANP-E 163 (347)
T ss_pred CCEEEEEEEeecCCceeEEEecCCCcCCCCCCCCCCCCCCcccCCHHHHHHHHHHHHhcCCCcceEEEeecCCccCCH-H
Confidence 4566777 888775 89999999999999999999988788899999999999865432 237899999999999995 5
Q ss_pred HHHHHHHHhCC-CCCCCCCeEEEEcCCchhhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHH
Q 023640 85 LVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 163 (279)
Q Consensus 85 i~~~i~~~~~~-g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~ 163 (279)
+.++++.+++. +++++..+++|+|+|..+.++++.+..+.+++.+|+++++++.|+++++.++.+.++++++++++++.
T Consensus 164 v~~~i~~l~~~~~~~~~~r~itVsT~G~~~~i~~l~~~~~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~ 243 (347)
T PRK14453 164 LFDALKILTDPNLFGLSQRRITISTIGIIPGIQRLTQEFPQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIR 243 (347)
T ss_pred HHHHHHHHhcccccCCCCCcEEEECCCCchhHHHHHhhccCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHH
Confidence 88999988874 56666788999999988767788887777899999999999999999998888999999999999988
Q ss_pred hhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhC-----CcEEEEEecCCCCC-CCCcCCCCHHHHHHHHHHHHhcCCeEE
Q 023640 164 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF-----QVVVNLIPFNPIGS-VSQFRTSSDDKVSSFQKILRGSYNIRT 237 (279)
Q Consensus 164 ~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~-----~~~i~l~~~~p~~~-~~~~~~~~~e~l~~~~~~l~~~~gi~v 237 (279)
+.+.++.+++++++|+||+.+++.+++++++.+ ...|+++||||.+. ..++++++.++++.|.++++ ..|+.+
T Consensus 244 ~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~-~~Gi~v 322 (347)
T PRK14453 244 HTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLK-SAGISV 322 (347)
T ss_pred hcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHH-HCCCcE
Confidence 889999999999999999999999999999987 35699999999863 22588899999999999999 899999
Q ss_pred Eecccccccccccccccccc
Q 023640 238 TVRKQMGQDISGACGQLVVN 257 (279)
Q Consensus 238 ~vr~~~g~~~~~~cg~~~~~ 257 (279)
.+|..+|.||.++|||...+
T Consensus 323 tiR~~~G~di~aaCGqL~~~ 342 (347)
T PRK14453 323 TVRTQFGSDISAACGQLYGN 342 (347)
T ss_pred EEeCCCCCchhhccccchhh
Confidence 99999999999999999764
No 16
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.3e-41 Score=307.02 Aligned_cols=248 Identities=40% Similarity=0.678 Sum_probs=215.3
Q ss_pred ccccCcc-CCCCCceEEEEeccCCcCccCccccCCCCCCccCCCHHHHHHHHHHHhc--cCCCceEEEecCCccccCHHH
Q 023640 8 GKYNGKP-RPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR--LSNIRNVVFMGMGEPLNNYAA 84 (279)
Q Consensus 8 ~~~~~~~-~p~~~~~~l~i~~~~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~--~~~~~~I~fsG~GEPll~~~~ 84 (279)
|..++.+ +|...+.|+++|++.|||++|.||+++..+..+.++++|+++++..... ..++.+|+|+|+||||+|+++
T Consensus 87 g~~ie~v~~~~~~~~t~cissq~GC~l~C~fC~tg~~g~~r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~GmGEPLln~d~ 166 (343)
T PRK14469 87 GNTIESVMLFHPDRITACISTQVGCPVKCIFCATGQSGFVRNLTTGEIVSQILAMEKEEKKKVGNVVYMGMGEPLLNYEN 166 (343)
T ss_pred CCEEEEEEEecCCCeEEEEEecCCCCCcCcCCCCCCCCccccCCHHHHHHHHHHHHHhccCCcCeEEEEccChhhhhHHH
Confidence 4455666 8888899999999999999999999987666778999999999876432 135789999999999999999
Q ss_pred HHHHHHHHhCC-CCCCCCCeEEEEcCCchhhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHH
Q 023640 85 LVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 163 (279)
Q Consensus 85 i~~~i~~~~~~-g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~ 163 (279)
+.++++.+++. |.+++..+++++|||+...+.++++.+..+.+.||+|+++++.|+.++|.++.++++.++++++.+.+
T Consensus 167 v~~~i~~l~~~~~~~~g~~~itisTnG~~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~ 246 (343)
T PRK14469 167 VIKSIKILNHKKMKNIGIRRITISTVGIPEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQK 246 (343)
T ss_pred HHHHHHHHhchhcccCCCCeEEEECCCChHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHH
Confidence 99999999764 33343458999999986667788876544568899999999999999887778899999999988877
Q ss_pred hhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEEecccc
Q 023640 164 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQM 243 (279)
Q Consensus 164 ~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~vr~~~ 243 (279)
..+.++.+++++++|+||+.+++.+++++++.+++.++++||+|.. ..+.+++.+++++|.++++ .+|+.+.+|..+
T Consensus 247 ~~~~~v~i~yvlI~g~NDs~ed~~~La~llk~~~~~VnLIpynp~~--~~~~~ps~e~l~~f~~~l~-~~gi~vtvr~~~ 323 (343)
T PRK14469 247 KTGNRVTIEYILIKGFNDEIEDAKKLAELLKGLKVFVNLIPVNPTV--PGLEKPSRERIERFKEILL-KNGIEAEIRREK 323 (343)
T ss_pred HhCCeEEEEEEEECCCCCCHHHHHHHHHHHhccCcEEEEEecCCCC--ccCCCCCHHHHHHHHHHHH-HCCCeEEEeCCC
Confidence 7788999999999999999999999999999998889999999974 3688899999999999999 899999999999
Q ss_pred ccccccccccccccC
Q 023640 244 GQDISGACGQLVVNL 258 (279)
Q Consensus 244 g~~~~~~cg~~~~~~ 258 (279)
|.||.++|||...+.
T Consensus 324 g~di~aaCGqL~~~~ 338 (343)
T PRK14469 324 GSDIEAACGQLRRRN 338 (343)
T ss_pred CcchhhcCccchhhh
Confidence 999999999998764
No 17
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=9.4e-42 Score=307.48 Aligned_cols=250 Identities=42% Similarity=0.712 Sum_probs=219.9
Q ss_pred ccccCcc-CCCCC-ceEEEEeccCCcCccCccccCCCCCCccCCCHHHHHHHHHHHhcc-----CC---CceEEEecCCc
Q 023640 8 GKYNGKP-RPGGP-RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SN---IRNVVFMGMGE 77 (279)
Q Consensus 8 ~~~~~~~-~p~~~-~~~l~i~~~~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~-----~~---~~~I~fsG~GE 77 (279)
|..++.+ +|... +.++++|++.|||++|.||+.+..+..+.++++|+++++.....+ .+ ++.|+|+|+||
T Consensus 87 g~~iE~V~~p~~~~r~t~CvSsq~GC~~~C~FC~tg~~g~~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGE 166 (354)
T PRK14460 87 GALVETVLIPSKSRRYTQCLSCQVGCAMGCTFCSTGTMGFERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGMGE 166 (354)
T ss_pred CCEEEEEEeEcCCCceeEEeeCCCCcCCCCccCCCCCCCCCcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecCCc
Confidence 4556666 88877 899999999999999999999877778899999999999643221 12 68999999999
Q ss_pred cccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHH
Q 023640 78 PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 156 (279)
Q Consensus 78 Pll~~~~i~~~i~~~~~~-g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~ 156 (279)
||+|++++.++++.+++. |+.++..+++|+|||+.+.++++.+.. .+.+.||||+++++.|+.+++.++.++++++++
T Consensus 167 PLln~~~v~~~l~~l~~~~Gl~~~~r~itvsT~G~~~~i~~L~~~~-l~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~ 245 (354)
T PRK14460 167 PLLNLDEVMRSLRTLNNEKGLNFSPRRITVSTCGIEKGLRELGESG-LAFLAVSLHAPNQELRERIMPKAARWPLDDLIA 245 (354)
T ss_pred ccCCHHHHHHHHHHHhhhhccCCCCCeEEEECCCChHHHHHHHhCC-CcEEEEeCCCCCHHHHHHhcCccccCCHHHHHH
Confidence 999999999999999875 776667899999999866666777654 367889999999999999999877789999999
Q ss_pred HHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeE
Q 023640 157 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIR 236 (279)
Q Consensus 157 ~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~ 236 (279)
+++.+..+.+.++++++++++|+||+++++.+++++++.++..|+++||||. .+..|++++.++++++.++++ ..|+.
T Consensus 246 al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~~~~~VnLIpyn~~-~g~~y~~p~~e~v~~f~~~l~-~~Gi~ 323 (354)
T PRK14460 246 ALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSRTKCKLNLIVYNPA-EGLPYSAPTEERILAFEKYLW-SKGIT 323 (354)
T ss_pred HHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCC-CCCCCCCCCHHHHHHHHHHHH-HCCCe
Confidence 9988888888999999999999999999999999999999888999999998 567888999999999999999 89999
Q ss_pred EEeccccccccccccccccccCcC
Q 023640 237 TTVRKQMGQDISGACGQLVVNLPD 260 (279)
Q Consensus 237 v~vr~~~g~~~~~~cg~~~~~~~~ 260 (279)
+.+|..+|.||.++|||...+.-+
T Consensus 324 vtir~~~G~di~aaCGqL~~~~~~ 347 (354)
T PRK14460 324 AIIRKSKGQDIKAACGQLKAEELG 347 (354)
T ss_pred EEEeCCCCCchHhccccchhhhhh
Confidence 999999999999999999876443
No 18
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.7e-41 Score=306.26 Aligned_cols=249 Identities=41% Similarity=0.730 Sum_probs=219.6
Q ss_pred cccCcc-CCCCCceEEEEeccCCcCccCccccCCCCCCccCCCHHHHHHHHHHHhcc---------CCCceEEEecCCcc
Q 023640 9 KYNGKP-RPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SNIRNVVFMGMGEP 78 (279)
Q Consensus 9 ~~~~~~-~p~~~~~~l~i~~~~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~---------~~~~~I~fsG~GEP 78 (279)
..++.+ +|.+.+.|+++|++.||+++|.||+++..+..+.++.+|+++++.....+ ..+.+|+|.|+|||
T Consensus 90 ~~iEsV~~~~~~~~t~CvSsQvGC~~~C~FC~t~~~g~~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mGmGEP 169 (372)
T PRK11194 90 QRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEP 169 (372)
T ss_pred CeEEEEEEEcCCCeeEEEecCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEecCCcc
Confidence 345666 88889999999999999999999999877778899999999998765432 13788999999999
Q ss_pred ccCHHHHHHHHHHHhC-CCCCCCCCeEEEEcCCchhhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHH
Q 023640 79 LNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 157 (279)
Q Consensus 79 ll~~~~i~~~i~~~~~-~g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~ 157 (279)
|+|++++.++++.+++ .|+++...+++|+|+|..+.+.++++.. .+.+.+|+++++++.|++++|.++.++.+.++++
T Consensus 170 L~N~d~v~~al~~l~~~~g~~i~~r~itVsTsG~~~~i~~l~~~~-d~~LaiSLha~d~e~R~~lmPin~~~~l~~ll~a 248 (372)
T PRK11194 170 LLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMI-DVALAISLHAPNDELRDEIVPINKKYNIETFLAA 248 (372)
T ss_pred ccCHHHHHHHHHHHhhhhccCcCCCeEEEECCCCchHHHHHHhcc-CeEEEeeccCCCHHHHHHhcCCcccccHHHHHHH
Confidence 9999999999999985 4777767799999999888777887654 3556789999999999999998888899999999
Q ss_pred HHHHHHhhC---CeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCC
Q 023640 158 LKEYQKNSQ---QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN 234 (279)
Q Consensus 158 l~~~~~~~~---~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g 234 (279)
++++..+.+ .+++++++++||+||+++++.+++++++.++++|+++||||.+ ...|++++.+++++|.++++ .+|
T Consensus 249 ~~~y~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l~~~VnLIPYN~~~-~~~~~~ps~e~v~~f~~~L~-~~G 326 (372)
T PRK11194 249 VRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFP-GAPYGRSSNSRIDRFSKVLM-EYG 326 (372)
T ss_pred HHHHHHhcccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcCCceEEEecCCCCC-CCCCCCCCHHHHHHHHHHHH-HCC
Confidence 989988774 7899999999999999999999999999988889999999984 56788999999999999999 899
Q ss_pred eEEEeccccccccccccccccccCcC
Q 023640 235 IRTTVRKQMGQDISGACGQLVVNLPD 260 (279)
Q Consensus 235 i~v~vr~~~g~~~~~~cg~~~~~~~~ 260 (279)
+.+.+|..+|.||.++|||...+.-+
T Consensus 327 i~vtiR~~~G~di~aaCGQL~~~~~~ 352 (372)
T PRK11194 327 FTVIVRKTRGDDIDAACGQLAGDVID 352 (372)
T ss_pred CeEEEecCCCCcchhcCcCcHhhhhh
Confidence 99999999999999999999886633
No 19
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=100.00 E-value=8.9e-41 Score=293.70 Aligned_cols=250 Identities=46% Similarity=0.772 Sum_probs=227.9
Q ss_pred ccCcc-CCCCCceEEEEeccCCcCccCccccCCCCCCccCCCHHHHHHHHHHHhcc------CCCceEEEecCCccccCH
Q 023640 10 YNGKP-RPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL------SNIRNVVFMGMGEPLNNY 82 (279)
Q Consensus 10 ~~~~~-~p~~~~~~l~i~~~~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~------~~~~~I~fsG~GEPll~~ 82 (279)
.++.+ +|...+.|+++|++.||++.|.||..+..+..+.++..|++.++..+.+. ..+.+|+|.|+|||++|+
T Consensus 89 ~iEtV~ip~~~r~tlCVSsQvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl~N~ 168 (349)
T COG0820 89 MIETVLIPEKDRNTLCVSSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPLLNL 168 (349)
T ss_pred EEEEEEEEecCCceEEEecCCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCchhhhH
Confidence 34556 89999999999999999999999999988889999999999999875421 136899999999999999
Q ss_pred HHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 023640 83 AALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 161 (279)
Q Consensus 83 ~~i~~~i~~~~~~-g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~ 161 (279)
+.+..+++.+.+. |+++...++++.|+|..+.+.++++....+.++|||++++++.++.++|.++.++.+.++++++.+
T Consensus 169 dnV~~a~~i~~~~~G~~ls~R~iTvSTsGi~~~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y 248 (349)
T COG0820 169 DNVVKALEIINDDEGLGLSKRRITVSTSGIVPRIRKLADEQLGVALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYY 248 (349)
T ss_pred HHHHHHHHhhcCcccccccceEEEEecCCCchhHHHHHhhcCCeEEEEecCCCCHHHHhhhhccccCCCHHHHHHHHHhh
Confidence 9999999999854 888888999999999988888888654467888999999999999999999999999999999999
Q ss_pred HHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEEecc
Q 023640 162 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 241 (279)
Q Consensus 162 ~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~vr~ 241 (279)
....+.++.++|++++++||+.++..+|++++..+.++|+++||+|. +..+|..++.+++..|.+.|. .+|+.+.+|.
T Consensus 249 ~~~t~~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~Np~-~~~~y~r~~~~~i~~F~~~L~-~~gv~~tvR~ 326 (349)
T COG0820 249 PEKSGRRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNPV-PGSDYERSSKERIRKFLKILK-KAGVLVTVRK 326 (349)
T ss_pred hhccCceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecCCC-CCCCccCCcHHHHHHHHHHHH-hCCeeEEecc
Confidence 88889999999999999999999999999999999889999999999 677799999999999999999 8999999999
Q ss_pred ccccccccccccccccCcCc
Q 023640 242 QMGQDISGACGQLVVNLPDK 261 (279)
Q Consensus 242 ~~g~~~~~~cg~~~~~~~~~ 261 (279)
.+|+||.++|||.+.+..+.
T Consensus 327 ~~g~DIdaACGQL~~~~~~~ 346 (349)
T COG0820 327 TRGDDIDAACGQLRGKRIKR 346 (349)
T ss_pred ccccccccccchhhhhhchh
Confidence 99999999999999877543
No 20
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=3.6e-40 Score=293.72 Aligned_cols=244 Identities=33% Similarity=0.594 Sum_probs=217.0
Q ss_pred ccccCcc-CCCCCceEEEEeccCCcCccCccccCCCCCCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHH
Q 023640 8 GKYNGKP-RPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALV 86 (279)
Q Consensus 8 ~~~~~~~-~p~~~~~~l~i~~~~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ 86 (279)
|..++.+ +|. .|+++|++.||+++|.||..+..+..+.++++|+++++..+.....++.|+|+|+||||++++.+.
T Consensus 85 g~~iEtV~i~~---~t~CvSsQvGC~~~C~FC~tg~~g~~RnLs~~EI~~Qv~~~~~~~~i~nIVfmGmGEPl~N~d~vl 161 (344)
T PRK14464 85 GQMVESVLLPR---DGLCVSTQVGCAVGCVFCMTGRSGLLRQLGSAEIVAQVVLARRRRAVKKVVFMGMGEPAHNLDNVL 161 (344)
T ss_pred CCEEEEEEecC---CcEEEEccCCcCCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCcccCCHHHHH
Confidence 5566677 775 489999999999999999998777778899999999999876555689999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhC
Q 023640 87 EAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 166 (279)
Q Consensus 87 ~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~ 166 (279)
+.++.+.+. .+++..+++|+|-|..+...++........+.+|||+++++.++.++|.++.+++++++++++++.+..|
T Consensus 162 ~ai~~l~~~-~~i~~r~itiST~G~~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~~g 240 (344)
T PRK14464 162 EAIDLLGTE-GGIGHKNLVFSTVGDPRVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARATG 240 (344)
T ss_pred HHHHHhhch-hcCCCceEEEecccCchHHHHHHHhcCChHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHHHC
Confidence 999888765 2445688999999987767777765434567789999999999999999989999999999999988899
Q ss_pred CeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEEeccccccc
Q 023640 167 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQD 246 (279)
Q Consensus 167 ~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~vr~~~g~~ 246 (279)
.++.+++++++|+||+.+++.+|++++..+.++++++||+|. ++..+..++.+++++|.+.|+ ..|+.+.+|..+|.|
T Consensus 241 rri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v-~g~~~~rp~~~~i~~f~~~L~-~~gi~~tiR~~~G~d 318 (344)
T PRK14464 241 YPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSV-DGDAYRRPSGERIVAMARYLH-RRGVLTKVRNSAGQD 318 (344)
T ss_pred CEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCcc-CCCCccCCCHHHHHHHHHHHH-HCCceEEEECCCCCc
Confidence 999999999999999999999999999988889999999998 567888899999999999999 899999999999999
Q ss_pred ccccccccccc
Q 023640 247 ISGACGQLVVN 257 (279)
Q Consensus 247 ~~~~cg~~~~~ 257 (279)
|.++|||...+
T Consensus 319 i~aACGqL~~~ 329 (344)
T PRK14464 319 VDGGCGQLRAR 329 (344)
T ss_pred hhhcCcchhhh
Confidence 99999999764
No 21
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.98 E-value=9.9e-31 Score=226.58 Aligned_cols=206 Identities=18% Similarity=0.353 Sum_probs=162.7
Q ss_pred CCCceEEEEeccCCcCccCccccCCCC---CCccCCCHHHHHHHHHHHhcc--CCCceEEEecCCccccCHHHHHHHHHH
Q 023640 17 GGPRSTLCISSQVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRL--SNIRNVVFMGMGEPLNNYAALVEAVRI 91 (279)
Q Consensus 17 ~~~~~~l~i~~~~gCNl~C~yC~~~~~---~~~~~~~~~ei~~~i~~~~~~--~~~~~I~fsG~GEPll~~~~i~~~i~~ 91 (279)
.+.|.++|+ .|||++|.||+++.. ...+.++++++++++.+.... .....|+|+| ||||++++.+.++++.
T Consensus 19 ~g~~~~~f~---~gCnl~C~~C~~~~~~~~~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sG-GEPll~~~~~~~l~~~ 94 (246)
T PRK11145 19 PGIRFITFF---QGCLMRCLYCHNRDTWDTHGGKEVTVEELMKEVVTYRHFMNASGGGVTASG-GEAILQAEFVRDWFRA 94 (246)
T ss_pred CCeEEEEEE---CCCCCcCCCCCCHHHCCCCCCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeC-ccHhcCHHHHHHHHHH
Confidence 358888888 899999999998542 234678999999988865432 1235899999 9999998888899999
Q ss_pred HhCCCCCCCCCeEEEEcCCchhh-hHHHhccCCCce-EEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeE
Q 023640 92 MTGLPFQVSPKRITVSTVGIVHA-INKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI 169 (279)
Q Consensus 92 ~~~~g~~~~~~~v~i~TNG~~~~-~~~l~~~~~~~~-i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v 169 (279)
+++.| .++.+.|||+++. .+.+......+| +.||+|+.+++.|+.+++. +.+.+++++ +.+.+.+.++
T Consensus 95 ~k~~g-----~~i~l~TNG~~~~~~~~~~~ll~~~d~v~islk~~~~e~~~~~~g~----~~~~~l~~i-~~l~~~g~~v 164 (246)
T PRK11145 95 CKKEG-----IHTCLDTNGFVRRYDPVIDELLDVTDLVMLDLKQMNDEIHQNLVGV----SNHRTLEFA-RYLAKRNQKT 164 (246)
T ss_pred HHHcC-----CCEEEECCCCCCcchHHHHHHHHhCCEEEECCCcCChhhcccccCC----ChHHHHHHH-HHHHhCCCcE
Confidence 99988 6799999998642 122222222345 6799999999999988653 457889988 5566788999
Q ss_pred EEEEEEeCCCCCcHHHHHHHHHHHhhCC-c-EEEEEecCCCCC-----------CCCcCCCCHHHHHHHHHHHHhcCCeE
Q 023640 170 FIEYIMLDGVNDEEQHAHQLGKLLETFQ-V-VVNLIPFNPIGS-----------VSQFRTSSDDKVSSFQKILRGSYNIR 236 (279)
Q Consensus 170 ~i~~vv~~g~nd~~~~l~~l~~~l~~~~-~-~i~l~~~~p~~~-----------~~~~~~~~~e~l~~~~~~l~~~~gi~ 236 (279)
.+++++++|+||++++++++++++++++ + .++++||+|.+. ..++++++.++++++.++++ ++|++
T Consensus 165 ~i~~~li~g~nd~~~ei~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~-~~g~~ 243 (246)
T PRK11145 165 WIRYVVVPGWTDDDDSAHRLGEFIKDMGNIEKIELLPYHELGKHKWEAMGEEYKLDGVKPPSKETMERVKGILE-QYGHK 243 (246)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCcceEEEecCCccchhHHHHcCCcccccCCCCCCHHHHHHHHHHHH-HcCCc
Confidence 9999999999999999999999999875 3 488999998641 23467889999999999999 78876
Q ss_pred E
Q 023640 237 T 237 (279)
Q Consensus 237 v 237 (279)
+
T Consensus 244 ~ 244 (246)
T PRK11145 244 V 244 (246)
T ss_pred c
Confidence 4
No 22
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.1e-29 Score=218.80 Aligned_cols=204 Identities=17% Similarity=0.340 Sum_probs=160.5
Q ss_pred CCCCCceEEEEeccCCcCccCccccCCCCCC-ccCCCHHHHHHHHHH-Hhcc-CCCceEEEecCCccccCHHHHHHHHHH
Q 023640 15 RPGGPRSTLCISSQVGCKMGCNFCATGTMGF-KSNLSSGEIVEQLVH-ASRL-SNIRNVVFMGMGEPLNNYAALVEAVRI 91 (279)
Q Consensus 15 ~p~~~~~~l~i~~~~gCNl~C~yC~~~~~~~-~~~~~~~ei~~~i~~-~~~~-~~~~~I~fsG~GEPll~~~~i~~~i~~ 91 (279)
.|+..++++|+ +||||+|.||+||.... .+..+.+++..++.. .... .+.+.|+||| |||+++++++.++++.
T Consensus 32 ~~g~~~~~vf~---~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~gvt~SG-GEP~~q~e~~~~~~~~ 107 (260)
T COG1180 32 GPGSIRLSVFL---QGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAFYSESGGGVTFSG-GEPTLQAEFALDLLRA 107 (260)
T ss_pred CCCcEEEEEEe---CCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhhhcCCCCEEEEEC-CcchhhHHHHHHHHHH
Confidence 34467888888 99999999999986544 244455555433332 2222 2578999999 9999999999999999
Q ss_pred HhCCCCCCCCCeEEEEcCCchhh--hHHHhccCCCce-EEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCe
Q 023640 92 MTGLPFQVSPKRITVSTVGIVHA--INKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 168 (279)
Q Consensus 92 ~~~~g~~~~~~~v~i~TNG~~~~--~~~l~~~~~~~~-i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~ 168 (279)
+++.| .++.+.|||+... .+++.+. .| +.++|++.+++.|+.+++ .+.+.+++++ +++.+.|+.
T Consensus 108 ake~G-----l~~~l~TnG~~~~~~~~~l~~~---~D~v~~DlK~~~~~~y~~~tg----~~~~~vl~~~-~~l~~~g~~ 174 (260)
T COG1180 108 AKERG-----LHVALDTNGFLPPEALEELLPL---LDAVLLDLKAFDDELYRKLTG----ADNEPVLENL-ELLADLGVH 174 (260)
T ss_pred HHHCC-----CcEEEEcCCCCCHHHHHHHHhh---cCeEEEeeccCChHHHHHHhC----CCcHHHHHHH-HHHHcCCCe
Confidence 99999 7999999998754 2233332 45 568999999998998864 3459999999 667779999
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE--EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeE
Q 023640 169 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIR 236 (279)
Q Consensus 169 v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~--i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~ 236 (279)
++++++++||++|+++++.++++++++++.. +++.+|+|.+..++.++...++++++.+..+ +.+.+
T Consensus 175 ve~r~lviPg~~d~~e~i~~i~~~i~~~~~~~p~~~l~fhp~~~~~~~p~~~~~~le~~~~~a~-~~~~~ 243 (260)
T COG1180 175 VEIRTLVIPGYNDDEEEIRELAEFIADLGPEIPIHLLRFHPDYKLKDLPPTPVETLEEAKKLAK-EEGLK 243 (260)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHhcCCcccEEEeccccCccccccCCCcHHHHHHhHhhhH-HHHHH
Confidence 9999999999999999999999999986543 8999999987666656677888888888877 55543
No 23
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.96 E-value=1.3e-27 Score=205.63 Aligned_cols=203 Identities=17% Similarity=0.352 Sum_probs=158.2
Q ss_pred CccCCCCCceEEEEeccCCcCccCccccCCCC---CCccCCCHHHHHHHHHHHhccC--CCceEEEecCCccccCHHHHH
Q 023640 12 GKPRPGGPRSTLCISSQVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEPLNNYAALV 86 (279)
Q Consensus 12 ~~~~p~~~~~~l~i~~~~gCNl~C~yC~~~~~---~~~~~~~~~ei~~~i~~~~~~~--~~~~I~fsG~GEPll~~~~i~ 86 (279)
+.+-+.+.+.+++. .|||++|.||+++.. .....++++++++.+.+..... ....|+|+| ||||++++.+.
T Consensus 9 ~~~~g~g~~~~v~~---~gCnl~C~~C~~~~~~~~~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~G-GEPll~~~~~~ 84 (235)
T TIGR02493 9 GTVDGPGIRFVVFM---QGCPLRCQYCHNPDTWDLKGGTEVTPEELIKEVGSYKDFFKASGGGVTFSG-GEPLLQPEFLS 84 (235)
T ss_pred cccCCCCceEEEEE---CCCCCcCCCCCChhhccCCCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeC-cccccCHHHHH
Confidence 33334456767666 899999999998532 2235689999998888765321 125799999 99999988788
Q ss_pred HHHHHHhCCCCCCCCCeEEEEcCCchh--h--hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHH
Q 023640 87 EAVRIMTGLPFQVSPKRITVSTVGIVH--A--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 162 (279)
Q Consensus 87 ~~i~~~~~~g~~~~~~~v~i~TNG~~~--~--~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~ 162 (279)
++++.+++.| ..+.+.|||++. . ..++.+. ...+.||+++.+++.|+.+++ .+++.+++++ +.+
T Consensus 85 ~li~~~~~~g-----~~~~i~TNG~~~~~~~~~~~ll~~--~d~v~isl~~~~~~~~~~~~g----~~~~~v~~~i-~~l 152 (235)
T TIGR02493 85 ELFKACKELG-----IHTCLDTSGFLGGCTEAADELLEY--TDLVLLDIKHFNPEKYKKLTG----VSLQPTLDFA-KYL 152 (235)
T ss_pred HHHHHHHHCC-----CCEEEEcCCCCCccHHHHHHHHHh--CCEEEEeCCCCCHHHHHHHHC----CCcHHHHHHH-HHH
Confidence 9999999987 579999999643 1 3334332 123679999999999988753 2688999999 566
Q ss_pred HhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCc-E-EEEEecCCCC-----------CCCCcCCCCHHHHHHHHHHH
Q 023640 163 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-V-VNLIPFNPIG-----------SVSQFRTSSDDKVSSFQKIL 229 (279)
Q Consensus 163 ~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~-~-i~l~~~~p~~-----------~~~~~~~~~~e~l~~~~~~l 229 (279)
++.+..+.++++++++++++.+++.++++++.+++. . +.++||+|.+ +..++++++.++++++.+++
T Consensus 153 ~~~g~~~~v~~vv~~~~~~n~~ei~~l~~~~~~l~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (235)
T TIGR02493 153 AKRNKPIWIRYVLVPGYTDSEEDIEALAEFVKTLPNVERVEVLPYHQLGVYKWEALGIEYPLEGVKPPNKEQLERAAEIF 232 (235)
T ss_pred HhCCCcEEEEEeeeCCcCCCHHHHHHHHHHHHhCCCCceEEecCCCcccHHHHHHcCCcCccCCCCCCCHHHHHHHHHHH
Confidence 778888999999999999999999999999999984 3 8899999864 23456789999999999988
Q ss_pred H
Q 023640 230 R 230 (279)
Q Consensus 230 ~ 230 (279)
+
T Consensus 233 ~ 233 (235)
T TIGR02493 233 K 233 (235)
T ss_pred h
Confidence 7
No 24
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=99.95 E-value=1.7e-26 Score=202.74 Aligned_cols=228 Identities=18% Similarity=0.275 Sum_probs=171.8
Q ss_pred EEEEeccCCcCccCccccCCC-CCC---ccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCC
Q 023640 22 TLCISSQVGCKMGCNFCATGT-MGF---KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPF 97 (279)
Q Consensus 22 ~l~i~~~~gCNl~C~yC~~~~-~~~---~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~ 97 (279)
.+-+|+|..|||+|.||+... ... ...++++|+...+..+.. .|++.|-+|| |||+|. +++.++++.+++.++
T Consensus 12 ~LRiSvTdrCNfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~-~Gv~kvRlTG-GEPllR-~dl~eIi~~l~~~~~ 88 (322)
T COG2896 12 YLRISVTDRCNFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAE-LGVEKVRLTG-GEPLLR-KDLDEIIARLARLGI 88 (322)
T ss_pred eEEEEEecCcCCcccccCCCCCcccCcccccCCHHHHHHHHHHHHH-cCcceEEEeC-CCchhh-cCHHHHHHHHhhccc
Confidence 456677899999999998743 222 237899999998887776 5899999999 999997 778999999988643
Q ss_pred CCCCCeEEEEcCCchhh--hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCC-eEEEEEE
Q 023640 98 QVSPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ-KIFIEYI 174 (279)
Q Consensus 98 ~~~~~~v~i~TNG~~~~--~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~-~v~i~~v 174 (279)
..++++|||+++. ..+|.+.+ ...|.||+|+.+++.+++|++. ..+++++++++ .+.+.|. ++.+++|
T Consensus 89 ----~~islTTNG~~L~~~a~~Lk~AG-l~rVNVSLDsld~e~f~~IT~~---~~~~~Vl~GI~-~A~~~Gl~pVKlN~V 159 (322)
T COG2896 89 ----RDLSLTTNGVLLARRAADLKEAG-LDRVNVSLDSLDPEKFRKITGR---DRLDRVLEGID-AAVEAGLTPVKLNTV 159 (322)
T ss_pred ----ceEEEecchhhHHHHHHHHHHcC-CcEEEeecccCCHHHHHHHhCC---CcHHHHHHHHH-HHHHcCCCceEEEEE
Confidence 6899999998754 44566665 4678999999999999999753 45999999994 5566776 5999999
Q ss_pred EeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcC---CCCHHHHHHHHHH-HH------hcCCe---------
Q 023640 175 MLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR---TSSDDKVSSFQKI-LR------GSYNI--------- 235 (279)
Q Consensus 175 v~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~~~~~---~~~~e~l~~~~~~-l~------~~~gi--------- 235 (279)
+++|+|| .++.++++|+++.+..+.++.|+|.+....+. ..+.+++.+..+. .. ...+-
T Consensus 160 v~kgvNd--~ei~~l~e~~~~~~~~lrfIE~m~~g~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~~~~~~~ 237 (322)
T COG2896 160 LMKGVND--DEIEDLLEFAKERGAQLRFIELMPLGEGNSWRLDKYLSLDEILRKLEERATLLPVRKRLHGRAKYFIHPDG 237 (322)
T ss_pred EecCCCH--HHHHHHHHHHhhcCCceEEEEEeecCcccchhhhccccHHHHHHHHHhhccccccccccCCCceEEEeCCC
Confidence 9999876 57999999999999999999999987422121 2344444443332 10 00111
Q ss_pred -EEEeccccccccccccccccccCcCccC
Q 023640 236 -RTTVRKQMGQDISGACGQLVVNLPDKIS 263 (279)
Q Consensus 236 -~v~vr~~~g~~~~~~cg~~~~~~~~~~~ 263 (279)
.+.+-.++.++.|+.|...+.+.+.|+-
T Consensus 238 ~~ig~I~p~~~~FC~~CnR~Rlt~dGkl~ 266 (322)
T COG2896 238 GEIGFIAPVSNPFCATCNRLRLTADGKLK 266 (322)
T ss_pred cEEEEEcCCCchhhhhcceeeeccCCeEE
Confidence 3333344566789999999999988763
No 25
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.95 E-value=2.4e-26 Score=213.31 Aligned_cols=201 Identities=15% Similarity=0.309 Sum_probs=154.3
Q ss_pred EEEeccCCcCccCccccCCC-------CC-CccCCCHHHHHHHHHHHhcc-CCCceEEEecCCccccCHHHHHHHHHHHh
Q 023640 23 LCISSQVGCKMGCNFCATGT-------MG-FKSNLSSGEIVEQLVHASRL-SNIRNVVFMGMGEPLNNYAALVEAVRIMT 93 (279)
Q Consensus 23 l~i~~~~gCNl~C~yC~~~~-------~~-~~~~~~~~ei~~~i~~~~~~-~~~~~I~fsG~GEPll~~~~i~~~i~~~~ 93 (279)
+.+.++.+||++|.||++.. .+ ..+.++++++++.+.+.... .++..|+|+|+||||++++++.+.++.++
T Consensus 26 ~~~~vt~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~e~~~~~l~~~~ 105 (442)
T TIGR01290 26 MHLAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIPQLSVVGIAGPGDPLANIGKTFQTLELVA 105 (442)
T ss_pred EEEecCCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCcccCccccHHHHHHHH
Confidence 44455799999999999742 11 23579999999999887643 35688999999999999888889999888
Q ss_pred CCCCCCCCCeEEEEcCCchhh--hHHHhccCCCceEEEEeCCCCHHHHhhhcCC----CC---CC-----CHHHHHHHHH
Q 023640 94 GLPFQVSPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPA----AR---AF-----PLEKLMNALK 159 (279)
Q Consensus 94 ~~g~~~~~~~v~i~TNG~~~~--~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~----~~---~~-----~~~~i~~~l~ 159 (279)
+.. +.++++|+|||+++. ++++++.+ ...+.||||+.+++.|+.+++- ++ +. .+++++++++
T Consensus 106 ~~~---~~i~i~lsTNG~~l~e~i~~L~~~g-vd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~ 181 (442)
T TIGR01290 106 RQL---PDVKLCLSTNGLMLPEHVDRLVDLG-VGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLE 181 (442)
T ss_pred Hhc---CCCeEEEECCCCCCHHHHHHHHHCC-CCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHH
Confidence 761 127899999998532 45555543 2357799999999999876421 11 11 2677789994
Q ss_pred HHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCC-CC-----CcCCCCHHHHHHHHHHHH
Q 023640 160 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGS-VS-----QFRTSSDDKVSSFQKILR 230 (279)
Q Consensus 160 ~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~-~~-----~~~~~~~e~l~~~~~~l~ 230 (279)
.+.+.|..+.++++++||+|| +++.+++++++++++. ++++||+|.+. +. +.+.++.++++.+++.++
T Consensus 182 -~l~~~G~~v~v~~vlIpGiND--~~i~~l~~~~~~lg~~~~nl~p~~~~p~~G~~~~~~~~~~ps~e~l~~~~~~~~ 256 (442)
T TIGR01290 182 -KLTERGILVKVNSVLIPGIND--EHLVEVSKQVKELGAFLHNVMPLISAPEHGTVYGLNGQREPDPDELAALRDRLE 256 (442)
T ss_pred -HHHhCCCeEEEEEEeeCCcCH--HHHHHHHHHHHhCCCcEEEeecCCCccccCCccCcCCCCCcCHHHHHHHHHHHH
Confidence 456778999999999999988 6899999999999875 88999997631 22 337789999999999887
No 26
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=99.95 E-value=2.3e-26 Score=193.82 Aligned_cols=182 Identities=13% Similarity=0.181 Sum_probs=151.3
Q ss_pred CccCCCHHHHHHHHHHHhccC--CCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhccC
Q 023640 45 FKSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDL 122 (279)
Q Consensus 45 ~~~~~~~~ei~~~i~~~~~~~--~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~~~ 122 (279)
.+..++++++++.+.+...+. +-.+|+||| |||+++++++.++++.+++.| +++.+.|||+.+. +.+.+..
T Consensus 15 ~g~~~t~eel~~~~~~~~~f~~~sggGVt~SG-GEPllq~~fl~~l~~~~k~~g-----i~~~leTnG~~~~-~~~~~l~ 87 (213)
T PRK10076 15 IGRDITLDALEREVMKDDIFFRTSGGGVTLSG-GEVLMQAEFATRFLQRLRLWG-----VSCAIETAGDAPA-SKLLPLA 87 (213)
T ss_pred cCcccCHHHHHHHHHhhhHhhcCCCCEEEEeC-chHHcCHHHHHHHHHHHHHcC-----CCEEEECCCCCCH-HHHHHHH
Confidence 356799999999998765443 236899999 999999999999999999998 7999999998763 2333333
Q ss_pred CCceE-EEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-E
Q 023640 123 PGLNL-AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-V 200 (279)
Q Consensus 123 ~~~~i-~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i 200 (279)
+.+|. .+++++.+++.|+++++ .+.+.+++++ +++.+.+..+.++++++||+||+++++++++++++++++. +
T Consensus 88 ~~~D~~l~DiK~~d~~~~~~~tG----~~~~~il~nl-~~l~~~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~l~~~~~ 162 (213)
T PRK10076 88 KLCDEVLFDLKIMDATQARDVVK----MNLPRVLENL-RLLVSEGVNVIPRLPLIPGFTLSRENMQQALDVLIPLGIKQI 162 (213)
T ss_pred HhcCEEEEeeccCCHHHHHHHHC----CCHHHHHHHH-HHHHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 34564 48999999999999864 5689999999 5667788999999999999999999999999999998775 9
Q ss_pred EEEecCCCCC-----------CCCcCCCCHHHHHHHHHHHHhcCCeEEEe
Q 023640 201 NLIPFNPIGS-----------VSQFRTSSDDKVSSFQKILRGSYNIRTTV 239 (279)
Q Consensus 201 ~l~~~~p~~~-----------~~~~~~~~~e~l~~~~~~l~~~~gi~v~v 239 (279)
+++||+|.|. ..+.++++.++++++.++++ +.|+++.+
T Consensus 163 ~llpyh~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~-~~gl~~~i 211 (213)
T PRK10076 163 HLLPFHQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAE-RAGFQVTV 211 (213)
T ss_pred EEecCCccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHH-HcCCeEEe
Confidence 9999999652 33456789999999999999 78988765
No 27
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=99.95 E-value=1e-25 Score=201.33 Aligned_cols=219 Identities=20% Similarity=0.205 Sum_probs=163.6
Q ss_pred CCcCccCccccCCCCC-------CccCCCHHHHHHHHHHHhc-----cCC--------------CceEEEecCCccccCH
Q 023640 29 VGCKMGCNFCATGTMG-------FKSNLSSGEIVEQLVHASR-----LSN--------------IRNVVFMGMGEPLNNY 82 (279)
Q Consensus 29 ~gCNl~C~yC~~~~~~-------~~~~~~~~ei~~~i~~~~~-----~~~--------------~~~I~fsG~GEPll~~ 82 (279)
.|||++|.||+++... .....+++++++.+.+... +.| .+.++|||.|||||+
T Consensus 66 ~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl~GEPlL~- 144 (322)
T PRK13762 66 AWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISLSGEPTLY- 144 (322)
T ss_pred HHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeCCccccch-
Confidence 4599999999985322 2457889999999876421 112 457999977999997
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEEcCCchhh-hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 023640 83 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 161 (279)
Q Consensus 83 ~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~-~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~ 161 (279)
+++.++++.+++.| +.+.|.|||++++ ++++ ... ...+.||||+++++.|++++++....+++.+++++ +.
T Consensus 145 p~l~eli~~~k~~G-----i~~~L~TNG~~~e~l~~L-~~~-~d~i~VSLda~~~e~~~~i~~~~~~~~~~~vl~~L-~~ 216 (322)
T PRK13762 145 PYLPELIEEFHKRG-----FTTFLVTNGTRPDVLEKL-EEE-PTQLYVSLDAPDEETYKKINRPVIPDAWERILETL-EL 216 (322)
T ss_pred hhHHHHHHHHHHcC-----CCEEEECCCCCHHHHHHH-Hhc-CCEEEEEccCCCHHHHHHHhCCCCCCcHHHHHHHH-HH
Confidence 57999999999998 6899999998764 3334 322 35678999999999999997642346899999999 56
Q ss_pred HHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCC----CcCCCCHHHHHHHHHHHHhcCCeE
Q 023640 162 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVS----QFRTSSDDKVSSFQKILRGSYNIR 236 (279)
Q Consensus 162 ~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~----~~~~~~~e~l~~~~~~l~~~~gi~ 236 (279)
+.+.+.++.+++++++|+||++.+ +++++++++++. +.+.+|++.|... ....++.+++.++.+.+.+..++.
T Consensus 217 l~~~~~~~~ir~tlv~g~Nd~e~~--~~a~l~~~~~~~~Iel~~y~~~G~~k~~l~~~~~p~~eev~~~~~~l~~~~~~~ 294 (322)
T PRK13762 217 LPSKKTRTVIRITLVKGYNMHDPE--GFAKLIERANPDFVEVKAYMHVGYSRNRLTRDNMPSHEEVREFAKELAEYTGYE 294 (322)
T ss_pred HHhCCCCEEEEEEEECCcCccHHH--HHHHHHHHcCCCEEEEECCeECCCccccccccCCcCHHHHHHHHHHHHHhcCCe
Confidence 677788999999999999987654 999999998875 8999999987432 123579999999999998333544
Q ss_pred EEeccccccccccccccccccCcCccCC
Q 023640 237 TTVRKQMGQDISGACGQLVVNLPDKISA 264 (279)
Q Consensus 237 v~vr~~~g~~~~~~cg~~~~~~~~~~~~ 264 (279)
+.. +...+|...+.....+|.-
T Consensus 295 i~~------~~~~s~~~ll~~~~~~~~~ 316 (322)
T PRK13762 295 ILD------ESEPSRVVLLSRDDRPIDP 316 (322)
T ss_pred EEe------cCCCceEEEEeecCCcccc
Confidence 222 2235666666554444443
No 28
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=99.95 E-value=3.1e-26 Score=203.56 Aligned_cols=204 Identities=18% Similarity=0.346 Sum_probs=158.5
Q ss_pred CCCCCceEEEEeccCCcCccCccccCCCCCC-------------------------------------------------
Q 023640 15 RPGGPRSTLCISSQVGCKMGCNFCATGTMGF------------------------------------------------- 45 (279)
Q Consensus 15 ~p~~~~~~l~i~~~~gCNl~C~yC~~~~~~~------------------------------------------------- 45 (279)
..++.|.++|+ +|||++|.||.++....
T Consensus 11 ~g~g~r~~~f~---~gc~~~C~~c~~p~~~~~~~~~~~~~~~C~~C~~C~~~Cp~~a~~~~~~~~~~~~~~~~~~~C~~C 87 (295)
T TIGR02494 11 DGPGIRTTVFL---KGCPLRCKWCSNPESQRKSPELLFKENRCLGCGKCVEVCPAGTARLSELADGRNRIIIRREKCTHC 87 (295)
T ss_pred CCCCchhHHHh---hcCCccCcccCCccccCCCceEEEccccCCCCchhhhhCcccccccccccCCCcceeechhhcCch
Confidence 45689999999 89999999998852110
Q ss_pred ---------------ccCCCHHHHHHHHHHHhccC--CCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEc
Q 023640 46 ---------------KSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVST 108 (279)
Q Consensus 46 ---------------~~~~~~~ei~~~i~~~~~~~--~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~T 108 (279)
++.++.+++++.+.+...+. ....|+|+| ||||++++.+.++++++++.| ..+.+.|
T Consensus 88 g~C~~~CP~~Ai~~~g~~~t~eel~~~i~~~~~~~~~~~~~V~~sG-GEPll~~~~l~~l~~~~k~~g-----~~~~i~T 161 (295)
T TIGR02494 88 GKCTEACPSGALSIVGEEMTVEEVMRVVLRDSIFYRNSGGGVTLSG-GEPLLQPEFALALLQACHERG-----IHTAVET 161 (295)
T ss_pred hHhhccCcHhHHhhhccCCcHHHHHHHHHHHHHhcccCCCcEEeeC-cchhchHHHHHHHHHHHHHcC-----CcEeeeC
Confidence 12356777777776543221 346899999 999999887789999999988 6899999
Q ss_pred CCchhhhHHHhccCCCceE-EEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHH
Q 023640 109 VGIVHAINKFHSDLPGLNL-AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAH 187 (279)
Q Consensus 109 NG~~~~~~~l~~~~~~~~i-~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~ 187 (279)
||++.. +.+.+.....++ .+|+|+.+++.|+++++ .+++.++++++ .+.+.+.++.+++++++++||+.+++.
T Consensus 162 nG~~~~-~~~~~ll~~~d~~~isl~~~~~~~~~~~~g----~~~~~vl~~i~-~l~~~~~~~~i~~~~v~~~n~~~~ei~ 235 (295)
T TIGR02494 162 SGFTPW-ETIEKVLPYVDLFLFDIKHLDDERHKEVTG----VDNEPILENLE-ALAAAGKNVVIRIPVIPGFNDSEENIE 235 (295)
T ss_pred CCCCCH-HHHHHHHhhCCEEEEeeccCChHHHHHHhC----CChHHHHHHHH-HHHhCCCcEEEEeceeCCcCCCHHHHH
Confidence 998653 223322223454 58999999999998864 36799999994 566778899999999999999999999
Q ss_pred HHHHHHhhCC--c-EEEEEecCCCCC-----------CCCcCCCCHHHHHHHHHHHHhcCC
Q 023640 188 QLGKLLETFQ--V-VVNLIPFNPIGS-----------VSQFRTSSDDKVSSFQKILRGSYN 234 (279)
Q Consensus 188 ~l~~~l~~~~--~-~i~l~~~~p~~~-----------~~~~~~~~~e~l~~~~~~l~~~~g 234 (279)
++++++.+++ + .+++++|+|.|. ..+++.++.++++++.++++ ..|
T Consensus 236 ~l~~~~~~~~~~v~~v~l~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~g 295 (295)
T TIGR02494 236 AIAAFLRKLEPGVDEIDLLPYHRLGENKYRQLGREYPDSEIPDPAEEQLLELKEIFE-SKG 295 (295)
T ss_pred HHHHHHHHhccCCceEEecCCCchhHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHH-hcC
Confidence 9999999987 4 489999999762 22345689999999998887 443
No 29
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.94 E-value=4.2e-25 Score=199.00 Aligned_cols=228 Identities=18% Similarity=0.252 Sum_probs=165.5
Q ss_pred EEEEeccCCcCccCccccCCCC---CCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCC
Q 023640 22 TLCISSQVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQ 98 (279)
Q Consensus 22 ~l~i~~~~gCNl~C~yC~~~~~---~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~ 98 (279)
.+.+++|.+||++|.||+.... .....++.+++...+.++.. .++..|.|+| ||||++ +.+.++++.+++.+.
T Consensus 15 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~ls~eei~~li~~~~~-~Gv~~I~~tG-GEPllr-~dl~~li~~i~~~~~- 90 (329)
T PRK13361 15 YLRLSVTDRCDFRCVYCMSEDPCFLPRDQVLSLEELAWLAQAFTE-LGVRKIRLTG-GEPLVR-RGCDQLVARLGKLPG- 90 (329)
T ss_pred eEEEEecCCccccCCCCCCCCCCcCCccCCCCHHHHHHHHHHHHH-CCCCEEEEEC-cCCCcc-ccHHHHHHHHHhCCC-
Confidence 5667788999999999987432 12356899999888877665 4789999999 999998 568899999988741
Q ss_pred CCCCeEEEEcCCchhh--hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCC-eEEEEEEE
Q 023640 99 VSPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ-KIFIEYIM 175 (279)
Q Consensus 99 ~~~~~v~i~TNG~~~~--~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~-~v~i~~vv 175 (279)
+ ..+.++|||++.. ...+.+.+ ...+.||+|+.+++.|+.+++ .++++++++++ +.+++.|. .+.+++++
T Consensus 91 l--~~i~itTNG~ll~~~~~~L~~aG-l~~v~ISlDs~~~e~~~~i~~---~g~~~~vl~~i-~~~~~~Gi~~v~in~v~ 163 (329)
T PRK13361 91 L--EELSLTTNGSRLARFAAELADAG-LKRLNISLDTLRPELFAALTR---NGRLERVIAGI-DAAKAAGFERIKLNAVI 163 (329)
T ss_pred C--ceEEEEeChhHHHHHHHHHHHcC-CCeEEEEeccCCHHHhhhhcC---CCCHHHHHHHH-HHHHHcCCCceEEEEEE
Confidence 1 2799999998654 33455543 345889999999999999864 36899999999 55667787 79999999
Q ss_pred eCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCc---CCCCHHHHHHHHHHH-H-----hc-CCe----------
Q 023640 176 LDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF---RTSSDDKVSSFQKIL-R-----GS-YNI---------- 235 (279)
Q Consensus 176 ~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~~~~---~~~~~e~l~~~~~~l-~-----~~-~gi---------- 235 (279)
+++.|+ +++.++++++.++++.+.++.+.|.+....+ ...+.+++.+..+.. . .. .|-
T Consensus 164 ~~g~N~--~ei~~~~~~~~~~gi~~~~ie~mP~g~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (329)
T PRK13361 164 LRGQND--DEVLDLVEFCRERGLDIAFIEEMPLGEIDERRRARHCSSDEVRAIIETRYPLTPSNKRTGGPARYYTMADSP 241 (329)
T ss_pred ECCCCH--HHHHHHHHHHHhcCCeEEEEecccCCCccchhhccCcCHHHHHHHHHHhCCcccCCCCCCCCCeEEEECCCC
Confidence 988764 6899999999999998888889998743321 234566654443322 1 00 111
Q ss_pred -EEEeccccccccccccccccccCcCcc
Q 023640 236 -RTTVRKQMGQDISGACGQLVVNLPDKI 262 (279)
Q Consensus 236 -~v~vr~~~g~~~~~~cg~~~~~~~~~~ 262 (279)
.+-+-.......|..|+.++.+.--|+
T Consensus 242 ~~ig~I~~~s~~fC~~Cnr~rlt~~G~l 269 (329)
T PRK13361 242 IHIGFISPHSHNFCHECNRVRVTAEGQL 269 (329)
T ss_pred eEEEEEcCCCccccccCCeEEEccCCcE
Confidence 122223345567899999988876554
No 30
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.94 E-value=2.1e-25 Score=201.27 Aligned_cols=176 Identities=20% Similarity=0.276 Sum_probs=141.9
Q ss_pred EEEEeccCCcCccCccccCCCC----CCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCC-C
Q 023640 22 TLCISSQVGCKMGCNFCATGTM----GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-P 96 (279)
Q Consensus 22 ~l~i~~~~gCNl~C~yC~~~~~----~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~-g 96 (279)
.+.+++|.+||++|.||+.+.. .....++.+++.+.+...... ++..|.|+| ||||++ +.+.++++.+++. +
T Consensus 18 ~l~i~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~-gi~~I~~tG-GEPll~-~~l~~li~~i~~~~~ 94 (331)
T PRK00164 18 YLRISVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIERLVRAFVAL-GVRKVRLTG-GEPLLR-KDLEDIIAALAALPG 94 (331)
T ss_pred eEEEEEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHHHHHHHHHC-CCCEEEEEC-CCCcCc-cCHHHHHHHHHhcCC
Confidence 6778889999999999988641 234678999999888776553 789999999 999998 5578999999876 3
Q ss_pred CCCCCCeEEEEcCCchhh--hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCC-eEEEEE
Q 023640 97 FQVSPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ-KIFIEY 173 (279)
Q Consensus 97 ~~~~~~~v~i~TNG~~~~--~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~-~v~i~~ 173 (279)
...+.++|||++.. ..++.+.+ ...+.||+|+.+++.+..+++ ..++++++++++ .+.+.|. .+.+++
T Consensus 95 ----~~~i~itTNG~ll~~~~~~L~~ag-l~~i~ISlds~~~e~~~~i~~---~~~~~~vl~~i~-~~~~~g~~~v~i~~ 165 (331)
T PRK00164 95 ----IRDLALTTNGYLLARRAAALKDAG-LDRVNVSLDSLDPERFKAITG---RDRLDQVLAGID-AALAAGLTPVKVNA 165 (331)
T ss_pred ----CceEEEEcCchhHHHHHHHHHHcC-CCEEEEEeccCCHHHhccCCC---CCCHHHHHHHHH-HHHHCCCCcEEEEE
Confidence 25899999997643 33455544 356889999999999998854 368999999995 4566776 899999
Q ss_pred EEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCCC
Q 023640 174 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSV 211 (279)
Q Consensus 174 vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~ 211 (279)
++++|.|+ +++.++++++.++++.+++++|+|.+..
T Consensus 166 vv~~g~n~--~ei~~l~~~~~~~gv~v~~ie~~p~~~~ 201 (331)
T PRK00164 166 VLMKGVND--DEIPDLLEWAKDRGIQLRFIELMPTGEG 201 (331)
T ss_pred EEECCCCH--HHHHHHHHHHHhCCCeEEEEEeeECCCC
Confidence 99998766 6899999999999998888988887643
No 31
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=99.94 E-value=6.3e-25 Score=190.44 Aligned_cols=216 Identities=21% Similarity=0.260 Sum_probs=162.6
Q ss_pred CCCCccccCcc-CCCCCceEEEEeccCCcCccCccccCCCCCC-----ccCCCHHHHHHHHHHHhcc-----CCCceEEE
Q 023640 4 DSSLGKYNGKP-RPGGPRSTLCISSQVGCKMGCNFCATGTMGF-----KSNLSSGEIVEQLVHASRL-----SNIRNVVF 72 (279)
Q Consensus 4 ~~~~~~~~~~~-~p~~~~~~l~i~~~~gCNl~C~yC~~~~~~~-----~~~~~~~ei~~~i~~~~~~-----~~~~~I~f 72 (279)
++|+|-|.|.. .|.. ..||++|.||+.+.... ...+.++.+.+.+.....+ ..++.|+|
T Consensus 16 srryG~slgi~~tP~~----------~~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vti 85 (296)
T COG0731 16 SRRYGISLGIQMTPSK----------KWCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTI 85 (296)
T ss_pred ccccccccCCccccch----------hhhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEE
Confidence 46677777733 5544 47999999999964322 2346677788888776654 26799999
Q ss_pred ecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHH
Q 023640 73 MGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLE 152 (279)
Q Consensus 73 sG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~ 152 (279)
+|.|||||+ ..+-++++.+|+.|. ..+.|.|||++++..+-+. ....+.+|+||++++.++++.++.....++
T Consensus 86 s~~GEPTLy-~~L~elI~~~k~~g~----~~tflvTNgslpdv~~~L~--~~dql~~sLdA~~~~~~~~InRP~~~~~~e 158 (296)
T COG0731 86 SLSGEPTLY-PNLGELIEEIKKRGK----KTTFLVTNGSLPDVLEELK--LPDQLYVSLDAPDEKTFRRINRPHKKDSWE 158 (296)
T ss_pred eCCCCcccc-cCHHHHHHHHHhcCC----ceEEEEeCCChHHHHHHhc--cCCEEEEEeccCCHHHHHHhcCCCCcchHH
Confidence 999999996 679999999999972 4899999999865322222 134577999999999999999887778999
Q ss_pred HHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCc-----CCCCHHHHHHHH
Q 023640 153 KLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQF-----RTSSDDKVSSFQ 226 (279)
Q Consensus 153 ~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~-----~~~~~e~l~~~~ 226 (279)
++++.++.+.+.+..++.+++++++|+|++.+++++++++++..... +.+-.+.-.+ ...+ ..+..++..+|.
T Consensus 159 ~ile~L~~~~~~~~~~~vir~tlvkg~N~~~e~~~~~a~ll~~~~Pd~velk~~~rpg-as~~~l~~~~~p~~e~~~~f~ 237 (296)
T COG0731 159 KILEGLEIFRSEYKGRTVIRTTLVKGINDDEEELEEYAELLERINPDFVELKTYMRPG-ASRYRLPRSNMPLHEEVLEFA 237 (296)
T ss_pred HHHHHHHHhhhcCCCcEEEEEEEeccccCChHHHHHHHHHHHhcCCCeEEEecCccCC-hHhhccCccccchhHHHHHHH
Confidence 99999965544327789999999999999999999999999988764 6665443222 2222 256788888888
Q ss_pred HHHHhcCCeEE
Q 023640 227 KILRGSYNIRT 237 (279)
Q Consensus 227 ~~l~~~~gi~v 237 (279)
+.+.+..|+.+
T Consensus 238 ~~l~~~~~~~~ 248 (296)
T COG0731 238 KELGEELGYEI 248 (296)
T ss_pred HHhhcccCeee
Confidence 88873335543
No 32
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=99.94 E-value=2.5e-24 Score=196.38 Aligned_cols=174 Identities=18% Similarity=0.273 Sum_probs=138.2
Q ss_pred EEEEeccCCcCccCccccCCCCC----CccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCC-C
Q 023640 22 TLCISSQVGCKMGCNFCATGTMG----FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-P 96 (279)
Q Consensus 22 ~l~i~~~~gCNl~C~yC~~~~~~----~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~-g 96 (279)
.+.+++|.+||++|.||+.+... ....++.+++.+.+..... .|+..|.|+| ||||+++ .+.++++.+++. |
T Consensus 59 ~lrisvT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~-~Gv~~I~~tG-GEPllr~-dl~eli~~l~~~~g 135 (373)
T PLN02951 59 YLRISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLFVA-AGVDKIRLTG-GEPTLRK-DIEDICLQLSSLKG 135 (373)
T ss_pred EEEEEEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHHHHHH-CCCCEEEEEC-CCCcchh-hHHHHHHHHHhcCC
Confidence 57788999999999999875311 1245889999888776654 4789999999 9999985 588999999986 6
Q ss_pred CCCCCCeEEEEcCCchhh--hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCC-eEEEEE
Q 023640 97 FQVSPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ-KIFIEY 173 (279)
Q Consensus 97 ~~~~~~~v~i~TNG~~~~--~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~-~v~i~~ 173 (279)
+ ..+.|+|||++.. ..++.+.+ ...+.||+|+.+++.|+.+++. ..++.++++++. +.+.|. .+.+++
T Consensus 136 i----~~i~itTNG~lL~~~~~~L~~aG-ld~VnISLDsl~~e~~~~itr~---~~~~~vl~~I~~-a~~~G~~~vkin~ 206 (373)
T PLN02951 136 L----KTLAMTTNGITLSRKLPRLKEAG-LTSLNISLDTLVPAKFEFLTRR---KGHDRVLESIDT-AIELGYNPVKVNC 206 (373)
T ss_pred C----ceEEEeeCcchHHHHHHHHHhCC-CCeEEEeeccCCHHHHHHHhcC---CCHHHHHHHHHH-HHHcCCCcEEEEE
Confidence 2 3589999998653 44455543 3468899999999999988653 357999999954 556664 699999
Q ss_pred EEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCC
Q 023640 174 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIG 209 (279)
Q Consensus 174 vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~ 209 (279)
++++|+|+ +++.++++++.+.++.+.++.|+|.+
T Consensus 207 vv~~g~N~--~Ei~~li~~a~~~gi~vr~ie~mP~~ 240 (373)
T PLN02951 207 VVMRGFND--DEICDFVELTRDKPINVRFIEFMPFD 240 (373)
T ss_pred EecCCCCH--HHHHHHHHHHHhCCCeEEEEEcccCC
Confidence 99998866 57999999999999888889999885
No 33
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=99.93 E-value=2.4e-24 Score=192.05 Aligned_cols=174 Identities=23% Similarity=0.353 Sum_probs=138.4
Q ss_pred EEEEeccCCcCccCccccCCCCCC--ccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCC
Q 023640 22 TLCISSQVGCKMGCNFCATGTMGF--KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQV 99 (279)
Q Consensus 22 ~l~i~~~~gCNl~C~yC~~~~~~~--~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~ 99 (279)
.+.+++|.+||++|.||+.+.... ...++.+++.+.+..... .++..|.|+| ||||+++ .+.++++.+++.|+
T Consensus 11 ~l~i~vT~~CNl~C~yC~~~~~~~~~~~~ls~eei~~~i~~~~~-~gi~~I~~tG-GEPll~~-~l~~iv~~l~~~g~-- 85 (302)
T TIGR02668 11 SLRISVTDRCNLSCFYCHMEGEDRSGGNELSPEEIERIVRVASE-FGVRKVKITG-GEPLLRK-DLIEIIRRIKDYGI-- 85 (302)
T ss_pred eEEEEEcccccCCCCCCCccccCCCccCcCCHHHHHHHHHHHHH-cCCCEEEEEC-ccccccc-CHHHHHHHHHhCCC--
Confidence 577888999999999999864322 356899988877765554 4789999999 9999985 57799999988762
Q ss_pred CCCeEEEEcCCchhh--hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCe-EEEEEEEe
Q 023640 100 SPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIML 176 (279)
Q Consensus 100 ~~~~v~i~TNG~~~~--~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~-v~i~~vv~ 176 (279)
..+.++|||++.. ...+.+.+ ...+.||+|+.+++.++.+++ ..++++++++++. +.+.|.. +.++++++
T Consensus 86 --~~v~i~TNG~ll~~~~~~l~~~g-~~~v~iSld~~~~~~~~~i~~---~~~~~~vl~~i~~-~~~~G~~~v~i~~v~~ 158 (302)
T TIGR02668 86 --KDVSMTTNGILLEKLAKKLKEAG-LDRVNVSLDTLDPEKYKKITG---RGALDRVIEGIES-AVDAGLTPVKLNMVVL 158 (302)
T ss_pred --ceEEEEcCchHHHHHHHHHHHCC-CCEEEEEecCCCHHHhhhccC---CCcHHHHHHHHHH-HHHcCCCcEEEEEEEe
Confidence 3899999998653 23444443 346889999999999998864 4689999999954 5567765 99999999
Q ss_pred CCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCC
Q 023640 177 DGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIG 209 (279)
Q Consensus 177 ~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~ 209 (279)
+|.|+ +++.++++++.++++.+++++++|.+
T Consensus 159 ~g~n~--~ei~~~~~~~~~~g~~~~~ie~~p~~ 189 (302)
T TIGR02668 159 KGIND--NEIPDMVEFAAEGGAILQLIELMPPG 189 (302)
T ss_pred CCCCH--HHHHHHHHHHHhcCCEEEEEEEeECC
Confidence 97654 67999999999999999999988875
No 34
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=99.93 E-value=6.3e-24 Score=191.89 Aligned_cols=176 Identities=23% Similarity=0.310 Sum_probs=140.0
Q ss_pred EEEEeccCCcCccCccccCCC-C----CCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCC-
Q 023640 22 TLCISSQVGCKMGCNFCATGT-M----GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL- 95 (279)
Q Consensus 22 ~l~i~~~~gCNl~C~yC~~~~-~----~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~- 95 (279)
.+.+++|.+||++|.||+.+. . .....++.+++.+.+..+.. .++..|.|+| ||||++ +.+.++++.+++.
T Consensus 11 ~l~i~vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~-~gv~~V~ltG-GEPll~-~~l~~li~~i~~~~ 87 (334)
T TIGR02666 11 YLRISVTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVG-LGVRKVRLTG-GEPLLR-KDLVELVARLAALP 87 (334)
T ss_pred eEEEEecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHH-CCCCEEEEEC-cccccc-CCHHHHHHHHHhcC
Confidence 566677899999999999854 1 12456899999888877665 3789999999 999998 4578999988874
Q ss_pred CCCCCCC-eEEEEcCCchhh--hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCe-EEE
Q 023640 96 PFQVSPK-RITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFI 171 (279)
Q Consensus 96 g~~~~~~-~v~i~TNG~~~~--~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~-v~i 171 (279)
| . .+.++|||++.. ...+.+.+ ...+.||+|+.+++.++.+++. ..+++++++++ +.+.+.|.. +.+
T Consensus 88 g-----i~~v~itTNG~ll~~~~~~L~~~g-l~~v~ISld~~~~~~~~~i~~~--~~~~~~vl~~i-~~l~~~G~~~v~i 158 (334)
T TIGR02666 88 G-----IEDIALTTNGLLLARHAKDLKEAG-LKRVNVSLDSLDPERFAKITRR--GGRLEQVLAGI-DAALAAGLEPVKL 158 (334)
T ss_pred C-----CCeEEEEeCchhHHHHHHHHHHcC-CCeEEEecccCCHHHhheeCCC--CCCHHHHHHHH-HHHHHcCCCcEEE
Confidence 5 4 899999998653 34455543 3468899999999999888632 36899999999 556677876 999
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCCC
Q 023640 172 EYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSV 211 (279)
Q Consensus 172 ~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~ 211 (279)
+++++++.|+ +++.++++++.++++.+.++.|.|.+..
T Consensus 159 n~vv~~g~n~--~ei~~l~~~~~~~gv~~~~ie~mp~~~~ 196 (334)
T TIGR02666 159 NTVVMRGVND--DEIVDLAEFAKERGVTLRFIELMPLGEG 196 (334)
T ss_pred EEEEeCCCCH--HHHHHHHHHHHhcCCeEEEEeccCCCCC
Confidence 9999988765 6799999999999998888888887643
No 35
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.92 E-value=1.5e-23 Score=192.40 Aligned_cols=195 Identities=14% Similarity=0.159 Sum_probs=147.9
Q ss_pred ceEEEEeccCCcCccCccccCCCC--CCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCC
Q 023640 20 RSTLCISSQVGCKMGCNFCATGTM--GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPF 97 (279)
Q Consensus 20 ~~~l~i~~~~gCNl~C~yC~~~~~--~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~ 97 (279)
...+.+.+|.+||++|.||+.+.. .....++.+++.+.+.++.. .++..|.|+| |||||+++ +.++++.+++.|
T Consensus 15 P~~l~i~iT~~CNl~C~~C~~~~~~~~~~~~~~~e~~~~ii~~~~~-~g~~~v~~~G-GEPll~~~-~~~il~~~~~~g- 90 (378)
T PRK05301 15 PLWLLAELTYRCPLQCPYCSNPLDLARHGAELSTEEWIRVLREARA-LGALQLHFSG-GEPLLRKD-LEELVAHARELG- 90 (378)
T ss_pred CeEEEEEecCccCcCCCCCCCccccccccCCCCHHHHHHHHHHHHH-cCCcEEEEEC-CccCCchh-HHHHHHHHHHcC-
Confidence 356777788999999999998532 23457888888888877654 3678999999 99999855 789999999887
Q ss_pred CCCCCeEEEEcCCchhh---hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEE
Q 023640 98 QVSPKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYI 174 (279)
Q Consensus 98 ~~~~~~v~i~TNG~~~~---~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~v 174 (279)
+.+.|.|||++.+ ++.+.+.+ ...+.||||+.+++.|+.+++. .++|+++++++ +.+++.|.++.++++
T Consensus 91 ----~~~~i~TNG~ll~~~~~~~L~~~g-~~~v~iSldg~~~e~~d~irg~--~g~f~~~~~~i-~~l~~~g~~v~i~~v 162 (378)
T PRK05301 91 ----LYTNLITSGVGLTEARLAALKDAG-LDHIQLSFQDSDPELNDRLAGT--KGAFAKKLAVA-RLVKAHGYPLTLNAV 162 (378)
T ss_pred ----CcEEEECCCccCCHHHHHHHHHcC-CCEEEEEecCCCHHHHHHHcCC--CchHHHHHHHH-HHHHHCCCceEEEEE
Confidence 6789999998654 33444432 2458899999999999988643 35899999999 667788999999999
Q ss_pred EeCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCC---CCcCCCCHHHHHHHHHHH
Q 023640 175 MLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSV---SQFRTSSDDKVSSFQKIL 229 (279)
Q Consensus 175 v~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~---~~~~~~~~e~l~~~~~~l 229 (279)
+.+. +.+++.++++++.++|+. +.+.+..+.+.. .....++.+++.++.+++
T Consensus 163 v~~~---N~~~i~~~~~~~~~lgv~~i~~~~~~~~g~~~~~~~~~~~~~e~~~~~~~~~ 218 (378)
T PRK05301 163 IHRH---NIDQIPRIIELAVELGADRLELANTQYYGWALLNRAALMPTREQLERAERIV 218 (378)
T ss_pred eecC---CHHHHHHHHHHHHHcCCCEEEEecccccChhhhcccccCCCHHHHHHHHHHH
Confidence 8754 678899999999999986 666665554321 112245677777665544
No 36
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.92 E-value=2.9e-23 Score=189.29 Aligned_cols=194 Identities=16% Similarity=0.188 Sum_probs=144.1
Q ss_pred ceEEEEeccCCcCccCccccCCCC--CCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCC
Q 023640 20 RSTLCISSQVGCKMGCNFCATGTM--GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPF 97 (279)
Q Consensus 20 ~~~l~i~~~~gCNl~C~yC~~~~~--~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~ 97 (279)
...+.+.+|.+||++|.||+++.. .....++.+++.+.+.++.. .++..|.|+| |||||++ .+.++++.+++.|
T Consensus 6 P~~l~ieiT~~CNl~C~~C~~~~~~~~~~~~l~~e~~~~ii~~~~~-~g~~~v~~~G-GEPll~~-~~~~ii~~~~~~g- 81 (358)
T TIGR02109 6 PLWLLAELTHRCPLQCPYCSNPLELARRKAELTTEEWTDVLTQAAE-LGVLQLHFSG-GEPLARP-DLVELVAHARRLG- 81 (358)
T ss_pred CcEEEEeeccccCcCCCCCCCChhcccccCCCCHHHHHHHHHHHHh-cCCcEEEEeC-ccccccc-cHHHHHHHHHHcC-
Confidence 356778889999999999998532 12456888888887777665 3678999999 9999985 5789999999987
Q ss_pred CCCCCeEEEEcCCchhh---hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEE
Q 023640 98 QVSPKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYI 174 (279)
Q Consensus 98 ~~~~~~v~i~TNG~~~~---~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~v 174 (279)
..+.+.|||++.. ++.+.+.+ ...|.||||+.+++.|+++++. .++|+++++++ +.+++.|..+.++++
T Consensus 82 ----~~~~l~TNG~ll~~e~~~~L~~~g-~~~v~iSldg~~~e~~d~~rg~--~g~f~~v~~~i-~~l~~~g~~v~v~~v 153 (358)
T TIGR02109 82 ----LYTNLITSGVGLTEARLDALADAG-LDHVQLSFQGVDEALADRIAGY--KNAFEQKLAMA-RAVKAAGLPLTLNFV 153 (358)
T ss_pred ----CeEEEEeCCccCCHHHHHHHHhCC-CCEEEEeCcCCCHHHHHHhcCC--ccHHHHHHHHH-HHHHhCCCceEEEEE
Confidence 6899999998654 33344432 2358899999999999988542 35799999999 567788999999999
Q ss_pred EeCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCC---CCcCCCCHHHHHHHHHH
Q 023640 175 MLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSV---SQFRTSSDDKVSSFQKI 228 (279)
Q Consensus 175 v~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~---~~~~~~~~e~l~~~~~~ 228 (279)
+.+. +.+++.++++++.++|+. +.+.+..+.+.. .....++.+++.++.++
T Consensus 154 v~~~---N~~~l~~~~~~~~~lg~~~i~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~ 208 (358)
T TIGR02109 154 IHRH---NIDQIPEIIELAIELGADRVELATTQYYGWALLNRAALMPTRAQLEEATRI 208 (358)
T ss_pred eccC---CHHHHHHHHHHHHHcCCCEEEEEeeeccCchhcchhhcCCCHHHHHHHHHH
Confidence 8754 678899999999999975 555443333211 11224566666655444
No 37
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=99.91 E-value=5.8e-23 Score=171.27 Aligned_cols=156 Identities=17% Similarity=0.223 Sum_probs=121.0
Q ss_pred cCCcCccCccccCCCCC---CccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeE
Q 023640 28 QVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRI 104 (279)
Q Consensus 28 ~~gCNl~C~yC~~~~~~---~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v 104 (279)
+.+||++|.||+++... ....++++++++.+.+... .+..|.|+| |||+++++ +.++++.+++.| ..+
T Consensus 23 t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~~--~~~~i~~sG-GEPll~~~-l~~li~~~~~~g-----~~v 93 (191)
T TIGR02495 23 FQGCNLKCPYCHNPELIDREGSGEIEVEFLLEFLRSRQG--LIDGVVITG-GEPTLQAG-LPDFLRKVRELG-----FEV 93 (191)
T ss_pred cCCCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhcC--CCCeEEEEC-CcccCcHh-HHHHHHHHHHCC-----CeE
Confidence 48999999999996421 2356899999998887532 367899999 99999866 889999999987 689
Q ss_pred EEEcCCchhh-hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHH-HHHHHHHHHHHhhCCeEEEEEEEeCCCCCc
Q 023640 105 TVSTVGIVHA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLE-KLMNALKEYQKNSQQKIFIEYIMLDGVNDE 182 (279)
Q Consensus 105 ~i~TNG~~~~-~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~-~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~ 182 (279)
.+.|||+... +.++++.+....+.+|+++. ++.+..+++. ...+. ++++++ +.+++.|..+.+++++++++++
T Consensus 94 ~i~TNg~~~~~l~~l~~~g~~~~v~isl~~~-~~~~~~~~g~--~~~~~~~~~~~i-~~l~~~gi~~~i~~~v~~~~~~- 168 (191)
T TIGR02495 94 KLDTNGSNPRVLEELLEEGLVDYVAMDVKAP-PEKYPELYGL--EKNGSNNILKSL-EILLRSGIPFELRTTVHRGFLD- 168 (191)
T ss_pred EEEeCCCCHHHHHHHHhcCCCcEEEEeccCC-hHHHHHHHCC--CCchHHHHHHHH-HHHHHcCCCEEEEEEEeCCCCC-
Confidence 9999998643 34455543123467899985 5556666543 23454 899999 5677789999999999999887
Q ss_pred HHHHHHHHHHHhhCC
Q 023640 183 EQHAHQLGKLLETFQ 197 (279)
Q Consensus 183 ~~~l~~l~~~l~~~~ 197 (279)
.+++.++++++++++
T Consensus 169 ~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 169 EEDLAEIATRIKENG 183 (191)
T ss_pred HHHHHHHHHHhccCC
Confidence 779999999999887
No 38
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.91 E-value=1.1e-22 Score=182.10 Aligned_cols=189 Identities=16% Similarity=0.229 Sum_probs=139.9
Q ss_pred eEEEEeccCCcCccCccccCCCCC---CccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCC
Q 023640 21 STLCISSQVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPF 97 (279)
Q Consensus 21 ~~l~i~~~~gCNl~C~yC~~~~~~---~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~ 97 (279)
.++.+.+|.+||++|.||+.+... ....++.+++++.+.+. ++..|+|+| ||||+++ .+.++++.+++.|
T Consensus 28 l~l~le~T~~CNL~C~~C~~~~~~~~~~~~~ls~ee~~~~i~e~----g~~~V~i~G-GEPLL~p-dl~eiv~~~~~~g- 100 (318)
T TIGR03470 28 LVLMLEPLFRCNLACAGCGKIQYPAEILKQRLSVEECLRAVDEC----GAPVVSIPG-GEPLLHP-EIDEIVRGLVARK- 100 (318)
T ss_pred CEEEEecccccCcCCcCCCCCcCCCcccccCCCHHHHHHHHHHc----CCCEEEEeC-ccccccc-cHHHHHHHHHHcC-
Confidence 477788899999999999985432 23468888888776642 567899999 9999985 5889999999887
Q ss_pred CCCCCeEEEEcCCchhh--hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEE
Q 023640 98 QVSPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM 175 (279)
Q Consensus 98 ~~~~~~v~i~TNG~~~~--~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv 175 (279)
..+.+.|||++.. +.++... ....+.||+|+.. +.|+..++ +.++|+.+++++ +.+++.|.++.+++++
T Consensus 101 ----~~v~l~TNG~ll~~~~~~l~~~-~~~~i~VSLDG~~-e~hd~~~~--~~g~f~~~l~~I-~~l~~~G~~v~v~~tv 171 (318)
T TIGR03470 101 ----KFVYLCTNALLLEKKLDKFEPS-PYLTFSVHLDGLR-EHHDASVC--REGVFDRAVEAI-REAKARGFRVTTNTTL 171 (318)
T ss_pred ----CeEEEecCceehHHHHHHHHhC-CCcEEEEEEecCc-hhhchhhc--CCCcHHHHHHHH-HHHHHCCCcEEEEEEE
Confidence 6899999998764 2334333 2456889999975 56666542 347899999999 5566788899999988
Q ss_pred eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCC-cCCCCHHHHHHHHH
Q 023640 176 LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQ-FRTSSDDKVSSFQK 227 (279)
Q Consensus 176 ~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~-~~~~~~e~l~~~~~ 227 (279)
+.+ ++.+++.++++++.++|+. +.+.|..|.+.+.. -...+.++..++.+
T Consensus 172 ~~~--~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~~a~~~~~~l~~~e~~~~~~ 223 (318)
T TIGR03470 172 FND--TDPEEVAEFFDYLTDLGVDGMTISPGYAYEKAPDQDHFLGRRQTKKLFR 223 (318)
T ss_pred eCC--CCHHHHHHHHHHHHHcCCCEEEEecCcccccccccccccCHHHHHHHHH
Confidence 754 4678999999999999985 77878776542211 11234555444433
No 39
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=99.88 E-value=5.2e-21 Score=174.93 Aligned_cols=196 Identities=14% Similarity=0.238 Sum_probs=143.8
Q ss_pred cCCcCccCccccCCCCC---------------------------CccCCCHHHHHHHHHHHhccC--CCceEEEecCCcc
Q 023640 28 QVGCKMGCNFCATGTMG---------------------------FKSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEP 78 (279)
Q Consensus 28 ~~gCNl~C~yC~~~~~~---------------------------~~~~~~~~ei~~~i~~~~~~~--~~~~I~fsG~GEP 78 (279)
+.|||+.|+|||++... .+..++++++++.+.+...+. ....|+|+|.|||
T Consensus 6 ~~gC~~~C~wC~~p~~~~~~~~~c~~C~~~~~~C~yC~~~~~e~~g~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGep 85 (404)
T TIGR03278 6 GIDCRGFCRYCYFKKVDDEQPFGCKNCPPGTKGCDYCTRSVWEINGDFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDV 85 (404)
T ss_pred CCCCCCcCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCchhhhhcCCcCCHHHHHHHHHHHHHHhcCCCCEEEEECCccc
Confidence 46888888888874210 135688999999999865432 4578999994455
Q ss_pred ccCHHHHHHHHHHHhCCCCCCCCCeEEEE-cCCchh-h---hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHH
Q 023640 79 LNNYAALVEAVRIMTGLPFQVSPKRITVS-TVGIVH-A---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 153 (279)
Q Consensus 79 ll~~~~i~~~i~~~~~~g~~~~~~~v~i~-TNG~~~-~---~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~ 153 (279)
++ ++++.++++.+++.| +++.+. |||... . ++++++.. ..-+.+|+|+.+++.|+++++.. ..+.
T Consensus 86 l~-~~~l~eLl~~lk~~g-----i~taI~~TnG~~l~~~e~~~~L~~~g-ld~v~iSvka~dpe~h~kl~G~~---~a~~ 155 (404)
T TIGR03278 86 SC-YPELEELTKGLSDLG-----LPIHLGYTSGKGFDDPEIAEFLIDNG-VREVSFTVFATDPELRREWMKDP---TPEA 155 (404)
T ss_pred cc-CHHHHHHHHHHHhCC-----CCEEEeCCCCcccCCHHHHHHHHHcC-CCEEEEecccCCHHHHHHHhCCC---CHHH
Confidence 55 588999999999988 678886 998632 2 44555542 13467999999999999987532 2389
Q ss_pred HHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCC----------CCcCCCCHHHH
Q 023640 154 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSV----------SQFRTSSDDKV 222 (279)
Q Consensus 154 i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~----------~~~~~~~~e~l 222 (279)
++++++.+.+ +..+.++++++||+||+++ +.++++++.++++. +.+.+|++.+.. .++.+.+.+++
T Consensus 156 ILe~L~~L~e--~~~v~~~ivlIPGiND~ee-l~~ti~~L~~lg~~~V~L~~y~~~g~~ky~lg~~~~~~~~~~~~~~e~ 232 (404)
T TIGR03278 156 SLQCLRRFCE--SCEVHAASVIIPGVNDGDV-LWKTCADLESWGAKALILMRFANTEEQGLILGNAPIIPGIKPHTVSEF 232 (404)
T ss_pred HHHHHHHHHh--cCCEEEEEEEeCCccCcHH-HHHHHHHHHHCCCCEEEEEecccccccccccCCcCcccCCCCCCHHHH
Confidence 9999966554 4789999999999999865 46999999999986 999999964311 12456688888
Q ss_pred HHH-HHHHHhcCCeEE
Q 023640 223 SSF-QKILRGSYNIRT 237 (279)
Q Consensus 223 ~~~-~~~l~~~~gi~v 237 (279)
.++ .++.+ ++++++
T Consensus 233 ~~~v~~~~~-~~~i~~ 247 (404)
T TIGR03278 233 KNIVRETHK-EFPIRV 247 (404)
T ss_pred HHHHHHHHH-HhCCcc
Confidence 877 44444 666543
No 40
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=99.88 E-value=3.6e-21 Score=163.54 Aligned_cols=211 Identities=15% Similarity=0.289 Sum_probs=160.6
Q ss_pred CCCCCccccCcc--CCCCCceEEEEeccCCcCccCccccCCCCC---CccCCCHHHHHHHHHHHhccCCCceEEEecCCc
Q 023640 3 YDSSLGKYNGKP--RPGGPRSTLCISSQVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE 77 (279)
Q Consensus 3 ~~~~~~~~~~~~--~p~~~~~~l~i~~~~gCNl~C~yC~~~~~~---~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GE 77 (279)
+++-+.+..++| .| +-|+|+ .||||+|.||+||... .+..++++++.+.+.+... .|.++|+|.| ||
T Consensus 104 vas~flH~GEE~~Lvp---SgTVFF---sgCnfrCVfCQNwdISq~~~g~~v~~e~La~i~~~~~~-~GakNvN~Vg-g~ 175 (335)
T COG1313 104 VASEFLHFGEEPPLVP---SGTVFF---SGCNFRCVFCQNWDISQFGIGKEVTPEDLAEIILELRR-HGAKNVNFVG-GD 175 (335)
T ss_pred eeccccccCcCCcccC---CceEEe---cCcceEEEEecCccccccCCCeEecHHHHHHHHHHHHH-hcCcceeecC-CC
Confidence 456666777776 45 569999 7999999999998543 4678999999999988775 4899999999 99
Q ss_pred cccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhh-hHHHhccCCCceEEE-EeCCCCHHHHhhhcCCCCCCCHHHHH
Q 023640 78 PLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHA-INKFHSDLPGLNLAV-SLHAPVQDVRCQIMPAARAFPLEKLM 155 (279)
Q Consensus 78 Pll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~-~~~l~~~~~~~~i~i-Sld~~~~~~~~~i~~~~~~~~~~~i~ 155 (279)
|+-|.++|++.++.+.+. +.+...||++... ..++++. .+||.+ +++-.+++...+.-.. ..-++-+.
T Consensus 176 Ptp~lp~Ile~l~~~~~~------iPvvwNSnmY~s~E~l~lL~g--vVDiyL~DfKYgNdeca~kySkv--p~Y~eVv~ 245 (335)
T COG1313 176 PTPHLPFILEALRYASEN------IPVVWNSNMYMSEETLKLLDG--VVDIYLPDFKYGNDECAEKYSKV--PNYWEVVT 245 (335)
T ss_pred CCCchHHHHHHHHHHhcC------CCEEEecCCccCHHHHHHhhc--cceeeecccccCCHHHHHHhhcC--CchHHHHH
Confidence 999999999999998876 6799999998642 2334442 579987 8988888776665322 23367777
Q ss_pred HHHHHHHHhhCCeEEEEEEEeCCCCCcHHH-HHHHHHHHhhC-C--cEEEEE-ecCCCCCCCCc----CCCCHHHHHHHH
Q 023640 156 NALKEYQKNSQQKIFIEYIMLDGVNDEEQH-AHQLGKLLETF-Q--VVVNLI-PFNPIGSVSQF----RTSSDDKVSSFQ 226 (279)
Q Consensus 156 ~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~-l~~l~~~l~~~-~--~~i~l~-~~~p~~~~~~~----~~~~~e~l~~~~ 226 (279)
+|+.. +.+....+.+++.|+||. .+. -..+.+|+++. + +.++++ +|+|.+.+..| +.++.++++++.
T Consensus 246 rn~~~-~~~~~g~~iiRHLVlPgh---lecCTkpI~~wiae~~g~~~~vNiM~QY~P~ykA~eypeI~R~lt~eE~e~a~ 321 (335)
T COG1313 246 RNILE-AKEQVGGLIIRHLVLPGH---LECCTKPILRWIAENLGNDVRVNIMFQYRPEYKAEEYPEINRRLTREEYEKAL 321 (335)
T ss_pred HHHHH-HHHhcCceEEEEEecCCc---hhhccHHHHHHHHHhCCCCeeEEehhhccchhhhhhchhhcccCCHHHHHHHH
Confidence 88844 444444799999999983 334 56788888774 3 347776 58998765665 357899999999
Q ss_pred HHHHhcCCeE
Q 023640 227 KILRGSYNIR 236 (279)
Q Consensus 227 ~~l~~~~gi~ 236 (279)
++++ ++|+.
T Consensus 322 ~~a~-~~gl~ 330 (335)
T COG1313 322 EYAE-KLGLT 330 (335)
T ss_pred HHHH-HcCCc
Confidence 9999 88875
No 41
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=99.88 E-value=5.1e-21 Score=175.26 Aligned_cols=200 Identities=15% Similarity=0.206 Sum_probs=130.2
Q ss_pred EEEEec-cCCcCccCccccCCCCCC------ccCCCHHHHHHHHHHHhcc-CCCceEEEecCCccccCH-HHHHHHHHHH
Q 023640 22 TLCISS-QVGCKMGCNFCATGTMGF------KSNLSSGEIVEQLVHASRL-SNIRNVVFMGMGEPLNNY-AALVEAVRIM 92 (279)
Q Consensus 22 ~l~i~~-~~gCNl~C~yC~~~~~~~------~~~~~~~ei~~~i~~~~~~-~~~~~I~fsG~GEPll~~-~~i~~~i~~~ 92 (279)
.+++-+ |.+||++|.||+.+.... ...++.+.+...++.+... .+...|.|+| |||||++ +.+.++++.+
T Consensus 5 ~~~~~~~t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~~~~~~i~~~G-GEPll~~~~~~~~~~~~~ 83 (370)
T PRK13758 5 SLLIKPASSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQG-GEPTLAGLEFFEELMELQ 83 (370)
T ss_pred EEEEecCCCCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhccCCceEEEEEC-CccccCChHHHHHHHHHH
Confidence 444444 479999999999863211 1245654444444433322 1345799999 9999984 6667888888
Q ss_pred hCCCCCCCCCeEEEEcCCchhh--hHHHhccCCCceEEEEeCCCCHHHHhhhcCC-CCCCCHHHHHHHHHHHHHhhCCeE
Q 023640 93 TGLPFQVSPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPA-ARAFPLEKLMNALKEYQKNSQQKI 169 (279)
Q Consensus 93 ~~~g~~~~~~~v~i~TNG~~~~--~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~-~~~~~~~~i~~~l~~~~~~~~~~v 169 (279)
++.|..-....++|+|||++.+ +.+.+... .+.+.||||++ ++.|+..++. ++.++|+.++++++ .+++.+.++
T Consensus 84 ~~~~~~~~~~~~~i~TNG~ll~~~~~~~l~~~-~~~v~iSlDg~-~~~hd~~R~~~~g~~~f~~v~~~i~-~l~~~~~~~ 160 (370)
T PRK13758 84 RKHNYKNLKIYNSLQTNGTLIDESWAKFLSEN-KFLVGLSMDGP-KEIHNLNRKDCCGLDTFSKVERAAE-LFKKYKVEF 160 (370)
T ss_pred HHhccCCCeEEEEEEecCEecCHHHHHHHHHc-CceEEEeecCC-HHHhccccCCCCCCccHHHHHHHHH-HHHHhCCCc
Confidence 8765211113479999998754 22322323 35788999997 5677766532 24578999999994 556778889
Q ss_pred EEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEe-cCCCCCCCCc--CCCCHHHHHHHHHH
Q 023640 170 FIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIP-FNPIGSVSQF--RTSSDDKVSSFQKI 228 (279)
Q Consensus 170 ~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~-~~p~~~~~~~--~~~~~e~l~~~~~~ 228 (279)
.+++++.+. +.+++.++++++.++++. +++.+ +.|.+.+... ...+.+++.++.+.
T Consensus 161 ~i~~~v~~~---n~~~l~~i~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~ 220 (370)
T PRK13758 161 NILCVVTSN---TARHVNKIYKYFKEKDFKFLQFINCLDPLYEEKGKYNYSLKPKDYTKFLKN 220 (370)
T ss_pred eEEEEeccc---cccCHHHHHHHHHHcCCCeEeeeeccCccccccCCCcCccCHHHHHHHHHH
Confidence 999998865 456789999999999886 66654 4565422221 12456655554443
No 42
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=99.87 E-value=2.2e-20 Score=173.12 Aligned_cols=185 Identities=12% Similarity=0.160 Sum_probs=128.2
Q ss_pred CCCCCceEEEEecc-CCcCccCccccCCCC------CCccCCCHHHHHHHHHHHhccCCC--ceEEEecCCccccCHH-H
Q 023640 15 RPGGPRSTLCISSQ-VGCKMGCNFCATGTM------GFKSNLSSGEIVEQLVHASRLSNI--RNVVFMGMGEPLNNYA-A 84 (279)
Q Consensus 15 ~p~~~~~~l~i~~~-~gCNl~C~yC~~~~~------~~~~~~~~~ei~~~i~~~~~~~~~--~~I~fsG~GEPll~~~-~ 84 (279)
+|....+++.+-++ ..||++|.||+.... .....|+.+.+.+.+++.....+. ..|+|+| |||||+++ +
T Consensus 7 ~~~~~p~~~~~kp~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~G-GEPlL~~~~~ 85 (412)
T PRK13745 7 APFAKPLYIMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHG-GETLMRPLSF 85 (412)
T ss_pred cccCcceEEEEeecCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEc-cccCCCcHHH
Confidence 56666678888755 689999999997421 112358887777777765533233 3577899 99999854 3
Q ss_pred HHHHHHHHhCCCCCCCCCeEEEEcCCchhh--hHHHhccCCCceEEEEeCCCCHHHHhhhcCC-CCCCCHHHHHHHHHHH
Q 023640 85 LVEAVRIMTGLPFQVSPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPA-ARAFPLEKLMNALKEY 161 (279)
Q Consensus 85 i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~--~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~-~~~~~~~~i~~~l~~~ 161 (279)
+.++++.+++.. ....+.++|+|||++.+ +.++.... .+.|.||||++ ++.|+..++. ++.++|+++++++ +.
T Consensus 86 ~~~~~~~~~~~~-~~~~i~~~i~TNG~ll~~e~~~~l~~~-~~~v~ISlDG~-~~~hD~~R~~~~g~gsf~~v~~~i-~~ 161 (412)
T PRK13745 86 YKKALELQKKYA-RGRQIDNCIQTNGTLLTDEWCEFFREN-NFLVGVSIDGP-QEFHDEYRKNKMGKPSFVKVMKGI-NL 161 (412)
T ss_pred HHHHHHHHHHHc-CCCceEEEEeecCEeCCHHHHHHHHHc-CeEEEEEecCC-HHHhhhhcCCCCCCccHHHHHHHH-HH
Confidence 444554443210 00126889999998764 22222333 35788999997 5677766532 2357899999999 55
Q ss_pred HHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCC
Q 023640 162 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNP 207 (279)
Q Consensus 162 ~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p 207 (279)
+++.|+.+.+.+++.+. +.+++.++++++.++|++ +++.|+.|
T Consensus 162 l~~~gi~~~i~~vv~~~---n~~~~~e~~~~~~~lg~~~~~~~p~~~ 205 (412)
T PRK13745 162 LKKHGVEWNAMAVVNDF---NADYPLDFYHFFKELDCHYIQFAPIVE 205 (412)
T ss_pred HHHcCCCEEEEEEEcCC---ccccHHHHHHHHHHcCCCeEEEEeccC
Confidence 66788999999998865 556788999999999986 88888766
No 43
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.86 E-value=5.2e-20 Score=158.55 Aligned_cols=208 Identities=15% Similarity=0.267 Sum_probs=154.0
Q ss_pred CceEEEEeccCCcCccCccccCCCCCC------ccCCCHHHHHHHHHHHhccCCC-ceEEEecCCccccCHHHHHHHHHH
Q 023640 19 PRSTLCISSQVGCKMGCNFCATGTMGF------KSNLSSGEIVEQLVHASRLSNI-RNVVFMGMGEPLNNYAALVEAVRI 91 (279)
Q Consensus 19 ~~~~l~i~~~~gCNl~C~yC~~~~~~~------~~~~~~~ei~~~i~~~~~~~~~-~~I~fsG~GEPll~~~~i~~~i~~ 91 (279)
...++-+..+.|||++|.||....... .-.++++.+++++....++.+- -...+-|.|||+++ +++.++++.
T Consensus 105 GtNviqVRp~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lY-P~l~~lVqa 183 (414)
T COG2100 105 GTNVIQVRPSTGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLY-PHLVDLVQA 183 (414)
T ss_pred CceEEEecCCccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCCCCCccc-hhHHHHHHH
Confidence 556777888899999999998732221 2246789999999987664332 36889999999996 789999999
Q ss_pred HhCC-CCCCCCCeEEEEcCCchhh---hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCC
Q 023640 92 MTGL-PFQVSPKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 167 (279)
Q Consensus 92 ~~~~-g~~~~~~~v~i~TNG~~~~---~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~ 167 (279)
+++. | .-.++++|||+.++ .+++.+.+ ...+.+|+||.++...+.+.+. +.++.+.+++-+ +++..+++
T Consensus 184 lk~~~~----v~vVSmQTng~~L~~~lv~eLeeAG-LdRiNlSv~aLDpk~Ak~L~G~-~dYdv~kvle~a-E~i~~a~i 256 (414)
T COG2100 184 LKEHKG----VEVVSMQTNGVLLSKKLVDELEEAG-LDRINLSVDALDPKLAKMLAGR-KDYDVKKVLEVA-EYIANAGI 256 (414)
T ss_pred HhcCCC----ceEEEEeeCceeccHHHHHHHHHhC-CceEEeecccCCHHHHHHhcCc-cccCHHHHHHHH-HHHHhCCC
Confidence 9988 4 36799999998764 34555554 3568899999999999988753 468899999999 66667999
Q ss_pred eEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-----EEEEecCCCCCCC---CcCCCCHHHHHHHHHHHHhcCCeE
Q 023640 168 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-----VNLIPFNPIGSVS---QFRTSSDDKVSSFQKILRGSYNIR 236 (279)
Q Consensus 168 ~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-----i~l~~~~p~~~~~---~~~~~~~e~l~~~~~~l~~~~gi~ 236 (279)
.+.+.-+++||+|| +++.++++|..++|.- +.++-|.|..-+. ..++.+..++-+....+++++|+.
T Consensus 257 dvlIaPv~lPG~ND--~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk~GRkp~~~k~~~fkeFYrwLrelEketg~k 331 (414)
T COG2100 257 DVLIAPVWLPGVND--DEMPKIIEWAREIGAGKKWPPLGIQKYIPYKFGRKPVIAKVWPFKEFYRWLRELEKETGVK 331 (414)
T ss_pred CEEEeeeecCCcCh--HHHHHHHHHHHHhCCCCCCCCcceEEeeeecccCCccccccCcHHHHHHHHHHHHHHhCCC
Confidence 99999999999987 4799999999998641 3334444432111 123445666555555555567765
No 44
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=99.85 E-value=4.5e-19 Score=158.93 Aligned_cols=202 Identities=18% Similarity=0.223 Sum_probs=142.6
Q ss_pred EEeccCCcCccCccccCCCC-C--CccCCCHHHHHHHHHHHhccCCCceEEEecCCccccC-HHHHHHHHHHHhCCCCCC
Q 023640 24 CISSQVGCKMGCNFCATGTM-G--FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN-YAALVEAVRIMTGLPFQV 99 (279)
Q Consensus 24 ~i~~~~gCNl~C~yC~~~~~-~--~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~-~~~i~~~i~~~~~~g~~~ 99 (279)
.+.+|.+||++|+||+++.. + ....++.+++.+.+..+....++..|.||| ||||+. .+.+.++++.+++.+.
T Consensus 91 ll~vT~~C~~~Cr~C~r~~~~~~~~~~~l~~~e~~~~i~~i~~~~~I~~VilSG-GDPl~~~~~~L~~ll~~l~~i~~-- 167 (321)
T TIGR03822 91 LLKPVHVCPVYCRFCFRREMVGPEGLGVLSPAELDAAFAYIADHPEIWEVILTG-GDPLVLSPRRLGDIMARLAAIDH-- 167 (321)
T ss_pred EEEecCCCCCcCcCCCchhhcCCcccCcCCHHHHHHHHHHHHhCCCccEEEEeC-CCcccCCHHHHHHHHHHHHhCCC--
Confidence 34457999999999998542 1 124467777777777666445788999999 999986 4679999999988741
Q ss_pred CCCeEEEEcC-----Cchhh---hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEE
Q 023640 100 SPKRITVSTV-----GIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 171 (279)
Q Consensus 100 ~~~~v~i~TN-----G~~~~---~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i 171 (279)
...+.+.|+ +...+ .+.+.+.+ ..+.|++|+..+. .+ .+.+++++ +.+++.|+.+..
T Consensus 168 -v~~iri~Tr~~v~~p~rit~ell~~L~~~g--~~v~i~l~~~h~~---el--------~~~~~~ai-~~L~~~Gi~v~~ 232 (321)
T TIGR03822 168 -VKIVRFHTRVPVADPARVTPALIAALKTSG--KTVYVALHANHAR---EL--------TAEARAAC-ARLIDAGIPMVS 232 (321)
T ss_pred -ccEEEEeCCCcccChhhcCHHHHHHHHHcC--CcEEEEecCCChh---hc--------CHHHHHHH-HHHHHcCCEEEE
Confidence 124677774 33222 22333332 4577899875432 11 36888999 567789999999
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHh---cCCeEEEeccccc
Q 023640 172 EYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG---SYNIRTTVRKQMG 244 (279)
Q Consensus 172 ~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~---~~gi~v~vr~~~g 244 (279)
++++++|+||+.+++.++.+++.++|+. +.+..+.|.+. ......+.++..++.+.+.. .+.++..++...|
T Consensus 233 q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g-~~~f~~~~~~~~~i~~~l~~~~~g~~~p~~v~~~~~ 308 (321)
T TIGR03822 233 QSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLDLAPG-TAHFRVTIEEGQALVRALRGRISGLAQPTYVLDIPG 308 (321)
T ss_pred EeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCC-cccccCcHHHHHHHHHHHHHhCCCCcceeEEEeCCC
Confidence 9999999999999999999999999986 66777888743 33334677777777776662 2334556665544
No 45
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=99.84 E-value=1.2e-19 Score=164.70 Aligned_cols=192 Identities=13% Similarity=0.167 Sum_probs=126.6
Q ss_pred cCC-cCccCccccCCCCCCc-cCCCHHHHHHHHHHHhccCCCc--eEEEecCCccccCHHHHHHHHHHHhCC-CCCCCCC
Q 023640 28 QVG-CKMGCNFCATGTMGFK-SNLSSGEIVEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPK 102 (279)
Q Consensus 28 ~~g-CNl~C~yC~~~~~~~~-~~~~~~ei~~~i~~~~~~~~~~--~I~fsG~GEPll~~~~i~~~i~~~~~~-g~~~~~~ 102 (279)
+.. ||++|.||+....... +.|+.+.+.+.+.......+.. .|+|.| |||||....+.+.+..+.+. .- -..+
T Consensus 14 t~~~CNL~C~YC~~~~~~~~~~~Ms~etle~~i~~~~~~~~~~~v~~~w~G-GEPlL~~~~f~~~~~~l~~k~~~-~~~i 91 (378)
T COG0641 14 TGFECNLDCKYCFYLEKESLQRIMSDETLEEYVRQYIAASNGDKVTFTWQG-GEPLLAGLDFYRKAVALQQKYAN-GKTI 91 (378)
T ss_pred ccCccCCCCCeeCcccCCCCCCCCCHHHHHHHHHHHHhhCCCCeeEEEEEC-CccccchHHHHHHHHHHHHHHhc-CCee
Confidence 344 9999999998654332 2466555555555444333334 599999 99999954444444332222 11 2346
Q ss_pred eEEEEcCCchhh--hHHHhccCCCceEEEEeCCCCHHHHhhhcC-CCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCC
Q 023640 103 RITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMP-AARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV 179 (279)
Q Consensus 103 ~v~i~TNG~~~~--~~~l~~~~~~~~i~iSld~~~~~~~~~i~~-~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~ 179 (279)
+.+++|||++++ +.++.... .+.|+||||++ +++|+..++ .++.++|+++++++ +++++.+..+.+.++|.+
T Consensus 92 ~~siqTNg~LL~~e~~e~l~~~-~~~IgISiDGp-~eihD~~R~~~~GkgTfd~i~~~i-~~L~~~~v~~~~~~vv~~-- 166 (378)
T COG0641 92 SNALQTNGTLLNDEWAEFLAEH-DFLIGISIDGP-EEIHDKYRVTKSGKGTFDRVMKGL-ELLQAHGVDFNTLTVVNR-- 166 (378)
T ss_pred EEEEEEcccccCHHHHHHHHhc-CceEEEeccCc-hHhccccccCCCCCccHHHHHHHH-HHHHHcCCcEEEEEEEch--
Confidence 778999998875 33444444 35888999998 667776643 35678999999999 667778888888888764
Q ss_pred CCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCC---CcCCCCHHHHHHHHH
Q 023640 180 NDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVS---QFRTSSDDKVSSFQK 227 (279)
Q Consensus 180 nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~---~~~~~~~e~l~~~~~ 227 (279)
++.+...++.+++.+.+.+ ++++|..+..... .-...+.+++.++..
T Consensus 167 -~n~~~~~ei~~~l~~~g~~~i~fip~~~~~~~~~~~~~~~~~~~~~~~fl~ 217 (378)
T COG0641 167 -QNVLHPEEIYHFLKSEGSKFIQFIPLVESDNRGDSLLEFSVTAEEYGQFLI 217 (378)
T ss_pred -hHhhCHHHHHHHHHHcccceEEEEecccCCCCCccccccccCHHHHHHHHH
Confidence 4677888999999888854 7777766553222 112345666555544
No 46
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=99.84 E-value=3.1e-19 Score=159.74 Aligned_cols=206 Identities=20% Similarity=0.352 Sum_probs=135.7
Q ss_pred CCceEEEEeccCCcCccCccccCCCCCCcc-CCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHH-HHHHHHHHhCC
Q 023640 18 GPRSTLCISSQVGCKMGCNFCATGTMGFKS-NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAA-LVEAVRIMTGL 95 (279)
Q Consensus 18 ~~~~~l~i~~~~gCNl~C~yC~~~~~~~~~-~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~-i~~~i~~~~~~ 95 (279)
..| ++++ +|.+||++|+||++......+ ..+.+++.+.+..+....++..|.||| ||||++++. +.++++.+...
T Consensus 95 ~~r-~l~~-~t~~Cn~~Cr~C~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~~VvltG-GEPL~~~d~~L~~ll~~l~~i 171 (321)
T TIGR03821 95 HGR-VLLI-VTGGCAINCRYCFRRHFPYQENQPNKAQWKEALEYIAQHPEINEVILSG-GDPLMAKDHRLDWLLNLLEQI 171 (321)
T ss_pred CCE-EEEE-eCCCcCCcCcCCCCCCcCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeC-cccccCCchHHHHHHHHHHhC
Confidence 445 5554 689999999999986433222 345555555555555445789999999 999998553 77777776654
Q ss_pred CCCCCCCeEEEEc-------CCchhhhHH-HhccCCCceE-EEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhC
Q 023640 96 PFQVSPKRITVST-------VGIVHAINK-FHSDLPGLNL-AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 166 (279)
Q Consensus 96 g~~~~~~~v~i~T-------NG~~~~~~~-l~~~~~~~~i-~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~ 166 (279)
.. ...+.|.| |-......+ +.... ...+ .+|+|++. ++++ .+.+++ +.+++.|
T Consensus 172 ~~---~~~iri~tr~~~~~p~rit~el~~~L~~~~-~~~~~~~h~dh~~-Ei~d------------~~~~ai-~~L~~~G 233 (321)
T TIGR03821 172 PH---LKRLRIHTRLPVVIPDRITSGLCDLLANSR-LQTVLVVHINHAN-EIDA------------EVADAL-AKLRNAG 233 (321)
T ss_pred CC---CcEEEEecCcceeeHHHhhHHHHHHHHhcC-CcEEEEeeCCChH-hCcH------------HHHHHH-HHHHHcC
Confidence 20 12444444 311112222 32322 1223 36898874 5443 356677 4567889
Q ss_pred CeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHh---cCCeEEEeccc
Q 023640 167 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG---SYNIRTTVRKQ 242 (279)
Q Consensus 167 ~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~---~~gi~v~vr~~ 242 (279)
..+..++++++|+||+.+++.++.+.+.++|+. +.+..+.|.+....+ ..+.++..++.+.+.+ .+.++..++..
T Consensus 234 i~v~~qtvllkgiNDn~~~l~~L~~~l~~~gv~pyyl~~~~p~gg~~~f-~v~~~~~~~i~~~l~~~~sG~~~P~~v~d~ 312 (321)
T TIGR03821 234 ITLLNQSVLLRGVNDNADTLAALSERLFDAGVLPYYLHLLDKVQGAAHF-DVDDERARALMAELLARLPGYLVPRLVREI 312 (321)
T ss_pred CEEEecceeeCCCCCCHHHHHHHHHHHHHcCCeeCcccccCCCCCcccc-cCCHHHHHHHHHHHHHhCCCCccceeEEEc
Confidence 999999999999999999999999999999987 667777887643444 4677777776666552 34455666665
Q ss_pred ccc
Q 023640 243 MGQ 245 (279)
Q Consensus 243 ~g~ 245 (279)
.|.
T Consensus 313 pg~ 315 (321)
T TIGR03821 313 PGE 315 (321)
T ss_pred CCC
Confidence 543
No 47
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=99.83 E-value=1.7e-18 Score=155.66 Aligned_cols=202 Identities=17% Similarity=0.296 Sum_probs=132.3
Q ss_pred EEeccCCcCccCccccCCCCCCccCC-CHHHHHHHHHHHhccCCCceEEEecCCccccCHH-HHHHHHHHHhCCCCCCCC
Q 023640 24 CISSQVGCKMGCNFCATGTMGFKSNL-SSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYA-ALVEAVRIMTGLPFQVSP 101 (279)
Q Consensus 24 ~i~~~~gCNl~C~yC~~~~~~~~~~~-~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~-~i~~~i~~~~~~g~~~~~ 101 (279)
.+.+|.|||++|+||+.......... ..+++.+.+..+....++..|.||| ||||+..+ .+.++++.+++.+ .+..
T Consensus 116 ll~~T~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~eV~lsG-GDPLl~~d~~L~~ll~~L~~i~-~~~~ 193 (331)
T TIGR00238 116 LFLVKGGCAVNCRYCFRRHFPYKENPGNKKKWQKALDYIAEHPEIIEILISG-GDPLMAKDHELEWLLKRLEEIP-HLVR 193 (331)
T ss_pred EEEeCCCCCCCCcCCCCCCcCCCCCCccHHHHHHHHHHHHhCCCcCEEEEEC-CccccCCHHHHHHHHHHHHhcC-CccE
Confidence 34457999999999998543222112 2456666565555445789999999 99999754 4888898888762 1222
Q ss_pred CeEEEEcCCchhh-----hHHHhccCCCceE-EEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEE
Q 023640 102 KRITVSTVGIVHA-----INKFHSDLPGLNL-AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM 175 (279)
Q Consensus 102 ~~v~i~TNG~~~~-----~~~l~~~~~~~~i-~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv 175 (279)
+++...|+++++. +.++++.. ...+ .++.+...++++ +.+.+++ +.+.++|..+.+++++
T Consensus 194 IRi~tr~~~~~P~rit~el~~~L~~~-~~~~~~vsh~nh~~Ei~------------~~~~~ai-~~L~~aGi~v~~qtvL 259 (331)
T TIGR00238 194 LRIGTRLPVVIPQRITDELCELLASF-ELQLMLVTHINHCNEIT------------EEFAEAM-KKLRTVNVTLLNQSVL 259 (331)
T ss_pred EEeecCCCccCchhcCHHHHHHHHhc-CCcEEEEccCCChHhCC------------HHHHHHH-HHHHHcCCEEEeecce
Confidence 4455555665421 22222222 2333 355444333322 4667888 4567889999999999
Q ss_pred eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHh---cCCeEEEeccc
Q 023640 176 LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG---SYNIRTTVRKQ 242 (279)
Q Consensus 176 ~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~---~~gi~v~vr~~ 242 (279)
++|+||+.+.+.++.+.+.++|+. +.+..+.|.+....+. .+.++..++.+.+.+ .+.++..++..
T Consensus 260 l~gvnD~~~~l~~L~~~l~~~gV~pyyl~~~~~~~g~~~f~-~~~~~~~~i~~~l~~~~sG~~~P~~v~~~ 329 (331)
T TIGR00238 260 LRGVNDRAQILAKLSIALFKVGIIPYYLHYLDKVQGAKHFL-VPDAEAAQIVKELARLTSGYLVPKFAVEI 329 (331)
T ss_pred ECCcCCCHHHHHHHHHHHhhcCeecCeecCcCCCCCccccc-CCHHHHHHHHHHHHhcCCCCcceeEEecC
Confidence 999999999999999999999986 6677778876544554 566666666655552 33445555543
No 48
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=99.82 E-value=3.3e-18 Score=154.76 Aligned_cols=195 Identities=19% Similarity=0.254 Sum_probs=144.2
Q ss_pred CCceEEEEeccCCcCccCccccCCCCCC-ccCCCHHHHHHHHHHHhccCC-CceEEEecCCccccCHHHHHHHHHHHhCC
Q 023640 18 GPRSTLCISSQVGCKMGCNFCATGTMGF-KSNLSSGEIVEQLVHASRLSN-IRNVVFMGMGEPLNNYAALVEAVRIMTGL 95 (279)
Q Consensus 18 ~~~~~l~i~~~~gCNl~C~yC~~~~~~~-~~~~~~~ei~~~i~~~~~~~~-~~~I~fsG~GEPll~~~~i~~~i~~~~~~ 95 (279)
..+..+.+.+|..||++|.||+.+.... ...++.++..+.+.++... + ...+.|+| |||+++ +.+.++++.+++.
T Consensus 16 ~~p~~~~~~~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~~~~~~~~~~-g~~~~v~~~g-GEPll~-~d~~ei~~~~~~~ 92 (347)
T COG0535 16 KPPLVVGIELTNRCNLACKHCYAEAGKKLPGELSTEEDLRVIDELAEL-GEIPVVIFTG-GEPLLR-PDLLEIVEYARKK 92 (347)
T ss_pred cCCcEEEEeeccccCCcCcccccccCCCCccccCHHHHHHHHHHHHHc-CCeeEEEEeC-CCcccc-ccHHHHHHHHhhc
Confidence 4566788888999999999999865543 5677888887666666543 4 78899999 999999 6788999999966
Q ss_pred -CCCCCCCeEEEEcCCchh--h-hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEE
Q 023640 96 -PFQVSPKRITVSTVGIVH--A-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 171 (279)
Q Consensus 96 -g~~~~~~~v~i~TNG~~~--~-~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i 171 (279)
+ ..+++.|||++. . .+++.+.+ ...+.||+|+.+++.|+.+++. .+.++.++++++ .+++.|..+.+
T Consensus 93 ~~-----~~~~~~TnG~~~~~~~~~~l~~~g-~~~v~iSid~~~~e~hd~~rg~--~g~~~~~~~~i~-~~~~~g~~~~~ 163 (347)
T COG0535 93 GG-----IRVSLSTNGTLLTEEVLEKLKEAG-LDYVSISLDGLDPETHDPIRGV--KGVFKRAVEAIK-NLKEAGILVVI 163 (347)
T ss_pred CC-----eEEEEeCCCccCCHHHHHHHHhcC-CcEEEEEecCCChhhhhhhcCC--CcHHHHHHHHHH-HHHHcCCeeeE
Confidence 5 799999999543 2 33344433 3568899999999998887643 478999999994 55577777777
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCC--cCCCCHHHHHHHHH
Q 023640 172 EYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQ--FRTSSDDKVSSFQK 227 (279)
Q Consensus 172 ~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~--~~~~~~e~l~~~~~ 227 (279)
++++.+. +.+++.++++++.++++. +.+.++.|.+.... ....+.++.+.+..
T Consensus 164 ~~~v~~~---n~~~l~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 219 (347)
T COG0535 164 NTTVTKI---NYDELPEIADLAAELGVDELNVFPLIPVGRGEENLELDLTPEEEELLLV 219 (347)
T ss_pred EEEEecC---cHHHHHHHHHHHHHcCCCEEEEEEEeecccccccccccCCHHHHHHHHH
Confidence 7777643 567899999999999965 67777777664333 23445554444433
No 49
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.81 E-value=1.8e-18 Score=144.97 Aligned_cols=181 Identities=16% Similarity=0.199 Sum_probs=131.3
Q ss_pred EEEEeccCCcCccCccccCCCCC-CccCCCHHHHHHHHHHHhcc---C-CCceEEEecCCccccCHH-HHHHHHHHHhCC
Q 023640 22 TLCISSQVGCKMGCNFCATGTMG-FKSNLSSGEIVEQLVHASRL---S-NIRNVVFMGMGEPLNNYA-ALVEAVRIMTGL 95 (279)
Q Consensus 22 ~l~i~~~~gCNl~C~yC~~~~~~-~~~~~~~~ei~~~i~~~~~~---~-~~~~I~fsG~GEPll~~~-~i~~~i~~~~~~ 95 (279)
++++.++.|||++|.||+.+... .....+++++.+.+.+.... . .+..+.|+| |||+++++ .+.++++.+++.
T Consensus 2 ~~~i~~t~~C~~~C~yC~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~g-g~~~~~~~~~~~~~~~~~~~~ 80 (216)
T smart00729 2 LALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKEILVGTVFIGG-GTPTLLSPEQLEELLEAIREI 80 (216)
T ss_pred ccEEEecCchhccCCcCCcCccccchhHHHHHHHHHHHHHHHhcccCCcceeEEEECC-CCCCCCCHHHHHHHHHHHHHh
Confidence 35566689999999999985431 14556778888888776321 1 147899999 99999865 488888888876
Q ss_pred CCCCCCCeEEEEcCCchhh---hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEE
Q 023640 96 PFQVSPKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 172 (279)
Q Consensus 96 g~~~~~~~v~i~TNG~~~~---~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~ 172 (279)
+.......+.+.|||...+ ++.+.+.+ ...+.+|+++.+++.++.+.+ ..+++.+++++ +.+++.|. +.+.
T Consensus 81 ~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~-~~~i~isl~~~~~~~~~~~~~---~~~~~~~~~~i-~~~~~~g~-~~v~ 154 (216)
T smart00729 81 LGLADDVEITIETRPGTLTEELLEALKEAG-VNRVSLGVQSGSDEVLKAINR---GHTVEDVLEAV-EKLREAGP-IKVS 154 (216)
T ss_pred CCCCCCeEEEEEeCcccCCHHHHHHHHHcC-CCeEEEecccCCHHHHHHhcC---CCCHHHHHHHH-HHHHHhCC-cceE
Confidence 3100136789999976443 44455543 236889999999999988643 46789999999 45667773 4445
Q ss_pred EEEeCCCC-CcHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 023640 173 YIMLDGVN-DEEQHAHQLGKLLETFQVV-VNLIPFNPIG 209 (279)
Q Consensus 173 ~vv~~g~n-d~~~~l~~l~~~l~~~~~~-i~l~~~~p~~ 209 (279)
+.++.|++ ++.+++.++++++.+.++. +.+.++.|.+
T Consensus 155 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 193 (216)
T smart00729 155 TDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRP 193 (216)
T ss_pred EeEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeCC
Confidence 55555654 7889999999999999986 8888888873
No 50
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=99.79 E-value=1.8e-17 Score=142.60 Aligned_cols=133 Identities=17% Similarity=0.312 Sum_probs=95.3
Q ss_pred ceEEEEeccCCcCccCccccCCCC---CC---ccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHh
Q 023640 20 RSTLCISSQVGCKMGCNFCATGTM---GF---KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT 93 (279)
Q Consensus 20 ~~~l~i~~~~gCNl~C~yC~~~~~---~~---~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~ 93 (279)
+.++|+.+ .|||++|.||++... .. ...++.+++++.+.+... .++..|+||| ||||++ +.+.++++.++
T Consensus 22 ~~~~FvR~-~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~-~~~~~V~lTG-GEPll~-~~l~~li~~l~ 97 (238)
T TIGR03365 22 QKTMFVRT-GGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGG-GTPLHVSLSG-GNPALQ-KPLGELIDLGK 97 (238)
T ss_pred CeEEEEEe-CCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhC-CCCCeEEEeC-Cchhhh-HhHHHHHHHHH
Confidence 44667653 799999999997431 11 124889999999887653 3578999999 999998 57899999999
Q ss_pred CCCCCCCCCeEEEEcCCchhhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEE
Q 023640 94 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 173 (279)
Q Consensus 94 ~~g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~ 173 (279)
+.| ..+.|.|||+++. .++... ..+.+|+|+++... ...++...++++ .+.+ +.++.+.+
T Consensus 98 ~~g-----~~v~leTNGtl~~--~~l~~~--d~v~vs~K~~~sg~---------~~~~~~~~~~ik-~l~~-~~~~~vK~ 157 (238)
T TIGR03365 98 AKG-----YRFALETQGSVWQ--DWFRDL--DDLTLSPKPPSSGM---------ETDWQALDDCIE-RLDD-GPQTSLKV 157 (238)
T ss_pred HCC-----CCEEEECCCCCcH--HHHhhC--CEEEEeCCCCCCCC---------CCcHHHHHHHHH-Hhhh-cCceEEEE
Confidence 998 6899999999754 222221 14668998765411 123666677774 3333 46788998
Q ss_pred EEe
Q 023640 174 IML 176 (279)
Q Consensus 174 vv~ 176 (279)
++.
T Consensus 158 Vv~ 160 (238)
T TIGR03365 158 VVF 160 (238)
T ss_pred EEC
Confidence 886
No 51
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.79 E-value=2.1e-18 Score=136.17 Aligned_cols=157 Identities=18% Similarity=0.267 Sum_probs=118.2
Q ss_pred CCcCccCccccCCCCC-----CccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCe
Q 023640 29 VGCKMGCNFCATGTMG-----FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKR 103 (279)
Q Consensus 29 ~gCNl~C~yC~~~~~~-----~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~ 103 (279)
.|||++|.||+++... .+..++|+|+++.+.++++..|.+.|-+|| |||++.++++.++|+.+.+. .
T Consensus 49 VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG-~EP~l~~EHvlevIeLl~~~-------t 120 (228)
T COG5014 49 VGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISG-AEPILGREHVLEVIELLVNN-------T 120 (228)
T ss_pred cccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEeeC-CCccccHHHHHHHHHhccCc-------e
Confidence 7999999999995321 245689999999999988777889999999 99999999999999998654 7
Q ss_pred EEEEcCCchhh-hHHHhccC---CCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCC
Q 023640 104 ITVSTVGIVHA-INKFHSDL---PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV 179 (279)
Q Consensus 104 v~i~TNG~~~~-~~~l~~~~---~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~ 179 (279)
..+.|||+... ...+.+++ +.+.+.+|+++++++.+.+|++.++.+ |...++++ +++.+.|.+++... +.++
T Consensus 121 FvlETNG~~~g~drslv~el~nr~nv~vRVsvKG~dpesF~kIT~asp~~-F~~QL~aL-r~L~~~g~rf~pA~--~~~f 196 (228)
T COG5014 121 FVLETNGLMFGFDRSLVDELVNRLNVLVRVSVKGWDPESFEKITGASPEY-FRYQLKAL-RHLHGKGHRFWPAV--VYDF 196 (228)
T ss_pred EEEEeCCeEEecCHHHHHHHhcCCceEEEEEecCCCHHHHHHHhcCChHH-HHHHHHHH-HHHHhcCceeeehh--hhcc
Confidence 89999998653 22333332 346677999999999999998655444 88899999 56666666655433 3333
Q ss_pred CCcHHHHHHHHHHHhhCCc
Q 023640 180 NDEEQHAHQLGKLLETFQV 198 (279)
Q Consensus 180 nd~~~~l~~l~~~l~~~~~ 198 (279)
. .++...++++.+.++++
T Consensus 197 ~-~Ed~~k~Lak~Lgehp~ 214 (228)
T COG5014 197 F-REDGLKELAKRLGEHPP 214 (228)
T ss_pred c-hhhhHHHHHHHhccCCC
Confidence 2 33445669988887654
No 52
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=99.78 E-value=9.2e-17 Score=146.72 Aligned_cols=197 Identities=18% Similarity=0.164 Sum_probs=134.8
Q ss_pred ccCCcCccCccccCCCC--CCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHH-HHHHHHHHHhCC-CCCCCCC
Q 023640 27 SQVGCKMGCNFCATGTM--GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYA-ALVEAVRIMTGL-PFQVSPK 102 (279)
Q Consensus 27 ~~~gCNl~C~yC~~~~~--~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~-~i~~~i~~~~~~-g~~~~~~ 102 (279)
+|.+||++|+||+.... .....++.+++.+.+..+....++..|.||| ||||+..+ .+..+++.+++. ++ .
T Consensus 114 vT~~C~~~CryC~R~~~~g~~~~~ls~eei~~~i~yI~~~p~I~~VlLSG-GDPLll~d~~L~~iL~~L~~IphV----~ 188 (417)
T TIGR03820 114 VSNTCAMYCRHCTRKRKVGDRDSIPSKEQILEGIEYIRNTPQIRDVLLSG-GDPLLLSDDYLDWILTELRAIPHV----E 188 (417)
T ss_pred EcCCcCCCCcCCCCcccCCcccccCCHHHHHHHHHHHHhcCCCCEEEEeC-CccccCChHHHHHHHHHHhhcCCC----c
Confidence 47999999999998542 1234567788777777666556789999999 99999755 455667888876 31 3
Q ss_pred eEEEEcC-----Cchhh--hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEE
Q 023640 103 RITVSTV-----GIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM 175 (279)
Q Consensus 103 ~v~i~TN-----G~~~~--~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv 175 (279)
.+.+.|+ +...+ +.++++....+.+.++++++. ++ ++.+++++ +.++++|+.+..++++
T Consensus 189 ~IRI~TR~pvv~P~RIT~ell~~Lk~~~~~~v~~h~nhp~-Ei------------t~~a~~Al-~~L~~aGI~l~nQsVL 254 (417)
T TIGR03820 189 VIRIGTRVPVVLPQRITDELVAILKKHHPVWLNTHFNHPR-EI------------TASSKKAL-AKLADAGIPLGNQSVL 254 (417)
T ss_pred eEEEeeccccccccccCHHHHHHHHhcCCeEEEEeCCChH-hC------------hHHHHHHH-HHHHHcCCEEEeeceE
Confidence 4888888 43322 222222222344557777763 22 46888899 5567899999999999
Q ss_pred eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHh---cCCeEEEecccc
Q 023640 176 LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG---SYNIRTTVRKQM 243 (279)
Q Consensus 176 ~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~---~~gi~v~vr~~~ 243 (279)
++|+||+.+-+.+|.+.+.++++. ..+....+.. +...-..+.++-.++.+.++. .+.++..+....
T Consensus 255 LkGVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~-G~~hFrv~~~~g~~I~~~lr~~~sG~~vP~~v~d~p 325 (417)
T TIGR03820 255 LAGVNDCPRIMKKLVHKLVANRVRPYYLYQCDLSE-GLSHFRTPVGKGIEIIESLIGHTSGFAVPTYVVDAP 325 (417)
T ss_pred ECCcCCCHHHHHHHHHHHHHCCCeeceeeeccCCC-CcccccCcHHHHHHHHHHHHHhCCCCCceEEEEecC
Confidence 999999999999999999888886 4455555653 333334566666666666652 233455555443
No 53
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.77 E-value=2.2e-17 Score=132.80 Aligned_cols=156 Identities=21% Similarity=0.357 Sum_probs=113.6
Q ss_pred ccCCcCccCccccCCC---CCCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCe
Q 023640 27 SQVGCKMGCNFCATGT---MGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKR 103 (279)
Q Consensus 27 ~~~gCNl~C~yC~~~~---~~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~ 103 (279)
++.|||++|.||+.+. ......++++++.+.+.+.....++..|.|+| |||+++++.. +++..+.+.. .....
T Consensus 3 ~~~~C~~~C~fC~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~-gep~~~~~~~-~~~~~~~~~~--~~~~~ 78 (166)
T PF04055_consen 3 TTRGCNLNCSFCYYPRSRRKNKPREMSPEEILEEIKELKQDKGVKEIFFGG-GEPTLHPDFI-ELLELLRKIK--KRGIR 78 (166)
T ss_dssp EESEESS--TTTSTTTTCCTCGCEECHHHHHHHHHHHHHHHTTHEEEEEES-STGGGSCHHH-HHHHHHHHCT--CTTEE
T ss_pred ECcCcCccCCCCCCCccCCCcccccCCHHHHHHHHHHHhHhcCCcEEEEee-cCCCcchhHH-HHHHHHHHhh--ccccc
Confidence 4689999999999865 23456788999999999884223588999999 9999996654 5554444330 01279
Q ss_pred EEEEcCCchhh---hHHHhccCCCceEEEEeCCCCHH-HHhhhcCCCCCCCHHHHHHHHHHHHHhhCCe-EEEEEEEeCC
Q 023640 104 ITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQD-VRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDG 178 (279)
Q Consensus 104 v~i~TNG~~~~---~~~l~~~~~~~~i~iSld~~~~~-~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~-v~i~~vv~~g 178 (279)
+.+.|||...+ ++.+.+.. ...+.+++++.+++ .++.+. +..+++++++++ +.++++|.. +...+++.|+
T Consensus 79 i~~~t~~~~~~~~~l~~l~~~~-~~~i~~~l~s~~~~~~~~~~~---~~~~~~~~~~~l-~~l~~~g~~~~~~~i~~~~~ 153 (166)
T PF04055_consen 79 ISINTNGTLLDEELLDELKKLG-VDRIRISLESLDEESVLRIIN---RGKSFERVLEAL-ERLKEAGIPRVIIFIVGLPG 153 (166)
T ss_dssp EEEEEESTTHCHHHHHHHHHTT-CSEEEEEEBSSSHHHHHHHHS---STSHHHHHHHHH-HHHHHTTSETEEEEEEEBTT
T ss_pred eeeeccccchhHHHHHHHHhcC-ccEEecccccCCHHHhhhhhc---CCCCHHHHHHHH-HHHHHcCCCcEEEEEEEeCC
Confidence 99999998753 34455543 35688999999998 777664 346899999999 556778777 7777888887
Q ss_pred CCCcHHHHHHHHHHH
Q 023640 179 VNDEEQHAHQLGKLL 193 (279)
Q Consensus 179 ~nd~~~~l~~l~~~l 193 (279)
. +.+++.++++++
T Consensus 154 ~--~~~e~~~~~~~i 166 (166)
T PF04055_consen 154 E--NDEEIEETIRFI 166 (166)
T ss_dssp T--SHHHHHHHHHHH
T ss_pred C--CHHHHHHHhCcC
Confidence 5 557889998875
No 54
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.75 E-value=1.3e-16 Score=132.01 Aligned_cols=172 Identities=23% Similarity=0.309 Sum_probs=122.4
Q ss_pred ccCCcCccCccccCCCCCCccCCCH---HHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCe
Q 023640 27 SQVGCKMGCNFCATGTMGFKSNLSS---GEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKR 103 (279)
Q Consensus 27 ~~~gCNl~C~yC~~~~~~~~~~~~~---~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~ 103 (279)
++.|||++|.||+............ +++.+.+..... .+...+.|+| |||++++ .+.++++.+++.. +...
T Consensus 3 ~~~~C~~~C~fC~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~g-gep~~~~-~~~~~i~~~~~~~---~~~~ 76 (204)
T cd01335 3 LTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAKE-RGVEVVILTG-GEPLLYP-ELAELLRRLKKEL---PGFE 76 (204)
T ss_pred cCCccCCcCCCCCCCCCCCCCccccccHHHHHHHHHHHHh-cCceEEEEeC-CcCCccH-hHHHHHHHHHhhC---CCce
Confidence 4589999999999865433222222 233333333332 3678899999 9999986 7889999999871 1278
Q ss_pred EEEEcCCchh--h-hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCC
Q 023640 104 ITVSTVGIVH--A-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVN 180 (279)
Q Consensus 104 v~i~TNG~~~--~-~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~n 180 (279)
+.+.|||... . ++.+.+.+ ...+.+|+++.++..++.+. .+..++++++++++. +.+.+..+.+.+++..+.+
T Consensus 77 ~~i~T~~~~~~~~~~~~l~~~g-~~~i~i~le~~~~~~~~~~~--~~~~~~~~~~~~i~~-~~~~~~~~~~~~i~g~~~~ 152 (204)
T cd01335 77 ISIETNGTLLTEELLKELKELG-LDGVGVSLDSGDEEVADKIR--GSGESFKERLEALKE-LREAGLGLSTTLLVGLGDE 152 (204)
T ss_pred EEEEcCcccCCHHHHHHHHhCC-CceEEEEcccCCHHHHHHHh--cCCcCHHHHHHHHHH-HHHcCCCceEEEEEecCCC
Confidence 9999999762 2 44455542 35688999999999888875 235789999999954 5566888888888776644
Q ss_pred CcHHHHHHHHHHHhhCC-cE-EEEEecCCCC
Q 023640 181 DEEQHAHQLGKLLETFQ-VV-VNLIPFNPIG 209 (279)
Q Consensus 181 d~~~~l~~l~~~l~~~~-~~-i~l~~~~p~~ 209 (279)
+ .+++.+.++++.+.+ +. +.+.++.|.+
T Consensus 153 ~-~~~~~~~~~~l~~~~~~~~~~~~~~~p~~ 182 (204)
T cd01335 153 D-EEDDLEELELLAEFRSPDRVSLFRLLPEE 182 (204)
T ss_pred h-hHHHHHHHHHHHhhcCcchhhhhhhcccC
Confidence 3 467788888887776 54 7778888874
No 55
>PRK07094 biotin synthase; Provisional
Probab=99.69 E-value=9.8e-15 Score=131.40 Aligned_cols=192 Identities=16% Similarity=0.216 Sum_probs=139.2
Q ss_pred EEeccCCcCccCccccCCCCCC--c-cCCCHHHHHHHHHHHhccCCCceEEEecCCc-cccCHHHHHHHHHHHhCC-CCC
Q 023640 24 CISSQVGCKMGCNFCATGTMGF--K-SNLSSGEIVEQLVHASRLSNIRNVVFMGMGE-PLNNYAALVEAVRIMTGL-PFQ 98 (279)
Q Consensus 24 ~i~~~~gCNl~C~yC~~~~~~~--~-~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GE-Pll~~~~i~~~i~~~~~~-g~~ 98 (279)
.+..+.+||++|.||..+.... . ..++++++++.+..... .|+..|.|+| |+ |.+..+.+.++++.+++. +
T Consensus 42 ~i~~s~gC~~~C~fC~~~~~~~~~~r~~ls~eei~~~~~~~~~-~g~~~i~l~g-G~~~~~~~~~l~~l~~~i~~~~~-- 117 (323)
T PRK07094 42 LIEFSNYCRNNCLYCGLRRDNKNIERYRLSPEEILECAKKAYE-LGYRTIVLQS-GEDPYYTDEKIADIIKEIKKELD-- 117 (323)
T ss_pred EEEECCCCCCCCEeCCcccCCCCCcCcCCCHHHHHHHHHHHHH-CCCCEEEEec-CCCCCCCHHHHHHHHHHHHccCC--
Confidence 3455799999999998753211 1 23689999999887765 4889999999 96 666678899999999985 4
Q ss_pred CCCCeEEEEcCCchhh-hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeC
Q 023640 99 VSPKRITVSTVGIVHA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLD 177 (279)
Q Consensus 99 ~~~~~v~i~TNG~~~~-~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~ 177 (279)
..+.+.+...... +..+.+.+ ...+.+++++.+++.++.+.+ ..++++.++++ +.+++.|..+...+++
T Consensus 118 ---l~i~~~~g~~~~e~l~~Lk~aG-~~~v~~glEs~~~~~~~~i~~---~~s~~~~~~~i-~~l~~~Gi~v~~~~ii-- 187 (323)
T PRK07094 118 ---VAITLSLGERSYEEYKAWKEAG-ADRYLLRHETADKELYAKLHP---GMSFENRIACL-KDLKELGYEVGSGFMV-- 187 (323)
T ss_pred ---ceEEEecCCCCHHHHHHHHHcC-CCEEEeccccCCHHHHHHhCC---CCCHHHHHHHH-HHHHHcCCeecceEEE--
Confidence 4565544322222 44566654 345678999999999999864 46899999999 5677888876655554
Q ss_pred CC-CCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCc---CCCCHHHHHHHHHHHH
Q 023640 178 GV-NDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQF---RTSSDDKVSSFQKILR 230 (279)
Q Consensus 178 g~-nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~---~~~~~e~l~~~~~~l~ 230 (279)
|+ .++.+++.+.++++.++++. +.+.+|.|. +++.+ .+++.++..++...++
T Consensus 188 Glpget~ed~~~~l~~l~~l~~~~v~~~~~~P~-pgTpl~~~~~~~~~~~~~~~a~~R 244 (323)
T PRK07094 188 GLPGQTLEDLADDILFLKELDLDMIGIGPFIPH-PDTPLKDEKGGSLELTLKVLALLR 244 (323)
T ss_pred ECCCCCHHHHHHHHHHHHhCCCCeeeeeccccC-CCCCcccCCCCCHHHHHHHHHHHH
Confidence 33 46789999999999999875 778888887 34433 3456777666666555
No 56
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=99.67 E-value=6.4e-16 Score=122.90 Aligned_cols=97 Identities=22% Similarity=0.309 Sum_probs=78.2
Q ss_pred CCCCCCccccCccCCCCCceEEEEeccCCcCccCccccCCCC---CCccCCCHHHHHHHHHHHhccCCCceEEEecCCcc
Q 023640 2 RYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEP 78 (279)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~~~l~i~~~~gCNl~C~yC~~~~~---~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEP 78 (279)
+|-.+++.... +|+..+.++|+ +|||++|+||+++.. ..+..++.+++++.+.+... .+..|+||| ||
T Consensus 1 ~~~~~~~~~~d--~p~~~~~~vfl---~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~~--~~~gVt~SG-GE- 71 (147)
T TIGR02826 1 MYINEIIVFQE--VPNEYSLAFYI---TGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYRS--LISCVLFLG-GE- 71 (147)
T ss_pred CcccceEEEee--cCCCEEEEEEe---CCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhCC--CCCEEEEec-hh-
Confidence 35555553333 89999999999 899999999999533 22467999999999887653 357999999 99
Q ss_pred ccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchh
Q 023640 79 LNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH 113 (279)
Q Consensus 79 ll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~ 113 (279)
++++++.++++.+++.| .++.+.||++.+
T Consensus 72 -l~~~~l~~ll~~lk~~G-----l~i~l~Tg~~~~ 100 (147)
T TIGR02826 72 -WNREALLSLLKIFKEKG-----LKTCLYTGLEPK 100 (147)
T ss_pred -cCHHHHHHHHHHHHHCC-----CCEEEECCCCCH
Confidence 56788999999999998 689999998764
No 57
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=99.67 E-value=2.7e-16 Score=126.56 Aligned_cols=113 Identities=19% Similarity=0.254 Sum_probs=76.4
Q ss_pred CCCCCceEEEEeccCCcCccCccccCCCC---CCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCH--HHHHHHH
Q 023640 15 RPGGPRSTLCISSQVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNY--AALVEAV 89 (279)
Q Consensus 15 ~p~~~~~~l~i~~~~gCNl~C~yC~~~~~---~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~--~~i~~~i 89 (279)
...+.|.++|+ +|||++|+||+++.. ..+..++.+++.+.+.++.....+..|+|+| ||||+++ +++.+++
T Consensus 12 dG~G~r~~if~---~gCnl~C~~C~n~~~~~~~~g~~~~~~~~~~i~~~l~~~~~~~gVt~sG-GEPllq~~~~~l~~ll 87 (154)
T TIGR02491 12 NGEGIRVSLFV---AGCKHHCEGCFNKETWNFNGGKEFTEALEKEIIRDLNDNPLIDGLTLSG-GDPLYPRNVEELIELV 87 (154)
T ss_pred cCCCcEEEEEE---CCCCCCCcCCCcccccCCCCCCcCCHHHHHHHHHHHHhcCCcCeEEEeC-hhhCCCCCHHHHHHHH
Confidence 44568999998 899999999999643 2346788555544444444322357899999 9999975 8899999
Q ss_pred HHHhCC-CCCCCCCeEEEEcCCchhh-hHH---HhccCCCceEEEEeCCCCH
Q 023640 90 RIMTGL-PFQVSPKRITVSTVGIVHA-INK---FHSDLPGLNLAVSLHAPVQ 136 (279)
Q Consensus 90 ~~~~~~-g~~~~~~~v~i~TNG~~~~-~~~---l~~~~~~~~i~iSld~~~~ 136 (279)
+.+++. + .++.+.|||+... ..+ ..+....+|+.++.+..++
T Consensus 88 ~~~k~~~~-----~~~~~~~tG~~~~~~~~~~~~~~~l~~~D~liDgk~~~~ 134 (154)
T TIGR02491 88 KKIKAEFP-----EKDIWLWTGYTWEEILEDEKHLEVLKYIDVLVDGKFELS 134 (154)
T ss_pred HHHHHhCC-----CCCEEEeeCccHHHHhcchhHHHHHhhCCEEEechhhhh
Confidence 999976 4 4567779997643 110 0122334676666654444
No 58
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=99.63 E-value=6.5e-16 Score=122.02 Aligned_cols=88 Identities=31% Similarity=0.552 Sum_probs=58.7
Q ss_pred CCceEEEEeccCCcCccCccccCCCCC---CccCCCHHHHHHHHHHHhccCCCceEEEecCCcccc--CHHHHHHHHHHH
Q 023640 18 GPRSTLCISSQVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLN--NYAALVEAVRIM 92 (279)
Q Consensus 18 ~~~~~l~i~~~~gCNl~C~yC~~~~~~---~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll--~~~~i~~~i~~~ 92 (279)
+.+.++|. .+||++|.||+++... ....++ .+.++.+.+.....++..|.|+| |||++ +++.+.++++.+
T Consensus 5 g~~~~~~t---~~Cnl~C~yC~~~~~~~~~~~~~~~-~~~~~~ii~~~~~~~~~~i~l~G-GEPll~~~~~~l~~i~~~~ 79 (139)
T PF13353_consen 5 GIRVVLFT---NGCNLRCKYCFNSEIWKFKRGKELS-EEIIEEIIEELKNYGIKGIVLTG-GEPLLHENYDELLEILKYI 79 (139)
T ss_dssp SCEEEEEE---C--SB--TT-TTCCCS-TT-SEEC--HHHHHHHCHHHCCCCCCEEEEEC-STGGGHHSHHHHHHHHHHH
T ss_pred CEEEEEEc---CcccccCcCcCCcccCccccccccc-chhhhhhhhHHhcCCceEEEEcC-CCeeeeccHhHHHHHHHHH
Confidence 46777775 7899999999985432 233455 45555554443335789999999 99999 789999999999
Q ss_pred hCCCCCCCCCeEEEEcCCchhh
Q 023640 93 TGLPFQVSPKRITVSTVGIVHA 114 (279)
Q Consensus 93 ~~~g~~~~~~~v~i~TNG~~~~ 114 (279)
++.+. ..+.+.|||+...
T Consensus 80 k~~~~----~~~~~~tng~~~~ 97 (139)
T PF13353_consen 80 KEKFP----KKIIILTNGYTLD 97 (139)
T ss_dssp HHTT-----SEEEEEETT--HH
T ss_pred HHhCC----CCeEEEECCCchh
Confidence 99861 3789999997654
No 59
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.63 E-value=6.6e-14 Score=128.03 Aligned_cols=196 Identities=12% Similarity=0.110 Sum_probs=143.4
Q ss_pred EeccCCcCccCccccCCCC--CCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccC--HHHHHHHHHHHhCCCCCCC
Q 023640 25 ISSQVGCKMGCNFCATGTM--GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN--YAALVEAVRIMTGLPFQVS 100 (279)
Q Consensus 25 i~~~~gCNl~C~yC~~~~~--~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~--~~~i~~~i~~~~~~g~~~~ 100 (279)
++.|++|+.+|.||..... .....++++++++.+..+.. .|++.|.|+| ||+... .+.+.++++.+++.-
T Consensus 78 in~Tn~C~~~C~YC~f~~~~~~~~~~ls~eEI~~~a~~~~~-~Gv~~i~lvg-Ge~p~~~~~e~l~~~i~~Ik~~~---- 151 (371)
T PRK09240 78 LYLSNYCANDCTYCGFSMSNKIKRKTLDEEEIEREMAAIKK-LGFEHILLLT-GEHEAKVGVDYIRRALPIAREYF---- 151 (371)
T ss_pred eEEcccccCcCCcCCCCCCCCCccccCCHHHHHHHHHHHHh-CCCCEEEEee-CCCCCCCCHHHHHHHHHHHHHhC----
Confidence 4568999999999976321 12356899999999988765 4899999999 997763 678889999888651
Q ss_pred CCeEEEEcCCchhh-hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCC
Q 023640 101 PKRITVSTVGIVHA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV 179 (279)
Q Consensus 101 ~~~v~i~TNG~~~~-~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~ 179 (279)
..+.+.++..... ...|++.+ ...+.+++++.+++.+..+++.++..+++..++++ +.++++|.. .+.+.++-|+
T Consensus 152 -p~i~i~~g~lt~e~l~~Lk~aG-v~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i-~~a~~aG~~-~v~~g~i~Gl 227 (371)
T PRK09240 152 -SSVSIEVQPLSEEEYAELVELG-LDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETP-ERAGRAGIR-KIGLGALLGL 227 (371)
T ss_pred -CCceeccCCCCHHHHHHHHHcC-CCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHH-HHHHHcCCC-eeceEEEecC
Confidence 2456666654332 55566665 34688999999999999997644456899999999 556677765 5778888899
Q ss_pred CCcHHHHHHHHHHHhhCCc-------EEEEEecCCCC-CCCCcCCCCHHHHHHHHHHHH
Q 023640 180 NDEEQHAHQLGKLLETFQV-------VVNLIPFNPIG-SVSQFRTSSDDKVSSFQKILR 230 (279)
Q Consensus 180 nd~~~~l~~l~~~l~~~~~-------~i~l~~~~p~~-~~~~~~~~~~e~l~~~~~~l~ 230 (279)
+++.++..+++..++.+++ .|.+..++|.. +..+..+++++++.+....++
T Consensus 228 ge~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g~~~~~~~~~~~e~l~~ia~~R 286 (371)
T PRK09240 228 SDWRTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTGGIEPASIVSDKQLVQLICAFR 286 (371)
T ss_pred CccHHHHHHHHHHHHHHHHhCCCCceeeecCccccCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 9999999999987777653 24444567763 122334568888888777665
No 60
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=99.61 E-value=4.2e-13 Score=119.33 Aligned_cols=232 Identities=16% Similarity=0.219 Sum_probs=144.4
Q ss_pred ccCCcCccCccccCCCCC-----CccCCCHHHHHHHHHHHhccCCCceEE--EecCCccccC--HHHHHHHHHHHhCCCC
Q 023640 27 SQVGCKMGCNFCATGTMG-----FKSNLSSGEIVEQLVHASRLSNIRNVV--FMGMGEPLNN--YAALVEAVRIMTGLPF 97 (279)
Q Consensus 27 ~~~gCNl~C~yC~~~~~~-----~~~~~~~~ei~~~i~~~~~~~~~~~I~--fsG~GEPll~--~~~i~~~i~~~~~~g~ 97 (279)
.+.+||++|.||..+... ..+.++++++++.+.++.. .++..+. .+| ++|... .+.+.++.+..++.+
T Consensus 35 ~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~g~~~~~l~~~g-~~~~~~~~~~~~~~i~~~~~~~~- 111 (296)
T TIGR00433 35 KSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKA-AGATRFCLVASG-RGPKDREFMEYVEAMVQIVEEMG- 111 (296)
T ss_pred ccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHH-CCCCEEEEEEec-CCCChHHHHHHHHHHHHHHHhCC-
Confidence 479999999999874321 2356789999999987664 3666654 445 777653 124555555555555
Q ss_pred CCCCCeEEEEcCCchhh--hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEE
Q 023640 98 QVSPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM 175 (279)
Q Consensus 98 ~~~~~~v~i~TNG~~~~--~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv 175 (279)
+.+.+ ++|.... .+.+.+.+ ...+.++++ .+++.++.+.+ ..+++..++++ +.+++.|.++...+++
T Consensus 112 ----i~~~~-~~g~~~~e~l~~Lk~aG-~~~v~i~~E-~~~~~~~~i~~---~~s~~~~~~ai-~~l~~~Gi~v~~~~i~ 180 (296)
T TIGR00433 112 ----LKTCA-TLGLLDPEQAKRLKDAG-LDYYNHNLD-TSQEFYSNIIS---THTYDDRVDTL-ENAKKAGLKVCSGGIF 180 (296)
T ss_pred ----CeEEe-cCCCCCHHHHHHHHHcC-CCEEEEccc-CCHHHHhhccC---CCCHHHHHHHH-HHHHHcCCEEEEeEEE
Confidence 45544 4464322 34455543 345778999 78889988753 36899999999 5567788877765544
Q ss_pred eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCC--CCCCcCCCCHHHHHHHHHHHHh---cCCeEEEeccc--cccc-
Q 023640 176 LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG--SVSQFRTSSDDKVSSFQKILRG---SYNIRTTVRKQ--MGQD- 246 (279)
Q Consensus 176 ~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~--~~~~~~~~~~e~l~~~~~~l~~---~~gi~v~vr~~--~g~~- 246 (279)
|.+++.+++.+.++++.++++. +.+.++.|.. +...+.+++.+++.+....++. ..++.+.-+.+ .++.
T Consensus 181 --Gl~et~~d~~~~~~~l~~l~~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp~~~i~~~~~~~~~~~~~~ 258 (296)
T TIGR00433 181 --GLGETVEDRIGLALALANLPPESVPINFLVKIKGTPLADNKELSADDALKTIALARIIMPKAEIRLAGGREVNMRELQ 258 (296)
T ss_pred --eCCCCHHHHHHHHHHHHhCCCCEEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHHHHCCcceEEEeCCcchhhhhhH
Confidence 5678889999999999999876 6666677763 2234556777776666555542 22333322221 0111
Q ss_pred --cccccccccccCcCccCCCCCCCC-CCch
Q 023640 247 --ISGACGQLVVNLPDKISAKSTPPV-TDIE 274 (279)
Q Consensus 247 --~~~~cg~~~~~~~~~~~~~~~~~~-~~~~ 274 (279)
..-.+|.-....-|....+..++. .|+|
T Consensus 259 ~~~~l~~G~n~i~~g~~~~~~g~~~~~~~~~ 289 (296)
T TIGR00433 259 QAMCFMAGANSIFVGDYLTTTGNPEEDKDKK 289 (296)
T ss_pred HHHHHHhcCceEEEcCcccCCCCCCcHHHHH
Confidence 122222222333566666666776 6655
No 61
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=99.56 E-value=6.8e-15 Score=113.16 Aligned_cols=83 Identities=25% Similarity=0.442 Sum_probs=49.6
Q ss_pred cCCcCccCccccCCC---CCCccCCCHHHHHHHHHHHhccC-CCceEEEecCCcccc--CHHHHHHHHHHHhCCCCCCCC
Q 023640 28 QVGCKMGCNFCATGT---MGFKSNLSSGEIVEQLVHASRLS-NIRNVVFMGMGEPLN--NYAALVEAVRIMTGLPFQVSP 101 (279)
Q Consensus 28 ~~gCNl~C~yC~~~~---~~~~~~~~~~ei~~~i~~~~~~~-~~~~I~fsG~GEPll--~~~~i~~~i~~~~~~g~~~~~ 101 (279)
+.+||++|.||++.. ......++.+++.+.+....... ....|.|+| ||||| +++.+.++++.+++.+ +.
T Consensus 5 t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~G-GEPll~~~~~~l~~~i~~~~~~~---~~ 80 (119)
T PF13394_consen 5 TSGCNLRCSYCYNKSSWSPKKGEEMSIEELEEIIDELKEKGFRPSTVVFTG-GEPLLYLNPEDLIELIEYLKERG---PE 80 (119)
T ss_dssp -S--S---TTTS-TTTSST-GGGS--HHHHHHHHHHHHHTT----EEEEES-SSGGGSTTHHHHHHHHCTSTT-------
T ss_pred cCCcCCCCccCCcCccCCCccCCcccHhHHHHHHHHHHhcCCceEEEEEEC-CCCccccCHHHHHHHHHHHHhhC---CC
Confidence 589999999999843 22345667777777776544321 235799999 99995 4677889999998874 33
Q ss_pred CeEEEEcCCchhh
Q 023640 102 KRITVSTVGIVHA 114 (279)
Q Consensus 102 ~~v~i~TNG~~~~ 114 (279)
..+.+.|||++..
T Consensus 81 ~~i~i~TNg~~~~ 93 (119)
T PF13394_consen 81 IKIRIETNGTLPT 93 (119)
T ss_dssp -EEEEEE-STTHH
T ss_pred ceEEEEeCCeecc
Confidence 7999999999864
No 62
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=99.53 E-value=4.4e-14 Score=113.54 Aligned_cols=89 Identities=19% Similarity=0.329 Sum_probs=58.4
Q ss_pred CCCCceEEEEeccCCcCccCccccCCCC---CCccCCCHHHHHHHHHH-HhccC-CCceEEEecCCccccCH--HHHHHH
Q 023640 16 PGGPRSTLCISSQVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVH-ASRLS-NIRNVVFMGMGEPLNNY--AALVEA 88 (279)
Q Consensus 16 p~~~~~~l~i~~~~gCNl~C~yC~~~~~---~~~~~~~~~ei~~~i~~-~~~~~-~~~~I~fsG~GEPll~~--~~i~~~ 88 (279)
..+.|.++|+ +|||++|+||++... ..+..++.+ .++++.+ ..... ....|+|+| ||||++. +.+.++
T Consensus 14 GpG~r~~if~---~GCnl~C~~C~n~~~~~~~~g~~~~~~-~~~~il~~~~~~~~~~~gvt~sG-GEPl~~~~~~~l~~l 88 (154)
T PRK11121 14 GPGTRCTLFV---SGCVHQCPGCYNKSTWRLNSGHPFTKE-MEDQIIADLNDTRIKRQGLSLSG-GDPLHPQNVPDILKL 88 (154)
T ss_pred CCCcEEEEEc---CCCCCcCcCCCChhhccCCCCcccCHH-HHHHHHHHHHHhCCCCCcEEEEC-CCccchhhHHHHHHH
Confidence 4567999999 899999999999543 223345533 3344333 22211 236899999 9999953 677888
Q ss_pred HHHHhCCCCCCCCCeEEEEcCCchh
Q 023640 89 VRIMTGLPFQVSPKRITVSTVGIVH 113 (279)
Q Consensus 89 i~~~~~~g~~~~~~~v~i~TNG~~~ 113 (279)
++++++. .+...+ +.+||+..
T Consensus 89 ~~~~k~~---~~~~~i-~~~tGy~~ 109 (154)
T PRK11121 89 VQRVKAE---CPGKDI-WVWTGYKL 109 (154)
T ss_pred HHHHHHH---CCCCCE-EEecCCCH
Confidence 8888765 111344 55799864
No 63
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=2.6e-14 Score=120.58 Aligned_cols=85 Identities=27% Similarity=0.490 Sum_probs=69.9
Q ss_pred CceEEEEeccCCcCccCccccCC---CC---CCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHH
Q 023640 19 PRSTLCISSQVGCKMGCNFCATG---TM---GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIM 92 (279)
Q Consensus 19 ~~~~l~i~~~~gCNl~C~yC~~~---~~---~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~ 92 (279)
.+.++|++. .|||++|.||++. .. .....++.+++++.+.+... ....|+||| |||+++ +.+.++++.+
T Consensus 21 Gr~~vFVR~-~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~~--~~~~V~lTG-GEP~~~-~~l~~Ll~~l 95 (212)
T COG0602 21 GRPSVFVRF-AGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLGY--KARGVSLTG-GEPLLQ-PNLLELLELL 95 (212)
T ss_pred cceeEEEEc-CCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcCC--CcceEEEeC-CcCCCc-ccHHHHHHHH
Confidence 788999964 6999999999984 22 13467889999999987643 345899999 999775 6789999999
Q ss_pred hCCCCCCCCCeEEEEcCCchh
Q 023640 93 TGLPFQVSPKRITVSTVGIVH 113 (279)
Q Consensus 93 ~~~g~~~~~~~v~i~TNG~~~ 113 (279)
++.| .++.+.|||+..
T Consensus 96 ~~~g-----~~~~lETngti~ 111 (212)
T COG0602 96 KRLG-----FRIALETNGTIP 111 (212)
T ss_pred HhCC-----ceEEecCCCCcc
Confidence 9998 799999999864
No 64
>PRK15108 biotin synthase; Provisional
Probab=99.53 E-value=3.8e-12 Score=115.29 Aligned_cols=188 Identities=11% Similarity=0.144 Sum_probs=131.8
Q ss_pred ccCCcCccCccccCCCC---C--CccCCCHHHHHHHHHHHhccCCCceEEEecCC-ccc-cCHHHHHHHHHHHhCCCCCC
Q 023640 27 SQVGCKMGCNFCATGTM---G--FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMG-EPL-NNYAALVEAVRIMTGLPFQV 99 (279)
Q Consensus 27 ~~~gCNl~C~yC~~~~~---~--~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~G-EPl-l~~~~i~~~i~~~~~~g~~~ 99 (279)
.+++||.+|.||..+.. . ....++++|+++.+.+... .|+..|++.+-| +|. ...+.+.++++.+++.+
T Consensus 49 ~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~~a~~~~~-~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~--- 124 (345)
T PRK15108 49 KTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKA-AGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMG--- 124 (345)
T ss_pred ECCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHHHHHHHHH-cCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCC---
Confidence 47999999999987531 1 1234899999999987765 478889886513 674 34688999999999776
Q ss_pred CCCeEEEEcCCchhh--hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeC
Q 023640 100 SPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLD 177 (279)
Q Consensus 100 ~~~~v~i~TNG~~~~--~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~ 177 (279)
..++ .|||.+.. ..+|.+.+ ...+.+++|+ +++.+..+++ ..+++..++.+ +.+++.|..+.... +=
T Consensus 125 --i~v~-~s~G~ls~e~l~~LkeAG-ld~~n~~leT-~p~~f~~I~~---~~~~~~rl~~i-~~a~~~G~~v~sg~--i~ 193 (345)
T PRK15108 125 --LETC-MTLGTLSESQAQRLANAG-LDYYNHNLDT-SPEFYGNIIT---TRTYQERLDTL-EKVRDAGIKVCSGG--IV 193 (345)
T ss_pred --CEEE-EeCCcCCHHHHHHHHHcC-CCEEeecccc-ChHhcCCCCC---CCCHHHHHHHH-HHHHHcCCceeeEE--EE
Confidence 5555 67997643 45566654 2457799999 7888888864 35899999999 45677787554433 33
Q ss_pred CCCCcHHHHHHHHHHHhhCCc--E-EEEEecCCCCCCCCc---CCCCHHHHHHHHHHHH
Q 023640 178 GVNDEEQHAHQLGKLLETFQV--V-VNLIPFNPIGSVSQF---RTSSDDKVSSFQKILR 230 (279)
Q Consensus 178 g~nd~~~~l~~l~~~l~~~~~--~-i~l~~~~p~~~~~~~---~~~~~e~l~~~~~~l~ 230 (279)
|+.++.++..+++..+++++. . +.+.++.|. +++.+ ++.+..+..+.....+
T Consensus 194 GlgEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~-~gTpl~~~~~~~~~e~lr~iAi~R 251 (345)
T PRK15108 194 GLGETVKDRAGLLLQLANLPTPPESVPINMLVKV-KGTPLADNDDVDAFDFIRTIAVAR 251 (345)
T ss_pred eCCCCHHHHHHHHHHHHhccCCCCEEEeCCccCC-CCCCCCCCCCCCHHHHHHHHHHHH
Confidence 677899999999999998843 2 444455554 33433 3446677666655554
No 65
>PRK08508 biotin synthase; Provisional
Probab=99.52 E-value=1.9e-12 Score=114.07 Aligned_cols=193 Identities=13% Similarity=0.126 Sum_probs=131.5
Q ss_pred EEEEeccCCcCccCccccCCCCC-----CccCCCHHHHHHHHHHHhccCCCceEEEecCCcccc---CHHHHHHHHHHHh
Q 023640 22 TLCISSQVGCKMGCNFCATGTMG-----FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLN---NYAALVEAVRIMT 93 (279)
Q Consensus 22 ~l~i~~~~gCNl~C~yC~~~~~~-----~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll---~~~~i~~~i~~~~ 93 (279)
++.-..+.+||.+|.||..+... ..+.++++++++.+.++.. .++..+.|++.|+ .+ ..+.+.++++.++
T Consensus 8 ~i~~~~s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~-~g~~~~~lv~sg~-~~~~~~~e~~~ei~~~ik 85 (279)
T PRK08508 8 AISNISSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKA-NGALGFCLVTSGR-GLDDKKLEYVAEAAKAVK 85 (279)
T ss_pred EEeccccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHH-CCCCEEEEEeccC-CCCcccHHHHHHHHHHHH
Confidence 33334668999999999885421 1234799999999998765 3778888854144 22 3467889999999
Q ss_pred CCCCCCCCCeEEE-EcCCchhh--hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEE
Q 023640 94 GLPFQVSPKRITV-STVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 170 (279)
Q Consensus 94 ~~g~~~~~~~v~i-~TNG~~~~--~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~ 170 (279)
+.+ ..+.+ .++|.... +.+|.+.+ ...+.+.+++. ++.+..+.+ ..++++.++.+ +.+++.|. .
T Consensus 86 ~~~-----p~l~i~~s~G~~~~e~l~~Lk~aG-ld~~~~~lEt~-~~~~~~i~~---~~~~~~~l~~i-~~a~~~Gi--~ 152 (279)
T PRK08508 86 KEV-----PGLHLIACNGTASVEQLKELKKAG-IFSYNHNLETS-KEFFPKICT---THTWEERFQTC-ENAKEAGL--G 152 (279)
T ss_pred hhC-----CCcEEEecCCCCCHHHHHHHHHcC-CCEEcccccch-HHHhcCCCC---CCCHHHHHHHH-HHHHHcCC--e
Confidence 874 23443 47886532 44555554 23466778774 566665532 36799999999 45677775 5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCc--CCCCHHHHHHHHHHHH
Q 023640 171 IEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQF--RTSSDDKVSSFQKILR 230 (279)
Q Consensus 171 i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~--~~~~~e~l~~~~~~l~ 230 (279)
+.+.++.|++++.+++.+++.+++++++. +-+..++|.. ++.+ ++.+.++..+....++
T Consensus 153 v~sg~I~GlGEt~ed~~~~l~~lr~L~~~svpl~~~~p~~-~t~~~~~~~~~~~~lr~iAv~R 214 (279)
T PRK08508 153 LCSGGIFGLGESWEDRISFLKSLASLSPHSTPINFFIPNP-ALPLKAPTLSADEALEIVRLAK 214 (279)
T ss_pred ecceeEEecCCCHHHHHHHHHHHHcCCCCEEeeCCcCCCC-CCCCCCCCCCHHHHHHHHHHHH
Confidence 55666778999999999999999999876 5444555652 2222 3467888888777666
No 66
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=99.52 E-value=6.8e-12 Score=110.73 Aligned_cols=202 Identities=19% Similarity=0.239 Sum_probs=130.2
Q ss_pred cCCcCccCccccCCCCCC--ccCCCHHHHHHHHHHHhccCCCceEEEecCCccccC-HHHHHHHHHHHhCCCCCCCCCeE
Q 023640 28 QVGCKMGCNFCATGTMGF--KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN-YAALVEAVRIMTGLPFQVSPKRI 104 (279)
Q Consensus 28 ~~gCNl~C~yC~~~~~~~--~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~-~~~i~~~i~~~~~~g~~~~~~~v 104 (279)
+.+|...|+||+...... ...++.+++-..+.-++..+.+..|.||| |+||+- .+.+..+++.+++.. +...+
T Consensus 118 t~~C~vyCRyCfRr~~~~~~~~~~~~~~~~~al~YIa~hPeI~eVllSG-GDPL~ls~~~L~~ll~~L~~Ip---Hv~ii 193 (369)
T COG1509 118 TGVCAVYCRYCFRRRFVGQDNQGFNKEEWDKALDYIAAHPEIREVLLSG-GDPLSLSDKKLEWLLKRLRAIP---HVKII 193 (369)
T ss_pred cCcccceeeecccccccccccccCCHHHHHHHHHHHHcCchhheEEecC-CCccccCHHHHHHHHHHHhcCC---ceeEE
Confidence 689999999999854322 22257777777777777667889999999 999996 566888999998873 12455
Q ss_pred EEEcCCc--hhh--hHHHhccCC--CceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCC
Q 023640 105 TVSTVGI--VHA--INKFHSDLP--GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDG 178 (279)
Q Consensus 105 ~i~TNG~--~~~--~~~l~~~~~--~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g 178 (279)
.|.|-.- .+. ...+.+.+. ...+.+..+.-.+ +.++ ..+.+++ +.+..+|+.+.-++++++|
T Consensus 194 Ri~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH~NHp---~Eit--------~e~~~A~-~~L~~aGv~l~NQsVLLrG 261 (369)
T COG1509 194 RIGTRLPVVLPQRITDELCEILGKSRKPVWLVTHFNHP---NEIT--------PEAREAC-AKLRDAGVPLLNQSVLLRG 261 (369)
T ss_pred EeecccceechhhccHHHHHHHhccCceEEEEcccCCh---hhcC--------HHHHHHH-HHHHHcCceeecchheecc
Confidence 5666552 222 122322221 2445555543222 1221 2455666 5567889999999999999
Q ss_pred CCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHh---cCCeEEEeccccccc
Q 023640 179 VNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG---SYNIRTTVRKQMGQD 246 (279)
Q Consensus 179 ~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~---~~gi~v~vr~~~g~~ 246 (279)
+||+.+.+.+|.+.|...|+. ..+....+......|. .+.++-.++.+.+++ .+..++.++...|..
T Consensus 262 VND~~evl~~L~~~L~~~gV~PYYl~~~D~~~G~~hfr-~~i~~~~~i~~~lr~~~SG~~~P~~v~d~pgg~ 332 (369)
T COG1509 262 VNDDPEVLKELSRALFDAGVKPYYLHQLDLVQGAAHFR-VPIAEGLQIVEELRGRTSGYAVPTLVVDIPGGG 332 (369)
T ss_pred cCCCHHHHHHHHHHHHHcCCcceEEeccCccCCcccee-ccHHHHHHHHHHHHHhCCCcccceeEEecCCCC
Confidence 999999999999999888876 4444444442233444 566665666555552 445566666555443
No 67
>PRK06256 biotin synthase; Validated
Probab=99.52 E-value=3.1e-12 Score=115.84 Aligned_cols=189 Identities=14% Similarity=0.162 Sum_probs=129.9
Q ss_pred ccCCcCccCccccCCCCC-----CccCCCHHHHHHHHHHHhccCCCceEEE-ecCCccccC-HHHHHHHHHHHhCCCCCC
Q 023640 27 SQVGCKMGCNFCATGTMG-----FKSNLSSGEIVEQLVHASRLSNIRNVVF-MGMGEPLNN-YAALVEAVRIMTGLPFQV 99 (279)
Q Consensus 27 ~~~gCNl~C~yC~~~~~~-----~~~~~~~~ei~~~i~~~~~~~~~~~I~f-sG~GEPll~-~~~i~~~i~~~~~~g~~~ 99 (279)
.+.+||++|.||+.+... ..+.++++++++.+.++.+. ++..+.| +|.++|... .+.+.++++.+++. .+
T Consensus 64 ~s~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~-g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~-~~- 140 (336)
T PRK06256 64 KSGLCPEDCGYCSQSAGSSAPVYRYAWLDIEELIEAAKEAIEE-GAGTFCIVASGRGPSGKEVDQVVEAVKAIKEE-TD- 140 (336)
T ss_pred cCCCCCCCCccCCCcCCCCCCCceecCCCHHHHHHHHHHHHHC-CCCEEEEEecCCCCCchHHHHHHHHHHHHHhc-CC-
Confidence 369999999999875321 12457999999999987654 5555544 441556543 24788889988875 21
Q ss_pred CCCeEEEEcCCchhh--hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeC
Q 023640 100 SPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLD 177 (279)
Q Consensus 100 ~~~~v~i~TNG~~~~--~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~ 177 (279)
+.+. .++|.+.. ...+++.+ ...+.+++++ +++.++.+.+ ..++++.++++ +.+++.|..+...+++
T Consensus 141 --i~~~-~~~g~l~~e~l~~LkeaG-~~~v~~~lEt-s~~~~~~i~~---~~t~~~~i~~i-~~a~~~Gi~v~~~~I~-- 209 (336)
T PRK06256 141 --LEIC-ACLGLLTEEQAERLKEAG-VDRYNHNLET-SRSYFPNVVT---THTYEDRIDTC-EMVKAAGIEPCSGGII-- 209 (336)
T ss_pred --CcEE-ecCCcCCHHHHHHHHHhC-CCEEecCCcc-CHHHHhhcCC---CCCHHHHHHHH-HHHHHcCCeeccCeEE--
Confidence 3333 33555322 44455554 3456688999 8999988854 35799999999 5567788776655443
Q ss_pred CCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCC---CcCCCCHHHHHHHHHHHH
Q 023640 178 GVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVS---QFRTSSDDKVSSFQKILR 230 (279)
Q Consensus 178 g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~---~~~~~~~e~l~~~~~~l~ 230 (279)
|++++.+++.+++++++++++. +.+.++.|. +++ ..++++.+++.+....++
T Consensus 210 GlgEt~ed~~~~~~~l~~l~~~~v~i~~l~P~-pGT~l~~~~~~~~~e~l~~ia~~R 265 (336)
T PRK06256 210 GMGESLEDRVEHAFFLKELDADSIPINFLNPI-PGTPLENHPELTPLECLKTIAIFR 265 (336)
T ss_pred eCCCCHHHHHHHHHHHHhCCCCEEeecccccC-CCCCCCCCCCCCHHHHHHHHHHHH
Confidence 5678899999999999999876 666677775 333 334567888877766665
No 68
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=99.51 E-value=2.4e-12 Score=122.21 Aligned_cols=175 Identities=12% Similarity=0.140 Sum_probs=128.2
Q ss_pred EEeccCCcCccCccccCCCC-CCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCC-CCCCC
Q 023640 24 CISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSP 101 (279)
Q Consensus 24 ~i~~~~gCNl~C~yC~~~~~-~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g-~~~~~ 101 (279)
.+.++.|||++|.||..+.. ...+..+++.+++++..+.+..++..+.|++ .+|+++.+.+.++++.+.+.+ ..
T Consensus 196 ~i~tSRGCp~~C~FC~~~~~~~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~D-d~f~~~~~~~~~l~~~l~~~~~l~--- 271 (497)
T TIGR02026 196 VPNFARGCPFTCNFCSQWKFWRRYRHRDPKKFVDEIEWLVRTHGVGFFILAD-EEPTINRKKFQEFCEEIIARNPIS--- 271 (497)
T ss_pred eeeccCCCCCCCCCCCCCCCCceeecCCHHHHHHHHHHHHHHcCCCEEEEEe-cccccCHHHHHHHHHHHHhcCCCC---
Confidence 45567999999999988643 2346678999999999876545889999999 999999888999999988764 21
Q ss_pred CeEEEEcCCch----hh-hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEe
Q 023640 102 KRITVSTVGIV----HA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIML 176 (279)
Q Consensus 102 ~~v~i~TNG~~----~~-~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~ 176 (279)
......|.... .+ +..+.+.+ ...+.+.+++.+++..+.+. +..+.+.+.+++ +.+++.|+.+.+.+++-
T Consensus 272 i~w~~~~r~~~i~~d~ell~~l~~aG-~~~v~iGiES~~~~~L~~~~---K~~t~~~~~~ai-~~l~~~Gi~~~~~~I~G 346 (497)
T TIGR02026 272 VTWGINTRVTDIVRDADILHLYRRAG-LVHISLGTEAAAQATLDHFR---KGTTTSTNKEAI-RLLRQHNILSEAQFITG 346 (497)
T ss_pred eEEEEecccccccCCHHHHHHHHHhC-CcEEEEccccCCHHHHHHhc---CCCCHHHHHHHH-HHHHHCCCcEEEEEEEE
Confidence 33444444321 12 22333433 35677899999999888773 346789999999 67788898887766652
Q ss_pred CCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 177 DGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 177 ~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
--+++.+++.+.++++.++++. +.+..+.|.
T Consensus 347 -~P~et~e~~~~t~~~~~~l~~~~~~~~~~tP~ 378 (497)
T TIGR02026 347 -FENETDETFEETYRQLLDWDPDQANWLMYTPW 378 (497)
T ss_pred -CCCCCHHHHHHHHHHHHHcCCCceEEEEecCC
Confidence 1257889999999999998764 555555555
No 69
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=99.50 E-value=5.1e-12 Score=118.04 Aligned_cols=181 Identities=13% Similarity=0.216 Sum_probs=124.0
Q ss_pred eEEEEeccCCcCccCccccCCCC-CCccCCCHHHHHHHHHHHhccCCCceEEEec-----CCccccCHHHHHHHHHHHhC
Q 023640 21 STLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMG-----MGEPLNNYAALVEAVRIMTG 94 (279)
Q Consensus 21 ~~l~i~~~~gCNl~C~yC~~~~~-~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG-----~GEPll~~~~i~~~i~~~~~ 94 (279)
...++.++.|||++|.||..+.. +..+..+++++++++.++.+. +.+.|.|+| +|+++.+.+.+.++++.+.+
T Consensus 135 ~~~~i~~srGC~~~CsfC~~~~~~G~~r~r~~e~Vv~Ei~~l~~~-g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~ 213 (430)
T TIGR01125 135 HYAYLKVAEGCNRRCAFCIIPSIRGKLRSRPIEEILKEAERLVDQ-GVKEIILIAQDTTAYGKDLYRESKLVDLLEELGK 213 (430)
T ss_pred eEEEEEEccCCCCCCCcCCeecccCCceecCHHHHHHHHHHHHHC-CCcEEEEEeECCCccccCCCCcccHHHHHHHHHh
Confidence 44567778999999999987532 334677899999999987653 678888876 47777655678899998887
Q ss_pred CCCCCCCCeEEEE-cC--CchhhhHH-HhccCC-CceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeE
Q 023640 95 LPFQVSPKRITVS-TV--GIVHAINK-FHSDLP-GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI 169 (279)
Q Consensus 95 ~g~~~~~~~v~i~-TN--G~~~~~~~-l~~~~~-~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v 169 (279)
.+. . ..+.+. ++ ....++.+ +++... ...+.+++++.+++..+.+. +..+.+++.++++ .+++.+..+
T Consensus 214 ~~~-i--~~~r~~~~~p~~~~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m~---k~~~~~~~~~~i~-~l~~~~~~i 286 (430)
T TIGR01125 214 VGG-I--YWIRMHYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMR---RPGSGEQQLDFIE-RLREKCPDA 286 (430)
T ss_pred cCC-c--cEEEEccCCcccCCHHHHHHHhhCCcccCceEeCCCCCCHHHHhhCC---CCCCHHHHHHHHH-HHHHhCCCC
Confidence 640 1 122221 22 22222222 333311 23467899999999988774 3467889999994 455554445
Q ss_pred EEEEEEeCCC-CCcHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 023640 170 FIEYIMLDGV-NDEEQHAHQLGKLLETFQVV-VNLIPFNPIG 209 (279)
Q Consensus 170 ~i~~vv~~g~-nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~ 209 (279)
.+.+.++-|+ +++++++.+.++++.+.++. +++.+|.|.+
T Consensus 287 ~i~~~~I~G~PgET~e~~~~t~~fl~~~~~~~~~~~~~sp~p 328 (430)
T TIGR01125 287 VLRTTFIVGFPGETEEDFQELLDFVEEGQFDRLGAFTYSPEE 328 (430)
T ss_pred eEeEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCC
Confidence 5544444443 67899999999999998875 7888888873
No 70
>PLN02389 biotin synthase
Probab=99.49 E-value=6e-12 Score=114.97 Aligned_cols=187 Identities=13% Similarity=0.229 Sum_probs=132.3
Q ss_pred ccCCcCccCccccCCCC---C--CccCCCHHHHHHHHHHHhccCCCceEEEe-----cCCccccCHHHHHHHHHHHhCCC
Q 023640 27 SQVGCKMGCNFCATGTM---G--FKSNLSSGEIVEQLVHASRLSNIRNVVFM-----GMGEPLNNYAALVEAVRIMTGLP 96 (279)
Q Consensus 27 ~~~gCNl~C~yC~~~~~---~--~~~~~~~~ei~~~i~~~~~~~~~~~I~fs-----G~GEPll~~~~i~~~i~~~~~~g 96 (279)
.+.+|+.+|.||..... + ....++++++++.+.+.... |+..|.+. +.|||.. ++++.++++.+++.+
T Consensus 89 ~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~~a~~~~~~-G~~~~~ivts~rg~~~e~~~-~e~i~eiir~ik~~~ 166 (379)
T PLN02389 89 KTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLEAAKRAKEA-GSTRFCMGAAWRDTVGRKTN-FNQILEYVKEIRGMG 166 (379)
T ss_pred ccCCcCcCCCCCCCcccCCCCCcccccCCHHHHHHHHHHHHHc-CCCEEEEEecccCCCCChhH-HHHHHHHHHHHhcCC
Confidence 47999999999987432 1 13458999999999987653 77777763 2267765 688999999999776
Q ss_pred CCCCCCeEEEEcCCchhh--hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEE
Q 023640 97 FQVSPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYI 174 (279)
Q Consensus 97 ~~~~~~~v~i~TNG~~~~--~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~v 174 (279)
..++ .|||.+.. ..+|.+.+ ...+.+++++ .++.++.+.+ ..++++.++.+ +.+++.|.++...
T Consensus 167 -----l~i~-~s~G~l~~E~l~~LkeAG-ld~~~~~LeT-s~~~y~~i~~---~~s~e~rl~ti-~~a~~~Gi~v~sg-- 232 (379)
T PLN02389 167 -----MEVC-CTLGMLEKEQAAQLKEAG-LTAYNHNLDT-SREYYPNVIT---TRSYDDRLETL-EAVREAGISVCSG-- 232 (379)
T ss_pred -----cEEE-ECCCCCCHHHHHHHHHcC-CCEEEeeecC-ChHHhCCcCC---CCCHHHHHHHH-HHHHHcCCeEeEE--
Confidence 4554 68896542 55666664 2456788988 4678887764 25899999999 5567788765543
Q ss_pred EeCCCCCcHHHHHHHHHHHhhCCc--E-EEEEecCCCCCCCC---cCCCCHHHHHHHHHHHH
Q 023640 175 MLDGVNDEEQHAHQLGKLLETFQV--V-VNLIPFNPIGSVSQ---FRTSSDDKVSSFQKILR 230 (279)
Q Consensus 175 v~~g~nd~~~~l~~l~~~l~~~~~--~-i~l~~~~p~~~~~~---~~~~~~e~l~~~~~~l~ 230 (279)
++-|++++.++..+.+.++++++. . +.+.+++|. +++. .++++.++..+.....+
T Consensus 233 ~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~-~GTpL~~~~~~s~~e~lr~iAi~R 293 (379)
T PLN02389 233 GIIGLGEAEEDRVGLLHTLATLPEHPESVPINALVAV-KGTPLEDQKPVEIWEMVRMIATAR 293 (379)
T ss_pred EEECCCCCHHHHHHHHHHHHhcccCCcEEecccceec-CCCcCCCCCCCCHHHHHHHHHHHH
Confidence 445778899999999999988843 2 555566666 3443 34567777676666554
No 71
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.48 E-value=9.7e-12 Score=116.90 Aligned_cols=180 Identities=15% Similarity=0.301 Sum_probs=125.3
Q ss_pred CceEEEEeccCCcCccCccccCCC-CCCccCCCHHHHHHHHHHHhccCCCceEEEec-----CCccccCHHHHHHHHHHH
Q 023640 19 PRSTLCISSQVGCKMGCNFCATGT-MGFKSNLSSGEIVEQLVHASRLSNIRNVVFMG-----MGEPLNNYAALVEAVRIM 92 (279)
Q Consensus 19 ~~~~l~i~~~~gCNl~C~yC~~~~-~~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG-----~GEPll~~~~i~~~i~~~ 92 (279)
.+...++..+.|||++|.||..+. .+..+..+++++++++..+... |++.|.|+| +|+|+...+.+.++++.+
T Consensus 153 ~~~~~~i~I~rGC~~~CsfC~~p~~~G~~rsr~~e~Il~ei~~l~~~-G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l 231 (459)
T PRK14338 153 PPVTVHVPIIYGCNMSCSYCVIPLRRGRERSRPLAEIVEEVRRIAAR-GAKEITLLGQIVDSYGHDLPGRPDLADLLEAV 231 (459)
T ss_pred CceEEEEEcccCCCCCCCcCCeeccCCCCccCCHHHHHHHHHHHHHC-CCeEEEEeeecCCCcccccCChHHHHHHHHHH
Confidence 356788888899999999998753 2334678999999999987754 788999998 467765445688999998
Q ss_pred hCC-CCCCCCCeEEEE-cCCchhh---hHHHhccCC-CceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhh-
Q 023640 93 TGL-PFQVSPKRITVS-TVGIVHA---INKFHSDLP-GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS- 165 (279)
Q Consensus 93 ~~~-g~~~~~~~v~i~-TNG~~~~---~~~l~~~~~-~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~- 165 (279)
.+. |+ ..+.+. +|..... +..+.+... ...+.+++++.++++.+.+.+ ..+.++++++++. +++.
T Consensus 232 ~~~~gi----~~ir~~~~~p~~i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~R---~~t~e~~~~~i~~-lr~~~ 303 (459)
T PRK14338 232 HEIPGL----ERLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMRR---GYTVARYRELIAR-IREAI 303 (459)
T ss_pred HhcCCc----ceEEEEecChhhcCHHHHHHHhcccccccceecCcccCCHHHHHhccC---CCCHHHHHHHHHH-HHHhC
Confidence 875 41 234443 3553222 222323211 134668889999999988743 4689999999954 4454
Q ss_pred -CCeEEEEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 023640 166 -QQKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG 209 (279)
Q Consensus 166 -~~~v~i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~ 209 (279)
+..+...+++ .| +++.+++.+.++++.++++. +++.+|.|..
T Consensus 304 pgi~i~~d~IvG~P--gET~ed~~~ti~~l~~l~~~~v~i~~ysp~p 348 (459)
T PRK14338 304 PDVSLTTDIIVGHP--GETEEQFQRTYDLLEEIRFDKVHIAAYSPRP 348 (459)
T ss_pred CCCEEEEEEEEECC--CCCHHHHHHHHHHHHHcCCCEeEEEecCCCC
Confidence 4433333333 34 56889999999999999875 8888888863
No 72
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=99.48 E-value=6e-12 Score=117.70 Aligned_cols=179 Identities=16% Similarity=0.300 Sum_probs=122.3
Q ss_pred ceEEEEeccCCcCccCccccCCCC-CCccCCCHHHHHHHHHHHhccCCCceEEEecC-----------------CccccC
Q 023640 20 RSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM-----------------GEPLNN 81 (279)
Q Consensus 20 ~~~l~i~~~~gCNl~C~yC~~~~~-~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~-----------------GEPll~ 81 (279)
+...++.++.|||++|.||..+.. +..+..+++++++++..+... |++.|.|+|. |+|+
T Consensus 138 ~~~a~v~isrGCp~~CsFC~ip~~~G~~rsr~~e~Vv~Ei~~l~~~-g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~-- 214 (440)
T PRK14862 138 RHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLREAERLVKA-GVKELLVISQDTSAYGVDVKYRTGFWNGRPV-- 214 (440)
T ss_pred CcEEEEEeccCCCCCCccCCcccccCCccccCHHHHHHHHHHHHHC-CCceEEEEecChhhhccccccccccccccch--
Confidence 345677778999999999987532 234678899999999987653 6778887741 3344
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEE-EEcCCchhhhHHHhccCCCc--eEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHH
Q 023640 82 YAALVEAVRIMTGLPFQVSPKRIT-VSTVGIVHAINKFHSDLPGL--NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 158 (279)
Q Consensus 82 ~~~i~~~i~~~~~~g~~~~~~~v~-i~TNG~~~~~~~l~~~~~~~--~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l 158 (279)
++.+.++++.+.+.|+ ...+. +.+++...++.++...+ .+ .+.|++++.+++..+.+. +..+++.+++++
T Consensus 215 ~~~~~~Ll~~l~~~~~---~~r~~~~~p~~~~dell~~m~~g-~~~~~l~IglESgs~~vLk~m~---r~~~~~~~~~~i 287 (440)
T PRK14862 215 KTRMTDLCEALGELGA---WVRLHYVYPYPHVDEVIPLMAEG-KILPYLDIPFQHASPRVLKRMK---RPASVEKTLERI 287 (440)
T ss_pred hhHHHHHHHHHHhcCC---EEEEecCCCCcCCHHHHHHHhcC-CCccccccccccCCHHHHHhcC---CCCCHHHHHHHH
Confidence 3678899999988763 12332 34455433333333333 33 566899999999988774 357889999999
Q ss_pred HHHHHhhCCeEEEEEEEeCC-CCCcHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 023640 159 KEYQKNSQQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG 209 (279)
Q Consensus 159 ~~~~~~~~~~v~i~~vv~~g-~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~ 209 (279)
+. +++....+.+.+.++-| -++++++++++.+++.++++. +++.+|.|.+
T Consensus 288 ~~-lr~~~~~i~i~t~~IvGfPgET~edf~~tl~fi~e~~~d~~~~f~ysP~p 339 (440)
T PRK14862 288 KK-WREICPDLTIRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKYSPVE 339 (440)
T ss_pred HH-HHHHCCCceecccEEEECCCCCHHHHHHHHHHHHHcCCCeeeeEeecCCC
Confidence 55 44443333444333323 357889999999999999875 7788888874
No 73
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=99.48 E-value=2.3e-12 Score=111.86 Aligned_cols=157 Identities=19% Similarity=0.257 Sum_probs=109.8
Q ss_pred CceEEEEeccCCcCccCccccCCCCCC---------ccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHH
Q 023640 19 PRSTLCISSQVGCKMGCNFCATGTMGF---------KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAV 89 (279)
Q Consensus 19 ~~~~l~i~~~~gCNl~C~yC~~~~~~~---------~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i 89 (279)
...++|+ |.-||.+|.||+.+.... ..--+.++++.++... +..++.+|| |||++..++..+++
T Consensus 28 ~KlVlFv--TG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~----~a~GasiTG-GdPl~~ieR~~~~i 100 (353)
T COG2108 28 GKLVLFV--TGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLM----DALGASITG-GDPLLEIERTVEYI 100 (353)
T ss_pred CceEEEE--ecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHh----ccccccccC-CChHHHHHHHHHHH
Confidence 4558888 588999999999853211 1223455555555432 457899999 99999989999999
Q ss_pred HHHhCC-CCCCCCCeEEEEcCCchhh---hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhh
Q 023640 90 RIMTGL-PFQVSPKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 165 (279)
Q Consensus 90 ~~~~~~-g~~~~~~~v~i~TNG~~~~---~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~ 165 (279)
+.+|+. |- ..|+.+.|+|.+.+ ++.|.+++ ...|.|-...+. ....++.++++ ..++++
T Consensus 101 r~LK~efG~---~fHiHLYT~g~~~~~e~l~~L~eAG-LDEIRfHp~~~~------------~~~~e~~i~~l-~~A~~~ 163 (353)
T COG2108 101 RLLKDEFGE---DFHIHLYTTGILATEEALKALAEAG-LDEIRFHPPRPG------------SKSSEKYIENL-KIAKKY 163 (353)
T ss_pred HHHHHhhcc---ceeEEEeeccccCCHHHHHHHHhCC-CCeEEecCCCcc------------ccccHHHHHHH-HHHHHh
Confidence 999987 42 37999999998765 33444443 223444332111 23457888888 567789
Q ss_pred CCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEE
Q 023640 166 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNL 202 (279)
Q Consensus 166 ~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l 202 (279)
|..+.+.+..+|+ .++.+.++++++.+.+.. +++
T Consensus 164 g~dvG~EiPaipg---~e~~i~e~~~~~~~~~~~FlNi 198 (353)
T COG2108 164 GMDVGVEIPAIPG---EEEAILEFAKALDENGLDFLNI 198 (353)
T ss_pred CccceeecCCCcc---hHHHHHHHHHHHHhcccceeee
Confidence 9999999999998 456788899999888743 444
No 74
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=99.47 E-value=1.8e-12 Score=117.47 Aligned_cols=197 Identities=15% Similarity=0.172 Sum_probs=128.9
Q ss_pred eccCCcCccCccccCCCCC---CccCCCHHHHHHHHHHHhccCCCceEEEecCC-ccccCHHHHHHHHHHHhCCCCCCCC
Q 023640 26 SSQVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMG-EPLNNYAALVEAVRIMTGLPFQVSP 101 (279)
Q Consensus 26 ~~~~gCNl~C~yC~~~~~~---~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~G-EPll~~~~i~~~i~~~~~~g~~~~~ 101 (279)
..+.+|+.+|.||..+... ....++++++++.+.++.. .|+..|.|+| | +|.+..+.+.++++.+++.+..+..
T Consensus 46 ~~s~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~~~~~~~-~G~~~i~l~g-G~~p~~~~~~~~~li~~Ik~~~~~i~~ 123 (340)
T TIGR03699 46 NYTNICVVGCKFCAFYRAPGHPEGYVLSVEEILQKIEELVA-YGGTQILLQG-GVNPDLGLDYYEDLFRAIKARFPHIHI 123 (340)
T ss_pred ccchhhccCCccCCcccCCCCccccCCCHHHHHHHHHHHHH-cCCcEEEEec-CCCCCCCHHHHHHHHHHHHHHCCCcCC
Confidence 3579999999999653221 1235899999999988765 4789999999 7 7777778888999999876422210
Q ss_pred Ce-------EEEEcCCchh-h-hHHHhccCCCceEE-EEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEE
Q 023640 102 KR-------ITVSTVGIVH-A-INKFHSDLPGLNLA-VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 171 (279)
Q Consensus 102 ~~-------v~i~TNG~~~-~-~~~l~~~~~~~~i~-iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i 171 (279)
.. ....|||+.. + ..++++.+. ..+. ...+..+++.++.+.+. ..++++.++.+ +.+++.|.++..
T Consensus 124 ~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG~-~~~~~~g~E~~~~~~~~~~~~~--~~s~~~~l~~i-~~a~~~Gi~v~~ 199 (340)
T TIGR03699 124 HSFSPVEIVYIAKKEGLSLREVLERLKEAGL-DSIPGGGAEILSDRVRKIISPK--KISSEEWLEVM-ETAHKLGLPTTA 199 (340)
T ss_pred CCCCHHHHHHHhccCCCCHHHHHHHHHHcCC-CcCCCCcccccCHHHHHhhCCC--CCCHHHHHHHH-HHHHHcCCCccc
Confidence 00 0123677652 2 445555542 2222 23455677888877543 36789999999 667888988765
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhhCCcE-E---EEEec--CCCC-CCCCcCCCCHHHHHHHHHHHH
Q 023640 172 EYIMLDGVNDEEQHAHQLGKLLETFQVV-V---NLIPF--NPIG-SVSQFRTSSDDKVSSFQKILR 230 (279)
Q Consensus 172 ~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i---~l~~~--~p~~-~~~~~~~~~~e~l~~~~~~l~ 230 (279)
.+++ |..++.+++.+.+.++++++.. . .++|+ .|.+ +.....+++.++..+.....+
T Consensus 200 ~~ii--GlgEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~e~l~~iA~~R 263 (340)
T TIGR03699 200 TMMF--GHVETLEDRIEHLERIRELQDKTGGFTAFIPWTFQPGNTELGKKRPATSTEYLKVLAISR 263 (340)
T ss_pred eeEe--eCCCCHHHHHHHHHHHHHhchhhCCeeEEEeecccCCCCcccCCCCCCHHHHHHHHHHHH
Confidence 5544 4567888999999999988764 2 33442 3322 222334567777777766655
No 75
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=99.47 E-value=6.7e-12 Score=114.70 Aligned_cols=196 Identities=13% Similarity=0.125 Sum_probs=133.0
Q ss_pred EeccCCcCccCccccCCCC--CCccCCCHHHHHHHHHHHhccCCCceEEEecCCccc--cCHHHHHHHHHHHhCCCCCCC
Q 023640 25 ISSQVGCKMGCNFCATGTM--GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPL--NNYAALVEAVRIMTGLPFQVS 100 (279)
Q Consensus 25 i~~~~gCNl~C~yC~~~~~--~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPl--l~~~~i~~~i~~~~~~g~~~~ 100 (279)
++.|++||.+|.||..... .....++.+++.+.+..+... |+..|.++| ||+. ...+.+.++++.+++..
T Consensus 77 i~~Tn~C~~~C~yC~~s~~~~~~~~~Ls~eEI~~~a~~~~~~-Gv~~i~lvg-Ge~p~~~~~e~l~eii~~Ik~~~---- 150 (366)
T TIGR02351 77 LYLSNYCSNKCVYCGFSMSNKIKRKKLNEEEIEREIEAIKKS-GFKEILLVT-GESEKAAGVEYIAEAIKLAREYF---- 150 (366)
T ss_pred eeECccccCCCCcCCCCCCCCCccCcCCHHHHHHHHHHHHhC-CCCEEEEee-CCCCCCCCHHHHHHHHHHHHHhC----
Confidence 3568999999999977422 122457999999999887764 799999998 8744 44678999999998752
Q ss_pred CCeEEEEcCCch-hhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCC
Q 023640 101 PKRITVSTVGIV-HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV 179 (279)
Q Consensus 101 ~~~v~i~TNG~~-~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~ 179 (279)
..+.+..+-.. ....+|.+.+ ...+.+++++.+++.+..+++..+..+++..++++ +.+++.|.. .+.+.++-|+
T Consensus 151 -p~i~Iei~~lt~e~~~~Lk~aG-v~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i-~~a~~aG~~-~v~~g~i~Gl 226 (366)
T TIGR02351 151 -SSLAIEVQPLNEEEYKKLVEAG-LDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTP-ERAAKAGMR-KIGIGALLGL 226 (366)
T ss_pred -CccccccccCCHHHHHHHHHcC-CCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHH-HHHHHcCCC-eeceeEEEeC
Confidence 11222223221 2245666765 34688999999999999987554556899999999 556677765 2344666788
Q ss_pred CCcHHHHHHHHHHHhhCCc-------EEEEEecCCCC-CCCCcCCCCHHHHHHHHHHHH
Q 023640 180 NDEEQHAHQLGKLLETFQV-------VVNLIPFNPIG-SVSQFRTSSDDKVSSFQKILR 230 (279)
Q Consensus 180 nd~~~~l~~l~~~l~~~~~-------~i~l~~~~p~~-~~~~~~~~~~e~l~~~~~~l~ 230 (279)
+++..+..+++..++.+++ .+.+.-++|.. +.....+.++.++.+....++
T Consensus 227 ~e~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g~~~~~~~l~~~~~~~~i~~~R 285 (366)
T TIGR02351 227 DDWRTDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTNGLKPKVIVTDRELVQIICAYR 285 (366)
T ss_pred chhHHHHHHHHHHHHHHHHHcCCCCccccccccccCCCCCCCCCcCCHHHHHHHHHHHH
Confidence 8888888888877666543 23333355552 222334467777777766655
No 76
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=99.46 E-value=1.1e-11 Score=117.19 Aligned_cols=173 Identities=13% Similarity=0.144 Sum_probs=124.7
Q ss_pred EEEeccCCcCccCccccCCCC---CCccCCCHHHHHHHHHHHhcc-CCCceEEEecCCccccCHHHHHHHHHHHhCCCCC
Q 023640 23 LCISSQVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRL-SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQ 98 (279)
Q Consensus 23 l~i~~~~gCNl~C~yC~~~~~---~~~~~~~~~ei~~~i~~~~~~-~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~ 98 (279)
+.+.++.||+++|.||..+.. ...+..+++.+++++...... .+++.|.|.+ +.++.+.+.+.++++.+++.+
T Consensus 198 ~~i~tsRGCp~~C~FC~~~~~~~g~~~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~D-d~f~~~~~~~~~l~~~l~~~~-- 274 (472)
T TIGR03471 198 ISLYTGRGCPSKCTFCLWPQTVGGHRYRTRSAESVIEEVKYALENFPEVREFFFDD-DTFTDDKPRAEEIARKLGPLG-- 274 (472)
T ss_pred EEEEecCCCCCCCCCCCCCccCCCCceEeCCHHHHHHHHHHHHHhcCCCcEEEEeC-CCCCCCHHHHHHHHHHHhhcC--
Confidence 345567999999999976432 123567999999999987653 3678899988 888888888999999998876
Q ss_pred CCCCeEEEEcCCch-hh-hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEE-
Q 023640 99 VSPKRITVSTVGIV-HA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM- 175 (279)
Q Consensus 99 ~~~~~v~i~TNG~~-~~-~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv- 175 (279)
......+.... .+ ++.+++.+ ...+.+.+++.+++..+.+. +..+.+.+.+++ +.+++.|+.+...+++
T Consensus 275 ---i~~~~~~~~~~~~e~l~~l~~aG-~~~v~iGiES~s~~~L~~~~---K~~~~~~~~~~i-~~~~~~Gi~v~~~~IiG 346 (472)
T TIGR03471 275 ---VTWSCNARANVDYETLKVMKENG-LRLLLVGYESGDQQILKNIK---KGLTVEIARRFT-RDCHKLGIKVHGTFILG 346 (472)
T ss_pred ---ceEEEEecCCCCHHHHHHHHHcC-CCEEEEcCCCCCHHHHHHhc---CCCCHHHHHHHH-HHHHHCCCeEEEEEEEe
Confidence 33434433322 22 33444443 34677899999999888773 346788899999 6678889888777665
Q ss_pred eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 176 LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 176 ~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
.| .++.+++.+.++++.+++.. +++..+.|.
T Consensus 347 lP--get~e~~~~ti~~~~~l~~~~~~~~~l~P~ 378 (472)
T TIGR03471 347 LP--GETRETIRKTIDFAKELNPHTIQVSLAAPY 378 (472)
T ss_pred CC--CCCHHHHHHHHHHHHhcCCCceeeeecccC
Confidence 24 57889999999999998764 555445554
No 77
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.45 E-value=4.7e-12 Score=114.89 Aligned_cols=194 Identities=16% Similarity=0.169 Sum_probs=131.2
Q ss_pred EEeccCCcCccCccccCCCCCC---ccCCCHHHHHHHHHHHhccCCCceEEEecCC-ccccCHHHHHHHHHHHhCCCCCC
Q 023640 24 CISSQVGCKMGCNFCATGTMGF---KSNLSSGEIVEQLVHASRLSNIRNVVFMGMG-EPLNNYAALVEAVRIMTGLPFQV 99 (279)
Q Consensus 24 ~i~~~~gCNl~C~yC~~~~~~~---~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~G-EPll~~~~i~~~i~~~~~~g~~~ 99 (279)
.+..+.+|+.+|.||..+.... ...++++++++.+.+... .|+..|.|+| | +|.+..+.+.++++.+++.+.
T Consensus 42 ~i~~T~~C~~~C~FC~~~~~~~~~~~y~ls~eeI~e~~~~~~~-~G~~~i~l~g-G~~p~~~~~~~~~i~~~Ik~~~~-- 117 (343)
T TIGR03551 42 NINFTNVCYGGCGFCAFRKRKGDADAYLLSLEEIAERAAEAWK-AGATEVCIQG-GIHPDLDGDFYLDILRAVKEEVP-- 117 (343)
T ss_pred ccccccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHH-CCCCEEEEEe-CCCCCCCHHHHHHHHHHHHHHCC--
Confidence 3556899999999998753211 134799999999998776 4899999998 7 777778888999999998731
Q ss_pred CCCeEEEE----------cCCchhh--hHHHhccCCCceEE-EEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhC
Q 023640 100 SPKRITVS----------TVGIVHA--INKFHSDLPGLNLA-VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 166 (279)
Q Consensus 100 ~~~~v~i~----------TNG~~~~--~~~l~~~~~~~~i~-iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~ 166 (279)
.+++... ++|.... +.+|++.+. ..+. .+.+..+++.++.+.+. +.++++.++.+ +.+++.|
T Consensus 118 -~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl-~~i~~~~~E~~~~~v~~~i~~~--~~~~~~~~~~i-~~a~~~G 192 (343)
T TIGR03551 118 -GMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGL-DSMPGTAAEILDDEVRKVICPD--KLSTAEWIEII-KTAHKLG 192 (343)
T ss_pred -CceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCc-ccccCcchhhcCHHHHHhcCCC--CCCHHHHHHHH-HHHHHcC
Confidence 1344432 5665432 456666541 2233 24456677888888642 24788899999 6778888
Q ss_pred CeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-E---EEEecC--CCCCCCCc-------CCCCHHHHHHHHHHHH
Q 023640 167 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-V---NLIPFN--PIGSVSQF-------RTSSDDKVSSFQKILR 230 (279)
Q Consensus 167 ~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i---~l~~~~--p~~~~~~~-------~~~~~e~l~~~~~~l~ 230 (279)
.++..- ++-|+.++.++..+.+.++++++.. . .++|++ |. ++.. +..+.++..+.....+
T Consensus 193 i~v~s~--~i~G~~Et~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~--gT~l~~~~~~~~~~~~~~~lr~iAv~R 265 (343)
T TIGR03551 193 IPTTAT--IMYGHVETPEHWVDHLLILREIQEETGGFTEFVPLPFVHY--NAPLYLKGMARPGPTGREDLKVHAIAR 265 (343)
T ss_pred Ccccce--EEEecCCCHHHHHHHHHHHHHhhHHhCCeeEEEeccccCC--CCccccccCCCCCCCHHHHHHHHHHHH
Confidence 876543 3346667889999999999988753 2 233433 32 2222 3357777777766655
No 78
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=99.45 E-value=8.3e-12 Score=113.00 Aligned_cols=194 Identities=14% Similarity=0.179 Sum_probs=121.2
Q ss_pred EEEeccCCcCccCccccCCCC-CCccCCCHHHHHHHHHHHhccCCCceEEEecCCcc-ccCH------------HHHHHH
Q 023640 23 LCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEP-LNNY------------AALVEA 88 (279)
Q Consensus 23 l~i~~~~gCNl~C~yC~~~~~-~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEP-ll~~------------~~i~~~ 88 (279)
.++..|++||.+|.||..... +..+.++++++++.+.++... |+..|.|+| ||+ .+.+ ..+.+.
T Consensus 14 ~~i~~Tn~C~~~C~fC~~~~~~~~~~~ls~eei~~~~~~~~~~-G~~ei~l~g-G~~p~~~~~~~~~~~~~~g~~~~~~~ 91 (336)
T PRK06245 14 VFIPLTYECRNRCGYCTFRRDPGQPSLLSPEEVKEILRRGADA-GCTEALFTF-GEVPDESYERIKEQLAEMGYSSILEY 91 (336)
T ss_pred eeeeccccccCCCccCCCcCCCCccCcCCHHHHHHHHHHHHHC-CCCEEEEec-CCCCccchhhhhhhhhhhhHHHHHHH
Confidence 455668999999999976432 233478999999999988764 889999999 998 3331 223344
Q ss_pred H----HHHhCCCCCCCCCeEEEEcCCchhh---hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 023640 89 V----RIMTGLPFQVSPKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 161 (279)
Q Consensus 89 i----~~~~~~g~~~~~~~v~i~TNG~~~~---~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~ 161 (279)
+ +.+.+.| ... .+|....+ +..+++.. .++.+.+++.++...+.+....+...+++.++.+ +.
T Consensus 92 i~~i~~~~~~~g-----~~~--~~~~~~lt~e~i~~Lk~ag--~~l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i-~~ 161 (336)
T PRK06245 92 LYDLCELALEEG-----LLP--HTNAGILTREEMEKLKEVN--ASMGLMLEQTSPRLLNTVHRGSPGKDPELRLETI-EN 161 (336)
T ss_pred HHHHHHHHhhcC-----CCc--cccCCCCCHHHHHHHHHhC--CCCCCCccccchhhHHhhccCCCCCCHHHHHHHH-HH
Confidence 4 3333333 122 34442222 33444432 3455677888888776553223345678889998 55
Q ss_pred HHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCC-----cE-EEEEecCCCCC--CCCcCCCCHHHHHHHHHHHH
Q 023640 162 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ-----VV-VNLIPFNPIGS--VSQFRTSSDDKVSSFQKILR 230 (279)
Q Consensus 162 ~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~-----~~-i~l~~~~p~~~--~~~~~~~~~e~l~~~~~~l~ 230 (279)
+++.|.++...++ =|+.++.+++.+..+.+.+++ +. +.+.+|.|.+. ......++.+++.++....+
T Consensus 162 a~~~Gi~~~~~~i--~G~gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~l~~ia~~R 236 (336)
T PRK06245 162 AGKLKIPFTTGIL--IGIGETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVALAR 236 (336)
T ss_pred HHHcCCceeeeee--eECCCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHHHHHHHHHH
Confidence 6667776543333 345678888888766766653 32 66778888741 22344567788777666554
No 79
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=99.45 E-value=1.3e-13 Score=116.13 Aligned_cols=171 Identities=20% Similarity=0.320 Sum_probs=121.1
Q ss_pred EeccCCcCccCccccCCCC----CCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCC-CCCC
Q 023640 25 ISSQVGCKMGCNFCATGTM----GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQV 99 (279)
Q Consensus 25 i~~~~gCNl~C~yC~~~~~----~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~-g~~~ 99 (279)
++.+..||++|.||.-... ...+.++..+++........ .+++.+-++| |||+.. +++.++...+.+. |+
T Consensus 15 islte~cnlrc~ycMpsegv~l~pk~~~lav~eilrl~~~F~~-qgv~knrLtg-geptIr-~di~~i~~g~~~l~gL-- 89 (323)
T KOG2876|consen 15 ISLTEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLAGLFAP-QGVDKNRLTG-GEPLIR-QDIVPIVAGLSSLPGL-- 89 (323)
T ss_pred hhhhhccccccceechhcCCcCccchhhcchhhhHHhhhhhhH-hhhhhhhhcC-CCCccc-ccccchhhhhhcccch--
Confidence 4567899999999976422 22345677888886665554 3788999999 999997 6688888877776 43
Q ss_pred CCCeEEEEcCCchhh--hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhh-CCeEEEEEEEe
Q 023640 100 SPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIML 176 (279)
Q Consensus 100 ~~~~v~i~TNG~~~~--~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~-~~~v~i~~vv~ 176 (279)
..+.|+|||..+. ..++.+.+ ...+.+|+|....+.+..+++ ...+.+++.+++ .+.+. ..++.++.+++
T Consensus 90 --ks~~ITtng~vl~R~lp~lhkag-lssiNiSldtl~~aKfa~~~r---r~g~v~V~~~iq-~a~~lgy~pvkvn~v~~ 162 (323)
T KOG2876|consen 90 --KSIGITTNGLVLARLLPQLHKAG-LSSINISLDTLVRAKFAKLTR---RKGFVKVWASIQ-LAIELGYNPVKVNCVVM 162 (323)
T ss_pred --hhhceeccchhhhhhhhHHHhhc-ccchhhhhhhhhHHHHHHHhh---hccHHHHHHHHh-HHhhhCCCCcceeeEEE
Confidence 6899999997543 23344443 356789999888877777754 367899999994 44433 34589999999
Q ss_pred CCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCC
Q 023640 177 DGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIG 209 (279)
Q Consensus 177 ~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~ 209 (279)
++.|++ ++-+++.+=+.....+.++.|+|+.
T Consensus 163 k~~n~~--ev~Dfv~~tr~~p~DVrfIe~mpf~ 193 (323)
T KOG2876|consen 163 KGLNED--EVFDFVLLTRMRPLDVRFIEFMPFD 193 (323)
T ss_pred eccCCC--cccceeeecCCCCcceEEEEecccC
Confidence 999875 3445444334444567778888874
No 80
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=99.44 E-value=1.7e-11 Score=109.63 Aligned_cols=197 Identities=17% Similarity=0.162 Sum_probs=131.8
Q ss_pred EEEeccCCcCccCccccCCCCC---CccCCCHHHHHHHHHHHhccCCCceEEEecCC-ccccCHHHHHHHHHHHhCCCCC
Q 023640 23 LCISSQVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMG-EPLNNYAALVEAVRIMTGLPFQ 98 (279)
Q Consensus 23 l~i~~~~gCNl~C~yC~~~~~~---~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~G-EPll~~~~i~~~i~~~~~~g~~ 98 (279)
.++..+.+|+.+|.||..+... ....++++++++.+.+... .|+..|.|+| | .|....+.+.++++.+++.+.
T Consensus 7 ~~i~~T~~C~~~C~FC~~~~~~~~~~~~~ls~eeI~~~~~~~~~-~G~~~i~l~g-g~~~~~~~~~~~~i~~~Ik~~~~- 83 (309)
T TIGR00423 7 RNINFTNICVGKCKFCAFRAREKDKDAYVLSLEEILEKVKEAVA-KGATEVCIQG-GLNPQLDIEYYEELFRAIKQEFP- 83 (309)
T ss_pred eeecCccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHH-CCCCEEEEec-CCCCCCCHHHHHHHHHHHHHHCC-
Confidence 4566789999999999875321 1246899999999987765 4789999999 8 566778889999999998741
Q ss_pred CCCCeEEEE----------cCCchh-h-hHHHhccCCCceEE-EEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhh
Q 023640 99 VSPKRITVS----------TVGIVH-A-INKFHSDLPGLNLA-VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 165 (279)
Q Consensus 99 ~~~~~v~i~----------TNG~~~-~-~~~l~~~~~~~~i~-iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~ 165 (279)
.+++.-. ++|... + +++|++.+ ...+. ++.+..+++.++.+.+. +.+.++.++.+ +.+++.
T Consensus 84 --~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAG-l~~i~~~g~E~l~~~~~~~i~~~--~~t~~~~l~~i-~~a~~~ 157 (309)
T TIGR00423 84 --DVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAG-LDSMPGTGAEILDDSVRRKICPN--KLSSDEWLEVI-KTAHRL 157 (309)
T ss_pred --CceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcC-CCcCCCCcchhcCHHHHHhhCCC--CCCHHHHHHHH-HHHHHc
Confidence 1333322 345432 2 45566654 22342 57777788888888653 35788888999 567888
Q ss_pred CCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-E---EEEe--cCCCC-C-CCC--cCCCCHHHHHHHHHHHH
Q 023640 166 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-V---NLIP--FNPIG-S-VSQ--FRTSSDDKVSSFQKILR 230 (279)
Q Consensus 166 ~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i---~l~~--~~p~~-~-~~~--~~~~~~e~l~~~~~~l~ 230 (279)
|+++...++ =|+.++.++..+.+.++++++.. . .++| |.|.+ + ... .++++.++..+....++
T Consensus 158 Gi~~~s~~i--iG~~Et~ed~~~~l~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~~R 230 (309)
T TIGR00423 158 GIPTTATMM--FGHVENPEHRVEHLLRIRKIQEKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAISR 230 (309)
T ss_pred CCCceeeEE--ecCCCCHHHHHHHHHHHHhhchhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHHHH
Confidence 887764433 35567888999999999887653 1 2233 43432 1 111 14567777777766655
No 81
>PRK05481 lipoyl synthase; Provisional
Probab=99.43 E-value=4.9e-11 Score=105.54 Aligned_cols=204 Identities=15% Similarity=0.161 Sum_probs=137.9
Q ss_pred CceEEEEeccCCcCccCccccCCCCCCccCCCHHHHHHHHHHHhccCCCceEEEecCCc----cccCHHHHHHHHHHHhC
Q 023640 19 PRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE----PLNNYAALVEAVRIMTG 94 (279)
Q Consensus 19 ~~~~l~i~~~~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GE----Pll~~~~i~~~i~~~~~ 94 (279)
.+...|+..+.||+.+|.||..+... .+.++++++++.+.++.. .|++.|.|+| |+ |....+.+.++++.+++
T Consensus 51 ~~~~~fi~is~GC~~~C~FC~i~~~r-~~s~~~eeI~~ea~~l~~-~G~kEI~L~g-g~~~d~~~~~~~~l~~Ll~~I~~ 127 (289)
T PRK05481 51 RGTATFMILGDICTRRCPFCDVATGR-PLPLDPDEPERVAEAVAR-MGLKYVVITS-VDRDDLPDGGAQHFAETIRAIRE 127 (289)
T ss_pred CCeEEEEEecccccCCCCCceeCCCC-CCCCCHHHHHHHHHHHHH-CCCCEEEEEE-eeCCCcccccHHHHHHHHHHHHh
Confidence 44566666789999999999876532 356899999999998776 4899999999 87 33334578899998887
Q ss_pred CCCCCCCCeEEEEcCCch---hhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEE
Q 023640 95 LPFQVSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 171 (279)
Q Consensus 95 ~g~~~~~~~v~i~TNG~~---~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i 171 (279)
.. +...+.+.|.-.. ..+.++.+.+ ..+.-..+-+.+++++.+.+ +.+.+..++.++ .+++.-..+.+
T Consensus 128 ~~---p~irI~~l~~~~~~~~e~L~~l~~ag--~~i~~~~~ets~~vlk~m~r---~~t~e~~le~i~-~ar~~~pgi~~ 198 (289)
T PRK05481 128 LN---PGTTIEVLIPDFRGRMDALLTVLDAR--PDVFNHNLETVPRLYKRVRP---GADYERSLELLK-RAKELHPGIPT 198 (289)
T ss_pred hC---CCcEEEEEccCCCCCHHHHHHHHhcC--cceeeccccChHHHHHHhCC---CCCHHHHHHHHH-HHHHhCCCCeE
Confidence 41 1145666554221 2233444443 23321222234677777753 478999999994 45555122444
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCc---CCCCHHHHHHHHHHHHhcCCeE
Q 023640 172 EYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQF---RTSSDDKVSSFQKILRGSYNIR 236 (279)
Q Consensus 172 ~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~---~~~~~e~l~~~~~~l~~~~gi~ 236 (279)
.+.++-|+.++++++.+..+++.++++. +++.+|-|. ..+.+ .....++++++.++.. +.|+.
T Consensus 199 ~t~~IvGfGET~ed~~~tl~~lrel~~d~v~if~Ys~p-a~k~~~v~~~~k~~r~~~l~~~~~-~i~~~ 265 (289)
T PRK05481 199 KSGLMVGLGETDEEVLEVMDDLRAAGVDILTIGQYLQP-SRKHLPVERYVTPEEFDEYKEIAL-ELGFL 265 (289)
T ss_pred eeeeEEECCCCHHHHHHHHHHHHhcCCCEEEEEccCCC-ccccCCCCCcCCHHHHHHHHHHHH-HcCch
Confidence 4555557789999999999999999986 888888772 22122 2346788888888888 77763
No 82
>PRK06267 hypothetical protein; Provisional
Probab=99.42 E-value=5.6e-11 Score=107.99 Aligned_cols=188 Identities=15% Similarity=0.197 Sum_probs=132.6
Q ss_pred eccCCcC--ccCccccCCCCC------CccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCC
Q 023640 26 SSQVGCK--MGCNFCATGTMG------FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPF 97 (279)
Q Consensus 26 ~~~~gCN--l~C~yC~~~~~~------~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~ 97 (279)
..+++|| .+|.||..+... ....++++++++++..+.+. |++.+.++| |+++. .+.+.++++.+++.+.
T Consensus 32 ~~S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~-Gv~~~~lsg-G~~~~-~~el~~i~e~I~~~~~ 108 (350)
T PRK06267 32 FLGWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRI-GWKLEFISG-GYGYT-TEEINDIAEMIAYIQG 108 (350)
T ss_pred eecCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHc-CCCEEEEec-CCCCC-HHHHHHHHHHHHHhhC
Confidence 3469999 779999765321 12457899999999877654 678888999 99955 5778889888877631
Q ss_pred CCCCCeEEEEcCCchhhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeC
Q 023640 98 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLD 177 (279)
Q Consensus 98 ~~~~~~v~i~TNG~~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~ 177 (279)
..+.+...... ...+.... ...+...+++.+++.+..+.+ ..++++.++.+ +.+++.|.++...+++
T Consensus 109 ----~~~~~s~G~~d--~~~~~~~~-l~Gv~g~~ET~~~~~~~~i~~---~~s~ed~~~~l-~~ak~aGi~v~~g~Ii-- 175 (350)
T PRK06267 109 ----CKQYLNVGIID--FLNINLNE-IEGVVGAVETVNPKLHREICP---GKPLDKIKEML-LKAKDLGLKTGITIIL-- 175 (350)
T ss_pred ----CceEeecccCC--HHHHhhcc-ccCceeeeecCCHHHHHhhCC---CCCHHHHHHHH-HHHHHcCCeeeeeEEE--
Confidence 23444433222 12222211 223456788888999988865 36899999999 5677889887666555
Q ss_pred CCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCC---CcCCCCHHHHHHHHHHHH
Q 023640 178 GVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVS---QFRTSSDDKVSSFQKILR 230 (279)
Q Consensus 178 g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~---~~~~~~~e~l~~~~~~l~ 230 (279)
|..++.+++.++++++.++++. +.+.++.|. +++ +.++++.+++.++...++
T Consensus 176 GlgEt~ed~~~~l~~l~~l~~d~v~~~~L~P~-pGTp~~~~~~~s~~e~lr~ia~~R 231 (350)
T PRK06267 176 GLGETEDDIEKLLNLIEELDLDRITFYSLNPQ-KGTIFENKPSVTTLEYMNWVSSVR 231 (350)
T ss_pred eCCCCHHHHHHHHHHHHHcCCCEEEEEeeeEC-CCCcCCCCCCCCHHHHHHHHHHHH
Confidence 3466889999999999999875 667777776 333 345678888888877665
No 83
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=99.40 E-value=1.1e-10 Score=109.83 Aligned_cols=176 Identities=11% Similarity=0.132 Sum_probs=120.1
Q ss_pred eEEEEeccCCcCccCccccCCCCCC-ccCC---CHHHHHHHHHHHhc----cCCCceEEEecCCcccc-CHHHHHHHHHH
Q 023640 21 STLCISSQVGCKMGCNFCATGTMGF-KSNL---SSGEIVEQLVHASR----LSNIRNVVFMGMGEPLN-NYAALVEAVRI 91 (279)
Q Consensus 21 ~~l~i~~~~gCNl~C~yC~~~~~~~-~~~~---~~~ei~~~i~~~~~----~~~~~~I~fsG~GEPll-~~~~i~~~i~~ 91 (279)
..+|+-. .-|+.+|.||....... .... -.+.+++++..... ...+..|.|.| |+|++ +++.+.++++.
T Consensus 50 ~~LYvHI-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gG-GtPs~l~~~~l~~ll~~ 127 (453)
T PRK09249 50 LSLYVHI-PFCRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAALLGPGRPVSQLHWGG-GTPTFLSPEQLRRLMAL 127 (453)
T ss_pred eEEEEEe-CCccccCCCCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECC-cccccCCHHHHHHHHHH
Confidence 4566543 77999999997643211 1111 23445555553322 12478999999 99997 47889999999
Q ss_pred HhCCCCCC-CCCeEEEEcCCchhh---hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCC
Q 023640 92 MTGLPFQV-SPKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 167 (279)
Q Consensus 92 ~~~~g~~~-~~~~v~i~TNG~~~~---~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~ 167 (279)
+++. +++ ....+++.||+...+ +..+.+.+ ...+.|++++.+++..+.+.+ ..+++.+++++ +.+++.|.
T Consensus 128 l~~~-~~~~~~~e~tie~np~~lt~e~l~~l~~aG-~~risiGvqS~~~~~L~~l~r---~~~~~~~~~ai-~~l~~~G~ 201 (453)
T PRK09249 128 LREH-FNFAPDAEISIEIDPRELDLEMLDALRELG-FNRLSLGVQDFDPEVQKAVNR---IQPFEFTFALV-EAARELGF 201 (453)
T ss_pred HHHh-CCCCCCCEEEEEecCCcCCHHHHHHHHHcC-CCEEEECCCCCCHHHHHHhCC---CCCHHHHHHHH-HHHHHcCC
Confidence 8875 221 125799999985432 33444443 356788999999998888743 46889999999 56677776
Q ss_pred -eEEEEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecC
Q 023640 168 -KIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFN 206 (279)
Q Consensus 168 -~v~i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~ 206 (279)
.+.+.+++ +|+ ++.+++.+.++++.++++. +.+.++.
T Consensus 202 ~~v~~dli~GlPg--qt~e~~~~~l~~~~~l~~~~i~~y~l~ 241 (453)
T PRK09249 202 TSINIDLIYGLPK--QTPESFARTLEKVLELRPDRLAVFNYA 241 (453)
T ss_pred CcEEEEEEccCCC--CCHHHHHHHHHHHHhcCCCEEEEccCc
Confidence 55555444 354 6788999999999999875 7766655
No 84
>PRK05660 HemN family oxidoreductase; Provisional
Probab=99.39 E-value=8.3e-11 Score=108.05 Aligned_cols=177 Identities=10% Similarity=0.109 Sum_probs=118.1
Q ss_pred EEEEeccCCcCccCccccCCCCCCccCCCHHH----HHHHHHHHh---ccCCCceEEEecCCccccC-HHHHHHHHHHHh
Q 023640 22 TLCISSQVGCKMGCNFCATGTMGFKSNLSSGE----IVEQLVHAS---RLSNIRNVVFMGMGEPLNN-YAALVEAVRIMT 93 (279)
Q Consensus 22 ~l~i~~~~gCNl~C~yC~~~~~~~~~~~~~~e----i~~~i~~~~---~~~~~~~I~fsG~GEPll~-~~~i~~~i~~~~ 93 (279)
++|+-. .-|+.+|.||+..........+.++ +++++.... ...++..|.|.| |+|++- .+.+.++++.++
T Consensus 8 ~lYiHi-PFC~~~C~yC~f~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GG-GtPs~l~~~~l~~ll~~l~ 85 (378)
T PRK05660 8 SLYIHI-PWCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGG-GTPSLFSAEAIQRLLDGVR 85 (378)
T ss_pred EEEEEe-CCccCcCCCCCCeecCCCCcCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCC-CccccCCHHHHHHHHHHHH
Confidence 455533 6799999999874322222333333 333333211 113578999999 999985 577889999888
Q ss_pred CCCCCC-CCCeEEEEcCCchhh---hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCe-
Q 023640 94 GLPFQV-SPKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK- 168 (279)
Q Consensus 94 ~~g~~~-~~~~v~i~TNG~~~~---~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~- 168 (279)
+. +++ ....+++.||..... +..+.+.+ ...+.|++++.+++..+.+.+ ..+.+++++++ +.+++.|..
T Consensus 86 ~~-~~~~~~~eit~e~np~~l~~e~l~~Lk~~G-v~risiGvqS~~~~~L~~l~r---~~~~~~~~~ai-~~~~~~G~~~ 159 (378)
T PRK05660 86 AR-LPFAPDAEITMEANPGTVEADRFVGYQRAG-VNRISIGVQSFSEEKLKRLGR---IHGPDEAKRAA-KLAQGLGLRS 159 (378)
T ss_pred Hh-CCCCCCcEEEEEeCcCcCCHHHHHHHHHcC-CCEEEeccCcCCHHHHHHhCC---CCCHHHHHHHH-HHHHHcCCCe
Confidence 74 211 125899999974432 33455544 356889999999999988843 46899999999 566777764
Q ss_pred EEEEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 169 IFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 169 v~i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
+.+..+. +|+ ++.+++.+.++++.++++. +.+.++.+.
T Consensus 160 v~~dli~Glpg--qt~~~~~~~l~~~~~l~p~~is~y~l~~~ 199 (378)
T PRK05660 160 FNLDLMHGLPD--QSLEEALDDLRQAIALNPPHLSWYQLTIE 199 (378)
T ss_pred EEEEeecCCCC--CCHHHHHHHHHHHHhcCCCeEEeeccEec
Confidence 3343332 344 6788999999999998875 666655543
No 85
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=99.39 E-value=5.9e-11 Score=108.43 Aligned_cols=171 Identities=14% Similarity=0.141 Sum_probs=114.9
Q ss_pred CCcCccCccccCCCCCCccCC---CHHHHHHHHHHHhc-c--CCCceEEEecCCccccC-HHHHHHHHHHHhCCCCCC-C
Q 023640 29 VGCKMGCNFCATGTMGFKSNL---SSGEIVEQLVHASR-L--SNIRNVVFMGMGEPLNN-YAALVEAVRIMTGLPFQV-S 100 (279)
Q Consensus 29 ~gCNl~C~yC~~~~~~~~~~~---~~~ei~~~i~~~~~-~--~~~~~I~fsG~GEPll~-~~~i~~~i~~~~~~g~~~-~ 100 (279)
.-|+.+|.||+.......... -.+.+.+++..... . ..+..|.|.| |+|++. .+.+.++++.+++. +.+ .
T Consensus 8 PFC~~~C~yC~f~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~v~~i~~GG-GtPs~l~~~~l~~ll~~i~~~-~~~~~ 85 (360)
T TIGR00539 8 PFCENKCGYCDFNSYENKSGPKEEYTQALCQDLKHALSQTDQEPLESIFIGG-GTPNTLSVEAFERLFESIYQH-ASLSD 85 (360)
T ss_pred CCCcCcCCCCCCcccCcCccCHHHHHHHHHHHHHHHHHhcCCCcccEEEeCC-CchhcCCHHHHHHHHHHHHHh-CCCCC
Confidence 679999999987433111111 12233334433221 1 2378999999 999864 67888888877653 111 1
Q ss_pred CCeEEEEcCCchhh---hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCe-EEEEEEE-
Q 023640 101 PKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIM- 175 (279)
Q Consensus 101 ~~~v~i~TNG~~~~---~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~-v~i~~vv- 175 (279)
...+++.||+...+ +..+.+.+ ...+.|++++.+++..+.+. +..+++++++++ +.+++.|.. +.+..++
T Consensus 86 ~~eitie~np~~lt~e~l~~l~~~G-v~risiGvqS~~~~~l~~lg---R~~~~~~~~~ai-~~l~~~G~~~v~~dli~G 160 (360)
T TIGR00539 86 DCEITTEANPELITAEWCKGLKGAG-INRLSLGVQSFRDDKLLFLG---RQHSAKNIAPAI-ETALKSGIENISLDLMYG 160 (360)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHcC-CCEEEEecccCChHHHHHhC---CCCCHHHHHHHH-HHHHHcCCCeEEEeccCC
Confidence 26899999985433 33444543 35678999999999998883 346799999999 567777764 5554444
Q ss_pred eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 176 LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 176 ~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
+| +++.+++.+.++++.++++. +.+.++.|.
T Consensus 161 lP--gqt~~~~~~~l~~~~~l~~~~is~y~l~~~ 192 (360)
T TIGR00539 161 LP--LQTLNSLKEELKLAKELPINHLSAYALSVE 192 (360)
T ss_pred CC--CCCHHHHHHHHHHHHccCCCEEEeecceEc
Confidence 34 46888999999999999874 777776665
No 86
>PRK12928 lipoyl synthase; Provisional
Probab=99.38 E-value=1.4e-10 Score=102.40 Aligned_cols=205 Identities=14% Similarity=0.161 Sum_probs=140.8
Q ss_pred CceEEEEeccCCcCccCccccCCCCCCccCCCHHHHHHHHHHHhccCCCceEEEecCCc----cccCHHHHHHHHHHHhC
Q 023640 19 PRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE----PLNNYAALVEAVRIMTG 94 (279)
Q Consensus 19 ~~~~l~i~~~~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GE----Pll~~~~i~~~i~~~~~ 94 (279)
.+..-|+..+.||+.+|.||..+. +....++++++++.+.++.. .|++.|.++| |. |-...+.+.++++.+++
T Consensus 58 ~~~~tfv~is~gC~~~C~FCa~~~-g~~~~~~~eei~~~a~~~~~-~G~keivitg-~~~dDl~d~g~~~~~ell~~Ik~ 134 (290)
T PRK12928 58 QGTATFLIMGSICTRRCAFCQVDK-GRPMPLDPDEPERVAEAVAA-LGLRYVVLTS-VARDDLPDGGAAHFVATIAAIRA 134 (290)
T ss_pred CCEEEEEEecccccCcCCCCCccC-CCCCCCCHHHHHHHHHHHHH-CCCCEEEEEE-EeCCcccccCHHHHHHHHHHHHh
Confidence 344555666899999999998755 23446889999999987765 4789999999 64 33334678899999988
Q ss_pred CCCCCCCCeEEEEcCCchh----hhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEE
Q 023640 95 LPFQVSPKRITVSTVGIVH----AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 170 (279)
Q Consensus 95 ~g~~~~~~~v~i~TNG~~~----~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~ 170 (279)
.. +...+.+.|-.+.. .+..+.+.++. -+..-+.+ .+++++.+.+ ..++++.++.+ +.+++.+..+.
T Consensus 135 ~~---p~~~I~~ltp~~~~~~~e~L~~l~~Ag~~-i~~hnlEt-~~~vl~~m~r---~~t~e~~le~l-~~ak~~gp~i~ 205 (290)
T PRK12928 135 RN---PGTGIEVLTPDFWGGQRERLATVLAAKPD-VFNHNLET-VPRLQKAVRR---GADYQRSLDLL-ARAKELAPDIP 205 (290)
T ss_pred cC---CCCEEEEeccccccCCHHHHHHHHHcCch-hhcccCcC-cHHHHHHhCC---CCCHHHHHHHH-HHHHHhCCCce
Confidence 63 12566666554321 23445554321 11112343 3778877754 47899999999 55677775566
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEecC-CCCCCCCc-CCCCHHHHHHHHHHHHhcCCeE
Q 023640 171 IEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFN-PIGSVSQF-RTSSDDKVSSFQKILRGSYNIR 236 (279)
Q Consensus 171 i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~-p~~~~~~~-~~~~~e~l~~~~~~l~~~~gi~ 236 (279)
+.+.++-|+.++.+++.+..+++.++++. +.+.+|- |......+ +-.++++++.+.++.. +.|..
T Consensus 206 ~~s~iIvG~GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~-~~g~~ 273 (290)
T PRK12928 206 TKSGLMLGLGETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIAR-ELGFS 273 (290)
T ss_pred ecccEEEeCCCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeeccCHHHHHHHHHHHH-HcCCc
Confidence 66666668899999999999999999986 7777774 43211111 2357999999999988 77863
No 87
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=99.38 E-value=1.7e-10 Score=108.36 Aligned_cols=180 Identities=12% Similarity=0.130 Sum_probs=121.6
Q ss_pred CCCCceEEEEeccCCcCccCccccCCCCCC-ccCCC---HHHHHHHHHHHhc----cCCCceEEEecCCcccc-CHHHHH
Q 023640 16 PGGPRSTLCISSQVGCKMGCNFCATGTMGF-KSNLS---SGEIVEQLVHASR----LSNIRNVVFMGMGEPLN-NYAALV 86 (279)
Q Consensus 16 p~~~~~~l~i~~~~gCNl~C~yC~~~~~~~-~~~~~---~~ei~~~i~~~~~----~~~~~~I~fsG~GEPll-~~~~i~ 86 (279)
|.+...++++-. .-|+.+|.||....... ..... .+.+++++..... ..++..|.|.| |+|++ .++.+.
T Consensus 46 ~~~~~~~LYvHI-PfC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgG-GTPs~l~~~~l~ 123 (453)
T PRK13347 46 GPEEPVSLYLHV-PFCRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGG-GTPTILNPDQFE 123 (453)
T ss_pred cCCCceEEEEEe-CCccccCCCCCCcCcCccccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcC-cccccCCHHHHH
Confidence 445566777765 56999999997643211 11111 2344555543322 12568999999 99995 578899
Q ss_pred HHHHHHhCC-CCCCCCCeEEEEcCCchhh---hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHH
Q 023640 87 EAVRIMTGL-PFQVSPKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 162 (279)
Q Consensus 87 ~~i~~~~~~-g~~~~~~~v~i~TNG~~~~---~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~ 162 (279)
++++.+++. ++. ....+++.||....+ +..+.+.+ ...+.|++++.+++..+.+.+ ..+++.+.+++ +.+
T Consensus 124 ~ll~~i~~~~~~~-~~~e~tie~~p~~lt~e~l~~L~~~G-~~rvsiGvQS~~~~vl~~l~R---~~~~~~~~~ai-~~l 197 (453)
T PRK13347 124 RLMAALRDAFDFA-PEAEIAVEIDPRTVTAEMLQALAALG-FNRASFGVQDFDPQVQKAINR---IQPEEMVARAV-ELL 197 (453)
T ss_pred HHHHHHHHhCCCC-CCceEEEEeccccCCHHHHHHHHHcC-CCEEEECCCCCCHHHHHHhCC---CCCHHHHHHHH-HHH
Confidence 999999875 211 125788999985432 33344443 346778999999999988843 46899999999 566
Q ss_pred HhhCCe-EEEEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEec
Q 023640 163 KNSQQK-IFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPF 205 (279)
Q Consensus 163 ~~~~~~-v~i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~ 205 (279)
++.|.. +.+.+++ +|+ ++.+++.+.++++.++++. +.+.++
T Consensus 198 r~~G~~~v~~dli~GlPg--qt~e~~~~tl~~~~~l~p~~i~~y~l 241 (453)
T PRK13347 198 RAAGFESINFDLIYGLPH--QTVESFRETLDKVIALSPDRIAVFGY 241 (453)
T ss_pred HhcCCCcEEEeEEEeCCC--CCHHHHHHHHHHHHhcCCCEEEEecc
Confidence 777764 5555444 454 6889999999999999875 666555
No 88
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=99.37 E-value=2.4e-10 Score=101.28 Aligned_cols=205 Identities=12% Similarity=0.113 Sum_probs=137.6
Q ss_pred CceEEEEeccCCcCccCccccCCCCCCccCCCHHHHHHHHHHHhccCCCceEEEecCCc-ccc---CHHHHHHHHHHHhC
Q 023640 19 PRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE-PLN---NYAALVEAVRIMTG 94 (279)
Q Consensus 19 ~~~~l~i~~~~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GE-Pll---~~~~i~~~i~~~~~ 94 (279)
.+...|+..+.||+.+|.||...........+++++.+.+..+.. .|++.|.|+| |+ +-+ ..+.+.++++.+++
T Consensus 61 ~~tatfm~i~~gC~~~C~FC~v~~~rg~~~~~~eei~~~a~~~~~-~GlkevvLTs-v~~ddl~d~g~~~l~~li~~I~~ 138 (302)
T TIGR00510 61 HGTATFMILGDICTRRCPFCDVAHGRNPLPPDPEEPAKLAETIKD-MGLKYVVITS-VDRDDLEDGGASHLAECIEAIRE 138 (302)
T ss_pred CCEEEEEecCcCcCCCCCcCCccCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEEEe-ecCCCcccccHHHHHHHHHHHHh
Confidence 445666667899999999998754322223578888888887775 4899999999 65 222 13568899999988
Q ss_pred CCCCCCCCeEEEEcCCc---hhhhHHHhccCCCce-EEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEE
Q 023640 95 LPFQVSPKRITVSTVGI---VHAINKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 170 (279)
Q Consensus 95 ~g~~~~~~~v~i~TNG~---~~~~~~l~~~~~~~~-i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~ 170 (279)
.. +...+.+.|.-. ...+..+++.+ .+ +..-+++. +.++..+.+ ..++++.++.++. +++....+.
T Consensus 139 ~~---p~i~Ievl~~d~~g~~e~l~~l~~aG--~dv~~hnlEt~-~~l~~~vrr---~~t~e~~Le~l~~-ak~~~pgi~ 208 (302)
T TIGR00510 139 KL---PNIKIETLVPDFRGNIAALDILLDAP--PDVYNHNLETV-ERLTPFVRP---GATYRWSLKLLER-AKEYLPNLP 208 (302)
T ss_pred cC---CCCEEEEeCCcccCCHHHHHHHHHcC--chhhcccccch-HHHHHHhCC---CCCHHHHHHHHHH-HHHhCCCCe
Confidence 62 125677776432 22244455553 23 33445544 667777653 4789999999954 555543456
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEec-CCCCCCCCc-CCCCHHHHHHHHHHHHhcCCeE
Q 023640 171 IEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPF-NPIGSVSQF-RTSSDDKVSSFQKILRGSYNIR 236 (279)
Q Consensus 171 i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~-~p~~~~~~~-~~~~~e~l~~~~~~l~~~~gi~ 236 (279)
+.+-++-|+.++++++.+..++++++++. +.+.+| .|....... .-.++++++.+.++.. +.|..
T Consensus 209 ~~TgiIVGlGETeee~~etl~~Lrelg~d~v~igqYl~p~~~~~~v~~~~~p~~f~~~~~~a~-~~gf~ 276 (302)
T TIGR00510 209 TKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRRHLPVKRYVSPEEFDYYRSVAL-EMGFL 276 (302)
T ss_pred ecceEEEECCCCHHHHHHHHHHHHhcCCCEEEeecccCCCCCCCccccCCCHHHHHHHHHHHH-HcCCh
Confidence 66666668899999999999999999986 666664 453211111 2357899999988888 77763
No 89
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=99.36 E-value=2.1e-10 Score=105.42 Aligned_cols=177 Identities=15% Similarity=0.168 Sum_probs=116.3
Q ss_pred EEEEeccCCcCccCccccCCCCCCccCC---CHHHHHHHHHHHhccCCCceEEEecCCcccc-CHHHHHHHHHHHhCCCC
Q 023640 22 TLCISSQVGCKMGCNFCATGTMGFKSNL---SSGEIVEQLVHASRLSNIRNVVFMGMGEPLN-NYAALVEAVRIMTGLPF 97 (279)
Q Consensus 22 ~l~i~~~~gCNl~C~yC~~~~~~~~~~~---~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll-~~~~i~~~i~~~~~~g~ 97 (279)
++|+-. .-||.+|.||+.......... .++.+++++.......++..|.|.| |+|++ .++.+..+++.+++.+.
T Consensus 5 ~lYiHi-PfC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gG-Gtps~l~~~~l~~L~~~i~~~~~ 82 (374)
T PRK05799 5 SLYIHI-PFCKQKCLYCDFPSYSGKEDLMMEYIKALSKEIRNSTKNKKIKSIFIGG-GTPTYLSLEALEILKETIKKLNK 82 (374)
T ss_pred EEEEEe-CCccCCCCCCCCCcccCCcchHHHHHHHHHHHHHhhcCCCceeEEEECC-CcccCCCHHHHHHHHHHHHhCCC
Confidence 455533 679999999987543211111 2455556655432223577899999 99995 56666677777765432
Q ss_pred CCCCCeEEEEcCCchhh---hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCe-EEEEE
Q 023640 98 QVSPKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEY 173 (279)
Q Consensus 98 ~~~~~~v~i~TNG~~~~---~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~-v~i~~ 173 (279)
. ....+++.||....+ +..+.+.+ ...+.|++++.+++..+.+. +..+.+++++++ +.+++.|.. +.+.+
T Consensus 83 ~-~~~eitie~~p~~~t~e~l~~l~~~G-~~rvsiGvqS~~d~~L~~l~---R~~~~~~~~~ai-~~l~~~g~~~v~~dl 156 (374)
T PRK05799 83 K-EDLEFTVEGNPGTFTEEKLKILKSMG-VNRLSIGLQAWQNSLLKYLG---RIHTFEEFLENY-KLARKLGFNNINVDL 156 (374)
T ss_pred C-CCCEEEEEeCCCcCCHHHHHHHHHcC-CCEEEEECccCCHHHHHHcC---CCCCHHHHHHHH-HHHHHcCCCcEEEEe
Confidence 1 125789999984432 33444443 34677899999999888773 346799999999 566777764 54444
Q ss_pred EE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 174 IM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 174 vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
++ +| +++.+++.+.++++.++++. +.+.++.+.
T Consensus 157 i~GlP--gqt~e~~~~~l~~~~~l~~~~is~y~l~~~ 191 (374)
T PRK05799 157 MFGLP--NQTLEDWKETLEKVVELNPEHISCYSLIIE 191 (374)
T ss_pred ecCCC--CCCHHHHHHHHHHHHhcCCCEEEEeccEec
Confidence 43 24 46889999999999998864 666555544
No 90
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=99.35 E-value=2.2e-10 Score=104.28 Aligned_cols=195 Identities=15% Similarity=0.173 Sum_probs=126.4
Q ss_pred CCcCccCccccCCCCCCccCC---CHHHHHHHHHHHhc---cCCCceEEEecCCccc-cCHHHHHHHHHHHhCCCCCCCC
Q 023640 29 VGCKMGCNFCATGTMGFKSNL---SSGEIVEQLVHASR---LSNIRNVVFMGMGEPL-NNYAALVEAVRIMTGLPFQVSP 101 (279)
Q Consensus 29 ~gCNl~C~yC~~~~~~~~~~~---~~~ei~~~i~~~~~---~~~~~~I~fsG~GEPl-l~~~~i~~~i~~~~~~g~~~~~ 101 (279)
.-|+.+|.||........... ..+.+++++..... ..++..|.|.| |+|+ +.++.+.++++.+++. +. ..
T Consensus 8 PFC~~~C~yC~f~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGG-GTPs~l~~~~l~~ll~~i~~~-~~-~~ 84 (350)
T PRK08446 8 PFCESKCGYCAFNSYENKHDLKKEYMQALCLDLKFELEQFTDEKIESVFIGG-GTPSTVSAKFYEPIFEIISPY-LS-KD 84 (350)
T ss_pred CCccCcCCCCCCcCcCCCcccHHHHHHHHHHHHHHHHhhccCCceeEEEECC-CccccCCHHHHHHHHHHHHHh-cC-CC
Confidence 679999999987433211111 23445555553321 12578999999 9997 5677788888877764 11 12
Q ss_pred CeEEEEcCCchhh---hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCe-EEEEEEE-e
Q 023640 102 KRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIM-L 176 (279)
Q Consensus 102 ~~v~i~TNG~~~~---~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~-v~i~~vv-~ 176 (279)
..+++.+|....+ +..+.+.+ ...+.|++++.+++..+.+. +..+++++.+++ +.+++.|.. +.+..++ +
T Consensus 85 ~eitiE~nP~~~~~e~l~~l~~~G-vnRiSiGvQS~~~~~L~~lg---R~~~~~~~~~ai-~~lr~~g~~~v~iDli~Gl 159 (350)
T PRK08446 85 CEITTEANPNSATKAWLKGMKNLG-VNRISFGVQSFNEDKLKFLG---RIHSQKQIIKAI-ENAKKAGFENISIDLIYDT 159 (350)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHcC-CCEEEEecccCCHHHHHHcC---CCCCHHHHHHHH-HHHHHcCCCEEEEEeecCC
Confidence 5799999985432 33344443 34677899999998888773 346799999999 566777764 5555554 3
Q ss_pred CCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCc------CCCCHHHHHHHHHHHHhcCCe
Q 023640 177 DGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQF------RTSSDDKVSSFQKILRGSYNI 235 (279)
Q Consensus 177 ~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~------~~~~~e~l~~~~~~l~~~~gi 235 (279)
|+ ++.+++.+.++++.++++. +.+.++.+. +++.+ .+...+.+..+.+.++ ..|.
T Consensus 160 Pg--qt~~~~~~~l~~~~~l~~~~is~y~L~~~-~gT~l~~~~~~~~~~~~~~~~~~~~l~-~~Gy 221 (350)
T PRK08446 160 PL--DNKKLLKEELKLAKELPINHLSAYSLTIE-ENTPFFEKNHKKKDDENLAKFFIEQLE-ELGF 221 (350)
T ss_pred CC--CCHHHHHHHHHHHHhcCCCEEEeccceec-CCChhHHhhhcCCCHHHHHHHHHHHHH-HCCC
Confidence 54 5788999999999988875 666666554 22221 1223444566677777 6665
No 91
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.34 E-value=2.5e-10 Score=106.90 Aligned_cols=182 Identities=13% Similarity=0.230 Sum_probs=120.7
Q ss_pred CCceEEEEeccCCcCccCccccCCCC-CCccCCCHHHHHHHHHHHhccCCCceEEEec-----C-CccccCHHHHHHHHH
Q 023640 18 GPRSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMG-----M-GEPLNNYAALVEAVR 90 (279)
Q Consensus 18 ~~~~~l~i~~~~gCNl~C~yC~~~~~-~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG-----~-GEPll~~~~i~~~i~ 90 (279)
..+..+++.++.|||++|.||..+.. +..+..+++++++++...... |++.|.|+| + |++... ..+.++++
T Consensus 135 ~~~~~~~l~isrGC~~~CsfC~~p~~~g~~~sr~~e~Iv~Ei~~l~~~-G~keI~l~g~~~~~yG~d~~~~-~~~~~Ll~ 212 (440)
T PRK14334 135 QGKLSAHLTIMRGCNHHCTYCIVPTTRGPEVSRHPDLILRELELLKAA-GVQEVTLLGQNVNSYGVDQPGF-PSFAELLR 212 (440)
T ss_pred CCCeEEEEEeccCCCCCCcCCCcchhcCCCccCCHHHHHHHHHHHHHC-CCeEEEEEeccccccccCCCCc-CCHHHHHH
Confidence 34678888889999999999987543 233467899999999987653 777888865 1 343222 23567777
Q ss_pred HHhCCCCCCCCCeEEEEc-CCch--hh-hHHHhccC-CCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhh
Q 023640 91 IMTGLPFQVSPKRITVST-VGIV--HA-INKFHSDL-PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 165 (279)
Q Consensus 91 ~~~~~g~~~~~~~v~i~T-NG~~--~~-~~~l~~~~-~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~ 165 (279)
.+.+.|+ ..+.+.+ |... .+ +..+++.. .-..+.|++++.+++..+.+. +..+.+.+++.++ .+++.
T Consensus 213 ~l~~~~i----~~ir~~~~~p~~i~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~m~---R~~~~~~~~~~v~-~lr~~ 284 (440)
T PRK14334 213 LVGASGI----PRVKFTTSHPMNFTDDVIAAMAETPAVCEYIHLPVQSGSDRVLRRMA---REYRREKYLERIA-EIREA 284 (440)
T ss_pred HHHhcCC----cEEEEccCCcccCCHHHHHHHHhcCcCCCeEEeccccCCHHHHHHhC---CCCCHHHHHHHHH-HHHHh
Confidence 7766552 2355544 3322 22 22333321 123577899999999888764 3467888999994 45666
Q ss_pred CCeEEEEEEEeCC-CCCcHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 023640 166 QQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG 209 (279)
Q Consensus 166 ~~~v~i~~vv~~g-~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~ 209 (279)
+..+.+++-++-| -+++.+++++.++++.++++. +++.+|.|.+
T Consensus 285 ~~~i~i~~d~IvG~PgEt~ed~~~tl~~i~~l~~~~i~~f~ysp~p 330 (440)
T PRK14334 285 LPDVVLSTDIIVGFPGETEEDFQETLSLYDEVGYDSAYMFIYSPRP 330 (440)
T ss_pred CCCcEEEEeEEEECCCCCHHHHHHHHHHHHhcCCCEeeeeEeeCCC
Confidence 6555544433322 246889999999999999875 7777787763
No 92
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=99.33 E-value=1.7e-10 Score=107.30 Aligned_cols=176 Identities=15% Similarity=0.285 Sum_probs=120.2
Q ss_pred eEEEEeccCCcCccCccccCCCC-CCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCH------HHHHHHHHHHh
Q 023640 21 STLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNY------AALVEAVRIMT 93 (279)
Q Consensus 21 ~~l~i~~~~gCNl~C~yC~~~~~-~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~------~~i~~~i~~~~ 93 (279)
...++.++.|||++|.||..+.. +..+..+++++++++..+... |++.|.|+| .+-+.+. ..+.++++.+.
T Consensus 138 ~~~~i~isrGCp~~CsfC~~~~~~g~~r~r~~e~I~~Ei~~l~~~-g~~ei~l~~-~~~~~y~~d~~~~~~l~~Ll~~l~ 215 (414)
T TIGR01579 138 TRAFIKVQDGCNFFCSYCIIPFARGRSRSVPMEAILKQVKILVAK-GYKEIVLTG-VNLGSYGDDLKNGTSLAKLLEQIL 215 (414)
T ss_pred eEEEEEeccCcCCCCCCCceeeecCCCccCCHHHHHHHHHHHHHC-CCceEEEee-EccchhccCCCCCCcHHHHHHHHh
Confidence 34566678999999999987432 245678999999999987653 788999988 5554431 34778888887
Q ss_pred CC-CCCCCCCeEEEEcCC---chhh-hHHHhccCC-CceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHh--h
Q 023640 94 GL-PFQVSPKRITVSTVG---IVHA-INKFHSDLP-GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN--S 165 (279)
Q Consensus 94 ~~-g~~~~~~~v~i~TNG---~~~~-~~~l~~~~~-~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~--~ 165 (279)
+. +. ..+.+.+.- ...+ +..+++... ...+.+.+.+.+++..+.+. +..+.+.+.++++ .+++ .
T Consensus 216 ~~~~~----~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m~---R~~~~~~~~~~v~-~l~~~~~ 287 (414)
T TIGR01579 216 QIPGI----KRIRLSSIDPEDIDEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMR---RKYTRDDFLKLVN-KLRSVRP 287 (414)
T ss_pred cCCCC----cEEEEeCCChhhCCHHHHHHHHhcCccCCCeEECCCcCChHHHHhcC---CCCCHHHHHHHHH-HHHHhCC
Confidence 65 31 245554311 1112 222333221 13567888999999988874 3467889999994 4555 5
Q ss_pred CCeEEEEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 166 QQKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 166 ~~~v~i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
+..+...+++ .| +++++++.+.++++.+++.. +++.+|.|.
T Consensus 288 gi~i~~~~IvG~P--gET~ed~~~tl~~i~~~~~~~~~~~~~sp~ 330 (414)
T TIGR01579 288 DYAFGTDIIVGFP--GESEEDFQETLRMVKEIEFSHLHIFPYSAR 330 (414)
T ss_pred CCeeeeeEEEECC--CCCHHHHHHHHHHHHhCCCCEEEeeecCCC
Confidence 6655554444 34 47899999999999999875 788888887
No 93
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=99.32 E-value=3.6e-10 Score=106.38 Aligned_cols=176 Identities=11% Similarity=0.203 Sum_probs=121.0
Q ss_pred ceEEEEeccCCcCccCccccCCCCCC-ccCC---CHHHHHHHHHHHhcc----CCCceEEEecCCcccc-CHHHHHHHHH
Q 023640 20 RSTLCISSQVGCKMGCNFCATGTMGF-KSNL---SSGEIVEQLVHASRL----SNIRNVVFMGMGEPLN-NYAALVEAVR 90 (279)
Q Consensus 20 ~~~l~i~~~~gCNl~C~yC~~~~~~~-~~~~---~~~ei~~~i~~~~~~----~~~~~I~fsG~GEPll-~~~~i~~~i~ 90 (279)
...||+-. .-|+.+|.||....... .... ..+.+++++...... .++..|.|.| |+|++ .++.+.++++
T Consensus 49 ~~~lYiHi-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgG-GtP~~l~~~~l~~ll~ 126 (455)
T TIGR00538 49 PLSLYVHI-PFCHKACYFCGCNVIITRQKHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGG-GTPTYLSPEQISRLMK 126 (455)
T ss_pred ceEEEEEe-CCccCcCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECC-CCcCCCCHHHHHHHHH
Confidence 34566643 78999999998754211 1111 245566666544221 3678999999 99995 6788999999
Q ss_pred HHhCCCCCC-CCCeEEEEcCCchhh---hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhC
Q 023640 91 IMTGLPFQV-SPKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 166 (279)
Q Consensus 91 ~~~~~g~~~-~~~~v~i~TNG~~~~---~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~ 166 (279)
.+++. +.+ ....+++.||+...+ +..+.+.+ ...+.|++++.+++..+.+.+ ..+++.+.+++ +.+++.|
T Consensus 127 ~i~~~-~~~~~~~eitie~np~~l~~e~l~~lk~~G-~~risiGvqS~~~~~l~~l~r---~~~~~~~~~ai-~~l~~~G 200 (455)
T TIGR00538 127 LIREN-FPFNADAEISIEIDPRYITKDVIDALRDEG-FNRLSFGVQDFNKEVQQAVNR---IQPEEMIFELM-NHAREAG 200 (455)
T ss_pred HHHHh-CCCCCCCeEEEEeccCcCCHHHHHHHHHcC-CCEEEEcCCCCCHHHHHHhCC---CCCHHHHHHHH-HHHHhcC
Confidence 99875 111 125799999985432 33444543 356778999999999988743 36789999999 5677777
Q ss_pred Ce-EEEEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEec
Q 023640 167 QK-IFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPF 205 (279)
Q Consensus 167 ~~-v~i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~ 205 (279)
.. +.+.+++ +|+ ++.+++.+.++++.++++. +.+.++
T Consensus 201 ~~~v~~dli~GlPg--qt~e~~~~tl~~~~~l~~~~is~y~L 240 (455)
T TIGR00538 201 FTSINIDLIYGLPK--QTKESFAKTLEKVAELNPDRLAVFNY 240 (455)
T ss_pred CCcEEEeEEeeCCC--CCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 64 4454443 354 6889999999999999875 666665
No 94
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=99.32 E-value=9e-10 Score=104.00 Aligned_cols=182 Identities=12% Similarity=0.148 Sum_probs=116.7
Q ss_pred CCceEEEEeccCCcCccCccccCCCCCC--ccCC---CHHHHHHHHHHHhc-----cCCCceEEEecCCcccc-CHHHHH
Q 023640 18 GPRSTLCISSQVGCKMGCNFCATGTMGF--KSNL---SSGEIVEQLVHASR-----LSNIRNVVFMGMGEPLN-NYAALV 86 (279)
Q Consensus 18 ~~~~~l~i~~~~gCNl~C~yC~~~~~~~--~~~~---~~~ei~~~i~~~~~-----~~~~~~I~fsG~GEPll-~~~~i~ 86 (279)
....+||+-. ..||.+|.||....... .... -.+.+++++..... ...+..|.|.| |+|++ .++.+.
T Consensus 161 ~~~~sLYihI-PFC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGG-GTPt~L~~~~L~ 238 (488)
T PRK08207 161 KNEVSIYIGI-PFCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGG-GTPTSLTAEELE 238 (488)
T ss_pred CCceEEEEec-CCCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeC-CCccCCCHHHHH
Confidence 4556788854 67999999998654311 1111 12344455544321 12467899999 99996 567888
Q ss_pred HHHHHHhCCCCCCCCC-eEEEEc-CC--chhh-hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 023640 87 EAVRIMTGLPFQVSPK-RITVST-VG--IVHA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 161 (279)
Q Consensus 87 ~~i~~~~~~g~~~~~~-~v~i~T-NG--~~~~-~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~ 161 (279)
++++.+++.-.++... .+++.. +- .... +..+.+.+ ...+.|++++.+++..+.+. +..+++++.+++ +.
T Consensus 239 ~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~G-v~RISIGvQS~~d~vLk~ig---R~ht~e~v~~ai-~~ 313 (488)
T PRK08207 239 RLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYG-VDRISINPQTMNDETLKAIG---RHHTVEDIIEKF-HL 313 (488)
T ss_pred HHHHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcC-CCeEEEcCCcCCHHHHHHhC---CCCCHHHHHHHH-HH
Confidence 9998887641012122 455543 21 2222 33444443 34677888999999998883 347899999999 56
Q ss_pred HHhhCC-eEEEEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 162 QKNSQQ-KIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 162 ~~~~~~-~v~i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
+++.|. .+.+.+++ +| +++.+++.+.++++.++++. +.+.++.+.
T Consensus 314 ar~~Gf~~In~DLI~GLP--gEt~ed~~~tl~~l~~L~pd~isv~~L~i~ 361 (488)
T PRK08207 314 AREMGFDNINMDLIIGLP--GEGLEEVKHTLEEIEKLNPESLTVHTLAIK 361 (488)
T ss_pred HHhCCCCeEEEEEEeCCC--CCCHHHHHHHHHHHHhcCcCEEEEEeceEc
Confidence 777776 45554444 34 56889999999999999875 666555543
No 95
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=99.31 E-value=3.2e-10 Score=106.01 Aligned_cols=180 Identities=14% Similarity=0.297 Sum_probs=119.3
Q ss_pred ceEEEEeccCCcCccCccccCCC-CCCccCCCHHHHHHHHHHHhccCCCceEEEec-----CCccccCHHHHHHHHHHHh
Q 023640 20 RSTLCISSQVGCKMGCNFCATGT-MGFKSNLSSGEIVEQLVHASRLSNIRNVVFMG-----MGEPLNNYAALVEAVRIMT 93 (279)
Q Consensus 20 ~~~l~i~~~~gCNl~C~yC~~~~-~~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG-----~GEPll~~~~i~~~i~~~~ 93 (279)
+...++.++.|||++|.||..+. .+..+..+++++++++..+.+. |++.|.|+| +|..+-....+.++++.++
T Consensus 138 ~~~~~i~~srGC~~~CsfC~~~~~~g~~r~r~~e~Vv~Ei~~l~~~-g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~ 216 (429)
T TIGR00089 138 KTRAFLKIQEGCDKFCTYCIVPYARGRERSRPPEDILEEVKELVSK-GVKEIVLLGQNVGAYGKDLKGETNLADLLRELS 216 (429)
T ss_pred CeEEEEEHHhCcCCCCCcCceecccCCCCCCCHHHHHHHHHHHHHC-CCceEEEEeeccccccCCCCCCcCHHHHHHHHh
Confidence 44567777899999999998753 2245678899999999987753 788899887 1333221134778888887
Q ss_pred CC-CCCCCCCeEEEEc-CC--chhhh-HHHhccC-CCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCC
Q 023640 94 GL-PFQVSPKRITVST-VG--IVHAI-NKFHSDL-PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 167 (279)
Q Consensus 94 ~~-g~~~~~~~v~i~T-NG--~~~~~-~~l~~~~-~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~ 167 (279)
+. |. ..+.+.+ +. ...++ +.+.+.. .-..+.+.+++.+++..+.+. +..+.+.+.+.+ +.+++.+.
T Consensus 217 ~~~g~----~~i~~~~~~p~~i~~ell~~m~~~~~~~~~l~igiES~s~~vLk~m~---R~~~~~~~~~~i-~~lr~~~~ 288 (429)
T TIGR00089 217 KIDGI----ERIRFGSSHPDDVTDDLIELIAENPKVCKHLHLPVQSGSDRILKRMN---RKYTREEYLDIV-EKIRAKIP 288 (429)
T ss_pred cCCCC----CEEEECCCChhhcCHHHHHHHHhCCCccCceeeccccCChHHHHhCC---CCCCHHHHHHHH-HHHHHHCC
Confidence 65 42 2455543 22 22222 2233331 123567889999999888764 346788888888 44556663
Q ss_pred eEEEEEEEeCC-CCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 168 KIFIEYIMLDG-VNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 168 ~v~i~~vv~~g-~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
.+.+.+.++-| -+++++++.+.++++.++++. +++.+|.|.
T Consensus 289 ~i~i~~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~ 331 (429)
T TIGR00089 289 DAAITTDIIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPR 331 (429)
T ss_pred CCEEEeeEEEECCCCCHHHHHHHHHHHHhcCCCEeeccccCCC
Confidence 33333333323 257899999999999999875 788888886
No 96
>PLN02428 lipoic acid synthase
Probab=99.30 E-value=6.1e-10 Score=100.05 Aligned_cols=198 Identities=15% Similarity=0.141 Sum_probs=130.6
Q ss_pred eccCCcCccCccccCCCCCCccCCCHHHHHHHHHHHhccCCCceEEEecCCc----cccCHHHHHHHHHHHhCCCCCCCC
Q 023640 26 SSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE----PLNNYAALVEAVRIMTGLPFQVSP 101 (279)
Q Consensus 26 ~~~~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GE----Pll~~~~i~~~i~~~~~~g~~~~~ 101 (279)
-.+.+|+.+|.||..+........+++++.+.+..+.. .|++.|.|+| |+ |-...+.+.++++.+++.. +.
T Consensus 107 ilg~gCtr~CrFCav~~~~~p~~~d~~Ep~~vA~~v~~-~Glk~vvltS-g~rddl~D~ga~~~~elir~Ir~~~---P~ 181 (349)
T PLN02428 107 ILGDTCTRGCRFCAVKTSRTPPPPDPDEPENVAEAIAS-WGVDYVVLTS-VDRDDLPDGGSGHFAETVRRLKQLK---PE 181 (349)
T ss_pred EecCCCCCCCCCCcCCCCCCCCCCChhhHHHHHHHHHH-cCCCEEEEEE-cCCCCCCcccHHHHHHHHHHHHHhC---CC
Confidence 35799999999998864322334556777776666554 4788899999 84 3344567889999999863 23
Q ss_pred CeEEEEcCCchhh---hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhh--CCeEEEEEEEe
Q 023640 102 KRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS--QQKIFIEYIML 176 (279)
Q Consensus 102 ~~v~i~TNG~~~~---~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~--~~~v~i~~vv~ 176 (279)
..+.+.|-++..+ +..+++.+. ..+...+++ .+.+++.+.+ +..++++.++.++ .+++. |.. +...++
T Consensus 182 i~Ie~L~pdf~~d~elL~~L~eAG~-d~i~hnlET-v~rL~~~Ir~--~~~sye~~Le~L~-~ak~~~pGi~--tkSg~M 254 (349)
T PLN02428 182 ILVEALVPDFRGDLGAVETVATSGL-DVFAHNIET-VERLQRIVRD--PRAGYKQSLDVLK-HAKESKPGLL--TKTSIM 254 (349)
T ss_pred cEEEEeCccccCCHHHHHHHHHcCC-CEEccCccC-cHHHHHHhcC--CCCCHHHHHHHHH-HHHHhCCCCe--EEEeEE
Confidence 5677766554321 445555542 234456665 5667777752 2367899999995 45555 554 444444
Q ss_pred CCCCCcHHHHHHHHHHHhhCCcE-EEEEec-CCCCCCCC-cCCCCHHHHHHHHHHHHhcCCeE
Q 023640 177 DGVNDEEQHAHQLGKLLETFQVV-VNLIPF-NPIGSVSQ-FRTSSDDKVSSFQKILRGSYNIR 236 (279)
Q Consensus 177 ~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~-~p~~~~~~-~~~~~~e~l~~~~~~l~~~~gi~ 236 (279)
=|+.++++++.++++++.++++. +.+-+| .|....-. .+-.++++++.+.++.. +.|..
T Consensus 255 vGLGET~Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~-~~gf~ 316 (349)
T PLN02428 255 LGLGETDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGE-EMGFR 316 (349)
T ss_pred EecCCCHHHHHHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHH-HcCCc
Confidence 47788999999999999999986 333244 34311001 12258999999999998 77864
No 97
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.29 E-value=7.5e-10 Score=103.80 Aligned_cols=179 Identities=15% Similarity=0.240 Sum_probs=120.1
Q ss_pred eEEEEeccCCcCccCccccCCCC-CCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCH---HHHHHHHHHHhCC-
Q 023640 21 STLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNY---AALVEAVRIMTGL- 95 (279)
Q Consensus 21 ~~l~i~~~~gCNl~C~yC~~~~~-~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~---~~i~~~i~~~~~~- 95 (279)
...|+..+.|||++|.||..+.. +..+..+++++++++..+... |++.|.|+| .+-+.+. ..+.++++.+.+.
T Consensus 154 ~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~-G~kei~l~~-~~~~~y~~~~~~l~~Ll~~l~~~~ 231 (449)
T PRK14332 154 IQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLQEK-GIRQVTLLG-QNVNSYKEQSTDFAGLIQMLLDET 231 (449)
T ss_pred ceEEEEecCCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHC-CCeEEEEec-ccCCcccCCcccHHHHHHHHhcCC
Confidence 35677778999999999988532 234678899999999987764 889999998 6666542 1366777666543
Q ss_pred CCCCCCCeEEEEcC---CchhhhHH-HhccCC-CceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEE
Q 023640 96 PFQVSPKRITVSTV---GIVHAINK-FHSDLP-GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 170 (279)
Q Consensus 96 g~~~~~~~v~i~TN---G~~~~~~~-l~~~~~-~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~ 170 (279)
+. ..+.+.+- .....+.+ +++... -..+.+.+.+.+++..+.+. +..+.+.+.++++ .+++....+.
T Consensus 232 ~~----~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m~---R~~t~~~~~~~i~-~lr~~~p~i~ 303 (449)
T PRK14332 232 TI----ERIRFTSPHPKDFPDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMK---RSYSKEEFLDVVK-EIRNIVPDVG 303 (449)
T ss_pred Cc----ceEEEECCCcccCCHHHHHHHHhCCCccceEEECCCcCCHHHHHhhC---CCCCHHHHHHHHH-HHHHhCCCCE
Confidence 21 34555442 22222222 333221 12567888999999988874 3467888889884 4455433344
Q ss_pred EEEEEeCC-CCCcHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 023640 171 IEYIMLDG-VNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG 209 (279)
Q Consensus 171 i~~vv~~g-~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~ 209 (279)
+.+.++-| -+++++++++.++++.++++. +++.+|.|..
T Consensus 304 i~td~IvGfPgET~edf~~tl~~v~~l~~~~~~~f~ys~~~ 344 (449)
T PRK14332 304 ITTDIIVGFPNETEEEFEDTLAVVREVQFDMAFMFKYSERE 344 (449)
T ss_pred EEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEEEecCCC
Confidence 44444433 256889999999999999875 7888888763
No 98
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=99.29 E-value=8.7e-10 Score=101.39 Aligned_cols=177 Identities=10% Similarity=0.103 Sum_probs=118.3
Q ss_pred EEEEeccCCcCccCccccCCCCCC-c--cCCCHHHHHHHHHHHhcc--CCCceEEEecCCcccc-CHHHHHHHHHHHhCC
Q 023640 22 TLCISSQVGCKMGCNFCATGTMGF-K--SNLSSGEIVEQLVHASRL--SNIRNVVFMGMGEPLN-NYAALVEAVRIMTGL 95 (279)
Q Consensus 22 ~l~i~~~~gCNl~C~yC~~~~~~~-~--~~~~~~ei~~~i~~~~~~--~~~~~I~fsG~GEPll-~~~~i~~~i~~~~~~ 95 (279)
++|+-. .-|+.+|.||....... . ....++.+++++...... .++..|.|.| |+|++ .++.+.++++.+++.
T Consensus 3 ~lYihi-PfC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gG-Gtpt~l~~~~l~~ll~~i~~~ 80 (377)
T PRK08599 3 SAYIHI-PFCEHICYYCDFNKVFIKNQPVDEYLDALIKEMNTYAIRPFDKLKTIYIGG-GTPTALSAEQLERLLTAIHRN 80 (377)
T ss_pred eEEEEe-CCcCCCCCCCCCeeeccCccCHHHHHHHHHHHHHHhhhcCCCceeEEEeCC-CCcccCCHHHHHHHHHHHHHh
Confidence 344433 56999999997643211 1 112355666666443322 2577899999 99995 578899999998875
Q ss_pred CCCCC-CCeEEEEcCCchhh---hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCe-EE
Q 023640 96 PFQVS-PKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IF 170 (279)
Q Consensus 96 g~~~~-~~~v~i~TNG~~~~---~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~-v~ 170 (279)
+++. ...+++.+|....+ +..+.+.+ ...+.|++++.+++..+.+.+ ..+.+++.+++ +.+++.|.. +.
T Consensus 81 -~~~~~~~eit~e~~p~~l~~e~l~~l~~~G-~~rvsiGvqS~~~~~l~~l~r---~~~~~~~~~~i-~~l~~~g~~~v~ 154 (377)
T PRK08599 81 -LPLSGLEEFTFEANPGDLTKEKLQVLKDSG-VNRISLGVQTFNDELLKKIGR---THNEEDVYEAI-ANAKKAGFDNIS 154 (377)
T ss_pred -CCCCCCCEEEEEeCCCCCCHHHHHHHHHcC-CCEEEEecccCCHHHHHHcCC---CCCHHHHHHHH-HHHHHcCCCcEE
Confidence 2221 14788899974332 33444443 346789999999999988743 46789999999 566777765 45
Q ss_pred EEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 171 IEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 171 i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
+.+++ +| +++.+++.+.++++.++++. +.+.++.|.
T Consensus 155 ~dli~GlP--gqt~~~~~~~l~~~~~l~~~~i~~y~l~~~ 192 (377)
T PRK08599 155 IDLIYALP--GQTIEDFKESLAKALALDIPHYSAYSLILE 192 (377)
T ss_pred EeeecCCC--CCCHHHHHHHHHHHHccCCCEEeeeceeec
Confidence 54433 34 56889999999999998864 555554443
No 99
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.28 E-value=5.3e-10 Score=104.70 Aligned_cols=177 Identities=13% Similarity=0.241 Sum_probs=121.2
Q ss_pred ceEEEEeccCCcCccCccccCCCC-CCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCH-----HHHHHHHHHHh
Q 023640 20 RSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNY-----AALVEAVRIMT 93 (279)
Q Consensus 20 ~~~l~i~~~~gCNl~C~yC~~~~~-~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~-----~~i~~~i~~~~ 93 (279)
+...++.++.|||++|.||..+.. +..+..+++++++++..+.. .+++.|.|+| .+.+.+. ..+.++++.+.
T Consensus 145 ~~~a~v~i~rGC~~~CsFC~~p~~~g~~rsr~~e~V~~Ei~~l~~-~g~~eI~l~d-~~~~~y~~~~~~~~~~~Ll~~l~ 222 (437)
T PRK14331 145 KYCAYVTVMRGCDKKCTYCVVPKTRGKERSRRLGSILDEVQWLVD-DGVKEIHLIG-QNVTAYGKDIGDVPFSELLYAVA 222 (437)
T ss_pred CcEEEEEeccCcCCCCccCCcccCCCCcccCCHHHHHHHHHHHHH-CCCeEEEEee-eccccccCCCCCCCHHHHHHHHh
Confidence 456677778999999999987532 23467789999999998776 3789999999 7776531 23667887776
Q ss_pred CC-CCCCCCCeEEEEcCC---chhh-hHHHhccC-CCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhh--
Q 023640 94 GL-PFQVSPKRITVSTVG---IVHA-INKFHSDL-PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-- 165 (279)
Q Consensus 94 ~~-g~~~~~~~v~i~TNG---~~~~-~~~l~~~~-~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~-- 165 (279)
+. |. ..+.+.+.- ...+ ++.+++.. ....+.+.+++.+++..+.+. +..+.+.+.++++ .+++.
T Consensus 223 ~~~g~----~~i~~~~~~p~~l~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~m~---R~~t~~~~~~~v~-~lr~~~~ 294 (437)
T PRK14331 223 EIDGV----ERIRFTTGHPRDLDEDIIKAMADIPQVCEHLHLPFQAGSDRILKLMD---RGYTKEEYLEKIE-LLKEYIP 294 (437)
T ss_pred cCCCc----cEEEEeccCcccCCHHHHHHHHcCCccCCceecccccCChHHHHHcC---CCCCHHHHHHHHH-HHHHhCC
Confidence 65 31 245555422 1122 22333321 123467889999999888764 3478889999984 45555
Q ss_pred CCeEEEEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 166 QQKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 166 ~~~v~i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
+..+...+++ .|| ++++++++.++++.++++. +++.+|.|.
T Consensus 295 gi~i~~d~IvG~Pg--ET~ed~~~tl~~l~~l~~~~i~~f~~sp~ 337 (437)
T PRK14331 295 DITFSTDIIVGFPT--ETEEDFEETLDVLKKVEFEQVFSFKYSPR 337 (437)
T ss_pred CCEEecCEEEECCC--CCHHHHHHHHHHHHhcCcceeeeeEecCC
Confidence 5555544444 354 6889999999999999875 676778776
No 100
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=99.28 E-value=3.9e-10 Score=105.01 Aligned_cols=180 Identities=14% Similarity=0.226 Sum_probs=116.8
Q ss_pred CceEEEEeccCCcCccCccccCCCC-CCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccC----HHHHHHHHHHHh
Q 023640 19 PRSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN----YAALVEAVRIMT 93 (279)
Q Consensus 19 ~~~~l~i~~~~gCNl~C~yC~~~~~-~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~----~~~i~~~i~~~~ 93 (279)
.+...++.++.|||++|.||..+.. +..+..+++++++++....+. |++.|.|+| .+-... ...+.++++.+.
T Consensus 131 ~~~~~~i~isrGC~~~CsfC~ip~~~G~~rsr~~e~Vl~Ei~~l~~~-G~~ei~l~g-~d~~~yg~d~~~~l~~Ll~~l~ 208 (420)
T TIGR01578 131 NPLIEIIPINQGCLGNCSYCITKHARGKLASYPPEKIVEKARQLVAE-GCKEIWITS-QDTGAYGRDIGSRLPELLRLIT 208 (420)
T ss_pred CCcEEEEEEccCCCCCCCCCccccCCCCcccCCHHHHHHHHHHHHHC-CCeEEEEEe-eccccccCCCCcCHHHHHHHHH
Confidence 3456777788999999999987542 235678999999999987764 789999998 443321 123566777666
Q ss_pred CCCCCCCCCeEEEEc--CCch-hhhHHHhccC--CC--ceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhh-
Q 023640 94 GLPFQVSPKRITVST--VGIV-HAINKFHSDL--PG--LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS- 165 (279)
Q Consensus 94 ~~g~~~~~~~v~i~T--NG~~-~~~~~l~~~~--~~--~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~- 165 (279)
+... ...+.+.+ .... ...+++.+.. .. ..+.+.+.+.+++..+.+.+ ..+.+.+.+.++ .+++.
T Consensus 209 ~i~~---~~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgsd~iL~~m~R---~~~~~~~~~~i~-~i~~~~ 281 (420)
T TIGR01578 209 EIPG---EFRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGSDSVLKEMKR---EYTVSDFEDIVD-KFRERF 281 (420)
T ss_pred hCCC---CcEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCCHHHHHhcCC---CCCHHHHHHHHH-HHHHhC
Confidence 5421 12344433 1111 1112333321 11 24668899999998887743 467888888884 44555
Q ss_pred -CCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 166 -QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 166 -~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
+..+...+++ .--+++++++.+.++++.++++. +++.+|.|.
T Consensus 282 ~~i~i~~~~Iv-G~PgET~ed~~~t~~~~~~~~~~~i~~~~~~p~ 325 (420)
T TIGR01578 282 PDLTLSTDIIV-GFPTETDDDFEETMELLRKYRPEKINITKFSPR 325 (420)
T ss_pred CCCEEEeeEEE-eCCCCCHHHHHHHHHHHHHhCCCEEEEEEeeCC
Confidence 4444444333 11257889999999999999875 888888886
No 101
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.27 E-value=2.8e-10 Score=106.54 Aligned_cols=179 Identities=11% Similarity=0.217 Sum_probs=121.5
Q ss_pred CceEEEEeccCCcCccCccccCCCC-CCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCH-----HHHHHHHHHH
Q 023640 19 PRSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNY-----AALVEAVRIM 92 (279)
Q Consensus 19 ~~~~l~i~~~~gCNl~C~yC~~~~~-~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~-----~~i~~~i~~~ 92 (279)
.+...|+.++.|||++|.||..+.. +..+..+++++++++..+... |++.|.|+| ...+... ..+.++++.+
T Consensus 147 ~~~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~-G~~ei~l~~-~~~~~y~d~~~~~~l~~Ll~~l 224 (445)
T PRK14340 147 GSISAFVPVMRGCNNMCAFCVVPFTRGRERSHPFASVLDEVRALAEA-GYREITLLG-QNVNSYSDPEAGADFAGLLDAV 224 (445)
T ss_pred CCcEEEEEeccCCCCCCCCCCcccccCCCcCCCHHHHHHHHHHHHHC-CCeEEEEee-cccchhhccCCCchHHHHHHHH
Confidence 3446777888999999999987532 345678899999999987764 789999988 6655321 2366777777
Q ss_pred hCCCCCCCCCeEEEEcC---Cchhh-hHHHhccC-CCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhh--
Q 023640 93 TGLPFQVSPKRITVSTV---GIVHA-INKFHSDL-PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-- 165 (279)
Q Consensus 93 ~~~g~~~~~~~v~i~TN---G~~~~-~~~l~~~~-~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~-- 165 (279)
.+.. ....+.+.+. ....+ ++.+++.. .-..+.+.+.+.+++..+.+. +..+.+.+.++++ .+++.
T Consensus 225 ~~~~---~~~rir~~~~~p~~l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~---R~~t~~~~~~~v~-~lr~~~p 297 (445)
T PRK14340 225 SRAA---PEMRIRFTTSHPKDISESLVRTIAARPNICNHIHLPVQSGSSRMLRRMN---RGHTIEEYLEKIA-LIRSAIP 297 (445)
T ss_pred hhcC---CCcEEEEccCChhhcCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcC---CCCCHHHHHHHHH-HHHHhCC
Confidence 6531 1135555442 12222 22233321 123567889999999888763 3468889999994 45555
Q ss_pred CCeEEEEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 166 QQKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 166 ~~~v~i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
|+.+...+++ .|| ++++++++.++++.++++. +++.+|.|.
T Consensus 298 gi~i~td~IvGfPg--ET~edf~~tl~~~~~~~~~~~~~f~~sp~ 340 (445)
T PRK14340 298 GVTLSTDLIAGFCG--ETEEDHRATLSLMEEVRFDSAFMFYYSVR 340 (445)
T ss_pred CCEEeccEEEECCC--CCHHHHHHHHHHHHhcCCCEEeeEEecCC
Confidence 6655554444 354 6889999999999999875 777788876
No 102
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.27 E-value=9e-10 Score=102.49 Aligned_cols=181 Identities=17% Similarity=0.252 Sum_probs=122.1
Q ss_pred CCCCceEEEEeccCCcCccCccccCCCC-CCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccC------HHHHHHH
Q 023640 16 PGGPRSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN------YAALVEA 88 (279)
Q Consensus 16 p~~~~~~l~i~~~~gCNl~C~yC~~~~~-~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~------~~~i~~~ 88 (279)
|...+...++..+.|||++|.||..+.. +..+..+++++++++..+.+. |++.|.|+| ..-+.+ .+.+.++
T Consensus 119 ~~~~~~~a~i~i~rGC~~~CsFC~ip~~rG~~rsrs~e~Iv~Ei~~l~~~-G~~ei~l~~-~~~~~yg~d~~~~~~l~~L 196 (418)
T PRK14336 119 PLKPPVSANVTIMQGCDNFCTYCVVPYRRGREKSRSIAEIGCEVAELVRR-GSREVVLLG-QNVDSYGHDLPEKPCLADL 196 (418)
T ss_pred CCCCCeEEEEEeccCCCCCCccCCccccCCCCccCCHHHHHHHHHHHHHC-CCeEEEEEe-cCccccccCCCCcccHHHH
Confidence 3334566777778999999999987532 344678999999999987764 788999998 765432 1247788
Q ss_pred HHHHhCC-CCCCCCCeEEEEcCC---chhh-hHHHhccC-CCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHH
Q 023640 89 VRIMTGL-PFQVSPKRITVSTVG---IVHA-INKFHSDL-PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 162 (279)
Q Consensus 89 i~~~~~~-g~~~~~~~v~i~TNG---~~~~-~~~l~~~~-~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~ 162 (279)
++.+.+. |. ..+.+.+.- ...+ ++.+++.. ....+.+.+.+.+++..+.+.+ ..+.+.+.++++ .+
T Consensus 197 l~~l~~~~~~----~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~M~R---~~~~~~~~~~i~-~l 268 (418)
T PRK14336 197 LSALHDIPGL----LRIRFLTSHPKDISQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAMRR---GYTNQQYRELVE-RL 268 (418)
T ss_pred HHHHHhcCCc----cEEEEeccChhhcCHHHHHHHHhcCccCCceecCCCcCCHHHHHHhCC---CCCHHHHHHHHH-HH
Confidence 8877764 31 345554321 1122 22233321 1234667889999998887743 467888888884 45
Q ss_pred Hhh--CCeEEEEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 163 KNS--QQKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 163 ~~~--~~~v~i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
++. +..+...+++ .|| ++.+++++.++++.+++.. +++.+|.|.
T Consensus 269 r~~~pgi~i~~d~IvGfPG--ET~edf~~tl~fi~~~~~~~~~v~~ysp~ 316 (418)
T PRK14336 269 KTAMPDISLQTDLIVGFPS--ETEEQFNQSYKLMADIGYDAIHVAAYSPR 316 (418)
T ss_pred HhhCCCCEEEEEEEEECCC--CCHHHHHHHHHHHHhcCCCEEEeeecCCC
Confidence 555 5555444444 354 6889999999999998865 777788876
No 103
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=99.26 E-value=1.9e-09 Score=99.01 Aligned_cols=170 Identities=12% Similarity=0.136 Sum_probs=114.3
Q ss_pred CCcCccCccccCCCCCCcc---CCC----HHHHHHHHHHHhcc-----CCCceEEEecCCcccc-CHHHHHHHHHHHhCC
Q 023640 29 VGCKMGCNFCATGTMGFKS---NLS----SGEIVEQLVHASRL-----SNIRNVVFMGMGEPLN-NYAALVEAVRIMTGL 95 (279)
Q Consensus 29 ~gCNl~C~yC~~~~~~~~~---~~~----~~ei~~~i~~~~~~-----~~~~~I~fsG~GEPll-~~~~i~~~i~~~~~~ 95 (279)
.-|+.+|.||......... ... .+.+.+++...... ..++.|.|.| |.|++ .++.+.++++.+++.
T Consensus 10 PFC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GG-GTPs~l~~~~l~~ll~~i~~~ 88 (375)
T PRK05628 10 PFCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGG-GTPSLLGAEGLARVLDAVRDT 88 (375)
T ss_pred CCcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCC-CccccCCHHHHHHHHHHHHHh
Confidence 6799999999763321111 123 33444444433221 2367899999 99995 467888999888874
Q ss_pred -CCCCCCCeEEEEcCCchhh---hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCe-EE
Q 023640 96 -PFQVSPKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IF 170 (279)
Q Consensus 96 -g~~~~~~~v~i~TNG~~~~---~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~-v~ 170 (279)
++. +...+++.+|....+ +..+.+.+ ...+.|.+++.+++..+.+. +..+.+.+.+++ +.+++.|.. +.
T Consensus 89 ~~~~-~~~e~t~e~~p~~i~~e~l~~l~~~G-~~rvslGvQS~~~~~L~~l~---R~~s~~~~~~a~-~~l~~~g~~~v~ 162 (375)
T PRK05628 89 FGLA-PGAEVTTEANPESTSPEFFAALRAAG-FTRVSLGMQSAAPHVLAVLD---RTHTPGRAVAAA-REARAAGFEHVN 162 (375)
T ss_pred CCCC-CCCEEEEEeCCCCCCHHHHHHHHHcC-CCEEEEecccCCHHHHHHcC---CCCCHHHHHHHH-HHHHHcCCCcEE
Confidence 321 224688888874332 33444443 34678899999999988774 346889999999 566777776 76
Q ss_pred EEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCC
Q 023640 171 IEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNP 207 (279)
Q Consensus 171 i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p 207 (279)
+.+++ +|+ ++.+++.+.++++.++++. +.+.++.+
T Consensus 163 ~dli~GlPg--qt~~~~~~tl~~~~~l~~~~i~~y~l~~ 199 (375)
T PRK05628 163 LDLIYGTPG--ESDDDWRASLDAALEAGVDHVSAYALIV 199 (375)
T ss_pred EEEeccCCC--CCHHHHHHHHHHHHhcCCCEEEeeeeec
Confidence 66665 465 5788999999999998874 66555544
No 104
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.25 E-value=2.1e-09 Score=101.90 Aligned_cols=178 Identities=11% Similarity=0.219 Sum_probs=119.1
Q ss_pred CceEEEEeccCCcCccCccccCCCC-CCccCCCHHHHHHHHHHHhccCCCceEEEecCCcccc------C-HHHHHHHHH
Q 023640 19 PRSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLN------N-YAALVEAVR 90 (279)
Q Consensus 19 ~~~~l~i~~~~gCNl~C~yC~~~~~-~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll------~-~~~i~~~i~ 90 (279)
.+...|+..+.|||++|.||..+.. +..+..+++++++++..+... |++.|.|+| ..-.. . ...+.++++
T Consensus 210 ~~~~a~v~I~~GC~~~CsFC~vp~~rG~~Rsr~~e~Ii~Ei~~l~~~-G~keI~L~g-~n~~~yg~d~~~~~~~l~~Ll~ 287 (509)
T PRK14327 210 GNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLARQ-GYKEITLLG-QNVNAYGKDFEDIEYGLGDLMD 287 (509)
T ss_pred CCeEEEEEecCCCCCCCcCCcccccCCCCeeCCHHHHHHHHHHHHHC-CCcEEEEEe-eccccCcccccccchHHHHHHH
Confidence 4567888889999999999987532 344678899999999987753 788888887 43221 1 124678888
Q ss_pred HHhCCCCCCCCCeEEEEcC-C--chhh-hHHHhccCC-CceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhh
Q 023640 91 IMTGLPFQVSPKRITVSTV-G--IVHA-INKFHSDLP-GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 165 (279)
Q Consensus 91 ~~~~~g~~~~~~~v~i~TN-G--~~~~-~~~l~~~~~-~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~ 165 (279)
.+.+.++ ..+.+.|. - +..+ +..+++... ...+.+.+.+.+++..+.+. +..+.+.+++.++ .+++.
T Consensus 288 ~I~~~~i----~~ir~~s~~P~~i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~---R~~t~e~~~~~v~-~lr~~ 359 (509)
T PRK14327 288 EIRKIDI----PRVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMA---RKYTRESYLELVR-KIKEA 359 (509)
T ss_pred HHHhCCC----ceEEEeecCcccCCHHHHHHHHhcCCccceEEeccCCCCHHHHHhcC---CCCCHHHHHHHHH-HHHHh
Confidence 8876542 24555542 1 1112 222333221 12577889999999888764 3477888988884 44554
Q ss_pred CCeEEEE--EEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 166 QQKIFIE--YIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 166 ~~~v~i~--~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
...+.+. +++ .|| ++++++++.++++.++++. +++.+|.|.
T Consensus 360 ~p~i~i~tdiIvGfPg--ET~edf~~Tl~~v~~l~~d~~~~f~yspr 404 (509)
T PRK14327 360 IPNVALTTDIIVGFPN--ETDEQFEETLSLYREVGFDHAYTFIYSPR 404 (509)
T ss_pred CCCcEEeeeEEEeCCC--CCHHHHHHHHHHHHHcCCCeEEEeeeeCC
Confidence 3334443 333 354 6889999999999999875 777777776
No 105
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.24 E-value=1.8e-09 Score=101.17 Aligned_cols=178 Identities=11% Similarity=0.208 Sum_probs=117.4
Q ss_pred CceEEEEeccCCcCccCccccCCCC-CCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCH------HHHHHHHHH
Q 023640 19 PRSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNY------AALVEAVRI 91 (279)
Q Consensus 19 ~~~~l~i~~~~gCNl~C~yC~~~~~-~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~------~~i~~~i~~ 91 (279)
.+...|+.++.|||++|.||..+.. +..+..+++++++++..+... |++.|.|+| ..-+.+. ..+.++++.
T Consensus 145 ~~~~~~i~i~rGC~~~CsfC~~p~~~g~~Rsr~~e~Iv~Ei~~l~~~-G~~ei~l~~-~~~~~yg~d~~~~~~l~~Ll~~ 222 (439)
T PRK14328 145 SKVKAFVTIMYGCNNFCTYCIVPYVRGRERSRKPEDIIAEIKELVSE-GYKEVTLLG-QNVNSYGKDLEEKIDFADLLRR 222 (439)
T ss_pred CCcEEEEEHHhCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHC-CCcEEEEec-cccCcCCcCCCCCcCHHHHHHH
Confidence 3455688888999999999987532 334678899999999987753 789999998 6543310 236677777
Q ss_pred HhCC-CCCCCCCeEEEEc-CC--chhh-hHHHhccCC-CceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhh
Q 023640 92 MTGL-PFQVSPKRITVST-VG--IVHA-INKFHSDLP-GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 165 (279)
Q Consensus 92 ~~~~-g~~~~~~~v~i~T-NG--~~~~-~~~l~~~~~-~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~ 165 (279)
+.+. +. ..+.+.+ +. ...+ ++.+.+... ...+.+.+.+.+++..+.+. +..+.+.+.++++. +++.
T Consensus 223 l~~~~~~----~~ir~~~~~P~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~---R~~~~~~~~~~i~~-lr~~ 294 (439)
T PRK14328 223 VNEIDGL----ERIRFMTSHPKDLSDDLIEAIADCDKVCEHIHLPVQSGSNRILKKMN---RHYTREYYLELVEK-IKSN 294 (439)
T ss_pred HHhcCCC----cEEEEecCChhhcCHHHHHHHHhCCCcCceeeeCCCcCCHHHHHhCC---CCCCHHHHHHHHHH-HHHh
Confidence 7654 31 2455433 22 1122 222333221 22466888999999888763 34678888888854 4444
Q ss_pred --CCeEEEEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 166 --QQKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 166 --~~~v~i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
+..+...+++ .| +++++++++.++++.+++.. +++.+|.|.
T Consensus 295 ~~~i~i~~d~IvG~P--gET~ed~~~tl~~i~~l~~~~~~~~~~sp~ 339 (439)
T PRK14328 295 IPDVAITTDIIVGFP--GETEEDFEETLDLVKEVRYDSAFTFIYSKR 339 (439)
T ss_pred CCCCEEEEEEEEECC--CCCHHHHHHHHHHHHhcCCCcccceEecCC
Confidence 3334433333 34 56889999999999998765 777777776
No 106
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.23 E-value=2e-09 Score=101.01 Aligned_cols=178 Identities=13% Similarity=0.247 Sum_probs=117.6
Q ss_pred CceEEEEeccCCcCccCccccCCCC-CCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccC--------HHHHHHHH
Q 023640 19 PRSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN--------YAALVEAV 89 (279)
Q Consensus 19 ~~~~l~i~~~~gCNl~C~yC~~~~~-~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~--------~~~i~~~i 89 (279)
.+...++.++.|||++|.||..+.. +..+..+++++++++..+... |++.|.|+| -.-+.. ...+.+++
T Consensus 145 ~~~~~~i~isrGCp~~CsFC~~p~~~G~~~sr~~e~Iv~Ei~~l~~~-g~~ei~l~d-~~~~~y~~~~~~~~~~~l~~Ll 222 (444)
T PRK14325 145 EGPSAFVSIMEGCDKYCTFCVVPYTRGEEVSRPVDDVLAEVAQLAEQ-GVREITLLG-QNVNAYRGEGPDGEIADFAELL 222 (444)
T ss_pred CCceEEEEhhhCCCCCCCccccCcccCCcccCCHHHHHHHHHHHHHC-CCcEEEEEe-eccccccCCCCCCCcchHHHHH
Confidence 3456677778999999999987532 233467899999999987753 788888887 433221 12577888
Q ss_pred HHHhCC-CCCCCCCeEEEEc-CC--chhh-hHHHhccCC-CceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHH
Q 023640 90 RIMTGL-PFQVSPKRITVST-VG--IVHA-INKFHSDLP-GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 163 (279)
Q Consensus 90 ~~~~~~-g~~~~~~~v~i~T-NG--~~~~-~~~l~~~~~-~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~ 163 (279)
+.+.+. |. ..+.+.+ +. .... +..+++... ...+.+.+++.+++..+.+. +..+.+.+.++++ .++
T Consensus 223 ~~l~~~~~~----~~ir~~~~~p~~~~~ell~~l~~~~~~~~~l~igiqSgs~~vLk~m~---R~~~~~~~~~~i~-~lr 294 (444)
T PRK14325 223 RLVAAIDGI----ERIRYTTSHPRDFTDDLIEAYADLPKLVPFLHLPVQSGSDRILKAMN---RGHTALEYKSIIR-KLR 294 (444)
T ss_pred HHHHhcCCc----cEEEEccCCcccCCHHHHHHHHcCCcccCceeccCCcCCHHHHHhCC---CCCCHHHHHHHHH-HHH
Confidence 877765 31 2355543 22 2122 222333221 23567888999999888764 3468889999994 455
Q ss_pred hh--CCeEEEEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 164 NS--QQKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 164 ~~--~~~v~i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
+. ++.+...+++ .| +++++++++.++++.+++.. +++.+|.|.
T Consensus 295 ~~~~gi~v~~~~IvG~P--gET~ed~~~tl~~i~~~~~~~~~~~~~sp~ 341 (444)
T PRK14325 295 AARPDIAISSDFIVGFP--GETDEDFEATMKLIEDVGFDQSFSFIYSPR 341 (444)
T ss_pred HHCCCCEEEeeEEEECC--CCCHHHHHHHHHHHHhcCCCeeeeeeccCC
Confidence 55 4455544444 34 46889999999999998865 666677776
No 107
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=99.23 E-value=2e-09 Score=100.61 Aligned_cols=181 Identities=13% Similarity=0.112 Sum_probs=118.4
Q ss_pred ceEEEEeccCCcCccCccccCCCCC-CccCC---CHHHHHHHHHHHhc---cCCCceEEEecCCccccC-HHHHHHHHHH
Q 023640 20 RSTLCISSQVGCKMGCNFCATGTMG-FKSNL---SSGEIVEQLVHASR---LSNIRNVVFMGMGEPLNN-YAALVEAVRI 91 (279)
Q Consensus 20 ~~~l~i~~~~gCNl~C~yC~~~~~~-~~~~~---~~~ei~~~i~~~~~---~~~~~~I~fsG~GEPll~-~~~i~~~i~~ 91 (279)
...+++-. .-|+.+|.||...... ..... -.+.+++++..... ...+..|.|.| |+|++. .+.+.++++.
T Consensus 39 ~~~lYvHI-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GG-GTPs~l~~~~l~~Ll~~ 116 (430)
T PRK08208 39 ALSLYIHI-PFCEMRCGFCNLFTRTGADAEFIDSYLDALIRQAEQVAEALAPARFASFAVGG-GTPTLLNAAELEKLFDS 116 (430)
T ss_pred ceEEEEEe-CCccCcCCCCCCccccCCccchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcC-CccccCCHHHHHHHHHH
Confidence 45677754 6799999999764321 11111 23445555554331 12367899999 999874 6778888888
Q ss_pred HhCC-CCCCCCCeEEEEcCCchhh---hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCC
Q 023640 92 MTGL-PFQVSPKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 167 (279)
Q Consensus 92 ~~~~-g~~~~~~~v~i~TNG~~~~---~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~ 167 (279)
+++. ++......+++.||....+ +..+.+.+ ...+.|.+++.+++..+.+.+ ..+.+++.+++ +.+++.|.
T Consensus 117 i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G-~~rvslGvQS~~~~~L~~l~R---~~~~~~~~~ai-~~l~~~g~ 191 (430)
T PRK08208 117 VERVLGVDLGNIPKSVETSPATTTAEKLALLAARG-VNRLSIGVQSFHDSELHALHR---PQKRADVHQAL-EWIRAAGF 191 (430)
T ss_pred HHHhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcC-CCEEEEecccCCHHHHHHhCC---CCCHHHHHHHH-HHHHHcCC
Confidence 8764 2111124688999984432 33344433 346778999998888777643 45789999999 66777776
Q ss_pred e-EEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 168 K-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 168 ~-v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
. +.+.+++ .--+++.+++.+.++++.++++. +.+.++.+.
T Consensus 192 ~~i~~dlI~-GlP~qt~e~~~~~l~~~~~l~~~~is~y~L~~~ 233 (430)
T PRK08208 192 PILNIDLIY-GIPGQTHASWMESLDQALVYRPEELFLYPLYVR 233 (430)
T ss_pred CeEEEEeec-CCCCCCHHHHHHHHHHHHhCCCCEEEEcccccc
Confidence 5 3444433 12356889999999999999875 777776654
No 108
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.22 E-value=3.1e-09 Score=99.92 Aligned_cols=179 Identities=13% Similarity=0.205 Sum_probs=116.7
Q ss_pred ceEEEEeccCCcCccCccccCCCC-CCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCH--------HHHHHHHH
Q 023640 20 RSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNY--------AALVEAVR 90 (279)
Q Consensus 20 ~~~l~i~~~~gCNl~C~yC~~~~~-~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~--------~~i~~~i~ 90 (279)
+...|+..+.|||++|.||..+.. +..+..+++++++++..+... |++.|.|+| .....+. ..+.++++
T Consensus 151 ~~~~~i~I~rGC~~~CsfC~~p~~rG~~rsr~~e~Vv~Ei~~l~~~-G~~ei~l~g-~~~~~y~~~~~~~~~~~~~~Ll~ 228 (455)
T PRK14335 151 SFQSFIPIMNGCNNFCSYCIVPYVRGREISRDLDAILQEIDVLSEK-GVREITLLG-QNVNSYRGRDREGNIVTFPQLLR 228 (455)
T ss_pred CceEEEEhhcCCCCCCCCCCcccCCCCCccCCHHHHHHHHHHHHHC-CCeEEEEEe-ecccccccccccCCccCHHHHHH
Confidence 345667777999999999987532 234567899999999987764 788999988 6554321 13566776
Q ss_pred HHhC---CCCCCCCCeEEEE-cCCc--hhh-hHHHhccC-CCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHH
Q 023640 91 IMTG---LPFQVSPKRITVS-TVGI--VHA-INKFHSDL-PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 162 (279)
Q Consensus 91 ~~~~---~g~~~~~~~v~i~-TNG~--~~~-~~~l~~~~-~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~ 162 (279)
.+.+ ...++ ..+.+. ++-. ... ++.+++.. .-..+.+.+.+.+++..+.+. +..+.+.+.+.++ .+
T Consensus 229 ~l~~~~~~~~~i--~~ir~~s~~p~~i~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m~---R~~t~e~~~~~v~-~i 302 (455)
T PRK14335 229 HIVRRAEVTDQI--RWIRFMSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGSNGVLKRMN---RSYTREHYLSLVG-KL 302 (455)
T ss_pred HHHHhhcccCCc--eEEEEeecCcccCCHHHHHHHHhCCCCCCeEEEccCcCCHHHHHHcC---CCCCHHHHHHHHH-HH
Confidence 6631 10011 234332 2322 122 22233321 123566889999999888763 3578899999994 45
Q ss_pred Hhh--CCeEEEEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 163 KNS--QQKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 163 ~~~--~~~v~i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
++. +..+...+++ .| +++++++++.++++.++++. +++.+|.|.
T Consensus 303 r~~~pgi~i~~d~IvGfP--gET~edf~~Tl~~i~~l~~~~~~~~~~sp~ 350 (455)
T PRK14335 303 KASIPNVALSTDILIGFP--GETEEDFEQTLDLMREVEFDSAFMYHYNPR 350 (455)
T ss_pred HHhCCCCEEEEEEEEeCC--CCCHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 555 5555554444 34 57889999999999999875 777788887
No 109
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=99.21 E-value=1.4e-09 Score=99.09 Aligned_cols=196 Identities=16% Similarity=0.183 Sum_probs=127.2
Q ss_pred EEeccCCcCccCccccCCCCC---CccCCCHHHHHHHHHHHhccCCCceEEEecCCccc-cCHHHHHHHHHHHhCCCCCC
Q 023640 24 CISSQVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPL-NNYAALVEAVRIMTGLPFQV 99 (279)
Q Consensus 24 ~i~~~~gCNl~C~yC~~~~~~---~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPl-l~~~~i~~~i~~~~~~g~~~ 99 (279)
+++.+++|+.+|.||..+... ....++++++++.+.+... .|+..|.++| |+.. +..+.+.++++.+++..
T Consensus 51 ~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~a~~~~~-~G~~~v~l~~-G~~p~~~~~~~~e~i~~Ik~~~--- 125 (351)
T TIGR03700 51 HLNYTNICVNGCAFCAFQRERGEPGAYAMSLEEIVARVKEAYA-PGATEVHIVG-GLHPNLPFEWYLDMIRTLKEAY--- 125 (351)
T ss_pred CcccccccccCCccCceeCCCCCcccCCCCHHHHHHHHHHHHH-CCCcEEEEec-CCCCCCCHHHHHHHHHHHHHHC---
Confidence 366789999999999875321 1123799999999988765 4889999999 8754 34578899999999873
Q ss_pred CCCeEEEEc----------CCchh-h-hHHHhccCCCceEE-EEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhC
Q 023640 100 SPKRITVST----------VGIVH-A-INKFHSDLPGLNLA-VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 166 (279)
Q Consensus 100 ~~~~v~i~T----------NG~~~-~-~~~l~~~~~~~~i~-iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~ 166 (279)
+..++...| .|... + +.+|++.+. ..+. ..+++.+++.+..+.+. +.+.++.++.+ +.+++.|
T Consensus 126 p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAGl-d~~~~~g~E~~~~~v~~~i~~~--~~~~~~~l~~i-~~a~~~G 201 (351)
T TIGR03700 126 PDLHVKAFTAVEIHHFSKISGLPTEEVLDELKEAGL-DSMPGGGAEIFAEEVRQQICPE--KISAERWLEIH-RTAHELG 201 (351)
T ss_pred CCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcCC-CcCCCCcccccCHHHHhhcCCC--CCCHHHHHHHH-HHHHHcC
Confidence 223444322 34332 2 455666542 2232 36667778888887653 35678889999 5677888
Q ss_pred CeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE----EEEEecC--CCC-CCCCc--CCCCHHHHHHHHHHHH
Q 023640 167 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV----VNLIPFN--PIG-SVSQF--RTSSDDKVSSFQKILR 230 (279)
Q Consensus 167 ~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~----i~l~~~~--p~~-~~~~~--~~~~~e~l~~~~~~l~ 230 (279)
.++...++ =|..++.++..+.+..+.++++. ..++|++ |.+ +.... ..++.++..+.....+
T Consensus 202 i~~~sg~i--~GlgEt~edrv~~l~~Lr~l~~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e~lr~iA~~R 272 (351)
T TIGR03700 202 LKTNATML--YGHIETPAHRVDHMLRLRELQDETGGFQAFIPLAFQPDNNRLNRLLAKGPTGLDDLKTLAVSR 272 (351)
T ss_pred CCcceEEE--eeCCCCHHHHHHHHHHHHHhhHhhCCceEEEeecccCCCCcccCCCCCCCCHHHHHHHHHHHH
Confidence 77654443 36667888888888888887653 1334432 222 22222 4567777666665554
No 110
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=99.19 E-value=2.4e-09 Score=100.35 Aligned_cols=180 Identities=13% Similarity=0.246 Sum_probs=116.8
Q ss_pred CceEEEEeccCCcCccCccccCCCC-CCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccC--------HHHHHHHH
Q 023640 19 PRSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN--------YAALVEAV 89 (279)
Q Consensus 19 ~~~~l~i~~~~gCNl~C~yC~~~~~-~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~--------~~~i~~~i 89 (279)
.+...++.++.|||++|.||..+.. +..+..+++++++++..+.. .|+..|.|+| .....+ ...+.+++
T Consensus 143 ~~~~~~v~i~rGC~~~CsfC~~~~~~G~~rsr~~e~I~~Ei~~l~~-~g~~ei~l~~-~~~~~y~g~d~~~~~~~l~~Ll 220 (438)
T TIGR01574 143 GIYKSFINIMIGCNKFCTYCIVPYTRGDEISRPFDDILQEVQKLAE-KGVREITLLG-QNVNAYRGKDFEGKTMDFSDLL 220 (438)
T ss_pred CceeEEeehhcCCCCCCCCCCeeeecCCCcccCHHHHHHHHHHHHH-cCCeEEEEEe-cccCCccCCCCCCCcccHHHHH
Confidence 3456788888999999999987432 23467889999999998765 3788899988 544432 12466788
Q ss_pred HHHhCC-CCCCCCCeEEEEc-CCc--hhh-hHHHhccCC-CceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHH
Q 023640 90 RIMTGL-PFQVSPKRITVST-VGI--VHA-INKFHSDLP-GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 163 (279)
Q Consensus 90 ~~~~~~-g~~~~~~~v~i~T-NG~--~~~-~~~l~~~~~-~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~ 163 (279)
+.+.+. |+ ..+.+.+ +.. ..+ ++.+.+... ...+.+.+.+.+++..+.+. +..+.+.+.+.++. ++
T Consensus 221 ~~l~~~~~~----~~ir~~~~~p~~l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~m~---R~~t~~~~~~~v~~-ir 292 (438)
T TIGR01574 221 RELSTIDGI----ERIRFTSSHPLDFDDDLIEVFANNPKLCKSMHLPVQSGSSEILKLMK---RGYTREWYLNLVRK-LR 292 (438)
T ss_pred HHHHhcCCc----eEEEEecCCcccCCHHHHHHHHhCCCccCceeeCCCcCCHHHHHhcC---CCCCHHHHHHHHHH-HH
Confidence 877653 32 2344432 221 122 223333221 23466888999998887753 34778888888854 44
Q ss_pred hhCCeEEEEEEEeCC-CCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 164 NSQQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 164 ~~~~~v~i~~vv~~g-~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
+....+.+.+.++-| -.++++++.+.++++.++++. +++.+|.|.
T Consensus 293 ~~~~~i~i~~d~IvG~PgEt~ed~~~tl~~i~~~~~~~~~~~~~sp~ 339 (438)
T TIGR01574 293 AACPNVSISTDIIVGFPGETEEDFEETLDLLREVEFDSAFSFIYSPR 339 (438)
T ss_pred HhCCCCeEeeCEEEeCCCCCHHHHHHHHHHHHhcCCCeeeeEEecCC
Confidence 443233333333223 246889999999999998864 777778776
No 111
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=99.19 E-value=1.3e-09 Score=98.08 Aligned_cols=196 Identities=12% Similarity=0.114 Sum_probs=123.1
Q ss_pred EEEeccCCcCccCccccCCCCC---CccCCCHHHHHHHHHHHhccCCCceEEEecCCc-cccC----------------H
Q 023640 23 LCISSQVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE-PLNN----------------Y 82 (279)
Q Consensus 23 l~i~~~~gCNl~C~yC~~~~~~---~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GE-Pll~----------------~ 82 (279)
.++..|++|+.+|.||...... ....++++++++.+.++.+. |+..|.++| |+ |-.. .
T Consensus 6 ~~i~~tn~C~~~C~fCaf~~~~g~~~~~~l~~eeI~~~a~~~~~~-G~~ei~l~~-G~~p~~~~~~~~~~l~~~~~~~~~ 83 (322)
T TIGR03550 6 VFIPLTRLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAAA-GCTEALFTF-GEKPEERYPEAREWLAEMGYDSTL 83 (322)
T ss_pred EEeccccCcCCCCccCCccccCCCcccccCCHHHHHHHHHHHHHC-CCCEEEEec-CCCccccHHHHHHHHHhcCCccHH
Confidence 4566789999999999764321 12368999999999987764 788899998 87 3331 2
Q ss_pred HHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhh-hHHHhccCCCceEEEEeCCCCHHHHhhhcC-CCCCCCHHHHHHHHH
Q 023640 83 AALVEAVRIMTGL-PFQVSPKRITVSTVGIVHA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMP-AARAFPLEKLMNALK 159 (279)
Q Consensus 83 ~~i~~~i~~~~~~-g~~~~~~~v~i~TNG~~~~-~~~l~~~~~~~~i~iSld~~~~~~~~~i~~-~~~~~~~~~i~~~l~ 159 (279)
+++.++++.+++. + ...++........ +..+++.+ .++.+++++.++..+..+.. ......+++.++.+
T Consensus 84 ~~~~~~~~~i~~e~~-----~~~~~~~g~lt~e~l~~Lk~aG--~~~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i- 155 (322)
T TIGR03550 84 EYLRELCELALEETG-----LLPHTNPGVMSRDELARLKPVN--ASMGLMLETTSERLCKGEAHYGSPGKDPAVRLETI- 155 (322)
T ss_pred HHHHHHHHHHHHhcC-----CccccCCCCCCHHHHHHHHhhC--CCCCcchhhhccccccccccCCCCCCCHHHHHHHH-
Confidence 5677778878754 4 3334333332222 44455543 34455666655554332211 11223466778888
Q ss_pred HHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCC-----cE-EEEEecCCCC--CCCCcCCCCHHHHHHHHHHHH
Q 023640 160 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ-----VV-VNLIPFNPIG--SVSQFRTSSDDKVSSFQKILR 230 (279)
Q Consensus 160 ~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~-----~~-i~l~~~~p~~--~~~~~~~~~~e~l~~~~~~l~ 230 (279)
+.+++.|.++..-+ +=|..++.++..+.+..+++++ +. +-+.+|.|.. +....++++.++..+.....+
T Consensus 156 ~~a~~~Gi~~~s~~--i~G~gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~iAv~R 232 (322)
T TIGR03550 156 EDAGRLKIPFTTGI--LIGIGETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVAR 232 (322)
T ss_pred HHHHHcCCCcccee--eEeCCCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHHHHHHHH
Confidence 55677887755443 3366789999999998888775 42 4455677762 222344567777777655554
No 112
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.17 E-value=7.9e-09 Score=96.24 Aligned_cols=178 Identities=12% Similarity=0.264 Sum_probs=117.3
Q ss_pred CceEEEEeccCCcCccCccccCCCC-CCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccC---------HHHHHHH
Q 023640 19 PRSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN---------YAALVEA 88 (279)
Q Consensus 19 ~~~~l~i~~~~gCNl~C~yC~~~~~-~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~---------~~~i~~~ 88 (279)
.+...++.++.|||++|.||..+.. +..+..+++++++++...... |++.|.|+| ..-..+ ...+.++
T Consensus 125 ~~~~a~i~isrGC~~~CsFC~ip~~rG~~~sr~~e~I~~Ei~~l~~~-G~keI~l~~-~~~~~yg~d~~~~~~~~~l~~L 202 (420)
T PRK14339 125 SPYKSLVNISIGCDKKCTYCIVPHTRGKEISIPMDLILKEAEKAVNN-GAKEIFLLG-QNVNNYGKRFSSEHEKVDFSDL 202 (420)
T ss_pred CCeEEEEEecCCCCCCCCcCCcccccCCCCCCCHHHHHHHHHHHHHC-CCcEEEEee-eccccccCCCcCCcccccHHHH
Confidence 3456777778999999999987642 233457899999999987653 788999998 553321 0136778
Q ss_pred HHHHhCC-CCCCCCCeEEEE-cCCc--hhh-hHHHhccC-CCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHH
Q 023640 89 VRIMTGL-PFQVSPKRITVS-TVGI--VHA-INKFHSDL-PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 162 (279)
Q Consensus 89 i~~~~~~-g~~~~~~~v~i~-TNG~--~~~-~~~l~~~~-~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~ 162 (279)
++.+.+. |+ ..+.+. ++.. ..+ ++.+++.. .-..+.|.+.+.+++..+.+. +..+.+.+++.++. +
T Consensus 203 l~~l~~~~g~----~~ir~~s~~p~~~~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~M~---R~~t~~~~~~~v~~-l 274 (420)
T PRK14339 203 LDKLSEIEGL----ERIRFTSPHPLHMDDKFLEEFAKNPKICKSIHMPLQSGSSEILKAMK---RGYTKEWFLNRAEK-L 274 (420)
T ss_pred HHHHhcCCCc----cEEEECCCChhhcCHHHHHHHHcCCCccCceEeCCccCCHHHHHhcc---CCCCHHHHHHHHHH-H
Confidence 8777664 42 235543 2221 122 22233321 123577889999999888774 34678888888854 4
Q ss_pred Hhh--CCeEEEEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 163 KNS--QQKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 163 ~~~--~~~v~i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
++. +..+...+++ .| +++++++++.++++.++++. +++.+|.|.
T Consensus 275 r~~~p~i~i~~d~IvGfP--gETeedf~~Tl~fl~~l~~~~~~~f~~sp~ 322 (420)
T PRK14339 275 RALVPEVSISTDIIVGFP--GESDKDFEDTMDVLEKVRFEQIFSFKYSPR 322 (420)
T ss_pred HHHCCCCEEEEEEEEECC--CCCHHHHHHHHHHHHhcCCCEEeeEecCCC
Confidence 444 4444443333 24 46889999999999998875 777788887
No 113
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.17 E-value=7.5e-09 Score=97.63 Aligned_cols=178 Identities=12% Similarity=0.189 Sum_probs=114.3
Q ss_pred ceEEEEeccCCcCccCccccCCCC-CCccCCCHHHHHHHHHHHhccCCCceEEEecCCcccc-----------CHHHHHH
Q 023640 20 RSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLN-----------NYAALVE 87 (279)
Q Consensus 20 ~~~l~i~~~~gCNl~C~yC~~~~~-~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll-----------~~~~i~~ 87 (279)
+...++.++.|||++|.||..+.. +..+..+++++++++..+... |++.|.|+| ..-.. +...+.+
T Consensus 167 ~~~a~i~isrGCp~~CsFC~ip~~~G~~rsrs~e~Vv~Ei~~l~~~-g~~eI~l~~-~~~~~y~~d~~~~~~~~~~~l~~ 244 (467)
T PRK14329 167 GVSAFVSIMRGCDNMCTFCVVPFTRGRERSRDPESILNEVRDLFAK-GYKEVTLLG-QNVDSYLWYGGGLKKDEAVNFAQ 244 (467)
T ss_pred CcEEEEEeccCcccCCCCCccccccCCcccCCHHHHHHHHHHHHHC-CCeEEEEEe-ecccccccccCCccccccccHHH
Confidence 345677778999999999987532 234678999999999987754 788888876 22110 0124667
Q ss_pred HHHHHhCCCCCCCCCeEEEEcC---Cchhhh-HHHhccC-CCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHH
Q 023640 88 AVRIMTGLPFQVSPKRITVSTV---GIVHAI-NKFHSDL-PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 162 (279)
Q Consensus 88 ~i~~~~~~g~~~~~~~v~i~TN---G~~~~~-~~l~~~~-~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~ 162 (279)
+++.+.+.. +...+.+.+. .....+ ..+++.. .-..+.|.+.+.+++..+.+. +..+.+.+.+.++. +
T Consensus 245 Ll~~l~~~~---~~~~ir~~~~~p~~l~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~m~---R~~t~~~~~~~i~~-i 317 (467)
T PRK14329 245 LLEMVAEAV---PDMRIRFSTSHPKDMTDDVLEVMAKYDNICKHIHLPVQSGSDRILKLMN---RKYTREWYLDRIDA-I 317 (467)
T ss_pred HHHHHHhcC---CCcEEEEecCCcccCCHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHhcC---CCCCHHHHHHHHHH-H
Confidence 777776531 0134555542 122222 2233321 123577889999999888774 34677888888844 4
Q ss_pred Hhh--CCeEEEEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 163 KNS--QQKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 163 ~~~--~~~v~i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
++. +..+...+++ .| +++++++++.++++.+++.. +++.+|.|.
T Consensus 318 r~~~~~~~i~~d~IvGfP--gET~edf~~tl~~i~~l~~~~~~v~~~sp~ 365 (467)
T PRK14329 318 RRIIPDCGISTDMIAGFP--TETEEDHQDTLSLMEEVGYDFAFMFKYSER 365 (467)
T ss_pred HHhCCCCEEEEeEEEeCC--CCCHHHHHHHHHHHHhhCCCeEeeeEecCC
Confidence 444 3334433333 24 56889999999999999865 777777776
No 114
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=99.16 E-value=2e-08 Score=89.52 Aligned_cols=197 Identities=14% Similarity=0.184 Sum_probs=124.0
Q ss_pred cCCcCc--------cCccccCCCCCCcc---CCCHHHHHHHHHHHh---ccCCCceEEEecCCccccC-HHHHHHHHHHH
Q 023640 28 QVGCKM--------GCNFCATGTMGFKS---NLSSGEIVEQLVHAS---RLSNIRNVVFMGMGEPLNN-YAALVEAVRIM 92 (279)
Q Consensus 28 ~~gCNl--------~C~yC~~~~~~~~~---~~~~~ei~~~i~~~~---~~~~~~~I~fsG~GEPll~-~~~i~~~i~~~ 92 (279)
+-.||. .|.||......... ..+.+++.+++.+.. ...+...|.|.| |.|+.. .+.+.++++.+
T Consensus 25 g~~cpnrdg~~~~~gC~FC~~~~~~~~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iyf~g-gt~t~l~~~~L~~l~~~i 103 (302)
T TIGR01212 25 GFSCPNRDGTKGRGGCTFCNDASRPIFADEYTQARIPIKEQIKKQMKKYKKDKKFIAYFQA-YTNTYAPVEVLKEMYEQA 103 (302)
T ss_pred CCCCCCCCCCCCCCCcccCCCCCCccccccccccCCCHHHHHHHHHHHhhccCEEEEEEEC-CCcCCCCHHHHHHHHHHH
Confidence 467998 59999874322211 122333444444322 212233488888 999954 67788999988
Q ss_pred hCCCCCCCCCeEEEEcCCchhh---hHHHhccCC-Cc--eEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhC
Q 023640 93 TGLPFQVSPKRITVSTVGIVHA---INKFHSDLP-GL--NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 166 (279)
Q Consensus 93 ~~~g~~~~~~~v~i~TNG~~~~---~~~l~~~~~-~~--~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~ 166 (279)
.+.. ....+++.|+.-... ++.+.+... .. .+.+.+++.++++.+.+.+ ..+.+.+++++ +.++++|
T Consensus 104 ~~~~---~~~~isi~trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~R---g~t~~~~~~ai-~~l~~~g 176 (302)
T TIGR01212 104 LSYD---DVVGLSVGTRPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINR---GHDFACYVDAV-KRARKRG 176 (302)
T ss_pred hCCC---CEEEEEEEecCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcC---cChHHHHHHHH-HHHHHcC
Confidence 8752 124677777653221 222222111 23 3557789999999888843 46789999999 5677888
Q ss_pred CeEEEEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCC--------CCCCcCCCCHHH-HHHHHHHHHhcCCe
Q 023640 167 QKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG--------SVSQFRTSSDDK-VSSFQKILRGSYNI 235 (279)
Q Consensus 167 ~~v~i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~--------~~~~~~~~~~e~-l~~~~~~l~~~~gi 235 (279)
..+.+.+++ +| .++.+++.+.++++.++++. +.+.++.|.. ....+.+++.++ ++.+...++ ....
T Consensus 177 i~v~~~lI~GlP--get~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~-~l~~ 253 (302)
T TIGR01212 177 IKVCSHVILGLP--GEDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYEKGELKTLSLEEYISLACDFLE-HLPP 253 (302)
T ss_pred CEEEEeEEECCC--CCCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHH-hCCc
Confidence 877765544 33 57889999999999999875 7777777653 122345567666 556666666 4443
No 115
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.16 E-value=1e-08 Score=97.47 Aligned_cols=177 Identities=14% Similarity=0.291 Sum_probs=116.2
Q ss_pred ceEEEEeccCCcCccCccccCCCC-CCccCCCHHHHHHHHHHHhccCCCceEEEecCCcc------ccCHHHHHHHHHHH
Q 023640 20 RSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEP------LNNYAALVEAVRIM 92 (279)
Q Consensus 20 ~~~l~i~~~~gCNl~C~yC~~~~~-~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEP------ll~~~~i~~~i~~~ 92 (279)
+...++.++.|||++|.||..+.. +..+..+++++++++..+... ++..|.|+| -.= +-+...+.++++.+
T Consensus 156 ~~~a~v~isrGCp~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~-g~~ei~l~d-~n~~~yG~d~~~~~~l~~Ll~~l 233 (502)
T PRK14326 156 AYAAWVSISVGCNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVDE-GVLEVTLLG-QNVNAYGVSFGDRGAFSKLLRAC 233 (502)
T ss_pred CceEEEEEccCCCCCCccCceeccCCCcccCCHHHHHHHHHHHHHC-CCceEEEEe-ecccccccCCCCHHHHHHHHHHH
Confidence 345677788999999999988543 234678899999999987764 788888877 221 12334566777777
Q ss_pred hCC-CCCCCCCeEEEEcCC---chhh-hHHHhccCC-CceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhh-
Q 023640 93 TGL-PFQVSPKRITVSTVG---IVHA-INKFHSDLP-GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS- 165 (279)
Q Consensus 93 ~~~-g~~~~~~~v~i~TNG---~~~~-~~~l~~~~~-~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~- 165 (279)
.+. |+ ..+.+.+.- ...+ +..+++... ...+.+.+.+.+++..+.+. ++.+.+.+.+.++. +++.
T Consensus 234 ~~i~~l----~~ir~~~~~p~~~~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~m~---R~~t~~~~~~~v~~-lr~~~ 305 (502)
T PRK14326 234 GEIDGL----ERVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLRAMR---RSYRSERFLGILEK-VRAAM 305 (502)
T ss_pred HhcCCc----cEEEEeccChhhCCHHHHHHHHhcCCcCCcEEeccCCCCHHHHHhcC---CCCCHHHHHHHHHH-HHHhC
Confidence 654 31 235554321 1122 222333321 23567889999999888764 34788888888854 4444
Q ss_pred -CCeEEEEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 166 -QQKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 166 -~~~v~i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
+..+...+++ .| +++++++.+.++++.++++. +.+.+|.|.
T Consensus 306 ~~i~i~~~~IvGfP--gET~edf~~Tl~~i~~~~~~~~~~f~~sp~ 349 (502)
T PRK14326 306 PDAAITTDIIVGFP--GETEEDFQATLDVVREARFSSAFTFQYSKR 349 (502)
T ss_pred CCCeEEEEEEEECC--CCCHHHHHHHHHHHHHcCCCEEEEEeecCC
Confidence 4445544443 24 56889999999999998865 666667776
No 116
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.15 E-value=8.5e-09 Score=96.53 Aligned_cols=178 Identities=16% Similarity=0.317 Sum_probs=114.3
Q ss_pred ceEEEEeccCCcCccCccccCCCC-CCccCCCHHHHHHHHHHHhccCCCceEEEec-----CCccccCHHHHHHHHHHHh
Q 023640 20 RSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMG-----MGEPLNNYAALVEAVRIMT 93 (279)
Q Consensus 20 ~~~l~i~~~~gCNl~C~yC~~~~~-~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG-----~GEPll~~~~i~~~i~~~~ 93 (279)
+...++..+.|||++|.||..+.. +..+..+++++++++..+... |++.|.|+| +|-.+-+...+.++++.+.
T Consensus 139 ~~~~~v~i~rGC~~~CsFC~ip~~~G~~rsr~~e~Iv~Ei~~l~~~-g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~ 217 (434)
T PRK14330 139 KHHAWVTIIYGCNRFCTYCIVPYTRGREKSRPMEDILEEVEKLAKQ-GYREVTFLGQNVDAYGKDLKDGSSLAKLLEEAS 217 (434)
T ss_pred CcEEEEEcccCCCCCCCCCceECcCCCCccCCHHHHHHHHHHHHHC-CCcEEEEEEecccccccCCCCCccHHHHHHHHH
Confidence 345667778999999999987532 234678899999999987653 788898876 2222222234667777665
Q ss_pred CC-CCCCCCCeEEEEc-C--CchhhhHHHhccCCC--ceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhh--
Q 023640 94 GL-PFQVSPKRITVST-V--GIVHAINKFHSDLPG--LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-- 165 (279)
Q Consensus 94 ~~-g~~~~~~~v~i~T-N--G~~~~~~~l~~~~~~--~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~-- 165 (279)
+. +. ..+.+.+ + ....++.++....+. ..+.|.+.+.+++..+.+. +..+.+.+.+.++. +++.
T Consensus 218 ~~~~~----~~~~~~~~~p~~~~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~---R~~~~~~~~~~i~~-lr~~~~ 289 (434)
T PRK14330 218 KIEGI----ERIWFLTSYPTDFSDELIEVIANSPKVAKSIHLPVQSGSNRILKLMN---RRYTREEYLELIEK-IRSKVP 289 (434)
T ss_pred hcCCc----eEEEEecCChhhcCHHHHHHHhcCCcccCceecCcCCCCHHHHHhcC---CCCCHHHHHHHHHH-HHHhCC
Confidence 54 31 1233322 2 122222222222221 2466888999999888764 34678888888854 4443
Q ss_pred CCeEEEEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 166 QQKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 166 ~~~v~i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
+..+...+++ .| +++++++++.++++.++++. +++.+|.|.
T Consensus 290 ~i~i~~d~IvGfP--gET~edf~~tl~fi~~~~~~~~~~~~~sp~ 332 (434)
T PRK14330 290 DASISSDIIVGFP--TETEEDFMETVDLVEKAQFERLNLAIYSPR 332 (434)
T ss_pred CCEEEEEEEEECC--CCCHHHHHHHHHHHHhcCCCEEeeeeccCC
Confidence 4445544443 34 46889999999999999875 777888887
No 117
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=99.14 E-value=2.6e-08 Score=89.23 Aligned_cols=229 Identities=14% Similarity=0.145 Sum_probs=135.5
Q ss_pred EeccCCcCc----cCccccCCCCCCccCCCHHHHHHHHHHHhccCCCc----e-EEEecCC---ccccC-HHHHHHHHHH
Q 023640 25 ISSQVGCKM----GCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIR----N-VVFMGMG---EPLNN-YAALVEAVRI 91 (279)
Q Consensus 25 i~~~~gCNl----~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~~~~~----~-I~fsG~G---EPll~-~~~i~~~i~~ 91 (279)
+.++.||++ +|.||...... .+..+++++.+++.+.....+.. . -.|++ | +|... ++.+.++++.
T Consensus 19 i~~srGC~~~~~g~C~FC~~~~~~-~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~s-gsf~D~~~~~~~~~~~i~~~ 96 (313)
T TIGR01210 19 ILRTRGCYWAREGGCYMCGYLADS-SPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTS-GSFLDDREVPKETRNYIFEK 96 (313)
T ss_pred EEeCCCCCCCCCCcCccCCCCCCC-CCCCChhHHHHHHHHHHHHhhcccccEEEEEecC-CCcCCcCcCCHHHHHHHHHH
Confidence 345799999 59999654322 23568999999998765432222 1 23666 6 66654 5667888888
Q ss_pred HhCCCCCCCCCeEEEEcCCchhh---hHHHhccCCCceEEEEeCCCCHHHHh-hhcCCCCCCCHHHHHHHHHHHHHhhCC
Q 023640 92 MTGLPFQVSPKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRC-QIMPAARAFPLEKLMNALKEYQKNSQQ 167 (279)
Q Consensus 92 ~~~~g~~~~~~~v~i~TNG~~~~---~~~l~~~~~~~~i~iSld~~~~~~~~-~i~~~~~~~~~~~i~~~l~~~~~~~~~ 167 (279)
+++.+. + ..+.+.|+.-..+ +..+++.+....|.|.+++.+++..+ .+ +++.+.+.+.+++ +.+++.|.
T Consensus 97 l~~~~~-~--~~i~~esrpd~i~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~i---nKg~t~~~~~~ai-~~~~~~Gi 169 (313)
T TIGR01210 97 IAQRDN-L--KEVVVESRPEFIDEEKLEELRKIGVNVEVAVGLETANDRIREKSI---NKGSTFEDFIRAA-ELARKYGA 169 (313)
T ss_pred HHhcCC-c--ceEEEEeCCCcCCHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhh---CCCCCHHHHHHHH-HHHHHcCC
Confidence 877631 1 3577777663222 33444543212577888999999885 56 3456899999999 66788898
Q ss_pred eEEEEEEE-eCCCC--CcHHHHHHHHHHHhhCCcEEEEEecCCCC--------CCCCcCCCCHHHHHHHHHHHHhcCCeE
Q 023640 168 KIFIEYIM-LDGVN--DEEQHAHQLGKLLETFQVVVNLIPFNPIG--------SVSQFRTSSDDKVSSFQKILRGSYNIR 236 (279)
Q Consensus 168 ~v~i~~vv-~~g~n--d~~~~l~~l~~~l~~~~~~i~l~~~~p~~--------~~~~~~~~~~e~l~~~~~~l~~~~gi~ 236 (279)
.+...+++ .|+.. ++.+++.+.++++..++..+.+.|+++.. ....|.++.--...++.+.++ ..+..
T Consensus 170 ~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l~~~vs~~~l~v~~gT~l~~~~~~G~~~pp~lws~~e~l~e~~-~~~~~ 248 (313)
T TIGR01210 170 GVKAYLLFKPPFLSEKEAIADMISSIRKCIPVTDTVSINPTNVQKGTLVEFLWNRGLYRPPWLWSVAEVLKEAK-KIGAE 248 (313)
T ss_pred cEEEEEEecCCCCChhhhHHHHHHHHHHHHhcCCcEEEECCEEeCCCHHHHHHHcCCCCCCCHHHHHHHHHHHH-hhCCe
Confidence 87776655 23322 33455666777777776337766666552 122455553333333333333 22333
Q ss_pred EE-----eccccccccccccccccccCcCccC
Q 023640 237 TT-----VRKQMGQDISGACGQLVVNLPDKIS 263 (279)
Q Consensus 237 v~-----vr~~~g~~~~~~cg~~~~~~~~~~~ 263 (279)
+. ....+|...+..|...+...=++.+
T Consensus 249 ~~~d~~g~~~~rg~~nc~~c~~~~~~~~~~~~ 280 (313)
T TIGR01210 249 VLSDPVGAGSDRGAHNCGKCDKRVKEAIRKFS 280 (313)
T ss_pred EEecCCCCCCcCCCcCcchhhHHHHHHHHHhc
Confidence 22 2223455556667666665444444
No 118
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=99.14 E-value=1.2e-09 Score=98.92 Aligned_cols=144 Identities=18% Similarity=0.259 Sum_probs=99.5
Q ss_pred cCCCHHHHHHHHHHHhcc--CCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhh-----hHHHh
Q 023640 47 SNLSSGEIVEQLVHASRL--SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHA-----INKFH 119 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~--~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~-----~~~l~ 119 (279)
-+.+.+++-+.++.++.. .+...|.|+| ||||++ ++|.++++.+++.|+ .++.+.|||..+. ..++.
T Consensus 89 YEpt~eqi~~Ml~~lk~e~p~~~~aIq~tG-GEPTvr-~DL~eiv~~a~e~g~----~hVqinTnGirlA~~~~~~~~l~ 162 (475)
T COG1964 89 YEPTLEQIREMLRNLKKEHPVGANAVQFTG-GEPTLR-DDLIEIIKIAREEGY----DHVQLNTNGIRLAFDPEYVKKLR 162 (475)
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCceeEecC-CCccch-hhHHHHHHHHhhcCc----cEEEEccCceeeccCHHHHHHHH
Confidence 356777777666665543 2457999999 999996 889999999999985 7999999996432 23455
Q ss_pred ccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCe-EEEEEEEeCCCCCcHHHHHHHHHHHhhC-C
Q 023640 120 SDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETF-Q 197 (279)
Q Consensus 120 ~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~-v~i~~vv~~g~nd~~~~l~~l~~~l~~~-~ 197 (279)
.++ ...+.+|.|+.+++.+.... +....++++. ++.|.. +.+--++.+|+||+ ++..++++.... .
T Consensus 163 ~ag-~~tvYlsFDG~~e~~~~~~~-----~eIk~alen~----r~~g~~svVLVptl~rgvNd~--~lG~iirfa~~n~d 230 (475)
T COG1964 163 EAG-VNTVYLSFDGVTPKTNWKNH-----WEIKQALENC----RKAGLPSVVLVPTLIRGVNDH--ELGAIIRFALNNID 230 (475)
T ss_pred hcC-CcEEEEecCCCCCCchhhHh-----hhhHHHHHHH----HhcCCCcEEEEeehhcccChH--HHHHHHHHHHhccc
Confidence 554 35678999999998877651 3333334433 345533 66666778888775 689999988753 2
Q ss_pred -cE-EEEEecCCC
Q 023640 198 -VV-VNLIPFNPI 208 (279)
Q Consensus 198 -~~-i~l~~~~p~ 208 (279)
++ +++.|+.-.
T Consensus 231 vVrgVnfQPVslt 243 (475)
T COG1964 231 VVRGVNFQPVSLT 243 (475)
T ss_pred cccccceEEEEEe
Confidence 23 566665433
No 119
>PRK07360 FO synthase subunit 2; Reviewed
Probab=99.14 E-value=2.6e-09 Score=97.85 Aligned_cols=164 Identities=16% Similarity=0.184 Sum_probs=110.1
Q ss_pred EeccCCcCccCccccCCCCC---CccCCCHHHHHHHHHHHhccCCCceEEEecCC-ccccC-HHHHHHHHHHHhCCCCCC
Q 023640 25 ISSQVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMG-EPLNN-YAALVEAVRIMTGLPFQV 99 (279)
Q Consensus 25 i~~~~gCNl~C~yC~~~~~~---~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~G-EPll~-~~~i~~~i~~~~~~g~~~ 99 (279)
+..++.|+.+|.||...... ....++.+++++.++++.. .|+..|.++| | .|... .+++.++++.+|+.-
T Consensus 64 i~~Tn~C~~~C~fC~~~~~~~~~~~y~ls~eeI~~~a~~a~~-~G~~~i~l~~-G~~p~~~~~e~~~~~i~~ik~~~--- 138 (371)
T PRK07360 64 INFTNICEGHCGFCAFRRDEGDHGAFWLTIAEILEKAAEAVK-RGATEVCIQG-GLHPAADSLEFYLEILEAIKEEF--- 138 (371)
T ss_pred cccchhhhcCCccCCcccCCCCCCCeeCCHHHHHHHHHHHHh-CCCCEEEEcc-CCCCCCCcHHHHHHHHHHHHHhC---
Confidence 33479999999999874321 1235899999999988775 4899999999 8 57775 778999999999751
Q ss_pred CCCeEEEE----------cCCchhh--hHHHhccCCCceEE-EEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhC
Q 023640 100 SPKRITVS----------TVGIVHA--INKFHSDLPGLNLA-VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 166 (279)
Q Consensus 100 ~~~~v~i~----------TNG~~~~--~~~l~~~~~~~~i~-iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~ 166 (279)
+..++... +.|.... +.+|.+.+. ..+. -+-...+++.+..+.+. ..+.+..++.+ +.+++.|
T Consensus 139 ~~i~i~a~s~~ei~~~~~~~G~~~~e~l~~LkeAGl-d~~~~t~~e~l~~~vr~~i~p~--~~s~~~~l~~i-~~a~~~G 214 (371)
T PRK07360 139 PDIHLHAFSPMEVYFAAREDGLSYEEVLKALKDAGL-DSMPGTAAEILVDEVRRIICPE--KIKTAEWIEIV-KTAHKLG 214 (371)
T ss_pred CCcceeeCCHHHHHHHHhhcCCCHHHHHHHHHHcCC-CcCCCcchhhccHHHHHhhCCC--CCCHHHHHHHH-HHHHHcC
Confidence 12344432 4565432 455666542 1221 12222345566666543 34777888988 6678888
Q ss_pred CeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE
Q 023640 167 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 199 (279)
Q Consensus 167 ~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~ 199 (279)
.++.- .++-|+..+.++..+.+.+++++++.
T Consensus 215 l~~~s--g~i~G~gEt~edrv~~l~~lr~l~~~ 245 (371)
T PRK07360 215 LPTTS--TMMYGHVETPEHRIDHLLILREIQQE 245 (371)
T ss_pred CCcee--eEEeeCCCCHHHHHHHHHHHHHhchh
Confidence 77754 33446677888999999999988764
No 120
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.12 E-value=2.1e-08 Score=94.19 Aligned_cols=179 Identities=13% Similarity=0.226 Sum_probs=116.5
Q ss_pred ceEEEEeccCCcCccCccccCCCC-CCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccC-------HHHHHHHHHH
Q 023640 20 RSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN-------YAALVEAVRI 91 (279)
Q Consensus 20 ~~~l~i~~~~gCNl~C~yC~~~~~-~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~-------~~~i~~~i~~ 91 (279)
+...|+..+.|||++|.||..+.. +..+..+++++++++...... |++.|.|+| ..-..+ ...+.++++.
T Consensus 147 ~~~a~v~i~rGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~-G~~eI~l~~-~~~~~yg~d~~~~~~~l~~Ll~~ 224 (446)
T PRK14337 147 PASAFVNIMQGCDNFCAYCIVPYTRGRQKSRSSAAVLDECRALVDR-GAREITLLG-QNVNSYGQDKHGDGTSFAQLLHK 224 (446)
T ss_pred CcEEEEEeccCCCCCCcCCCcccCCCCCeeCCHHHHHHHHHHHHHC-CCeEEEEEe-cCccccccCCCCCCccHHHHHHH
Confidence 456778778999999999987532 334678899999999987764 788999988 433211 1246677777
Q ss_pred HhCC-CCCCCCCeEEEEc---CCchhh-hHHHhccC-CCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhh
Q 023640 92 MTGL-PFQVSPKRITVST---VGIVHA-INKFHSDL-PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 165 (279)
Q Consensus 92 ~~~~-g~~~~~~~v~i~T---NG~~~~-~~~l~~~~-~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~ 165 (279)
+.+. |. ..+.+.+ +.+..+ +..+++.. ....+.+.+.+.+++..+.+. ++.+.+.+.++++.+ ++.
T Consensus 225 l~~~~g~----~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~---R~~t~e~~~~~v~~l-r~~ 296 (446)
T PRK14337 225 VAALPGL----ERLRFTTPHPKDIAPEVIEAFGELPNLCPRLHLPLQSGSDRILKAMG---RKYDMARYLDIVTDL-RAA 296 (446)
T ss_pred HHhcCCC----cEEEEccCCcccCCHHHHHHHHhCCcccCeEEECCCCCCHHHHHhCC---CCCCHHHHHHHHHHH-HHh
Confidence 7654 31 2355433 222222 22233321 123567888999999888763 347788888888544 444
Q ss_pred CCeEEEEEEEeCC-CCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 166 QQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 166 ~~~v~i~~vv~~g-~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
...+.+.+.++-| -+++++++.+.++++.++++. +++.+|.|.
T Consensus 297 ~~~i~i~~d~IvG~PgET~ed~~~tl~~l~~~~~~~~~~f~ysp~ 341 (446)
T PRK14337 297 RPDIALTTDLIVGFPGETEEDFEQTLEAMRTVGFASSFSFCYSDR 341 (446)
T ss_pred CCCCeEEEeEEEECCCCCHHHHHHHHHHHHhcCCCeeEEEecCCC
Confidence 3233333333322 246889999999999999875 777778776
No 121
>PRK08445 hypothetical protein; Provisional
Probab=99.12 E-value=6.1e-09 Score=94.53 Aligned_cols=195 Identities=14% Similarity=0.147 Sum_probs=126.5
Q ss_pred EeccCCcCccCccccCCCC---CCccCCCHHHHHHHHHHHhccCCCceEEEecCCccc-cCHHHHHHHHHHHhCCCCCCC
Q 023640 25 ISSQVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPL-NNYAALVEAVRIMTGLPFQVS 100 (279)
Q Consensus 25 i~~~~gCNl~C~yC~~~~~---~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPl-l~~~~i~~~i~~~~~~g~~~~ 100 (279)
++.+++|+.+|.||..+.. .....++++++++.+.++... +...|.++| |++. +..+.+.++++.+++.. +
T Consensus 46 in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~~~~a~~~-g~~~i~~~g-g~~~~~~~e~~~~l~~~Ik~~~---p 120 (348)
T PRK08445 46 INYTNICWVDCKFCAFYRHLKEDDAYILSFEEIDKKIEELLAI-GGTQILFQG-GVHPKLKIEWYENLVSHIAQKY---P 120 (348)
T ss_pred cccccccccCCccCCCccCCCCCCCeeCCHHHHHHHHHHHHHc-CCCEEEEec-CCCCCCCHHHHHHHHHHHHHHC---C
Confidence 5568999999999987542 122356999999999987764 678999998 7555 55788899999999873 1
Q ss_pred CCeEEEEcCC----------ch--hhhHHHhccCCCceE-EEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCC
Q 023640 101 PKRITVSTVG----------IV--HAINKFHSDLPGLNL-AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 167 (279)
Q Consensus 101 ~~~v~i~TNG----------~~--~~~~~l~~~~~~~~i-~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~ 167 (279)
.+++.-.|.+ .. ..+.+|++.+. ..+ .+.+++.+++.++.+.+. ..+.++.++.+ +.+++.|.
T Consensus 121 ~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl-~~~~g~glE~~~d~v~~~~~pk--~~t~~~~i~~i-~~a~~~Gi 196 (348)
T PRK08445 121 TITIHGFSAVEIDYIAKISKISIKEVLERLQAKGL-SSIPGAGAEILSDRVRDIIAPK--KLDSDRWLEVH-RQAHLIGM 196 (348)
T ss_pred CcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCC-CCCCCCceeeCCHHHHHhhCCC--CCCHHHHHHHH-HHHHHcCC
Confidence 2333222221 11 12445556542 334 367788889898888653 35677778888 56788888
Q ss_pred eEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE---EE---EEecCCCC-CCC----CcCCCCHHHHHHHHHHHH
Q 023640 168 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV---VN---LIPFNPIG-SVS----QFRTSSDDKVSSFQKILR 230 (279)
Q Consensus 168 ~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~---i~---l~~~~p~~-~~~----~~~~~~~e~l~~~~~~l~ 230 (279)
++...++ -|..++.++..+.+.++++++.. ++ +..|.|.+ +.. ..+.++.++..+.....+
T Consensus 197 ~~~sg~i--~G~~Et~edr~~~l~~lreLq~~~~g~~~fi~~~~~p~~tpl~~~~~~~~~~~~~e~Lr~iAv~R 268 (348)
T PRK08445 197 KSTATMM--FGTVENDEEIIEHWERIRDLQDETGGFRAFILWSFQPDNTPLKEEIPEIKKQSSNRYLRLLAVSR 268 (348)
T ss_pred eeeeEEE--ecCCCCHHHHHHHHHHHHHHHHHhCCeeEEeccccCCCCCcccccCCCCCCCCHHHHHHHHHHHH
Confidence 7765444 35667888999999999887653 22 22344422 111 122467777666655544
No 122
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=99.09 E-value=8.8e-09 Score=92.85 Aligned_cols=198 Identities=16% Similarity=0.200 Sum_probs=130.2
Q ss_pred CccccCCCCC-CccCCCHHHHHHHHHHHh--ccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCc
Q 023640 35 CNFCATGTMG-FKSNLSSGEIVEQLVHAS--RLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGI 111 (279)
Q Consensus 35 C~yC~~~~~~-~~~~~~~~ei~~~i~~~~--~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~ 111 (279)
|.||+..... ......+..+.+...+.. .+..+..++.+|.|+++.+ .++.+..++++..+......-...+.||.
T Consensus 44 C~~cy~~v~~~~~~~~~~~~v~~e~~~~lg~~~e~~~~~~~~~~~d~~c~-p~le~~~~r~~~~~~d~~~rL~~tsG~~~ 122 (414)
T COG1625 44 CDDCYLSVNELDTGFIPPLMVEKEPDEDLGLEFEEVLGAKQCGNGDTFCY-PDLEPRGRRARLYYKDDDIRLSFTSGSGF 122 (414)
T ss_pred ccceeeEEecccCCCCCHhHhhcccccccccccccccceeecCCCCcccC-cchhhhhhHHHhhcCCccceeeeeeccce
Confidence 8888764221 124455666666665321 1112337888888999996 56889999998874222123344556665
Q ss_pred hhh--hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHH
Q 023640 112 VHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQL 189 (279)
Q Consensus 112 ~~~--~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l 189 (279)
... .+++.+.+ ...+.||+++.+++.++++++. ..-+++++.++.+ .+..+++...++++||+||- +++.+.
T Consensus 123 ~lt~~~~~i~~~g-vdev~~SVhtT~p~lR~klm~n---~~A~~~le~L~~f-~~~~~~v~a~iVl~PGvNdg-e~L~kT 196 (414)
T COG1625 123 TLTNRAERIIDAG-VDEVYFSVHTTNPELRAKLMKN---PNAEQLLELLRRF-AERCIEVHAQIVLCPGVNDG-EELEKT 196 (414)
T ss_pred eccchHHHHHHcC-CCeeEEEEeeCCHHHHHHHhcC---CcHHHHHHHHHHH-HHhhhheeeEEEEcCCcCcH-HHHHHH
Confidence 432 34455554 3558999999999999999854 3445688888554 45667899999999999986 689999
Q ss_pred HHHHhhCCcE-EEEEecCCCC----CCCCcCCCCHHHHHHHHHHHH---hcCC-eEEEe
Q 023640 190 GKLLETFQVV-VNLIPFNPIG----SVSQFRTSSDDKVSSFQKILR---GSYN-IRTTV 239 (279)
Q Consensus 190 ~~~l~~~~~~-i~l~~~~p~~----~~~~~~~~~~e~l~~~~~~l~---~~~g-i~v~v 239 (279)
.+-|.++|.+ +.++.+.|.| .....+.+..+++.++.++.+ ++.| +.|.-
T Consensus 197 ~~dL~~~g~~~~~~~~~~pvGlt~~n~~~i~~~t~~~l~~~k~i~re~~~E~~~~~V~g 255 (414)
T COG1625 197 LEDLEEWGAHEVILMRVVPVGLTRYNRPGIRPPTPHELEEFKEIVREFDRELGSIRVTG 255 (414)
T ss_pred HHHHHHhCcCceeEEEeecceeeecCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeC
Confidence 9999998876 4444345554 111345667888888877655 2567 65543
No 123
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=99.08 E-value=1.7e-08 Score=91.85 Aligned_cols=203 Identities=10% Similarity=0.151 Sum_probs=126.4
Q ss_pred ceEEEEeccCCcCccCccccCCCCCCcc-C-CCHHHHHHHHHH-Hh--ccCCCceEEEecCCcccc-CHHHHHHHHHHHh
Q 023640 20 RSTLCISSQVGCKMGCNFCATGTMGFKS-N-LSSGEIVEQLVH-AS--RLSNIRNVVFMGMGEPLN-NYAALVEAVRIMT 93 (279)
Q Consensus 20 ~~~l~i~~~~gCNl~C~yC~~~~~~~~~-~-~~~~ei~~~i~~-~~--~~~~~~~I~fsG~GEPll-~~~~i~~~i~~~~ 93 (279)
...+++-. .-|..+|.||......... . .-.+..++++.. .. ....++.|.|-| |-|++ ..+.+.++++.++
T Consensus 6 ~~~lYiHi-PFC~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GG-GTPs~L~~~~l~~ll~~i~ 83 (353)
T PRK05904 6 TKHLYIHI-PFCQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGG-GTPNCLNDQLLDILLSTIK 83 (353)
T ss_pred eeEEEEEe-CCccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECC-CccccCCHHHHHHHHHHHH
Confidence 34455533 5699999999764321100 0 012223333332 11 113468899999 99987 4677888888887
Q ss_pred CCCCCCCCCeEEEEcCCchhh---hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCe-E
Q 023640 94 GLPFQVSPKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-I 169 (279)
Q Consensus 94 ~~g~~~~~~~v~i~TNG~~~~---~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~-v 169 (279)
+. +. ....+++.+|....+ +..+.+.+ ...+.|.+++.+++..+.+.+ ..+.+++.+++ +.+++.|.. +
T Consensus 84 ~~-~~-~~~eitiE~nP~~lt~e~l~~lk~~G-~nrisiGvQS~~d~vL~~l~R---~~~~~~~~~ai-~~lr~~G~~~v 156 (353)
T PRK05904 84 PY-VD-NNCEFTIECNPELITQSQINLLKKNK-VNRISLGVQSMNNNILKQLNR---THTIQDSKEAI-NLLHKNGIYNI 156 (353)
T ss_pred Hh-cC-CCCeEEEEeccCcCCHHHHHHHHHcC-CCEEEEecccCCHHHHHHcCC---CCCHHHHHHHH-HHHHHcCCCcE
Confidence 65 21 125789999985433 33344443 346778999999999888743 46889999999 556677754 5
Q ss_pred EEEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCc----CCCC----HHHHHHHHHHHHhcCCe
Q 023640 170 FIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQF----RTSS----DDKVSSFQKILRGSYNI 235 (279)
Q Consensus 170 ~i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~----~~~~----~e~l~~~~~~l~~~~gi 235 (279)
.+.+++ +| +++.+++.+.++++.++++. +.+.++.+. +++.+ ..++ .+.++.+.+.++ ..|+
T Consensus 157 ~~dlI~GlP--gqt~e~~~~tl~~~~~l~p~~is~y~L~~~-~gT~l~~~~~~~~~~~~~~~~~~~~~~L~-~~Gy 228 (353)
T PRK05904 157 SCDFLYCLP--ILKLKDLDEVFNFILKHKINHISFYSLEIK-EGSILKKYHYTIDEDKEAEQLNYIKAKFN-KLNY 228 (353)
T ss_pred EEEEeecCC--CCCHHHHHHHHHHHHhcCCCEEEEEeeEec-CCChHhhcCCCCChHHHHHHHHHHHHHHH-HcCC
Confidence 555544 34 46889999999999998864 666666554 22111 1122 334555566666 5565
No 124
>PRK00955 hypothetical protein; Provisional
Probab=99.07 E-value=1.1e-08 Score=98.02 Aligned_cols=199 Identities=17% Similarity=0.243 Sum_probs=120.2
Q ss_pred CCCCCccccCcc--CCCCCceEEEEeccCCcCccCccccCCCC-CC-ccCCCHHHHHHHHHHHhccCCCceE-EEecCCc
Q 023640 3 YDSSLGKYNGKP--RPGGPRSTLCISSQVGCKMGCNFCATGTM-GF-KSNLSSGEIVEQLVHASRLSNIRNV-VFMGMGE 77 (279)
Q Consensus 3 ~~~~~~~~~~~~--~p~~~~~~l~i~~~~gCNl~C~yC~~~~~-~~-~~~~~~~ei~~~i~~~~~~~~~~~I-~fsG~GE 77 (279)
|.|.---++++. +|.-......|.++.||+.+|.||..+.. +. .+..+.+++++++..+....+.+.+ +-.| |
T Consensus 272 y~r~~hp~y~~~g~ipa~~~i~~sI~i~RGC~g~CSFCaIp~~rGr~~rSRs~esIv~Evk~L~~~~gfkg~I~Dlg-G- 349 (620)
T PRK00955 272 YTRTYHPSYEEKGGIPAIEEVKFSITSHRGCFGGCSFCAITFHQGRFIQSRSQESILREAKELTEMPDFKGYIHDVG-G- 349 (620)
T ss_pred cccCcchhhccCCCCCceeeEEEEEEeeCCCCCCCCCCCeecccCCcceecCHHHHHHHHHHHHhccCCeEEEEeCC-C-
Confidence 334443444444 66644444444557999999999987543 22 2578899999999987654444433 2122 2
Q ss_pred cc--------------------------------cCHHHHHHHHHHHhCC-CCCCCCCeEEEEcC---Cch--h----hh
Q 023640 78 PL--------------------------------NNYAALVEAVRIMTGL-PFQVSPKRITVSTV---GIV--H----AI 115 (279)
Q Consensus 78 Pl--------------------------------l~~~~i~~~i~~~~~~-g~~~~~~~v~i~TN---G~~--~----~~ 115 (279)
|+ .....+.++++.+++. |+ .++.+.+. .++ . .+
T Consensus 350 ptan~Yg~~c~~~~~~~~c~~~~clfp~~c~nl~~d~~~l~~LLr~l~~l~gv----krv~isSGIR~D~l~~~~~~~~l 425 (620)
T PRK00955 350 PTANFRKMACKKQLKCGACKNKQCLFPKPCKNLDVDHKEYLELLRKVRKLPGV----KKVFIRSGIRYDYLLHDKNDEFF 425 (620)
T ss_pred CCccccccccccccccccccccccccCccccccCcChHHHHHHHHHHhccCCc----eEEEeecceeccccccCCcHHHH
Confidence 21 1234688999999886 41 34444443 011 1 13
Q ss_pred HHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEE-EEEeCCCCCcHHHHHHHHHHHh
Q 023640 116 NKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE-YIMLDGVNDEEQHAHQLGKLLE 194 (279)
Q Consensus 116 ~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~-~vv~~g~nd~~~~l~~l~~~l~ 194 (279)
+++.+.+..-.+.|.+++.+++..+...++ ....++++++.++++.++.|.+..+. ++++.--+++++++.+++++++
T Consensus 426 ~eL~~~~vsg~L~IapESgSd~VLk~M~K~-~~~~~~~f~~~~~~i~~~~G~~~~I~~yfIvGfPGETeEDf~et~eflk 504 (620)
T PRK00955 426 EELCEHHVSGQLKVAPEHISDRVLKLMGKP-SREVYDKFVKKFDRINKKLGKKQYLVPYLMSSHPGSTLEDAIELAEYTK 504 (620)
T ss_pred HHHHHHhcCCCceeCcCCCChHHHHHhCCC-CHHHHHHHHHHHHHhhhhcCCCccEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 344443322246788899888888776432 11234566666666777777653333 3333223468899999999999
Q ss_pred hCCcE-EEEEecCCC
Q 023640 195 TFQVV-VNLIPFNPI 208 (279)
Q Consensus 195 ~~~~~-i~l~~~~p~ 208 (279)
+++.. .++.+|.|.
T Consensus 505 el~~~~~qV~~fTP~ 519 (620)
T PRK00955 505 DLGYQPEQVQDFYPT 519 (620)
T ss_pred HcCCCcceeeeeecC
Confidence 99875 677777776
No 125
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.06 E-value=2.3e-08 Score=94.00 Aligned_cols=177 Identities=14% Similarity=0.265 Sum_probs=114.4
Q ss_pred eEEEEeccCCcCccCccccCCCC-CCccCCCHHHHHHHHHHHhccCCCceEEEec-----C------Ccccc-CHHHHHH
Q 023640 21 STLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMG-----M------GEPLN-NYAALVE 87 (279)
Q Consensus 21 ~~l~i~~~~gCNl~C~yC~~~~~-~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG-----~------GEPll-~~~~i~~ 87 (279)
...|+.++.|||++|.||..+.. +..+..+++++++++...... |++.|.|+| + +.|.. +...+.+
T Consensus 148 ~~a~i~i~~GC~~~CsFC~ip~~rG~~rsr~~e~V~~Ei~~l~~~-g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~ 226 (448)
T PRK14333 148 ITAWVNVIYGCNERCTYCVVPSVRGKEQSRTPEAIRAEIEELAAQ-GYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTD 226 (448)
T ss_pred eeEEEEhhcCCCCCCCCCceecccCCCcccCHHHHHHHHHHHHHC-CCcEEEEEecccchhcCCCCCccccccccccHHH
Confidence 35677778999999999987532 233567899999999987653 778888875 1 22221 1135778
Q ss_pred HHHHHhCC-CCCCCCCeEEEEc-CC--chhh-hHHHhccCC-CceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 023640 88 AVRIMTGL-PFQVSPKRITVST-VG--IVHA-INKFHSDLP-GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 161 (279)
Q Consensus 88 ~i~~~~~~-g~~~~~~~v~i~T-NG--~~~~-~~~l~~~~~-~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~ 161 (279)
+++.+.+. |+ ..+.+.+ +. ...+ ++.+++... -..+.|.+.+.+++..+.+. +..+.+.+.+.++ .
T Consensus 227 Ll~~i~~~~~~----~rir~~~~~p~~~~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~---R~~t~e~~~~~i~-~ 298 (448)
T PRK14333 227 LLYYIHDVEGI----ERIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNEILKAMA---RGYTHEKYRRIID-K 298 (448)
T ss_pred HHHHHHhcCCC----eEEEECCCChhhhhHHHHHHHhcCCcccccccCCCccCCHHHHHhcC---CCCCHHHHHHHHH-H
Confidence 88877765 31 2455532 21 1112 222222211 12355788899999888764 3468889999984 4
Q ss_pred HHhh--CCeEEEEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 162 QKNS--QQKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 162 ~~~~--~~~v~i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
+++. +..+...+++ .| +++++++++.++++.++++. +++.+|.|.
T Consensus 299 lr~~~p~i~i~~d~IvGfP--gET~edf~~tl~~l~~~~~~~~~~~~~sp~ 347 (448)
T PRK14333 299 IREYMPDASISADAIVGFP--GETEAQFENTLKLVEEIGFDQLNTAAYSPR 347 (448)
T ss_pred HHHhCCCcEEEeeEEEECC--CCCHHHHHHHHHHHHHcCCCEEeeeeeecC
Confidence 5555 3334443333 24 46889999999999999875 788888887
No 126
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=5.4e-08 Score=89.91 Aligned_cols=182 Identities=14% Similarity=0.317 Sum_probs=123.9
Q ss_pred CCceEEEEeccCCcCccCccccCCCC-CCccCCCHHHHHHHHHHHhccCCCceEEEecC-----CccccC-HHHHHHHHH
Q 023640 18 GPRSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM-----GEPLNN-YAALVEAVR 90 (279)
Q Consensus 18 ~~~~~l~i~~~~gCNl~C~yC~~~~~-~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~-----GEPll~-~~~i~~~i~ 90 (279)
......|+..+.|||.+|.||-.+.. +..+..+++++++++.++... |++.|+++|. |--+=. ...+.++++
T Consensus 141 ~~~~~A~v~I~eGCn~~CtfCiiP~~RG~~rSr~~e~Il~ev~~Lv~~-G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~ 219 (437)
T COG0621 141 EGGVRAFVKIQEGCNKFCTFCIIPYARGKERSRPPEDILKEVKRLVAQ-GVKEIVLTGQDVNAYGKDLGGGKPNLADLLR 219 (437)
T ss_pred CCCeEEEEEhhcCcCCCCCeeeeeccCCCccCCCHHHHHHHHHHHHHC-CCeEEEEEEEehhhccccCCCCccCHHHHHH
Confidence 35578888889999999999987533 345678899999999998764 8899999882 322210 123667777
Q ss_pred HHhCC-CCCCCCCeEEEEcCCchhhhHHHhcc---CCCc--eEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHh
Q 023640 91 IMTGL-PFQVSPKRITVSTVGIVHAINKFHSD---LPGL--NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 164 (279)
Q Consensus 91 ~~~~~-g~~~~~~~v~i~TNG~~~~~~~l~~~---~~~~--~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~ 164 (279)
.+.+. |. ..+.+.|-=-....+.+.+. .+.+ .+.+++.++++.+-+...+ .++-++.++-++++. +
T Consensus 220 ~l~~I~G~----~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~M~R---~yt~e~~~~~i~k~R-~ 291 (437)
T COG0621 220 ELSKIPGI----ERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMKR---GYTVEEYLEIIEKLR-A 291 (437)
T ss_pred HHhcCCCc----eEEEEecCCchhcCHHHHHHHhcCCcccccccCccccCCHHHHHHhCC---CcCHHHHHHHHHHHH-H
Confidence 77764 32 56777664322112233332 2222 3557888999998887743 477788888885543 3
Q ss_pred hCCeEEEEEEEeCC-CCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 165 SQQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 165 ~~~~v~i~~vv~~g-~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
.-..+.+.+-++-| -+.+++++++..+++++.++. ++..+|.|-
T Consensus 292 ~~Pd~~i~tDiIVGFPgETeedFe~tl~lv~e~~fd~~~~F~YSpR 337 (437)
T COG0621 292 ARPDIAISTDIIVGFPGETEEDFEETLDLVEEVRFDRLHVFKYSPR 337 (437)
T ss_pred hCCCceEeccEEEECCCCCHHHHHHHHHHHHHhCCCEEeeeecCCC
Confidence 44456666555433 245789999999999999875 888899886
No 127
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=99.02 E-value=1.3e-07 Score=87.35 Aligned_cols=176 Identities=12% Similarity=0.163 Sum_probs=110.8
Q ss_pred eEEEEeccCCcCccCccccCCCCCCccCCCHHHHH----HHHHHHhc---cCCCceEEEecCCcccc-CHHHHHHHHHHH
Q 023640 21 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIV----EQLVHASR---LSNIRNVVFMGMGEPLN-NYAALVEAVRIM 92 (279)
Q Consensus 21 ~~l~i~~~~gCNl~C~yC~~~~~~~~~~~~~~ei~----~~i~~~~~---~~~~~~I~fsG~GEPll-~~~~i~~~i~~~ 92 (279)
..+|+-. .-|..+|.||......... ...+..+ +++..... ...++.|.|.| |.|++ .++.+.++++.+
T Consensus 12 ~~lYiHi-PFC~~~C~yC~f~~~~~~~-~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GG-GTPs~l~~~~l~~ll~~i 88 (390)
T PRK06582 12 LSIYIHW-PFCLSKCPYCDFNSHVAST-IDHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGG-GTPSLMNPVIVEGIINKI 88 (390)
T ss_pred eEEEEEe-CCCcCcCCCCCCeeccCCC-CCHHHHHHHHHHHHHHHHHHccCCceeEEEECC-CccccCCHHHHHHHHHHH
Confidence 4555543 7899999999763321111 1223333 33332221 12478999999 99955 567788888888
Q ss_pred hCC-CCCCCCCeEEEEcCCchhh---hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCe
Q 023640 93 TGL-PFQVSPKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 168 (279)
Q Consensus 93 ~~~-g~~~~~~~v~i~TNG~~~~---~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~ 168 (279)
++. ++. ....+++.+|....+ +..+.+.+ ...+.|.+.+.+++..+.+. +..+.++++++++ .+++....
T Consensus 89 ~~~~~~~-~~~eitiE~nP~~~~~e~l~~l~~~G-vnRiSiGvQS~~d~~L~~lg---R~h~~~~~~~ai~-~~~~~~~~ 162 (390)
T PRK06582 89 SNLAIID-NQTEITLETNPTSFETEKFKAFKLAG-INRVSIGVQSLKEDDLKKLG---RTHDCMQAIKTIE-AANTIFPR 162 (390)
T ss_pred HHhCCCC-CCCEEEEEeCCCcCCHHHHHHHHHCC-CCEEEEECCcCCHHHHHHcC---CCCCHHHHHHHHH-HHHHhCCc
Confidence 874 211 125799999995432 33344443 34577888999998888763 3467899999994 45555555
Q ss_pred EEEEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCC
Q 023640 169 IFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNP 207 (279)
Q Consensus 169 v~i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p 207 (279)
+.+..+. +|| .+.+++.+-++.+.++++. +.+.++..
T Consensus 163 v~~DlI~GlPg--qt~e~~~~~l~~~~~l~p~his~y~L~i 201 (390)
T PRK06582 163 VSFDLIYARSG--QTLKDWQEELKQAMQLATSHISLYQLTI 201 (390)
T ss_pred EEEEeecCCCC--CCHHHHHHHHHHHHhcCCCEEEEecCEE
Confidence 6665554 454 4667777777777777764 66655543
No 128
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=99.01 E-value=1.1e-07 Score=88.08 Aligned_cols=178 Identities=10% Similarity=0.114 Sum_probs=115.8
Q ss_pred eEEEEeccCCcCccCccccCCCCCC-----cc-CCCHH----HHHHHHHHHhc-cCCCceEEEecCCcccc-CHHHHHHH
Q 023640 21 STLCISSQVGCKMGCNFCATGTMGF-----KS-NLSSG----EIVEQLVHASR-LSNIRNVVFMGMGEPLN-NYAALVEA 88 (279)
Q Consensus 21 ~~l~i~~~~gCNl~C~yC~~~~~~~-----~~-~~~~~----ei~~~i~~~~~-~~~~~~I~fsG~GEPll-~~~~i~~~ 88 (279)
..+|+-. .-|..+|.||....... .. ....+ .+.+++..... ...++.|.|.| |.|++ .++.+.++
T Consensus 11 ~~lYiHi-PFC~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GG-GTps~l~~~~l~~l 88 (400)
T PRK07379 11 TSAYIHI-PFCRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGG-GTPSLLSVEQLERI 88 (400)
T ss_pred cEEEEEe-ccccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECC-CccccCCHHHHHHH
Confidence 3566643 67999999997632111 01 11122 33344433221 23578999999 99995 57889999
Q ss_pred HHHHhCCCCCCC-CCeEEEEcCCchh--h-hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHh
Q 023640 89 VRIMTGLPFQVS-PKRITVSTVGIVH--A-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 164 (279)
Q Consensus 89 i~~~~~~g~~~~-~~~v~i~TNG~~~--~-~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~ 164 (279)
++.+++. +++. ...+++.+|--.. + +..+.+.+ ...+.|.+.+.+++..+.+. +..+.+++.+++ +.+++
T Consensus 89 l~~i~~~-~~~~~~~eit~E~~P~~lt~e~l~~l~~~G-vnrislGvQS~~d~~L~~l~---R~~~~~~~~~ai-~~l~~ 162 (400)
T PRK07379 89 LTTLDQR-FGIAPDAEISLEIDPGTFDLEQLQGYRSLG-VNRVSLGVQAFQDELLALCG---RSHRVKDIFAAV-DLIHQ 162 (400)
T ss_pred HHHHHHh-CCCCCCCEEEEEeCCCcCCHHHHHHHHHCC-CCEEEEEcccCCHHHHHHhC---CCCCHHHHHHHH-HHHHH
Confidence 9988865 2221 2478888774222 2 33444443 34677888999999988884 346889999999 56777
Q ss_pred hCCe-EEEEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 165 SQQK-IFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 165 ~~~~-v~i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
.|.. +.+..++ +|| ++.+++.+-++++.++++. +.+.++.+.
T Consensus 163 ~G~~~v~~dlI~GlPg--qt~e~~~~tl~~~~~l~p~~is~y~L~~~ 207 (400)
T PRK07379 163 AGIENFSLDLISGLPH--QTLEDWQASLEAAIALNPTHLSCYDLVLE 207 (400)
T ss_pred cCCCeEEEEeecCCCC--CCHHHHHHHHHHHHcCCCCEEEEecceec
Confidence 7765 5555444 344 6888999999999888864 666665544
No 129
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=99.01 E-value=9.5e-08 Score=87.65 Aligned_cols=174 Identities=14% Similarity=0.136 Sum_probs=113.0
Q ss_pred eEEEEeccCCcCccCccccCCCCCCccCCCHH----HHHHH-HHHHhc---cCCCceEEEecCCccccC-HHHHHHHHHH
Q 023640 21 STLCISSQVGCKMGCNFCATGTMGFKSNLSSG----EIVEQ-LVHASR---LSNIRNVVFMGMGEPLNN-YAALVEAVRI 91 (279)
Q Consensus 21 ~~l~i~~~~gCNl~C~yC~~~~~~~~~~~~~~----ei~~~-i~~~~~---~~~~~~I~fsG~GEPll~-~~~i~~~i~~ 91 (279)
..+|+-. .-|..+|.||....... .....+ .++++ +..... ...++.|.|.| |.|++. ++.+.++++.
T Consensus 7 ~~lYiHI-PFC~~~C~yC~f~~~~~-~~~~~~~y~~~l~~E~~~~~~~~~~~~~i~~iy~GG-GTPs~l~~~~l~~ll~~ 83 (370)
T PRK06294 7 LALYIHI-PFCTKKCHYCSFYTIPY-KEESVSLYCNAVLKEGLKKLAPLRCSHFIDTVFFGG-GTPSLVPPALIQDILKT 83 (370)
T ss_pred eEEEEEe-CCccCcCCCCcCcccCC-CccCHHHHHHHHHHHHHHHhhhhccCCceeEEEECC-CccccCCHHHHHHHHHH
Confidence 3555543 67999999996533211 111222 23333 221111 12467899999 999986 5678888888
Q ss_pred HhCCCCCCCCCeEEEEcCCchhh---hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCe
Q 023640 92 MTGLPFQVSPKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 168 (279)
Q Consensus 92 ~~~~g~~~~~~~v~i~TNG~~~~---~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~ 168 (279)
+++.. ...+++.+|.-..+ +..+.+.+ ...+.|.+++.+++..+.+.+ ..+.+.+++++ +.+++.|..
T Consensus 84 i~~~~----~~eit~E~~P~~~~~~~l~~l~~~G-~nrislGvQS~~~~~L~~l~R---~~~~~~~~~ai-~~~~~~g~~ 154 (370)
T PRK06294 84 LEAPH----ATEITLEANPENLSESYIRALALTG-INRISIGVQTFDDPLLKLLGR---THSSSKAIDAV-QECSEHGFS 154 (370)
T ss_pred HHhCC----CCeEEEEeCCCCCCHHHHHHHHHCC-CCEEEEccccCCHHHHHHcCC---CCCHHHHHHHH-HHHHHcCCC
Confidence 87642 26788999974332 33344443 346778889999998888743 46788999999 566777764
Q ss_pred -EEEEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 169 -IFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 169 -v~i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
+.+..+. +| .++.+++.+-++.+.++++. +.+.++.+.
T Consensus 155 ~v~~Dli~GlP--gqt~~~~~~~l~~~~~l~~~~is~y~l~~~ 195 (370)
T PRK06294 155 NLSIDLIYGLP--TQSLSDFIVDLHQAITLPITHISLYNLTID 195 (370)
T ss_pred eEEEEeecCCC--CCCHHHHHHHHHHHHccCCCeEEEeeeEec
Confidence 5555443 34 46788999999999888864 666665544
No 130
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=99.01 E-value=1.8e-07 Score=86.17 Aligned_cols=203 Identities=11% Similarity=0.132 Sum_probs=124.5
Q ss_pred eEEEEeccCCcCccCccccCCCCCCccCCC----HHHHHHHHHHHhc---cCCCceEEEecCCccccC-HHHHHHHHHHH
Q 023640 21 STLCISSQVGCKMGCNFCATGTMGFKSNLS----SGEIVEQLVHASR---LSNIRNVVFMGMGEPLNN-YAALVEAVRIM 92 (279)
Q Consensus 21 ~~l~i~~~~gCNl~C~yC~~~~~~~~~~~~----~~ei~~~i~~~~~---~~~~~~I~fsG~GEPll~-~~~i~~~i~~~ 92 (279)
..+|+-. .-|..+|.||......... .. .+.+.+++..... ...+..|.|.| |-|++- ++.+.++++.+
T Consensus 5 ~~lYiHI-PFC~~kC~yC~f~~~~~~~-~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GG-GTPs~l~~~~L~~ll~~i 81 (380)
T PRK09057 5 FGLYVHW-PFCLAKCPYCDFNSHVRHA-IDQARFAAAFLRELATEAARTGPRTLTSIFFGG-GTPSLMQPETVAALLDAI 81 (380)
T ss_pred eEEEEEe-CCcCCcCCCCCCcccCcCc-CCHHHHHHHHHHHHHHHHHHcCCCCcCeEEeCC-CccccCCHHHHHHHHHHH
Confidence 3555543 6799999999764321111 22 2334444443222 12578999999 999975 56788999988
Q ss_pred hCCCCCC-CCCeEEEEcCCchhh---hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCe
Q 023640 93 TGLPFQV-SPKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 168 (279)
Q Consensus 93 ~~~g~~~-~~~~v~i~TNG~~~~---~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~ 168 (279)
++. +.+ ....+++.+|--... +..+.+.+ ...+.|.+.+.+++..+.+. +..+.+.+.+++ +.+++.+..
T Consensus 82 ~~~-f~~~~~~eit~E~~P~~i~~e~L~~l~~~G-vnrislGvQS~~d~vL~~l~---R~~~~~~~~~ai-~~~~~~~~~ 155 (380)
T PRK09057 82 ARL-WPVADDIEITLEANPTSVEAGRFRGYRAAG-VNRVSLGVQALNDADLRFLG---RLHSVAEALAAI-DLAREIFPR 155 (380)
T ss_pred HHh-CCCCCCccEEEEECcCcCCHHHHHHHHHcC-CCEEEEecccCCHHHHHHcC---CCCCHHHHHHHH-HHHHHhCcc
Confidence 875 222 124688888874322 44444543 34577888999999888774 346789999999 455666655
Q ss_pred EEEEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCC--------CCCCcCCCCHH----HHHHHHHHHHhcCC
Q 023640 169 IFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG--------SVSQFRTSSDD----KVSSFQKILRGSYN 234 (279)
Q Consensus 169 v~i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~--------~~~~~~~~~~e----~l~~~~~~l~~~~g 234 (279)
+.+..+. +| .++.+++.+-++.+.++++. +.+.++.+.. ....+..++.+ .++.+.+.|+ ..|
T Consensus 156 v~~dli~GlP--gqt~~~~~~~l~~~~~l~p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~-~~G 232 (380)
T PRK09057 156 VSFDLIYARP--GQTLAAWRAELKEALSLAADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITA-AAG 232 (380)
T ss_pred EEEEeecCCC--CCCHHHHHHHHHHHHhcCCCeEEeecceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHH-HcC
Confidence 6655544 34 45677777766666677664 6666665541 01123345554 3445555666 556
Q ss_pred e
Q 023640 235 I 235 (279)
Q Consensus 235 i 235 (279)
+
T Consensus 233 ~ 233 (380)
T PRK09057 233 L 233 (380)
T ss_pred C
Confidence 5
No 131
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.00 E-value=1.7e-07 Score=87.80 Aligned_cols=208 Identities=15% Similarity=0.169 Sum_probs=133.0
Q ss_pred ccCCcCccCccccCCCC-C--CccCCCHHHHHHHHHHHhccCCCceEEEecCCc--cccCHHHHHHHHHHHhCCCCCCCC
Q 023640 27 SQVGCKMGCNFCATGTM-G--FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE--PLNNYAALVEAVRIMTGLPFQVSP 101 (279)
Q Consensus 27 ~~~gCNl~C~yC~~~~~-~--~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GE--Pll~~~~i~~~i~~~~~~g~~~~~ 101 (279)
.++.|.-+|.||..... . ....++++++.+.+..+.. .|++.+.+.+ || |-...+.+.++++.+++.......
T Consensus 90 iSN~C~n~C~YCgfs~~n~~i~r~~Ls~EEI~~ea~~~~~-~G~~~i~Lvs-Ge~p~~~~~eyi~e~i~~I~~~~~~~g~ 167 (469)
T PRK09613 90 ISNYCVNNCVYCGFRRSNKEIKRKKLTQEEIREEVKALED-MGHKRLALVA-GEDPPNCDIEYILESIKTIYSTKHGNGE 167 (469)
T ss_pred ccCCCCCCCccCCCccCCCCCCceECCHHHHHHHHHHHHH-CCCCEEEEEe-CCCCCCCCHHHHHHHHHHHHHhccccCc
Confidence 46899999999966321 1 2246899999999998775 4788888877 66 333478899999998863100000
Q ss_pred -CeEEEEcCCc-hhhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCe-EEEEEEEeCC
Q 023640 102 -KRITVSTVGI-VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDG 178 (279)
Q Consensus 102 -~~v~i~TNG~-~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~-v~i~~vv~~g 178 (279)
..+.+.---+ ....++|++.+ ...+.+-..+.+.+++..+.+...+.+++.-++++ +.+.++|.+ +.+=. +=|
T Consensus 168 i~~v~inig~lt~eey~~LkeaG-v~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~-~rA~~aGi~~Vg~G~--L~G 243 (469)
T PRK09613 168 IRRVNVNIAPTTVENYKKLKEAG-IGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAM-DRAMEAGIDDVGIGV--LFG 243 (469)
T ss_pred ceeeEEEeecCCHHHHHHHHHcC-CCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHH-HHHHHcCCCeeCeEE--EEc
Confidence 1333332111 12245566654 23455666777889999887755667899999999 456678876 55433 336
Q ss_pred CCCcHHHHHHHHHHHhhC----C--cE-EEEEecCCCCCCCCc---C-CCCHHHHHHHHHHHHh---cCCeEEEecc
Q 023640 179 VNDEEQHAHQLGKLLETF----Q--VV-VNLIPFNPIGSVSQF---R-TSSDDKVSSFQKILRG---SYNIRTTVRK 241 (279)
Q Consensus 179 ~nd~~~~l~~l~~~l~~~----~--~~-i~l~~~~p~~~~~~~---~-~~~~e~l~~~~~~l~~---~~gi~v~vr~ 241 (279)
+.++..+...++..+..+ + ++ +.+-.+.|. +++++ + +.+++++.++...++- ..|+.++-|.
T Consensus 244 Lge~~~E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~-~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~~I~lStRE 319 (469)
T PRK09613 244 LYDYKFEVLGLLMHAEHLEERFGVGPHTISVPRLRPA-DGSDLENFPYLVSDEDFKKIVAILRLAVPYTGMILSTRE 319 (469)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhCCCCccccccceecC-CCCCcccCCCCCCHHHHHHHHHHHHHHCCCCCceeecCC
Confidence 777877777777666555 3 33 333335665 34433 2 3588888888776652 3566666665
No 132
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=98.98 E-value=1.4e-07 Score=88.12 Aligned_cols=181 Identities=12% Similarity=0.162 Sum_probs=113.6
Q ss_pred CCceEEEEeccCCcCccCccccCCCCCCccCC---CHHHHHHHHHHHhcc-CCCceEEEecCCccccCHHHHHHHHHHHh
Q 023640 18 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNL---SSGEIVEQLVHASRL-SNIRNVVFMGMGEPLNNYAALVEAVRIMT 93 (279)
Q Consensus 18 ~~~~~l~i~~~~gCNl~C~yC~~~~~~~~~~~---~~~ei~~~i~~~~~~-~~~~~I~fsG~GEPll~~~~i~~~i~~~~ 93 (279)
.....+++-. .-|+.+|.||........... -.+.+.+++...... ..+..|.|.| |-|++.++.+.++++.++
T Consensus 50 ~~~~~LYvHI-PFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~siy~GG-GTPs~l~~~L~~ll~~i~ 127 (433)
T PRK08629 50 GKKYMLYAHV-PFCHTLCPYCSFHRFYFKEDKARAYFISLRKEMEMVKELGYDFESMYVGG-GTTTILEDELAKTLELAK 127 (433)
T ss_pred CCcEEEEEEe-CCccCcCCCCCCcCcCCCcchHHHHHHHHHHHHHHHHhcCCceEEEEECC-CccccCHHHHHHHHHHHH
Confidence 3455777754 669999999976432211111 134555555543321 2467899999 999998888888998888
Q ss_pred CCCCCCCCCeEEEEcCCchhh---hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEE
Q 023640 94 GLPFQVSPKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 170 (279)
Q Consensus 94 ~~g~~~~~~~v~i~TNG~~~~---~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~ 170 (279)
+. +.+ ..+++.+|--..+ +..+.+ . ...+.|.+.+.++++.+.+.+..+..+.+.+++.++. ++.....+.
T Consensus 128 ~~-f~i--~eis~E~~P~~lt~e~L~~l~~-~-vnrlsiGVQS~~d~vLk~~gR~h~~~~~~~~~~~l~~-~~~~~~~v~ 201 (433)
T PRK08629 128 KL-FSI--KEVSCESDPNHLDPPKLKQLKG-L-IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMK-AKGLFPIIN 201 (433)
T ss_pred Hh-CCC--ceEEEEeCcccCCHHHHHHHHH-h-CCeEEEecCcCCHHHHHHcCCCCChhHHHHHHHHHHH-HhccCCeEE
Confidence 76 222 3678778774322 222333 2 2346677889999988887544333345666666633 222233344
Q ss_pred EEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 171 IEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 171 i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
+..++ +| +++.+++.+-++++.++++. +.+.|+...
T Consensus 202 ~DlI~GlP--gqT~e~~~~~l~~~~~l~p~~is~y~L~~~ 239 (433)
T PRK08629 202 VDLIFNFP--GQTDEVLQHDLDIAKRLDPRQITTYPLMKS 239 (433)
T ss_pred EEEEccCC--CCCHHHHHHHHHHHHhCCCCEEEEccceec
Confidence 44433 34 46788999999999998875 777776543
No 133
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=98.96 E-value=4.1e-07 Score=84.19 Aligned_cols=180 Identities=13% Similarity=0.138 Sum_probs=114.5
Q ss_pred CceEEEEeccCCcCccCccccCCCCCCcc--CCCHHH----HHHHHHHHhc---cCCCceEEEecCCccccC-HHHHHHH
Q 023640 19 PRSTLCISSQVGCKMGCNFCATGTMGFKS--NLSSGE----IVEQLVHASR---LSNIRNVVFMGMGEPLNN-YAALVEA 88 (279)
Q Consensus 19 ~~~~l~i~~~~gCNl~C~yC~~~~~~~~~--~~~~~e----i~~~i~~~~~---~~~~~~I~fsG~GEPll~-~~~i~~~ 88 (279)
....+|+-. .-|..+|.||......... ....++ +.+++..... ...++.|.|.| |.|++- .+.+.++
T Consensus 18 ~~~~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GG-GTPs~L~~~~L~~l 95 (394)
T PRK08898 18 PPLSLYVHF-PWCVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGG-GTPSLLSAAGLDRL 95 (394)
T ss_pred CCeEEEEEe-CCccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECC-CCcCCCCHHHHHHH
Confidence 344666653 6799999999753321111 122233 3344432221 12478999999 999974 6788899
Q ss_pred HHHHhCCCCCC-CCCeEEEEcCCchh---hhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHh
Q 023640 89 VRIMTGLPFQV-SPKRITVSTVGIVH---AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 164 (279)
Q Consensus 89 i~~~~~~g~~~-~~~~v~i~TNG~~~---~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~ 164 (279)
++.+++. +.+ ....+++.+|--.. .+..+.+.+ ...+.|.+.+.+++..+.+.+ ..+.+.+.++++ .+++
T Consensus 96 l~~i~~~-~~~~~~~eit~E~~p~~~~~e~L~~l~~~G-vnrisiGvQS~~~~~L~~l~R---~~~~~~~~~~i~-~~~~ 169 (394)
T PRK08898 96 LSDVRAL-LPLDPDAEITLEANPGTFEAEKFAQFRASG-VNRLSIGIQSFNDAHLKALGR---IHDGAEARAAIE-IAAK 169 (394)
T ss_pred HHHHHHh-CCCCCCCeEEEEECCCCCCHHHHHHHHHcC-CCeEEEecccCCHHHHHHhCC---CCCHHHHHHHHH-HHHH
Confidence 9888875 222 12578888886322 244455543 345778889999999887743 356788888884 4455
Q ss_pred hCCeEEEEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 165 SQQKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 165 ~~~~v~i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
.+..+.+..++ +| +++.+++.+-++.+.++++. +.+.++.+.
T Consensus 170 ~~~~v~~dlI~GlP--gqt~~~~~~~l~~~~~l~p~~is~y~l~~~ 213 (394)
T PRK08898 170 HFDNFNLDLMYALP--GQTLDEALADVETALAFGPPHLSLYHLTLE 213 (394)
T ss_pred hCCceEEEEEcCCC--CCCHHHHHHHHHHHHhcCCCEEEEeeeEEC
Confidence 55556555444 33 56788888888888888764 666666554
No 134
>PRK08444 hypothetical protein; Provisional
Probab=98.96 E-value=8.1e-08 Score=87.22 Aligned_cols=196 Identities=16% Similarity=0.161 Sum_probs=122.9
Q ss_pred EeccCCcCccCccccCCCC---CCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCC
Q 023640 25 ISSQVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSP 101 (279)
Q Consensus 25 i~~~~gCNl~C~yC~~~~~---~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~ 101 (279)
++.|+.|..+|.||..... .....++++++++.+.+... .|+..|.++|-+-|-...+.+.++++.+++. ++.
T Consensus 53 In~TN~C~~~C~FCaf~~~~~~~~~y~ls~eeI~~~a~~a~~-~G~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~---~p~ 128 (353)
T PRK08444 53 INPTNICADVCKFCAFSAHRKNPNPYTMSHEEILEIVKNSVK-RGIKEVHIVSAHNPNYGYEWYLEIFKKIKEA---YPN 128 (353)
T ss_pred cccccccccCCccCCCccCCCCCccccCCHHHHHHHHHHHHH-CCCCEEEEeccCCCCCCHHHHHHHHHHHHHH---CCC
Confidence 5678999999999976421 11235899999999998775 4788899888345666678889999999975 122
Q ss_pred CeEEEEc----------CCchh-h-hHHHhccCCCceEEE-EeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCe
Q 023640 102 KRITVST----------VGIVH-A-INKFHSDLPGLNLAV-SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 168 (279)
Q Consensus 102 ~~v~i~T----------NG~~~-~-~~~l~~~~~~~~i~i-Sld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~ 168 (279)
+++...| .|... + +.+|++.+. ..+-- +.+-.+++.+..+.+. +.+.++.++-+ +.+++.|.+
T Consensus 129 i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl-~~~~g~~aEi~~~~vr~~I~p~--k~~~~~~~~i~-~~a~~~Gi~ 204 (353)
T PRK08444 129 LHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGV-DSMPGGGAEIFDEEVRKKICKG--KVSSERWLEIH-KYWHKKGKM 204 (353)
T ss_pred ceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCc-ccCCCCCchhcCHHHHhhhCCC--CCCHHHHHHHH-HHHHHcCCC
Confidence 5565432 22221 1 334444431 11110 1222356777888753 35667777776 556778877
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EE---EE--ecCCCC-CCCCcCCCCHHHHHHHHHHHH
Q 023640 169 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VN---LI--PFNPIG-SVSQFRTSSDDKVSSFQKILR 230 (279)
Q Consensus 169 v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~---l~--~~~p~~-~~~~~~~~~~e~l~~~~~~l~ 230 (279)
+. ..++=|..++.++..+.+..+++++.. .. ++ +|.|.+ +....+.++.++..+...+.+
T Consensus 205 ~~--sg~l~G~gEt~edrv~hl~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~iAi~R 271 (353)
T PRK08444 205 SN--ATMLFGHIENREHRIDHMLRLRDLQDKTGGFNAFIPLVYQRENNYLKVEKFPSSQEILKTIAISR 271 (353)
T ss_pred cc--ceeEEecCCCHHHHHHHHHHHHHhccccCCceEEEecccCCCCCcCCCCCCCCHHHHHHHHHHHH
Confidence 65 343446677888888888888887653 22 22 344432 222345577888777766554
No 135
>PRK05927 hypothetical protein; Provisional
Probab=98.95 E-value=5.1e-08 Score=88.47 Aligned_cols=194 Identities=16% Similarity=0.131 Sum_probs=120.1
Q ss_pred eccCCcCccCccccCCCCC---CccCCCHHHHHHHHHHHhccCCCceEEEecCCcc-ccCHHHHHHHHHHHhCCCCCCCC
Q 023640 26 SSQVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEP-LNNYAALVEAVRIMTGLPFQVSP 101 (279)
Q Consensus 26 ~~~~gCNl~C~yC~~~~~~---~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEP-ll~~~~i~~~i~~~~~~g~~~~~ 101 (279)
..|+.|+.+|.||+..... ....++++++++.+.+... .|+..|.|+| |+. -.-.+.+.++++.+|+.- +.
T Consensus 50 ~~Tn~C~~~C~fCaf~~~~~~~~~y~ls~eei~~~a~~~~~-~G~~~i~i~g-G~~p~~~~e~~~~~i~~ik~~~---p~ 124 (350)
T PRK05927 50 NYTNICKIDCTFCAFYRKPHSSDAYLLSFDEFRSLMQRYVS-AGVKTVLLQG-GVHPQLGIDYLEELVRITVKEF---PS 124 (350)
T ss_pred ccchhhhcCCccCCccCCCCCccccccCHHHHHHHHHHHHH-CCCCEEEEeC-CCCCCCCHHHHHHHHHHHHHHC---CC
Confidence 3478999999999874321 1236899999999998776 3788999999 984 455778899999999751 11
Q ss_pred CeEE----------EEcCCchhh--hHHHhccCCCceE-EEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCe
Q 023640 102 KRIT----------VSTVGIVHA--INKFHSDLPGLNL-AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 168 (279)
Q Consensus 102 ~~v~----------i~TNG~~~~--~~~l~~~~~~~~i-~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~ 168 (279)
+++. -.+.|.... ..+|.+.+. ..+ .-.++..++..++.+.+. +.+.++=++.+ +.+++.|.+
T Consensus 125 l~~~~~s~~ei~~~~~~~G~~~~e~l~~Lk~aGl-~~l~g~~~Et~~~~~~~~~~p~--k~~~~~rl~~i-~~A~~lGi~ 200 (350)
T PRK05927 125 LHPHFFSAVEIAHAAQVSGISTEQALERLWDAGQ-RTIPGGGAEILSERVRKIISPK--KMGPDGWIQFH-KLAHRLGFR 200 (350)
T ss_pred CcccCCCHHHHHHHHHhcCCCHHHHHHHHHHcCc-ccCCCCCchhCCHHHhhccCCC--CCCHHHHHHHH-HHHHHcCCC
Confidence 2221 123465432 344555432 111 123444556666666543 34568888888 567777876
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE----EEEEecCCCCCCCCc----C-CCCHHHHHHHHHHHH
Q 023640 169 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVV----VNLIPFNPIGSVSQF----R-TSSDDKVSSFQKILR 230 (279)
Q Consensus 169 v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~----i~l~~~~p~~~~~~~----~-~~~~e~l~~~~~~l~ 230 (279)
+.- .++=|+.++.++..+.+..+++++-. ..++|+.+....+.+ . +++.++..+.....+
T Consensus 201 ~~s--g~l~G~gEt~e~ri~~l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~R 269 (350)
T PRK05927 201 STA--TMMFGHVESPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALGRRVPHQASPELYYRILAVAR 269 (350)
T ss_pred cCc--eeEEeeCCCHHHHHHHHHHHHHhhHhhCCeeeeeecCcCCCCCccccCCCCCCCHHHHHHHHHHHH
Confidence 653 33336677888888888888877532 334454222122221 1 477888777766554
No 136
>PRK01254 hypothetical protein; Provisional
Probab=98.94 E-value=1.6e-07 Score=89.85 Aligned_cols=201 Identities=13% Similarity=0.227 Sum_probs=125.8
Q ss_pred CCCCCccccCcc-CCCCCceEEEEeccCCcCccCccccCCCCC-C-ccCCCHHHHHHHHHHHhc-cCCCceEE-------
Q 023640 3 YDSSLGKYNGKP-RPGGPRSTLCISSQVGCKMGCNFCATGTMG-F-KSNLSSGEIVEQLVHASR-LSNIRNVV------- 71 (279)
Q Consensus 3 ~~~~~~~~~~~~-~p~~~~~~l~i~~~~gCNl~C~yC~~~~~~-~-~~~~~~~ei~~~i~~~~~-~~~~~~I~------- 71 (279)
|.|+-=-++++. +|.-.-...+|.+..||+.+|.||..+... . ....+.+++++++..+.. ..+++.+.
T Consensus 353 y~R~~HP~Y~~~~ipA~e~i~~sV~i~RGC~g~CSFCaI~~hqGr~irSRS~esIL~Ea~~L~~~~pGfKgii~DLgGpt 432 (707)
T PRK01254 353 YARVPHPAYGKARIPAYDMIRFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEESIINEIEAIRDKVPGFTGVISDLGGPT 432 (707)
T ss_pred cccccCcccccCCCCchhheEEEEEEccCCCCCCCccccccccCCeeeeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCc
Confidence 445554556665 888655556666679999999999885432 2 356789999999998764 34666665
Q ss_pred --EecC--Cc------------------ccc--CHHHHHHHHHHHhCC-CCCCCCCeEEEEcCC---ch---hh-hHHHh
Q 023640 72 --FMGM--GE------------------PLN--NYAALVEAVRIMTGL-PFQVSPKRITVSTVG---IV---HA-INKFH 119 (279)
Q Consensus 72 --fsG~--GE------------------Pll--~~~~i~~~i~~~~~~-g~~~~~~~v~i~TNG---~~---~~-~~~l~ 119 (279)
+.|. .+ +-+ ++..+.++++.+++. |+ .++.+.+.= +. .+ ++.+.
T Consensus 433 aN~YG~~c~d~~~~~~C~~~~Cl~P~~C~nL~~dh~~l~eLLrkLr~IpGV----KkVrI~SgiR~Dl~l~d~elIeel~ 508 (707)
T PRK01254 433 ANMYRLRCKSPRAEQTCRRLSCVYPDICPHLDTDHEPTINLYRRARDLKGI----KKILIASGVRYDLAVEDPRYVKELV 508 (707)
T ss_pred cccccccccccccccccccccccCcccccccCCCHHHHHHHHHHHHhCCCc----eEEEEEcCCCccccccCHHHHHHHH
Confidence 3331 02 112 235688999999875 52 355555431 11 11 23333
Q ss_pred ccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCC-CCCcHHHHHHHHHHHhhCCc
Q 023640 120 SDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQV 198 (279)
Q Consensus 120 ~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g-~nd~~~~l~~l~~~l~~~~~ 198 (279)
+....-.+.|-+.+.+++.-+...++ ....++++.+.++++.++.+.+..+...++-| -+++++++.++++|++++++
T Consensus 509 ~~hV~g~LkVppEH~Sd~VLk~M~Kp-~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~f 587 (707)
T PRK01254 509 THHVGGYLKIAPEHTEEGPLSKMMKP-GMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRF 587 (707)
T ss_pred HhCCccccccccccCCHHHHHHhCCC-CcccHHHHHHHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhCC
Confidence 32211134466778888877765432 22567888888877777777665554333323 45688999999999999987
Q ss_pred E-EEEEecCCC
Q 023640 199 V-VNLIPFNPI 208 (279)
Q Consensus 199 ~-i~l~~~~p~ 208 (279)
. -++..|.|.
T Consensus 588 ~~eQVQ~FTPt 598 (707)
T PRK01254 588 RLDQVQNFYPS 598 (707)
T ss_pred CcceeeeeecC
Confidence 5 333445554
No 137
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=98.93 E-value=3.8e-07 Score=85.76 Aligned_cols=179 Identities=16% Similarity=0.202 Sum_probs=118.1
Q ss_pred ceEEEEeccCCcCccCccccCCCCCCcc---CCCHHHHHHHHHHHhc-----cCCCceEEEecCCcccc-CHHHHHHHHH
Q 023640 20 RSTLCISSQVGCKMGCNFCATGTMGFKS---NLSSGEIVEQLVHASR-----LSNIRNVVFMGMGEPLN-NYAALVEAVR 90 (279)
Q Consensus 20 ~~~l~i~~~~gCNl~C~yC~~~~~~~~~---~~~~~ei~~~i~~~~~-----~~~~~~I~fsG~GEPll-~~~~i~~~i~ 90 (279)
...+||-. .-|+.+|.||......... ..-.+.+++++..... ...++.|.|-| |-|++ ..+.+.++++
T Consensus 61 ~~~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GG-GTPs~L~~~~l~~ll~ 138 (449)
T PRK09058 61 KRLLYIHI-PFCRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGG-GTPTALSAEDLARLIT 138 (449)
T ss_pred ceEEEEEe-CCcCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECC-CccccCCHHHHHHHHH
Confidence 55677754 6699999999754321111 1123445555554332 12468899999 99996 5678888888
Q ss_pred HHhCC-CCCCCCCeEEEEcCCchhh---hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhC
Q 023640 91 IMTGL-PFQVSPKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 166 (279)
Q Consensus 91 ~~~~~-g~~~~~~~v~i~TNG~~~~---~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~ 166 (279)
.+++. ++. ....+++.+|-...+ +..+.+.+ ...+.|.+.+.+++..+.+.+ ..+.+.+++++ +.+++.|
T Consensus 139 ~i~~~~~l~-~~~eitiE~~p~~~t~e~l~~l~~aG-vnRiSiGVQSf~d~vLk~lgR---~~~~~~~~~~i-~~l~~~g 212 (449)
T PRK09058 139 ALREYLPLA-PDCEITLEGRINGFDDEKADAALDAG-ANRFSIGVQSFNTQVRRRAGR---KDDREEVLARL-EELVARD 212 (449)
T ss_pred HHHHhCCCC-CCCEEEEEeCcCcCCHHHHHHHHHcC-CCEEEecCCcCCHHHHHHhCC---CCCHHHHHHHH-HHHHhCC
Confidence 88775 211 125788888763222 33344443 345778889999998888743 46788999999 4555666
Q ss_pred -CeEEEEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 167 -QKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 167 -~~v~i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
..+.+..++ +| +++.+++.+-++++.++++. +.+.++.+.
T Consensus 213 ~~~v~~DlI~GlP--gqT~e~~~~~l~~~~~l~~~~is~y~L~~~ 255 (449)
T PRK09058 213 RAAVVCDLIFGLP--GQTPEIWQQDLAIVRDLGLDGVDLYALNLL 255 (449)
T ss_pred CCcEEEEEEeeCC--CCCHHHHHHHHHHHHhcCCCEEEEeccccC
Confidence 566666554 45 46788899989998888875 777666655
No 138
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=98.88 E-value=3.9e-07 Score=81.17 Aligned_cols=189 Identities=16% Similarity=0.220 Sum_probs=129.5
Q ss_pred EEEEeccCCcCccCccccCCC-C----CCccCCCHHHHHHHHHHHhccCC-CceEEEecCCc--cccCHHHHHHHHHHHh
Q 023640 22 TLCISSQVGCKMGCNFCATGT-M----GFKSNLSSGEIVEQLVHASRLSN-IRNVVFMGMGE--PLNNYAALVEAVRIMT 93 (279)
Q Consensus 22 ~l~i~~~~gCNl~C~yC~~~~-~----~~~~~~~~~ei~~~i~~~~~~~~-~~~I~fsG~GE--Pll~~~~i~~~i~~~~ 93 (279)
.+.+. +.+|+=+|.||+... . .....++++++++.++.+... | .+.+..++ |+ +- ..+.+.++++.++
T Consensus 53 ii~ik-tg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~-Ga~r~c~~aa-gr~~~~-~~~~i~~~v~~Vk 128 (335)
T COG0502 53 LISIK-TGCCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAA-GATRFCMGAA-GRGPGR-DMEEVVEAIKAVK 128 (335)
T ss_pred EEEee-cCCCCCCCCCccccccCcCCCchhhcCCHHHHHHHHHHHHHc-CCceEEEEEe-ccCCCc-cHHHHHHHHHHHH
Confidence 34443 345799999998743 1 123568899999999988764 5 56677777 76 42 2578899999999
Q ss_pred -CCCCCCCCCeEEEEcCCchhh--hHHHhccCCCce-EEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeE
Q 023640 94 -GLPFQVSPKRITVSTVGIVHA--INKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI 169 (279)
Q Consensus 94 -~~g~~~~~~~v~i~TNG~~~~--~~~l~~~~~~~~-i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v 169 (279)
+.| +.+++ |-|.+.. .++|++.+ ++ ..--+++ +++.|..+.+. .++++-++.+ +.++++|..+
T Consensus 129 ~~~~-----le~c~-slG~l~~eq~~~L~~aG--vd~ynhNLeT-s~~~y~~I~tt---~t~edR~~tl-~~vk~~Gi~v 195 (335)
T COG0502 129 EELG-----LEVCA-SLGMLTEEQAEKLADAG--VDRYNHNLET-SPEFYENIITT---RTYEDRLNTL-ENVREAGIEV 195 (335)
T ss_pred HhcC-----cHHhh-ccCCCCHHHHHHHHHcC--hhheeccccc-CHHHHcccCCC---CCHHHHHHHH-HHHHHcCCcc
Confidence 456 45544 4565432 55666664 33 4456777 88999999764 6899999999 6778888766
Q ss_pred EEEEEEeCCCCCcHHHHHHHHHHHhhCC-cE-EEEEecCCCCCCCCcC---CCCHHHHHHHHHHHH
Q 023640 170 FIEYIMLDGVNDEEQHAHQLGKLLETFQ-VV-VNLIPFNPIGSVSQFR---TSSDDKVSSFQKILR 230 (279)
Q Consensus 170 ~i~~vv~~g~nd~~~~l~~l~~~l~~~~-~~-i~l~~~~p~~~~~~~~---~~~~e~l~~~~~~l~ 230 (279)
-- -.+-|++.+.++-.+++..|+++. +. |-+..++|. +++.+. ..+.-+..+....++
T Consensus 196 cs--GgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~P~-~GTPle~~~~~~~~e~lk~IA~~R 258 (335)
T COG0502 196 CS--GGIVGLGETVEDRAELLLELANLPTPDSVPINFLNPI-PGTPLENAKPLDPFEFLKTIAVAR 258 (335)
T ss_pred cc--ceEecCCCCHHHHHHHHHHHHhCCCCCeeeeeeecCC-CCCccccCCCCCHHHHHHHHHHHH
Confidence 53 334477889899888888888887 54 666677777 455544 556655555555444
No 139
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=98.88 E-value=2.1e-07 Score=82.42 Aligned_cols=165 Identities=15% Similarity=0.222 Sum_probs=111.4
Q ss_pred EeccCCcCccCccccCCCCC-Cc----cCCCHHH-HHHHHHHHhc--cCCCceEEEecCCccccCHHH----HHHHHHHH
Q 023640 25 ISSQVGCKMGCNFCATGTMG-FK----SNLSSGE-IVEQLVHASR--LSNIRNVVFMGMGEPLNNYAA----LVEAVRIM 92 (279)
Q Consensus 25 i~~~~gCNl~C~yC~~~~~~-~~----~~~~~~e-i~~~i~~~~~--~~~~~~I~fsG~GEPll~~~~----i~~~i~~~ 92 (279)
+++..||.+.|.|||..... .. ..+.+++ +++.+.+-.. .+....|.++..=||....+. ...+++.+
T Consensus 33 inpy~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpyqp~E~~~~ltR~ilei~ 112 (297)
T COG1533 33 LNPYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSVTDPYQPIEKEYRLTRKILEIL 112 (297)
T ss_pred cCCcCCCCCCCceeecccccccccCCCceeeechhHHHHHHHHHhhccCCceEEEEecCCCCCCcchHHHHHHHHHHHHH
Confidence 44567999999999984321 11 2334444 6666665321 234567888888999996332 34455555
Q ss_pred hCCCCCCCCCeEEEEcCCchh--hhHHHhccC--CCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCe
Q 023640 93 TGLPFQVSPKRITVSTVGIVH--AINKFHSDL--PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 168 (279)
Q Consensus 93 ~~~g~~~~~~~v~i~TNG~~~--~~~~l~~~~--~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~ 168 (279)
.+.| ..+.|.|-+.+. +++.+.+.. ..+++.+|+-+.+++..+.+-|. ..+.++=+++++ .+.++|++
T Consensus 113 ~~~~-----~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~--apsp~~Ri~al~-~l~eaGi~ 184 (297)
T COG1533 113 LKYG-----FPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPR--APSPEERLEALK-ELSEAGIP 184 (297)
T ss_pred HHcC-----CcEEEEECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCC--CcCHHHHHHHHH-HHHHCCCe
Confidence 5566 689999998642 233333222 24788899988777788877654 357888899994 56788988
Q ss_pred EEEE-EEEeCCCCCcHHHHHHHHHHHhhCCcE
Q 023640 169 IFIE-YIMLDGVNDEEQHAHQLGKLLETFQVV 199 (279)
Q Consensus 169 v~i~-~vv~~g~nd~~~~l~~l~~~l~~~~~~ 199 (279)
+.+. ..++|++|| +++.++.+...+.++.
T Consensus 185 ~~v~v~PIiP~~~d--~e~e~~l~~~~~ag~~ 214 (297)
T COG1533 185 VGLFVAPIIPGLND--EELERILEAAAEAGAR 214 (297)
T ss_pred EEEEEecccCCCCh--HHHHHHHHHHHHcCCC
Confidence 8755 467899887 7888888888777764
No 140
>PTZ00413 lipoate synthase; Provisional
Probab=98.87 E-value=1.1e-06 Score=79.29 Aligned_cols=199 Identities=13% Similarity=0.168 Sum_probs=129.2
Q ss_pred ccCCcCccCccccCCCCCCccCCCHHHHHHHHHHHhccCCCceEEEecCC--ccccC--HHHHHHHHHHHhCCCCCCCCC
Q 023640 27 SQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMG--EPLNN--YAALVEAVRIMTGLPFQVSPK 102 (279)
Q Consensus 27 ~~~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~G--EPll~--~~~i~~~i~~~~~~g~~~~~~ 102 (279)
.+..|.-+|.||..........++++|+.+.+..+.. .|++.+++|. | +.+-. .+.+.+.++.+++.. +..
T Consensus 155 lG~~CTr~C~FCaqstg~~p~~lD~eEp~~vA~av~~-~Gl~~~VVTS-v~RDDL~D~ga~~~a~~I~~Ir~~~---p~~ 229 (398)
T PTZ00413 155 MGDHCTRGCRFCSVKTSRKPPPLDPNEPEKVAKAVAE-MGVDYIVMTM-VDRDDLPDGGASHVARCVELIKESN---PEL 229 (398)
T ss_pred cCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-cCCCEEEEEE-EcCCCCChhhHHHHHHHHHHHHccC---CCC
Confidence 5788999999998864322466799999998887665 4677777766 5 33433 356788889998752 125
Q ss_pred eEEEEcC---CchhhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhh-CCeEEEEEEEeCC
Q 023640 103 RITVSTV---GIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDG 178 (279)
Q Consensus 103 ~v~i~TN---G~~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~-~~~v~i~~vv~~g 178 (279)
.+.+.+- |....+..+++.++ ..+.--|++ .+.++..++.. ..++++.++.|+. +++. ...+.+..-+|-|
T Consensus 230 ~IevligDf~g~~e~l~~L~eAG~-dvynHNLET-v~rLyp~VRt~--~atYe~sLe~Lr~-AKe~f~~gi~tcSGiIVG 304 (398)
T PTZ00413 230 LLEALVGDFHGDLKSVEKLANSPL-SVYAHNIEC-VERITPYVRDR--RASYRQSLKVLEH-VKEFTNGAMLTKSSIMLG 304 (398)
T ss_pred eEEEcCCccccCHHHHHHHHhcCC-CEEeccccc-CHhHHHHHccC--cCCHHHHHHHHHH-HHHHhcCCceEeeeeEec
Confidence 5665542 22223555666542 223345555 46677777521 2579999999955 4543 3334444444557
Q ss_pred CCCcHHHHHHHHHHHhhCCcEEEEE-ec-CCCCCCCC-cCCCCHHHHHHHHHHHHhcCCeE
Q 023640 179 VNDEEQHAHQLGKLLETFQVVVNLI-PF-NPIGSVSQ-FRTSSDDKVSSFQKILRGSYNIR 236 (279)
Q Consensus 179 ~nd~~~~l~~l~~~l~~~~~~i~l~-~~-~p~~~~~~-~~~~~~e~l~~~~~~l~~~~gi~ 236 (279)
+.++.+++.++++.|.++++.+-.+ .| .|...... .+-.++++++.+.++.. +.|..
T Consensus 305 LGET~eEvie~m~dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~-~~Gf~ 364 (398)
T PTZ00413 305 LGETEEEVRQTLRDLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAM-KMGFL 364 (398)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHH-HcCCc
Confidence 8889999999999999999874332 32 45421111 12368999999999988 77864
No 141
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=98.81 E-value=7.2e-07 Score=74.08 Aligned_cols=189 Identities=11% Similarity=0.211 Sum_probs=112.1
Q ss_pred ccCCcCccCccccCCCCCCccCCCHHHHHHHHHHHhccCCCceEEEecCCc-cccC--HHHHHHHHHHHhCC-CCCCCCC
Q 023640 27 SQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE-PLNN--YAALVEAVRIMTGL-PFQVSPK 102 (279)
Q Consensus 27 ~~~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GE-Pll~--~~~i~~~i~~~~~~-g~~~~~~ 102 (279)
++.-|.|+|.||-+.....+-..+.+++++...++.. .|..++.+|| |- |=.. ...+.+.++++++. | .
T Consensus 17 TG~yC~lnC~HCg~~~L~~Mi~vt~~~l~k~~~el~k-kGy~g~llSG-Gm~srg~VPl~kf~d~lK~lke~~~-----l 89 (275)
T COG1856 17 TGAYCSLNCPHCGRHYLEHMIKVTTKSLLKRCMELEK-KGYEGCLLSG-GMDSRGKVPLWKFKDELKALKERTG-----L 89 (275)
T ss_pred eccceEecChHHHHHHHHHhcccchHHHHHHHHHHHh-cCceeEEEeC-CcCCCCCccHHHHHHHHHHHHHhhC-----e
Confidence 4577999999997743334445566788887777665 4789999999 71 1111 34567889999887 5 2
Q ss_pred eEEEEcCCchh--hhHHHhccCCCceEE-EEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCC
Q 023640 103 RITVSTVGIVH--AINKFHSDLPGLNLA-VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV 179 (279)
Q Consensus 103 ~v~i~TNG~~~--~~~~l~~~~~~~~i~-iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~ 179 (279)
.+...+ |+.. ..+++++++ +++. +++=+- .+.-+++.+. ..+.+..++.+ .+++++++++..++++--..
T Consensus 90 ~inaHv-GfvdE~~~eklk~~~--vdvvsLDfvgD-n~vIk~vy~l--~ksv~dyl~~l-~~L~e~~irvvpHitiGL~~ 162 (275)
T COG1856 90 LINAHV-GFVDESDLEKLKEEL--VDVVSLDFVGD-NDVIKRVYKL--PKSVEDYLRSL-LLLKENGIRVVPHITIGLDF 162 (275)
T ss_pred EEEEEe-eeccHHHHHHHHHhc--CcEEEEeecCC-hHHHHHHHcC--CccHHHHHHHH-HHHHHcCceeceeEEEEecc
Confidence 332222 3332 144555553 5653 344343 4444444433 35688899999 78899999998887762211
Q ss_pred CCcHHHHHHHHHHHhhCCcE-EEEEecCCCC--CCCCcCCCCHHHHHHHHHHHH
Q 023640 180 NDEEQHAHQLGKLLETFQVV-VNLIPFNPIG--SVSQFRTSSDDKVSSFQKILR 230 (279)
Q Consensus 180 nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~--~~~~~~~~~~e~l~~~~~~l~ 230 (279)
.--..+. +-++.+.+.... +-+.-+.|.. .....++|+.|+.-++.+.++
T Consensus 163 gki~~e~-kaIdiL~~~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR 215 (275)
T COG1856 163 GKIHGEF-KAIDILVNYEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYAR 215 (275)
T ss_pred CcccchH-HHHHHHhcCCCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHH
Confidence 1111122 334556655443 2233344442 334456778888777777766
No 142
>PRK05926 hypothetical protein; Provisional
Probab=98.80 E-value=1.9e-07 Score=85.35 Aligned_cols=169 Identities=11% Similarity=0.072 Sum_probs=111.9
Q ss_pred ccCCcCccCccccCCCC---CCccCCCHHHHHHHHHHHhccCCCceEEEecCCccc-cCHHHHHHHHHHHhCCCCCCCCC
Q 023640 27 SQVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPL-NNYAALVEAVRIMTGLPFQVSPK 102 (279)
Q Consensus 27 ~~~gCNl~C~yC~~~~~---~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPl-l~~~~i~~~i~~~~~~g~~~~~~ 102 (279)
.++.|..+|.||..... .....++++++++.+.+. . .|+..|.+.| |+.. +.++++.++++.+++.- +.+
T Consensus 74 ~Tn~C~~dC~FCaf~~~~~~~~~~~ls~eeI~~~a~~a-~-~G~~ei~iv~-G~~p~~~~e~~~e~i~~Ik~~~---p~i 147 (370)
T PRK05926 74 PTNFCQFNCTFCSFYAKPGDPKGWFYTPDQLVQSIKEN-P-SPITETHIVA-GCFPSCNLAYYEELFSKIKQNF---PDL 147 (370)
T ss_pred cCCCCCCCCCccccccCCCCcccccCCHHHHHHHHHHH-h-cCCCEEEEEe-CcCCCCCHHHHHHHHHHHHHhC---CCe
Confidence 57999999999985321 123457899999999987 3 4789999998 8753 34678899999999861 124
Q ss_pred eEEEEcC----------Cch-hh-hHHHhccCCCceEEE-EeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeE
Q 023640 103 RITVSTV----------GIV-HA-INKFHSDLPGLNLAV-SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI 169 (279)
Q Consensus 103 ~v~i~TN----------G~~-~~-~~~l~~~~~~~~i~i-Sld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v 169 (279)
++.-.|- |.. .+ +.+|++.+. ..+.- ..+..+++.++.+.|. ..+.++-++.+ +.+++.|.++
T Consensus 148 ~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl-~~~~g~GaEi~~e~~r~~~~p~--~~t~~e~l~~i-~~a~~~Gi~~ 223 (370)
T PRK05926 148 HIKALTAIEYAYLSKLDNLPVKEVLQTLKIAGL-DSIPGGGAEILVDEIRETLAPG--RLSSQGFLEIH-KTAHSLGIPS 223 (370)
T ss_pred eEEECCHHHHHHHHhhcCCCHHHHHHHHHHcCc-CccCCCCchhcCHHHHHhhCCC--CCCHHHHHHHH-HHHHHcCCcc
Confidence 4443332 111 11 344555431 12221 3444567788877653 35678889999 6678888877
Q ss_pred EEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCC
Q 023640 170 FIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNP 207 (279)
Q Consensus 170 ~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p 207 (279)
..-++ =|..++.++..+.+..++++++. +.+.+|.|
T Consensus 224 ~sgmi--~G~gEt~edrv~~l~~Lr~Lq~~t~gf~~fIp 260 (370)
T PRK05926 224 NATML--CYHRETPEDIVTHMSKLRALQDKTSGFKNFIL 260 (370)
T ss_pred cCceE--EeCCCCHHHHHHHHHHHHhcCCccCCeeeeEe
Confidence 75533 35567888899988899998765 44444443
No 143
>PRK09234 fbiC FO synthase; Reviewed
Probab=98.76 E-value=4.8e-07 Score=90.44 Aligned_cols=195 Identities=15% Similarity=0.190 Sum_probs=121.2
Q ss_pred EeccCCcCccCccccCCCCC---CccCCCHHHHHHHHHHHhccCCCceEEEecCCc-cccCHHHHHHHHHHHhCCCCCCC
Q 023640 25 ISSQVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE-PLNNYAALVEAVRIMTGLPFQVS 100 (279)
Q Consensus 25 i~~~~gCNl~C~yC~~~~~~---~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GE-Pll~~~~i~~~i~~~~~~g~~~~ 100 (279)
++.++.|..+|.||..+... ....++++++++.+.++.. .|+..|.+.| |+ |-+..+.+.++++.+|+.. +
T Consensus 530 In~TN~C~~~C~FCafs~~~~~~~~y~Ls~eeI~~~a~ea~~-~G~tev~i~g-G~~p~~~~~~y~~lir~IK~~~---p 604 (843)
T PRK09234 530 INFTNICYTGCRFCAFAQRKTDADAYTLSLDEVADRAWEAWV-AGATEVCMQG-GIHPELPGTGYADLVRAVKARV---P 604 (843)
T ss_pred eecCCCCCCCCcccccccCCCCCCcccCCHHHHHHHHHHHHH-CCCCEEEEec-CCCCCcCHHHHHHHHHHHHHhC---C
Confidence 34589999999999875321 2345899999999998876 4889999999 86 5456778889999999863 1
Q ss_pred CCeEEEEc----------CCchhh--hHHHhccCCCceEEE-EeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCC
Q 023640 101 PKRITVST----------VGIVHA--INKFHSDLPGLNLAV-SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 167 (279)
Q Consensus 101 ~~~v~i~T----------NG~~~~--~~~l~~~~~~~~i~i-Sld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~ 167 (279)
.+++.-.| .|+... +.+|.+.+. ..+-- +-.-.+++++..+.|. +.+.+.-++.+ +.+++.|+
T Consensus 605 ~i~i~afsp~Ei~~~a~~~Gl~~~e~l~~LkeAGL-ds~pgt~aeil~d~vr~~i~p~--k~~~~~wle~i-~~Ah~lGi 680 (843)
T PRK09234 605 SMHVHAFSPMEIVNGAARLGLSIREWLTALREAGL-DTIPGTAAEILDDEVRWVLTKG--KLPTAEWIEVV-TTAHEVGL 680 (843)
T ss_pred CeeEEecChHHHHHHHHHcCCCHHHHHHHHHHhCc-CccCCCchhhCCHHHHhhcCCC--CCCHHHHHHHH-HHHHHcCC
Confidence 24454332 343221 344555431 11211 1112345666666553 34666777888 56778887
Q ss_pred eEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE----EEEEe--cCCCC-CC--C--CcCCCCHHHHHHHHHHHH
Q 023640 168 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV----VNLIP--FNPIG-SV--S--QFRTSSDDKVSSFQKILR 230 (279)
Q Consensus 168 ~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~----i~l~~--~~p~~-~~--~--~~~~~~~e~l~~~~~~l~ 230 (279)
++.--+ +=|..++.++..+.+.++++++.. ..++| |.|.. +. . ..+.++.++..+...+.+
T Consensus 681 ~~~stm--m~G~~Et~edrv~hl~~LreLq~~tgGf~~fIPl~F~~~~tpl~l~~~~~~~~t~~e~Lr~iAvaR 752 (843)
T PRK09234 681 RSSSTM--MYGHVDTPRHWVAHLRVLRDIQDRTGGFTEFVPLPFVHQNAPLYLAGAARPGPTHRENRAVHALAR 752 (843)
T ss_pred Ccccce--EEcCCCCHHHHHHHHHHHHhcCcccCCeeeeeeccccCCCCCcccccCCCCCCCHHHHHHHHHHHH
Confidence 765433 336678999999999999998753 22333 33321 11 1 123467777777665554
No 144
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=98.73 E-value=6e-07 Score=84.85 Aligned_cols=181 Identities=14% Similarity=0.285 Sum_probs=105.7
Q ss_pred EEEEeccCCcCccCccccCCCCCCccCCCHHHHHHHHHHHhccC--C----CceEEEecCCccccCHHHHHHHHHHHhCC
Q 023640 22 TLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS--N----IRNVVFMGMGEPLNNYAALVEAVRIMTGL 95 (279)
Q Consensus 22 ~l~i~~~~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~~--~----~~~I~fsG~GEPll~~~~i~~~i~~~~~~ 95 (279)
...+.++.||+++|.||..+.....+..+++.+++++....+.. . .+.+.+.| +..+.+...+..+...+.+.
T Consensus 199 ~~~ve~~RGCp~~C~FC~~~~~~~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~-~~~~~~~~~~~~l~~~~~~~ 277 (490)
T COG1032 199 AFSVETSRGCPRGCRFCSITKHFKYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYG-SPALNDEKRFELLSLELIER 277 (490)
T ss_pred EEEEEeccCCCCCCCCCCCcccccccCCCHHHHHHHHHHHHHHhhhcCcccccceeecC-CccccchhhcccchHHHHHH
Confidence 56666789999999999986532245667777777777543311 1 12334444 43233333333333333333
Q ss_pred CCC-CCCCeEEEE---cCCch-hhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHH-HHHHHHHhhCCeE
Q 023640 96 PFQ-VSPKRITVS---TVGIV-HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN-ALKEYQKNSQQKI 169 (279)
Q Consensus 96 g~~-~~~~~v~i~---TNG~~-~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~-~l~~~~~~~~~~v 169 (279)
+.. ....+..+. ++-.. .....+........+.+.+++.+++..+.+. +..+.+.+++ ++ +.+++.+..+
T Consensus 278 ~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~---k~~~~~~~~~~a~-~~~~~~~~~~ 353 (490)
T COG1032 278 GLRKGCRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKIN---KGITTEEVLEEAV-KIAKEHGLRV 353 (490)
T ss_pred hcccCceeeeeccccCchhcCHHHHHHHHhhCCCcceEEeccCCCHHHHHHHh---CCCChHHHHHHHH-HHHHhCCcee
Confidence 210 111223222 11111 1122233333235577899999999988874 4567888885 77 6777888888
Q ss_pred EEEEEE-eCCCCCcHHHHHHH---HHHHhhCCcE--EEEEecCCCC
Q 023640 170 FIEYIM-LDGVNDEEQHAHQL---GKLLETFQVV--VNLIPFNPIG 209 (279)
Q Consensus 170 ~i~~vv-~~g~nd~~~~l~~l---~~~l~~~~~~--i~l~~~~p~~ 209 (279)
.+.+++ .|| ++.+++.+. ++++.+++.. +.+.++.|.+
T Consensus 354 ~~~~i~G~pg--et~ed~~~t~~~~~~~~~~~~~~~~~~~~~~p~p 397 (490)
T COG1032 354 KLYFIVGLPG--ETEEDVKETIELAKFIKKLGPKLYVSPSPFVPLP 397 (490)
T ss_pred eEEEEEcCCC--CCHHHHHHHHHHHHHHHHhCccceEEEeeeeCCC
Confidence 877776 555 355666665 7888887765 7777888873
No 145
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=98.70 E-value=1.8e-06 Score=79.37 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=78.9
Q ss_pred EcCCchhhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHH
Q 023640 107 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHA 186 (279)
Q Consensus 107 ~TNG~~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l 186 (279)
.||=+-.+++++.+.. ..-+.||+++.+++.+.++++. ...+.+++.++ .+.++++++....|++||+||. +++
T Consensus 123 LTNl~~~d~~RI~~~~-lspl~iSVhat~p~lR~~ll~n---~~a~~il~~l~-~l~~~~I~~h~qiVlcPGiNDg-~~L 196 (433)
T TIGR03279 123 LTNLPPAEWQRIEQLR-LSPLYVSVHATEPSLRARLLKN---PRAGLILEQLK-WFQERRLQLHAQVVVCPGINDG-KHL 196 (433)
T ss_pred ecCCCHHHHHHHHHcC-CCCEEEEEecCCHHHHHHHhCC---CCHHHHHHHHH-HHHHcCCeEEEEEEEcCCcCCH-HHH
Confidence 3454444455555442 2458899999999999999764 35688999994 4567799999999999999997 579
Q ss_pred HHHHHHHhhC----CcEEEEEecCCCC----C--CCCcCCCCHHHHHHHHHHH
Q 023640 187 HQLGKLLETF----QVVVNLIPFNPIG----S--VSQFRTSSDDKVSSFQKIL 229 (279)
Q Consensus 187 ~~l~~~l~~~----~~~i~l~~~~p~~----~--~~~~~~~~~e~l~~~~~~l 229 (279)
++.++.|.++ ...+.-+...|.| + .....+.++++..+..+++
T Consensus 197 ~~Ti~dL~~~~~~~~P~v~S~avVPVGlTk~R~~l~~l~~~~~e~A~~vi~~i 249 (433)
T TIGR03279 197 ERTLRDLAQFHDGDWPTVLSVAVVPVGLTRFRPEEDELTPVTPECARRVIAQV 249 (433)
T ss_pred HHHHHHHHhhcccCCCceeEEEEEccccccCCCCCCCCccCCHHHHHHHHHHH
Confidence 9999889887 3333333333443 1 2234556666666554444
No 146
>PRK09234 fbiC FO synthase; Reviewed
Probab=98.66 E-value=1.3e-06 Score=87.42 Aligned_cols=196 Identities=10% Similarity=0.093 Sum_probs=123.4
Q ss_pred EEEeccCCcCccCccccCCCC---CCccCCCHHHHHHHHHHHhccCCCceEEEecCCc-cccC----------------H
Q 023640 23 LCISSQVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE-PLNN----------------Y 82 (279)
Q Consensus 23 l~i~~~~gCNl~C~yC~~~~~---~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GE-Pll~----------------~ 82 (279)
+|+..|+.|.-+|.||..... .....++++|+++.+.+... .|+..+.|+| || |-.. .
T Consensus 73 ~~In~Tn~C~~~C~YCaF~~~~~~~~~~~ls~eEIl~~a~~~~~-~G~~e~l~t~-G~~P~~~~~~~~~~l~~~gy~~~~ 150 (843)
T PRK09234 73 VFIPLTRLCRDRCHYCTFATVPGKLEAAYLSPDEVLDIARAGAA-AGCKEALFTL-GDRPEDRWPEAREWLDERGYDSTL 150 (843)
T ss_pred EEecCCCCCCCCCCcCCCccCCCCCccccCCHHHHHHHHHHHHH-CCCCEEEEec-CCCCccccccccccccccccccHH
Confidence 577778999999999976432 12346899999999998775 4788899999 88 4431 3
Q ss_pred HHHHHHHHHHhCC-CCCCCCCeEEEEcCCch-hhhHHHhccCCCceEEEEeCCCCHHHHhhh---cCCCCCCCHHHHHHH
Q 023640 83 AALVEAVRIMTGL-PFQVSPKRITVSTVGIV-HAINKFHSDLPGLNLAVSLHAPVQDVRCQI---MPAARAFPLEKLMNA 157 (279)
Q Consensus 83 ~~i~~~i~~~~~~-g~~~~~~~v~i~TNG~~-~~~~~l~~~~~~~~i~iSld~~~~~~~~~i---~~~~~~~~~~~i~~~ 157 (279)
+.+.++++.+++. | ....+.--.+. ..+..|++.+ .+..++++...+..+... ....+...++.=++.
T Consensus 151 ey~~~~~~~ik~~~g-----l~p~i~~G~ls~~E~~~Lk~~g--~s~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~RL~t 223 (843)
T PRK09234 151 DYVRAMAIRVLEETG-----LLPHLNPGVMSWSELARLKPVA--PSMGMMLETTSRRLFEEKGGPHYGSPDKDPAVRLRV 223 (843)
T ss_pred HHHHHHHHHHHHhcC-----CCceeeeCCCCHHHHHHHHHhc--CcCCCCHHHHHHHHHHhhcccccCCCCCCHHHHHHH
Confidence 7788899988874 5 22232222222 2244555543 234455554444454221 111122345555777
Q ss_pred HHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCC-----cE-EEEEecCCCC--CCCCcCCCCHHHHHHHHHHH
Q 023640 158 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ-----VV-VNLIPFNPIG--SVSQFRTSSDDKVSSFQKIL 229 (279)
Q Consensus 158 l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~-----~~-i~l~~~~p~~--~~~~~~~~~~e~l~~~~~~l 229 (279)
+ +.+++.|.++. +.++=|+.++.++..+.+..++++. +. +-+.+|.|.. +..+.+.++.+++.+.....
T Consensus 224 i-~~A~~lGi~~t--sG~L~GiGEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~Lr~iAva 300 (843)
T PRK09234 224 L-EDAGRLSVPFT--TGILIGIGETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEELLATIAVA 300 (843)
T ss_pred H-HHHHHcCCCcc--ceEEEECCCCHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 7 56677787744 4444477888888888888888763 33 4455677752 22345568888888887766
Q ss_pred H
Q 023640 230 R 230 (279)
Q Consensus 230 ~ 230 (279)
+
T Consensus 301 R 301 (843)
T PRK09234 301 R 301 (843)
T ss_pred H
Confidence 5
No 147
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=98.54 E-value=6.7e-06 Score=74.99 Aligned_cols=196 Identities=16% Similarity=0.153 Sum_probs=114.2
Q ss_pred EEeccCCcCccCccccCCCCC---CccCCCHHHHHHHHHHHhccCCCceEEEecCCc-cccCHHHHHHHHHHHhCCCCCC
Q 023640 24 CISSQVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE-PLNNYAALVEAVRIMTGLPFQV 99 (279)
Q Consensus 24 ~i~~~~gCNl~C~yC~~~~~~---~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GE-Pll~~~~i~~~i~~~~~~g~~~ 99 (279)
++..|+-|..+|.||.-.... ....++++++.+++.+.... |+..|.|+| || |-..+++..++++.+++. +
T Consensus 62 ~in~TN~C~~~C~fCaF~~~~~~~~~y~Ls~eeI~~~~~~~~~~-G~~Evli~g-G~~p~~~~~y~~~~~~~ik~~---~ 136 (370)
T COG1060 62 NINYTNICVNDCTFCAFYRKPGDPKAYTLSPEEILEEVREAVKR-GITEVLIVG-GEHPELSLEYYEELFRTIKEE---F 136 (370)
T ss_pred cCCcchhhcCCCCccccccCCCCccccccCHHHHHHHHHHHHHc-CCeEEEEec-CcCCCcchHHHHHHHHHHHHh---C
Confidence 335789999999999653322 23479999999999998764 899999999 87 566667888999999874 1
Q ss_pred CCCeEEEEcCCch--------hh----hHHHhccCCCceEE-EEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhC
Q 023640 100 SPKRITVSTVGIV--------HA----INKFHSDLPGLNLA-VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 166 (279)
Q Consensus 100 ~~~~v~i~TNG~~--------~~----~~~l~~~~~~~~i~-iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~ 166 (279)
+.+++.-.|++-. +. +.+|.+.+. ..+- -.-.-..++.++.+. .++.+++.-++.+ +.+.+.|
T Consensus 137 p~~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGl-dsmpg~~aeil~e~vr~~~~--p~K~~~~~wle~~-~~Ah~lG 212 (370)
T COG1060 137 PDLHIHALSAGEILFLAREGGLSYEEVLKRLKEAGL-DSMPGGGAEILSEEVRKIHC--PPKKSPEEWLEIH-ERAHRLG 212 (370)
T ss_pred cchhhcccCHHHhHHHHhccCCCHHHHHHHHHHcCC-CcCcCcceeechHHHHHhhC--CCCCCHHHHHHHH-HHHHHcC
Confidence 2345555555511 11 233443321 1111 000111234444444 3457889999999 5677888
Q ss_pred CeEEEEEEEeCCCCCcHHHHHHHHHHHhhC----CcE--EEEEecCCCCC---CCCcCCCCHHHHHHHHHHHH
Q 023640 167 QKIFIEYIMLDGVNDEEQHAHQLGKLLETF----QVV--VNLIPFNPIGS---VSQFRTSSDDKVSSFQKILR 230 (279)
Q Consensus 167 ~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~----~~~--i~l~~~~p~~~---~~~~~~~~~e~l~~~~~~l~ 230 (279)
++..--+++ -++ ++.++...-...+..+ |.. +-+.+|.|... ......++.+++.+...+.+
T Consensus 213 I~~tatml~-Gh~-E~~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaR 283 (370)
T COG1060 213 IPTTATMLL-GHV-ETREDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALAR 283 (370)
T ss_pred CCccceeEE-Eec-CCHHHHHHHHHHHHHHHHHhCCcEEEEcccccCCCCCccccCCCCCCHHHHHHHHHHHH
Confidence 876644443 232 3344444433333332 322 33345666531 11223456777777766655
No 148
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=98.35 E-value=0.0002 Score=68.23 Aligned_cols=205 Identities=11% Similarity=0.173 Sum_probs=118.1
Q ss_pred CCceEEEEeccCCcCc-cCccccCCCC------CC------------ccCCCHHHHHHHHHHHhccC-CCceE--EEecC
Q 023640 18 GPRSTLCISSQVGCKM-GCNFCATGTM------GF------------KSNLSSGEIVEQLVHASRLS-NIRNV--VFMGM 75 (279)
Q Consensus 18 ~~~~~l~i~~~~gCNl-~C~yC~~~~~------~~------------~~~~~~~ei~~~i~~~~~~~-~~~~I--~fsG~ 75 (279)
++..+..++.=..||+ +|.||..+-. .+ .+.-+..++...+.++.... .++.| .|.|
T Consensus 65 gv~~v~vm~~p~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~G- 143 (522)
T TIGR01211 65 GVAVVAVMTSPHRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMG- 143 (522)
T ss_pred CeEEEEEecCCccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEEC-
Confidence 3444444433367996 6999987321 00 12233445555555544321 23334 7999
Q ss_pred CccccCH-HHHHHHHHHHhCC--CCC--------------------CCCCeEEEEcCCchhh---hHHHhccCCCceEEE
Q 023640 76 GEPLNNY-AALVEAVRIMTGL--PFQ--------------------VSPKRITVSTVGIVHA---INKFHSDLPGLNLAV 129 (279)
Q Consensus 76 GEPll~~-~~i~~~i~~~~~~--g~~--------------------~~~~~v~i~TNG~~~~---~~~l~~~~~~~~i~i 129 (279)
|-++..+ +....+++.+.+. ++. .....+++.|+--..+ +..+.+.+ ...+.+
T Consensus 144 GTft~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~~e~L~~L~~~G-~~rVsl 222 (522)
T TIGR01211 144 GTFPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCREEHIDRMLKLG-ATRVEL 222 (522)
T ss_pred CCcccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCCHHHHHHHHHcC-CCEEEE
Confidence 9999863 3344455544332 100 0124566777653222 33444443 356778
Q ss_pred EeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEE-eCCCCCcHHHHHHHHHHHhh---CCcE-EEEEe
Q 023640 130 SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM-LDGVNDEEQHAHQLGKLLET---FQVV-VNLIP 204 (279)
Q Consensus 130 Sld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv-~~g~nd~~~~l~~l~~~l~~---~~~~-i~l~~ 204 (279)
.+.+.+++..+.+. +..+.+.+++++ +.+++.|..+.+.++. +| +++.++..+.++.+.+ +++. +.+.|
T Consensus 223 GVQS~~d~VL~~in---Rght~~~v~~Ai-~~lr~~G~~v~~~LM~GLP--gqt~e~~~~t~~~l~~~~~l~pD~Ikiyp 296 (522)
T TIGR01211 223 GVQTIYNDILERTK---RGHTVRDVVEAT-RLLRDAGLKVVYHIMPGLP--GSSFERDLEMFREIFEDPRFKPDMLKIYP 296 (522)
T ss_pred ECccCCHHHHHHhC---CCCCHHHHHHHH-HHHHHcCCeEEEEeecCCC--CCCHHHHHHHHHHHHhccCCCcCEEEEec
Confidence 88999999988874 457899999999 6778888866655543 23 4566666666666653 5543 66666
Q ss_pred cCCCC--------CCCCcCCCCHHHHHHHHHHHH
Q 023640 205 FNPIG--------SVSQFRTSSDDKVSSFQKILR 230 (279)
Q Consensus 205 ~~p~~--------~~~~~~~~~~e~l~~~~~~l~ 230 (279)
..+.. ....|.+++.+++.++...+.
T Consensus 297 l~V~~gT~L~~~~~~G~y~p~t~ee~v~l~~~~~ 330 (522)
T TIGR01211 297 TLVTRGTELYELWKRGEYKPYTTEEAVELIVEIK 330 (522)
T ss_pred ceeeCCCHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 44331 133566777777666655444
No 149
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=98.26 E-value=5.7e-05 Score=66.26 Aligned_cols=213 Identities=14% Similarity=0.226 Sum_probs=136.3
Q ss_pred CCccccCccCCCCCceEEEEecc--CCcCccCccccCCCC--CC----------ccCCCHHHHHHHHHHHhccCCCceEE
Q 023640 6 SLGKYNGKPRPGGPRSTLCISSQ--VGCKMGCNFCATGTM--GF----------KSNLSSGEIVEQLVHASRLSNIRNVV 71 (279)
Q Consensus 6 ~~~~~~~~~~p~~~~~~l~i~~~--~gCNl~C~yC~~~~~--~~----------~~~~~~~ei~~~i~~~~~~~~~~~I~ 71 (279)
.||..-|+=.......++++.++ .+|-.+|.||..... .. ......+++++.+.+.. ...+.|.
T Consensus 14 ~Lg~i~g~~~~~~~~~ta~l~t~~~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~--g~~~ric 91 (339)
T COG2516 14 TLGLIRGQGLSDTRPTTAYLMTTYPGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDL--GNFKRIC 91 (339)
T ss_pred hhhcccCccccccccceeeeeeecCCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhh--ccccccc
Confidence 34555554455567778888888 999999999976321 10 12344555555555422 1346777
Q ss_pred EecCCccccCHHHHHHHHHHHh-CCCCCCCCCeEE--EEcCCchhhhHHHhccCCCceEEEEeCCCCHHHHhhh-cCCCC
Q 023640 72 FMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRIT--VSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQI-MPAAR 147 (279)
Q Consensus 72 fsG~GEPll~~~~i~~~i~~~~-~~g~~~~~~~v~--i~TNG~~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i-~~~~~ 147 (279)
++-.-+|=.. ..+..+++.++ ..+. .+.++ +.--++...+....+.+ ...+.|.+|+++++.++.+ ...+.
T Consensus 92 i~~i~~p~~~-~d~~~i~~~~~~~~~~---~itiseci~~~~~~~~l~e~~klg-~d~l~V~~daa~~~~~e~v~~~s~s 166 (339)
T COG2516 92 IQQIAYPRAL-NDLKLILERLHIRLGD---PITISECITAVSLKEELEEYRKLG-ADYLGVAEDAANEELFEKVRKTSGS 166 (339)
T ss_pred ceeecccccc-chhhhhhhhhhhccCC---ceehhhhhhcccchHHHHHHHhcc-hhhhhHHHHhcCHHHHHHHHhccCC
Confidence 7775666665 45777788777 5551 12333 22222322333344432 2335588899999999988 33333
Q ss_pred CCCHHHHHHHHHHHHHhhC-CeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCCCC---CcCCCCHHHHH
Q 023640 148 AFPLEKLMNALKEYQKNSQ-QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVS---QFRTSSDDKVS 223 (279)
Q Consensus 148 ~~~~~~i~~~l~~~~~~~~-~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~~---~~~~~~~e~l~ 223 (279)
..++++-++.+.+.+...+ .++.++..+- ...++.++-+...++.+.+-.+++..|.|. .++ +..+++.+.+.
T Consensus 167 ~~S~e~~~~~l~~~~~~~~k~rv~ihliVg--lGesD~~~ve~~~~v~~~g~~v~Lfaf~P~-~gt~me~r~~~pve~Yr 243 (339)
T COG2516 167 PHSWERYWEFLEKVAEAFGKGRVGIHLIVG--LGESDKDIVETIKRVRKRGGIVSLFAFTPL-KGTQMENRKPPPVERYR 243 (339)
T ss_pred CCcHHHHHHHHHHHHHHhccCCcceeEEec--cCCchHHHHHHHHHHHhcCceEEEEEeccc-ccccccCCCCCcHHHHH
Confidence 4678888888877776666 6677666654 455778888888889888888999999987 333 44567888877
Q ss_pred HHHHH
Q 023640 224 SFQKI 228 (279)
Q Consensus 224 ~~~~~ 228 (279)
+++..
T Consensus 244 k~q~a 248 (339)
T COG2516 244 KIQVA 248 (339)
T ss_pred HHHHH
Confidence 77543
No 150
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=98.22 E-value=0.00016 Score=62.27 Aligned_cols=199 Identities=14% Similarity=0.168 Sum_probs=121.6
Q ss_pred EEeccCCcCccCccccCCCCCCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccC---HHHHHHHHHHHhCCCCCCC
Q 023640 24 CISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN---YAALVEAVRIMTGLPFQVS 100 (279)
Q Consensus 24 ~i~~~~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~---~~~i~~~i~~~~~~g~~~~ 100 (279)
|+-.+.-|.-+|+||+..... ...++++|-.+.++.... +|++.|++|+.--==|. -..+.+.++.+++.. +
T Consensus 73 FmImG~~CTR~C~FC~V~~g~-P~~lD~~EP~rvAeaV~~-mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~---P 147 (306)
T COG0320 73 FMILGDICTRRCRFCDVKTGR-PNPLDPDEPERVAEAVKD-MGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELN---P 147 (306)
T ss_pred EeeccchhccCCCccccCCCC-CCCCCCchHHHHHHHHHH-hCCCeEEEEeeccccccccchHHHHHHHHHHHhhC---C
Confidence 333567899999999986433 455666666665555544 47899999972100010 235788999999884 3
Q ss_pred CCeEEEEcCCchhh---hHHHhccCCCceEE-EEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEe
Q 023640 101 PKRITVSTVGIVHA---INKFHSDLPGLNLA-VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIML 176 (279)
Q Consensus 101 ~~~v~i~TNG~~~~---~~~l~~~~~~~~i~-iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~ 176 (279)
...+-+.|--+.-. ++.+++..+ ++. =-++. -+.++..++ .+..++.-++-+ +..++.+..+.-..-++
T Consensus 148 ~t~iEvL~PDF~G~~~al~~v~~~~p--dV~nHNvET-VprL~~~VR---p~A~Y~~SL~~L-~~~k~~~P~i~TKSgiM 220 (306)
T COG0320 148 QTTIEVLTPDFRGNDDALEIVADAGP--DVFNHNVET-VPRLYPRVR---PGATYERSLSLL-ERAKELGPDIPTKSGLM 220 (306)
T ss_pred CceEEEeCccccCCHHHHHHHHhcCc--chhhccccc-chhcccccC---CCCcHHHHHHHH-HHHHHhCCCccccccee
Confidence 36677776544321 333444432 221 01111 133344443 346788888888 45566665555555555
Q ss_pred CCCCCcHHHHHHHHHHHhhCCcEE-EEEec-CCCCCCCC-cCCCCHHHHHHHHHHHHhcCCe
Q 023640 177 DGVNDEEQHAHQLGKLLETFQVVV-NLIPF-NPIGSVSQ-FRTSSDDKVSSFQKILRGSYNI 235 (279)
Q Consensus 177 ~g~nd~~~~l~~l~~~l~~~~~~i-~l~~~-~p~~~~~~-~~~~~~e~l~~~~~~l~~~~gi 235 (279)
-|+.++.+++.+..+-|.+.++.+ .+-+| .|...... .+-.+++++.++.+..+ ..|.
T Consensus 221 lGLGEt~~Ev~e~m~DLr~~gvdilTiGQYlqPS~~HlpV~ryv~PeeF~~~~~~a~-~~GF 281 (306)
T COG0320 221 VGLGETDEEVIEVMDDLRSAGVDILTIGQYLQPSRKHLPVQRYVTPEEFDELEEVAE-EMGF 281 (306)
T ss_pred eecCCcHHHHHHHHHHHHHcCCCEEEeccccCCccccCCceeccCHHHHHHHHHHHH-Hccc
Confidence 677888889999888888888873 33343 44321111 12368999999999998 7775
No 151
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=98.21 E-value=0.00049 Score=64.07 Aligned_cols=173 Identities=15% Similarity=0.175 Sum_probs=108.9
Q ss_pred ceEEEEeccCCcCccCccccCCCCCCccCCCHHHHH----HHHHHHhcc----CCCceEEEecCCccccC-HHHHHHHHH
Q 023640 20 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIV----EQLVHASRL----SNIRNVVFMGMGEPLNN-YAALVEAVR 90 (279)
Q Consensus 20 ~~~l~i~~~~gCNl~C~yC~~~~~~~~~~~~~~ei~----~~i~~~~~~----~~~~~I~fsG~GEPll~-~~~i~~~i~ 90 (279)
..++++-. .-|.-.|.||.............++.+ +++...... ..++.|.|-| |.|++- ++.+..++.
T Consensus 34 ~~slYiHi-PFC~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GG-GTPslL~~~~l~~ll~ 111 (416)
T COG0635 34 PLSLYIHI-PFCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVKTIYFGG-GTPSLLSPEQLERLLK 111 (416)
T ss_pred ceEEEEEc-ccccccCCCCCCeeeccCCCChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECC-CccccCCHHHHHHHHH
Confidence 56777754 679999999987543222222333333 333332221 1378999999 999985 667888888
Q ss_pred HHhCCCC-CC-CCCeEEEEcCCchhh---hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhh
Q 023640 91 IMTGLPF-QV-SPKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 165 (279)
Q Consensus 91 ~~~~~g~-~~-~~~~v~i~TNG~~~~---~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~ 165 (279)
.+++. + .. ....+++..|=...+ ...+++.+ ...+.+.+.+.+++..+.+.+ ..+.+.+.+++. .+++.
T Consensus 112 ~l~~~-~~~~~~~~EitiE~nP~~~~~e~~~~l~~~G-vNRiSlGVQsf~~~~lk~lgR---~h~~~~~~~a~~-~~~~~ 185 (416)
T COG0635 112 ALREL-FNDLDPDAEITIEANPGTVEAEKFKALKEAG-VNRISLGVQSFNDEVLKALGR---IHDEEEAKEAVE-LARKA 185 (416)
T ss_pred HHHHh-cccCCCCceEEEEeCCCCCCHHHHHHHHHcC-CCEEEeccccCCHHHHHHhcC---CCCHHHHHHHHH-HHHHc
Confidence 88765 2 12 226788888875333 33344443 234556667889999888844 356788888884 45554
Q ss_pred CC-eEEEEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEE
Q 023640 166 QQ-KIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNL 202 (279)
Q Consensus 166 ~~-~v~i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l 202 (279)
|. .+.+-.+. +| +++.+++.+-.+.+.++++. +.+
T Consensus 186 g~~~in~DLIyglP--~QT~~~~~~~l~~a~~l~pdhis~ 223 (416)
T COG0635 186 GFTSINIDLIYGLP--GQTLESLKEDLEQALELGPDHLSL 223 (416)
T ss_pred CCCcEEEEeecCCC--CCCHHHHHHHHHHHHhCCCCEEEE
Confidence 43 34444333 34 56888898888888888764 443
No 152
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.20 E-value=0.00037 Score=61.33 Aligned_cols=237 Identities=15% Similarity=0.171 Sum_probs=137.0
Q ss_pred CceEEEEeccCCcCcc----CccccCCCCCCccCCCHHHHHHHHHHHhccCC---Cc-eEE-EecCCccccCHH-----H
Q 023640 19 PRSTLCISSQVGCKMG----CNFCATGTMGFKSNLSSGEIVEQLVHASRLSN---IR-NVV-FMGMGEPLNNYA-----A 84 (279)
Q Consensus 19 ~~~~l~i~~~~gCNl~----C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~~~---~~-~I~-fsG~GEPll~~~-----~ 84 (279)
...+.++-.|.||-+. |.+|.......+..++.++++++++++..... -+ .|- |+. | -+|++. .
T Consensus 45 ~k~l~vILrT~GC~w~~~~gC~MCgY~~d~~~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTS-G-SFLD~~EVP~e~ 122 (358)
T COG1244 45 GKSLTVILRTRGCRWYREGGCYMCGYPADSAGEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTS-G-SFLDPEEVPREA 122 (358)
T ss_pred CceEEEEEecCCcceeccCCcceeccccccCCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEcc-c-ccCChhhCCHHH
Confidence 3344444456888764 88996644334677899999999998643211 12 233 555 6 456533 3
Q ss_pred HHHHHHHHhCCCCCCCCCeEEEEcCCchhh---hHHHhcc--CCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHH
Q 023640 85 LVEAVRIMTGLPFQVSPKRITVSTVGIVHA---INKFHSD--LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK 159 (279)
Q Consensus 85 i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~---~~~l~~~--~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~ 159 (279)
...+++.+.+.+ ....+.+.|=--+.+ +.++.+. +..+.|+|.|++.+++++..-+ +++.+|+++++++
T Consensus 123 R~~Il~~is~~~---~v~~vvvESRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sI--NKGftF~df~~A~- 196 (358)
T COG1244 123 RRYILERISEND---NVKEVVVESRPEFIREERLEEITEILEGKIVEVAIGLETANDKIREDSI--NKGFTFEDFVRAA- 196 (358)
T ss_pred HHHHHHHHhhcc---ceeEEEeecCchhcCHHHHHHHHHhhCCceEEEEEecccCcHHHHHHhh--hcCCcHHHHHHHH-
Confidence 455666666653 015677777553222 3334433 2246788999999999875322 5678999999999
Q ss_pred HHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCC-----------CCCCcCCCCHHHHHHHHHH
Q 023640 160 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIG-----------SVSQFRTSSDDKVSSFQKI 228 (279)
Q Consensus 160 ~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~-----------~~~~~~~~~~e~l~~~~~~ 228 (279)
+.++.+|..+....++=|-+-...+.++++++-+.......+.+.++|.. ....|+||=-=-+-++.+.
T Consensus 197 ~~ir~~g~~vktYlllKP~FlSE~eAI~D~i~Si~~~~~~~d~iSinptnVqKgTlvE~lw~~g~YRPPwLWSivEVL~~ 276 (358)
T COG1244 197 EIIRNYGAKVKTYLLLKPPFLSEKEAIEDVISSIVAAKPGTDTISINPTNVQKGTLVEKLWRRGLYRPPWLWSIVEVLRE 276 (358)
T ss_pred HHHHHcCCceeEEEEecccccChHHHHHHHHHHHHHhccCCCeEEecccccchhhHHHHHHHcCCCCCchHHHHHHHHHH
Confidence 67788898887655554544444556666666665443223333445543 1334555532223333333
Q ss_pred HHhcCCe--E-----EEeccccccccccccccccccCcCccCC
Q 023640 229 LRGSYNI--R-----TTVRKQMGQDISGACGQLVVNLPDKISA 264 (279)
Q Consensus 229 l~~~~gi--~-----v~vr~~~g~~~~~~cg~~~~~~~~~~~~ 264 (279)
++ ..+. . +-....+|..-+..|..-+...=+|.|.
T Consensus 277 ~~-~~~~~~~i~sdp~G~gs~RGphNc~~cd~~v~~aI~~fsl 318 (358)
T COG1244 277 AK-KTGPMLRILSDPVGAGSDRGPHNCGKCDKRVADAIRKFSL 318 (358)
T ss_pred HH-hcCCCCceeecCCCCCCCCCCcccchhcHHHHHHHHHhcc
Confidence 44 2232 2 2233466767777777666665555554
No 153
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=98.09 E-value=0.00044 Score=63.62 Aligned_cols=120 Identities=13% Similarity=0.161 Sum_probs=71.9
Q ss_pred EEEEcCCchhh---hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEE-eCCC
Q 023640 104 ITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM-LDGV 179 (279)
Q Consensus 104 v~i~TNG~~~~---~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv-~~g~ 179 (279)
+++.|---+-. +..++..+ ...|-+.+.+..++..+... ++.+.+.++++. ++++++|-++..+++. +||.
T Consensus 187 itiETRPD~~~ee~ld~mlkyG-~TrVELGVQSiyd~Vl~~~~---RGHtvedv~~a~-rLlKd~GfKv~~HiMpGLPgs 261 (515)
T COG1243 187 ITIETRPDYIDEEHLDQMLKYG-VTRVELGVQSIYDDVLERTK---RGHTVEDVVEAT-RLLKDAGFKVGYHIMPGLPGS 261 (515)
T ss_pred EEEecCccccCHHHHHHHHhcC-CcEEEEeeeeHHHHHHHHhc---CCccHHHHHHHH-HHHHhcCcEEEEEecCCCCCC
Confidence 66666542211 33444433 23355666666777777653 457899999999 8899999888877655 5553
Q ss_pred CCcHHHHHHHHHHHhhCCcE---EEEEec---CCCC-----CCCCcCCCCHHHHHHHHHHH
Q 023640 180 NDEEQHAHQLGKLLETFQVV---VNLIPF---NPIG-----SVSQFRTSSDDKVSSFQKIL 229 (279)
Q Consensus 180 nd~~~~l~~l~~~l~~~~~~---i~l~~~---~p~~-----~~~~~~~~~~e~l~~~~~~l 229 (279)
|-+.+++.+-+.+..-.++ +.+.|- .... ....|++.+.|+.-++...+
T Consensus 262 -~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT~Ly~mwk~G~Ykpy~~EEaVeli~~i 321 (515)
T COG1243 262 -DFERDLESFREIFEDPRFRPDMLKIYPTLVIEGTELYEMWKRGLYKPYTTEEAVELIVEI 321 (515)
T ss_pred -ChHHHHHHHHHHHhCCCCCCCeEEEeeeEEECCchHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 4567888888888765443 333321 1110 23457777777755554433
No 154
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=97.90 E-value=9.7e-05 Score=67.24 Aligned_cols=158 Identities=15% Similarity=0.186 Sum_probs=96.8
Q ss_pred ccCCcCccCccccCCCCCC-c----cCC-CHHHHHHHHHHH--------hcc-----------CCCceEEEecCCccccC
Q 023640 27 SQVGCKMGCNFCATGTMGF-K----SNL-SSGEIVEQLVHA--------SRL-----------SNIRNVVFMGMGEPLNN 81 (279)
Q Consensus 27 ~~~gCNl~C~yC~~~~~~~-~----~~~-~~~ei~~~i~~~--------~~~-----------~~~~~I~fsG~GEPll~ 81 (279)
+..+|.-+|+||+...+.. + ..+ .++-+++.+... ... ..+..-.++=.|||.+.
T Consensus 289 PslacanKcvfcWrh~tnpv~~~wrwk~d~pevil~gal~lhy~mikqmkgvpgvk~Er~~ea~evrhcalslVgepi~y 368 (601)
T KOG1160|consen 289 PSLACANKCVFCWRHDTNPVGEIWRWKMDAPEVILKGALYLHYNMIKQMKGVPGVKAERFEEAEEVRHCALSLVGEPIMY 368 (601)
T ss_pred CCcccCCCCceeeeccCCcccceEEEecCCchhhhHHHHHHHHHHHHHhhcCCCcCHHHHHhhhhhhhheeeeecccccc
Confidence 4468999999998733211 1 111 233333333321 110 12333444445699996
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 023640 82 YAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 161 (279)
Q Consensus 82 ~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~ 161 (279)
+.+..+++.+++.. +...+.||+.++. .+....+...+.+|+|+.+......+.++.-++=++..++.+ +.
T Consensus 369 -p~in~f~k~lH~k~-----issflvtnaq~pe--~~rnvk~vtqlyvsvda~Tktslk~idrPlfkdFwEr~~d~l-~~ 439 (601)
T KOG1160|consen 369 -PEINPFAKLLHQKL-----ISSFLVTNAQFPE--DIRNVKPVTQLYVSVDASTKTSLKKIDRPLFKDFWERFLDSL-KA 439 (601)
T ss_pred -hhhhHHHHHHHhcc-----chHHhcccccChH--HHhchhhhheeEEEEeecchhhhcCCCCchHHHHHHHHHHHH-HH
Confidence 67999999999986 7788999998754 344433345678899988877666654332111234444555 33
Q ss_pred HHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhh
Q 023640 162 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLET 195 (279)
Q Consensus 162 ~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~ 195 (279)
+++...+..++++++++.|. +++.+-++.++.
T Consensus 440 lk~K~qrtvyRlTlVkg~n~--dd~~Ayfnlv~r 471 (601)
T KOG1160|consen 440 LKKKQQRTVYRLTLVKGWNS--DDLPAYFNLVSR 471 (601)
T ss_pred HHHhhcceEEEEEEeccccc--cccHHHHHHHhc
Confidence 34445667889999998764 568888877764
No 155
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=97.84 E-value=0.0036 Score=54.46 Aligned_cols=180 Identities=13% Similarity=0.096 Sum_probs=113.2
Q ss_pred ccCCCHHHHHHHHHHHhccCCCceEEEecCCccc----cCHHHHHHHHHHHhCCCCCCCCCeE-EEEcCCchhhhHHHhc
Q 023640 46 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPL----NNYAALVEAVRIMTGLPFQVSPKRI-TVSTVGIVHAINKFHS 120 (279)
Q Consensus 46 ~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPl----l~~~~i~~~i~~~~~~g~~~~~~~v-~i~TNG~~~~~~~l~~ 120 (279)
...++.++.++.+..+.. .|++.|-+.+ |+|. +. +...++++.+++.+. ...+ .+.+|| ....+.+.+
T Consensus 13 ~~~~s~e~~~~i~~~L~~-~GV~~IEvg~-~~~~~~~p~~-~~~~~~i~~l~~~~~---~~~~~~l~~~~-~~~i~~a~~ 85 (265)
T cd03174 13 GATFSTEDKLEIAEALDE-AGVDSIEVGS-GASPKAVPQM-EDDWEVLRAIRKLVP---NVKLQALVRNR-EKGIERALE 85 (265)
T ss_pred CCCCCHHHHHHHHHHHHH-cCCCEEEecc-CcCccccccC-CCHHHHHHHHHhccC---CcEEEEEccCc-hhhHHHHHh
Confidence 456788998888888765 4899999999 9887 33 334678888877641 1344 677787 223444555
Q ss_pred cCCCceEEEEeCCCCHHHHhhhc-CCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE
Q 023640 121 DLPGLNLAVSLHAPVQDVRCQIM-PAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 199 (279)
Q Consensus 121 ~~~~~~i~iSld~~~~~~~~~i~-~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~ 199 (279)
.+ ...+.+++++.+ .|.... .......++.+++.+ +++++.|..+.+....+-..-.+.+++.++++.+.+.|+.
T Consensus 86 ~g-~~~i~i~~~~s~--~~~~~~~~~~~~~~~~~~~~~i-~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 161 (265)
T cd03174 86 AG-VDEVRIFDSASE--THSRKNLNKSREEDLENAEEAI-EAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGAD 161 (265)
T ss_pred CC-cCEEEEEEecCH--HHHHHHhCCCHHHHHHHHHHHH-HHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCC
Confidence 43 345667776543 333321 112223578888888 6677888888877743322014778899999999999876
Q ss_pred -EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCC-eEE--Eeccccc
Q 023640 200 -VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN-IRT--TVRKQMG 244 (279)
Q Consensus 200 -i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g-i~v--~vr~~~g 244 (279)
+.+.+. ....+++++.++.+.+++..+ +.+ ......|
T Consensus 162 ~i~l~Dt--------~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~g 202 (265)
T cd03174 162 EISLKDT--------VGLATPEEVAELVKALREALPDVPLGLHTHNTLG 202 (265)
T ss_pred EEEechh--------cCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 554322 122577888888777774333 433 3444444
No 156
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=97.49 E-value=0.035 Score=48.20 Aligned_cols=197 Identities=14% Similarity=0.174 Sum_probs=110.5
Q ss_pred cCccccCC-CC--CCccCCCHHH-HHHHHHHHhccC-CCc-eEEEecCCccccC-HHHHHHHHHHHhCC-CCCCCCCeEE
Q 023640 34 GCNFCATG-TM--GFKSNLSSGE-IVEQLVHASRLS-NIR-NVVFMGMGEPLNN-YAALVEAVRIMTGL-PFQVSPKRIT 105 (279)
Q Consensus 34 ~C~yC~~~-~~--~~~~~~~~~e-i~~~i~~~~~~~-~~~-~I~fsG~GEPll~-~~~i~~~i~~~~~~-g~~~~~~~v~ 105 (279)
.|.||... .. ...+..+..+ +.+++....+.+ +.+ -+.|.- .-=|-. .+.|.+..+.+-+. ++ .-++
T Consensus 45 GCtFC~~~g~~d~~~~~~~~i~~Q~~~q~~~~~kK~~~~kyiaYFQ~-~TNTyApvevLre~ye~aL~~~~V----VGLs 119 (312)
T COG1242 45 GCTFCSVAGSGDFAGQPKISIAEQFKEQAERMHKKWKRGKYIAYFQA-YTNTYAPVEVLREMYEQALSEAGV----VGLS 119 (312)
T ss_pred ceeeecCCCCCccccCcccCHHHHHHHHHHHHHHhhcCCcEEEEEec-cccccCcHHHHHHHHHHHhCcCCe----eEEe
Confidence 49999763 21 1233444443 333333333222 222 344554 322222 35566666655554 41 3344
Q ss_pred EEcCC-chhh-hHHHhccC-CCceEE--EEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEE-eCCC
Q 023640 106 VSTVG-IVHA-INKFHSDL-PGLNLA--VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM-LDGV 179 (279)
Q Consensus 106 i~TNG-~~~~-~~~l~~~~-~~~~i~--iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv-~~g~ 179 (279)
|.|-- .+++ .-.++..+ ...+++ +.+.+..+++-+.|.+ +..++..++++++ +++.|+++..++++ +||
T Consensus 120 IgTRPDClpd~VldlL~e~~~r~~vWvELGLQT~h~~Tlk~iNR---gHd~~~y~dav~r-~rkrgIkvc~HiI~GLPg- 194 (312)
T COG1242 120 IGTRPDCLPDDVLDLLAEYNKRYEVWVELGLQTAHDKTLKRINR---GHDFACYVDAVKR-LRKRGIKVCTHLINGLPG- 194 (312)
T ss_pred ecCCCCCCcHHHHHHHHHHhhheEEEEEeccchhhHHHHHHHhc---ccchHHHHHHHHH-HHHcCCeEEEEEeeCCCC-
Confidence 44432 1222 22222222 234555 4557888888888854 5789999999955 56779988877766 565
Q ss_pred CCcHHHHHHHHHHHhhCCcE-EEEEecCCCC--------CCCCcCCCCHHH-HHHHHHHHHhcCCeEEEeccc
Q 023640 180 NDEEQHAHQLGKLLETFQVV-VNLIPFNPIG--------SVSQFRTSSDDK-VSSFQKILRGSYNIRTTVRKQ 242 (279)
Q Consensus 180 nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~--------~~~~~~~~~~e~-l~~~~~~l~~~~gi~v~vr~~ 242 (279)
++.+++.+.++.+..+++. |.+.|++-.- ....+...+.++ ++.+.+.|+ ...-++.+...
T Consensus 195 -E~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls~eeYv~~~~d~le-~lpp~vviHRi 265 (312)
T COG1242 195 -ETRDEMLETAKIVAELGVDGIKLHPLHVVKGTPMEKMYEKGRLKFLSLEEYVELVCDQLE-HLPPEVVIHRI 265 (312)
T ss_pred -CCHHHHHHHHHHHHhcCCceEEEEEEEEecCChHHHHHHcCCceeccHHHHHHHHHHHHH-hCCcceEEEEe
Confidence 5678899999999998876 6666654331 133445567776 445566777 44445555543
No 157
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=97.34 E-value=0.0079 Score=52.02 Aligned_cols=201 Identities=13% Similarity=0.160 Sum_probs=111.1
Q ss_pred EEEEeccCCcCccCccccCCCCCCccCCCHHHHHHHHHHHhccCCCceEEEecCCc---cccCHHHHHHHHHHHhCCCCC
Q 023640 22 TLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE---PLNNYAALVEAVRIMTGLPFQ 98 (279)
Q Consensus 22 ~l~i~~~~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GE---Pll~~~~i~~~i~~~~~~g~~ 98 (279)
||.+ .+--|.-.|+||..........+++.|-.+.+..++. +|++.|+++..-- |=.--++|.+.++.+++..
T Consensus 113 TIMl-mGDTCTRGCRFCsVKTsR~PpPlDp~EPeNTAeAIas-Wgl~YiVlTSVDRDDlpDgGa~HiAkTVq~iK~k~-- 188 (360)
T KOG2672|consen 113 TIML-MGDTCTRGCRFCSVKTSRNPPPLDPNEPENTAEAIAS-WGLDYIVLTSVDRDDLPDGGANHIAKTVQKIKEKA-- 188 (360)
T ss_pred EEEe-ecCccccCcceeeeecCCCCcCCCCCCcccHHHHHHH-cCCCeEEEEecccccCcCcchHHHHHHHHHHHhhC--
Confidence 4444 3566999999999865444444455554444444443 6899999986211 1111357889999999874
Q ss_pred CCCCeEEEEcCCch---hhhHHHhccCCCceEEEEeCCCCHHHHhhhcCC--CCCCCHHHHHHHHHHHHHhhCCeEEEEE
Q 023640 99 VSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA--ARAFPLEKLMNALKEYQKNSQQKIFIEY 173 (279)
Q Consensus 99 ~~~~~v~i~TNG~~---~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~--~~~~~~~~i~~~l~~~~~~~~~~v~i~~ 173 (279)
+.+-+.-.|--+. ...+.++..+ .|+. +-+-++-..+.+- .+...|.+-+..+ +.+++....+.-.+
T Consensus 189 -p~ilvE~L~pDF~Gd~~~Ve~va~SG--LDV~----AHNvETVe~Ltp~VRD~RA~yrQSL~VL-k~aK~~~P~litkt 260 (360)
T KOG2672|consen 189 -PEILVECLTPDFRGDLKAVEKVAKSG--LDVY----AHNVETVEELTPFVRDPRANYRQSLSVL-KHAKEVKPGLITKT 260 (360)
T ss_pred -cccchhhcCccccCchHHHHHHHhcC--ccce----ecchhhHHhcchhhcCcccchHHhHHHH-HHHHhhCCCceehh
Confidence 1222322222221 1133344432 3432 2222222222110 1235688888888 45666555555555
Q ss_pred EEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCC-CC-CcCCCCHHHHHHHHHHHHhcCCe
Q 023640 174 IMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGS-VS-QFRTSSDDKVSSFQKILRGSYNI 235 (279)
Q Consensus 174 vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~-~~-~~~~~~~e~l~~~~~~l~~~~gi 235 (279)
-++-|...+++++.+..+.+...++. +.+-+|++-.. .. ...-.+++.+..-.+.-+ +.|.
T Consensus 261 siMlglgetdeei~~tl~dLr~~~vdv~t~gqym~ptkrhl~v~eyvtpekf~~w~~~~~-~lgf 324 (360)
T KOG2672|consen 261 SIMLGLGETDEEIKQTLKDLRAADVDVVTFGQYMQPTKRHLKVKEYVTPEKFDYWKEYGE-ELGF 324 (360)
T ss_pred hhhhccCCCHHHHHHHHHHHHHcCCcEEecccccCCccccceeEEeeCHHHHHHHHHHhh-hcce
Confidence 66667788889999998989888887 44445543211 11 112246666666665555 5554
No 158
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=96.95 E-value=0.19 Score=46.65 Aligned_cols=185 Identities=16% Similarity=0.172 Sum_probs=107.5
Q ss_pred CCCCC-ceEEEEeccCCcCcc----CccccCCCCCCccCCCHHHHHHHHHHHhcc--------CCCceEEEecC---C-c
Q 023640 15 RPGGP-RSTLCISSQVGCKMG----CNFCATGTMGFKSNLSSGEIVEQLVHASRL--------SNIRNVVFMGM---G-E 77 (279)
Q Consensus 15 ~p~~~-~~~l~i~~~~gCNl~----C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~--------~~~~~I~fsG~---G-E 77 (279)
-|..+ -...-+.+..||+.+ |.||-.+..+.....+++++++++..+-.. ...+-..+.|. | =
T Consensus 176 HP~yp~~vi~EiETyRGC~r~~~ggCSFCtEp~~g~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~ 255 (560)
T COG1031 176 HPNYPEYVICEIETYRGCPRRVSGGCSFCTEPVRGRPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEV 255 (560)
T ss_pred CCCCcceEEEEEeeccCCcccccCCCccccCcCcCCcccCCHHHHHHHHHHHHHhccceeeeccccceeeecccccCCCC
Confidence 45544 345556788999998 999988655556678899999999975431 01122222221 4 2
Q ss_pred cccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC---c---hhh-hHHHh----ccCCCceE-EEEeCCCCHHHHhhhcCC
Q 023640 78 PLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG---I---VHA-INKFH----SDLPGLNL-AVSLHAPVQDVRCQIMPA 145 (279)
Q Consensus 78 Pll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG---~---~~~-~~~l~----~~~~~~~i-~iSld~~~~~~~~~i~~~ 145 (279)
|--+++.++++.+-+++.-.++ .+-=.-|. + .+. -.+++ +-+-.-++ .+.+++.++...+.-
T Consensus 256 P~PnPealekL~~Gir~~AP~l---~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~N--- 329 (560)
T COG1031 256 PRPNPEALEKLFRGIRNVAPNL---KTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKN--- 329 (560)
T ss_pred CCCCHHHHHHHHHHHHhhCCCC---eeeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccCHHHHhhc---
Confidence 4446889999999998874333 22222354 2 121 11222 22211244 489999998876643
Q ss_pred CCCCCHHHHHHHHHHHHHhhCC-------e---EEEEEEE-eCCCCCcHHHHHHHHHHHhhC---Cc--E-EEEEecCCC
Q 023640 146 ARAFPLEKLMNALKEYQKNSQQ-------K---IFIEYIM-LDGVNDEEQHAHQLGKLLETF---QV--V-VNLIPFNPI 208 (279)
Q Consensus 146 ~~~~~~~~i~~~l~~~~~~~~~-------~---v~i~~vv-~~g~nd~~~~l~~l~~~l~~~---~~--~-i~l~~~~p~ 208 (279)
+-..+-+++++++ +...+.|. + -.+|++. ++| ++.+..+-=.++|+++ |. + |++.+..++
T Consensus 330 nL~~spEEvl~AV-~ivn~vG~~rg~nGlP~lLPGINfv~GL~G--EtkeT~~ln~efL~~ild~gllvRRINIRqV~~f 406 (560)
T COG1031 330 NLNASPEEVLEAV-EIVNEVGGGRGYNGLPYLLPGINFVFGLPG--ETKETYELNYEFLKEILDEGLLVRRINIRQVVVF 406 (560)
T ss_pred cccCCHHHHHHHH-HHHHHhcCccCcCCCccccccceeEecCCC--ccHHHHHhhHHHHHHHHhcCceEEEeeeeeEeec
Confidence 2346789999999 67766442 1 2355554 444 3445555555566553 32 2 555544443
No 159
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=96.51 E-value=0.14 Score=45.03 Aligned_cols=197 Identities=12% Similarity=0.217 Sum_probs=96.7
Q ss_pred ccCCcCccCccccCC-CCCCc-cCCCHHHHHHHHHHHhccCCCceEEEecCC-----ccccCHHHHHHHHHHHhCC-CCC
Q 023640 27 SQVGCKMGCNFCATG-TMGFK-SNLSSGEIVEQLVHASRLSNIRNVVFMGMG-----EPLNNYAALVEAVRIMTGL-PFQ 98 (279)
Q Consensus 27 ~~~gCNl~C~yC~~~-~~~~~-~~~~~~ei~~~i~~~~~~~~~~~I~fsG~G-----EPll~~~~i~~~i~~~~~~-g~~ 98 (279)
.|+.|-++|.||-|. ..... -..+++|++....+.-+.-=++++.++. | +=|| +.+++.++.++=. +|+
T Consensus 60 lTN~CiyDC~YCINr~s~~~pra~ftp~Eiv~ltlnfYrRnYIeGLFLSS-Gvi~~~DyTm--E~mi~var~LRle~~f~ 136 (404)
T COG4277 60 LTNFCIYDCAYCINRSSNDTPRARFTPEEIVDLTLNFYRRNYIEGLFLSS-GVIKNPDYTM--EEMIEVARILRLEHKFR 136 (404)
T ss_pred HhhhHHHhhHHHhccccCCCcccccCHHHHHHHHHHHHHHhhhhhheecc-ccccCcchHH--HHHHHHHHHHhhccccC
Confidence 468899999999883 22233 4689999998888764321256677766 5 2222 3345555555422 221
Q ss_pred CCCCeEEEEcCCchhhhHHHhccCCCc-eEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHH---HhhCC-------
Q 023640 99 VSPKRITVSTVGIVHAINKFHSDLPGL-NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ---KNSQQ------- 167 (279)
Q Consensus 99 ~~~~~v~i~TNG~~~~~~~l~~~~~~~-~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~---~~~~~------- 167 (279)
..+|..+..-+.-. -+.+.+... .+.|-|+-+++.--+.+-|. .....+.+.+.... .++..
T Consensus 137 -GYIHlK~IPgas~~---li~eaglyadRvSiNIElp~~~~lk~lap~---K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~ 209 (404)
T COG4277 137 -GYIHLKIIPGASPD---LIKEAGLYADRVSINIELPTDDGLKLLAPE---KDPTDILRSMGWIRLKILENAEDKRRKRH 209 (404)
T ss_pred -cEEEEEecCCCCHH---HHHHHhhhhheeEEeEecCCcchhhhhCCC---CChHHHHHHHHHHHHHHhhcccchhhhcc
Confidence 23666666655321 112222222 34455555555544554332 22244444442111 11100
Q ss_pred --e-----EEEEEEEeCCCCCcHHHHHHHHHHHhh-CCcE-EEEEecCCCCCCCCc----CCC--CHHHHHHHHHHHHhc
Q 023640 168 --K-----IFIEYIMLDGVNDEEQHAHQLGKLLET-FQVV-VNLIPFNPIGSVSQF----RTS--SDDKVSSFQKILRGS 232 (279)
Q Consensus 168 --~-----v~i~~vv~~g~nd~~~~l~~l~~~l~~-~~~~-i~l~~~~p~~~~~~~----~~~--~~e~l~~~~~~l~~~ 232 (279)
. -.-+ +++....++.+++-...+++-. .+.+ |..-.|.|.. .+.. +++ ...++..+-+.++ -
T Consensus 210 tp~fapaGQSTQ-mivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~Pv~-~s~~lp~~~pplmRehRLYQADwLlr-f 286 (404)
T COG4277 210 TPEFAPAGQSTQ-MIVGADGETDEDILSRSENLYGRYSLKRVYYSAFSPVP-SSPLLPDDKPPLMREHRLYQADWLLR-F 286 (404)
T ss_pred CccccCCCCceE-EEEecCCCchHHHHHHHHHHhhccceeEEEeecccccC-CCCCCcccCCchhHHHHHHHHHHHHH-H
Confidence 0 0112 2232234455666666666643 3444 7777788774 2222 111 2333444444455 7
Q ss_pred CCeE
Q 023640 233 YNIR 236 (279)
Q Consensus 233 ~gi~ 236 (279)
||..
T Consensus 287 YgF~ 290 (404)
T COG4277 287 YGFS 290 (404)
T ss_pred hCCC
Confidence 8864
No 160
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=96.17 E-value=0.071 Score=45.64 Aligned_cols=159 Identities=14% Similarity=0.288 Sum_probs=87.2
Q ss_pred EEEEeccCCcCccCccccCC-CCCC----ccCCCHHHHHHHHHHHhccCCCceEEEec-C----CccccCHHHHHHHHHH
Q 023640 22 TLCISSQVGCKMGCNFCATG-TMGF----KSNLSSGEIVEQLVHASRLSNIRNVVFMG-M----GEPLNNYAALVEAVRI 91 (279)
Q Consensus 22 ~l~i~~~~gCNl~C~yC~~~-~~~~----~~~~~~~ei~~~i~~~~~~~~~~~I~fsG-~----GEPll~~~~i~~~i~~ 91 (279)
++.---+.||.-+|.||... ++.. .+.+..+++++..+++++. |-.++..-. | |--.. ++.|.++++.
T Consensus 85 TLlsIKtGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~-GSTRFCmGaAWRD~~GRk~~-fk~IlE~ike 162 (380)
T KOG2900|consen 85 TLLSIKTGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRN-GSTRFCMGAAWRDMKGRKSA-FKRILEMIKE 162 (380)
T ss_pred EEEEeecCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHHHHhc-CCceeecchhhhhhccchhH-HHHHHHHHHH
Confidence 33333468999999999773 3222 3567888999998887753 322222211 0 22222 5778999999
Q ss_pred HhCCCCCCCCCeEEEEcCCchhh--hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeE
Q 023640 92 MTGLPFQVSPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI 169 (279)
Q Consensus 92 ~~~~g~~~~~~~v~i~TNG~~~~--~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v 169 (279)
+++.| +.++++ =|.... ..++.+.+. ....=.||.. .+.|..+.. ..++++-++.+ ..++++|+++
T Consensus 163 vr~Mg-----mEvCvT-LGMv~~qQAkeLKdAGL-TAYNHNlDTS-REyYskvIt---TRtYDdRL~Ti-~nvr~aGikv 230 (380)
T KOG2900|consen 163 VRDMG-----MEVCVT-LGMVDQQQAKELKDAGL-TAYNHNLDTS-REYYSKVIT---TRTYDDRLQTI-KNVREAGIKV 230 (380)
T ss_pred HHcCC-----ceeeee-eccccHHHHHHHHhccc-eecccCccch-hhhhcccce---ecchHHHHHHH-HHHHHhccee
Confidence 99988 566654 565432 334444431 1111234432 334444422 35788888888 4566777665
Q ss_pred EEEEEEeCCCCCcHHHHHHHHHHHhhC
Q 023640 170 FIEYIMLDGVNDEEQHAHQLGKLLETF 196 (279)
Q Consensus 170 ~i~~vv~~g~nd~~~~l~~l~~~l~~~ 196 (279)
----++ |+.+++++-..++-.|..+
T Consensus 231 CsGGIl--GLGE~e~DriGlihtLatm 255 (380)
T KOG2900|consen 231 CSGGIL--GLGESEDDRIGLIHTLATM 255 (380)
T ss_pred cccccc--cccccccceeeeeeeeccC
Confidence 422221 3344444434444444443
No 161
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=95.85 E-value=0.15 Score=46.57 Aligned_cols=56 Identities=21% Similarity=0.449 Sum_probs=44.4
Q ss_pred CCceEEEEeccCCcCccCccccCCC-CCCccCCCHHHHHHHHHHHhccCCCceEEEec
Q 023640 18 GPRSTLCISSQVGCKMGCNFCATGT-MGFKSNLSSGEIVEQLVHASRLSNIRNVVFMG 74 (279)
Q Consensus 18 ~~~~~l~i~~~~gCNl~C~yC~~~~-~~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG 74 (279)
....|.|+|.-.||+.-|.||-.+. .+..+..+.+.+++++.++.+ .|++.|++-|
T Consensus 217 ~~s~tAFvSiMRGCdNMCtyCiVpftrGreRsrpi~siv~ev~~L~~-qG~KeVTLLG 273 (552)
T KOG2492|consen 217 SSSTTAFVSIMRGCDNMCTYCIVPFTRGRERSRPIESIVEEVKRLAE-QGVKEVTLLG 273 (552)
T ss_pred CccchhHHHHHhccccccceEEEeccCCcccCCchHHHHHHHHHHhh-cCceeeeeec
Confidence 4667889988899999999998753 334566778899999988775 3788888887
No 162
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.60 E-value=0.18 Score=40.47 Aligned_cols=68 Identities=22% Similarity=0.428 Sum_probs=47.4
Q ss_pred CCCCCccccCcc-CCC-CCceEEEEeccCCcCccCccccCCCCC------------------CccCCCHHHHHHHHHHHh
Q 023640 3 YDSSLGKYNGKP-RPG-GPRSTLCISSQVGCKMGCNFCATGTMG------------------FKSNLSSGEIVEQLVHAS 62 (279)
Q Consensus 3 ~~~~~~~~~~~~-~p~-~~~~~l~i~~~~gCNl~C~yC~~~~~~------------------~~~~~~~~ei~~~i~~~~ 62 (279)
|..|+|.|+-+| +.+ .....-|+ |+++|.-|-....+ ..+.+.++++++.+.++.
T Consensus 96 YekRfgpYf~~PvVAGl~~~~kPfI-----c~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~LFetisQa~ 170 (204)
T KOG0180|consen 96 YEKRFGPYFTEPVVAGLDDDNKPFI-----CGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPDELFETISQAL 170 (204)
T ss_pred HHhhcCCcccceeEeccCCCCCeeE-----eecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 889999999999 433 44556677 99999999762211 246788999988887654
Q ss_pred ccCCCceEEEecCC
Q 023640 63 RLSNIRNVVFMGMG 76 (279)
Q Consensus 63 ~~~~~~~I~fsG~G 76 (279)
-. -+++=.+||||
T Consensus 171 Ln-a~DRDalSGwG 183 (204)
T KOG0180|consen 171 LN-AVDRDALSGWG 183 (204)
T ss_pred Hh-HhhhhhhccCC
Confidence 21 24555667766
No 163
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=91.38 E-value=9.6 Score=35.02 Aligned_cols=172 Identities=16% Similarity=0.253 Sum_probs=90.8
Q ss_pred EEeccCCcCccCccccCCCC-CCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHH---------HHHHHHHHHh
Q 023640 24 CISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYA---------ALVEAVRIMT 93 (279)
Q Consensus 24 ~i~~~~gCNl~C~yC~~~~~-~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~---------~i~~~i~~~~ 93 (279)
.++...||=-.|.||..... +.-...+.+++++.+...... |+..|-++. |=+-.+. -+-++++.+.
T Consensus 190 Ii~intgclgaCtyckTkharg~l~sy~~dslvervrt~f~e-gv~eIwlts--edTgaygrdig~slp~ll~klv~~iP 266 (547)
T KOG4355|consen 190 IISINTGCLGACTYCKTKHARGLLASYPKDSLVERVRTSFEE-GVCEIWLTS--EDTGAYGRDIGKSLPKLLWKLVEVIP 266 (547)
T ss_pred EEEeccccccccccccccccccccccCCHHHHHHHHHHHHhc-CcEEEEecc--cccchhhhhhhhhhHHHHHHHHHhcc
Confidence 33445899999999988432 233456788998888876543 666666665 3333322 2223333333
Q ss_pred CC-CCCCCCCeEEEEcCC-chh-hhHHHhcc--CCCce--EEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhC
Q 023640 94 GL-PFQVSPKRITVSTVG-IVH-AINKFHSD--LPGLN--LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 166 (279)
Q Consensus 94 ~~-g~~~~~~~v~i~TNG-~~~-~~~~l~~~--~~~~~--i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~ 166 (279)
+. + ..+. .||- +.. .+++.+.. ++.+. +.+-+.++++...-...+.--...|+.+++.+.+. -.|
T Consensus 267 e~cm-----lr~g-mTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl~emkreyc~~dfk~Vvd~Lter--VPg 338 (547)
T KOG4355|consen 267 ESCM-----LRAG-MTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVLTEMKREYCNFDFKIVVDFLTER--VPG 338 (547)
T ss_pred hhhh-----hhhc-CCCCchHHHHHHHHHHHhcCCeEEEEEecccccCchhHHHHHHHHHhhhhHHHHHHHHHhh--CCC
Confidence 21 1 1222 3454 222 23333332 22222 12444555554433221110123466666666432 234
Q ss_pred CeEEEEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 167 QKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 167 ~~v~i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
+.+.--++. .|+ ++++++++-.+++++.++- +.+.+|.|.
T Consensus 339 i~IATDiIcgFPt--ETdeDFeeTmeLv~kYKFPslfInQfyPR 380 (547)
T KOG4355|consen 339 ITIATDIICGFPT--ETDEDFEETMELVRKYKFPSLFINQFYPR 380 (547)
T ss_pred cEEeeeeeecCCC--CchHHHHHHHHHHHHccCchhhhhhcCCC
Confidence 444333332 344 4678999999999998864 777788886
No 164
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=86.14 E-value=22 Score=30.84 Aligned_cols=172 Identities=11% Similarity=0.079 Sum_probs=93.0
Q ss_pred ccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhccCCCc
Q 023640 46 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 125 (279)
Q Consensus 46 ~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~ 125 (279)
...++.++.++.+..+.+ .|++.|-+.- |.+.... .+.++.+.+.+. ...+.....+....++...+.+ ..
T Consensus 14 ~~~~~~~~k~~i~~~L~~-~Gv~~iE~g~---p~~~~~~-~e~~~~l~~~~~---~~~~~~~~r~~~~~v~~a~~~g-~~ 84 (259)
T cd07939 14 GVAFSREEKLAIARALDE-AGVDEIEVGI---PAMGEEE-REAIRAIVALGL---PARLIVWCRAVKEDIEAALRCG-VT 84 (259)
T ss_pred CCCCCHHHHHHHHHHHHH-cCCCEEEEec---CCCCHHH-HHHHHHHHhcCC---CCEEEEeccCCHHHHHHHHhCC-cC
Confidence 356788888888777654 4788777743 6565332 356677766431 1333333333222343434432 22
Q ss_pred eEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEe
Q 023640 126 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIP 204 (279)
Q Consensus 126 ~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~ 204 (279)
.+.+.+...+......+. ......++.+.+.+ +++++.|..+.+...-... .+.+.+.++++.+.+.|+. +.+-
T Consensus 85 ~i~i~~~~s~~~~~~~~~-~~~~~~~~~~~~~i-~~a~~~G~~v~~~~~~~~~--~~~~~~~~~~~~~~~~G~~~i~l~- 159 (259)
T cd07939 85 AVHISIPVSDIHLAHKLG-KDRAWVLDQLRRLV-GRAKDRGLFVSVGAEDASR--ADPDFLIEFAEVAQEAGADRLRFA- 159 (259)
T ss_pred EEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHH-HHHHHCCCeEEEeeccCCC--CCHHHHHHHHHHHHHCCCCEEEeC-
Confidence 344555322222233331 11122344455555 4566678777766654332 3578889999988888875 4432
Q ss_pred cCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEE
Q 023640 205 FNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 238 (279)
Q Consensus 205 ~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~ 238 (279)
. ......++++.++...+++.+++++.
T Consensus 160 -D------T~G~~~P~~v~~lv~~l~~~~~~~l~ 186 (259)
T cd07939 160 -D------TVGILDPFTTYELIRRLRAATDLPLE 186 (259)
T ss_pred -C------CCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 1 12235677888887777745555443
No 165
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=81.35 E-value=44 Score=30.65 Aligned_cols=172 Identities=9% Similarity=0.068 Sum_probs=93.0
Q ss_pred ccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhccCCCc
Q 023640 46 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 125 (279)
Q Consensus 46 ~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~ 125 (279)
...++.++.++.+..+.+ .|++.|-+. =|-+... -.+.++.+.+.+. ...+.....+...+++...+.+ ..
T Consensus 17 ~~~~s~~~k~~ia~~L~~-~Gv~~IEvG---~p~~~~~-~~e~i~~i~~~~~---~~~i~~~~r~~~~di~~a~~~g-~~ 87 (365)
T TIGR02660 17 GVAFTAAEKLAIARALDE-AGVDELEVG---IPAMGEE-ERAVIRAIVALGL---PARLMAWCRARDADIEAAARCG-VD 87 (365)
T ss_pred CCCCCHHHHHHHHHHHHH-cCCCEEEEe---CCCCCHH-HHHHHHHHHHcCC---CcEEEEEcCCCHHHHHHHHcCC-cC
Confidence 456888888888877665 478777663 3667633 2467777766531 1233333333333344444432 12
Q ss_pred eEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEe
Q 023640 126 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIP 204 (279)
Q Consensus 126 ~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~ 204 (279)
.+.+.+...+......+ +......++.+.+.+ +++++.|..+.+...-. .-.+.+.+.++++.+.+.|+. +.+-
T Consensus 88 ~i~i~~~~Sd~~~~~~~-~~s~~e~l~~~~~~i-~~ak~~g~~v~~~~ed~--~r~~~~~l~~~~~~~~~~Ga~~i~l~- 162 (365)
T TIGR02660 88 AVHISIPVSDLQIEAKL-RKDRAWVLERLARLV-SFARDRGLFVSVGGEDA--SRADPDFLVELAEVAAEAGADRFRFA- 162 (365)
T ss_pred EEEEEEccCHHHHHHHh-CcCHHHHHHHHHHHH-HHHHhCCCEEEEeecCC--CCCCHHHHHHHHHHHHHcCcCEEEEc-
Confidence 24444433222333333 111122344445666 56667787766654432 233577888888888888875 4431
Q ss_pred cCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEE
Q 023640 205 FNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 238 (279)
Q Consensus 205 ~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~ 238 (279)
. .....+++++.++.+.+++..++.+.
T Consensus 163 --D-----T~G~~~P~~v~~lv~~l~~~~~v~l~ 189 (365)
T TIGR02660 163 --D-----TVGILDPFSTYELVRALRQAVDLPLE 189 (365)
T ss_pred --c-----cCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 1 12235677888887777644455443
No 166
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=80.67 E-value=46 Score=30.49 Aligned_cols=171 Identities=14% Similarity=0.111 Sum_probs=96.5
Q ss_pred ccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhccCCCc
Q 023640 46 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 125 (279)
Q Consensus 46 ~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~ 125 (279)
...++.++.++.+..+.+ .|++.|-+ |-|....+. .+.++.+.+.+. ...+..-+.+...+++...+.+ ..
T Consensus 16 ~~~~s~~~k~~ia~~L~~-~Gv~~IEv---G~p~~~~~~-~e~i~~i~~~~~---~~~v~~~~r~~~~di~~a~~~g-~~ 86 (363)
T TIGR02090 16 GVSLTVEQKVEIARKLDE-LGVDVIEA---GFPIASEGE-FEAIKKISQEGL---NAEICSLARALKKDIDKAIDCG-VD 86 (363)
T ss_pred CCCCCHHHHHHHHHHHHH-cCCCEEEE---eCCCCChHH-HHHHHHHHhcCC---CcEEEEEcccCHHHHHHHHHcC-cC
Confidence 456888888888877665 47887775 447676443 577777777652 1333333333333344444443 22
Q ss_pred eEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEe
Q 023640 126 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIP 204 (279)
Q Consensus 126 ~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~ 204 (279)
.+.+.+.+.+......+. ......++.+.+.+ +++++.|..+.+...-. ...+.+.+.++++.+.+.|+. +.+-
T Consensus 87 ~i~i~~~~Sd~~~~~~~~-~~~~~~~~~~~~~i-~~ak~~G~~v~~~~eda--~r~~~~~l~~~~~~~~~~g~~~i~l~- 161 (363)
T TIGR02090 87 SIHTFIATSPIHLKYKLK-KSRDEVLEKAVEAV-EYAKEHGLIVEFSAEDA--TRTDIDFLIKVFKRAEEAGADRINIA- 161 (363)
T ss_pred EEEEEEcCCHHHHHHHhC-CCHHHHHHHHHHHH-HHHHHcCCEEEEEEeec--CCCCHHHHHHHHHHHHhCCCCEEEEe-
Confidence 344555433332222331 11122355666666 56677787776654332 233578889999988888876 4442
Q ss_pred cCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEE
Q 023640 205 FNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT 237 (279)
Q Consensus 205 ~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v 237 (279)
.. .....++++.++.+.+++..++.+
T Consensus 162 -DT------~G~~~P~~v~~li~~l~~~~~~~l 187 (363)
T TIGR02090 162 -DT------VGVLTPQKMEELIKKLKENVKLPI 187 (363)
T ss_pred -CC------CCccCHHHHHHHHHHHhcccCceE
Confidence 11 123567778888777763444443
No 167
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=80.02 E-value=15 Score=31.35 Aligned_cols=78 Identities=21% Similarity=0.225 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhhCCeEEEEEEEeCC-CCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHH-HHHHHHHH
Q 023640 152 EKLMNALKEYQKNSQQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDD-KVSSFQKI 228 (279)
Q Consensus 152 ~~i~~~l~~~~~~~~~~v~i~~vv~~g-~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e-~l~~~~~~ 228 (279)
+.+.+++ +.+++.+..+.+.-++..| +....+++.+|++.+++.|+. |.+..+.. +.+.+|-|.. -++++.+.
T Consensus 14 ~~l~~~~-~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~D---GRDt~P~S~~~yl~~l~~~ 89 (223)
T PF06415_consen 14 PVLLEAI-EHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTD---GRDTPPKSALKYLEELEEK 89 (223)
T ss_dssp HHHHHHH-HHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE----SSSS-TTTHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecC---CCCCCcchHHHHHHHHHHH
Confidence 4455555 5566777889998888774 777789999999999999975 66665554 4566655544 47777777
Q ss_pred HHhcCC
Q 023640 229 LRGSYN 234 (279)
Q Consensus 229 l~~~~g 234 (279)
+. +.|
T Consensus 90 l~-~~~ 94 (223)
T PF06415_consen 90 LA-EIG 94 (223)
T ss_dssp HH-HHT
T ss_pred HH-hhC
Confidence 77 433
No 168
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=78.30 E-value=45 Score=29.04 Aligned_cols=171 Identities=8% Similarity=0.043 Sum_probs=91.5
Q ss_pred ccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhccCCCc
Q 023640 46 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 125 (279)
Q Consensus 46 ~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~ 125 (279)
...++.++.++.+..+.+ .|++.|-+.. |-..+. ..+.++.+.+.+.. ..+..-.......++...+.+ ..
T Consensus 16 ~~~~s~~~k~~i~~~L~~-~Gv~~IEvG~---P~~~~~-~~~~~~~l~~~~~~---~~v~~~~r~~~~di~~a~~~g-~~ 86 (262)
T cd07948 16 NAFFDTEDKIEIAKALDA-FGVDYIELTS---PAASPQ-SRADCEAIAKLGLK---AKILTHIRCHMDDARIAVETG-VD 86 (262)
T ss_pred CCCCCHHHHHHHHHHHHH-cCCCEEEEEC---CCCCHH-HHHHHHHHHhCCCC---CcEEEEecCCHHHHHHHHHcC-cC
Confidence 456888888888887665 4788887754 666643 45666666654311 222222233333344444443 22
Q ss_pred eEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEe
Q 023640 126 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIP 204 (279)
Q Consensus 126 ~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~ 204 (279)
.+.+.+-. ++.+...-.+.......+.+.+.+ +++++.|..+.+...-. .....+.+.++++.+.+.|+. +.+-
T Consensus 87 ~i~i~~~~-S~~~~~~~~~~~~~e~~~~~~~~i-~~a~~~G~~v~~~~eda--~r~~~~~l~~~~~~~~~~g~~~i~l~- 161 (262)
T cd07948 87 GVDLVFGT-SPFLREASHGKSITEIIESAVEVI-EFVKSKGIEVRFSSEDS--FRSDLVDLLRVYRAVDKLGVNRVGIA- 161 (262)
T ss_pred EEEEEEec-CHHHHHHHhCCCHHHHHHHHHHHH-HHHHHCCCeEEEEEEee--CCCCHHHHHHHHHHHHHcCCCEEEEC-
Confidence 34444422 333222211111112234444555 45556676666554432 223467889999999888876 4432
Q ss_pred cCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEE
Q 023640 205 FNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT 237 (279)
Q Consensus 205 ~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v 237 (279)
. .....+++++.++.+.+++..++++
T Consensus 162 --D-----t~G~~~P~~v~~~~~~~~~~~~~~i 187 (262)
T cd07948 162 --D-----TVGIATPRQVYELVRTLRGVVSCDI 187 (262)
T ss_pred --C-----cCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 1 1223567788888777774445444
No 169
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=75.18 E-value=55 Score=28.44 Aligned_cols=169 Identities=12% Similarity=0.056 Sum_probs=90.5
Q ss_pred ccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhccCC--
Q 023640 46 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLP-- 123 (279)
Q Consensus 46 ~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~~~~-- 123 (279)
...++.++.++.+..+.+ .|++.|-+.. |..+++.. +.++.+.+.. +...+...+.+....++...+.+.
T Consensus 14 ~~~~~~~~k~~i~~~L~~-~Gv~~iEvg~---~~~~~~~~-~~~~~l~~~~---~~~~~~~l~r~~~~~v~~a~~~~~~~ 85 (268)
T cd07940 14 GVSLTPEEKLEIARQLDE-LGVDVIEAGF---PAASPGDF-EAVKRIAREV---LNAEICGLARAVKKDIDAAAEALKPA 85 (268)
T ss_pred CCCCCHHHHHHHHHHHHH-cCCCEEEEeC---CCCCHHHH-HHHHHHHHhC---CCCEEEEEccCCHhhHHHHHHhCCCC
Confidence 346788888888777654 4788777644 33444433 5666666542 124455444443333444444331
Q ss_pred Cce-EEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EE
Q 023640 124 GLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VN 201 (279)
Q Consensus 124 ~~~-i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~ 201 (279)
.++ +.+.+ +.++.....-.+......++.+.+.+ +++++.|..+.+...-... .+++.+.++++.+.+.|+. +.
T Consensus 86 ~~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~i-~~a~~~G~~v~~~~~~~~~--~~~~~~~~~~~~~~~~G~~~i~ 161 (268)
T cd07940 86 KVDRIHTFI-ATSDIHLKYKLKKTREEVLERAVEAV-EYAKSHGLDVEFSAEDATR--TDLDFLIEVVEAAIEAGATTIN 161 (268)
T ss_pred CCCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHH-HHHHHcCCeEEEeeecCCC--CCHHHHHHHHHHHHHcCCCEEE
Confidence 133 33333 33333322211111112345555666 4566677776665443322 3578889999999888875 44
Q ss_pred EEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCC
Q 023640 202 LIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN 234 (279)
Q Consensus 202 l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g 234 (279)
+- . .....+++++.++.+.+++..+
T Consensus 162 l~---D-----T~G~~~P~~v~~lv~~l~~~~~ 186 (268)
T cd07940 162 IP---D-----TVGYLTPEEFGELIKKLKENVP 186 (268)
T ss_pred EC---C-----CCCCCCHHHHHHHHHHHHHhCC
Confidence 42 1 2223567788888777774444
No 170
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=74.67 E-value=31 Score=31.46 Aligned_cols=140 Identities=15% Similarity=0.226 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCC-chhh--h-------H----------HHhccCCCceEEEEeCCCCHHHHhh
Q 023640 82 YAALVEAVRIMTGLPFQVSPKRITVSTVG-IVHA--I-------N----------KFHSDLPGLNLAVSLHAPVQDVRCQ 141 (279)
Q Consensus 82 ~~~i~~~i~~~~~~g~~~~~~~v~i~TNG-~~~~--~-------~----------~l~~~~~~~~i~iSld~~~~~~~~~ 141 (279)
.+.+.++++.++++| ..+.|-.|+ ++.. . + ++.+...-.++.||+++.+..
T Consensus 117 ~~~~~~vv~~ake~~-----ipIRIGvN~GSL~~~~~~ky~~t~~amvesA~~~~~~le~~~f~~iviSlKsSdv~---- 187 (359)
T PF04551_consen 117 REKVKEVVEAAKERG-----IPIRIGVNSGSLEKDILEKYGPTPEAMVESALEHVRILEELGFDDIVISLKSSDVP---- 187 (359)
T ss_dssp HHHHHHHHHHHHHHT------EEEEEEEGGGS-HHHHHHHCHHHHHHHHHHHHHHHHHHHCT-GGEEEEEEBSSHH----
T ss_pred HHHHHHHHHHHHHCC-----CCEEEecccccCcHHHHhhccchHHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChH----
Confidence 678999999999998 677777776 3221 0 0 122223334688999876543
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCC--CcHHHHHHHHHHHhh-CCcEEEEEecCCCCCCCCcCCCC
Q 023640 142 IMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVN--DEEQHAHQLGKLLET-FQVVVNLIPFNPIGSVSQFRTSS 218 (279)
Q Consensus 142 i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~n--d~~~~l~~l~~~l~~-~~~~i~l~~~~p~~~~~~~~~~~ 218 (279)
..+++-+.+.++..-++.+-++=- |.. .....-..+..+|.+ +|-.+.+. +. ..+
T Consensus 188 -----------~~i~ayr~la~~~dyPLHLGvTEA-G~~~~g~IkSsigiG~LL~~GIGDTIRVS-Lt---------~~p 245 (359)
T PF04551_consen 188 -----------ETIEAYRLLAERMDYPLHLGVTEA-GTGEDGTIKSSIGIGALLLDGIGDTIRVS-LT---------GDP 245 (359)
T ss_dssp -----------HHHHHHHHHHHH--S-EEEEBSSE-ESCHHHHHHHHHHHHHHHHTT--SEEEE--EC---------SSC
T ss_pred -----------HHHHHHHHHHHhcCCCeEEeecCC-CCcccchhHHHHHHHHHHHcCCCCEEEEE-CC---------CCc
Confidence 223344344444444444432211 111 112233344444433 44433331 11 112
Q ss_pred HHHHHHHHHHHHhcCCeEEEecccccccc--ccccccccccC
Q 023640 219 DDKVSSFQKILRGSYNIRTTVRKQMGQDI--SGACGQLVVNL 258 (279)
Q Consensus 219 ~e~l~~~~~~l~~~~gi~v~vr~~~g~~~--~~~cg~~~~~~ 258 (279)
.+++.-.+++|+ ..|+ |. .|.++ ||.||+...+.
T Consensus 246 ~~EV~va~~IL~-al~l----R~-~g~~~ISCPtCGRt~~Dl 281 (359)
T PF04551_consen 246 VEEVKVAFEILQ-ALGL----RK-RGPEIISCPTCGRTEFDL 281 (359)
T ss_dssp CCHHHHHHHHHH-HTTS----S--SS-EEEE----TT--SHH
T ss_pred hHHHHHHHHHHH-HhCc----Cc-CCceeeeCCCCCCccchH
Confidence 346778888888 6774 33 35555 79999876543
No 171
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=71.97 E-value=83 Score=29.02 Aligned_cols=169 Identities=12% Similarity=0.074 Sum_probs=94.2
Q ss_pred ccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCc--hhhhHHHhccCC
Q 023640 46 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGI--VHAINKFHSDLP 123 (279)
Q Consensus 46 ~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~--~~~~~~l~~~~~ 123 (279)
...++.++.++.+..+.+ .|++.|-+ |-|.+..+. .+.++.+.+.+ ....+.+-+. ..+++...+.+
T Consensus 20 ~~~~s~e~k~~ia~~L~~-~GV~~IE~---G~p~~~~~~-~e~i~~i~~~~-----~~~~i~~~~r~~~~di~~a~~~g- 88 (378)
T PRK11858 20 GVVFTNEEKLAIARMLDE-IGVDQIEA---GFPAVSEDE-KEAIKAIAKLG-----LNASILALNRAVKSDIDASIDCG- 88 (378)
T ss_pred CCCCCHHHHHHHHHHHHH-hCCCEEEE---eCCCcChHH-HHHHHHHHhcC-----CCeEEEEEcccCHHHHHHHHhCC-
Confidence 456788888888877665 37877765 468887443 46777777665 2334444332 22344444433
Q ss_pred CceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEE
Q 023640 124 GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNL 202 (279)
Q Consensus 124 ~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l 202 (279)
...+.+.+...+......+. ......++.+.+.+ +++++.|..+.+...- ..-.+.+.+.++++.+.+.|+. +.+
T Consensus 89 ~~~i~i~~~~Sd~h~~~~~~-~s~~~~l~~~~~~v-~~a~~~G~~v~~~~ed--~~r~~~~~l~~~~~~~~~~Ga~~I~l 164 (378)
T PRK11858 89 VDAVHIFIATSDIHIKHKLK-KTREEVLERMVEAV-EYAKDHGLYVSFSAED--ASRTDLDFLIEFAKAAEEAGADRVRF 164 (378)
T ss_pred cCEEEEEEcCCHHHHHHHhC-CCHHHHHHHHHHHH-HHHHHCCCeEEEEecc--CCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 22345666444334444332 11122344444555 4566677776665332 2233578888999988888876 444
Q ss_pred EecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEE
Q 023640 203 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT 237 (279)
Q Consensus 203 ~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v 237 (279)
- .. .....++++.++.+.+.+..++++
T Consensus 165 ~--DT------~G~~~P~~v~~lv~~l~~~~~~~l 191 (378)
T PRK11858 165 C--DT------VGILDPFTMYELVKELVEAVDIPI 191 (378)
T ss_pred e--cc------CCCCCHHHHHHHHHHHHHhcCCeE
Confidence 2 11 123467777777776663334443
No 172
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=71.59 E-value=79 Score=28.67 Aligned_cols=38 Identities=11% Similarity=0.021 Sum_probs=24.7
Q ss_pred CCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC
Q 023640 66 NIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 110 (279)
Q Consensus 66 ~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG 110 (279)
+++.|-+-= |-== ..+.+.++++.+++++ ..+.|-.|+
T Consensus 93 g~dkiRINP-GNig-~~e~v~~vv~~ak~~~-----ipIRIGVN~ 130 (346)
T TIGR00612 93 GVAKVRINP-GNIG-FRERVRDVVEKARDHG-----KAMRIGVNH 130 (346)
T ss_pred ccCeEEECC-CCCC-CHHHHHHHHHHHHHCC-----CCEEEecCC
Confidence 445555544 4211 2577889999999987 567777776
No 173
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=71.44 E-value=41 Score=31.21 Aligned_cols=74 Identities=8% Similarity=0.152 Sum_probs=47.6
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC-ch-------------
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG-IV------------- 112 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG-~~------------- 112 (279)
..++++++++.+++..+. |++.+++.- | ++ .+.++.+++.+ ..+.|.+-| .+
T Consensus 135 ~~mt~d~~~~~ie~qa~d-GVDfmTiH~-G---i~----~~~~~~~~~~~-----R~~giVSRGGs~~~~WM~~~~~ENP 200 (423)
T TIGR00190 135 EDMDEDDMFRAIEKQAKD-GVDFMTIHA-G---VL----LEYVERLKRSG-----RITGIVSRGGAILAAWMLHHHKENP 200 (423)
T ss_pred hhCCHHHHHHHHHHHHHh-CCCEEEEcc-c---hh----HHHHHHHHhCC-----CccCeecCcHHHHHHHHHHcCCcCc
Confidence 468899999999987764 889999887 6 43 35666666654 455566655 21
Q ss_pred --hhhHHHhccCCCceEEEEe-CCC
Q 023640 113 --HAINKFHSDLPGLNLAVSL-HAP 134 (279)
Q Consensus 113 --~~~~~l~~~~~~~~i~iSl-d~~ 134 (279)
...+++++.....|+++|| |+.
T Consensus 201 lye~fD~lLeI~~~yDVtlSLGDgl 225 (423)
T TIGR00190 201 LYKNFDYILEIAKEYDVTLSLGDGL 225 (423)
T ss_pred hHHHHHHHHHHHHHhCeeeeccCCc
Confidence 1133344433346889998 553
No 174
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=70.06 E-value=16 Score=31.34 Aligned_cols=49 Identities=31% Similarity=0.444 Sum_probs=41.1
Q ss_pred ccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCC
Q 023640 46 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPF 97 (279)
Q Consensus 46 ~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~ 97 (279)
...++.+|+++.+.+..+. |-..+-+.. |+|.+ |..+.|-++.+++.|+
T Consensus 56 Sa~~tLeeIi~~m~~a~~~-Gk~VvRLhS-GDpsi-YgA~~EQm~~L~~~gI 104 (254)
T COG2875 56 SASLTLEEIIDLMVDAVRE-GKDVVRLHS-GDPSI-YGALAEQMRELEALGI 104 (254)
T ss_pred cCcCCHHHHHHHHHHHHHc-CCeEEEeec-CChhH-HHHHHHHHHHHHHcCC
Confidence 3568999999988876653 667888999 99999 5889999999999983
No 175
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=69.32 E-value=1.2e+02 Score=29.87 Aligned_cols=160 Identities=13% Similarity=0.087 Sum_probs=89.5
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecCC------ccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCc-----hh--
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGMG------EPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGI-----VH-- 113 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~G------EPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~-----~~-- 113 (279)
..++.++.+..+..+.+ .|+..|-++| | =|+++.+. .+.++.+++.. ++..+.+...|. ..
T Consensus 22 tr~~~~d~l~ia~~ld~-~G~~siE~~G-Gatf~~~~~~~~e~p-~e~lr~l~~~~---~~~~lqml~Rg~n~vg~~~yp 95 (593)
T PRK14040 22 TRLRLDDMLPIAAKLDK-VGYWSLESWG-GATFDACIRFLGEDP-WERLRELKKAM---PNTPQQMLLRGQNLLGYRHYA 95 (593)
T ss_pred cccCHHHHHHHHHHHHH-cCCCEEEecC-CcchhhhccccCCCH-HHHHHHHHHhC---CCCeEEEEecCcceeccccCc
Confidence 46788888887776554 3788888887 7 56665222 35555555542 224555555652 11
Q ss_pred h--hHH---HhccCCCceE-EEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeE--EEEEEEeCCCCCcHHH
Q 023640 114 A--INK---FHSDLPGLNL-AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI--FIEYIMLDGVNDEEQH 185 (279)
Q Consensus 114 ~--~~~---l~~~~~~~~i-~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v--~i~~vv~~g~nd~~~~ 185 (279)
+ ... .+... .+++ .|. |+.++ ++.+..++ +++++.|..+ .+.++..+ .++.+.
T Consensus 96 ddvv~~~v~~a~~~-Gid~~rif-d~lnd--------------~~~~~~ai-~~ak~~G~~~~~~i~yt~~p--~~~~~~ 156 (593)
T PRK14040 96 DDVVERFVERAVKN-GMDVFRVF-DAMND--------------PRNLETAL-KAVRKVGAHAQGTLSYTTSP--VHTLQT 156 (593)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEe-eeCCc--------------HHHHHHHH-HHHHHcCCeEEEEEEEeeCC--ccCHHH
Confidence 1 111 11112 2343 232 22222 34555666 5667777764 35555554 346778
Q ss_pred HHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEEe
Q 023640 186 AHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 239 (279)
Q Consensus 186 l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~v 239 (279)
+.++++.+.+.|+. +.+- .. .....++++.++.+.+++..++++.+
T Consensus 157 ~~~~a~~l~~~Gad~i~i~---Dt-----~G~l~P~~~~~lv~~lk~~~~~pi~~ 203 (593)
T PRK14040 157 WVDLAKQLEDMGVDSLCIK---DM-----AGLLKPYAAYELVSRIKKRVDVPLHL 203 (593)
T ss_pred HHHHHHHHHHcCCCEEEEC---CC-----CCCcCHHHHHHHHHHHHHhcCCeEEE
Confidence 88899888888876 4442 11 12246777777777777445555443
No 176
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=69.30 E-value=50 Score=30.77 Aligned_cols=74 Identities=8% Similarity=0.170 Sum_probs=47.5
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC-ch-------------
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG-IV------------- 112 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG-~~------------- 112 (279)
..++.+++++.+.+..+. |++.+++.- | ++ .+.++.+++.+ ..+.|.+-| .+
T Consensus 138 ~~mt~d~~~~~ie~qa~~-GVDfmTiHc-G---i~----~~~~~~~~~~~-----R~~giVSRGGs~~~~WM~~n~~ENP 203 (431)
T PRK13352 138 VDMTEDDLFDVIEKQAKD-GVDFMTIHC-G---VT----RETLERLKKSG-----RIMGIVSRGGSFLAAWMLHNNKENP 203 (431)
T ss_pred hhCCHHHHHHHHHHHHHh-CCCEEEEcc-c---hh----HHHHHHHHhcC-----CccCeecCCHHHHHHHHHHcCCcCc
Confidence 468899999999987764 899999887 6 43 35666666554 445555555 21
Q ss_pred --hhhHHHhccCCCceEEEEe-CCC
Q 023640 113 --HAINKFHSDLPGLNLAVSL-HAP 134 (279)
Q Consensus 113 --~~~~~l~~~~~~~~i~iSl-d~~ 134 (279)
...+++++.....|+++|| |+.
T Consensus 204 lye~fD~lLeI~~~yDVtlSLGDgl 228 (431)
T PRK13352 204 LYEHFDYLLEILKEYDVTLSLGDGL 228 (431)
T ss_pred hHHHHHHHHHHHHHhCeeeeccCCc
Confidence 1133344433346899998 554
No 177
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=67.13 E-value=38 Score=25.58 Aligned_cols=57 Identities=9% Similarity=0.197 Sum_probs=40.9
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 109 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TN 109 (279)
..++.+++...+.+......-..|.+.+ +.-+.++.+.++++.+++.|+ .++++.||
T Consensus 65 ~~v~~~~L~~~l~~~~~~~~~~~v~I~a--D~~~~~~~vv~v~d~~~~aG~----~~v~l~t~ 121 (122)
T TIGR02803 65 DPVARETLGTALDALTEGDKDTTIFFRA--DKTVDYGDLMKVMNLLRQAGY----LKIGLVGL 121 (122)
T ss_pred ccCCHHHHHHHHHHHHhcCCCceEEEEc--CCCCCHHHHHHHHHHHHHcCC----CEEEEEec
Confidence 3467788887777654321224577766 666777899999999999984 57888886
No 178
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=63.67 E-value=93 Score=26.50 Aligned_cols=97 Identities=20% Similarity=0.114 Sum_probs=58.0
Q ss_pred ceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCC-
Q 023640 68 RNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA- 146 (279)
Q Consensus 68 ~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~- 146 (279)
-.|..+|+|=|-.. -+..+++....=. .-+.+-|.|.+.. ....-|+.|.-.+.++....++.-..
T Consensus 58 iSvmg~GmGipS~s-IY~~ELi~~y~Vk------~iIRvGt~Gal~~------~v~l~DvVia~~A~tds~~~~~~f~~~ 124 (236)
T COG0813 58 ISVMGHGMGIPSIS-IYSRELITDYGVK------KIIRVGTCGALSE------DVKLRDVVIAQGASTDSNVNRIRFKPH 124 (236)
T ss_pred EEEEEecCCCccHH-HHHHHHHHHhCcc------eEEEEEccccccC------CcccceEEEeccccCcchhhhcccCcc
Confidence 36888999988875 4556666654322 4689999997532 11124677777666555433332111
Q ss_pred ---CCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCC
Q 023640 147 ---RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDG 178 (279)
Q Consensus 147 ---~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g 178 (279)
.--+++.+.++. +.+++.|+.+.+-.++..+
T Consensus 125 df~~~ad~~Ll~~a~-~~A~e~gi~~hvgnv~ssD 158 (236)
T COG0813 125 DFAPIADFELLEKAY-ETAKELGIDTHVGNVFSSD 158 (236)
T ss_pred cccccCCHHHHHHHH-HHHHHhCCceeeeeeeeee
Confidence 112455555555 7788889888874454443
No 179
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=63.18 E-value=58 Score=28.77 Aligned_cols=106 Identities=11% Similarity=0.122 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHHhhCCeEEEEEEEeCC--CCCcHHHHHHHHHHHhhCC-cEEEEEecCCCCCCCCcCCCCHHHHHHHH
Q 023640 150 PLEKLMNALKEYQKNSQQKIFIEYIMLDG--VNDEEQHAHQLGKLLETFQ-VVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 226 (279)
Q Consensus 150 ~~~~i~~~l~~~~~~~~~~v~i~~vv~~g--~nd~~~~l~~l~~~l~~~~-~~i~l~~~~p~~~~~~~~~~~~e~l~~~~ 226 (279)
.++++.+++.++....+..+.+.++--.| ...+-+++.++++.+.+.. +.+.+-.-+-+.+ .+...+.+.++++.
T Consensus 119 ~l~~i~~~Ln~~~~~~~v~i~~e~~agegs~~g~~F~~L~eii~~~~~~~~igvCiDtcH~~Aa--gy~~~~~~~~~~vl 196 (280)
T COG0648 119 GLNRIAEALNELLEEEGVIILLENTAGEGSGKGTQFGELAEIIDLIEEKERIGVCIDTCHAFAA--GYDIITEEDFEKVL 196 (280)
T ss_pred HHHHHHHHHHHHhhccCCeEEEEEeccccCccccchhhHHHHHHhhcccCceEEEEEchhhhhc--cCCcCcHHHHHHHH
Confidence 46677777766655312233333333222 3345677888888887764 4455444454423 33334557888888
Q ss_pred HHHHhcCCeEEEeccccccccccccccccccC
Q 023640 227 KILRGSYNIRTTVRKQMGQDISGACGQLVVNL 258 (279)
Q Consensus 227 ~~l~~~~gi~v~vr~~~g~~~~~~cg~~~~~~ 258 (279)
+.+.+..|++ .++..+=++++-.||..+..|
T Consensus 197 ~~~d~~~G~~-~~~~~Hlndsk~~~G~~kDRH 227 (280)
T COG0648 197 NEFDKVLGLE-YLKHIHLNDSKYPLGSNKDRH 227 (280)
T ss_pred HHHHHHhChh-hheeEeecCcccccccccccc
Confidence 8777566765 445555556666777765555
No 180
>smart00642 Aamy Alpha-amylase domain.
Probab=62.11 E-value=37 Score=27.32 Aligned_cols=21 Identities=5% Similarity=0.150 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHhcCCeEEEe
Q 023640 218 SDDKVSSFQKILRGSYNIRTTV 239 (279)
Q Consensus 218 ~~e~l~~~~~~l~~~~gi~v~v 239 (279)
+.++++++.+.++ +.|+.|.+
T Consensus 68 t~~d~~~lv~~~h-~~Gi~vil 88 (166)
T smart00642 68 TMEDFKELVDAAH-ARGIKVIL 88 (166)
T ss_pred CHHHHHHHHHHHH-HCCCEEEE
Confidence 5789999999999 78987643
No 181
>PRK01076 L-rhamnose isomerase; Provisional
Probab=62.06 E-value=75 Score=29.55 Aligned_cols=117 Identities=11% Similarity=0.113 Sum_probs=66.4
Q ss_pred ccCCCHHHHHHHHHHHhcc-CCCceEEEecC----Ccccc----CHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhH
Q 023640 46 KSNLSSGEIVEQLVHASRL-SNIRNVVFMGM----GEPLN----NYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAIN 116 (279)
Q Consensus 46 ~~~~~~~ei~~~i~~~~~~-~~~~~I~fsG~----GEPll----~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~ 116 (279)
++..+++|+.+.+..+... ++...|++.-. ||..= .++++..+++.++++|+ .+.+.+|-+.
T Consensus 67 G~aR~~~El~~D~~~~~~L~pg~~~vnLH~~y~~~~~~vdrd~~~p~~f~~w~~~Ak~~Gl-----glDfNpn~Fs---- 137 (419)
T PRK01076 67 GKARNADELRADLEKALSLIPGKHRLNLHAIYLESDTPVDRDEIEPEHFKNWVEWAKENGL-----GLDFNPTCFS---- 137 (419)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCceeeecccccCCCcccccccCcccHHHHHHHHHHcCC-----CcCcCcccCC----
Confidence 5678899999888865432 33445554431 32111 24667889999999983 3334444331
Q ss_pred HHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCC
Q 023640 117 KFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 181 (279)
Q Consensus 117 ~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd 181 (279)
.+.....+||-.+++++++..... ....++-.+.+.++.|.+-.+++=+-.|.||
T Consensus 138 -----h~~~k~G~SLs~pD~~iR~fwI~H-----~~~c~~I~~~~g~~lGs~~~~niWipDG~kd 192 (419)
T PRK01076 138 -----HPLSADGFTLSHPDPEIRQFWIEH-----CKASRRISAYFGEELGTPCVMNIWIPDGMKD 192 (419)
T ss_pred -----CccccCCCcccCCCHHHHHHHHHH-----HHHHHHHHHHHHHHhCCccceeEEeCCCCCC
Confidence 223344578888999998866321 1222333323344666665555555556773
No 182
>COG0007 CysG Uroporphyrinogen-III methylase [Coenzyme metabolism]
Probab=60.36 E-value=24 Score=30.48 Aligned_cols=54 Identities=22% Similarity=0.206 Sum_probs=41.5
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEc
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVST 108 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~T 108 (279)
+.+..+++.+.+.+.... |...|-+-| |+|++. .+-.+-++.+.+.| +.+.+..
T Consensus 63 ~~~~q~eIn~~lv~~a~~-G~~VVRLKg-GDP~iF-GRggEE~~~l~~~g-----I~~eVVP 116 (244)
T COG0007 63 HSKPQDEINALLVELARE-GKRVVRLKG-GDPYIF-GRGGEEIEALAEAG-----IEFEVVP 116 (244)
T ss_pred CCCCHHHHHHHHHHHHhc-CCeEEEecC-CCCCee-cCcHHHHHHHHHcC-----CceEEeC
Confidence 567788888888877654 667899999 999995 77778888888888 4555543
No 183
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=58.66 E-value=78 Score=23.99 Aligned_cols=25 Identities=0% Similarity=-0.001 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCc
Q 023640 82 YAALVEAVRIMTGLPFQVSPKRITVSTVGI 111 (279)
Q Consensus 82 ~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~ 111 (279)
++.+.++++.+++.| ..+.+.||+.
T Consensus 31 ~~gv~e~L~~Lk~~g-----~~l~i~Sn~~ 55 (128)
T TIGR01681 31 IKEIRDKLQTLKKNG-----FLLALASYND 55 (128)
T ss_pred HHHHHHHHHHHHHCC-----eEEEEEeCCC
Confidence 467899999999988 7999999993
No 184
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=57.99 E-value=1.4e+02 Score=26.58 Aligned_cols=141 Identities=13% Similarity=0.260 Sum_probs=75.6
Q ss_pred CccccCCCCCCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhh
Q 023640 35 CNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHA 114 (279)
Q Consensus 35 C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~ 114 (279)
|.||-.+..+.-...+..+.++. +.++.|.+.+-++- | .. +.=..+...+.+.| -.+.++.|+....
T Consensus 47 CD~C~~Grldei~kPpI~~F~~d---laeFlg~D~~R~t~-G---AR-e~KfavMhal~~~g-----d~vV~D~~aHYtt 113 (382)
T COG1103 47 CDFCLEGRLDEITKPPIKDFLED---LAEFLGMDEVRVTA-G---AR-EAKFAVMHALCKEG-----DWVVVDSLAHYTT 113 (382)
T ss_pred hhhhccCccccccCCcHHHHHHH---HHHHhCCceeeecc-c---ch-hhHHHHHHHhccCC-----CEEEEcCcchHHH
Confidence 88997665543333334444444 44445778888888 7 32 32234556666666 5788999986543
Q ss_pred hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEE-eCCCCCcHHHHHHHHHHH
Q 023640 115 INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM-LDGVNDEEQHAHQLGKLL 193 (279)
Q Consensus 115 ~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv-~~g~nd~~~~l~~l~~~l 193 (279)
. ++.+.....+..--++..++. ++. ...+.++++.+ ..+.|..+.+..+- ..|...+..+...+++.+
T Consensus 114 y--vAAEragl~v~eVp~tg~Pey--~i~----~e~y~~viee~---~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic 182 (382)
T COG1103 114 Y--VAAERAGLNVAEVPNTGYPEY--KIT----PEGYAEVIEEV---KDEGGDPPALALLTHVDGEYGNLADAKKVAKIC 182 (382)
T ss_pred H--HHHHhcCCeEEecCCCCCCce--Eec----HHHHHHHHHHH---HhccCCCceEEEEeccCCCcCCchhhHHHHHHH
Confidence 1 121111234432113333321 111 12345555544 34555555443332 344455677889999999
Q ss_pred hhCCcE
Q 023640 194 ETFQVV 199 (279)
Q Consensus 194 ~~~~~~ 199 (279)
.+.++.
T Consensus 183 ~e~gvP 188 (382)
T COG1103 183 REYGVP 188 (382)
T ss_pred HHcCCc
Confidence 998763
No 185
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=57.87 E-value=11 Score=27.55 Aligned_cols=38 Identities=24% Similarity=0.355 Sum_probs=27.7
Q ss_pred CceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchh
Q 023640 67 IRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH 113 (279)
Q Consensus 67 ~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~ 113 (279)
++++.+.| ++|+-. ..++++.+++.| ..+.+.||....
T Consensus 5 ~dGvl~~g-~~~ipg---a~e~l~~L~~~g-----~~~~~lTNns~~ 42 (101)
T PF13344_consen 5 LDGVLYNG-NEPIPG---AVEALDALRERG-----KPVVFLTNNSSR 42 (101)
T ss_dssp STTTSEET-TEE-TT---HHHHHHHHHHTT-----SEEEEEES-SSS
T ss_pred CccEeEeC-CCcCcC---HHHHHHHHHHcC-----CCEEEEeCCCCC
Confidence 34566678 888654 468999999988 799999999754
No 186
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=57.24 E-value=1.5e+02 Score=28.63 Aligned_cols=79 Identities=20% Similarity=0.263 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHhhCCeEEEEEEEeCC-CCCcHHHHHHHHHHHhhCCc-EEEEEecCCCCCCCCcCCCCHHH-HHHHHH
Q 023640 151 LEKLMNALKEYQKNSQQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDK-VSSFQK 227 (279)
Q Consensus 151 ~~~i~~~l~~~~~~~~~~v~i~~vv~~g-~nd~~~~l~~l~~~l~~~~~-~i~l~~~~p~~~~~~~~~~~~e~-l~~~~~ 227 (279)
.+.+.+++ +..++.+..+.+.-++..| +....+++.+|++.+++.|+ ++.+..|.. +.+.++.|... ++++.+
T Consensus 91 n~~l~~~~-~~~~~~~~~lHl~GL~SdGgVHsh~~hl~~l~~~a~~~g~~~v~vH~~~D---GRD~~p~s~~~~~~~l~~ 166 (501)
T TIGR01307 91 NPALLGAI-DRAKDNNGKLHLMGLVSDGGVHSHIDHLIALIELAAERGIEKVVLHAFTD---GRDTAPKSAESYLEQLQA 166 (501)
T ss_pred CHHHHHHH-HHHHhcCCceEEEEeccCCCCcchHHHHHHHHHHHHHcCCCeEEEEEecC---CCCCCchhHHHHHHHHHH
Confidence 44556666 4456778889998888775 77778999999999999988 476665554 45666555544 666777
Q ss_pred HHHhcCC
Q 023640 228 ILRGSYN 234 (279)
Q Consensus 228 ~l~~~~g 234 (279)
.++ +.|
T Consensus 167 ~~~-~~~ 172 (501)
T TIGR01307 167 FLK-EIG 172 (501)
T ss_pred HHH-HhC
Confidence 776 444
No 187
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=57.07 E-value=4.5 Score=37.22 Aligned_cols=58 Identities=12% Similarity=0.024 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHhcc--CC-CceEEEecCCccccCH---HHHHHHHHHHhCCCCCCCCCeEEEEcCCch
Q 023640 49 LSSGEIVEQLVHASRL--SN-IRNVVFMGMGEPLNNY---AALVEAVRIMTGLPFQVSPKRITVSTVGIV 112 (279)
Q Consensus 49 ~~~~ei~~~i~~~~~~--~~-~~~I~fsG~GEPll~~---~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~ 112 (279)
.+.+++++.+.+.... .. -..+++++ |||+.++ ....+++..+++.| .+..+.|++..
T Consensus 71 ~~~~~v~~~l~~~~~~~v~~~ap~~~~s~-ge~~~~~~~~~~~~~l~~~lk~lG-----f~~v~et~~~a 134 (374)
T TIGR02512 71 DHVDRVLKALADPKKVVVVQIAPAVRVAL-GEEFGMPIGTDVTGKMVAALRKLG-----FDYVFDTNFAA 134 (374)
T ss_pred ccHHHHHHHhccccceEEEEeChHHHHHH-HHHhCCCccchHHHHHHHHHHHcC-----CCEEEECcHHH
Confidence 3455666555432211 00 12466778 9999864 45778999999988 68899999753
No 188
>PRK05434 phosphoglyceromutase; Provisional
Probab=56.59 E-value=1.5e+02 Score=28.67 Aligned_cols=80 Identities=18% Similarity=0.186 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHhhCCeEEEEEEEeCC-CCCcHHHHHHHHHHHhhCCc-EEEEEecCCCCCCCCcCCCCHHH-HHHHHH
Q 023640 151 LEKLMNALKEYQKNSQQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDK-VSSFQK 227 (279)
Q Consensus 151 ~~~i~~~l~~~~~~~~~~v~i~~vv~~g-~nd~~~~l~~l~~~l~~~~~-~i~l~~~~p~~~~~~~~~~~~e~-l~~~~~ 227 (279)
.+.+.+++ +..++.+..+.+.-++..| +....+++.+|++.+++.|+ ++.+..|.. +.+..+.|... ++++.+
T Consensus 95 n~~~~~~~-~~~~~~~~~lHl~GL~SdggVHsh~~hl~~l~~~a~~~g~~~v~vH~~~D---GRD~~p~s~~~~i~~l~~ 170 (507)
T PRK05434 95 NPALLDAI-DKAKKNGGALHLMGLLSDGGVHSHIDHLFALLELAKEEGVKKVYVHAFLD---GRDTPPKSALGYLEELEA 170 (507)
T ss_pred CHHHHHHH-HHHHhcCCeEEEEEeccCCCcccHHHHHHHHHHHHHHcCCCEEEEEEecC---CCCCCchhHHHHHHHHHH
Confidence 34555666 4456778889998888775 67778999999999999998 576665554 45665555444 667777
Q ss_pred HHHhcCCe
Q 023640 228 ILRGSYNI 235 (279)
Q Consensus 228 ~l~~~~gi 235 (279)
.++ +.|.
T Consensus 171 ~~~-~~~~ 177 (507)
T PRK05434 171 KLA-ELGV 177 (507)
T ss_pred HHH-HhCC
Confidence 777 5553
No 189
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=55.91 E-value=14 Score=29.77 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=29.4
Q ss_pred CCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCch
Q 023640 66 NIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV 112 (279)
Q Consensus 66 ~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~ 112 (279)
.+-.|++.| |+-+- -..++++++++.| ..+|.|||.+
T Consensus 108 DVvvi~IAG-GdT~P---vTaaii~ya~~rG------~~TisT~GVF 144 (217)
T COG4015 108 DVVVICIAG-GDTIP---VTAAIINYAKERG------IKTISTNGVF 144 (217)
T ss_pred CEEEEEecC-CCcch---hHHHHHHHHHHcC------ceEeecCcee
Confidence 355788999 97554 3568999999997 6889999975
No 190
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=54.74 E-value=1.3e+02 Score=25.32 Aligned_cols=174 Identities=11% Similarity=0.092 Sum_probs=84.2
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEEecCCccccCHH---HHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHH----Hhc
Q 023640 48 NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYA---ALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINK----FHS 120 (279)
Q Consensus 48 ~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~---~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~----l~~ 120 (279)
.++.++.++.+..+.+ .|++.|-+. =|+...+ .+.++.+.+.+. .+...+-......+. +..
T Consensus 10 ~~~~~~k~~i~~~L~~-~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~ 78 (237)
T PF00682_consen 10 AFSTEEKLEIAKALDE-AGVDYIEVG---FPFASEDDFEQVRRLREALPNA-------RLQALCRANEEDIERAVEAAKE 78 (237)
T ss_dssp T--HHHHHHHHHHHHH-HTTSEEEEE---HCTSSHHHHHHHHHHHHHHHSS-------EEEEEEESCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH-hCCCEEEEc---ccccCHHHHHHhhhhhhhhccc-------ccceeeeehHHHHHHHHHhhHh
Confidence 4677777777776554 378877776 3566643 344444444432 222222222111222 222
Q ss_pred cCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-
Q 023640 121 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV- 199 (279)
Q Consensus 121 ~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~- 199 (279)
.+ ...+.+.+.. ++...+...........+.+.+.+ +++++.|..+.+...-. ..-+.+.+.++++.+.+.|+.
T Consensus 79 ~g-~~~i~i~~~~-s~~~~~~~~~~~~~~~~~~~~~~v-~~ak~~g~~v~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~ 153 (237)
T PF00682_consen 79 AG-IDIIRIFISV-SDLHIRKNLNKSREEALERIEEAV-KYAKELGYEVAFGCEDA--SRTDPEELLELAEALAEAGADI 153 (237)
T ss_dssp TT-SSEEEEEEET-SHHHHHHHTCSHHHHHHHHHHHHH-HHHHHTTSEEEEEETTT--GGSSHHHHHHHHHHHHHHT-SE
T ss_pred cc-CCEEEecCcc-cHHHHHHhhcCCHHHHHHHHHHHH-HHHHhcCCceEeCcccc--ccccHHHHHHHHHHHHHcCCeE
Confidence 22 2223444332 343333222111111234444444 55567788886654432 233678899999999888876
Q ss_pred EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCC-eE--EEecccccc
Q 023640 200 VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN-IR--TTVRKQMGQ 245 (279)
Q Consensus 200 i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g-i~--v~vr~~~g~ 245 (279)
+.+-.- ....+++++.++.+.+++..+ +. +...+..|.
T Consensus 154 i~l~Dt--------~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gl 194 (237)
T PF00682_consen 154 IYLADT--------VGIMTPEDVAELVRALREALPDIPLGFHAHNDLGL 194 (237)
T ss_dssp EEEEET--------TS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-
T ss_pred EEeeCc--------cCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccc
Confidence 544311 122467777777777764444 44 444455543
No 191
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=54.00 E-value=1.5e+02 Score=25.92 Aligned_cols=161 Identities=14% Similarity=0.106 Sum_probs=82.5
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEec----CCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCc-hhhhH-HH--
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMG----MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGI-VHAIN-KF-- 118 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG----~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~-~~~~~-~l-- 118 (279)
-.++++|+++.+.+..+. |...|.+.. .|.|++.++.+.++++.+++.. +.+.+.++|.+. ..+.+ ++
T Consensus 21 lP~tpeEia~~A~~c~~A-GAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~---pd~iv~~Ttg~~~~~~~~~R~~~ 96 (272)
T PF05853_consen 21 LPITPEEIAADAVACYEA-GAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAAC---PDLIVQPTTGGGGGPDPEERLAH 96 (272)
T ss_dssp S--SHHHHHHHHHHHHHH-TESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHS---TTSEEEEESSTTTTSGHHHHCTH
T ss_pred CCCCHHHHHHHHHHHHHc-CCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHC---CCeEEEeCCCCCCCCCHHHHHHH
Confidence 357899999999886543 444444432 2899999999999999999872 237888888883 22211 11
Q ss_pred hcc-CCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCC
Q 023640 119 HSD-LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 197 (279)
Q Consensus 119 ~~~-~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~ 197 (279)
... .+ ....+++-+.+-....... ..+.+.+.+.+ +.+++.|+...+. +. +..++..+..++++ |
T Consensus 97 v~~~~p-d~asl~~gs~n~~~~~~~~----~n~~~~~~~~~-~~~~e~Gi~pe~e--v~-----d~~~l~~~~~l~~~-G 162 (272)
T PF05853_consen 97 VEAWKP-DMASLNPGSMNFGTRDRVY----INTPADARELA-RRMRERGIKPEIE--VF-----DPGHLRNARRLIEK-G 162 (272)
T ss_dssp HHHH---SEEEEE-S-EEESGGCSEE-------HHHHHHHH-HHHHHTT-EEEEE--ES-----SHHHHHHHHHHHHT-T
T ss_pred HHhcCC-CeEEecccccccccCCcee----cCCHHHHHHHH-HHHHHcCCeEEEE--EE-----cHHHHHHHHHHHHC-C
Confidence 111 11 1112222221111111111 12455555655 5566777766654 33 45677777666654 3
Q ss_pred c-----EEEEEecCCCCCCCCcCCCCHHHHHHHHHHHH
Q 023640 198 V-----VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 230 (279)
Q Consensus 198 ~-----~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~ 230 (279)
. .++++.-.+ ... +++.+.+..+.+.+.
T Consensus 163 ~l~~p~~~~~vlG~~----~g~-~~~~~~l~~~l~~l~ 195 (272)
T PF05853_consen 163 LLPGPLLVNFVLGVP----GGM-PATPENLLAMLDMLP 195 (272)
T ss_dssp SS-SSEEEEEEES-T----TS---S-HHHHHHHHHHHH
T ss_pred CCCCCeEEEEcccCC----CCC-CCCHHHHHHHHHhcC
Confidence 2 244433122 222 578888999988887
No 192
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=53.50 E-value=86 Score=24.39 Aligned_cols=56 Identities=9% Similarity=0.208 Sum_probs=39.3
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEc
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVST 108 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~T 108 (279)
..++.+++...+.+......-..|.+.+ +.-..++.+.+++..+++.|+ .++.+.|
T Consensus 79 ~~v~~~~L~~~L~~~~~~~~~~~V~I~a--D~~~~~~~vv~vmd~l~~aG~----~~v~l~t 134 (141)
T PRK11267 79 DPVTDETMITALDALTEGKKDTTIFFRA--DKTVDYETLMKVMDTLHQAGY----LKIGLVG 134 (141)
T ss_pred ccccHHHHHHHHHHHHhcCCCceEEEEc--CCCCCHHHHHHHHHHHHHcCC----CeEEEEe
Confidence 4566777777777654321223466666 666778899999999999984 5788877
No 193
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=52.31 E-value=51 Score=28.65 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=37.5
Q ss_pred CcCCCCHHHHHHHHHHHHhcCCe------EEEeccccccccccccccccccCcCc
Q 023640 213 QFRTSSDDKVSSFQKILRGSYNI------RTTVRKQMGQDISGACGQLVVNLPDK 261 (279)
Q Consensus 213 ~~~~~~~e~l~~~~~~l~~~~gi------~v~vr~~~g~~~~~~cg~~~~~~~~~ 261 (279)
+|+....+++..|.+.++ ..|+ +..|++..+..--.+||.++++.|-.
T Consensus 194 WYPik~r~~~~~f~~~L~-~~~i~kiL~iEL~VrP~~d~~gm~gSGMivINPPwt 247 (279)
T COG2961 194 WYPIKDRRQIRRFLRALE-ALGIRKILQIELAVRPDSDPRGMNGSGMIVINPPWT 247 (279)
T ss_pred EEeecchHHHHHHHHHHh-hcCccceeeeEEEecCCCCCCCccceeEEEECCCcc
Confidence 455567899999999999 7776 45677666666678999999999954
No 194
>PRK09389 (R)-citramalate synthase; Provisional
Probab=52.09 E-value=2.2e+02 Score=27.27 Aligned_cols=179 Identities=12% Similarity=0.036 Sum_probs=95.0
Q ss_pred CccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhccCCC
Q 023640 45 FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPG 124 (279)
Q Consensus 45 ~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~~~~~ 124 (279)
....++.++-++.+..+.+ .|++.|-+.. |...... .+.++.+.+.+. ...+...+-+...+++...+.+ .
T Consensus 17 ~g~~~s~e~K~~ia~~L~~-~Gv~~IE~G~---p~~~~~d-~e~v~~i~~~~~---~~~i~a~~r~~~~di~~a~~~g-~ 87 (488)
T PRK09389 17 PGVSLTPEEKLEIARKLDE-LGVDVIEAGS---AITSEGE-REAIKAVTDEGL---NAEICSFARAVKVDIDAALECD-V 87 (488)
T ss_pred CCCCcCHHHHHHHHHHHHH-cCCCEEEEeC---CcCCHHH-HHHHHHHHhcCC---CcEEEeecccCHHHHHHHHhCC-c
Confidence 3456888988888887665 4788776633 5565443 467777776542 1333333333333344444433 1
Q ss_pred ceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEE
Q 023640 125 LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLI 203 (279)
Q Consensus 125 ~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~ 203 (279)
..+.+.+...+......+ +......++.+.+.+ +++++.|..+.+...- ..-.+.+.+.++++.+.+.|+. +.+-
T Consensus 88 ~~v~i~~~~Sd~h~~~~l-~~s~~e~l~~~~~~v-~~ak~~g~~v~~~~ed--~~r~~~~~l~~~~~~~~~~Ga~~i~l~ 163 (488)
T PRK09389 88 DSVHLVVPTSDLHIEYKL-KKTREEVLETAVEAV-EYAKDHGLIVELSGED--ASRADLDFLKELYKAGIEAGADRICFC 163 (488)
T ss_pred CEEEEEEccCHHHHHHHh-CCCHHHHHHHHHHHH-HHHHHCCCEEEEEEee--CCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 224455533323222222 222223345555555 5666677766665432 3334567788888888888775 4442
Q ss_pred ecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEE--eccccc
Q 023640 204 PFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT--VRKQMG 244 (279)
Q Consensus 204 ~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~--vr~~~g 244 (279)
. ......++++.++.+.+++..++.+. ..+..|
T Consensus 164 ---D-----TvG~~~P~~~~~lv~~l~~~~~v~l~~H~HND~G 198 (488)
T PRK09389 164 ---D-----TVGILTPEKTYELFKRLSELVKGPVSIHCHNDFG 198 (488)
T ss_pred ---c-----CCCCcCHHHHHHHHHHHHhhcCCeEEEEecCCcc
Confidence 1 11234667777776666533344433 344443
No 195
>TIGR00666 PBP4 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family. In E. coli, this protein is known as penicillin binding protein 4 (dacB). A signal sequence is cleaved from a precursor form. The protein is described as periplasmic in E. coli (Gram-negative) and extracellular in Actinomadura R39 (Gram-positive). Unlike some other proteins with similar activity, it does not form transpeptidation. It is not essential for viability. This family is related to class A beta-lactamases.
Probab=50.83 E-value=22 Score=32.42 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=26.2
Q ss_pred ceEEEecCCccccCHHHHHHHHHHHhCCCC
Q 023640 68 RNVVFMGMGEPLNNYAALVEAVRIMTGLPF 97 (279)
Q Consensus 68 ~~I~fsG~GEPll~~~~i~~~i~~~~~~g~ 97 (279)
..+.+.|.|+|+|..+.+.++++.+++.|+
T Consensus 55 G~L~i~G~GDP~L~~~~L~~la~~l~~~Gi 84 (345)
T TIGR00666 55 GNLVLRFGGDPTLKRQDIRNLVATLKKSGV 84 (345)
T ss_pred ccEEEEeecCCCcCHHHHHHHHHHHHHcCC
Confidence 467787889999999999999999999884
No 196
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=50.56 E-value=22 Score=24.21 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHHhhCCcEEEEEecCCCC-CCCCcC-CCCHHHHHHHHHHHHhcCCeEE
Q 023640 182 EEQHAHQLGKLLETFQVVVNLIPFNPIG-SVSQFR-TSSDDKVSSFQKILRGSYNIRT 237 (279)
Q Consensus 182 ~~~~l~~l~~~l~~~~~~i~l~~~~p~~-~~~~~~-~~~~e~l~~~~~~l~~~~gi~v 237 (279)
+..+.-++-+.+++.|....++|.++.- .+.++. ..+.++.+.+.+.++ +.++.+
T Consensus 10 st~~a~~~ek~lk~~gi~~~liP~P~~i~~~CG~al~~~~~d~~~i~~~l~-~~~i~~ 66 (73)
T PF11823_consen 10 STHDAMKAEKLLKKNGIPVRLIPTPREISAGCGLALRFEPEDLEKIKEILE-ENGIEY 66 (73)
T ss_pred CHHHHHHHHHHHHHCCCcEEEeCCChhccCCCCEEEEEChhhHHHHHHHHH-HCCCCe
Confidence 4556677777788777777777666531 222222 346778888888888 667654
No 197
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=49.94 E-value=82 Score=23.15 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEEec
Q 023640 184 QHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 240 (279)
Q Consensus 184 ~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~vr 240 (279)
..+++.++.+...|++ |.++|+.-....+-......++-..-+..++ ..|+.|...
T Consensus 42 P~i~~~l~~l~~~G~~~i~lvPl~L~~G~H~~~Dipge~~~SW~~~l~-~~g~~v~~~ 98 (103)
T cd03413 42 PGLDDVLAKLKKAGIKKVTLMPLMLVAGDHAHNDMAGDEPDSWKSILE-AAGIKVETV 98 (103)
T ss_pred CCHHHHHHHHHHcCCCEEEEEehhheecccchhcCCCCCchhHHHHHH-HCCCeeEEE
Confidence 4577777777777775 8889976542222222222233446677788 778876543
No 198
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=49.55 E-value=46 Score=27.99 Aligned_cols=55 Identities=24% Similarity=0.224 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCc
Q 023640 49 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGI 111 (279)
Q Consensus 49 ~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~ 111 (279)
...+++.+.+.+.... +-+.+.++. |+|++. ....++++.+++.| ..+.+..+-+
T Consensus 55 ~~~~~~~~~i~~~~~~-g~~V~~L~~-GDP~~~-~~~~~l~~~~~~~g-----~~veviPGiS 109 (229)
T TIGR01465 55 MSLEEIVDIMSDAHRE-GKLVVRLHT-GDPSIY-GAIAEQMQLLEALG-----IPYEVVPGVS 109 (229)
T ss_pred CCHHHHHHHHHHHHHC-CCeEEEEeC-cCcccc-ccHHHHHHHHHHCC-----CCEEEECChh
Confidence 3456777777654432 335667777 999995 66677888888777 5677776544
No 199
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=48.99 E-value=41 Score=31.23 Aligned_cols=75 Identities=7% Similarity=0.160 Sum_probs=37.5
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC-ch-------------
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG-IV------------- 112 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG-~~------------- 112 (279)
..++.+++++.+.+..+. |++.+++.- | ++ .+.++.+++.+ ..+.|.+-| .+
T Consensus 134 ~~~t~d~~~~~ie~qa~~-GVDfmtiH~-g---it----~~~~~~~~~~~-----R~~giVSRGGs~l~~WM~~n~~ENP 199 (420)
T PF01964_consen 134 VDMTEDDFFDVIEKQAKD-GVDFMTIHC-G---IT----RETLERLKKSG-----RIMGIVSRGGSILAAWMLHNGKENP 199 (420)
T ss_dssp GG--HHHHHHHHHHHHHH-T--EEEE-T-T---------GGGGGGGT--T-----SSS----HHHHHHHHHHHHHTS--H
T ss_pred hhCCHHHHHHHHHHHHHc-CCCEEEEcc-c---hh----HHHHHHHhhhc-----cccCccccchHHHHHHHHhcCCcCc
Confidence 568999999999987764 888888887 6 43 24555565443 334444444 21
Q ss_pred --hhhHHHhccCCCceEEEEe-CCCC
Q 023640 113 --HAINKFHSDLPGLNLAVSL-HAPV 135 (279)
Q Consensus 113 --~~~~~l~~~~~~~~i~iSl-d~~~ 135 (279)
...+++++.....|+++|| |+..
T Consensus 200 ly~~fD~lLeI~k~yDVtLSLGDglR 225 (420)
T PF01964_consen 200 LYEHFDRLLEIAKEYDVTLSLGDGLR 225 (420)
T ss_dssp HHHTHHHHHHHHTTTT-EEEE--TT-
T ss_pred HHHhHHHHHHHHHHhCeeEecccccC
Confidence 1234455544567899999 6543
No 200
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=48.54 E-value=1.4e+02 Score=26.38 Aligned_cols=90 Identities=16% Similarity=0.235 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcC
Q 023640 154 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 233 (279)
Q Consensus 154 i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~ 233 (279)
+.+.+++.++++..-+.| ||.-++ +.+-+.+|.+...+.+|-|.++ .+...+..|.+..+ +.
T Consensus 135 IKE~vR~~I~~A~kVIAI---VMD~FT-D~dIf~DLleAa~kR~VpVYiL-------------LD~~~~~~Fl~Mc~-~~ 196 (284)
T PF07894_consen 135 IKEVVRRMIQQAQKVIAI---VMDVFT-DVDIFCDLLEAANKRGVPVYIL-------------LDEQNLPHFLEMCE-KL 196 (284)
T ss_pred HHHHHHHHHHHhcceeEE---Eeeccc-cHHHHHHHHHHHHhcCCcEEEE-------------echhcChHHHHHHH-HC
Confidence 334444556666554443 233233 3566777777766667766654 23334455666666 44
Q ss_pred Ce------EEEeccccccccccccc-cccccCcCc
Q 023640 234 NI------RTTVRKQMGQDISGACG-QLVVNLPDK 261 (279)
Q Consensus 234 gi------~v~vr~~~g~~~~~~cg-~~~~~~~~~ 261 (279)
++ +..||...|...+...| .+....-+|
T Consensus 197 ~v~~~~~~nmrVRsv~G~~y~~rsg~k~~G~~~eK 231 (284)
T PF07894_consen 197 GVNLQHLKNMRVRSVTGCTYYSRSGKKFKGQLKEK 231 (284)
T ss_pred CCChhhcCCeEEEEecCCeeecCCCCeeeCcccce
Confidence 43 46788888999888888 444444333
No 201
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=48.25 E-value=92 Score=27.67 Aligned_cols=77 Identities=10% Similarity=0.155 Sum_probs=38.2
Q ss_pred cHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHH-HHHHhcCCeEEEeccccccccccccccccc-cC
Q 023640 182 EEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQ-KILRGSYNIRTTVRKQMGQDISGACGQLVV-NL 258 (279)
Q Consensus 182 ~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~-~~l~~~~gi~v~vr~~~g~~~~~~cg~~~~-~~ 258 (279)
+.++..++++..++.|+. +-+ ..|. |..++.+++..+. .+.+ ..++++.+-+..|.++.+..-.-+. .+
T Consensus 86 ~t~~~i~~~~~a~~~Gadav~~--~pP~-----y~~~~~~~i~~~f~~va~-~~~lpi~lYn~~g~~l~~~~l~~L~~~~ 157 (303)
T PRK03620 86 GTAQAIEYAQAAERAGADGILL--LPPY-----LTEAPQEGLAAHVEAVCK-STDLGVIVYNRDNAVLTADTLARLAERC 157 (303)
T ss_pred CHHHHHHHHHHHHHhCCCEEEE--CCCC-----CCCCCHHHHHHHHHHHHH-hCCCCEEEEcCCCCCCCHHHHHHHHhhC
Confidence 455666777777777765 322 2332 1123445444433 3444 5566665555445555444333333 55
Q ss_pred cCccCCCC
Q 023640 259 PDKISAKS 266 (279)
Q Consensus 259 ~~~~~~~~ 266 (279)
|.-+.-|.
T Consensus 158 pni~giK~ 165 (303)
T PRK03620 158 PNLVGFKD 165 (303)
T ss_pred CCEEEEEe
Confidence 55444443
No 202
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=47.83 E-value=2.9e+02 Score=27.29 Aligned_cols=162 Identities=10% Similarity=0.103 Sum_probs=87.7
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecCCcc------ccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC-----ch--h
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEP------LNNYAALVEAVRIMTGLPFQVSPKRITVSTVG-----IV--H 113 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEP------ll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG-----~~--~ 113 (279)
..++.++.+..+..+.+ .|+..|-++| |.= +++. .-.+.++.+++.. ++..+.+...| +. +
T Consensus 21 tr~~t~d~l~ia~~l~~-~G~~~iE~~g-gatfd~~~rfl~e-dp~e~l~~l~~~~---~~~~l~~l~Rg~N~~gy~~yp 94 (592)
T PRK09282 21 TRMRTEDMLPIAEKLDK-VGFWSLEVWG-GATFDVCIRYLNE-DPWERLRKLKKAL---PNTPLQMLLRGQNLVGYRHYP 94 (592)
T ss_pred ccCCHHHHHHHHHHHHH-cCCCEEEecC-CccchhhcccCCc-cHHHHHHHHHHhC---CCCEEEEEecccccccccccc
Confidence 46788888888877665 3888999988 743 4553 3345666666541 12455554443 11 1
Q ss_pred h------hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHH
Q 023640 114 A------INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAH 187 (279)
Q Consensus 114 ~------~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~ 187 (279)
+ .+...+. .+++.--+++.++ ...+..++ +++++.|..+........+-..+.+.+.
T Consensus 95 d~vv~~~v~~A~~~--Gvd~irif~~lnd--------------~~n~~~~i-~~ak~~G~~v~~~i~~t~~p~~t~~~~~ 157 (592)
T PRK09282 95 DDVVEKFVEKAAEN--GIDIFRIFDALND--------------VRNMEVAI-KAAKKAGAHVQGTISYTTSPVHTIEKYV 157 (592)
T ss_pred chhhHHHHHHHHHC--CCCEEEEEEecCh--------------HHHHHHHH-HHHHHcCCEEEEEEEeccCCCCCHHHHH
Confidence 1 1122222 2343211122222 13445556 5566777766544332222234578888
Q ss_pred HHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEEe
Q 023640 188 QLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 239 (279)
Q Consensus 188 ~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~v 239 (279)
++++.+.+.|+. +.+- .. .....++++.++.+.+++..++++.+
T Consensus 158 ~~a~~l~~~Gad~I~i~---Dt-----~G~~~P~~~~~lv~~lk~~~~~pi~~ 202 (592)
T PRK09282 158 ELAKELEEMGCDSICIK---DM-----AGLLTPYAAYELVKALKEEVDLPVQL 202 (592)
T ss_pred HHHHHHHHcCCCEEEEC---Cc-----CCCcCHHHHHHHHHHHHHhCCCeEEE
Confidence 899888888876 4442 11 11246777777777776445554433
No 203
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=47.82 E-value=1.9e+02 Score=25.21 Aligned_cols=181 Identities=10% Similarity=0.043 Sum_probs=91.1
Q ss_pred ccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEc----CCch-h---hhHH
Q 023640 46 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVST----VGIV-H---AINK 117 (279)
Q Consensus 46 ~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~T----NG~~-~---~~~~ 117 (279)
...++.++.++.+..+.+ .|++.|-+.- |..+++. .+.++.+.+.+. +...+.... .+.. + .++.
T Consensus 14 ~~~~s~e~k~~i~~~L~~-~Gv~~IE~G~---~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~ 86 (273)
T cd07941 14 GISFSVEDKLRIARKLDE-LGVDYIEGGW---PGSNPKD-TEFFARAKKLKL--KHAKLAAFGSTRRAGVKAEEDPNLQA 86 (273)
T ss_pred CCCCCHHHHHHHHHHHHH-cCCCEEEecC---CcCCHHH-HHHHHHHHHcCC--CCcEEEEEecccccCCCccchHHHHH
Confidence 456788888888877665 4888888732 4566443 456666655431 011222111 1111 0 1222
Q ss_pred HhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEe-CCCCCcHHHHHHHHHHHhhC
Q 023640 118 FHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIML-DGVNDEEQHAHQLGKLLETF 196 (279)
Q Consensus 118 l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~-~g~nd~~~~l~~l~~~l~~~ 196 (279)
..+.+ ...+.+.+.+.+......+ +......++.+.+.+ +++++.|..+.+..+.. .+.-.+.+.+.++++.+.+.
T Consensus 87 a~~~g-~~~i~i~~~~sd~~~~~~~-~~~~~~~~~~~~~~i-~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 163 (273)
T cd07941 87 LLEAG-TPVVTIFGKSWDLHVTEAL-GTTLEENLAMIRDSV-AYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEA 163 (273)
T ss_pred HHhCC-CCEEEEEEcCCHHHHHHHc-CCCHHHHHHHHHHHH-HHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhC
Confidence 33322 2234454433222222222 111122345555555 45666787776653322 22223467778888888877
Q ss_pred CcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCC-eEE--Eeccccc
Q 023640 197 QVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN-IRT--TVRKQMG 244 (279)
Q Consensus 197 ~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g-i~v--~vr~~~g 244 (279)
|+. +.+- . .....+++++.++.+.+++..+ +++ ......|
T Consensus 164 g~~~i~l~--D------T~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~G 207 (273)
T cd07941 164 GADWLVLC--D------TNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSG 207 (273)
T ss_pred CCCEEEEe--c------CCCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCC
Confidence 776 4332 1 1223567778888777774444 433 4444444
No 204
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=47.58 E-value=1e+02 Score=27.05 Aligned_cols=76 Identities=12% Similarity=0.169 Sum_probs=40.9
Q ss_pred cHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHH-HHHHHhcCCeEEEeccc---cccccccccccccc
Q 023640 182 EEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSF-QKILRGSYNIRTTVRKQ---MGQDISGACGQLVV 256 (279)
Q Consensus 182 ~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~-~~~l~~~~gi~v~vr~~---~g~~~~~~cg~~~~ 256 (279)
+.++..++++..++.|+. +-++ .|. .+ .++.+++.++ ..+.+ ..++++.+.+. .|.++.+..-.-+.
T Consensus 78 s~~~~i~~a~~a~~~Gad~v~v~--pP~----y~-~~~~~~i~~~~~~i~~-~~~~pi~lYn~P~~tg~~l~~~~l~~L~ 149 (285)
T TIGR00674 78 ATEEAISLTKFAEDVGADGFLVV--TPY----YN-KPTQEGLYQHFKAIAE-EVDLPIILYNVPSRTGVSLYPETVKRLA 149 (285)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEc--CCc----CC-CCCHHHHHHHHHHHHh-cCCCCEEEEECcHHhcCCCCHHHHHHHH
Confidence 556777888888888876 4433 232 12 2345555444 44445 55666655542 25555544444444
Q ss_pred cCcCccCCC
Q 023640 257 NLPDKISAK 265 (279)
Q Consensus 257 ~~~~~~~~~ 265 (279)
.+|.-+..|
T Consensus 150 ~~~~v~giK 158 (285)
T TIGR00674 150 EEPNIVAIK 158 (285)
T ss_pred cCCCEEEEE
Confidence 566544444
No 205
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=47.31 E-value=2e+02 Score=25.30 Aligned_cols=182 Identities=10% Similarity=0.072 Sum_probs=89.0
Q ss_pred ccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHH---HHHHHHHHHhCCCCCCCCCe-EEEEcCCchhhhHHHhcc
Q 023640 46 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYA---ALVEAVRIMTGLPFQVSPKR-ITVSTVGIVHAINKFHSD 121 (279)
Q Consensus 46 ~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~---~i~~~i~~~~~~g~~~~~~~-v~i~TNG~~~~~~~l~~~ 121 (279)
+..++.++-++.+..+....|++.|-+.- |-.+++ .+.++.+..+..+. ..... +.+.-| ...++...+.
T Consensus 13 ~~~~s~e~K~~i~~~L~~~~Gv~~IEvg~---~~~s~~e~~av~~~~~~~~~~~~-~~~~~~~a~~~~--~~~~~~A~~~ 86 (280)
T cd07945 13 GVSFSPSEKLNIAKILLQELKVDRIEVAS---ARVSEGEFEAVQKIIDWAAEEGL-LDRIEVLGFVDG--DKSVDWIKSA 86 (280)
T ss_pred CCccCHHHHHHHHHHHHHHhCCCEEEecC---CCCCHHHHHHHHHHHHHhhhhcc-ccCcEEEEecCc--HHHHHHHHHC
Confidence 45678888888887753334788777754 656663 33333332211110 00011 122222 1123332332
Q ss_pred CCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeC-CCCCcHHHHHHHHHHHhhCCcE-
Q 023640 122 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLD-GVNDEEQHAHQLGKLLETFQVV- 199 (279)
Q Consensus 122 ~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~-g~nd~~~~l~~l~~~l~~~~~~- 199 (279)
+ ...+.+.+-+.+......+. ......++.+.+.+ +++++.|..+.+...-.. .+..+++.+.++++.+.+.|+.
T Consensus 87 g-~~~i~i~~~~S~~h~~~~~~-~t~~e~l~~~~~~i-~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~~ 163 (280)
T cd07945 87 G-AKVLNLLTKGSLKHCTEQLR-KTPEEHFADIREVI-EYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIKR 163 (280)
T ss_pred C-CCEEEEEEeCCHHHHHHHHC-cCHHHHHHHHHHHH-HHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCE
Confidence 2 22344555332223333331 12223345555555 555666766655544211 1234678899999998888876
Q ss_pred EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcC-CeE--EEeccccc
Q 023640 200 VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY-NIR--TTVRKQMG 244 (279)
Q Consensus 200 i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~-gi~--v~vr~~~g 244 (279)
+.+- . .....+++++.++.+.+++.+ +++ +...+..|
T Consensus 164 i~l~---D-----T~G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~G 203 (280)
T cd07945 164 IMLP---D-----TLGILSPFETYTYISDMVKRYPNLHFDFHAHNDYD 203 (280)
T ss_pred EEec---C-----CCCCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCC
Confidence 5442 1 112245667777777666333 233 34444444
No 206
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=47.01 E-value=2.1e+02 Score=25.54 Aligned_cols=119 Identities=11% Similarity=0.142 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhCC--CCCCCCCeEEEEcCCchhhhHHHhccCCCceEEEEeC-CCCHHHHhhhcCCCCCCCHHHHHHHHH
Q 023640 83 AALVEAVRIMTGL--PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH-APVQDVRCQIMPAARAFPLEKLMNALK 159 (279)
Q Consensus 83 ~~i~~~i~~~~~~--g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~~i~iSld-~~~~~~~~~i~~~~~~~~~~~i~~~l~ 159 (279)
++|.++++.++++ ...+....+.+--+|..-.++++...+ .|+ |+|| +.++...++
T Consensus 231 PYl~~I~~~Vk~rl~~~~~~~vPmi~fakG~g~~Le~l~~tG--~DV-vgLDWTvdp~ear~------------------ 289 (359)
T KOG2872|consen 231 PYLRQIAEAVKKRLPELGLAPVPMILFAKGSGGALEELAQTG--YDV-VGLDWTVDPAEARR------------------ 289 (359)
T ss_pred HHHHHHHHHHHHhhhhhcCCCCceEEEEcCcchHHHHHHhcC--CcE-EeecccccHHHHHH------------------
Confidence 4566677666654 212333466667777654466777764 454 4665 334332222
Q ss_pred HHHHhhCCeEEEEEEEeCC-CCCcHHHHHHHHH-HHhhCCcEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHH
Q 023640 160 EYQKNSQQKIFIEYIMLDG-VNDEEQHAHQLGK-LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 230 (279)
Q Consensus 160 ~~~~~~~~~v~i~~vv~~g-~nd~~~~l~~l~~-~l~~~~~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~ 230 (279)
..|.++.++--+-|+ +..+.+.+.+.++ .+++.|.+-+++-+.. .-.+..+.+.+.-|.+.+.
T Consensus 290 ----~~g~~VtlQGNlDP~~ly~s~e~it~~v~~mv~~fG~~ryI~NLGH----Gi~p~tp~e~v~~f~E~~h 354 (359)
T KOG2872|consen 290 ----RVGNRVTLQGNLDPGVLYGSKEEITQLVKQMVKDFGKSRYIANLGH----GITPGTPPEHVAHFVEAVH 354 (359)
T ss_pred ----hhCCceEEecCCChHHhcCCHHHHHHHHHHHHHHhCccceEEecCC----CCCCCCCHHHHHHHHHHHH
Confidence 234445554444443 1224555655443 3344554322221111 1223356777777777766
No 207
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=46.55 E-value=2.1e+02 Score=25.39 Aligned_cols=131 Identities=15% Similarity=0.117 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecC-Cc-cccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhh--hHHHhcc
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHA--INKFHSD 121 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~~~i~~~~~~-g~~~~~~~v~i~TNG~~~~--~~~l~~~ 121 (279)
..++.+.+.+.+..+... |++.|.+.|. || |+|..++-.++++.+.+. +-+.+ ....+.+|.+... +.+.++.
T Consensus 20 g~vD~~a~~~lv~~li~~-Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvp-viaG~g~~~t~eai~lak~a~~ 97 (299)
T COG0329 20 GSVDEEALRRLVEFLIAA-GVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVP-VIAGVGSNSTAEAIELAKHAEK 97 (299)
T ss_pred CCcCHHHHHHHHHHHHHc-CCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCc-EEEecCCCcHHHHHHHHHHHHh
Q ss_pred CCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCe-EEEEEEEeCCCCCcHHHHHHHHH
Q 023640 122 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGK 191 (279)
Q Consensus 122 ~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~-v~i~~vv~~g~nd~~~~l~~l~~ 191 (279)
.+...+.+---.... .+.+.+.+-.+..+...+.+ +..++.-.-+.+.+.+.+.++++
T Consensus 98 ~Gad~il~v~PyY~k------------~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~ 156 (299)
T COG0329 98 LGADGILVVPPYYNK------------PSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAE 156 (299)
T ss_pred cCCCEEEEeCCCCcC------------CChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc
No 208
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=46.55 E-value=62 Score=27.98 Aligned_cols=53 Identities=13% Similarity=0.056 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 023640 49 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 109 (279)
Q Consensus 49 ~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TN 109 (279)
.+.+++++.+.+.... +-+.+.++. |+|++. .....+++.+.+.+ ..+.+...
T Consensus 64 ~~~~~i~~~i~~~~~~-g~~Vv~L~s-GDP~~y-g~~~~l~~~l~~~~-----i~veiiPG 116 (257)
T PRK15473 64 LHLEQIIDLMEAGVKA-GKTVVRLQT-GDVSLY-GSIREQGEELTKRG-----IDFQVVPG 116 (257)
T ss_pred CCHHHHHHHHHHHHHC-CCeEEEEeC-cCchhh-hhHHHHHHHHHHCC-----CCEEEeCC
Confidence 4567777777765432 345667777 999994 77778888887776 45666643
No 209
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=46.46 E-value=82 Score=24.04 Aligned_cols=75 Identities=9% Similarity=0.103 Sum_probs=52.3
Q ss_pred HHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEE-ecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeE
Q 023640 160 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLI-PFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIR 236 (279)
Q Consensus 160 ~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~-~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~ 236 (279)
+.+++.|-.+.+.-++--.+.|.+..+..+++.+.+.+.++..+ .|... ..+-.-....+++.+..+.|+ ..|+.
T Consensus 57 ~~Lee~gF~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~e-k~KAlli~r~ed~d~~~~aLe-d~gi~ 132 (142)
T COG4747 57 SVLEEAGFTVRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTE-KQKALLIVRVEDIDRAIKALE-DAGIK 132 (142)
T ss_pred HHHHHCCcEEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeec-CceEEEEEEhhHHHHHHHHHH-HcCCe
Confidence 45667787777776665566778888999999999877664332 33332 122333457899999999999 78875
No 210
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=46.44 E-value=22 Score=20.07 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=11.4
Q ss_pred CeEEEEcCCchhhhHH
Q 023640 102 KRITVSTVGIVHAINK 117 (279)
Q Consensus 102 ~~v~i~TNG~~~~~~~ 117 (279)
..+.|+|||..+.+.+
T Consensus 5 LqI~ISTnG~sP~la~ 20 (30)
T PF14824_consen 5 LQIAISTNGKSPRLAR 20 (30)
T ss_dssp EEEEEEESSS-HHHHH
T ss_pred eEEEEECCCCChHHHH
Confidence 6899999998775433
No 211
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=46.37 E-value=1.3e+02 Score=27.69 Aligned_cols=152 Identities=18% Similarity=0.209 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHhccCCCceEEEecCCc----cccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhh--------hHH
Q 023640 50 SSGEIVEQLVHASRLSNIRNVVFMGMGE----PLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHA--------INK 117 (279)
Q Consensus 50 ~~~ei~~~i~~~~~~~~~~~I~fsG~GE----Pll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~--------~~~ 117 (279)
+.++..+.+..+.. .|... .||..-- +.-..+.+.++++.+++.| +.+.++-|..... +..
T Consensus 12 ~~~~~~~yi~~a~~-~Gf~~-iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~-----~~v~~Disp~~l~~lg~~~~dl~~ 84 (357)
T PF05913_consen 12 SFEENKAYIEKAAK-YGFKR-IFTSLHIPEDDPEDYLERLKELLKLAKELG-----MEVIADISPKVLKKLGISYDDLSF 84 (357)
T ss_dssp -HHHHHHHHHHHHC-TTEEE-EEEEE---------HHHHHHHHHHHHHHCT------EEEEEE-CCHHHTTT-BTTBTHH
T ss_pred CHHHHHHHHHHHHH-CCCCE-EECCCCcCCCCHHHHHHHHHHHHHHHHHCC-----CEEEEECCHHHHHHcCCCHHHHHH
Confidence 56677777776665 35543 3333222 2233467889999999998 7899999885432 222
Q ss_pred HhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCC
Q 023640 118 FHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 197 (279)
Q Consensus 118 l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~ 197 (279)
+.+.+ ... +-+|.+ .+.+ .+.++.+. |.++.++.-.+ +.+++..|.+.-....
T Consensus 85 ~~~lG-i~~--lRlD~G--------------f~~~----~ia~ls~n-g~~I~LNASti-----~~~~l~~L~~~~~~~~ 137 (357)
T PF05913_consen 85 FKELG-IDG--LRLDYG--------------FSGE----EIAKLSKN-GIKIELNASTI-----TEEELDELIKYGANFS 137 (357)
T ss_dssp HHHHT--SE--EEESSS---------------SCH----HHHHHTTT--SEEEEETTT-------CCHHHHHCCTT--GG
T ss_pred HHHcC-CCE--EEECCC--------------CCHH----HHHHHHhC-CCEEEEECCCC-----ChHHHHHHHHhcCCHH
Confidence 22221 112 333311 1111 11122222 56666553211 2234444433222111
Q ss_pred cEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEEec
Q 023640 198 VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 240 (279)
Q Consensus 198 ~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~vr 240 (279)
--....-|.|. .+...+.+.+.+.-++++ ++|+++..-
T Consensus 138 ~i~a~HNfYPr----~~TGLs~~~f~~~n~~~k-~~gi~~~AF 175 (357)
T PF05913_consen 138 NIIACHNFYPR----PYTGLSEEFFIEKNQLLK-EYGIKTAAF 175 (357)
T ss_dssp GEEEE---B-S----TT-SB-HHHHHHHHHHHH-HTT-EEEEE
T ss_pred HeEEEecccCC----CCCCCCHHHHHHHHHHHH-HCCCcEEEE
Confidence 11333456664 344568999999999999 899986533
No 212
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=45.47 E-value=79 Score=30.20 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEc
Q 023640 49 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVST 108 (279)
Q Consensus 49 ~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~T 108 (279)
+..+++.+.+.+... .|-..+.+.| |+|++ +....+.++.+++.| ..+.+..
T Consensus 64 ~~qe~i~~~l~~~a~-~Gk~VvrL~~-GDP~v-fg~~~ee~~~l~~~g-----i~~eVVP 115 (474)
T PRK07168 64 MRQEMINAHLLQFAK-EGKIVVRLKG-GDPSI-FGRVGEEAETLAAAN-----IPYEIVP 115 (474)
T ss_pred ccHHHHHHHHHHHHh-CCCEEEEEeC-CCchH-HhhHHHHHHHHHhCC-----CCEEEEC
Confidence 344445444444433 2445677889 99999 477777788888766 3455554
No 213
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=45.28 E-value=2.8e+02 Score=26.36 Aligned_cols=161 Identities=11% Similarity=0.075 Sum_probs=86.1
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecCCc------cccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC-----ch--h
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGE------PLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG-----IV--H 113 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GE------Pll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG-----~~--~ 113 (279)
..++.++.+..+..+.+ .|+..|-++| |. -+++.+ =.+.++.+++.. +...+.+...| +. +
T Consensus 21 ~~~~t~dkl~ia~~Ld~-~Gv~~IE~~g-gatf~~~~~f~~e~-p~e~l~~l~~~~---~~~~l~~l~r~~N~~G~~~~p 94 (448)
T PRK12331 21 TRMTTEEMLPILEKLDN-AGYHSLEMWG-GATFDACLRFLNED-PWERLRKIRKAV---KKTKLQMLLRGQNLLGYRNYA 94 (448)
T ss_pred cccCHHHHHHHHHHHHH-cCCCEEEecC-CccchhhhccCCCC-HHHHHHHHHHhC---CCCEEEEEeccccccccccCc
Confidence 46788888888777655 4889999988 75 345422 235556555541 12344433332 21 1
Q ss_pred ------hhHHHhccCCCceE-EEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHH
Q 023640 114 ------AINKFHSDLPGLNL-AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHA 186 (279)
Q Consensus 114 ------~~~~l~~~~~~~~i-~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l 186 (279)
.++...+.+ +++ .+.. +.++. ..+.+.+ +++++.|..+.+.+...-+-..+.+.+
T Consensus 95 ddvv~~~v~~A~~~G--vd~irif~-~lnd~--------------~n~~~~v-~~ak~~G~~v~~~i~~t~~p~~~~~~~ 156 (448)
T PRK12331 95 DDVVESFVQKSVENG--IDIIRIFD-ALNDV--------------RNLETAV-KATKKAGGHAQVAISYTTSPVHTIDYF 156 (448)
T ss_pred hhhHHHHHHHHHHCC--CCEEEEEE-ecCcH--------------HHHHHHH-HHHHHcCCeEEEEEEeecCCCCCHHHH
Confidence 112223322 343 2222 22221 1233455 566777876554333322222356788
Q ss_pred HHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEEe
Q 023640 187 HQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 239 (279)
Q Consensus 187 ~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~v 239 (279)
.++++.+.+.|+. +.+- . .....+++++.++.+.+++..++++.+
T Consensus 157 ~~~a~~l~~~Gad~I~i~---D-----t~G~l~P~~v~~lv~alk~~~~~pi~~ 202 (448)
T PRK12331 157 VKLAKEMQEMGADSICIK---D-----MAGILTPYVAYELVKRIKEAVTVPLEV 202 (448)
T ss_pred HHHHHHHHHcCCCEEEEc---C-----CCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 8999999888876 4442 1 112246777777877777455655444
No 214
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=45.27 E-value=2.4e+02 Score=25.67 Aligned_cols=24 Identities=13% Similarity=0.029 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCC
Q 023640 82 YAALVEAVRIMTGLPFQVSPKRITVSTVG 110 (279)
Q Consensus 82 ~~~i~~~i~~~~~~g~~~~~~~v~i~TNG 110 (279)
.+.+.++++.+++.| +.+.|--|.
T Consensus 109 ~~~v~~vVe~Ak~~g-----~piRIGVN~ 132 (361)
T COG0821 109 KDRVREVVEAAKDKG-----IPIRIGVNA 132 (361)
T ss_pred HHHHHHHHHHHHHcC-----CCEEEeccc
Confidence 456888999999887 455555565
No 215
>PF08576 DUF1764: Eukaryotic protein of unknown function (DUF1764); InterPro: IPR013885 This entry consists of eukaryotic proteins of unknown function, including many hypothetical proteins.
Probab=45.04 E-value=11 Score=27.79 Aligned_cols=12 Identities=25% Similarity=0.791 Sum_probs=9.5
Q ss_pred cCCcCccCcccc
Q 023640 28 QVGCKMGCNFCA 39 (279)
Q Consensus 28 ~~gCNl~C~yC~ 39 (279)
|.-|||.|--|+
T Consensus 91 T~~CPFDC~CCF 102 (102)
T PF08576_consen 91 TPLCPFDCDCCF 102 (102)
T ss_pred CCCCCCcCCCCC
Confidence 345999998885
No 216
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=44.57 E-value=2.2e+02 Score=24.92 Aligned_cols=76 Identities=18% Similarity=0.337 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHH-HHHHHhcCCeEEEecccc---ccccccccccccc
Q 023640 182 EEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSF-QKILRGSYNIRTTVRKQM---GQDISGACGQLVV 256 (279)
Q Consensus 182 ~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~-~~~l~~~~gi~v~vr~~~---g~~~~~~cg~~~~ 256 (279)
+.++..++++..++.|+. +-++| |. .+ .++.+++.++ .+++. ..++++.+.+.. |.++.+..-.-+.
T Consensus 81 st~~~i~~a~~a~~~Gad~v~v~~--P~----~~-~~s~~~l~~y~~~ia~-~~~~pi~iYn~P~~tg~~ls~~~l~~L~ 152 (289)
T PF00701_consen 81 STEEAIELARHAQDAGADAVLVIP--PY----YF-KPSQEELIDYFRAIAD-ATDLPIIIYNNPARTGNDLSPETLARLA 152 (289)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEEE--ST----SS-SCCHHHHHHHHHHHHH-HSSSEEEEEEBHHHHSSTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhcCceEEEEec--cc----cc-cchhhHHHHHHHHHHh-hcCCCEEEEECCCccccCCCHHHHHHHh
Confidence 567788888888888876 44432 32 11 2345554444 44454 667776655433 6566544444444
Q ss_pred cCcCccCCC
Q 023640 257 NLPDKISAK 265 (279)
Q Consensus 257 ~~~~~~~~~ 265 (279)
++|.-+.-|
T Consensus 153 ~~~nv~giK 161 (289)
T PF00701_consen 153 KIPNVVGIK 161 (289)
T ss_dssp TSTTEEEEE
T ss_pred cCCcEEEEE
Confidence 466544444
No 217
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=44.06 E-value=78 Score=22.35 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=31.8
Q ss_pred CCceEEEEeccCCcC--ccCccccCCC-------CCC--ccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHH
Q 023640 18 GPRSTLCISSQVGCK--MGCNFCATGT-------MGF--KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALV 86 (279)
Q Consensus 18 ~~~~~l~i~~~~gCN--l~C~yC~~~~-------~~~--~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ 86 (279)
+.+.++|. .+++ -.|+||..-. ..+ .......++.+.+.+......+-.| |.| |+..-..+.+.
T Consensus 7 ~~~vvvf~---k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v-fi~-g~~iGG~~~l~ 81 (90)
T cd03028 7 ENPVVLFM---KGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQL-YVN-GELVGGCDIVK 81 (90)
T ss_pred cCCEEEEE---cCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE-EEC-CEEEeCHHHHH
Confidence 34667776 4443 3689997611 111 0111223455555544322233344 667 77666555544
Q ss_pred HH
Q 023640 87 EA 88 (279)
Q Consensus 87 ~~ 88 (279)
++
T Consensus 82 ~l 83 (90)
T cd03028 82 EM 83 (90)
T ss_pred HH
Confidence 43
No 218
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=43.57 E-value=74 Score=31.48 Aligned_cols=86 Identities=10% Similarity=0.086 Sum_probs=54.1
Q ss_pred cHHHHHHHHHHHhhCCcE-EEEEecCCCC--C-----CC-CcCC----CCHHHHHHHHHHHHhcCCeEEEec--cccccc
Q 023640 182 EEQHAHQLGKLLETFQVV-VNLIPFNPIG--S-----VS-QFRT----SSDDKVSSFQKILRGSYNIRTTVR--KQMGQD 246 (279)
Q Consensus 182 ~~~~l~~l~~~l~~~~~~-i~l~~~~p~~--~-----~~-~~~~----~~~e~l~~~~~~l~~~~gi~v~vr--~~~g~~ 246 (279)
..+-..+++.+++++|+. |.++|...++ . .. .|.+ =+++++++|.+.+. +.||.|.+- +-+-.+
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH-~~GIgViLD~V~~HF~~ 241 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAH-QAGIGVILDWVPNHFPP 241 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHH-HcCCEEEEEecCCcCCC
Confidence 567788999999999986 9999876443 1 11 1122 26999999999999 889987543 322222
Q ss_pred c----ccccccccccCcCccCCCCCC
Q 023640 247 I----SGACGQLVVNLPDKISAKSTP 268 (279)
Q Consensus 247 ~----~~~cg~~~~~~~~~~~~~~~~ 268 (279)
. ...-|...-.+.|--+.-.+|
T Consensus 242 d~~~L~~fdg~~~~e~~~~~~~~~~~ 267 (628)
T COG0296 242 DGNYLARFDGTFLYEHEDPRRGEHTD 267 (628)
T ss_pred CcchhhhcCCccccccCCcccccCCC
Confidence 2 234444455554444444443
No 219
>PRK11024 colicin uptake protein TolR; Provisional
Probab=42.13 E-value=1.6e+02 Score=22.88 Aligned_cols=55 Identities=13% Similarity=0.190 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 023640 49 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 109 (279)
Q Consensus 49 ~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TN 109 (279)
++.+++...+........-..|.+.+ +.-..++.+.++++.+++.|+ ..+++.|.
T Consensus 85 v~~~~L~~~l~~~~~~~~~~~V~i~a--D~~~~~~~vv~vmd~~k~aG~----~~v~l~t~ 139 (141)
T PRK11024 85 LPEEQVVAEAKSRFKANPKTVFLIGG--AKDVPYDEIIKALNLLHSAGV----KSVGLMTQ 139 (141)
T ss_pred cCHHHHHHHHHHHHhhCCCceEEEEc--CCCCCHHHHHHHHHHHHHcCC----CeEEEEec
Confidence 57777777776653321223466665 566677899999999999984 46777764
No 220
>PRK12677 xylose isomerase; Provisional
Probab=41.77 E-value=2.9e+02 Score=25.57 Aligned_cols=54 Identities=15% Similarity=0.113 Sum_probs=32.5
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecCCcc--ccCHH-----HHHHHHHHHhCCCCCCCCCeEE-EEcCC
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEP--LNNYA-----ALVEAVRIMTGLPFQVSPKRIT-VSTVG 110 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEP--ll~~~-----~i~~~i~~~~~~g~~~~~~~v~-i~TNG 110 (279)
..+++++.++.+.+. |++.|.|.. .++ +-... .+.++-+.+++.| +.+. +++|-
T Consensus 29 ~~~~~~E~v~~~a~~----Gf~gVElh~-~~l~p~~~~~~~~~~~~~~lk~~l~~~G-----L~v~~v~~n~ 90 (384)
T PRK12677 29 PPLDPVEAVHKLAEL----GAYGVTFHD-DDLVPFGATDAERDRIIKRFKKALDETG-----LVVPMVTTNL 90 (384)
T ss_pred CCCCHHHHHHHHHHh----CCCEEEecc-cccCCCCCChhhhHHHHHHHHHHHHHcC-----CeeEEEecCC
Confidence 446677777666543 678899987 533 32211 2566667777778 4444 55663
No 221
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=41.67 E-value=86 Score=29.08 Aligned_cols=69 Identities=20% Similarity=0.278 Sum_probs=45.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEEeccccccccc
Q 023640 173 YIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 248 (279)
Q Consensus 173 ~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~vr~~~g~~~~ 248 (279)
+-++|+ ++.+-++..+..++.+.-+- +-+.|-+|. .++ -+.+.++++.+.++ ++|+.|.--+..|.-++
T Consensus 177 ydlLPe-~~weIDL~~veal~DENT~AivviNP~NPc---GnV--ys~~HL~kiae~A~-klgi~vIaDEVY~~~vf 246 (447)
T KOG0259|consen 177 YDLLPE-KDWEIDLDGVEALADENTVAIVVINPNNPC---GNV--YSEDHLKKIAETAK-KLGIMVIADEVYGHTVF 246 (447)
T ss_pred ecccCc-ccceechHHHHHhhccCeeEEEEeCCCCCC---ccc--ccHHHHHHHHHHHH-HhCCeEEehhhcceeec
Confidence 444666 56666777776666664333 333355554 343 48999999999999 89998766655554444
No 222
>PRK00915 2-isopropylmalate synthase; Validated
Probab=41.24 E-value=3.4e+02 Score=26.21 Aligned_cols=165 Identities=12% Similarity=0.141 Sum_probs=87.8
Q ss_pred ccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhccC---
Q 023640 46 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDL--- 122 (279)
Q Consensus 46 ~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~~~--- 122 (279)
+..+++++-++.+..+.+ .|++.|-+ |=|..++... +.++.+.+.. ....+...+-+...+++...+.+
T Consensus 20 g~~~s~e~K~~ia~~L~~-~Gv~~IE~---G~p~~s~~d~-~~v~~i~~~~---~~~~i~a~~r~~~~did~a~~a~~~~ 91 (513)
T PRK00915 20 GASLTVEEKLQIAKQLER-LGVDVIEA---GFPASSPGDF-EAVKRIARTV---KNSTVCGLARAVKKDIDAAAEALKPA 91 (513)
T ss_pred CCCCCHHHHHHHHHHHHH-cCCCEEEE---cCCCCChHHH-HHHHHHHhhC---CCCEEEEEccCCHHHHHHHHHHhhcC
Confidence 456888888888777664 47887766 3466775543 4556665442 11344444433333343333221
Q ss_pred CCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EE
Q 023640 123 PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VN 201 (279)
Q Consensus 123 ~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~ 201 (279)
....+.+.+...+......+ +......++.+.+.+ +++++.|..+.+... .+.-.+.+.+.++++.+.+.|+. +.
T Consensus 92 ~~~~v~i~~~~Sd~h~~~~l-~~s~~e~l~~~~~~v-~~ak~~g~~v~f~~e--d~~r~d~~~l~~~~~~~~~~Ga~~i~ 167 (513)
T PRK00915 92 EAPRIHTFIATSPIHMEYKL-KMSREEVLEMAVEAV-KYARSYTDDVEFSAE--DATRTDLDFLCRVVEAAIDAGATTIN 167 (513)
T ss_pred CCCEEEEEECCcHHHHHHHh-CCCHHHHHHHHHHHH-HHHHHCCCeEEEEeC--CCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 12234455544333333333 111222344445666 566777776654433 23334567788888888888875 44
Q ss_pred EEecCCCCCCCCcCCCCHHHHHHHHHHHH
Q 023640 202 LIPFNPIGSVSQFRTSSDDKVSSFQKILR 230 (279)
Q Consensus 202 l~~~~p~~~~~~~~~~~~e~l~~~~~~l~ 230 (279)
+- . ......++++.++.+.+.
T Consensus 168 l~---D-----TvG~~~P~~~~~~i~~l~ 188 (513)
T PRK00915 168 IP---D-----TVGYTTPEEFGELIKTLR 188 (513)
T ss_pred Ec---c-----CCCCCCHHHHHHHHHHHH
Confidence 32 1 112245677777766665
No 223
>PRK11113 D-alanyl-D-alanine carboxypeptidase/endopeptidase; Provisional
Probab=41.12 E-value=38 Score=32.36 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=31.6
Q ss_pred eEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCc
Q 023640 69 NVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGI 111 (279)
Q Consensus 69 ~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~ 111 (279)
.+.+-|.|+|+|..+.+.++++.+++.|+.-..-.+.++.+-+
T Consensus 100 dL~i~G~GDPtL~~~~L~~la~~l~~~GI~~I~G~lv~D~s~f 142 (477)
T PRK11113 100 DLIARFGGDPTLTRQDLRNMVATLKKSGVKQIDGNLLIDTSVF 142 (477)
T ss_pred eEEEEEecCCCCCHHHHHHHHHHHHHcCCcEEeeeEEEECccc
Confidence 5777777999999889999999999988532122456665543
No 224
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=40.79 E-value=1.4e+02 Score=23.89 Aligned_cols=88 Identities=8% Similarity=0.015 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhCCeEEEEEEEeCCCCC-------c------HHHHHHHHHHHhhCCcE-EEEEec--CCCCCCCCcC-
Q 023640 153 KLMNALKEYQKNSQQKIFIEYIMLDGVND-------E------EQHAHQLGKLLETFQVV-VNLIPF--NPIGSVSQFR- 215 (279)
Q Consensus 153 ~i~~~l~~~~~~~~~~v~i~~vv~~g~nd-------~------~~~l~~l~~~l~~~~~~-i~l~~~--~p~~~~~~~~- 215 (279)
.-++.+++++++.|..+..-......... . .+.+.+.++..+.+|+. +.+.+. ... ......
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~-~~~~~~~ 105 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSGRYPSG-PEDDTEE 105 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECTTESSS-TTSSHHH
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCcccccc-cCCCHHH
Confidence 33455667777788876544443332221 1 56777777888888876 433322 111 001100
Q ss_pred --CCCHHHHHHHHHHHHhcCCeEEEeccc
Q 023640 216 --TSSDDKVSSFQKILRGSYNIRTTVRKQ 242 (279)
Q Consensus 216 --~~~~e~l~~~~~~l~~~~gi~v~vr~~ 242 (279)
..-.+.+.++.+.++ ++|+.+.+.+.
T Consensus 106 ~~~~~~~~l~~l~~~a~-~~gv~i~lE~~ 133 (213)
T PF01261_consen 106 NWERLAENLRELAEIAE-EYGVRIALENH 133 (213)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTSEEEEE-S
T ss_pred HHHHHHHHHHHHHhhhh-hhcceEEEecc
Confidence 012334445555555 67877766653
No 225
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=40.75 E-value=1.6e+02 Score=25.98 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=12.5
Q ss_pred cCHHHHHHHHHHHhCCC
Q 023640 80 NNYAALVEAVRIMTGLP 96 (279)
Q Consensus 80 l~~~~i~~~i~~~~~~g 96 (279)
++++.+.++++.+.+.|
T Consensus 23 iD~~~l~~li~~l~~~G 39 (296)
T TIGR03249 23 FDEAAYRENIEWLLGYG 39 (296)
T ss_pred cCHHHHHHHHHHHHhcC
Confidence 56677777888777766
No 226
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=40.41 E-value=1.4e+02 Score=23.60 Aligned_cols=56 Identities=18% Similarity=0.121 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhC---CCCCCCCCeEEEEcCCchhh
Q 023640 49 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG---LPFQVSPKRITVSTVGIVHA 114 (279)
Q Consensus 49 ~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~---~g~~~~~~~v~i~TNG~~~~ 114 (279)
...+.+++.-.+.. ..|.|+| |+.--+-|.++++.+++ .+ ....-..|.|.|-..+
T Consensus 64 ~Gi~gvl~~Y~~~~-----~~v~l~G---PT~fapiI~~a~~~a~~~~~~~--~~Y~iLlIlTDG~i~D 122 (146)
T PF07002_consen 64 QGIDGVLEAYRKAL-----PKVQLSG---PTNFAPIINHAAKIAKQSNQNG--QQYFILLILTDGQITD 122 (146)
T ss_pred cCHHHHHHHHHHHh-----hheEECC---CccHHHHHHHHHHHHhhhccCC--ceEEEEEEeccccccc
Confidence 44666666666543 5699999 77755556667777762 22 1124556788885433
No 227
>PF02113 Peptidase_S13: D-Ala-D-Ala carboxypeptidase 3 (S13) family; InterPro: IPR000667 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This family of serine peptidases belong to MEROPS peptidase family S13 (D-Ala-D-Ala carboxypeptidase C, clan SE). The predicted active site residues for members of this family and family S12 occur in the motif SXXK. D-Ala-D-Ala carboxypeptidase C is involved in the metabolism of cell components []; it is synthesised with a leader peptide to target it to the cell membrane []. After cleavage of the leader peptide, the enzyme is retained in the membrane by a C-terminal anchor []. There are three families of serine-type D-Ala-D-Ala peptidase (designated S11, S12 and S13), which are also known as low molecular weight penicillin-binding proteins []. Family S13 comprises D-Ala-D-Ala peptidases that have sufficient sequence similarity around their active sites to assume a distant evolutionary relationship to other clan members; members of the S13 family also bind penicillin and have D-amino-peptidase activity. Proteases of family S11 have exclusive D-Ala-D-Ala peptidase activity, while some members of S12 are C beta-lactamases [].; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 3A3F_B 3A3E_B 3A3D_A 3A3I_B 2Y59_C 1W8Q_A 3ZVT_B 3ZVW_B 2VGJ_B 1W79_D ....
Probab=40.06 E-value=52 Score=31.11 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=30.9
Q ss_pred ceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 023640 68 RNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 109 (279)
Q Consensus 68 ~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TN 109 (279)
..+.|.|.|+|+|..+.+.++++.+++.|+.-..-.+.++..
T Consensus 82 G~L~l~G~GDP~l~~~~l~~la~~l~~~Gi~~I~g~i~~D~s 123 (444)
T PF02113_consen 82 GDLYLKGGGDPSLTSEDLWALAAQLKAAGIKRITGDIILDDS 123 (444)
T ss_dssp SEEEEEECSBTTBCHHHHHHHHHHHHHTT-SEESSEEEEETT
T ss_pred CcEEEEecCCCccCHHHHHHHHHHHHHcCCCeEeeEEEEECc
Confidence 478888889999999999999999999885321124455544
No 228
>PLN02645 phosphoglycolate phosphatase
Probab=39.65 E-value=60 Score=28.90 Aligned_cols=56 Identities=13% Similarity=0.224 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHhc-cCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCch
Q 023640 48 NLSSGEIVEQLVHASR-LSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV 112 (279)
Q Consensus 48 ~~~~~ei~~~i~~~~~-~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~ 112 (279)
.++.+++.+.+..... ...++++.+.| ++|+- ...++++.+++.| ..+.+.||...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~D~DGtl~~~-~~~~~---ga~e~l~~lr~~g-----~~~~~~TN~~~ 71 (311)
T PLN02645 15 LLTLENADELIDSVETFIFDCDGVIWKG-DKLIE---GVPETLDMLRSMG-----KKLVFVTNNST 71 (311)
T ss_pred cCCHHHHHHHHHhCCEEEEeCcCCeEeC-CccCc---CHHHHHHHHHHCC-----CEEEEEeCCCC
Confidence 3455566665554321 12467888889 87653 3579999999988 79999999763
No 229
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=38.54 E-value=3.2e+02 Score=25.22 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhCCcE-EEE-EecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEEe
Q 023640 183 EQHAHQLGKLLETFQVV-VNL-IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 239 (279)
Q Consensus 183 ~~~l~~l~~~l~~~~~~-i~l-~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~v 239 (279)
.-+++++.+.+.+ +.+ +-+ .|-||.| .-.++++++++.++++ ++++-+..
T Consensus 150 ~~d~~~l~~~i~~-ktk~i~ln~P~NPTG-----av~~~~~l~~i~~~a~-~~~i~ii~ 201 (393)
T COG0436 150 KPDLEDLEAAITP-KTKAIILNSPNNPTG-----AVYSKEELKAIVELAR-EHDIIIIS 201 (393)
T ss_pred cCCHHHHHhhcCc-cceEEEEeCCCCCcC-----cCCCHHHHHHHHHHHH-HcCeEEEE
Confidence 3345566555655 455 222 3777764 2258999999999999 78875433
No 230
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=38.33 E-value=3.3e+02 Score=25.29 Aligned_cols=74 Identities=9% Similarity=0.169 Sum_probs=46.6
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC-ch-------------
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG-IV------------- 112 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG-~~------------- 112 (279)
.+++.+++++.+.+..+. |++..++.- | +. .+.+..+++.| ..+.|.+-| .+
T Consensus 136 ~~~t~d~~~~~v~~qa~~-GVdfmTIHa-G---V~----~~~~~~~~~~~-----R~~giVSRGGsi~a~Wml~~~~ENp 201 (432)
T COG0422 136 EDLTEDDFFDTVEKQAEQ-GVDFMTIHA-G---VL----LEYVPRTKRSG-----RVTGIVSRGGSIMAAWMLHNHKENP 201 (432)
T ss_pred hhCCHHHHHHHHHHHHHh-CCcEEEeeh-h---hh----HHHHHHHHhcC-----ceeeeeccchHHHHHHHHHcCCcCc
Confidence 467888888888877753 788888887 6 32 35566666655 466677666 11
Q ss_pred --hhhHHHhccCCCceEEEEe-CCC
Q 023640 113 --HAINKFHSDLPGLNLAVSL-HAP 134 (279)
Q Consensus 113 --~~~~~l~~~~~~~~i~iSl-d~~ 134 (279)
...+.+.+.....|+.||| |+.
T Consensus 202 ly~~fd~lleI~k~yDvtlSLGDgl 226 (432)
T COG0422 202 LYEHFDELLEIFKEYDVTLSLGDGL 226 (432)
T ss_pred hhhhHHHHHHHHHHhCeeeeccCCC
Confidence 1133344433346888998 554
No 231
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=38.30 E-value=2e+02 Score=25.14 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=12.9
Q ss_pred cCHHHHHHHHHHHhCCC
Q 023640 80 NNYAALVEAVRIMTGLP 96 (279)
Q Consensus 80 l~~~~i~~~i~~~~~~g 96 (279)
++++.+.++++.+.+.|
T Consensus 19 iD~~~l~~~i~~l~~~G 35 (292)
T PRK03170 19 VDFAALRKLVDYLIANG 35 (292)
T ss_pred cCHHHHHHHHHHHHHcC
Confidence 66777888888887776
No 232
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=38.07 E-value=1.5e+02 Score=26.09 Aligned_cols=17 Identities=12% Similarity=-0.036 Sum_probs=11.7
Q ss_pred cCHHHHHHHHHHHhCCC
Q 023640 80 NNYAALVEAVRIMTGLP 96 (279)
Q Consensus 80 l~~~~i~~~i~~~~~~g 96 (279)
++.+.+..+++++.+.|
T Consensus 18 iD~~~l~~l~~~l~~~G 34 (289)
T cd00951 18 FDEDAYRAHVEWLLSYG 34 (289)
T ss_pred cCHHHHHHHHHHHHHcC
Confidence 55666777777777665
No 233
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=37.76 E-value=1.8e+02 Score=22.68 Aligned_cols=56 Identities=16% Similarity=0.271 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 023640 48 NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 109 (279)
Q Consensus 48 ~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TN 109 (279)
.++.+++...+..... .+.....+-. |+--..|+.+.+++..+++.|+ .++.+.|.
T Consensus 78 ~v~~~~l~~~l~~~~~-~~~~~~v~i~-aD~~v~y~~vv~vm~~l~~aG~----~~v~L~t~ 133 (137)
T COG0848 78 PVSLEELEAALAALAK-GKKNPRVVIR-ADKNVKYGTVVKVMDLLKEAGF----KKVGLVTE 133 (137)
T ss_pred cccHHHHHHHHHHHhc-CCCCceEEEE-eCCCCCHHHHHHHHHHHHHcCC----ceEEEEec
Confidence 4777888887777653 1233334444 4667778999999999999985 68888874
No 234
>PF06265 DUF1027: Protein of unknown function (DUF1027); InterPro: IPR009370 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2KL5_A.
Probab=36.51 E-value=13 Score=26.55 Aligned_cols=9 Identities=33% Similarity=1.143 Sum_probs=4.8
Q ss_pred CCcCccCcc
Q 023640 29 VGCKMGCNF 37 (279)
Q Consensus 29 ~gCNl~C~y 37 (279)
.-||+.|+|
T Consensus 74 EyCNFGcaY 82 (86)
T PF06265_consen 74 EYCNFGCAY 82 (86)
T ss_dssp HSS-SS--E
T ss_pred HHccCCCce
Confidence 459999987
No 235
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=36.44 E-value=2.7e+02 Score=23.75 Aligned_cols=69 Identities=10% Similarity=0.146 Sum_probs=41.6
Q ss_pred HHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEE
Q 023640 160 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT 237 (279)
Q Consensus 160 ~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v 237 (279)
+.+++.|.+..+ .+-|+ ...+.+..+++.+. .+-++..+|...+..+.+.+-+.+.++++++. +.++++
T Consensus 102 ~~Ik~~G~kaGl--alnP~--T~~~~l~~~l~~vD----~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~-~~~~~~ 170 (229)
T PRK09722 102 DEIRRAGMKVGL--VLNPE--TPVESIKYYIHLLD----KITVMTVDPGFAGQPFIPEMLDKIAELKALRE-RNGLEY 170 (229)
T ss_pred HHHHHcCCCEEE--EeCCC--CCHHHHHHHHHhcC----EEEEEEEcCCCcchhccHHHHHHHHHHHHHHH-hcCCCe
Confidence 445566766553 34444 34445555444332 35666778865666777677788888888887 566553
No 236
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=36.38 E-value=3.7e+02 Score=25.32 Aligned_cols=156 Identities=15% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhccCCCceEEEecCCccccC-HHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhccCCCceEEEE
Q 023640 52 GEIVEQLVHASRLSNIRNVVFMGMGEPLNN-YAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 130 (279)
Q Consensus 52 ~ei~~~i~~~~~~~~~~~I~fsG~GEPll~-~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~~i~iS 130 (279)
++++.-+...... +++.+++-| | |+-. .+++..+.+.+--.. .-..-=.+.|||...+-.++ +....+..-
T Consensus 233 ddLI~G~~a~id~-~vDvfVvEG-g-PFN~a~dRl~aFakaVa~sR--IL~pGkVVaTNGAYEDEcRi---GLRsGLN~i 304 (505)
T PF10113_consen 233 DDLITGLKACIDM-GVDVFVVEG-G-PFNRAKDRLKAFAKAVAASR--ILVPGKVVATNGAYEDECRI---GLRSGLNVI 304 (505)
T ss_pred HHHHHHHHHHHhc-CCcEEEEeC-C-CcccchhHHHHHHHHHHHhe--eeecCcEEecCCcchHHHHH---HHhhcccee
Q ss_pred eCCCCHHHHhhhcCCC------CCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE---EE
Q 023640 131 LHAPVQDVRCQIMPAA------RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV---VN 201 (279)
Q Consensus 131 ld~~~~~~~~~i~~~~------~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~---i~ 201 (279)
|.+..-.+|.+..+-. +...+-++++-+++=++..-..+-+ +.+++..|+.-.+-++.. .+
T Consensus 305 itGFp~NHHGYMcGYsPgtArRg~FGLPRV~~ImkeEv~~~~~~~p~----------~k~~l~ala~a~kflg~~~iYP~ 374 (505)
T PF10113_consen 305 ITGFPKNHHGYMCGYSPGTARRGNFGLPRVMKIMKEEVANGLTPVPA----------QKEELEALAKAVKFLGYENIYPN 374 (505)
T ss_pred eccCCCCCcceeccCCCCccccccCCcHHHHHHHHHHHhcCCCcccc----------cHHHHHHHHHHHhhcCccccccc
Q ss_pred EEecCCCCCCCCcCCCCHHHHHHH
Q 023640 202 LIPFNPIGSVSQFRTSSDDKVSSF 225 (279)
Q Consensus 202 l~~~~p~~~~~~~~~~~~e~l~~~ 225 (279)
.+-+.+.|.+++..-++....++.
T Consensus 375 ~iG~~~iGDAHW~~l~~s~l~~~~ 398 (505)
T PF10113_consen 375 KIGGTYIGDAHWACLPNSPLYERV 398 (505)
T ss_pred ccccEecccceeeeecCchhhhcc
No 237
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=36.33 E-value=1.9e+02 Score=21.86 Aligned_cols=54 Identities=11% Similarity=0.254 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEc
Q 023640 49 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVST 108 (279)
Q Consensus 49 ~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~T 108 (279)
++.+++...+........-..|.+.+ +.-..++.+.+++..+++.|+ .++++.|
T Consensus 75 ~~~~~L~~~L~~~~~~~~~~~v~i~a--D~~~~~~~vv~vmd~~~~~G~----~~v~l~t 128 (129)
T TIGR02801 75 LDADELLAEIAAALAANPDTPVLIRA--DKTVPYGEVIKVMALLKQAGI----EKVGLIT 128 (129)
T ss_pred cCHHHHHHHHHHHHhhCCCceEEEEc--CCCCCHHHHHHHHHHHHHcCC----CeEEEee
Confidence 45566666666543211223566666 666778999999999999984 4677665
No 238
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=36.25 E-value=3.7e+02 Score=25.27 Aligned_cols=155 Identities=12% Similarity=0.177 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhccCCCceE
Q 023640 48 NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNL 127 (279)
Q Consensus 48 ~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~~i 127 (279)
.+..++++-.+..+.+- |.-.+-++| | ..+-..++++++-. |..++++.+..+..-+
T Consensus 24 Rmrt~DmlPi~e~lD~~-G~~slE~WG-G------ATFDaciRfLnEDP---------------WeRLr~lk~~~~nT~L 80 (472)
T COG5016 24 RMRTEDMLPIAEALDKV-GYWSLEVWG-G------ATFDACIRFLNEDP---------------WERLRELKKAVPNTKL 80 (472)
T ss_pred HHhHHhhHHHHHHHHhc-CeeEEEecC-C------ccHHHHHHHhcCCH---------------HHHHHHHHHhCCCcHH
Q ss_pred EEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEecC
Q 023640 128 AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFN 206 (279)
Q Consensus 128 ~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~ 206 (279)
++=+-+-+---|+.. -+++++..-+...++|+.+.=.+-.+ || ..+++.-++..++.|.+ ...+-|.
T Consensus 81 QMLlRGQNlvGYrhy--------aDDvVe~Fv~ka~~nGidvfRiFDAl---ND-~RNl~~ai~a~kk~G~h~q~~i~YT 148 (472)
T COG5016 81 QMLLRGQNLVGYRHY--------ADDVVEKFVEKAAENGIDVFRIFDAL---ND-VRNLKTAIKAAKKHGAHVQGTISYT 148 (472)
T ss_pred HHHHccCccccccCC--------chHHHHHHHHHHHhcCCcEEEechhc---cc-hhHHHHHHHHHHhcCceeEEEEEec
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHhcCCeE-EEeccccc
Q 023640 207 PIGSVSQFRTSSDDKVSSFQKILRGSYNIR-TTVRKQMG 244 (279)
Q Consensus 207 p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~-v~vr~~~g 244 (279)
-. +..+.+.+.++.+.+. ..|++ +.++...|
T Consensus 149 ~s------PvHt~e~yv~~akel~-~~g~DSIciKDmaG 180 (472)
T COG5016 149 TS------PVHTLEYYVELAKELL-EMGVDSICIKDMAG 180 (472)
T ss_pred cC------CcccHHHHHHHHHHHH-HcCCCEEEeecccc
No 239
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=36.16 E-value=2.9e+02 Score=24.06 Aligned_cols=79 Identities=11% Similarity=0.026 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHH
Q 023640 151 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 229 (279)
Q Consensus 151 ~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l 229 (279)
++.+.+.+ +++++.|..+.+.....-+..-+++.+.++++.+.+.|+. +.+- . .....+++++.++.+.+
T Consensus 117 ~~~~~~~i-~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~--D------T~G~~~P~~v~~lv~~l 187 (275)
T cd07937 117 VRNLEVAI-KAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIK--D------MAGLLTPYAAYELVKAL 187 (275)
T ss_pred HHHHHHHH-HHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEc--C------CCCCCCHHHHHHHHHHH
Confidence 45677777 5677778776654432222233567889999999888876 5442 1 22235678888888887
Q ss_pred HhcCCeEEE
Q 023640 230 RGSYNIRTT 238 (279)
Q Consensus 230 ~~~~gi~v~ 238 (279)
++..++++.
T Consensus 188 ~~~~~~~l~ 196 (275)
T cd07937 188 KKEVGLPIH 196 (275)
T ss_pred HHhCCCeEE
Confidence 744454443
No 240
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=34.70 E-value=4.2e+02 Score=25.35 Aligned_cols=159 Identities=14% Similarity=0.186 Sum_probs=86.4
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecCCccc------cCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC-----c--hh
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPL------NNYAALVEAVRIMTGLPFQVSPKRITVSTVG-----I--VH 113 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPl------l~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG-----~--~~ 113 (279)
..++.++.+..+..+.+ .|+..|-++| |.-+ ++.+ -.+.++.+++.. +...+....-| + .+
T Consensus 20 ~~~~t~dkl~Ia~~Ld~-~Gv~~IE~~g-gatfd~~~~Fl~e~-p~e~l~~l~~~~---~~~~l~~l~r~~N~~G~~~~~ 93 (467)
T PRK14041 20 TRMRTEDMLPALEAFDR-MGFYSMEVWG-GATFDVCVRFLNEN-PWERLKEIRKRL---KNTKIQMLLRGQNLVGYRHYA 93 (467)
T ss_pred ccCCHHHHHHHHHHHHH-cCCCEEEecC-CccchhhhcccCCC-HHHHHHHHHHhC---CCCEEEEEeccccccCccccc
Confidence 46788888888877665 3888998888 7543 3322 235566555541 11334332233 2 11
Q ss_pred -h-----hHHHhccCCCceE-EEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEE--EEEEEeCCCCCcHH
Q 023640 114 -A-----INKFHSDLPGLNL-AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF--IEYIMLDGVNDEEQ 184 (279)
Q Consensus 114 -~-----~~~l~~~~~~~~i-~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~--i~~vv~~g~nd~~~ 184 (279)
+ ++...+. .+++ .+. ++.++ .+.+..++ +++++.|..+. +.++..| .++.+
T Consensus 94 dDvv~~fv~~A~~~--Gvd~irif-~~lnd--------------~~n~~~~i-~~ak~~G~~v~~~i~~t~~p--~~t~e 153 (467)
T PRK14041 94 DDVVELFVKKVAEY--GLDIIRIF-DALND--------------IRNLEKSI-EVAKKHGAHVQGAISYTVSP--VHTLE 153 (467)
T ss_pred chhhHHHHHHHHHC--CcCEEEEE-EeCCH--------------HHHHHHHH-HHHHHCCCEEEEEEEeccCC--CCCHH
Confidence 1 1222222 2343 222 22233 23344555 55667777665 3333444 34678
Q ss_pred HHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEEe
Q 023640 185 HAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 239 (279)
Q Consensus 185 ~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~v 239 (279)
.+.++++.+.+.|+. +.+- . .....+++++.++.+.+++..++++.+
T Consensus 154 ~~~~~a~~l~~~Gad~I~i~---D-----t~G~l~P~~v~~Lv~~lk~~~~vpI~~ 201 (467)
T PRK14041 154 YYLEFARELVDMGVDSICIK---D-----MAGLLTPKRAYELVKALKKKFGVPVEV 201 (467)
T ss_pred HHHHHHHHHHHcCCCEEEEC---C-----ccCCcCHHHHHHHHHHHHHhcCCceEE
Confidence 889999999888876 4442 1 112246777778877777555554433
No 241
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=34.29 E-value=3.4e+02 Score=24.17 Aligned_cols=83 Identities=11% Similarity=0.148 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHH
Q 023640 150 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKI 228 (279)
Q Consensus 150 ~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~ 228 (279)
..+.+.+-++...+..+.++.+.+-+- ..|+.++..++++.+.+.|+. +.+.+..+. ..+.. ....+.+.++
T Consensus 106 ~p~~~~~iv~~~~~~~~~pvsvKiR~g--~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~---q~~~~--~a~w~~i~~i 178 (309)
T PF01207_consen 106 DPDLLAEIVKAVRKAVPIPVSVKIRLG--WDDSPEETIEFARILEDAGVSAITVHGRTRK---QRYKG--PADWEAIAEI 178 (309)
T ss_dssp -HHHHHHHHHHHHHH-SSEEEEEEESE--CT--CHHHHHHHHHHHHTT--EEEEECS-TT---CCCTS-----HHHHHHC
T ss_pred ChHHhhHHHHhhhcccccceEEecccc--cccchhHHHHHHHHhhhcccceEEEecCchh---hcCCc--ccchHHHHHH
Confidence 345555555444444566776665543 345677899999999999986 666655553 33332 3334444444
Q ss_pred HHhcCCeEEEec
Q 023640 229 LRGSYNIRTTVR 240 (279)
Q Consensus 229 l~~~~gi~v~vr 240 (279)
.+ ...++|...
T Consensus 179 ~~-~~~ipvi~N 189 (309)
T PF01207_consen 179 KE-ALPIPVIAN 189 (309)
T ss_dssp HH-C-TSEEEEE
T ss_pred hh-cccceeEEc
Confidence 44 445655443
No 242
>PRK12313 glycogen branching enzyme; Provisional
Probab=34.03 E-value=1.6e+02 Score=29.25 Aligned_cols=54 Identities=11% Similarity=0.210 Sum_probs=36.7
Q ss_pred HHHHHHHHhhCCcE-EEEEecCCC--CC-----CCCcCC-----CCHHHHHHHHHHHHhcCCeEEEec
Q 023640 186 AHQLGKLLETFQVV-VNLIPFNPI--GS-----VSQFRT-----SSDDKVSSFQKILRGSYNIRTTVR 240 (279)
Q Consensus 186 l~~l~~~l~~~~~~-i~l~~~~p~--~~-----~~~~~~-----~~~e~l~~~~~~l~~~~gi~v~vr 240 (279)
++++++.|+++|+. |.++|.... .. ..++.. -+.++++++.+.+. +.|+.|.+-
T Consensus 173 ~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H-~~Gi~VilD 239 (633)
T PRK12313 173 ADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALH-QNGIGVILD 239 (633)
T ss_pred HHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHH-HCCCEEEEE
Confidence 44567889999987 888886322 11 111211 26889999999999 889987443
No 243
>PF06463 Mob_synth_C: Molybdenum Cofactor Synthesis C; InterPro: IPR010505 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This entry represents MoaA, which belongs to a family of enzymes involved in the synthesis of metallo-cofactors (IPR000385 from INTERPRO). Each subunit of the MoaA dimer is comprised of an N-terminal SAM domain (IPR007197 from INTERPRO) that contains the [4Fe-4S] cluster typical for this family of enzymes, as well as an additional [4Fe-4S] cluster in the C-terminal domain that is unique to MoaA proteins []. The unique Fe site of the C-terminal [4Fe-4S] cluster is thought to be involved in the binding and activation of 5'-GTP. Mutations in the human MoCF biosynthesis proteins MOCS1, MOCS2 or GEPH cause MoCF Deficiency type A (MOCOD), causing the loss of activity of MoCF-containing enzymes, resulting in neurological abnormalities and death [].; GO: 0051539 4 iron, 4 sulfur cluster binding, 0006777 Mo-molybdopterin cofactor biosynthetic process, 0019008 molybdopterin synthase complex; PDB: 2FB2_A 2FB3_A 1TV8_B 1TV7_A.
Probab=33.93 E-value=95 Score=23.79 Aligned_cols=26 Identities=8% Similarity=0.270 Sum_probs=14.0
Q ss_pred EEeccccccccccccccccccCcCcc
Q 023640 237 TTVRKQMGQDISGACGQLVVNLPDKI 262 (279)
Q Consensus 237 v~vr~~~g~~~~~~cg~~~~~~~~~~ 262 (279)
|.+-....++.|..|+.++.+.-.++
T Consensus 61 vG~I~~~s~~FC~~CNRiRlTsdG~l 86 (128)
T PF06463_consen 61 VGFISPVSNPFCSSCNRIRLTSDGKL 86 (128)
T ss_dssp EEEE-TTTS--GGG--EEEE-TTSEE
T ss_pred EEEEeCCCCCCCCcCCEEEEccCccE
Confidence 44444556678899999998876665
No 244
>PRK14057 epimerase; Provisional
Probab=33.13 E-value=3.3e+02 Score=23.71 Aligned_cols=59 Identities=12% Similarity=0.067 Sum_probs=36.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEE
Q 023640 172 EYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT 237 (279)
Q Consensus 172 ~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v 237 (279)
=..+-|+ ...+.++.+++.+. .+-++..+|...+..+.+..-+.+.++.+++. +.|+.+
T Consensus 136 GlAlnP~--Tp~e~i~~~l~~vD----~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~-~~~~~~ 194 (254)
T PRK14057 136 GISLCPA--TPLDVIIPILSDVE----VIQLLAVNPGYGSKMRSSDLHERVAQLLCLLG-DKREGK 194 (254)
T ss_pred EEEECCC--CCHHHHHHHHHhCC----EEEEEEECCCCCchhccHHHHHHHHHHHHHHH-hcCCCc
Confidence 3445554 34455555444332 35667778876667777777888888888887 556543
No 245
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=33.12 E-value=3.6e+02 Score=24.22 Aligned_cols=107 Identities=18% Similarity=0.160 Sum_probs=62.7
Q ss_pred ccCCCHHHHHHHHHHHhc-cCCCceEEEecCCcc-ccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhccCC
Q 023640 46 KSNLSSGEIVEQLVHASR-LSNIRNVVFMGMGEP-LNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLP 123 (279)
Q Consensus 46 ~~~~~~~ei~~~i~~~~~-~~~~~~I~fsG~GEP-ll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~~~~ 123 (279)
+..++.+++-+.+.+... ....+.|.++| -=| =+..+...++++.+++.| ..+.++|.|-.+ .+..+..|
T Consensus 108 Gp~is~~~~~~~l~~~~~~l~~~d~VvlsG-SlP~g~~~d~y~~li~~~~~~g-----~~vilD~Sg~~L--~~~L~~~P 179 (310)
T COG1105 108 GPEISEAELEQFLEQLKALLESDDIVVLSG-SLPPGVPPDAYAELIRILRQQG-----AKVILDTSGEAL--LAALEAKP 179 (310)
T ss_pred CCCCCHHHHHHHHHHHHHhcccCCEEEEeC-CCCCCCCHHHHHHHHHHHHhcC-----CeEEEECChHHH--HHHHccCC
Confidence 456777766555555443 12346799999 444 344677899999999998 799999999543 23333322
Q ss_pred CceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCe
Q 023640 124 GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 168 (279)
Q Consensus 124 ~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~ 168 (279)
. =++--.+|+...... ...+.++++++.++ +...|.+
T Consensus 180 --~---lIKPN~~EL~~~~g~--~~~~~~d~i~~a~~-l~~~g~~ 216 (310)
T COG1105 180 --W---LIKPNREELEALFGR--ELTTLEDVIKAARE-LLAEGIE 216 (310)
T ss_pred --c---EEecCHHHHHHHhCC--CCCChHHHHHHHHH-HHHCCCC
Confidence 1 122222444444322 22445677777766 4444443
No 246
>PTZ00175 diphthine synthase; Provisional
Probab=33.08 E-value=1.2e+02 Score=26.67 Aligned_cols=38 Identities=8% Similarity=0.066 Sum_probs=29.1
Q ss_pred ceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCch
Q 023640 68 RNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV 112 (279)
Q Consensus 68 ~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~ 112 (279)
+.+.+++ |+|++. ..-.+++..+++.| +.+.+..|...
T Consensus 78 ~Vv~L~~-GDP~i~-~t~~~l~~~~~~~g-----i~vevIPGvSi 115 (270)
T PTZ00175 78 NVAFLVV-GDPFCA-TTHTDLYLRAKKKG-----IEVEVIHNASI 115 (270)
T ss_pred CEEEEEC-CCCCcc-CCHHHHHHHHHHCC-----CcEEEECCcCH
Confidence 4677888 999996 55567888888888 67888876543
No 247
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=33.02 E-value=3.1e+02 Score=23.67 Aligned_cols=18 Identities=17% Similarity=0.074 Sum_probs=12.8
Q ss_pred ccCHHHHHHHHHHHhCCC
Q 023640 79 LNNYAALVEAVRIMTGLP 96 (279)
Q Consensus 79 ll~~~~i~~~i~~~~~~g 96 (279)
.++++.+.++++.+.+.|
T Consensus 14 ~iD~~~~~~~i~~l~~~G 31 (281)
T cd00408 14 EVDLDALRRLVEFLIEAG 31 (281)
T ss_pred CcCHHHHHHHHHHHHHcC
Confidence 356677778888777766
No 248
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=32.76 E-value=55 Score=21.76 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=11.1
Q ss_pred EEecCCccccCHHHHHHHH
Q 023640 71 VFMGMGEPLNNYAALVEAV 89 (279)
Q Consensus 71 ~fsG~GEPll~~~~i~~~i 89 (279)
.|.| |+.+--.+.+.+++
T Consensus 54 ifi~-g~~igg~~~l~~~l 71 (72)
T cd03029 54 VFID-GELIGGSDDLEKYF 71 (72)
T ss_pred EEEC-CEEEeCHHHHHHHh
Confidence 3777 77766566555543
No 249
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=32.44 E-value=1.8e+02 Score=20.49 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 184 QHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 184 ~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
..+.+.++.+...|+. +.++|+.+.
T Consensus 45 P~i~~~l~~l~~~g~~~vvvvPl~~~ 70 (101)
T cd03409 45 PDTEEAIRELAEEGYQRVVIVPLAPV 70 (101)
T ss_pred CCHHHHHHHHHHcCCCeEEEEeCccc
Confidence 3466777777777765 888999887
No 250
>PLN02444 HMP-P synthase
Probab=32.37 E-value=4e+02 Score=26.17 Aligned_cols=28 Identities=18% Similarity=0.263 Sum_probs=23.2
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecCC
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGMG 76 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~G 76 (279)
..++.+++++.+.+..+. |++.+++.- |
T Consensus 295 ~~lt~d~~~d~ieeQaeq-GVDfmTIH~-G 322 (642)
T PLN02444 295 ENLTWEVFRETLIEQAEQ-GVDYFTIHA-G 322 (642)
T ss_pred hhCCHHHHHHHHHHHHHh-CCCEEEECh-h
Confidence 468888999999887764 899999988 7
No 251
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=32.14 E-value=3.2e+02 Score=23.97 Aligned_cols=17 Identities=18% Similarity=0.012 Sum_probs=12.5
Q ss_pred cCHHHHHHHHHHHhC-CC
Q 023640 80 NNYAALVEAVRIMTG-LP 96 (279)
Q Consensus 80 l~~~~i~~~i~~~~~-~g 96 (279)
++.+.+.++++++.+ .|
T Consensus 21 iD~~~~~~li~~l~~~~G 38 (293)
T PRK04147 21 IDEQGLRRLVRFNIEKQG 38 (293)
T ss_pred cCHHHHHHHHHHHHhcCC
Confidence 556777888888777 66
No 252
>TIGR01467 cobI_cbiL precorrin-2 C20-methyltransferase. This model represents precorrin-2 C20-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis.
Probab=31.78 E-value=1.1e+02 Score=25.72 Aligned_cols=51 Identities=12% Similarity=0.098 Sum_probs=31.7
Q ss_pred HHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCc
Q 023640 53 EIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGI 111 (279)
Q Consensus 53 ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~ 111 (279)
++.+.+.+... .+-+.+.++. |+|++. .....+++.+.+.| ..+.+...-+
T Consensus 78 ~~~~~i~~~~~-~g~~Vv~l~~-GDP~~y-~~~~~l~~~~~~~~-----~~veviPGiS 128 (230)
T TIGR01467 78 EAAEAVAAELE-EGRDVAFLTL-GDPSLY-STFSYLLQRLQGMG-----IEVEVVPGIT 128 (230)
T ss_pred HHHHHHHHHHH-CCCcEEEEeC-CCCCcc-cCHHHHHHHHHHCC-----CcEEEeCChh
Confidence 34444443332 2445677888 999995 65667777777655 4677776544
No 253
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=31.65 E-value=1.7e+02 Score=19.83 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=36.1
Q ss_pred HHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEEec
Q 023640 186 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 240 (279)
Q Consensus 186 l~~l~~~l~~~~~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~vr 240 (279)
--+++..+..++..+.++...+. ..+..+++--..+.+.++ +.|+++...
T Consensus 11 g~E~A~~l~~~g~~vtli~~~~~----~~~~~~~~~~~~~~~~l~-~~gV~v~~~ 60 (80)
T PF00070_consen 11 GIELAEALAELGKEVTLIERSDR----LLPGFDPDAAKILEEYLR-KRGVEVHTN 60 (80)
T ss_dssp HHHHHHHHHHTTSEEEEEESSSS----SSTTSSHHHHHHHHHHHH-HTTEEEEES
T ss_pred HHHHHHHHHHhCcEEEEEeccch----hhhhcCHHHHHHHHHHHH-HCCCEEEeC
Confidence 35778888888988888877664 224456777788888888 778876443
No 254
>COG3246 Uncharacterized conserved protein [Function unknown]
Probab=31.64 E-value=2.7e+02 Score=24.82 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=42.3
Q ss_pred cCCCHHHHHHHHHHHhccCCC--ceEEEe-cCCccccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCC
Q 023640 47 SNLSSGEIVEQLVHASRLSNI--RNVVFM-GMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVG 110 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~--~~I~fs-G~GEPll~~~~i~~~i~~~~~~-g~~~~~~~v~i~TNG 110 (279)
-.+||+++.+.+.+..+. |. -++..- ..|.|++.++...++++.+|+. + ...+.++|-+
T Consensus 24 lP~TP~qIA~~a~~aa~A-GAai~HlHvRp~dG~pt~d~~~yr~~l~rIr~~~~----D~vin~ttg~ 86 (298)
T COG3246 24 LPVTPDQIASDAIAAAKA-GAAILHLHVRPEDGRPTLDPEAYREVLERIRAAVG----DAVINLTTGE 86 (298)
T ss_pred CCCCHHHHHHHHHHHHhc-CcceEEEEecCCCCCcccCHHHHHHHHHHHHccCC----CeEEEecccc
Confidence 357999999999887653 33 344443 4499999998888999999998 3 2455555554
No 255
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=31.38 E-value=3.7e+02 Score=25.30 Aligned_cols=86 Identities=14% Similarity=0.197 Sum_probs=54.2
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCC-CCCcC----------------CCCHHHHHHHHHHHH
Q 023640 169 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGS-VSQFR----------------TSSDDKVSSFQKILR 230 (279)
Q Consensus 169 v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~-~~~~~----------------~~~~e~l~~~~~~l~ 230 (279)
+.+.+++.+-+.. .++..+..+.+++.|.+ |++.|+.-.|. .+.|. ....+++.++...++
T Consensus 8 i~iQTvlsk~~G~-~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~ 86 (423)
T PF14701_consen 8 ISIQTVLSKWMGP-FSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAE 86 (423)
T ss_pred eEEEEEhhhhcCC-HhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHH
Confidence 6777777765543 34677777777888876 88888776652 12221 123467888888777
Q ss_pred hcCCe----EEEeccccccccccccccccccCcCc
Q 023640 231 GSYNI----RTTVRKQMGQDISGACGQLVVNLPDK 261 (279)
Q Consensus 231 ~~~gi----~v~vr~~~g~~~~~~cg~~~~~~~~~ 261 (279)
+++|+ +|.+.+. +.-+.-+..||+-
T Consensus 87 ~~~~ll~~~DvV~NHt------A~nS~Wl~eHPEa 115 (423)
T PF14701_consen 87 KKYGLLSMTDVVLNHT------ANNSPWLREHPEA 115 (423)
T ss_pred HHcCceEEEEEeeccC------cCCChHHHhCccc
Confidence 57776 4556654 4555666666654
No 256
>PRK05402 glycogen branching enzyme; Provisional
Probab=31.28 E-value=1.8e+02 Score=29.51 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhCCcE-EEEEecC--CCCC-----CCCcCC-----CCHHHHHHHHHHHHhcCCeEEEec
Q 023640 184 QHAHQLGKLLETFQVV-VNLIPFN--PIGS-----VSQFRT-----SSDDKVSSFQKILRGSYNIRTTVR 240 (279)
Q Consensus 184 ~~l~~l~~~l~~~~~~-i~l~~~~--p~~~-----~~~~~~-----~~~e~l~~~~~~l~~~~gi~v~vr 240 (279)
+-++++++.|+++|+. |.++|.. |... ..++.. -+.++++++.+.+. +.|+.|.+-
T Consensus 266 ~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H-~~Gi~VilD 334 (726)
T PRK05402 266 ELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACH-QAGIGVILD 334 (726)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHH-HCCCEEEEE
Confidence 3345567889999997 8888863 2211 111211 26889999999999 889987544
No 257
>PF12674 Zn_ribbon_2: Putative zinc ribbon domain
Probab=31.22 E-value=34 Score=24.17 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=21.2
Q ss_pred ccCccccCCCCCCccCCCHHHHHHHHHHHhc
Q 023640 33 MGCNFCATGTMGFKSNLSSGEIVEQLVHASR 63 (279)
Q Consensus 33 l~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~ 63 (279)
-=|.|||....... ..|.+++++.......
T Consensus 27 ~YC~yCy~~G~Ft~-~~t~eemie~~~~~~~ 56 (81)
T PF12674_consen 27 DYCSYCYQNGEFTQ-DITMEEMIEFCVPFMD 56 (81)
T ss_pred hHHHHHhcCCceee-cCCHHHHHHHHHHHHH
Confidence 34999998543344 7888998888776543
No 258
>TIGR01748 rhaA L-rhamnose isomerase. This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including E. coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. Characterization of this family is based on members in E. coli and Salmonella.
Probab=31.16 E-value=3.2e+02 Score=25.48 Aligned_cols=83 Identities=13% Similarity=0.124 Sum_probs=50.5
Q ss_pred ccCCCHHHHHHHHHHHhcc-CCCceEEEecC----Ccccc----CHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhH
Q 023640 46 KSNLSSGEIVEQLVHASRL-SNIRNVVFMGM----GEPLN----NYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAIN 116 (279)
Q Consensus 46 ~~~~~~~ei~~~i~~~~~~-~~~~~I~fsG~----GEPll----~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~ 116 (279)
++..+++|+.+.+..+... ++...|++.-. |++.= -++.+...++.++++|+ .+.+.+|-+.
T Consensus 63 G~aR~~~El~~D~~~~~~L~pg~~~vnLH~~y~~~d~~vdrd~~~p~hf~~w~~~Ak~~gl-----glDfNpn~Fs---- 133 (414)
T TIGR01748 63 GKARTPSELRADLEKAMSLIPGKHRLNLHAIYLETDEPVSRDEIKPEHFKNWVEWAKANGL-----GLDFNPTCFS---- 133 (414)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCceeeecccccCCCcccccccCcccHHHHHHHHHHcCC-----CcCcCcccCC----
Confidence 5678999999888865432 34445554431 31111 14567788999999883 3334444331
Q ss_pred HHhccCCCceEEEEeCCCCHHHHhhh
Q 023640 117 KFHSDLPGLNLAVSLHAPVQDVRCQI 142 (279)
Q Consensus 117 ~l~~~~~~~~i~iSld~~~~~~~~~i 142 (279)
.+.....+||-.+++++++..
T Consensus 134 -----h~~~k~G~SLshpD~~iR~fw 154 (414)
T TIGR01748 134 -----HPLSADGFTLSHPDDSIRQFW 154 (414)
T ss_pred -----CccccCCCcccCCCHHHHHHH
Confidence 223344578888999998865
No 259
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=31.00 E-value=4.2e+02 Score=24.31 Aligned_cols=39 Identities=10% Similarity=0.013 Sum_probs=25.7
Q ss_pred CCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC
Q 023640 66 NIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 110 (279)
Q Consensus 66 ~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG 110 (279)
|++.|-+-= |-=--..+.+.++++.+++++ ..+.|-.|+
T Consensus 101 G~~~iRINP-GNig~~~~~v~~vv~~ak~~~-----ipIRIGvN~ 139 (360)
T PRK00366 101 GADALRINP-GNIGKRDERVREVVEAAKDYG-----IPIRIGVNA 139 (360)
T ss_pred CCCEEEECC-CCCCchHHHHHHHHHHHHHCC-----CCEEEecCC
Confidence 456666655 532121467888889998887 567777776
No 260
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=30.98 E-value=3.5e+02 Score=23.43 Aligned_cols=17 Identities=12% Similarity=0.120 Sum_probs=12.1
Q ss_pred cCHHHHHHHHHHHhCCC
Q 023640 80 NNYAALVEAVRIMTGLP 96 (279)
Q Consensus 80 l~~~~i~~~i~~~~~~g 96 (279)
++.+.+.+.++++.+.|
T Consensus 18 iD~~~~~~~i~~l~~~G 34 (284)
T cd00950 18 VDFDALERLIEFQIENG 34 (284)
T ss_pred cCHHHHHHHHHHHHHcC
Confidence 56677777777777766
No 261
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=30.97 E-value=1.4e+02 Score=23.00 Aligned_cols=70 Identities=11% Similarity=0.051 Sum_probs=43.1
Q ss_pred HHHHHHHHhhCCcE---E-----EEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEEecccccccccccccccccc
Q 023640 186 AHQLGKLLETFQVV---V-----NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 257 (279)
Q Consensus 186 l~~l~~~l~~~~~~---i-----~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~vr~~~g~~~~~~cg~~~~~ 257 (279)
.+++++.+++.+++ + ....|.|..-....+....+-+.++.+.++ +.|+.|.++.+.+- -......
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h-~~Girv~ay~~~~~-----d~~~~~~ 75 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACH-ERGIRVPAYFDFSW-----DEDAAER 75 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHH-HCCCEEEEEEeeec-----ChHHHHh
Confidence 35667777776654 2 345677764333333445677888899999 88999888864332 2223356
Q ss_pred CcCc
Q 023640 258 LPDK 261 (279)
Q Consensus 258 ~~~~ 261 (279)
|||-
T Consensus 76 HPeW 79 (132)
T PF14871_consen 76 HPEW 79 (132)
T ss_pred CCce
Confidence 6663
No 262
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=30.66 E-value=1.6e+02 Score=23.19 Aligned_cols=58 Identities=14% Similarity=0.222 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 151 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 151 ~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
-+..+.++++.++.....=.+..++.+|-....+|.+.+.+|++.+..+ +.+..+...
T Consensus 68 ~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~ 126 (140)
T PF06962_consen 68 PETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFI 126 (140)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEES
T ss_pred cHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEcc
Confidence 4677777766665432222344566788666788999999999998653 555555444
No 263
>TIGR00522 dph5 diphthine synthase. This protein participates in the modification of a specific His of elongation factor 2 of eukarotes and Archaea to diphthamide. The protein was characterized in Saccharomyces cerevisiae and designated DPH5.
Probab=30.19 E-value=1.2e+02 Score=26.36 Aligned_cols=38 Identities=5% Similarity=0.060 Sum_probs=27.7
Q ss_pred ceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCch
Q 023640 68 RNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV 112 (279)
Q Consensus 68 ~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~ 112 (279)
+.+.+++ |+|++. ....++++.+++.| ..+.+..+-+.
T Consensus 77 ~Vv~l~~-GDP~i~-~~~~~l~~~l~~~~-----i~vevIPGiSs 114 (257)
T TIGR00522 77 DVALLVA-GDPMVA-TTHTDLKLEAKRKG-----IETRIIHGASI 114 (257)
T ss_pred CEEEEEC-CcCccc-CCHHHHHHHHHHCC-----CeEEEECcHhH
Confidence 4567778 999995 65667777887777 67888765543
No 264
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism]
Probab=30.15 E-value=4.5e+02 Score=25.28 Aligned_cols=75 Identities=19% Similarity=0.208 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhCCeEEEEEEEeCC-CCCcHHHHHHHHHHHhhCCc-EEEEEecCCCCCCCCcCCCCHHH-HHHHHHHHHh
Q 023640 155 MNALKEYQKNSQQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDK-VSSFQKILRG 231 (279)
Q Consensus 155 ~~~l~~~~~~~~~~v~i~~vv~~g-~nd~~~~l~~l~~~l~~~~~-~i~l~~~~p~~~~~~~~~~~~e~-l~~~~~~l~~ 231 (279)
..++ .-.++++..+.+.-++..| +....+++.++++...+.|. ++.+..|.. +.+..|.+..+ ++++...++
T Consensus 98 ~~~~-~~v~~~~~~lHlmGl~S~GGVHSh~~Hl~ali~~a~k~g~~kV~~H~f~D---GRD~~P~s~~~~le~l~~~~~- 172 (509)
T COG0696 98 LNAI-DEVKANGSALHLMGLVSDGGVHSHIDHLLALIELAAKNGMKKVYLHAFLD---GRDTAPRSALQYLEELEAKAK- 172 (509)
T ss_pred HHHH-HHhhhcCceEEEEecccCCcccchHHHHHHHHHHHHhcCCcEEEEEEecC---CCCCCchhHHHHHHHHHHHhh-
Confidence 3444 4455677788887777664 77778899999999999886 466655554 35655555444 666777777
Q ss_pred cCC
Q 023640 232 SYN 234 (279)
Q Consensus 232 ~~g 234 (279)
++|
T Consensus 173 ~~g 175 (509)
T COG0696 173 EYG 175 (509)
T ss_pred ccC
Confidence 675
No 265
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=29.94 E-value=1e+02 Score=25.26 Aligned_cols=54 Identities=20% Similarity=0.204 Sum_probs=32.3
Q ss_pred HHHHHHHH--HHHhccCCCceEEEecCCccccCHHHHHHHHHHHhC--CCCCCCCCeEEEEcCCch
Q 023640 51 SGEIVEQL--VHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG--LPFQVSPKRITVSTVGIV 112 (279)
Q Consensus 51 ~~ei~~~i--~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~--~g~~~~~~~v~i~TNG~~ 112 (279)
.+++.+.+ .+... .+-+.+.++. |+|++. .....+++.+++ .| +.+.+..+-+.
T Consensus 60 ~~~~~~~i~~~~~~~-~g~~V~~l~~-GDP~~~-~~~~~l~~~l~~~~~g-----i~v~iiPGiSs 117 (210)
T PF00590_consen 60 YDEIAEIIEAIEAAK-EGKDVVVLVS-GDPLFF-STGSYLVRALRAEERG-----IEVEIIPGISS 117 (210)
T ss_dssp HHHHHHHHHHHHHHH-TTSEEEEEES-BSTTSS-SSHHHHHHHHHHHHTT-----CEEEEE--TTH
T ss_pred hhHHHHHHHHHHHHh-ccCCEEEeCC-CCCCcc-cHHHHHHHHHHhhcCC-----CceEEEecCcH
Confidence 44555555 33222 2334566777 999996 656677777777 67 67877765443
No 266
>COG1647 Esterase/lipase [General function prediction only]
Probab=29.89 E-value=1.3e+02 Score=25.74 Aligned_cols=75 Identities=17% Similarity=0.248 Sum_probs=44.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCC-CCCcCCCCH----HHHHHHHHHHHhcCCeE-EEecc-cccc
Q 023640 173 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGS-VSQFRTSSD----DKVSSFQKILRGSYNIR-TTVRK-QMGQ 245 (279)
Q Consensus 173 ~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~-~~~~~~~~~----e~l~~~~~~l~~~~gi~-v~vr~-~~g~ 245 (279)
+.++-|+..+..+++.|+++|.+.|..+..=.|..+|- ...+...+. ++....++.|+ +.|.+ |.+.. .+|.
T Consensus 18 VLllHGFTGt~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW~~~v~d~Y~~L~-~~gy~eI~v~GlSmGG 96 (243)
T COG1647 18 VLLLHGFTGTPRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDWWEDVEDGYRDLK-EAGYDEIAVVGLSMGG 96 (243)
T ss_pred EEEEeccCCCcHHHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHHHHHHHHHHHHHH-HcCCCeEEEEeecchh
Confidence 45567888899999999999999987655322333321 111222232 34455566677 56764 55443 5665
Q ss_pred ccc
Q 023640 246 DIS 248 (279)
Q Consensus 246 ~~~ 248 (279)
-..
T Consensus 97 v~a 99 (243)
T COG1647 97 VFA 99 (243)
T ss_pred HHH
Confidence 443
No 267
>PLN02625 uroporphyrin-III C-methyltransferase
Probab=29.80 E-value=1.6e+02 Score=25.45 Aligned_cols=54 Identities=22% Similarity=0.138 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCc
Q 023640 50 SSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGI 111 (279)
Q Consensus 50 ~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~ 111 (279)
..+++.+.+.+.... +-+.+.++. |+|+++ .....+++.+++.| ..+.+...-+
T Consensus 77 ~~~~~~~~i~~~~~~-g~~Vvvl~~-GDP~~y-s~~~~l~~~l~~~~-----~~veiiPGIS 130 (263)
T PLN02625 77 TQEEIHELLLSFAEA-GKTVVRLKG-GDPLVF-GRGGEEMDALRKNG-----IPVTVVPGIT 130 (263)
T ss_pred CHHHHHHHHHHHHHC-CCeEEEEcC-CCchhh-hhHHHHHHHHHHCC-----CCEEEECCcc
Confidence 455666666554332 334455677 999995 66667788887776 5677776543
No 268
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=29.28 E-value=53 Score=21.53 Aligned_cols=56 Identities=5% Similarity=0.011 Sum_probs=34.7
Q ss_pred CCcHHHHHHHHHHHhhCCcEE-EEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEE
Q 023640 180 NDEEQHAHQLGKLLETFQVVV-NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 238 (279)
Q Consensus 180 nd~~~~l~~l~~~l~~~~~~i-~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~ 238 (279)
.|.+..+.++.+.+.+.+.++ .+..+... . ...-....+..+.+.+.|+ +.|+.+.
T Consensus 9 ~d~pG~La~v~~~l~~~~inI~~i~~~~~~-~-~~~~rl~~~~~~~~~~~L~-~~G~~v~ 65 (66)
T cd04908 9 ENKPGRLAAVTEILSEAGINIRALSIADTS-E-FGILRLIVSDPDKAKEALK-EAGFAVK 65 (66)
T ss_pred cCCCChHHHHHHHHHHCCCCEEEEEEEecC-C-CCEEEEEECCHHHHHHHHH-HCCCEEE
Confidence 346778999999999888774 34444432 1 2221222244567778888 7787764
No 269
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=29.19 E-value=4.5e+02 Score=25.74 Aligned_cols=28 Identities=11% Similarity=0.224 Sum_probs=22.5
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecCC
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGMG 76 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~G 76 (279)
..++.+++++.+.+..+. |++.+++.- |
T Consensus 290 ~~lt~e~~~d~ieeQAeq-GVDf~TIHa-G 317 (607)
T PRK09284 290 EDLTWEIFRDTLIEQAEQ-GVDYFTIHA-G 317 (607)
T ss_pred hhCCHHHHHHHHHHHHHh-CCCEEEECh-h
Confidence 357888888888887764 899999988 7
No 270
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=29.08 E-value=3.7e+02 Score=23.46 Aligned_cols=58 Identities=16% Similarity=0.265 Sum_probs=37.8
Q ss_pred CCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEE
Q 023640 179 VNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT 237 (279)
Q Consensus 179 ~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v 237 (279)
.-++.+.+.++++.+++.+.. +..--|.|......|..+..+.+..+.+..+ +.|+.+
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~-~~Gl~~ 94 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGD-KYNLPV 94 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHH-HcCCCE
Confidence 345678888888888888765 3333344432223455556777888888887 788764
No 271
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=28.72 E-value=83 Score=30.28 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=23.9
Q ss_pred CCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 023640 178 GVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG 209 (279)
Q Consensus 178 g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~ 209 (279)
|+.|--.++.++++++++.|.. ++++|++|.+
T Consensus 21 GiGDfg~dl~~~id~~~~~G~~~~qilPl~~~~ 53 (497)
T PRK14508 21 GIGDFGKGAYEFIDFLAEAGQSYWQILPLGPTG 53 (497)
T ss_pred CCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 4555444788888888888876 8888888865
No 272
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=27.97 E-value=5.3e+02 Score=26.96 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=25.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhhCCcEEEEEe
Q 023640 173 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 204 (279)
Q Consensus 173 ~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~ 204 (279)
+.++++.+-+..++.+|.++|+.+|.++..+|
T Consensus 647 VNli~~~~~~~gD~~eik~lL~~~Gl~v~~vp 678 (917)
T PRK14477 647 VNILPGAHLTPADVEEIKEIVEAFGLDPVVVP 678 (917)
T ss_pred EEEeCCCCCChhhHHHHHHHHHHcCCceEEec
Confidence 34457766567899999999999999877665
No 273
>PRK10785 maltodextrin glucosidase; Provisional
Probab=27.92 E-value=1.9e+02 Score=28.44 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=37.4
Q ss_pred cHHHHHHHHHHHhhCCcE-EEEEecCCCCCCC-----CcCC-----CCHHHHHHHHHHHHhcCCeEEEe
Q 023640 182 EEQHAHQLGKLLETFQVV-VNLIPFNPIGSVS-----QFRT-----SSDDKVSSFQKILRGSYNIRTTV 239 (279)
Q Consensus 182 ~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~-----~~~~-----~~~e~l~~~~~~l~~~~gi~v~v 239 (279)
+.+-+.+=.+.|+++|+. |.+.|..+....+ +|.. -+.++++++.+.+. +.|+.|.+
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH-~rGikVil 244 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQ-QRGMRLVL 244 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHH-HCCCEEEE
Confidence 344555555777888887 7777765543222 2221 15789999999999 88998643
No 274
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=27.82 E-value=4.1e+02 Score=23.61 Aligned_cols=77 Identities=13% Similarity=0.151 Sum_probs=37.4
Q ss_pred cHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHH-HHHHHHHHHhcC-CeEEEecccc---cccccccccccc
Q 023640 182 EEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDK-VSSFQKILRGSY-NIRTTVRKQM---GQDISGACGQLV 255 (279)
Q Consensus 182 ~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~-l~~~~~~l~~~~-gi~v~vr~~~---g~~~~~~cg~~~ 255 (279)
+.++..++++..++.|+. +-++ .|. .++ ++.++ ++.+..+++ .. ++++.+-+.+ |.++.+..-.-+
T Consensus 88 ~t~~ai~~a~~A~~~Gad~vlv~--~P~----y~~-~~~~~l~~yf~~va~-a~~~lPv~iYn~P~~tg~~l~~~~l~~L 159 (309)
T cd00952 88 NTRDTIARTRALLDLGADGTMLG--RPM----WLP-LDVDTAVQFYRDVAE-AVPEMAIAIYANPEAFKFDFPRAAWAEL 159 (309)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEC--CCc----CCC-CCHHHHHHHHHHHHH-hCCCCcEEEEcCchhcCCCCCHHHHHHH
Confidence 456777778888877776 3332 232 112 33444 444444455 55 4666655432 334443333333
Q ss_pred ccCcCccCCCC
Q 023640 256 VNLPDKISAKS 266 (279)
Q Consensus 256 ~~~~~~~~~~~ 266 (279)
..+|.-+.-|.
T Consensus 160 ~~~pnivgiKd 170 (309)
T cd00952 160 AQIPQVVAAKY 170 (309)
T ss_pred hcCCCEEEEEe
Confidence 34554333333
No 275
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=27.60 E-value=6e+02 Score=25.02 Aligned_cols=158 Identities=11% Similarity=0.101 Sum_probs=86.3
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecCCc------cccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC-----ch--h
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGE------PLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG-----IV--H 113 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GE------Pll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG-----~~--~ 113 (279)
..++.++.+..+..+.+ .|+..|-++| |- ++++.+ -.+.++.+++.. +...+.....| +. +
T Consensus 16 ~~~~t~dkl~ia~~L~~-~Gv~~IE~~G-Gatfd~~~~f~~e~-~~e~l~~l~~~~---~~~~l~~L~Rg~N~~G~~~yp 89 (582)
T TIGR01108 16 TRMRTEDMLPIAEKLDD-VGYWSLEVWG-GATFDACIRFLNED-PWERLRELKKAL---PNTPLQMLLRGQNLLGYRHYA 89 (582)
T ss_pred ccCCHHHHHHHHHHHHH-cCCCEEEecC-CcccccccccCCCC-HHHHHHHHHHhC---CCCEEEEEEccccccccccCc
Confidence 46788888888877665 3888898887 73 556533 245666666531 12344444333 21 1
Q ss_pred h------hHHHhccCCCceE-EEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEE--EEEeCCCCCcHH
Q 023640 114 A------INKFHSDLPGLNL-AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE--YIMLDGVNDEEQ 184 (279)
Q Consensus 114 ~------~~~l~~~~~~~~i-~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~--~vv~~g~nd~~~ 184 (279)
+ .+...+. .+++ .+. ++.++ .+.+..++ +++++.|..+.+. ++..| ..+.+
T Consensus 90 ddvv~~~v~~a~~~--Gvd~irif-~~lnd--------------~~n~~~~i-~~ak~~G~~v~~~i~~t~~p--~~~~~ 149 (582)
T TIGR01108 90 DDVVERFVKKAVEN--GMDVFRIF-DALND--------------PRNLQAAI-QAAKKHGAHAQGTISYTTSP--VHTLE 149 (582)
T ss_pred hhhHHHHHHHHHHC--CCCEEEEE-EecCc--------------HHHHHHHH-HHHHHcCCEEEEEEEeccCC--CCCHH
Confidence 1 1222222 2343 222 22222 12445556 5667778766644 33333 23567
Q ss_pred HHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEE
Q 023640 185 HAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 238 (279)
Q Consensus 185 ~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~ 238 (279)
.+.++++.+.+.|+. +.+- .. ....+++++.++.+.+++..++++.
T Consensus 150 ~~~~~~~~~~~~Gad~I~i~---Dt-----~G~~~P~~v~~lv~~lk~~~~~pi~ 196 (582)
T TIGR01108 150 TYLDLAEELLEMGVDSICIK---DM-----AGILTPKAAYELVSALKKRFGLPVH 196 (582)
T ss_pred HHHHHHHHHHHcCCCEEEEC---CC-----CCCcCHHHHHHHHHHHHHhCCCceE
Confidence 888899888888876 4432 11 1124667777777777644555443
No 276
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed
Probab=27.55 E-value=1.2e+02 Score=25.88 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=22.9
Q ss_pred HHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhC
Q 023640 56 EQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG 94 (279)
Q Consensus 56 ~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~ 94 (279)
+.+.+.... |-+.+.+++ |+|++. .....+++.+.+
T Consensus 89 ~~i~~~~~~-G~~Vv~L~~-GDP~iy-st~~~l~~~l~~ 124 (241)
T PRK05990 89 EAVAAHLDA-GRDVAVICE-GDPFFY-GSYMYLHDRLAP 124 (241)
T ss_pred HHHHHHHHC-CCeEEEEeC-CCcHHH-hHHHHHHHHHhc
Confidence 444443332 446677888 999995 666667776644
No 277
>PRK05576 cobalt-precorrin-2 C(20)-methyltransferase; Validated
Probab=27.45 E-value=1.6e+02 Score=24.76 Aligned_cols=51 Identities=8% Similarity=0.033 Sum_probs=31.6
Q ss_pred HHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCc
Q 023640 53 EIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGI 111 (279)
Q Consensus 53 ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~ 111 (279)
++.+.+.+... .+-+.+.++. |+|++. .....+++.+++.| ..+.+...=+
T Consensus 78 ~~~~~i~~~~~-~g~~V~~l~~-GDP~~y-~~~~~l~~~~~~~~-----~~v~viPGiS 128 (229)
T PRK05576 78 ENAEEIAAEAE-EGKNVAFITL-GDPNLY-STFSHLLEYLKCHD-----IEVETVPGIS 128 (229)
T ss_pred HHHHHHHHHHH-cCCcEEEEeC-cCcccc-ccHHHHHHHHHhCC-----CCEEEeCChh
Confidence 44555544332 2335566777 999995 66667788887665 4677665433
No 278
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=27.35 E-value=2.3e+02 Score=24.63 Aligned_cols=58 Identities=7% Similarity=0.116 Sum_probs=40.6
Q ss_pred CCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEE
Q 023640 179 VNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT 237 (279)
Q Consensus 179 ~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v 237 (279)
.-++++++.++++.+++.|+. +.---|.|...-..|+.+..+.++.+.+..+ ++|+.+
T Consensus 24 ~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~-~~Gl~~ 82 (250)
T PRK13397 24 SIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQ-EFGLLS 82 (250)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHH-HcCCCE
Confidence 346788999999999988875 3222355543334566677788888888888 788864
No 279
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=27.21 E-value=98 Score=24.25 Aligned_cols=50 Identities=10% Similarity=0.234 Sum_probs=25.4
Q ss_pred HHHHHHHhhCCcE-EEEEecCCCCCCCCcCCC--CHHHHHHHHHHHHhcCCeEEEe
Q 023640 187 HQLGKLLETFQVV-VNLIPFNPIGSVSQFRTS--SDDKVSSFQKILRGSYNIRTTV 239 (279)
Q Consensus 187 ~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~--~~e~l~~~~~~l~~~~gi~v~v 239 (279)
.++.+.+++.+.. |-+.||.-.. .+...| ..+-+.++.+.|+ ..|++|.-
T Consensus 61 ~eI~~~a~kv~~~~ivlyPyAHLS--s~La~P~~A~~iL~~le~~L~-~~g~eV~r 113 (138)
T PF08915_consen 61 EEIKWVAKKVKAKRIVLYPYAHLS--SSLASPDVAVEILKKLEERLK-SRGFEVYR 113 (138)
T ss_dssp HHHHHHHHHTT-SEEEEEE-GGGS--SSB--HHHHHHHHHHHHHHHH-HTT-EEEE
T ss_pred HHHHHHHHhcCCCEEEEeCccccc--CCcCChHHHHHHHHHHHHHHH-hCCCeEEE
Confidence 3444445555654 7777776652 233222 3445667777776 66777643
No 280
>PRK14705 glycogen branching enzyme; Provisional
Probab=26.52 E-value=1.9e+02 Score=31.24 Aligned_cols=54 Identities=17% Similarity=0.297 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhCCcE-EEEEecC--CCCCC-----CCcCC-----CCHHHHHHHHHHHHhcCCeEEEe
Q 023640 185 HAHQLGKLLETFQVV-VNLIPFN--PIGSV-----SQFRT-----SSDDKVSSFQKILRGSYNIRTTV 239 (279)
Q Consensus 185 ~l~~l~~~l~~~~~~-i~l~~~~--p~~~~-----~~~~~-----~~~e~l~~~~~~l~~~~gi~v~v 239 (279)
-.++++++++++|+. |.++|.. |.+.. .+|.. -+.++++.+.+.+. +.|+.|.+
T Consensus 767 l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H-~~GI~VIL 833 (1224)
T PRK14705 767 LAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLH-QAGIGVLL 833 (1224)
T ss_pred HHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHH-HCCCEEEE
Confidence 345678999999987 9999874 33211 11211 26899999999999 88988643
No 281
>COG4470 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.23 E-value=25 Score=26.34 Aligned_cols=12 Identities=25% Similarity=0.802 Sum_probs=9.3
Q ss_pred CCcCccCccccC
Q 023640 29 VGCKMGCNFCAT 40 (279)
Q Consensus 29 ~gCNl~C~yC~~ 40 (279)
.-||+.|.|=-.
T Consensus 86 EyCnfGCaYFVl 97 (126)
T COG4470 86 EYCNFGCAYFVL 97 (126)
T ss_pred HHhcCCchhhhh
Confidence 359999998754
No 282
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=25.90 E-value=94 Score=26.75 Aligned_cols=48 Identities=10% Similarity=0.102 Sum_probs=29.2
Q ss_pred HHHHhhCCcE-EEEEecCCCC-CCCCcC----------CCCHHHHHHHHHHHHhcCCeEEE
Q 023640 190 GKLLETFQVV-VNLIPFNPIG-SVSQFR----------TSSDDKVSSFQKILRGSYNIRTT 238 (279)
Q Consensus 190 ~~~l~~~~~~-i~l~~~~p~~-~~~~~~----------~~~~e~l~~~~~~l~~~~gi~v~ 238 (279)
++.|+++|+. |.+.|..+.+ ....|. --+.++++++.+.+. +.|+.|.
T Consensus 10 Ldyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h-~~gi~Vi 69 (316)
T PF00128_consen 10 LDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAH-KRGIKVI 69 (316)
T ss_dssp HHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHH-HTTCEEE
T ss_pred hHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccc-cccceEE
Confidence 4566667765 6666544331 111111 126889999999999 8899764
No 283
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=25.87 E-value=2.2e+02 Score=28.17 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhCCcE-EEEEecCCCC--C-----CCCcCC-----CCHHHHHHHHHHHHhcCCeEEEe
Q 023640 185 HAHQLGKLLETFQVV-VNLIPFNPIG--S-----VSQFRT-----SSDDKVSSFQKILRGSYNIRTTV 239 (279)
Q Consensus 185 ~l~~l~~~l~~~~~~-i~l~~~~p~~--~-----~~~~~~-----~~~e~l~~~~~~l~~~~gi~v~v 239 (279)
-++++++.|+++|+. |.++|..... . ..++-. -+.++++++.+.+. +.|+.|.+
T Consensus 158 i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H-~~Gi~Vil 224 (613)
T TIGR01515 158 LADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACH-QAGIGVIL 224 (613)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHH-HCCCEEEE
Confidence 345567888999987 8888864321 1 111111 25889999999999 88998643
No 284
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=25.74 E-value=4.9e+02 Score=23.34 Aligned_cols=87 Identities=7% Similarity=0.089 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHH
Q 023640 149 FPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQK 227 (279)
Q Consensus 149 ~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~ 227 (279)
...+..++.++...+..+..+.+++. + .+.++..++++.+.+.++. +.+....|............+.+.++.+
T Consensus 84 ~g~d~~~~~i~~~~~~~~~pvi~sI~---g--~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~ 158 (334)
T PRK07565 84 VGPEEYLELIRRAKEAVDIPVIASLN---G--SSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILR 158 (334)
T ss_pred cCHHHHHHHHHHHHHhcCCcEEEEec---c--CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHH
Confidence 34666677665544444555555542 2 2556778888888877754 4443222211111111112233444545
Q ss_pred HHHhcCCeEEEec
Q 023640 228 ILRGSYNIRTTVR 240 (279)
Q Consensus 228 ~l~~~~gi~v~vr 240 (279)
.+++...++|.++
T Consensus 159 ~v~~~~~iPV~vK 171 (334)
T PRK07565 159 AVKSAVSIPVAVK 171 (334)
T ss_pred HHHhccCCcEEEE
Confidence 5543445665555
No 285
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=25.62 E-value=4.2e+02 Score=22.48 Aligned_cols=68 Identities=15% Similarity=0.099 Sum_probs=41.7
Q ss_pred HHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeE
Q 023640 160 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIR 236 (279)
Q Consensus 160 ~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~ 236 (279)
+.+++.|.+..+ .+-|+ ...+.+..+++.+. .+-++..+|...+..+.+.+-+.+.++.+.+. +.+.+
T Consensus 104 ~~Ir~~g~k~Gl--alnP~--T~~~~i~~~l~~vD----~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~-~~~~~ 171 (223)
T PRK08745 104 QLIKSHGCQAGL--VLNPA--TPVDILDWVLPELD----LVLVMSVNPGFGGQAFIPSALDKLRAIRKKID-ALGKP 171 (223)
T ss_pred HHHHHCCCceeE--EeCCC--CCHHHHHHHHhhcC----EEEEEEECCCCCCccccHHHHHHHHHHHHHHH-hcCCC
Confidence 344566766553 33443 34455555544332 35667778866677777778888888888887 55544
No 286
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=25.39 E-value=4.1e+02 Score=22.95 Aligned_cols=78 Identities=14% Similarity=0.094 Sum_probs=47.6
Q ss_pred ccCCCHHHHHHHHHHHhccCCCceEEEecCCccc------cCH----HHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhh
Q 023640 46 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPL------NNY----AALVEAVRIMTGL-PFQVSPKRITVSTVGIVHA 114 (279)
Q Consensus 46 ~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPl------l~~----~~i~~~i~~~~~~-g~~~~~~~v~i~TNG~~~~ 114 (279)
+...+++++++.+.+.... |.+.|-+ | |+.+ ... +++..+++.+++. + ..+++.|-....
T Consensus 17 ~~~~~~~~~~~~a~~~~~~-GA~iIDI-G-~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~-----~plsiDT~~~~v- 87 (257)
T TIGR01496 17 GRFLSVDKAVAHAERMLEE-GADIIDV-G-GESTRPGADRVSPEEELNRVVPVIKALRDQPD-----VPISVDTYRAEV- 87 (257)
T ss_pred CCCCCHHHHHHHHHHHHHC-CCCEEEE-C-CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCC-----CeEEEeCCCHHH-
Confidence 3456889999888877653 7777777 5 5544 221 2477778888776 5 679999965321
Q ss_pred hHHHhccCCCceEEEEeCCC
Q 023640 115 INKFHSDLPGLNLAVSLHAP 134 (279)
Q Consensus 115 ~~~l~~~~~~~~i~iSld~~ 134 (279)
++.-++. ..++.-|+.+.
T Consensus 88 i~~al~~--G~~iINsis~~ 105 (257)
T TIGR01496 88 ARAALEA--GADIINDVSGG 105 (257)
T ss_pred HHHHHHc--CCCEEEECCCC
Confidence 2222333 35655566543
No 287
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.37 E-value=1.2e+02 Score=19.62 Aligned_cols=37 Identities=14% Similarity=0.079 Sum_probs=23.6
Q ss_pred eEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC
Q 023640 69 NVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 110 (279)
Q Consensus 69 ~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG 110 (279)
.+.|+| +.-+.+.+++..+|+.|+..+...+.-.||-
T Consensus 3 ~ll~~g-----~~~~el~~~l~~~r~~~~~~~~kAvlT~tN~ 39 (58)
T PF12646_consen 3 FLLFSG-----FSGEELDKFLDALRKAGIPIPLKAVLTPTNI 39 (58)
T ss_pred EEEECC-----CCHHHHHHHHHHHHHcCCCcceEEEECCCcc
Confidence 356777 3346788889999988765444444444444
No 288
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=25.18 E-value=1.3e+02 Score=25.03 Aligned_cols=52 Identities=17% Similarity=0.335 Sum_probs=29.4
Q ss_pred CCcCccCccccCCCCCCccCCCHHHHHHHHHHHh--ccCCCceEEEecCCccccC
Q 023640 29 VGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS--RLSNIRNVVFMGMGEPLNN 81 (279)
Q Consensus 29 ~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~--~~~~~~~I~fsG~GEPll~ 81 (279)
.||--.|..|...+......++.+++........ .......+.|.- |||.-+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~-Gd~~~~ 57 (235)
T PRK11161 4 GGCAIHCQDCSISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKA-GDELKS 57 (235)
T ss_pred CCCCCCcccccccccccccCCCHHHHHHHHHhhhhceeecCCCEeECC-CCCcce
Confidence 7899999999875443334566655554333221 111234566666 666443
No 289
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=25.12 E-value=2.5e+02 Score=21.63 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhccCCCceEEEecCC---------------ccccCHHHHHHHHHHHhCCCC
Q 023640 51 SGEIVEQLVHASRLSNIRNVVFMGMG---------------EPLNNYAALVEAVRIMTGLPF 97 (279)
Q Consensus 51 ~~ei~~~i~~~~~~~~~~~I~fsG~G---------------EPll~~~~i~~~i~~~~~~g~ 97 (279)
++++++.+++. +++.|++.. | =|-|..+.+.++++.+++.|+
T Consensus 2 ~~~~~~~lk~~----~v~si~i~a-~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Gi 58 (132)
T PF14871_consen 2 PEQFVDTLKEA----HVNSITIFA-KCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGI 58 (132)
T ss_pred HHHHHHHHHHh----CCCEEEEEc-ccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCC
Confidence 45566666544 456666633 2 345555778999999999994
No 290
>PRK12568 glycogen branching enzyme; Provisional
Probab=25.09 E-value=2.5e+02 Score=28.47 Aligned_cols=56 Identities=20% Similarity=0.326 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhCCcE-EEEEecC--CCCCCCCc------C----CCCHHHHHHHHHHHHhcCCeEEEec
Q 023640 184 QHAHQLGKLLETFQVV-VNLIPFN--PIGSVSQF------R----TSSDDKVSSFQKILRGSYNIRTTVR 240 (279)
Q Consensus 184 ~~l~~l~~~l~~~~~~-i~l~~~~--p~~~~~~~------~----~~~~e~l~~~~~~l~~~~gi~v~vr 240 (279)
+-.+++++.|+++|+. |.++|.. |.+..-.| . --+.++++.+.+.+. +.|+.|.+-
T Consensus 270 ~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H-~~Gi~VIlD 338 (730)
T PRK12568 270 TLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACH-RAGIGVILD 338 (730)
T ss_pred HHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHH-HCCCEEEEE
Confidence 3345678899999987 9998863 33211111 1 136889999999999 889986443
No 291
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=25.06 E-value=1.2e+02 Score=25.97 Aligned_cols=43 Identities=12% Similarity=0.083 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCC
Q 023640 52 GEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL 95 (279)
Q Consensus 52 ~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~ 95 (279)
+.+.+.+..+.....---|++.| -|||+.+.-|..+++.+++.
T Consensus 78 dR~~Ev~~~l~~~~~~iIVNvQG-DeP~i~p~~I~~~~~~L~~~ 120 (247)
T COG1212 78 DRLAEVVEKLGLPDDEIIVNVQG-DEPFIEPEVIRAVAENLENS 120 (247)
T ss_pred HHHHHHHHhcCCCcceEEEEccC-CCCCCCHHHHHHHHHHHHhC
Confidence 44555444432111123688999 99999988888888888865
No 292
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=25.03 E-value=6.8e+02 Score=24.77 Aligned_cols=165 Identities=9% Similarity=0.080 Sum_probs=86.6
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecCCccc------cCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC-----c--hh
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPL------NNYAALVEAVRIMTGLPFQVSPKRITVSTVG-----I--VH 113 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPl------l~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG-----~--~~ 113 (279)
..++.++++..+....+ .|+..+-++| |-=+ ++-+- -+-++.+++. +++..+.+..=| + .+
T Consensus 21 tr~~t~d~~~ia~~~d~-~g~~siE~~g-Gatfd~~~rfl~edp-werl~~~r~~---~pnt~lqmL~Rg~N~vGy~~~~ 94 (596)
T PRK14042 21 TRMRTEDMLPICNKMDD-VGFWAMEVWG-GATFDACLRFLKEDP-WSRLRQLRQA---LPNTQLSMLLRGQNLLGYRNYA 94 (596)
T ss_pred cCCCHHHHHHHHHHHHh-cCCCEEEeeC-CcccceeecccCCCH-HHHHHHHHHh---CCCCceEEEeccccccccccCC
Confidence 45677888777766554 4788888888 7433 11000 1334444433 122344444422 1 12
Q ss_pred h--hHHHhccC--CCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHH
Q 023640 114 A--INKFHSDL--PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQL 189 (279)
Q Consensus 114 ~--~~~l~~~~--~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l 189 (279)
+ ++.+.+.. ..+++.=-+|+.++ .+....++ +.+++.|..+...+.++.....+.+.+.++
T Consensus 95 d~vv~~~v~~a~~~Gidv~Rifd~lnd--------------~~n~~~~i-~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ 159 (596)
T PRK14042 95 DDVVRAFVKLAVNNGVDVFRVFDALND--------------ARNLKVAI-DAIKSHKKHAQGAICYTTSPVHTLDNFLEL 159 (596)
T ss_pred hHHHHHHHHHHHHcCCCEEEEcccCcc--------------hHHHHHHH-HHHHHcCCEEEEEEEecCCCCCCHHHHHHH
Confidence 1 11111111 12444312233332 33444556 556677877665533433334577889999
Q ss_pred HHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEEec
Q 023640 190 GKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 240 (279)
Q Consensus 190 ~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~vr 240 (279)
++.+.+.|+. +.+- . .....++++..++.+.+++..++++.+.
T Consensus 160 ak~l~~~Gad~I~Ik---D-----taG~l~P~~v~~lv~alk~~~~ipi~~H 203 (596)
T PRK14042 160 GKKLAEMGCDSIAIK---D-----MAGLLTPTVTVELYAGLKQATGLPVHLH 203 (596)
T ss_pred HHHHHHcCCCEEEeC---C-----cccCCCHHHHHHHHHHHHhhcCCEEEEE
Confidence 9999988876 4442 1 1122467777888777775556665444
No 293
>PRK10444 UMP phosphatase; Provisional
Probab=25.00 E-value=77 Score=27.26 Aligned_cols=38 Identities=11% Similarity=0.023 Sum_probs=26.5
Q ss_pred CceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchh
Q 023640 67 IRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH 113 (279)
Q Consensus 67 ~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~ 113 (279)
++++.+.| ++|. +...++++.+++.| ..+.+.||....
T Consensus 8 lDGtL~~~-~~~~---p~a~~~l~~L~~~g-----~~~~~~Tn~~~~ 45 (248)
T PRK10444 8 IDGVLMHD-NVAV---PGAAEFLHRILDKG-----LPLVLLTNYPSQ 45 (248)
T ss_pred CCCceEeC-CeeC---ccHHHHHHHHHHCC-----CeEEEEeCCCCC
Confidence 45666777 6552 33458888888887 688888888654
No 294
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=24.98 E-value=1.2e+02 Score=22.03 Aligned_cols=34 Identities=9% Similarity=0.142 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhcc
Q 023640 83 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSD 121 (279)
Q Consensus 83 ~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~~ 121 (279)
+.+.++++.+++.| ..+.+.||+.......+.+.
T Consensus 27 ~~~~~~l~~l~~~g-----~~i~ivS~~~~~~~~~~~~~ 60 (139)
T cd01427 27 PGVKEALKELKEKG-----IKLALATNKSRREVLELLEE 60 (139)
T ss_pred cCHHHHHHHHHHCC-----CeEEEEeCchHHHHHHHHHH
Confidence 55788999999887 68999999876555444443
No 295
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=24.91 E-value=74 Score=25.79 Aligned_cols=33 Identities=9% Similarity=0.165 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhc
Q 023640 83 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHS 120 (279)
Q Consensus 83 ~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~ 120 (279)
+.+.++++.+++.| ..+.+.||+.........+
T Consensus 95 ~~~~~~L~~L~~~g-----~~~~i~Sn~~~~~~~~~l~ 127 (198)
T TIGR01428 95 PDVPAGLRALKERG-----YRLAILSNGSPAMLKSLVK 127 (198)
T ss_pred CCHHHHHHHHHHCC-----CeEEEEeCCCHHHHHHHHH
Confidence 45778999999888 7899999997654444333
No 296
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=24.90 E-value=78 Score=23.76 Aligned_cols=29 Identities=10% Similarity=0.090 Sum_probs=23.0
Q ss_pred ccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCc
Q 023640 77 EPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGI 111 (279)
Q Consensus 77 EPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~ 111 (279)
+-.+. +.+.++++.+++.| ..+.+.||+.
T Consensus 23 ~~~~~-~~v~~~l~~L~~~g-----~~l~i~Sn~~ 51 (132)
T TIGR01662 23 ERILY-PEVPDALAELKEAG-----YKVVIVTNQS 51 (132)
T ss_pred HheeC-CCHHHHHHHHHHCC-----CEEEEEECCc
Confidence 44443 55788999999888 7999999986
No 297
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.77 E-value=4e+02 Score=22.97 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhCCeEEEEEEE-eCCCCCcHHHHHHHHHHHh
Q 023640 151 LEKLMNALKEYQKNSQQKIFIEYIM-LDGVNDEEQHAHQLGKLLE 194 (279)
Q Consensus 151 ~~~i~~~l~~~~~~~~~~v~i~~vv-~~g~nd~~~~l~~l~~~l~ 194 (279)
++.+.+-+ .++.+.|++..--+.+ +.+.+=+.+|+..|.+++.
T Consensus 39 ~~~l~~i~-~~c~~~GI~~lTvYaFS~EN~~R~~~EV~~Lm~L~~ 82 (239)
T PRK14839 39 VEAIRRVV-EAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLMRLLR 82 (239)
T ss_pred HHHHHHHH-HHHHHcCCCEEEEEEechhhcCCCHHHHHHHHHHHH
Confidence 44555555 6667778775544555 3445556778877776554
No 298
>PLN02635 disproportionating enzyme
Probab=24.76 E-value=1.1e+02 Score=29.88 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=24.3
Q ss_pred CCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCC
Q 023640 178 GVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG 209 (279)
Q Consensus 178 g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~ 209 (279)
|+.|--+...++++++++.|.. ++++|++|.+
T Consensus 44 GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt~ 76 (538)
T PLN02635 44 GIGDLGDEAFRFLDWLASTGCSVWQVLPLVPPG 76 (538)
T ss_pred CCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 4555544566899999998876 8999998874
No 299
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=24.74 E-value=1.4e+02 Score=27.92 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=19.7
Q ss_pred CCCCCCccccCccCCCCCceEEEEeccCCcCccCccccCCC
Q 023640 2 RYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGT 42 (279)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~~~l~i~~~~gCNl~C~yC~~~~ 42 (279)
+|+..||.-.++.+ + + .-|+-+|.+||-+.
T Consensus 67 e~~~~lg~~~e~~~--~------~---~~~~~~d~~c~p~l 96 (414)
T COG1625 67 EPDEDLGLEFEEVL--G------A---KQCGNGDTFCYPDL 96 (414)
T ss_pred cccccccccccccc--c------e---eecCCCCcccCcch
Confidence 45555665555444 1 1 46999999999754
No 300
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=24.65 E-value=2.9e+02 Score=24.47 Aligned_cols=57 Identities=12% Similarity=0.042 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHhccCCCceEEEe--c--------CCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCc
Q 023640 49 LSSGEIVEQLVHASRLSNIRNVVFM--G--------MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGI 111 (279)
Q Consensus 49 ~~~~ei~~~i~~~~~~~~~~~I~fs--G--------~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~ 111 (279)
-+++++.+.+.+.... |.+.|-+. | .|.+.+..+.+.++++.+++.| ..+.+..++.
T Consensus 117 ~~~~~~~~~v~~~~~~-G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g-----~~v~~H~~~~ 183 (342)
T cd01299 117 DGVEEVRAAVREQLRR-GADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAG-----LYVAAHAYGA 183 (342)
T ss_pred cCHHHHHHHHHHHHHh-CCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcC-----CEEEEEeCCH
Confidence 3578888888876643 66555433 3 1124677788999999999988 6777777764
No 301
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=24.58 E-value=1e+02 Score=26.27 Aligned_cols=18 Identities=11% Similarity=0.145 Sum_probs=7.8
Q ss_pred EEeCCCCCcHHHHHHHHH
Q 023640 174 IMLDGVNDEEQHAHQLGK 191 (279)
Q Consensus 174 vv~~g~nd~~~~l~~l~~ 191 (279)
-++|++.|.+..+++..+
T Consensus 7 HIlp~iDDGp~s~eesl~ 24 (254)
T COG4464 7 HILPDIDDGPKSLEESLA 24 (254)
T ss_pred cccCCCCCCCCcHHHHHH
Confidence 344555444444443333
No 302
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=24.36 E-value=4e+02 Score=22.77 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEE
Q 023640 183 EQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 238 (279)
Q Consensus 183 ~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~ 238 (279)
...++.+++.+++.++. ++++|+.-....+-......+.-..-.++++ +.|+++.
T Consensus 178 yP~~d~vi~~l~~~~~~~v~L~PlMlvAG~Ha~nDMasddedswk~il~-~~G~~v~ 233 (265)
T COG4822 178 YPLVDTVIEYLRKNGIKEVHLIPLMLVAGDHAKNDMASDDEDSWKNILE-KNGFKVE 233 (265)
T ss_pred CCcHHHHHHHHHHcCCceEEEeeeEEeechhhhhhhcccchHHHHHHHH-hCCceeE
Confidence 34688999999999886 9999987652111111111111245567788 7898764
No 303
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=24.34 E-value=98 Score=25.96 Aligned_cols=93 Identities=15% Similarity=0.114 Sum_probs=52.5
Q ss_pred Cc-cccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhccCCCceEE----EEeCCC--CHHHHhhhcCCCCC
Q 023640 76 GE-PLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLA----VSLHAP--VQDVRCQIMPAARA 148 (279)
Q Consensus 76 GE-Pll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~~i~----iSld~~--~~~~~~~i~~~~~~ 148 (279)
-| +.+. +...++++.+++.| ..+.|.|-|...-...+++.+. ++-. +..+.. +......+.
T Consensus 73 ~~~~~l~-~ga~elv~~lk~~G-----~~v~iiSgg~~~lv~~ia~~lg-~d~~~an~l~~~dG~ltG~v~g~~~----- 140 (212)
T COG0560 73 EEFLRLT-PGAEELVAALKAAG-----AKVVIISGGFTFLVEPIAERLG-IDYVVANELEIDDGKLTGRVVGPIC----- 140 (212)
T ss_pred HhcCcCC-ccHHHHHHHHHHCC-----CEEEEEcCChHHHHHHHHHHhC-CchheeeEEEEeCCEEeceeeeeec-----
Confidence 44 6665 45679999999999 7999999986544556666552 3322 333321 222221111
Q ss_pred CCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCC
Q 023640 149 FPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 181 (279)
Q Consensus 149 ~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd 181 (279)
.-+.-.+.+++++++.|....-.+.+-.+.||
T Consensus 141 -~~~~K~~~l~~~~~~~g~~~~~~~a~gDs~nD 172 (212)
T COG0560 141 -DGEGKAKALRELAAELGIPLEETVAYGDSAND 172 (212)
T ss_pred -CcchHHHHHHHHHHHcCCCHHHeEEEcCchhh
Confidence 11233445557777777775555555544444
No 304
>PRK14706 glycogen branching enzyme; Provisional
Probab=24.33 E-value=2.2e+02 Score=28.34 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhCCcE-EEEEecCCC--CC-----CCCcCC-----CCHHHHHHHHHHHHhcCCeEEEe
Q 023640 184 QHAHQLGKLLETFQVV-VNLIPFNPI--GS-----VSQFRT-----SSDDKVSSFQKILRGSYNIRTTV 239 (279)
Q Consensus 184 ~~l~~l~~~l~~~~~~-i~l~~~~p~--~~-----~~~~~~-----~~~e~l~~~~~~l~~~~gi~v~v 239 (279)
+-..++++.|+++|+. |.++|.... .. ..++.. -+.++++.+.+.+. +.|+.|.+
T Consensus 168 ~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H-~~gi~Vil 235 (639)
T PRK14706 168 ELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLH-GLGIGVIL 235 (639)
T ss_pred HHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHH-HCCCEEEE
Confidence 3445677888999986 888886432 11 011211 25789999999999 88998643
No 305
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=24.20 E-value=2.4e+02 Score=27.41 Aligned_cols=56 Identities=9% Similarity=0.166 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhCCcE-EEEEecCCCC--CCCCc-----CC-----CCHHHHHHHHHHHHhcCCeEEEec
Q 023640 184 QHAHQLGKLLETFQVV-VNLIPFNPIG--SVSQF-----RT-----SSDDKVSSFQKILRGSYNIRTTVR 240 (279)
Q Consensus 184 ~~l~~l~~~l~~~~~~-i~l~~~~p~~--~~~~~-----~~-----~~~e~l~~~~~~l~~~~gi~v~vr 240 (279)
..+.+-++.|+++|+. |.++|..... ....| .. -+.++++++.+.+. +.|+.|.+-
T Consensus 111 ~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH-~~Gi~VilD 179 (542)
T TIGR02402 111 DAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAH-GLGLGVILD 179 (542)
T ss_pred HHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHHHHHH-HCCCEEEEE
Confidence 3444445677777776 7777764331 00111 11 25789999999999 889986443
No 306
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=24.17 E-value=5.5e+02 Score=23.43 Aligned_cols=178 Identities=10% Similarity=0.038 Sum_probs=87.9
Q ss_pred CccCCCHHHHHHHHHHHhccCCCceEEEecCCc----cccCHHHHHHHHHHHhCC-CCCCCCCeE-EEEcCCchhhhHHH
Q 023640 45 FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE----PLNNYAALVEAVRIMTGL-PFQVSPKRI-TVSTVGIVHAINKF 118 (279)
Q Consensus 45 ~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GE----Pll~~~~i~~~i~~~~~~-g~~~~~~~v-~i~TNG~~~~~~~l 118 (279)
.+..++.++-++.+..+.+ .|++.|-..-..- |.+. + -.++++.+++. + ..+ .+.. ...+++..
T Consensus 61 ~g~~~s~e~Ki~ia~~L~~-~GV~~IEvGs~vspk~vPqma-d-~~ev~~~i~~~~~-----~~~~~l~~--n~~die~A 130 (347)
T PLN02746 61 EKNIVPTSVKVELIQRLVS-SGLPVVEATSFVSPKWVPQLA-D-AKDVMAAVRNLEG-----ARFPVLTP--NLKGFEAA 130 (347)
T ss_pred CCCCCCHHHHHHHHHHHHH-cCCCEEEECCCcCcccccccc-c-HHHHHHHHHhccC-----CceeEEcC--CHHHHHHH
Confidence 3456888888887777665 3777665432112 3343 2 23455555543 2 122 2222 22334444
Q ss_pred hccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEE--EEe-C--CCCCcHHHHHHHHHHH
Q 023640 119 HSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY--IML-D--GVNDEEQHAHQLGKLL 193 (279)
Q Consensus 119 ~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~--vv~-~--g~nd~~~~l~~l~~~l 193 (279)
.+.+ ...+.+.+ +.++.+.+.-.+......++.+.+.+ +++++.|..+...+ .+- + +- -+.+.+.++++.+
T Consensus 131 ~~~g-~~~v~i~~-s~Sd~h~~~n~~~t~~e~l~~~~~~v-~~Ak~~Gl~v~~~is~~fg~p~~~r-~~~~~l~~~~~~~ 206 (347)
T PLN02746 131 IAAG-AKEVAVFA-SASESFSKSNINCSIEESLVRYREVA-LAAKKHSIPVRGYVSCVVGCPIEGP-VPPSKVAYVAKEL 206 (347)
T ss_pred HHcC-cCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHH-HHHHHcCCeEEEEEEeeecCCccCC-CCHHHHHHHHHHH
Confidence 4443 22344555 23343333222111122233333455 55666777665333 221 1 11 2467788888888
Q ss_pred hhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCC---eEEEeccccc
Q 023640 194 ETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN---IRTTVRKQMG 244 (279)
Q Consensus 194 ~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g---i~v~vr~~~g 244 (279)
.+.|+. +.+- . ..-..++.++.++.+.+++.++ +.+....+.|
T Consensus 207 ~~~Gad~I~l~--D------T~G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~G 253 (347)
T PLN02746 207 YDMGCYEISLG--D------TIGVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYG 253 (347)
T ss_pred HHcCCCEEEec--C------CcCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence 888876 5442 1 1122457777777777763444 2334444443
No 307
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=24.16 E-value=3.3e+02 Score=24.98 Aligned_cols=61 Identities=11% Similarity=0.135 Sum_probs=43.1
Q ss_pred eCCCCCcHHHHHHHHHHHhhCCcEEEE-EecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEE
Q 023640 176 LDGVNDEEQHAHQLGKLLETFQVVVNL-IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT 237 (279)
Q Consensus 176 ~~g~nd~~~~l~~l~~~l~~~~~~i~l-~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v 237 (279)
-|..-++.+.+.++|+.+++.++.+.. -.|.|...-..|..+..+.+..+.+..+ ++|+.+
T Consensus 124 Gpc~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~-~~Gl~~ 185 (360)
T PRK12595 124 GPCSVESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVAD-EYGLAV 185 (360)
T ss_pred ecccccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHH-HcCCCE
Confidence 444456788999999999998876322 2344432223467778899999999988 888864
No 308
>PF09153 DUF1938: Domain of unknown function (DUF1938); InterPro: IPR015236 This domain, which is predominantly found in the archaeal protein O6-alkylguanine-DNA alkyltransferase, adopts a secondary structure consisting of a three stranded antiparallel beta-sheet and three alpha helices. The exact function has not, as yet, been defined, though it has been postulated that this domain may confer thermostability to the protein []. ; GO: 0005737 cytoplasm; PDB: 1MGT_A.
Probab=24.09 E-value=33 Score=24.30 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=24.5
Q ss_pred CCceEEEecCCccccCHHHHHHHHHHHhCCC
Q 023640 66 NIRNVVFMGMGEPLNNYAALVEAVRIMTGLP 96 (279)
Q Consensus 66 ~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g 96 (279)
++.+|+|+=.|+-++. +++..++..++++|
T Consensus 23 kIqGItfslDg~efl~-eri~~L~~~L~kRg 52 (86)
T PF09153_consen 23 KIQGITFSLDGEEFLR-ERISRLIEFLKKRG 52 (86)
T ss_dssp SEEEEEEESSHHHHHH--HHHHHHHHHHHTT
T ss_pred ceeeEEEEeccHHHHH-HHHHHHHHHHHhcC
Confidence 5788999987888884 78989999999887
No 309
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=23.95 E-value=1.2e+02 Score=20.39 Aligned_cols=37 Identities=24% Similarity=0.411 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHH
Q 023640 52 GEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVR 90 (279)
Q Consensus 52 ~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~ 90 (279)
+++.+.+.+......+-. .|.+ |+++-.++.+.++.+
T Consensus 39 ~~~~~~~~~~~g~~~~P~-v~~~-g~~igg~~~~~~~~~ 75 (82)
T cd03419 39 SEIQDYLQELTGQRTVPN-VFIG-GKFIGGCDDLMALHK 75 (82)
T ss_pred HHHHHHHHHHhCCCCCCe-EEEC-CEEEcCHHHHHHHHH
Confidence 334444444332223333 4777 888777665544443
No 310
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=23.93 E-value=5e+02 Score=22.78 Aligned_cols=86 Identities=10% Similarity=0.098 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCC-cE-EEEEecCCCCCC-CCcCCCCHHHHHHHH
Q 023640 150 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ-VV-VNLIPFNPIGSV-SQFRTSSDDKVSSFQ 226 (279)
Q Consensus 150 ~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~-~~-i~l~~~~p~~~~-~~~~~~~~e~l~~~~ 226 (279)
..+..++.++...++.+.++.+++. + .+.+++.+.++.+++.| +. +.+.-.-|.... ...-..+.+.+.++.
T Consensus 75 g~~~~~~~~~~~~~~~~~p~i~si~---g--~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv 149 (301)
T PRK07259 75 GVDAFIEEELPWLEEFDTPIIANVA---G--STEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVV 149 (301)
T ss_pred CHHHHHHHHHHHHhccCCcEEEEec---c--CCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHH
Confidence 3556666665544444555555542 2 25678888888888876 54 555322332111 111112456666666
Q ss_pred HHHHhcCCeEEEec
Q 023640 227 KILRGSYNIRTTVR 240 (279)
Q Consensus 227 ~~l~~~~gi~v~vr 240 (279)
+.+++...+++.++
T Consensus 150 ~~vr~~~~~pv~vK 163 (301)
T PRK07259 150 KAVKEVVKVPVIVK 163 (301)
T ss_pred HHHHHhcCCCEEEE
Confidence 66663334454444
No 311
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.
Probab=23.87 E-value=2.1e+02 Score=23.93 Aligned_cols=54 Identities=20% Similarity=0.143 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCc
Q 023640 50 SSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGI 111 (279)
Q Consensus 50 ~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~ 111 (279)
..+++.+.+.+.... +-..+.++. |+|+++ .....+++.+++.+ ..+.+...-+
T Consensus 62 ~~~~~~~~i~~~~~~-g~~V~~l~~-GDP~~~-~~~~~l~~~~~~~~-----~~v~viPGiS 115 (236)
T TIGR01469 62 KQEEINRLLVELARE-GKKVVRLKG-GDPFVF-GRGGEEAEALAEAG-----IPFEVVPGVT 115 (236)
T ss_pred CHHHHHHHHHHHHHC-CCeEEEEeC-cCcccc-cCHHHHHHHHHHCC-----CCEEEECCcc
Confidence 345566655443322 334445677 999995 55667777777666 4677665443
No 312
>PLN02389 biotin synthase
Probab=23.86 E-value=5.8e+02 Score=23.55 Aligned_cols=28 Identities=14% Similarity=0.126 Sum_probs=17.0
Q ss_pred cccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 023640 78 PLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 109 (279)
Q Consensus 78 Pll~~~~i~~~i~~~~~~g~~~~~~~v~i~TN 109 (279)
|++.++.+.+.++.+.+.|+ ..+++.|.
T Consensus 114 ~~Ls~EeIl~~a~~~~~~G~----~~~~ivts 141 (379)
T PLN02389 114 KLMSKDDVLEAAKRAKEAGS----TRFCMGAA 141 (379)
T ss_pred ccCCHHHHHHHHHHHHHcCC----CEEEEEec
Confidence 35666777777776666653 45566554
No 313
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=23.78 E-value=5e+02 Score=22.74 Aligned_cols=49 Identities=12% Similarity=0.102 Sum_probs=33.0
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecC-Cc-cccCHHHHHHHHHHHhCC
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL 95 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~~~i~~~~~~ 95 (279)
..++.+.+.+.+.......|++.|.+.|. || +.|..++-.++++.+.+.
T Consensus 19 g~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~ 69 (293)
T PRK04147 19 GQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEE 69 (293)
T ss_pred CCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 45777777777776654137888877664 88 777766666676655543
No 314
>COG4868 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.66 E-value=5.6e+02 Score=23.33 Aligned_cols=74 Identities=11% Similarity=0.186 Sum_probs=44.4
Q ss_pred CceEEEEeCCCCHHHHhhhcCCCCCCCH-HHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEE
Q 023640 124 GLNLAVSLHAPVQDVRCQIMPAARAFPL-EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 202 (279)
Q Consensus 124 ~~~i~iSld~~~~~~~~~i~~~~~~~~~-~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l 202 (279)
.+.+.|.+.+.+-+..+ .++. -+.++ +++++.+..| ++. .+.+..+|+..++|. .....+...+...|.++.+
T Consensus 65 qvEiviainA~diE~~K-~RgD-lgIsYd~dV~RLID~f-rel--~~~v~sVViTqyed~-p~a~aF~~rLEr~Gikvy~ 138 (493)
T COG4868 65 QVEIVIAINAGDIERSK-ARGD-LGISYDQDVFRLIDKF-REL--DIKVGSVVITQYEDQ-PAADAFRTRLERNGIKVYL 138 (493)
T ss_pred heEEEEEEeccchhhhh-hccc-cCcchhHHHHHHHHHH-Hhc--CeeeeeEEEEecCCC-hhHHHHHHHHHhcCcceEE
Confidence 35677788776544332 2221 12333 4566766444 333 466677777777776 4577788888888876554
Q ss_pred E
Q 023640 203 I 203 (279)
Q Consensus 203 ~ 203 (279)
.
T Consensus 139 H 139 (493)
T COG4868 139 H 139 (493)
T ss_pred e
Confidence 3
No 315
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=23.25 E-value=5.2e+02 Score=22.74 Aligned_cols=17 Identities=18% Similarity=-0.005 Sum_probs=12.3
Q ss_pred cCHHHHHHHHHHHhCCC
Q 023640 80 NNYAALVEAVRIMTGLP 96 (279)
Q Consensus 80 l~~~~i~~~i~~~~~~g 96 (279)
++++.+.++++.+.+.|
T Consensus 18 iD~~~l~~lv~~~~~~G 34 (294)
T TIGR02313 18 IDEEALRELIEFQIEGG 34 (294)
T ss_pred cCHHHHHHHHHHHHHcC
Confidence 55677777777777766
No 316
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=23.03 E-value=2.2e+02 Score=23.79 Aligned_cols=43 Identities=23% Similarity=0.388 Sum_probs=29.2
Q ss_pred HHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE--EEEEec
Q 023640 156 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPF 205 (279)
Q Consensus 156 ~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~--i~l~~~ 205 (279)
..++.++++.+..+.+-++ ..+..++.++.|-+.|++ +++-|.
T Consensus 136 d~le~~v~~~dv~iaiLtV-------Pa~~AQ~vad~Lv~aGVkGIlNFtPv 180 (211)
T COG2344 136 DDLEKFVKKNDVEIAILTV-------PAEHAQEVADRLVKAGVKGILNFTPV 180 (211)
T ss_pred HHHHHHHHhcCccEEEEEc-------cHHHHHHHHHHHHHcCCceEEeccce
Confidence 3455666677776665443 346789999999998887 555443
No 317
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=22.74 E-value=3.9e+02 Score=24.06 Aligned_cols=63 Identities=8% Similarity=0.094 Sum_probs=42.0
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHHHhhCCc-EEEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeE
Q 023640 169 IFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIR 236 (279)
Q Consensus 169 v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~-~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~ 236 (279)
+.+++-+-||-.-+.+.+.++++...+.|. .+++..-.. -.+...+.++++++.+.|+ +.|+.
T Consensus 30 ~~vRv~~ppgg~l~~e~Lr~i~diAekyG~G~i~iT~rqg----~ei~~i~~e~~~~v~~~L~-~iG~~ 93 (317)
T COG2221 30 YTVRVRTPPGGFLSAETLRKIADIAEKYGDGLIHITSRQG----LEIPGISPEDADDVVEELR-EIGLP 93 (317)
T ss_pred EEEEEecCCCCccCHHHHHHHHHHHHHhCCCeEEEEecCc----eEeccCCHHHHHHHHHHHH-HcCCC
Confidence 566666566445567888888888888876 466643222 2334467888888888888 66654
No 318
>PRK10637 cysG siroheme synthase; Provisional
Probab=22.70 E-value=1.9e+02 Score=27.32 Aligned_cols=52 Identities=19% Similarity=0.196 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 023640 50 SSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 109 (279)
Q Consensus 50 ~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TN 109 (279)
+.+++.+.+.+.... |-+.+.++. |+|++. .....+++.+.+.| ..+.+...
T Consensus 278 ~~~~~~~~i~~~~~~-G~~Vv~L~s-GDP~~y-g~~~~l~~~l~~~g-----i~vevVPG 329 (457)
T PRK10637 278 PQEEINQILLREAQK-GKRVVRLKG-GDPFIF-GRGGEELETLCNAG-----IPFSVVPG 329 (457)
T ss_pred CHHHHHHHHHHHHhC-CCEEEEEeC-CCcccc-ccHHHHHHHHHhCC-----CCEEEECC
Confidence 346666666554332 445677778 999995 66667777777666 56666654
No 319
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=22.67 E-value=74 Score=19.57 Aligned_cols=8 Identities=38% Similarity=1.136 Sum_probs=6.4
Q ss_pred CccccCCC
Q 023640 35 CNFCATGT 42 (279)
Q Consensus 35 C~yC~~~~ 42 (279)
|+||....
T Consensus 1 CP~C~~kk 8 (43)
T PF03470_consen 1 CPFCPGKK 8 (43)
T ss_pred CCCCCCCC
Confidence 99998753
No 320
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=22.59 E-value=2.8e+02 Score=26.47 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEE
Q 023640 153 KLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 202 (279)
Q Consensus 153 ~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l 202 (279)
.+.+-+ +.++++|.++.+..--. ..|+++++..+-+++.+.|+.+.+
T Consensus 357 NL~~Hi-~Nikkfgvp~VVAIN~F--~tDt~~Ei~~i~~~~~~~gv~~~l 403 (554)
T COG2759 357 NLLKHI-ENIKKFGVPVVVAINKF--PTDTEAEIAAIEKLCEEHGVEVAL 403 (554)
T ss_pred HHHHHH-HHHHHcCCCeEEEeccC--CCCCHHHHHHHHHHHHHcCCceee
Confidence 333334 23456788877655444 478999999999999998876544
No 321
>PF06134 RhaA: L-rhamnose isomerase (RhaA); InterPro: IPR009308 This family consists of several bacterial L-rhamnose isomerase proteins (5.3.1.14 from EC). This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including Escherichia coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. ; GO: 0008740 L-rhamnose isomerase activity, 0030145 manganese ion binding, 0019299 rhamnose metabolic process; PDB: 1DE5_A 1D8W_D 1DE6_B 3P14_B 3UU0_B.
Probab=22.58 E-value=2e+02 Score=26.66 Aligned_cols=130 Identities=12% Similarity=0.115 Sum_probs=60.6
Q ss_pred ccCCCHHHHHHHHHHHhc-cCCCceEEE------ecCCcccc----CHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhh
Q 023640 46 KSNLSSGEIVEQLVHASR-LSNIRNVVF------MGMGEPLN----NYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHA 114 (279)
Q Consensus 46 ~~~~~~~ei~~~i~~~~~-~~~~~~I~f------sG~GEPll----~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~ 114 (279)
++..+++|+...+..+.. -+|...+++ ++ ||..= -++++...++.++++| +.+-+.+|-+.
T Consensus 65 G~Ar~~~elr~Dl~~a~slipG~~rlnLHa~Y~~~~-g~~vdrd~iep~hF~~Wv~wAke~g-----lgLdfNpt~Fs-- 136 (417)
T PF06134_consen 65 GKARTPDELRADLEKALSLIPGKHRLNLHAIYADTD-GEKVDRDEIEPEHFEKWVDWAKENG-----LGLDFNPTFFS-- 136 (417)
T ss_dssp ----SHHHHHHHHHHHHTTSSS-EEEEEEGGG---T-TS---GGG--GGGGHHHHHHHHHCT------EEEEE---SS--
T ss_pred CCCCCHHHHHHHHHHHHhhCCCCcccchhHHHHHhc-CCcccccccChHHHHHHHHHHHHcC-----CCcccCccccC--
Confidence 467889999998887643 245555655 34 66532 2566788999999998 34444443322
Q ss_pred hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHH----HHHHH
Q 023640 115 INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQH----AHQLG 190 (279)
Q Consensus 115 ~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~----l~~l~ 190 (279)
.+. . .-.++|-++++++++.+... -..-.+-.+.+-++.|..-.+++=+-.|.+|.+.+ =+.|.
T Consensus 137 hp~-~------~dg~TLs~pD~~IR~fwI~H-----~~~cr~I~~~~G~~lg~~cv~niWipDG~kd~p~Dr~~~R~RL~ 204 (417)
T PF06134_consen 137 HPK-A------KDGLTLSHPDEEIRDFWIEH-----GKACRRIAEYFGSELGSPCVMNIWIPDGTKDPPQDRLRPRQRLK 204 (417)
T ss_dssp SGG-G------TTS-STT-SSHHHHHHHHHH-----HHHHHHHHHHHHHHHTS-EEEEEE---EESS--S-SHHHHHHHH
T ss_pred Ccc-c------cCCCcccCCCHHHHHHHHHH-----HHHHHHHHHHHHHhhCCCcceeeecCCCCCCCCcccchHHHHHH
Confidence 111 1 11246778889988865311 11222222233344555555555544455554311 23455
Q ss_pred HHHhh
Q 023640 191 KLLET 195 (279)
Q Consensus 191 ~~l~~ 195 (279)
+-|.+
T Consensus 205 eSLde 209 (417)
T PF06134_consen 205 ESLDE 209 (417)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 322
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=22.47 E-value=7.2e+02 Score=24.12 Aligned_cols=168 Identities=10% Similarity=0.028 Sum_probs=87.1
Q ss_pred CccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchh--------hhH
Q 023640 45 FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH--------AIN 116 (279)
Q Consensus 45 ~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~--------~~~ 116 (279)
.+..+++++-++.+..+.+ .|++.|-. |=|..++..+ +.++.+.+.++ ....+....-.... .++
T Consensus 16 ~g~~~s~eeKl~Ia~~L~~-~GVd~IE~---G~p~~s~~d~-~~v~~i~~~~~--~~~~i~~~~r~~r~~~~~~~d~~~e 88 (526)
T TIGR00977 16 EGVSFSLEDKIRIAERLDD-LGIHYIEG---GWPGANPKDV-QFFWQLKEMNF--KNAKIVAFCSTRRPHKKVEEDKMLQ 88 (526)
T ss_pred CCCCCCHHHHHHHHHHHHH-cCCCEEEE---eCCCCChHHH-HHHHHHHHhCC--CCcEEEEEeeecCCCCCCchHHHHH
Confidence 3456889988888877665 47776655 3466775553 56666654432 11223222111111 122
Q ss_pred HHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEE-EeCCCCCcHHHHHHHHHHHhh
Q 023640 117 KFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYI-MLDGVNDEEQHAHQLGKLLET 195 (279)
Q Consensus 117 ~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~v-v~~g~nd~~~~l~~l~~~l~~ 195 (279)
.+.+.. ...+.+.+.+.+......+ +......++.+.+.+ +++++.+..+.+... +..+.-.+.+.+.++++.+.+
T Consensus 89 a~~~~~-~~~v~i~~~~Sd~h~~~~l-~~s~ee~l~~~~~~v-~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~ 165 (526)
T TIGR00977 89 ALIKAE-TPVVTIFGKSWDLHVLEAL-QTTLEENLAMIYDTV-AYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQ 165 (526)
T ss_pred HHhcCC-CCEEEEEeCCCHHHHHHHh-CCCHHHHHHHHHHHH-HHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHh
Confidence 333322 1224455544333333333 111223344445555 566777776654322 113333467888888888888
Q ss_pred CCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHH
Q 023640 196 FQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 230 (279)
Q Consensus 196 ~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~ 230 (279)
.|+. +.+. ... ....++++.++.+.+.
T Consensus 166 aGad~i~i~--DTv------G~~~P~~v~~li~~l~ 193 (526)
T TIGR00977 166 AGADWLVLC--DTN------GGTLPHEISEITTKVK 193 (526)
T ss_pred CCCCeEEEe--cCC------CCcCHHHHHHHHHHHH
Confidence 8876 5543 221 2346677777777665
No 323
>PRK01060 endonuclease IV; Provisional
Probab=22.41 E-value=2.6e+02 Score=24.01 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=13.8
Q ss_pred CcHHHHHHHHHHHhhCCcE
Q 023640 181 DEEQHAHQLGKLLETFQVV 199 (279)
Q Consensus 181 d~~~~l~~l~~~l~~~~~~ 199 (279)
.+++++.++-+.+++.|+.
T Consensus 44 ~~~~~~~~lk~~~~~~gl~ 62 (281)
T PRK01060 44 LEELNIEAFKAACEKYGIS 62 (281)
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 3566778888888877765
No 324
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.20 E-value=67 Score=20.47 Aligned_cols=56 Identities=9% Similarity=0.144 Sum_probs=31.1
Q ss_pred CcHHHHHHHHHHHhhCCcEE-EEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEE
Q 023640 181 DEEQHAHQLGKLLETFQVVV-NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT 237 (279)
Q Consensus 181 d~~~~l~~l~~~l~~~~~~i-~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v 237 (279)
|.+..+.++.+.+.+.+.++ .+..+.........-....+..+.+.+.++ +.|+.+
T Consensus 8 d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~-~~G~~v 64 (65)
T cd04882 8 DKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQ-ERGVEL 64 (65)
T ss_pred CCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHH-HCCceE
Confidence 46778899999999888763 233322210111110111222667778888 677654
No 325
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=22.09 E-value=3.2e+02 Score=19.96 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhC---CcEEEEE
Q 023640 151 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLI 203 (279)
Q Consensus 151 ~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~---~~~i~l~ 203 (279)
++.+++.++.++++.+.++.+++-+.==...+...+-.|.+.|.+. |..|.+.
T Consensus 27 y~Pi~~wl~~Yl~~~~~~i~~~~~L~YfNTSSsk~l~~i~~~Le~~~~~g~~V~v~ 82 (99)
T PF09345_consen 27 YQPILDWLEAYLAEPNKPITFNFKLSYFNTSSSKALMDIFDLLEDAAQKGGKVTVN 82 (99)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEEEEEEecHhHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 5788899988888766666655544322234566677777777553 4445544
No 326
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=22.03 E-value=2.7e+02 Score=20.91 Aligned_cols=45 Identities=22% Similarity=0.197 Sum_probs=23.9
Q ss_pred CCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE--EEEEecCCCCC
Q 023640 166 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGS 210 (279)
Q Consensus 166 ~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~--i~l~~~~p~~~ 210 (279)
|..+.+-..+.+..||+.=++--+++.++..+.+ .-++||.|..+
T Consensus 47 g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~i~~ViPYl~YaR 93 (116)
T PF13793_consen 47 GKDVFIIQSTSPPVNDNLMELLLLIDALRRAGAKRITLVIPYLPYAR 93 (116)
T ss_dssp TSEEEEE---SSSHHHHHHHHHHHHHHHHHTTBSEEEEEESS-TTTT
T ss_pred CCceEEEEecCCchhHHHHHHHHHHHHHHHcCCcEEEEeccchhhhh
Confidence 3444443333444445555556666777777764 44579998753
No 327
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=22.01 E-value=7.3e+02 Score=24.04 Aligned_cols=175 Identities=10% Similarity=0.025 Sum_probs=86.9
Q ss_pred ccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC----Cchh----hhHH
Q 023640 46 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV----GIVH----AINK 117 (279)
Q Consensus 46 ~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TN----G~~~----~~~~ 117 (279)
...++.++.++.+..+.+ .|++.|-+. =|..+++. .++++.+.+.++ ....+...+- +... .++.
T Consensus 21 g~~~s~e~Kl~ia~~L~~-~Gvd~IEvG---~p~as~~d-~~~~~~i~~~~l--~~~~i~~~~~~~~~~i~~~~d~~~e~ 93 (524)
T PRK12344 21 GISFSVEDKLRIARKLDE-LGVDYIEGG---WPGSNPKD-TEFFKRAKELKL--KHAKLAAFGSTRRAGVSAEEDPNLQA 93 (524)
T ss_pred CCCCCHHHHHHHHHHHHH-cCCCEEEEc---CCcCChhH-HHHHHHHHHhCC--CCcEEEEEeeccccCCCcccHHHHHH
Confidence 457889988888887665 478777662 24555544 466776665331 1123333221 1110 1222
Q ss_pred HhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEe-CCCCCcHHHHHHHHHHHhhC
Q 023640 118 FHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIML-DGVNDEEQHAHQLGKLLETF 196 (279)
Q Consensus 118 l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~-~g~nd~~~~l~~l~~~l~~~ 196 (279)
+.+.. ...+.+.+-+.+......+ +......++.+.+.+ +++++.|..+.+...-. .+.-.+.+.+.++++.+.+.
T Consensus 94 ~~~~g-~~~i~i~~~~Sd~h~~~~l-~~s~~e~l~~~~~~v-~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~ 170 (524)
T PRK12344 94 LLDAG-TPVVTIFGKSWDLHVTEAL-RTTLEENLAMIRDSV-AYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEA 170 (524)
T ss_pred HHhCC-CCEEEEEECCCHHHHHHHc-CCCHHHHHHHHHHHH-HHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhC
Confidence 33322 1224444433222222222 211223345555555 55666777666543211 12223466678888888887
Q ss_pred CcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEE
Q 023640 197 QVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 238 (279)
Q Consensus 197 ~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~ 238 (279)
|+. +.+- . ......++++.++.+.+++..++.+.
T Consensus 171 Gad~i~l~---D-----TvG~~~P~~v~~li~~l~~~~~v~i~ 205 (524)
T PRK12344 171 GADWVVLC---D-----TNGGTLPHEVAEIVAEVRAAPGVPLG 205 (524)
T ss_pred CCCeEEEc---c-----CCCCcCHHHHHHHHHHHHHhcCCeEE
Confidence 775 4431 1 12235677777777777633344443
No 328
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=21.95 E-value=5.7e+02 Score=23.78 Aligned_cols=30 Identities=20% Similarity=0.434 Sum_probs=20.4
Q ss_pred EeCCCCCcHHHHHHHHHHHhhCCcEEEEEe
Q 023640 175 MLDGVNDEEQHAHQLGKLLETFQVVVNLIP 204 (279)
Q Consensus 175 v~~g~nd~~~~l~~l~~~l~~~~~~i~l~~ 204 (279)
++.+.+....++.++.++|+++|..++.++
T Consensus 160 lig~~~~~~~d~~el~~lL~~~Gl~v~~~~ 189 (428)
T cd01965 160 LLPGFPLTPGDVREIKRILEAFGLEPIILP 189 (428)
T ss_pred EECCCCCCccCHHHHHHHHHHcCCCEEEec
Confidence 344444344468888899999998866653
No 329
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=21.90 E-value=2.7e+02 Score=23.81 Aligned_cols=28 Identities=11% Similarity=0.101 Sum_probs=20.7
Q ss_pred CCceEEEecCCccccCHHHHHHHHHHHhCC
Q 023640 66 NIRNVVFMGMGEPLNNYAALVEAVRIMTGL 95 (279)
Q Consensus 66 ~~~~I~fsG~GEPll~~~~i~~~i~~~~~~ 95 (279)
|-+.+.++. |+|++ |.....+++.+++.
T Consensus 92 g~~v~~l~~-GDp~~-ys~~~~l~~~l~~~ 119 (238)
T PRK05948 92 GEDVAFACE-GDVSF-YSTFTYLAQTLQEL 119 (238)
T ss_pred CCeEEEEeC-CChHH-HHHHHHHHHHHHhc
Confidence 445566777 99999 57777888877764
No 330
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=21.67 E-value=1.3e+02 Score=24.08 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhccC
Q 023640 83 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDL 122 (279)
Q Consensus 83 ~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~~~ 122 (279)
+.+.++++.+++.| ..+.|.|||.......+++.+
T Consensus 83 ~g~~e~l~~l~~~g-----~~~~IvS~~~~~~~~~~l~~~ 117 (201)
T TIGR01491 83 DYAEELVRWLKEKG-----LKTAIVSGGIMCLAKKVAEKL 117 (201)
T ss_pred ccHHHHHHHHHHCC-----CEEEEEeCCcHHHHHHHHHHh
Confidence 55789999999888 799999999755444554443
No 331
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=21.39 E-value=73 Score=24.70 Aligned_cols=25 Identities=16% Similarity=0.044 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCc
Q 023640 82 YAALVEAVRIMTGLPFQVSPKRITVSTVGI 111 (279)
Q Consensus 82 ~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~ 111 (279)
++.+.++++.+++.| ..+.|.||+.
T Consensus 29 ~~g~~~~l~~Lk~~g-----~~~~I~Sn~~ 53 (147)
T TIGR01656 29 RPGAVPALLTLRAAG-----YTVVVVTNQS 53 (147)
T ss_pred cCChHHHHHHHHHCC-----CEEEEEeCCC
Confidence 355789999999998 7999999975
No 332
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=21.39 E-value=3.4e+02 Score=23.18 Aligned_cols=45 Identities=22% Similarity=0.415 Sum_probs=34.0
Q ss_pred CCCcHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHH
Q 023640 179 VNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 230 (279)
Q Consensus 179 ~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~ 230 (279)
+.+++.++.++++.+++.+|.+.++-|.-.. ...+.+..|...+.
T Consensus 118 i~e~ekeLv~~akrlkk~~Vaidii~FGE~~-------~~~e~l~~fida~N 162 (259)
T KOG2884|consen 118 IEESEKELVKLAKRLKKNKVAIDIINFGEAE-------NNTEKLFEFIDALN 162 (259)
T ss_pred chhhHHHHHHHHHHHHhcCeeEEEEEecccc-------ccHHHHHHHHHHhc
Confidence 5778889999999999998888887665431 12677788888777
No 333
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=21.38 E-value=6.5e+02 Score=23.18 Aligned_cols=66 Identities=17% Similarity=0.277 Sum_probs=41.0
Q ss_pred EEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEE-eCCCCCcHHHHHHHHHHHhhCC
Q 023640 127 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQ 197 (279)
Q Consensus 127 i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv-~~g~nd~~~~l~~l~~~l~~~~ 197 (279)
+-|.+.+.-++..+.. +++.+...+.+.. .+.+++|-++..+++- +|++ .-+.+++++.+++..-.
T Consensus 250 lEiGVQS~YEDVARDT---NRGHTV~aVce~F-~laKDaG~KvV~HMMPdLPNV-g~eRDieqF~E~FenP~ 316 (554)
T KOG2535|consen 250 LEIGVQSVYEDVARDT---NRGHTVKAVCESF-HLAKDAGFKVVAHMMPDLPNV-GMERDIEQFKEYFENPA 316 (554)
T ss_pred EEeccchhHHHhhhcc---cCCccHHHHHHHh-hhhhccCceeehhhCCCCCCC-chhhhHHHHHHHhcCcC
Confidence 4444444444443332 3446788888888 7788888777655432 3443 34678888988887643
No 334
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=21.33 E-value=6.1e+02 Score=22.89 Aligned_cols=154 Identities=10% Similarity=0.138 Sum_probs=82.2
Q ss_pred ccCCCHHHHHHHHHHHhccCCCceEEEec---C-------CccccC-HHHHHHHHHHHhCCCCCCCCCeEE-EEcCC--c
Q 023640 46 KSNLSSGEIVEQLVHASRLSNIRNVVFMG---M-------GEPLNN-YAALVEAVRIMTGLPFQVSPKRIT-VSTVG--I 111 (279)
Q Consensus 46 ~~~~~~~ei~~~i~~~~~~~~~~~I~fsG---~-------GEPll~-~~~i~~~i~~~~~~g~~~~~~~v~-i~TNG--~ 111 (279)
...++.++..+.+..+.+ .|++.|-++- . |-|... .+.+.++.+.++. ..+. +..-| .
T Consensus 18 ~~~f~~~~~~~ia~~Ld~-aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~-------~~~~~ll~pg~~~ 89 (333)
T TIGR03217 18 RHQFTIEQVRAIAAALDE-AGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKR-------AKVAVLLLPGIGT 89 (333)
T ss_pred CCcCCHHHHHHHHHHHHH-cCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCC-------CEEEEEeccCccC
Confidence 346788888887776654 3777776651 0 333332 2333333333322 2333 33222 3
Q ss_pred hhhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHH
Q 023640 112 VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 191 (279)
Q Consensus 112 ~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~ 191 (279)
..+++...+.+ ...+.+..+.. ..+.+.+.+ +++++.|..+.+..+... .-+++.+.++++
T Consensus 90 ~~dl~~a~~~g-vd~iri~~~~~---------------e~d~~~~~i-~~ak~~G~~v~~~l~~s~--~~~~e~l~~~a~ 150 (333)
T TIGR03217 90 VHDLKAAYDAG-ARTVRVATHCT---------------EADVSEQHI-GMARELGMDTVGFLMMSH--MTPPEKLAEQAK 150 (333)
T ss_pred HHHHHHHHHCC-CCEEEEEeccc---------------hHHHHHHHH-HHHHHcCCeEEEEEEccc--CCCHHHHHHHHH
Confidence 33333333332 22244544311 123445566 567777877776655443 336788999999
Q ss_pred HHhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCC
Q 023640 192 LLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN 234 (279)
Q Consensus 192 ~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g 234 (279)
.+.+.|+. +.+. . ......++++.++...+++..+
T Consensus 151 ~~~~~Ga~~i~i~--D------T~G~~~P~~v~~~v~~l~~~l~ 186 (333)
T TIGR03217 151 LMESYGADCVYIV--D------SAGAMLPDDVRDRVRALKAVLK 186 (333)
T ss_pred HHHhcCCCEEEEc--c------CCCCCCHHHHHHHHHHHHHhCC
Confidence 99888876 4442 1 1223567777777777764444
No 335
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=21.24 E-value=5.7e+02 Score=22.51 Aligned_cols=81 Identities=14% Similarity=0.048 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHh
Q 023640 153 KLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG 231 (279)
Q Consensus 153 ~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~ 231 (279)
.+++++.+..++.|+++.+.+.+.+.. ..+.+.+..+.+.+.+.. +.-+.+.+. .. ..+.+++..+.+.++
T Consensus 112 ~~~~ai~~~~~~~gi~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~vvg~~l~~~----~~-~~~~~~~~~~~~~A~- 183 (325)
T cd01320 112 AVLRGLDEAEAEFGIKARLILCGLRHL--SPESAQETLELALKYRDKGVVGFDLAGD----EV-GFPPEKFVRAFQRAR- 183 (325)
T ss_pred HHHHHHHHHHHhcCCeEEEEEEecCCC--CHHHHHHHHHHHHhccCCCEEEeecCCC----CC-CCCHHHHHHHHHHHH-
Confidence 345566565566787777766555532 345667777766554322 211222211 11 136788888888888
Q ss_pred cCCeEEEecc
Q 023640 232 SYNIRTTVRK 241 (279)
Q Consensus 232 ~~gi~v~vr~ 241 (279)
.+|+.+.+..
T Consensus 184 ~~g~~v~~H~ 193 (325)
T cd01320 184 EAGLRLTAHA 193 (325)
T ss_pred HCCCceEEeC
Confidence 7788766654
No 336
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=21.17 E-value=1.2e+02 Score=25.03 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhcc
Q 023640 83 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSD 121 (279)
Q Consensus 83 ~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~~ 121 (279)
+.+.++++.+++.| ..+.|.|||.......+.+.
T Consensus 88 ~g~~~~l~~l~~~g-----~~~~IvS~~~~~~~~~~l~~ 121 (219)
T TIGR00338 88 EGAEELVKTLKEKG-----YKVAVISGGFDLFAEHVKDK 121 (219)
T ss_pred CCHHHHHHHHHHCC-----CEEEEECCCcHHHHHHHHHH
Confidence 45778999999888 78999999975544444443
No 337
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=21.10 E-value=2.9e+02 Score=22.50 Aligned_cols=49 Identities=18% Similarity=0.178 Sum_probs=33.6
Q ss_pred HHHHhccCCCceEEEecCCccccC-HHHHHHHHHHHhCCCCCCCCCeEEEEcCCch
Q 023640 58 LVHASRLSNIRNVVFMGMGEPLNN-YAALVEAVRIMTGLPFQVSPKRITVSTVGIV 112 (279)
Q Consensus 58 i~~~~~~~~~~~I~fsG~GEPll~-~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~ 112 (279)
++.+++..|.+.|..|. |-|+-. -+.+.++++.+..-. ..+-+.-+|..
T Consensus 16 vE~aa~~iGgRCIS~S~-GNPT~lsG~elV~lIk~a~~DP-----V~VMfDD~G~~ 65 (180)
T PF14097_consen 16 VEIAAKNIGGRCISQSA-GNPTPLSGEELVELIKQAPHDP-----VLVMFDDKGFI 65 (180)
T ss_pred HHHHHHHhCcEEEeccC-CCCCcCCHHHHHHHHHhCCCCC-----EEEEEeCCCCC
Confidence 33344445678999999 999986 455666666655443 67888889864
No 338
>PTZ00445 p36-lilke protein; Provisional
Probab=21.05 E-value=4.3e+02 Score=22.46 Aligned_cols=59 Identities=19% Similarity=0.169 Sum_probs=36.5
Q ss_pred cHHHHHHHHHHHhhCCcEEEEEecCCCC----CCCCcCCC---------CHHHHHHHHHHHHhcCCeEEEecc
Q 023640 182 EEQHAHQLGKLLETFQVVVNLIPFNPIG----SVSQFRTS---------SDDKVSSFQKILRGSYNIRTTVRK 241 (279)
Q Consensus 182 ~~~~l~~l~~~l~~~~~~i~l~~~~p~~----~~~~~~~~---------~~e~l~~~~~~l~~~~gi~v~vr~ 241 (279)
..+....++++|++.|+++-+..|.-.- .+.++.+. -..++..+.+.++ +.|+.+.|-.
T Consensus 27 ~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~-~~~I~v~VVT 98 (219)
T PTZ00445 27 PHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLK-NSNIKISVVT 98 (219)
T ss_pred HHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHH-HCCCeEEEEE
Confidence 3466788889999988874444443210 11222221 2455777888888 7899876664
No 339
>TIGR02434 CobF precorrin-6A synthase (deacetylating). This model identifies CobF in High GC gram positive, alphaproteobacteria and pseudomonas-related species.
Probab=21.02 E-value=2.9e+02 Score=23.90 Aligned_cols=39 Identities=5% Similarity=0.047 Sum_probs=23.9
Q ss_pred HHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhC
Q 023640 53 EIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG 94 (279)
Q Consensus 53 ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~ 94 (279)
++.+.+.+.... +-+.+.+++ |+|++. .....+++.+++
T Consensus 90 ~~a~~i~~~~~~-g~~Vv~L~~-GDP~~y-st~~~l~~~l~~ 128 (249)
T TIGR02434 90 IWAQAIAEELGD-DGTGAFLVW-GDPSLY-DSTLRILERLRA 128 (249)
T ss_pred HHHHHHHHHHhC-CCcEEEEeC-CCchHh-hhHHHHHHHHHH
Confidence 344555553332 446678888 999995 654556666654
No 340
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=20.99 E-value=5.6e+02 Score=22.26 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=19.5
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecCCccc
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPL 79 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPl 79 (279)
+..+..++.+++..+.. .|+++|..-+ |+|.
T Consensus 68 r~~n~~~l~~~L~~~~~-~Gi~nvL~l~-GD~~ 98 (272)
T TIGR00676 68 IGATREEIREILREYRE-LGIRHILALR-GDPP 98 (272)
T ss_pred cCCCHHHHHHHHHHHHH-CCCCEEEEeC-CCCC
Confidence 34566677777776654 3677777555 5655
No 341
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=20.77 E-value=5.8e+02 Score=22.43 Aligned_cols=176 Identities=10% Similarity=0.101 Sum_probs=88.2
Q ss_pred ccCCCHHHHHHHHHHHhccCCCceEEEecCCc----cccCHHHHHHHHHHHhCCCCCCCCCeEE-EEcCCchhhhHHHhc
Q 023640 46 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE----PLNNYAALVEAVRIMTGLPFQVSPKRIT-VSTVGIVHAINKFHS 120 (279)
Q Consensus 46 ~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GE----Pll~~~~i~~~i~~~~~~g~~~~~~~v~-i~TNG~~~~~~~l~~ 120 (279)
...+++++.++.+..+.+ .|++.|-+.-.-. |-+. +. .+.++.+.+.. ...+. +..| ...++...+
T Consensus 20 ~~~~s~e~k~~ia~~L~~-~Gv~~IEvgsf~~p~~~p~~~-d~-~e~~~~l~~~~----~~~~~~l~~~--~~~ie~A~~ 90 (287)
T PRK05692 20 KRFIPTADKIALIDRLSA-AGLSYIEVASFVSPKWVPQMA-DA-AEVMAGIQRRP----GVTYAALTPN--LKGLEAALA 90 (287)
T ss_pred CCCcCHHHHHHHHHHHHH-cCCCEEEeCCCcCcccccccc-cH-HHHHHhhhccC----CCeEEEEecC--HHHHHHHHH
Confidence 456888888888877665 3787776652222 3333 22 45666665431 12222 2222 223434344
Q ss_pred cCCCceEEEEeCCCCHHH-HhhhcCCCCCCCHHHHHHHHH---HHHHhhCCeEEEE--EEEeCCC--CCcHHHHHHHHHH
Q 023640 121 DLPGLNLAVSLHAPVQDV-RCQIMPAARAFPLEKLMNALK---EYQKNSQQKIFIE--YIMLDGV--NDEEQHAHQLGKL 192 (279)
Q Consensus 121 ~~~~~~i~iSld~~~~~~-~~~i~~~~~~~~~~~i~~~l~---~~~~~~~~~v~i~--~vv~~g~--nd~~~~l~~l~~~ 192 (279)
.+ ...+.+.+.. ++.+ .+.+ +.+.++.++.++ +++++.|..+... +.+.... -.+++.+.++++.
T Consensus 91 ~g-~~~v~i~~~~-s~~~~~~n~-----~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~ 163 (287)
T PRK05692 91 AG-ADEVAVFASA-SEAFSQKNI-----NCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAER 163 (287)
T ss_pred cC-CCEEEEEEec-CHHHHHHHh-----CCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHH
Confidence 33 2234444432 3332 2222 234555444333 4556667766533 3332110 1246788899999
Q ss_pred HhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCC-eE--EEecccccc
Q 023640 193 LETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN-IR--TTVRKQMGQ 245 (279)
Q Consensus 193 l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g-i~--v~vr~~~g~ 245 (279)
+.+.|+. +.+- . .....+++++.++.+.+++..+ ++ +...+..|.
T Consensus 164 ~~~~G~d~i~l~---D-----T~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gl 212 (287)
T PRK05692 164 LFALGCYEISLG---D-----TIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQ 212 (287)
T ss_pred HHHcCCcEEEec---c-----ccCccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCc
Confidence 9888876 4442 1 1122467777777777764443 33 344444443
No 342
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed
Probab=20.68 E-value=2.6e+02 Score=23.71 Aligned_cols=51 Identities=22% Similarity=0.117 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC
Q 023640 52 GEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 110 (279)
Q Consensus 52 ~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG 110 (279)
+++.+.+.+.... +-+.+.++. |+|+++ .....+++.+++.+ ..+.+...-
T Consensus 67 ~~~~~~i~~~~~~-g~~V~~l~~-GDP~~y-s~~~~l~~~l~~~~-----~~veviPGI 117 (249)
T PRK06136 67 EEINRLLVDYARK-GKVVVRLKG-GDPFVF-GRGGEELEALEAAG-----IPYEVVPGI 117 (249)
T ss_pred HHHHHHHHHHHHC-CCeEEEEeC-CCchhh-hcHHHHHHHHHHCC-----CCEEEEcCc
Confidence 4555555443322 333444666 999995 66667778887766 466666543
No 343
>PRK08284 precorrin 6A synthase; Provisional
Probab=20.68 E-value=3.1e+02 Score=23.75 Aligned_cols=27 Identities=7% Similarity=0.112 Sum_probs=19.4
Q ss_pred CCceEEEecCCccccCHHHHHHHHHHHhC
Q 023640 66 NIRNVVFMGMGEPLNNYAALVEAVRIMTG 94 (279)
Q Consensus 66 ~~~~I~fsG~GEPll~~~~i~~~i~~~~~ 94 (279)
|-+.+.++. |+|+++ .....+++.+++
T Consensus 103 g~~Vv~l~~-GDP~~y-s~~~~l~~~l~~ 129 (253)
T PRK08284 103 GGTGAFLVW-GDPSLY-DSTLRILERVRA 129 (253)
T ss_pred CCcEEEEeC-CCcchh-hHHHHHHHHHHh
Confidence 445677888 999995 655667776665
No 344
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=20.59 E-value=1.1e+02 Score=25.96 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhh
Q 023640 82 YAALVEAVRIMTGLPFQVSPKRITVSTVGIVHA 114 (279)
Q Consensus 82 ~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~ 114 (279)
++.+.++++.+++.| +.+.|.|||....
T Consensus 97 ypgv~e~L~~Lk~~G-----~~l~I~Sn~s~~~ 124 (220)
T TIGR01691 97 YPDVPPALEAWLQLG-----LRLAVYSSGSVPA 124 (220)
T ss_pred CcCHHHHHHHHHHCC-----CEEEEEeCCCHHH
Confidence 356789999999988 7999999997543
No 345
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=20.53 E-value=6.6e+02 Score=22.97 Aligned_cols=147 Identities=14% Similarity=0.195 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhccCCCceEEEecCCccccC----HHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhh--------hHHHh
Q 023640 52 GEIVEQLVHASRLSNIRNVVFMGMGEPLNN----YAALVEAVRIMTGLPFQVSPKRITVSTVGIVHA--------INKFH 119 (279)
Q Consensus 52 ~ei~~~i~~~~~~~~~~~I~fsG~GEPll~----~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~--------~~~l~ 119 (279)
++...-++.... .|... .|++.+.|.-. ++.+.++++.+++.| +.+-++-|..... +..+.
T Consensus 16 ~~~~~Yi~~~~~-~Gf~~-IFtsl~~~~~~~~~~~~~~~ell~~Anklg-----~~vivDvnPsil~~l~~S~~~l~~f~ 88 (360)
T COG3589 16 EKDIAYIDRMHK-YGFKR-IFTSLLIPEEDAELYFHRFKELLKEANKLG-----LRVIVDVNPSILKELNISLDNLSRFQ 88 (360)
T ss_pred hhHHHHHHHHHH-cCccc-eeeecccCCchHHHHHHHHHHHHHHHHhcC-----cEEEEEcCHHHHhhcCCChHHHHHHH
Confidence 334444444443 35443 35554555433 567899999999998 7888888875421 11111
Q ss_pred ccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE
Q 023640 120 SDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 199 (279)
Q Consensus 120 ~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~ 199 (279)
+.+ ...+.++. +.+.+.+.+ ....+.++.++. . +.+. .+..+..+-..+..-
T Consensus 89 e~G-~~glRlD~----------------gfS~eei~~-----ms~~~lkieLN~--S---~it~-~l~~l~~~~an~~nl 140 (360)
T COG3589 89 ELG-VDGLRLDY----------------GFSGEEIAE-----MSKNPLKIELNA--S---TITE-LLDSLLAYKANLENL 140 (360)
T ss_pred Hhh-hhheeecc----------------cCCHHHHHH-----HhcCCeEEEEch--h---hhHH-HHHHHHHhccchhhh
Confidence 111 11121111 122222221 112233333332 1 2232 455554444433222
Q ss_pred EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEE
Q 023640 200 VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 238 (279)
Q Consensus 200 i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~ 238 (279)
..-.-|.|. .+...|.+.+.+--++++ .+++++.
T Consensus 141 ~~cHNyYPr----~yTGLS~e~f~~kn~~fk-~~~i~t~ 174 (360)
T COG3589 141 EGCHNYYPR----PYTGLSREHFKRKNEIFK-EYNIKTA 174 (360)
T ss_pred hhcccccCC----cccCccHHHHHHHHHHHH-hcCCceE
Confidence 223346664 455679999999999999 8888753
No 346
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=20.47 E-value=5.7e+02 Score=22.18 Aligned_cols=55 Identities=5% Similarity=0.017 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEEecCCccccC--HHHHHHHHHHHhCC-CCCCCCCeEEEEcCC
Q 023640 48 NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN--YAALVEAVRIMTGL-PFQVSPKRITVSTVG 110 (279)
Q Consensus 48 ~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~--~~~i~~~i~~~~~~-g~~~~~~~v~i~TNG 110 (279)
..+.+.+++.+.++.+ .|.+.|-+-| | +... .+.+..+++.+.+. + ..++|+|.-
T Consensus 21 ~~d~~~i~~~A~~~~~-~GAdiIDVg~-~-~~~~eE~~r~~~~v~~l~~~~~-----~plsIDT~~ 78 (261)
T PRK07535 21 AKDAAFIQKLALKQAE-AGADYLDVNA-G-TAVEEEPETMEWLVETVQEVVD-----VPLCIDSPN 78 (261)
T ss_pred cCCHHHHHHHHHHHHH-CCCCEEEECC-C-CCchhHHHHHHHHHHHHHHhCC-----CCEEEeCCC
Confidence 3566777777777654 3777777766 5 3322 34577777777654 4 578999864
No 347
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=20.39 E-value=6.1e+02 Score=23.14 Aligned_cols=86 Identities=17% Similarity=0.153 Sum_probs=47.7
Q ss_pred EEEcCCchhhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHH
Q 023640 105 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQ 184 (279)
Q Consensus 105 ~i~TNG~~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~ 184 (279)
.+.+-|.+..+......+ ...|.+..+......+ ....+.+++.+.+ +++++.|.++.+.+..... ++..+
T Consensus 9 ll~pag~l~~l~~ai~~G-ADaVY~G~~~~~~R~~------a~nfs~~~l~e~i-~~ah~~gkk~~V~~N~~~~-~~~~~ 79 (347)
T COG0826 9 LLAPAGNLEDLKAAIAAG-ADAVYIGEKEFGLRRR------ALNFSVEDLAEAV-ELAHSAGKKVYVAVNTLLH-NDELE 79 (347)
T ss_pred eecCCCCHHHHHHHHHcC-CCEEEeCCcccccccc------cccCCHHHHHHHH-HHHHHcCCeEEEEeccccc-cchhh
Confidence 344555555444444443 2335565541111111 1236778877888 7888888876544333322 44566
Q ss_pred HHHHHHHHHhhCCcE
Q 023640 185 HAHQLGKLLETFQVV 199 (279)
Q Consensus 185 ~l~~l~~~l~~~~~~ 199 (279)
.+.+..+.+.++|+.
T Consensus 80 ~~~~~l~~l~e~GvD 94 (347)
T COG0826 80 TLERYLDRLVELGVD 94 (347)
T ss_pred HHHHHHHHHHHcCCC
Confidence 677777888777764
No 348
>TIGR03586 PseI pseudaminic acid synthase.
Probab=20.22 E-value=6.5e+02 Score=22.75 Aligned_cols=88 Identities=11% Similarity=0.092 Sum_probs=45.5
Q ss_pred hhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCc-EEEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEE-Eecc
Q 023640 164 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT-TVRK 241 (279)
Q Consensus 164 ~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~-~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v-~vr~ 241 (279)
+.|.++.+ ..|+. +.+++...++++.+.|. ++-++.-. ..|+.+..+--......+++.++++| ..-+
T Consensus 132 ~~gkPvil----stG~~-t~~Ei~~Av~~i~~~g~~~i~LlhC~-----s~YP~~~~~~nL~~i~~lk~~f~~pVG~SDH 201 (327)
T TIGR03586 132 KTGKPIIM----STGIA-TLEEIQEAVEACREAGCKDLVLLKCT-----SSYPAPLEDANLRTIPDLAERFNVPVGLSDH 201 (327)
T ss_pred hcCCcEEE----ECCCC-CHHHHHHHHHHHHHCCCCcEEEEecC-----CCCCCCcccCCHHHHHHHHHHhCCCEEeeCC
Confidence 34666654 45653 78899999999987776 35554322 22332222222223334443566666 3345
Q ss_pred ccccccc---cccc-cccccCcCc
Q 023640 242 QMGQDIS---GACG-QLVVNLPDK 261 (279)
Q Consensus 242 ~~g~~~~---~~cg-~~~~~~~~~ 261 (279)
..|..+. ...| .++.+|++-
T Consensus 202 t~G~~~~~aAva~GA~iIEkH~tl 225 (327)
T TIGR03586 202 TLGILAPVAAVALGACVIEKHFTL 225 (327)
T ss_pred CCchHHHHHHHHcCCCEEEeCCCh
Confidence 5554332 1111 166777654
No 349
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=20.20 E-value=5.5e+02 Score=21.90 Aligned_cols=71 Identities=8% Similarity=0.156 Sum_probs=44.0
Q ss_pred HHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEE
Q 023640 160 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT 237 (279)
Q Consensus 160 ~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v 237 (279)
+.+++.|.++..=.++-|+ ...+.+..+++.+. .+-++..+|...+..+.+...+.+.++.+.++ +.|+++
T Consensus 110 ~~Ik~~g~~~kaGlalnP~--Tp~~~i~~~l~~vD----~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~-~~~~~~ 180 (228)
T PRK08091 110 EWLAKQKTTVLIGLCLCPE--TPISLLEPYLDQID----LIQILTLDPRTGTKAPSDLILDRVIQVENRLG-NRRVEK 180 (228)
T ss_pred HHHHHCCCCceEEEEECCC--CCHHHHHHHHhhcC----EEEEEEECCCCCCccccHHHHHHHHHHHHHHH-hcCCCc
Confidence 4455667644444556665 34455555544332 35667778866666776667888888888888 566553
No 350
>PLN02321 2-isopropylmalate synthase
Probab=20.16 E-value=8.8e+02 Score=24.24 Aligned_cols=167 Identities=8% Similarity=0.053 Sum_probs=78.6
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCC---CCCCCCCeEEEE--cCCchhhhHHHhcc
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL---PFQVSPKRITVS--TVGIVHAINKFHSD 121 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~---g~~~~~~~v~i~--TNG~~~~~~~l~~~ 121 (279)
..+++++-++.+..+.+ .|++.|-. |=|..+++.. +.++.+.+. +.........|. +-+...+++...+.
T Consensus 103 ~~~s~eeKl~Ia~~L~~-lGVd~IEv---GfP~~Sp~D~-e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~a 177 (632)
T PLN02321 103 ATLTSKEKLDIARQLAK-LGVDIIEA---GFPIASPDDL-EAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEA 177 (632)
T ss_pred CCCCHHHHHHHHHHHHH-cCCCEEEE---eCcCCCccHH-HHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHH
Confidence 45888888888877665 47877765 3467775543 335555432 100000001111 11112223333332
Q ss_pred CCCc---eEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCC-eEEEEEEEeCCCCCcHHHHHHHHHHHhhCC
Q 023640 122 LPGL---NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ-KIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 197 (279)
Q Consensus 122 ~~~~---~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~-~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~ 197 (279)
+... .+.+.+.+.+-.....+ +......++.+.+.+ +++++.|. .+.+..- .+.-.+.+.+.++++.+.+.|
T Consensus 178 l~~a~~~~I~i~~stSd~h~~~~l-~~t~ee~l~~~~~~V-~~Ak~~G~~~v~fs~E--Da~rtd~d~l~~~~~~a~~aG 253 (632)
T PLN02321 178 VKHAKRPRIHTFIATSEIHMEHKL-RKTPDEVVEIARDMV-KYARSLGCEDVEFSPE--DAGRSDPEFLYRILGEVIKAG 253 (632)
T ss_pred hcCCCCCEEEEEEcCCHHHHHHHh-CCCHHHHHHHHHHHH-HHHHHcCCceEEEecc--cCCCCCHHHHHHHHHHHHHcC
Confidence 2111 24444433222222223 211222344444455 45555654 2443221 122335778888888888888
Q ss_pred cE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHH
Q 023640 198 VV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 230 (279)
Q Consensus 198 ~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~ 230 (279)
+. +++- . ......++++.++.+.+.
T Consensus 254 a~~I~L~---D-----TvG~~~P~~v~~li~~l~ 279 (632)
T PLN02321 254 ATTLNIP---D-----TVGYTLPSEFGQLIADIK 279 (632)
T ss_pred CCEEEec---c-----cccCCCHHHHHHHHHHHH
Confidence 75 4442 1 112245667777766665
No 351
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=20.10 E-value=1e+02 Score=25.06 Aligned_cols=26 Identities=8% Similarity=0.057 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEEcCCchh
Q 023640 83 AALVEAVRIMTGLPFQVSPKRITVSTVGIVH 113 (279)
Q Consensus 83 ~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~ 113 (279)
+.+.++++.+++.| ..+.|.||+...
T Consensus 87 ~g~~e~L~~l~~~g-----~~~~i~Sn~~~~ 112 (199)
T PRK09456 87 PEVIAIMHKLREQG-----HRVVVLSNTNRL 112 (199)
T ss_pred HHHHHHHHHHHhCC-----CcEEEEcCCchh
Confidence 56889999999988 789999999643
Done!