Query 023640
Match_columns 279
No_of_seqs 170 out of 1937
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 10:18:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023640.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023640hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rfa_A Ribosomal RNA large sub 100.0 1.9E-44 6.6E-49 328.5 23.8 252 8-262 101-366 (404)
2 3c8f_A Pyruvate formate-lyase 100.0 1E-26 3.4E-31 198.8 21.3 196 28-237 26-243 (245)
3 2yx0_A Radical SAM enzyme; pre 99.9 4.1E-25 1.4E-29 198.9 22.5 213 15-237 64-311 (342)
4 2z2u_A UPF0026 protein MJ0257; 99.9 1.6E-25 5.5E-30 198.9 16.8 208 15-238 45-289 (311)
5 1tv8_A MOAA, molybdenum cofact 99.9 1.2E-23 4.1E-28 189.1 24.2 178 21-210 14-201 (340)
6 3can_A Pyruvate-formate lyase- 99.9 3.1E-22 1.1E-26 164.3 17.0 158 68-239 5-180 (182)
7 2a5h_A L-lysine 2,3-aminomutas 99.9 4.2E-20 1.4E-24 170.2 24.0 190 22-230 116-316 (416)
8 3iix_A Biotin synthetase, puta 99.8 5.3E-19 1.8E-23 159.1 22.3 191 25-230 57-257 (348)
9 1r30_A Biotin synthase; SAM ra 99.8 1.3E-16 4.4E-21 144.8 23.1 193 22-230 66-274 (369)
10 3t7v_A Methylornithine synthas 99.7 7.2E-17 2.5E-21 145.4 19.0 193 22-230 62-266 (350)
11 2qgq_A Protein TM_1862; alpha- 99.7 1.1E-14 3.6E-19 128.8 20.2 178 20-208 3-196 (304)
12 1olt_A Oxygen-independent copr 99.5 5.2E-12 1.8E-16 117.6 21.7 207 18-236 50-283 (457)
13 4fhd_A Spore photoproduct lyas 98.6 3.4E-07 1.2E-11 82.0 13.2 158 25-195 111-282 (368)
14 2cw6_A Hydroxymethylglutaryl-C 95.8 0.61 2.1E-05 40.2 16.5 178 47-245 22-213 (298)
15 1ydn_A Hydroxymethylglutaryl-C 92.8 4.1 0.00014 34.8 16.9 179 47-245 21-212 (295)
16 3ewb_X 2-isopropylmalate synth 77.5 32 0.0011 29.2 16.9 177 46-245 21-210 (293)
17 3no5_A Uncharacterized protein 75.3 36 0.0012 28.7 13.2 160 47-230 25-194 (275)
18 3p14_A L-rhamnose isomerase; T 74.8 13 0.00043 33.5 8.5 127 46-196 71-216 (424)
19 3noy_A 4-hydroxy-3-methylbut-2 74.0 22 0.00075 31.3 9.6 35 218-258 248-284 (366)
20 3chv_A Prokaryotic domain of u 71.4 46 0.0016 28.2 13.8 159 48-230 30-198 (284)
21 3eeg_A 2-isopropylmalate synth 68.2 58 0.002 28.0 15.0 180 46-245 22-211 (325)
22 2ztj_A Homocitrate synthase; ( 67.6 65 0.0022 28.4 18.7 172 46-245 19-202 (382)
23 3ble_A Citramalate synthase fr 64.8 69 0.0024 27.7 15.0 181 47-245 36-226 (337)
24 3e02_A Uncharacterized protein 61.7 68 0.0023 27.6 10.2 60 47-111 27-90 (311)
25 3ivs_A Homocitrate synthase, m 61.3 93 0.0032 28.0 17.9 177 46-245 55-236 (423)
26 2y7e_A 3-keto-5-aminohexanoate 57.2 88 0.003 26.4 14.6 159 48-230 30-200 (282)
27 2v9d_A YAGE; dihydrodipicolini 56.0 1E+02 0.0035 26.7 10.7 131 47-191 47-184 (343)
28 1o98_A 2,3-bisphosphoglycerate 55.8 63 0.0022 29.8 9.5 78 152-234 95-175 (511)
29 1s4d_A Uroporphyrin-III C-meth 55.7 31 0.0011 29.0 7.0 57 48-112 75-131 (280)
30 3ndc_A Precorrin-4 C(11)-methy 55.0 15 0.00052 30.6 4.9 57 48-112 59-115 (264)
31 3hh1_A Tetrapyrrole methylase 54.6 22 0.00074 25.5 5.1 43 51-96 65-108 (117)
32 2ftp_A Hydroxymethylglutaryl-C 54.2 99 0.0034 26.1 17.5 176 47-245 25-216 (302)
33 3v39_A D-alanyl-D-alanine carb 53.6 9.9 0.00034 34.3 3.6 30 68-97 68-97 (418)
34 2wul_A Glutaredoxin related pr 52.1 26 0.00089 25.5 5.2 21 19-40 20-40 (118)
35 2l7x_A Envelope glycoprotein; 51.5 4.1 0.00014 26.7 0.6 12 30-41 27-39 (77)
36 1f6k_A N-acetylneuraminate lya 51.5 99 0.0034 26.0 9.6 131 47-191 19-156 (293)
37 3rmj_A 2-isopropylmalate synth 50.8 1.3E+02 0.0044 26.4 17.4 177 46-245 28-217 (370)
38 4e16_A Precorrin-4 C(11)-methy 49.9 17 0.0006 30.0 4.4 57 48-112 60-116 (253)
39 1w5d_A Penicillin-binding prot 48.9 18 0.00062 33.0 4.7 43 69-111 90-132 (462)
40 1ydo_A HMG-COA lyase; TIM-barr 48.6 1.3E+02 0.0043 25.6 18.5 170 47-239 23-206 (307)
41 2l69_A Rossmann 2X3 fold prote 47.3 69 0.0024 22.2 7.9 71 150-237 34-104 (134)
42 3ipz_A Monothiol glutaredoxin- 46.6 27 0.00092 24.6 4.5 68 18-88 17-93 (109)
43 3gx8_A Monothiol glutaredoxin- 46.5 31 0.001 24.9 4.9 22 18-40 15-36 (121)
44 1cbf_A Cobalt-precorrin-4 tran 46.5 24 0.00081 29.7 4.8 56 49-112 77-132 (285)
45 1w79_A D-alanyl-D-alanine carb 45.6 22 0.00076 32.7 4.8 43 68-110 86-128 (489)
46 2qbu_A Precorrin-2 methyltrans 43.4 29 0.001 27.9 4.8 53 52-112 81-133 (232)
47 2wem_A Glutaredoxin-related pr 41.8 43 0.0015 24.1 5.0 66 19-87 20-95 (118)
48 3kws_A Putative sugar isomeras 41.4 1.4E+02 0.0049 24.2 15.3 40 49-96 38-77 (287)
49 2nx9_A Oxaloacetate decarboxyl 40.5 2.1E+02 0.0072 25.9 15.9 166 48-245 26-214 (464)
50 2e0n_A Precorrin-2 C20-methylt 40.2 29 0.00099 28.6 4.3 53 52-112 83-135 (259)
51 3igz_B Cofactor-independent ph 40.1 2.2E+02 0.0076 26.5 10.5 79 152-235 108-192 (561)
52 2p0o_A Hypothetical protein DU 40.1 1.9E+02 0.0066 25.4 10.0 149 50-238 15-175 (372)
53 2ybo_A Methyltransferase; SUMT 39.7 38 0.0013 28.6 5.1 56 49-112 86-141 (294)
54 3c6c_A 3-keto-5-aminohexanoate 38.9 72 0.0025 27.5 6.7 58 48-109 44-105 (316)
55 1d8w_A L-rhamnose isomerase; b 38.6 1.9E+02 0.0065 25.7 9.2 131 46-195 74-217 (426)
56 3b4u_A Dihydrodipicolinate syn 38.5 1.8E+02 0.006 24.4 12.6 131 47-190 19-158 (294)
57 1ea9_C Cyclomaltodextrinase; h 38.4 51 0.0017 30.8 6.2 56 183-239 171-237 (583)
58 3qfe_A Putative dihydrodipicol 38.2 1.9E+02 0.0064 24.7 10.5 133 47-191 27-166 (318)
59 2f06_A Conserved hypothetical 37.8 23 0.00078 26.3 3.0 73 163-238 63-136 (144)
60 1ve2_A Uroporphyrin-III C-meth 37.6 41 0.0014 27.2 4.8 56 49-112 62-117 (235)
61 1lwj_A 4-alpha-glucanotransfer 37.2 52 0.0018 29.4 5.8 21 218-239 68-88 (441)
62 1va0_A Uroporphyrin-III C-meth 36.9 44 0.0015 27.1 4.9 56 49-112 59-114 (239)
63 3e49_A Uncharacterized protein 36.9 2E+02 0.0068 24.6 15.2 156 47-227 27-219 (311)
64 2pfu_A Biopolymer transport EX 36.8 31 0.0011 23.6 3.4 56 48-109 38-93 (99)
65 2pr7_A Haloacid dehalogenase/e 36.7 37 0.0013 23.9 4.0 27 83-114 21-47 (137)
66 2kl5_A Uncharacterized protein 36.1 9.2 0.00032 27.4 0.4 11 29-39 86-96 (110)
67 3lmz_A Putative sugar isomeras 35.8 1.7E+02 0.0057 23.4 8.5 45 151-203 88-132 (257)
68 1f6y_A 5-methyltetrahydrofolat 35.4 1.9E+02 0.0065 23.9 15.8 166 47-241 20-197 (262)
69 3m5v_A DHDPS, dihydrodipicolin 35.2 2E+02 0.0069 24.1 10.1 132 47-192 23-161 (301)
70 2z1k_A (NEO)pullulanase; hydro 35.0 28 0.00095 31.5 3.6 20 218-238 95-114 (475)
71 3qze_A DHDPS, dihydrodipicolin 34.7 2.1E+02 0.0072 24.2 10.3 131 47-191 39-175 (314)
72 3eb2_A Putative dihydrodipicol 34.5 2.1E+02 0.0071 24.1 9.9 131 47-191 20-156 (300)
73 1j0h_A Neopullulanase; beta-al 34.1 46 0.0016 31.1 5.1 55 184-239 176-241 (588)
74 1vr6_A Phospho-2-dehydro-3-deo 33.5 1.4E+02 0.0049 25.9 7.8 67 171-238 107-174 (350)
75 1wzl_A Alpha-amylase II; pullu 33.3 52 0.0018 30.7 5.3 53 186-239 175-238 (585)
76 4e84_A D-beta-D-heptose 7-phos 33.0 2.3E+02 0.0078 24.2 11.7 85 66-169 186-270 (352)
77 3l21_A DHDPS, dihydrodipicolin 32.3 2.3E+02 0.0078 23.9 9.4 131 47-191 31-167 (304)
78 3kwp_A Predicted methyltransfe 32.3 85 0.0029 26.6 6.1 55 50-112 73-128 (296)
79 1ht6_A AMY1, alpha-amylase iso 32.1 71 0.0024 28.1 5.8 55 184-239 21-87 (405)
80 3fkr_A L-2-keto-3-deoxyarabona 31.9 2.3E+02 0.008 23.9 12.3 131 47-191 24-162 (309)
81 3e96_A Dihydrodipicolinate syn 31.5 2.4E+02 0.0082 23.9 10.5 48 47-95 28-77 (316)
82 1zco_A 2-dehydro-3-deoxyphosph 31.3 1.3E+02 0.0045 24.9 7.0 61 176-237 29-90 (262)
83 1wyz_A Putative S-adenosylmeth 31.3 59 0.002 26.5 4.8 52 52-111 70-122 (242)
84 1g94_A Alpha-amylase; beta-alp 31.1 54 0.0018 29.4 4.9 55 183-238 13-82 (448)
85 1u83_A Phosphosulfolactate syn 30.9 66 0.0023 27.1 4.9 54 49-113 50-103 (276)
86 2wci_A Glutaredoxin-4; redox-a 30.8 63 0.0022 23.8 4.5 66 19-87 35-109 (135)
87 3na8_A Putative dihydrodipicol 30.4 2.5E+02 0.0085 23.8 10.3 131 47-191 40-177 (315)
88 3daq_A DHDPS, dihydrodipicolin 28.9 2.5E+02 0.0087 23.4 10.4 129 49-191 20-154 (292)
89 2p9j_A Hypothetical protein AQ 28.5 1.7E+02 0.0057 21.3 6.7 35 83-122 39-73 (162)
90 3apt_A Methylenetetrahydrofola 28.1 1.1E+02 0.0039 26.0 6.2 44 150-199 158-201 (310)
91 2lnd_A De novo designed protei 27.8 1.4E+02 0.0048 20.0 5.4 26 82-112 37-62 (112)
92 3vgf_A Malto-oligosyltrehalose 27.8 73 0.0025 29.6 5.3 56 183-239 118-186 (558)
93 2wc7_A Alpha amylase, catalyti 27.3 44 0.0015 30.3 3.6 20 218-238 101-120 (488)
94 2z6r_A Diphthine synthase; met 27.2 57 0.0019 26.9 4.0 53 51-112 63-116 (265)
95 3lot_A Uncharacterized protein 26.8 3E+02 0.01 23.5 15.7 158 47-230 27-224 (314)
96 3inp_A D-ribulose-phosphate 3- 26.5 2.7E+02 0.0091 22.8 9.4 110 66-203 109-222 (246)
97 3a3d_A PBP4, penicillin-bindin 26.5 71 0.0024 28.9 4.8 42 69-110 81-122 (453)
98 2jwk_A Protein TOLR; periplasm 26.3 1.3E+02 0.0043 19.0 5.3 48 47-96 25-72 (74)
99 4aie_A Glucan 1,6-alpha-glucos 26.2 71 0.0024 29.1 4.9 20 218-238 78-97 (549)
100 3fvv_A Uncharacterized protein 26.1 1.1E+02 0.0037 23.7 5.5 38 79-122 92-129 (232)
101 1vs1_A 3-deoxy-7-phosphoheptul 25.9 1.3E+02 0.0044 25.2 6.0 61 176-237 44-105 (276)
102 3qc0_A Sugar isomerase; TIM ba 25.8 2.5E+02 0.0086 22.3 9.3 42 49-97 18-59 (275)
103 3dhu_A Alpha-amylase; structur 25.0 76 0.0026 28.3 4.7 21 218-239 82-102 (449)
104 3p6l_A Sugar phosphate isomera 25.0 2.6E+02 0.0089 22.2 8.3 71 155-242 65-136 (262)
105 1qwg_A PSL synthase;, (2R)-pho 24.6 1.8E+02 0.0062 24.0 6.5 54 49-112 23-77 (251)
106 2q02_A Putative cytoplasmic pr 24.5 2.5E+02 0.0085 22.3 7.6 102 115-230 53-162 (272)
107 3e96_A Dihydrodipicolinate syn 24.3 2E+02 0.0069 24.4 7.1 76 182-266 91-168 (316)
108 1wde_A Probable diphthine synt 24.1 32 0.0011 29.1 1.9 40 66-112 83-122 (294)
109 1pjq_A CYSG, siroheme synthase 24.1 63 0.0021 29.2 4.0 56 49-112 277-332 (457)
110 1gcy_A Glucan 1,4-alpha-maltot 24.1 1.6E+02 0.0055 26.9 6.8 21 218-239 91-111 (527)
111 2ex2_A Penicillin-binding prot 24.0 73 0.0025 28.9 4.4 29 69-97 81-109 (458)
112 2hl0_A Threonyl-tRNA synthetas 23.7 83 0.0028 23.7 3.8 49 187-238 62-113 (143)
113 1ji1_A Alpha-amylase I; beta/a 23.6 1.1E+02 0.0039 28.7 5.8 56 183-239 190-261 (637)
114 1wza_A Alpha-amylase A; hydrol 23.0 1.1E+02 0.0037 27.6 5.4 21 218-239 80-100 (488)
115 3obe_A Sugar phosphate isomera 22.7 1.1E+02 0.0038 25.5 5.1 83 156-242 79-171 (305)
116 3k8k_A Alpha-amylase, SUSG; al 22.7 1.1E+02 0.0039 29.1 5.6 54 184-238 60-124 (669)
117 2lqo_A Putative glutaredoxin R 22.1 1.1E+02 0.0039 20.7 4.2 39 53-92 41-82 (92)
118 3c8y_A Iron hydrogenase 1; dit 22.0 9.7 0.00033 35.8 -2.0 38 69-112 232-272 (574)
119 3m07_A Putative alpha amylase; 21.9 1.4E+02 0.0046 28.2 5.9 57 182-239 152-221 (618)
120 4do7_A Amidohydrolase 2; enzym 21.2 55 0.0019 27.5 2.8 70 54-129 90-164 (303)
121 4ef8_A Dihydroorotate dehydrog 21.0 3.6E+02 0.012 23.3 8.1 90 150-245 110-204 (354)
122 3c7m_A Thiol:disulfide interch 20.5 39 0.0013 25.9 1.6 26 10-40 9-34 (195)
123 1vhv_A Diphthine synthase; str 20.4 92 0.0032 25.7 4.0 50 54-112 77-126 (268)
124 3ib6_A Uncharacterized protein 20.2 58 0.002 24.9 2.6 25 83-112 37-61 (189)
125 4aef_A Neopullulanase (alpha-a 20.1 79 0.0027 29.8 3.9 54 185-239 240-304 (645)
No 1
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=100.00 E-value=1.9e-44 Score=328.54 Aligned_cols=252 Identities=42% Similarity=0.729 Sum_probs=209.1
Q ss_pred ccccCcc-CCCCCceEEEEeccCCcCccCccccCCCCCCccCCCHHHHHHHHHHHhcc---------CCCceEEEecCCc
Q 023640 8 GKYNGKP-RPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SNIRNVVFMGMGE 77 (279)
Q Consensus 8 ~~~~~~~-~p~~~~~~l~i~~~~gCNl~C~yC~~~~~~~~~~~~~~ei~~~i~~~~~~---------~~~~~I~fsG~GE 77 (279)
|..++.+ +|...|.|+++|++.|||++|.||+++..+..+.++++|+++++...... .++..|+|+|+||
T Consensus 101 g~~iEtV~i~~~~r~tlcVSsq~GCnl~C~fC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~g~~gg~~i~~Ivf~GgGE 180 (404)
T 3rfa_A 101 DQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGE 180 (404)
T ss_dssp TEEEEEEEEECSSCEEEECCCEEECSSCCTTCGGGTTCEEEECCHHHHHHHHHHHHHHHCCHHHHSSCSCSEEEECSSSC
T ss_pred CceEEEEEEecCCCceEEEEeCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhcccccCCCccEEEEeCCCC
Confidence 5566777 89889999999999999999999999877677889999999998865432 2478899997699
Q ss_pred cccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhhhHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHH
Q 023640 78 PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 156 (279)
Q Consensus 78 Pll~~~~i~~~i~~~~~~-g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~ 156 (279)
||++++++.++++.+++. |++++..+++|+|||+.+.+.++++.. ...+.||||+++++.|+.++|.++.++++.+++
T Consensus 181 PLln~d~v~~~i~~lk~~~Gl~~s~r~itlsTnG~~p~i~~L~~~~-d~~LaiSLka~d~e~~~~i~pv~~~~~le~vl~ 259 (404)
T 3rfa_A 181 PLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMI-DVALAISLHAPNDEIRDEIVPINKKYNIETFLA 259 (404)
T ss_dssp GGGCHHHHHHHHHHHHSTTTTCCCGGGEEEEESCCHHHHHHHHHHC-CCEEEEECCCSSHHHHHHHSGGGGTSCHHHHHH
T ss_pred cccCHHHHHHHHHHHHhhcCcCcCCCceEEECCCcHHHHHHHHHhh-cceEEecccCCCHHHHHHhcCCccCCCHHHHHH
Confidence 999999999999999984 866666699999999987777777763 456789999999999999998777789999999
Q ss_pred HHHHHHHhhCC---eEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcC
Q 023640 157 ALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 233 (279)
Q Consensus 157 ~l~~~~~~~~~---~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~ 233 (279)
++++++.+.+. ++.+++++++|+||+++++.+++++++.+++.++++||+|. +..++++++.+++++|+++++ .+
T Consensus 260 ai~~~~~~~g~~~~~V~ie~vLI~GvNDs~e~~~~La~ll~~l~~~VnLIpynP~-~~~~~~~ps~e~i~~f~~iL~-~~ 337 (404)
T 3rfa_A 260 AVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPF-PGAPYGRSSNSRIDRFSKVLM-SY 337 (404)
T ss_dssp HHHHHHHHCTTTTTCEEEEEEEBTTTTCSHHHHHHHHHHTTTSCEEEEEEECCCC-TTCCCCBCCHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHhCCCcccEEEEEEEecCCCCCHHHHHHHHHHHHcCCCcEEEEeccCC-CCCCCCCCCHHHHHHHHHHHH-Hc
Confidence 99888888787 89999999999999999999999999999888999999998 577889999999999999999 89
Q ss_pred CeEEEeccccccccccccccccccCcCcc
Q 023640 234 NIRTTVRKQMGQDISGACGQLVVNLPDKI 262 (279)
Q Consensus 234 gi~v~vr~~~g~~~~~~cg~~~~~~~~~~ 262 (279)
|+.+.+|..+|.||.++|||...+.-|+.
T Consensus 338 Gi~vtiR~~~G~di~aaCGQL~~~~~~~~ 366 (404)
T 3rfa_A 338 GFTTIVRKTRGDDIDAACGQLAGDVIDRT 366 (404)
T ss_dssp TCEEEECCCCCC-----------------
T ss_pred CCcEEEcCCCCcccccccccchhhhhhhh
Confidence 99999999999999999999988766543
No 2
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=99.95 E-value=1e-26 Score=198.80 Aligned_cols=196 Identities=17% Similarity=0.350 Sum_probs=156.6
Q ss_pred cCCcCccCccccCCCC---CCccCCCHHHHHHHHHHHhcc--CCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCC
Q 023640 28 QVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRL--SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPK 102 (279)
Q Consensus 28 ~~gCNl~C~yC~~~~~---~~~~~~~~~ei~~~i~~~~~~--~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~ 102 (279)
+.+||++|.||+.+.. ...+.++++++++.+.+.... .++..|.|+| |||+++++.+.++++.+++.| .
T Consensus 26 t~~Cn~~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~G-GEP~l~~~~l~~l~~~~~~~~-----~ 99 (245)
T 3c8f_A 26 FQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASG-GEAILQAEFVRDWFRACKKEG-----I 99 (245)
T ss_dssp ESCCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGGGHHHHTSTTCEEEEEE-SCGGGGHHHHHHHHHHHHTTT-----C
T ss_pred eCCCCCCCCCCCCchhcccccCccCCHHHHHHHHHHhhhhhcCCCCeEEEEC-CCcCCCHHHHHHHHHHHHHcC-----C
Confidence 4799999999998632 234568899999988865432 1357899999 999999777899999999987 5
Q ss_pred eEEEEcCCch--hh--hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCC
Q 023640 103 RITVSTVGIV--HA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDG 178 (279)
Q Consensus 103 ~v~i~TNG~~--~~--~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g 178 (279)
.+.+.|||+. .. +.++.+. ...+.||+|+.+++.++.+++ .+++++++++ +.+++.|.++.++++++++
T Consensus 100 ~i~i~Tng~~~~~~~~~~~l~~~--~~~v~isld~~~~~~~~~~~~----~~~~~~~~~i-~~l~~~g~~v~i~~~~~~g 172 (245)
T 3c8f_A 100 HTCLDTNGFVRRYDPVIDELLEV--TDLVMLDLKQMNDEIHQNLVG----VSNHRTLEFA-KYLANKNVKVWIRYVVVPG 172 (245)
T ss_dssp CEEEEECCCCCCCCHHHHHHHHT--CSEEEEECCCSSHHHHHHHHS----SCSHHHHHHH-HHHHHHTCCEEEEEEECTT
T ss_pred cEEEEeCCCcCcCHHHHHHHHHh--CCEEEEeCCCCCHHHhhhccC----CCHHHHHHHH-HHHHhcCCEEEEEEeecCC
Confidence 7999999975 22 3445443 234789999999999998864 2469999999 4566788899999999999
Q ss_pred CCCcHHHHHHHHHHHhhCCc--EEEEEecCCCCC-----------CCCcCCCCHHHHHHHHHHHHhcCCeEE
Q 023640 179 VNDEEQHAHQLGKLLETFQV--VVNLIPFNPIGS-----------VSQFRTSSDDKVSSFQKILRGSYNIRT 237 (279)
Q Consensus 179 ~nd~~~~l~~l~~~l~~~~~--~i~l~~~~p~~~-----------~~~~~~~~~e~l~~~~~~l~~~~gi~v 237 (279)
.+++.+++.++++++.+++. .+++.||.|.+. ...+++++.++++++.+.++ +.|+.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~v 243 (245)
T 3c8f_A 173 WSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILE-QYGHKV 243 (245)
T ss_dssp TTCCHHHHHHHHHHHHHHCCEEEEEEEECCCCSHHHHHHTTCCCTTTTCCCCCHHHHHHHHHHHH-TTTCCB
T ss_pred CCCCHHHHHHHHHHHHhcCCCceeEEEeccccChhHHHhhCcccccccCCCCCHHHHHHHHHHHH-hcCCee
Confidence 99999999999999999984 488999998641 12346789999999999999 788764
No 3
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=99.94 E-value=4.1e-25 Score=198.92 Aligned_cols=213 Identities=16% Similarity=0.169 Sum_probs=161.8
Q ss_pred CCCCCceEEEEecc-CCcCccCccccCCCCC------CccCCCHHHHHHHHHHHhcc-------------------CCCc
Q 023640 15 RPGGPRSTLCISSQ-VGCKMGCNFCATGTMG------FKSNLSSGEIVEQLVHASRL-------------------SNIR 68 (279)
Q Consensus 15 ~p~~~~~~l~i~~~-~gCNl~C~yC~~~~~~------~~~~~~~~ei~~~i~~~~~~-------------------~~~~ 68 (279)
+|...+..+.++++ .|||++|.||+++... ..+.++++++++++.+.... ..+.
T Consensus 64 ~~~~~~~~l~i~~~~~gCnl~C~fC~~~~~~~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~~g~~~v~~~~~~e~~~~~ 143 (342)
T 2yx0_A 64 YGIHSHRCLQMTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPT 143 (342)
T ss_dssp HCCCGGGEEEEESCSSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCC
T ss_pred eeecCCCeEEEEeChhhhhCcCcccCCCCCCCcccccccCcCCHHHHHHHHHHHHHHHhhccCCCcccchhhhhhccCCC
Confidence 45556677888777 6999999999986431 34568899999888764221 1246
Q ss_pred eEEEe-cCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhh-hHHHhccC-CCceEEEEeCCCCHHHHhhhcCC
Q 023640 69 NVVFM-GMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHA-INKFHSDL-PGLNLAVSLHAPVQDVRCQIMPA 145 (279)
Q Consensus 69 ~I~fs-G~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~-~~~l~~~~-~~~~i~iSld~~~~~~~~~i~~~ 145 (279)
.|+|+ | |||++++ ++.++++.+++.| ..+.+.|||+++. ++++.+.+ ....+.||+|+++++.|+.+++.
T Consensus 144 ~v~~sgg-GEPll~~-~l~~ll~~~~~~g-----~~i~l~TNG~~~e~l~~L~~~g~~~~~l~isld~~~~e~~~~i~~~ 216 (342)
T 2yx0_A 144 HAAISLS-GEPMLYP-YMGDLVEEFHKRG-----FTTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIP 216 (342)
T ss_dssp EEEECSS-SCGGGST-THHHHHHHHHHTT-----CEEEEEECSCCHHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCB
T ss_pred EEEEcCC-Ccccchh-hHHHHHHHHHHCC-----CcEEEEcCCCcHHHHHHHHhcCCCCCEEEEEccCCCHHHHHHHhCC
Confidence 79998 6 9999985 7999999999887 6999999998854 44555532 13568899999999999999865
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCC----CCcCCCCHH
Q 023640 146 ARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSV----SQFRTSSDD 220 (279)
Q Consensus 146 ~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~----~~~~~~~~e 220 (279)
...++++++++++ +.+.+.|.++.+++++++|.|++ ++.+++++++++++. +++.||+|.+.. ..+..++.+
T Consensus 217 ~~~~~~~~~~~~i-~~l~~~g~~v~i~~~l~~g~n~~--~~~~l~~~l~~~~~~~i~l~~~~~~~~~~~~l~~~~~~~~e 293 (342)
T 2yx0_A 217 MIPDGWERILRFL-ELMRDLPTRTVVRLTLVKGENMH--SPEKYAKLILKARPMFVEAKAYMFVGYSRNRLTINNMPSHQ 293 (342)
T ss_dssp SSSCHHHHHHHHH-HHHTTCSSEEEEEEEECTTTTCC--CHHHHHHHHHHHCCSEEEEEECC------CCCCGGGSCCHH
T ss_pred CcccHHHHHHHHH-HHHHhCCCCEEEEEEEECCccHH--HHHHHHHHHHHcCCCEEEEEeeeecCCCcccccccCCCCHH
Confidence 4457899999999 45567788999999999988876 389999999998765 888999987521 134578899
Q ss_pred HHHHHHHHHHhcC-CeEE
Q 023640 221 KVSSFQKILRGSY-NIRT 237 (279)
Q Consensus 221 ~l~~~~~~l~~~~-gi~v 237 (279)
++.++.+.+.+.. ++++
T Consensus 294 ~~~~~~~~l~~~l~~~~I 311 (342)
T 2yx0_A 294 DIREFAEALVKHLPGYHI 311 (342)
T ss_dssp HHHHHHHHHHTTCTTEEE
T ss_pred HHHHHHHHHHHhccCCce
Confidence 9999999998322 4554
No 4
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=1.6e-25 Score=198.95 Aligned_cols=208 Identities=18% Similarity=0.198 Sum_probs=145.1
Q ss_pred CCCCCceEEEEecc-CCcCccCccccCCCCC----------CccCCCHHHHHHHHHHHhc-----c--------------
Q 023640 15 RPGGPRSTLCISSQ-VGCKMGCNFCATGTMG----------FKSNLSSGEIVEQLVHASR-----L-------------- 64 (279)
Q Consensus 15 ~p~~~~~~l~i~~~-~gCNl~C~yC~~~~~~----------~~~~~~~~ei~~~i~~~~~-----~-------------- 64 (279)
+|......+.++++ .|||++|.||+++... ..+.++++++++++.+... +
T Consensus 45 ~~~~~~~~l~i~~t~~~Cn~~C~fC~~~~~~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~~~~~~~g~~~v~~~~r~~~ 124 (311)
T 2z2u_A 45 YGIETHRCIQCTPSVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKE 124 (311)
T ss_dssp HCCCGGGEEEEESCSSCCSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHH
T ss_pred eeecCCCeEEeccChhHHhCcCcccCCCCCCcccccccccCccccCCHHHHHHHHHHHHHHHhhccCCCcCcchhhhhhh
Confidence 45556667888888 7999999999976311 2367889999887765421 0
Q ss_pred -CCCceEEEe-cCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhccCCCceEEEEeCCCCHHHHhhh
Q 023640 65 -SNIRNVVFM-GMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQI 142 (279)
Q Consensus 65 -~~~~~I~fs-G~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i 142 (279)
..+..|+|+ | ||||++ +.+.++++.+++.| +.+.+.|||+.++ .+...+ ...+.||+|+.+++.|+.+
T Consensus 125 ~~~~~~i~~s~g-GEPll~-~~l~~li~~~~~~g-----~~~~l~TNG~~~~--~l~~L~-~~~v~isld~~~~~~~~~i 194 (311)
T 2z2u_A 125 ALEPKHVAISLS-GEPTLY-PYLDELIKIFHKNG-----FTTFVVSNGILTD--VIEKIE-PTQLYISLDAYDLDSYRRI 194 (311)
T ss_dssp HTSCCEEEECSS-SCGGGS-TTHHHHHHHHHHTT-----CEEEEEECSCCHH--HHHHCC-CSEEEEECCCSSTTTC---
T ss_pred ccCCCEEEEeCC-cCccch-hhHHHHHHHHHHCC-----CcEEEECCCCCHH--HHHhCC-CCEEEEEeecCCHHHHHHH
Confidence 124679999 7 999997 56999999999887 6899999999743 333333 3568899999999999988
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCC----CcCCC
Q 023640 143 MPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVS----QFRTS 217 (279)
Q Consensus 143 ~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~----~~~~~ 217 (279)
++. +..+++.++++++ .+.+.+ ++.+++++++|.|+ ++.++++++.++++. +++.||+|.+... ....+
T Consensus 195 ~~~-~~~~~~~v~~~i~-~l~~~g-~v~i~~~~~~g~n~---~~~~~~~~~~~~~~~~i~l~~~~p~g~~~~~~~~~~~~ 268 (311)
T 2z2u_A 195 CGG-KKEYWESILNTLD-ILKEKK-RTCIRTTLIRGYND---DILKFVELYERADVHFIELKSYMHVGYSQKRLKKEDML 268 (311)
T ss_dssp -CC-CHHHHHHHHHHHH-HHTTSS-SEEEEEEECTTTTC---CGGGTHHHHHHHTCSEEEEEECC------------CCC
T ss_pred hCC-ccchHHHHHHHHH-HHHhcC-CEEEEEEEECCcch---hHHHHHHHHHHcCCCEEEEEeeEEccccccccccccCC
Confidence 754 2357999999995 455677 89999999999887 688899999888875 8999999975222 12468
Q ss_pred CHHHHHHHHHHHHhcCCeEEE
Q 023640 218 SDDKVSSFQKILRGSYNIRTT 238 (279)
Q Consensus 218 ~~e~l~~~~~~l~~~~gi~v~ 238 (279)
+.+++.++.+.+.+..|+.+.
T Consensus 269 ~~~e~~~~~~~l~~~~g~~~~ 289 (311)
T 2z2u_A 269 QHDEILKLAKMLDENSSYKLI 289 (311)
T ss_dssp CHHHHHHHHHHHHTSSSEEEE
T ss_pred CHHHHHHHHHHHHHhcCceEE
Confidence 899999999999833676654
No 5
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=99.92 E-value=1.2e-23 Score=189.09 Aligned_cols=178 Identities=16% Similarity=0.265 Sum_probs=141.1
Q ss_pred eEEEEeccCCcCccCccccCCC-----C---CCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHH
Q 023640 21 STLCISSQVGCKMGCNFCATGT-----M---GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIM 92 (279)
Q Consensus 21 ~~l~i~~~~gCNl~C~yC~~~~-----~---~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~ 92 (279)
..+.+++|.+||++|.||+.+. . .....++.+++.+.+..+.. .++..|.|+| ||||+++ .+.++++.+
T Consensus 14 ~~l~i~~T~~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~~~~-~g~~~i~~tG-GEPll~~-~l~~li~~~ 90 (340)
T 1tv8_A 14 RDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAE-LGVKKIRITG-GEPLMRR-DLDVLIAKL 90 (340)
T ss_dssp CEEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHH-TTCCEEEEES-SCGGGST-THHHHHHHH
T ss_pred CeEEEEeCCCcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHHHHH-CCCCEEEEeC-CCccchh-hHHHHHHHH
Confidence 3677788999999999998854 1 12356889999888887664 4788999999 9999985 578999999
Q ss_pred hCCCCCCCCCeEEEEcCCchhh--hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEE
Q 023640 93 TGLPFQVSPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 170 (279)
Q Consensus 93 ~~~g~~~~~~~v~i~TNG~~~~--~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~ 170 (279)
++.+. ...+.++|||++.. ...+.+.+ ...|.||+|+.+++.++.+++. ..++++++++++ .+++.|..+.
T Consensus 91 ~~~~~---~~~i~i~TNG~ll~~~~~~L~~~g-~~~v~iSld~~~~~~~~~i~~~--~~~~~~v~~~i~-~l~~~g~~v~ 163 (340)
T 1tv8_A 91 NQIDG---IEDIGLTTNGLLLKKHGQKLYDAG-LRRINVSLDAIDDTLFQSINNR--NIKATTILEQID-YATSIGLNVK 163 (340)
T ss_dssp TTCTT---CCEEEEEECSTTHHHHHHHHHHHT-CCEEEEECCCSSHHHHHHHHSS--CCCHHHHHHHHH-HHHHTTCEEE
T ss_pred HhCCC---CCeEEEEeCccchHHHHHHHHHCC-CCEEEEecCCCCHHHHHHhhCC--CCCHHHHHHHHH-HHHHCCCCEE
Confidence 98751 12899999998753 33444443 3468899999999999988653 238999999994 5667788999
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCC
Q 023640 171 IEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGS 210 (279)
Q Consensus 171 i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~ 210 (279)
++++++++.|+ +++.++++++.++++.+.++.+.|.+.
T Consensus 164 i~~vv~~g~n~--~ei~~~~~~~~~~g~~~~~i~~~p~~~ 201 (340)
T 1tv8_A 164 VNVVIQKGIND--DQIIPMLEYFKDKHIEIRFIEFMDVGN 201 (340)
T ss_dssp EEEEECTTTTG--GGHHHHHHHHHHTTCCEEEEECCCBCS
T ss_pred EEEEEeCCCCH--HHHHHHHHHHHhcCCeEEEEEeeEcCC
Confidence 99999998765 479999999999998888888888753
No 6
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=99.89 E-value=3.1e-22 Score=164.26 Aligned_cols=158 Identities=19% Similarity=0.367 Sum_probs=126.5
Q ss_pred ceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhh--hHHHhccCCCceEEEEeCCCCHHHHhhhcCC
Q 023640 68 RNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 145 (279)
Q Consensus 68 ~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~--~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~ 145 (279)
..|+|+| ||||++++.+.++++.+++.| ..+.+.|||++.. +.++.+. ...+.||+|+.+++.|+.+++
T Consensus 5 ~~v~~tG-GEPll~~~~~~~l~~~~~~~g-----~~~~l~TNG~l~~~~~~~l~~~--~d~v~isld~~~~~~~~~~~g- 75 (182)
T 3can_A 5 GGVTFCG-GEPLLHPEFLIDILKRCGQQG-----IHRAVDTTLLARKETVDEVMRN--CELLLIDLKSMDSTVHQTFCD- 75 (182)
T ss_dssp CCEEECS-STGGGSHHHHHHHHHHHHHTT-----CCEEEECTTCCCHHHHHHHHHT--CSEEEEECCCSCHHHHHHHHS-
T ss_pred CEEEEEc-ccccCCHHHHHHHHHHHHHCC-----CcEEEECCCCCCHHHHHHHHhh--CCEEEEECCCCCHHHHHHHhC-
Confidence 5799999 999999876679999999987 6899999998642 3344443 234779999999999999874
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhC-Cc--EEEEEecCCCCCCC----------
Q 023640 146 ARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF-QV--VVNLIPFNPIGSVS---------- 212 (279)
Q Consensus 146 ~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~-~~--~i~l~~~~p~~~~~---------- 212 (279)
.+++.++++++ .+.+.+..+.+++++++++|++.+++.++++++.++ ++ .+.++||+|.+...
T Consensus 76 ---~~~~~i~~~i~-~l~~~g~~v~i~~~v~~~~n~n~~~~~~~~~~~~~~~g~~~~~~l~~~~p~g~~~~~~l~~~y~~ 151 (182)
T 3can_A 76 ---VPNELILKNIR-RVAEADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIGKGKHAKLGSIYNP 151 (182)
T ss_dssp ---SCSHHHHHHHH-HHHHTTCCEEEEEEECBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECCC---------------
T ss_pred ---CCHHHHHHHHH-HHHhCCCeEEEEEEEECCCCCCHHHHHHHHHHHHhCcCccceEEEecCcccCHHHHHHhCCcCcc
Confidence 24699999995 455678899999999999999999999999999998 86 49999999986322
Q ss_pred -CcCCCCHHH--HHHHHHHHHhcCCeEEEe
Q 023640 213 -QFRTSSDDK--VSSFQKILRGSYNIRTTV 239 (279)
Q Consensus 213 -~~~~~~~e~--l~~~~~~l~~~~gi~v~v 239 (279)
++++++.++ ++++.+.++ ++|+.+.+
T Consensus 152 ~~~~~~~~e~~~l~~~~~~~~-~~g~~~~i 180 (182)
T 3can_A 152 KGYKMQTPSEEVQQQCIQILT-DYGLKATI 180 (182)
T ss_dssp ---CCBCCCHHHHHHHHHHHH-HTTCCEEE
T ss_pred cCCCCCCHHHHHHHHHHHHHH-HcCCceEe
Confidence 234667777 999999999 88988766
No 7
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=99.86 E-value=4.2e-20 Score=170.19 Aligned_cols=190 Identities=15% Similarity=0.165 Sum_probs=138.8
Q ss_pred EEEEeccCCcCccCccccCCCCC--CccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHH-HHHHHHHHHhCCCCC
Q 023640 22 TLCISSQVGCKMGCNFCATGTMG--FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYA-ALVEAVRIMTGLPFQ 98 (279)
Q Consensus 22 ~l~i~~~~gCNl~C~yC~~~~~~--~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~-~i~~~i~~~~~~g~~ 98 (279)
.+.+.+|.+||++|.||+.+... ....++.+++.+.+..+....++..|.|+| ||||++++ .+.++++.+++.+ +
T Consensus 116 ~v~l~vT~~Cnl~C~yC~~~~~~~~~~~~ls~eei~~~i~~i~~~~gi~~V~ltG-GEPll~~d~~L~~il~~l~~~~-~ 193 (416)
T 2a5h_A 116 RVLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRNTPQVRDVLLSG-GDALLVSDETLEYIIAKLREIP-H 193 (416)
T ss_dssp EEEEEEESCCSSCCTTCTTTTTTTSSSSBCCHHHHHHHHHHHHTCTTCCEEEEEE-SCTTSSCHHHHHHHHHHHHTST-T
T ss_pred EEEEecCCCccccCcCCCCcccCCCccCCCCHHHHHHHHHHHHhcCCCcEEEEEC-CCCCCCCHHHHHHHHHHHHhcC-C
Confidence 45555679999999999986532 224688999988887766545788999999 99999865 5889999999873 0
Q ss_pred CCCCeEEEEcCCc--h-----hh-hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEE
Q 023640 99 VSPKRITVSTVGI--V-----HA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 170 (279)
Q Consensus 99 ~~~~~v~i~TNG~--~-----~~-~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~ 170 (279)
...+.+.|||. + .. .+.+.+. ..+.||+|+..+ +.+ . +.+++++ +.+++.|..+.
T Consensus 194 --v~~i~i~Tng~~~~p~~it~e~l~~L~~~---~~v~Isl~~~~~---~ei-------~-~~v~~ai-~~L~~aGi~v~ 256 (416)
T 2a5h_A 194 --VEIVRIGSRTPVVLPQRITPELVNMLKKY---HPVWLNTHFNHP---NEI-------T-EESTRAC-QLLADAGVPLG 256 (416)
T ss_dssp --CCEEEEECSHHHHCGGGCCHHHHHHHGGG---CSEEEEECCCSG---GGC-------C-HHHHHHH-HHHHHTTCCEE
T ss_pred --ccEEEEEecccccccccCCHHHHHHHHhc---CcEEEEEecCCH---HHH-------h-HHHHHHH-HHHHHcCCEEE
Confidence 13799999992 1 11 2223232 357889987655 222 2 7899999 45667899999
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHH
Q 023640 171 IEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 230 (279)
Q Consensus 171 i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~ 230 (279)
+++++++|+||+.+++.++++++.++++....+.+.|.+++..+...+.++..++.+.+.
T Consensus 257 i~~vll~GvNd~~e~l~~l~~~l~~lgv~~~~i~~~~~~~g~~~~~~~~~~~~eil~~l~ 316 (416)
T 2a5h_A 257 NQSVLLRGVNDCVHVMKELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGLR 316 (416)
T ss_dssp EEEECCTTTTCSHHHHHHHHHHHHHTTEEEEEEECCCCBTTCGGGCCCHHHHHHHHHTTB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHcCCceEEEeecCCCCCcccccCCcccHHHHHHHHH
Confidence 999999999999999999999999999875555555544444444456666666666665
No 8
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=99.83 E-value=5.3e-19 Score=159.08 Aligned_cols=191 Identities=15% Similarity=0.186 Sum_probs=145.0
Q ss_pred EeccCCcCccCccccCCCCCC---ccCCCHHHHHHHHHHHhccCCCceEEEecCCc-cccCHHHHHHHHHHHhCCCCCCC
Q 023640 25 ISSQVGCKMGCNFCATGTMGF---KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE-PLNNYAALVEAVRIMTGLPFQVS 100 (279)
Q Consensus 25 i~~~~gCNl~C~yC~~~~~~~---~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GE-Pll~~~~i~~~i~~~~~~g~~~~ 100 (279)
++.+.+||++|.||+.+.... ...++++++++.+.+... .++..|.|+| || |+++++.+.++++.+++.+
T Consensus 57 i~~t~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~i~~~~~-~g~~~i~~~g-Ge~p~~~~~~~~~li~~i~~~~---- 130 (348)
T 3iix_A 57 IEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQ-FGAKTIVLQS-GEDPYXMPDVISDIVKEIKKMG---- 130 (348)
T ss_dssp EEEECCCSCCCTTCTTCTTCCSSCCCBCCHHHHHHHHHHHHH-TTCSEEEEEE-SCCGGGTTHHHHHHHHHHHTTS----
T ss_pred eEecCCcCCcCccCCCCCCCCCcCceeCCHHHHHHHHHHHHH-CCCCEEEEEe-CCCCCccHHHHHHHHHHHHhcC----
Confidence 566899999999998643221 224799999999988765 4789999999 99 9998789999999999875
Q ss_pred CCeEEEEcCCchh-h-hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCC
Q 023640 101 PKRITVSTVGIVH-A-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDG 178 (279)
Q Consensus 101 ~~~v~i~TNG~~~-~-~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g 178 (279)
..+.+ |+|.+. + ...+.+.+ ...+.+++++.+++.++.+.+. .+++.+++++ +.+++.|.. +.+.++.|
T Consensus 131 -~~i~~-s~g~l~~e~l~~L~~ag-~~~v~i~let~~~~~~~~i~~~---~~~~~~~~~i-~~~~~~Gi~--v~~~~i~G 201 (348)
T 3iix_A 131 -VAVTL-SLGEWPREYYEKWKEAG-ADRYLLRHETANPVLHRKLRPD---TSFENRLNCL-LTLKELGYE--TGAGSMVG 201 (348)
T ss_dssp -CEEEE-ECCCCCHHHHHHHHHHT-CCEEECCCBCSCHHHHHHHSTT---SCHHHHHHHH-HHHHHTTCE--EEECBEES
T ss_pred -ceEEE-ecCCCCHHHHHHHHHhC-CCEEeeeeeeCCHHHHHHhCCC---cCHHHHHHHH-HHHHHhCCe--eccceEEe
Confidence 56663 455442 2 44555554 3457789999999999999754 4899999999 557778875 44555556
Q ss_pred C-CCcHHHHHHHHHHHhhCCcE-EEEEecCCCC--CCCCcCCCCHHHHHHHHHHHH
Q 023640 179 V-NDEEQHAHQLGKLLETFQVV-VNLIPFNPIG--SVSQFRTSSDDKVSSFQKILR 230 (279)
Q Consensus 179 ~-nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~--~~~~~~~~~~e~l~~~~~~l~ 230 (279)
+ +++.+++.++++++.++++. +.+.+|.|.. +....++++.+++.++...++
T Consensus 202 ~p~et~e~~~~~~~~l~~l~~~~i~i~~~~p~~gt~l~~~~~~~~~e~~~~~a~~R 257 (348)
T 3iix_A 202 LPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTR 257 (348)
T ss_dssp CTTCCHHHHHHHHHHHHHHTCSEECCEECCCCTTSTTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEeeeeeecCCCCCcccCCCCCHHHHHHHHHHHH
Confidence 6 78999999999999999876 7888898873 222345567888777776665
No 9
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=99.76 E-value=1.3e-16 Score=144.84 Aligned_cols=193 Identities=10% Similarity=0.104 Sum_probs=142.0
Q ss_pred EEEEe-ccCCcCccCccccCCCCC-----CccCCCHHHHHHHHHHHhccCCCceEEEecCC-ccc-cCHHHHHHHHHHHh
Q 023640 22 TLCIS-SQVGCKMGCNFCATGTMG-----FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMG-EPL-NNYAALVEAVRIMT 93 (279)
Q Consensus 22 ~l~i~-~~~gCNl~C~yC~~~~~~-----~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~G-EPl-l~~~~i~~~i~~~~ 93 (279)
...++ .+.+||++|.||+.+... ....++++++++.+.+... .++..|.|+|.| ||. +.++.+.++++.++
T Consensus 66 ~~~i~i~t~~C~~~C~yC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~-~g~~~i~~~gg~~~p~~~~~~~l~~ll~~ik 144 (369)
T 1r30_A 66 STLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKA-AGSTRFCMGAAWKNPHERDMPYLEQMVQGVK 144 (369)
T ss_dssp EEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHH-TTCSEEEEEECCSSCCTTTHHHHHHHHHHHH
T ss_pred EEEEEEECCCCcccCccCCCCCcCCCCCcccccCCHHHHHHHHHHHHH-cCCcEEEEEeCCCCCCcCCHHHHHHHHHHHH
Confidence 33344 479999999999886421 2345799999999887665 378899998822 465 45788999999999
Q ss_pred CCCCCCCCCeEEEEcCCchhh--hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEE
Q 023640 94 GLPFQVSPKRITVSTVGIVHA--INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 171 (279)
Q Consensus 94 ~~g~~~~~~~v~i~TNG~~~~--~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i 171 (279)
+.| ..++ .|||++.. ++.+.+.+ ...+.+++++ +++.++.+.+ ..+++.++++++ .+++.|.. +
T Consensus 145 ~~g-----~~i~-~t~G~l~~e~l~~L~~aG-vd~v~i~les-~~e~~~~i~~---~~~~~~~l~~i~-~a~~~Gi~--v 210 (369)
T 1r30_A 145 AMG-----LEAC-MTLGTLSESQAQRLANAG-LDYYNHNLDT-SPEFYGNIIT---TRTYQERLDTLE-KVRDAGIK--V 210 (369)
T ss_dssp HTT-----SEEE-EECSSCCHHHHHHHHHHC-CCEEECCCBS-CHHHHHHHCC---SSCHHHHHHHHH-HHHHHHCE--E
T ss_pred HcC-----CeEE-EecCCCCHHHHHHHHHCC-CCEEeecCcC-CHHHHHHhCC---CCCHHHHHHHHH-HHHHcCCe--e
Confidence 887 5666 49997532 44555554 2457789999 8999998864 368999999995 55666765 4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhhCC--c-EEEEEecCCCCCCC---CcCCCCHHHHHHHHHHHH
Q 023640 172 EYIMLDGVNDEEQHAHQLGKLLETFQ--V-VVNLIPFNPIGSVS---QFRTSSDDKVSSFQKILR 230 (279)
Q Consensus 172 ~~vv~~g~nd~~~~l~~l~~~l~~~~--~-~i~l~~~~p~~~~~---~~~~~~~e~l~~~~~~l~ 230 (279)
.+.++.|++++.+++.++++++.+++ + .+.+.++.|.. ++ ...+++.+++.++.+.++
T Consensus 211 ~~~~I~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~l~p~~-gT~l~~~~~~~~~~~~~~~~~~r 274 (369)
T 1r30_A 211 CSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVK-GTPLADNDDVDAFDFIRTIAVAR 274 (369)
T ss_dssp ECCEEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCT-TSTTSSCCCCCHHHHHHHHHHHH
T ss_pred eeeeEeeCCCCHHHHHHHHHHHHhhcCCCCEEEeeeeeecC-CCcCCCCCCCCHHHHHHHHHHHH
Confidence 45667788899999999999999987 4 37777787763 33 335678888888776655
No 10
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=99.75 E-value=7.2e-17 Score=145.45 Aligned_cols=193 Identities=21% Similarity=0.206 Sum_probs=141.0
Q ss_pred EEEEeccCCcCccCccccCCCCC-C-ccCCCHHHHHHHHHHHhccCCCceEEEecCCc-cccC--HHHHHHHHHHHhCC-
Q 023640 22 TLCISSQVGCKMGCNFCATGTMG-F-KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE-PLNN--YAALVEAVRIMTGL- 95 (279)
Q Consensus 22 ~l~i~~~~gCNl~C~yC~~~~~~-~-~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GE-Pll~--~~~i~~~i~~~~~~- 95 (279)
...+..+.+||++|.||...... . ...++++++++.+.+... .|+..|.|+| || |+.+ .+.+.++++.+++.
T Consensus 62 ~~~i~~t~~C~~~C~fC~~~~~~~~~~~~ls~eei~~~~~~~~~-~G~~~i~l~g-Ge~p~~~~~~~~~~~l~~~ik~~~ 139 (350)
T 3t7v_A 62 NCFIYFSTYCKNQCSFCYYNCRNEINRYRLTMEEIKETCKTLKG-AGFHMVDLTM-GEDPYYYEDPNRFVELVQIVKEEL 139 (350)
T ss_dssp EEEEEEECCCCCCCTTCTTCTTSCCCCCBCCHHHHHHHHHHHTT-SCCSEEEEEE-CCCHHHHHSTHHHHHHHHHHHHHH
T ss_pred EEeeecCCCcCCCCCcCCCcCcCCCCceeCCHHHHHHHHHHHHH-CCCCEEEEee-CCCCccccCHHHHHHHHHHHHhhc
Confidence 34456679999999999874322 1 224799999999998765 4789999999 99 9874 57889999999865
Q ss_pred CCCCCCCeEEEEcCCchh-h-hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEE
Q 023640 96 PFQVSPKRITVSTVGIVH-A-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 173 (279)
Q Consensus 96 g~~~~~~~v~i~TNG~~~-~-~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~ 173 (279)
+ +.+.++ .|... + +..+++.+ ...+.+++++.+++.++.+.+ ..+++..++++ +.+++.|.++. .
T Consensus 140 ~-----i~i~~s-~g~~~~e~l~~L~~aG-~~~i~i~lEt~~~~~~~~i~~---~~~~~~~l~~i-~~a~~~Gi~v~--~ 206 (350)
T 3t7v_A 140 G-----LPIMIS-PGLMDNATLLKAREKG-ANFLALYQETYDTELYRKLRV---GQSFDGRVNAR-RFAKQQGYCVE--D 206 (350)
T ss_dssp C-----SCEEEE-CSSCCHHHHHHHHHTT-EEEEECCCBCSCHHHHHHHST---TCCHHHHHHHH-HHHHHHTCEEE--E
T ss_pred C-----ceEEEe-CCCCCHHHHHHHHHcC-CCEEEEeeecCCHHHHHHhCC---CCCHHHHHHHH-HHHHHcCCeEc--c
Confidence 5 456543 45432 2 45566654 233668999999999999975 36899999999 56778888754 4
Q ss_pred EEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCC---cCCCCHHHHHHHHHHHH
Q 023640 174 IMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQ---FRTSSDDKVSSFQKILR 230 (279)
Q Consensus 174 vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~---~~~~~~e~l~~~~~~l~ 230 (279)
.++-|++++.+++.+.++++.++++. +.+.+|.|. +++. .++++.+++.+....++
T Consensus 207 ~~i~Glget~e~~~~~l~~l~~l~~~~v~~~~f~p~-~gT~l~~~~~~~~~e~l~~ia~~R 266 (350)
T 3t7v_A 207 GILTGVGNDIESTILSLRGMSTNDPDMVRVMTFLPQ-EGTPLEGFRDKSNLSELKIISVLR 266 (350)
T ss_dssp EEEESSSCCHHHHHHHHHHHHHTCCSEEEEEECCCC-TTSTTTTCCCCCCCCHHHHHHHHH
T ss_pred ceEeecCCCHHHHHHHHHHHHhCCCCEEEecceeeC-CCCcCccCCCCChHHHHHHHHHHH
Confidence 55557789999999999999999886 888999997 3333 33455555555554444
No 11
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=99.65 E-value=1.1e-14 Score=128.81 Aligned_cols=178 Identities=15% Similarity=0.197 Sum_probs=117.6
Q ss_pred ceEEEEeccCCcCccCccccCCCC-CCccCCCHHHHHHHHHHHhccCCCceEEEecCCccccC------HHHHHHHHHHH
Q 023640 20 RSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN------YAALVEAVRIM 92 (279)
Q Consensus 20 ~~~l~i~~~~gCNl~C~yC~~~~~-~~~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~------~~~i~~~i~~~ 92 (279)
+..+++.++.|||++|.||..+.. +..+.++++++++++..+... |++.|.|+| ++++.. .+.+.++++.+
T Consensus 3 ~~~~~v~is~GC~~~C~fC~~~~~~g~~r~r~~e~i~~ei~~l~~~-G~~ei~l~g-~~~~~yG~~~~~~~~l~~Ll~~l 80 (304)
T 2qgq_A 3 RPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKE-GKKEIILVA-QDTTSYGIDLYRKQALPDLLRRL 80 (304)
T ss_dssp CSEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHHT-TCCEEEEEC-TTGGGTTHHHHSSCCHHHHHHHH
T ss_pred CEEEEEEECCCCCCcCccCCccccCCCceeeCHHHHHHHHHHHHHC-CCcEEEEEe-EcccccCCCCCcHHHHHHHHHHH
Confidence 457788888999999999987543 234678999999999987653 788999999 776653 24588999999
Q ss_pred hCC-CCCCCCCeEEE-EcCCchhh---hHHHhccCC-CceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHh-h
Q 023640 93 TGL-PFQVSPKRITV-STVGIVHA---INKFHSDLP-GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN-S 165 (279)
Q Consensus 93 ~~~-g~~~~~~~v~i-~TNG~~~~---~~~l~~~~~-~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~-~ 165 (279)
++. |+ ..+.+ +||+.... ++.+++... ...+.+++++.+++..+.+.+ ..+.+.++++++.+.+. .
T Consensus 81 ~~~~gi----~~ir~~~~~p~~l~~e~l~~l~~~g~~~~~l~i~lqs~s~~vl~~m~r---~~t~e~~~~~i~~l~~~~~ 153 (304)
T 2qgq_A 81 NSLNGE----FWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGR---TKSSEELKKMLSSIRERFP 153 (304)
T ss_dssp HTSSSS----CEEEECCCCGGGCCHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHTTC---CSCHHHHHHHHHHHHHHCT
T ss_pred HhcCCC----cEEEEeeeecccCCHHHHHHHHhCCCCccEEEEecccCCHHHHHHhCC---CCCHHHHHHHHHHHHhhCC
Confidence 886 42 24555 46764322 334444321 235778999999999988743 47899999999554332 4
Q ss_pred CCeEEEEEEEeCCC-CCcHHHHHHHHHHHhhCCcE-EEEEecCCC
Q 023640 166 QQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQVV-VNLIPFNPI 208 (279)
Q Consensus 166 ~~~v~i~~vv~~g~-nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~ 208 (279)
+..+ .+.++-|+ +++.+++.+.++++.++++. +.+.+|.|.
T Consensus 154 gi~i--~~~~IvG~PgEt~ed~~~t~~~l~~l~~~~v~~~~~~p~ 196 (304)
T 2qgq_A 154 DAVL--RTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDE 196 (304)
T ss_dssp TCEE--EEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECCC-
T ss_pred CCEE--EEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeeCC
Confidence 5544 44444454 67889999999999999875 888899886
No 12
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=99.48 E-value=5.2e-12 Score=117.59 Aligned_cols=207 Identities=13% Similarity=0.172 Sum_probs=139.2
Q ss_pred CCceEEEEeccCCcCccCccccCCCCCC-c---cCCCHHHHHHHHHHHhcc---CCCceEEEecCCcccc-CHHHHHHHH
Q 023640 18 GPRSTLCISSQVGCKMGCNFCATGTMGF-K---SNLSSGEIVEQLVHASRL---SNIRNVVFMGMGEPLN-NYAALVEAV 89 (279)
Q Consensus 18 ~~~~~l~i~~~~gCNl~C~yC~~~~~~~-~---~~~~~~ei~~~i~~~~~~---~~~~~I~fsG~GEPll-~~~~i~~~i 89 (279)
.....+++.. .+|+.+|.||....... . .....+.+.+++...... .++..|.|.| |+|++ ..+.+.+++
T Consensus 50 ~~~~~lYihI-pfC~~~C~yC~~~~~~~~~~~~~~~~~~~l~~Ei~~~~~~~~~~~i~~i~fgG-Gtpt~l~~~~l~~ll 127 (457)
T 1olt_A 50 ERPLSLYVHI-PFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGG-GTPTYLNKAQISRLM 127 (457)
T ss_dssp TSCEEEEEEE-CEESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEE-SCGGGSCHHHHHHHH
T ss_pred CCceEEEEEc-CCCCCCCCCCCCceeccCCcchHHHHHHHHHHHHHHHHHhcCCCceEEEEEeC-CCcccCCHHHHHHHH
Confidence 3356777765 46999999998753211 1 112356677777654432 2467899999 99996 567899999
Q ss_pred HHHhCCCCCC-CCCeEEEEcCCchhh---hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhh
Q 023640 90 RIMTGLPFQV-SPKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 165 (279)
Q Consensus 90 ~~~~~~g~~~-~~~~v~i~TNG~~~~---~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~ 165 (279)
+.+++. +++ ....+++.||....+ ++.+.+.+ ...+.+++++.+++..+.+.+ ..+++.+++++ +.+++.
T Consensus 128 ~~i~~~-~~~~~~~eitie~~p~~l~~e~l~~L~~~G-~~rislGvQS~~~~~l~~i~R---~~~~~~~~~ai-~~~r~~ 201 (457)
T 1olt_A 128 KLLREN-FQFNADAEISIEVDPREIELDVLDHLRAEG-FNRLSMGVQDFNKEVQRLVNR---EQDEEFIFALL-NHAREI 201 (457)
T ss_dssp HHHHHH-SCEEEEEEEEEEECSSSCCTHHHHHHHHTT-CCEEEEEEECCCHHHHHHHTC---CCCHHHHHHHH-HHHHHT
T ss_pred HHHHHh-CCCCCCcEEEEEEccCcCCHHHHHHHHHcC-CCEEEEeeccCCHHHHHHhCC---CCCHHHHHHHH-HHHHHc
Confidence 988873 111 014788999985432 34455544 356779999999999998854 46899999999 556777
Q ss_pred CCe-EEEEEEE-eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCC--------CcCCCCHHH----HHHHHHHHH
Q 023640 166 QQK-IFIEYIM-LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVS--------QFRTSSDDK----VSSFQKILR 230 (279)
Q Consensus 166 ~~~-v~i~~vv-~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~--------~~~~~~~e~----l~~~~~~l~ 230 (279)
|.. +.+..++ +|+ ++.+++.+.++++.++++. +.+.++.+.. ++ ....++.++ ++.+.+.+.
T Consensus 202 G~~~v~~dlI~GlPg--et~e~~~~tl~~~~~l~~~~i~~y~l~~~p-~t~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~ 278 (457)
T 1olt_A 202 GFTSTNIDLIYGLPK--QTPESFAFTLKRVAELNPDRLSVFNYAHLP-TIFAAQRKIKDADLPSPQQKLDILQETIAFLT 278 (457)
T ss_dssp TCCSCEEEEEESCTT--CCHHHHHHHHHHHHHHCCSEEEEEECCCCT-TTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEcCCCC--CCHHHHHHHHHHHHhcCcCEEEeecCcCCc-CchhHhhccccCCCcCHHHHHHHHHHHHHHHH
Confidence 876 7766655 454 6789999999999999875 8888777542 21 122345443 444455666
Q ss_pred hcCCeE
Q 023640 231 GSYNIR 236 (279)
Q Consensus 231 ~~~gi~ 236 (279)
..|+.
T Consensus 279 -~~Gy~ 283 (457)
T 1olt_A 279 -QSGYQ 283 (457)
T ss_dssp -HTTCE
T ss_pred -HCCCe
Confidence 56764
No 13
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A*
Probab=98.65 E-value=3.4e-07 Score=82.02 Aligned_cols=158 Identities=14% Similarity=0.154 Sum_probs=104.5
Q ss_pred EeccCCcCccCccccCC-CCC----CccCCCHHHHHHHHHHH-hc-cCCCceEEEecCCccccCHH----HHHHHHHHHh
Q 023640 25 ISSQVGCKMGCNFCATG-TMG----FKSNLSSGEIVEQLVHA-SR-LSNIRNVVFMGMGEPLNNYA----ALVEAVRIMT 93 (279)
Q Consensus 25 i~~~~gCNl~C~yC~~~-~~~----~~~~~~~~ei~~~i~~~-~~-~~~~~~I~fsG~GEPll~~~----~i~~~i~~~~ 93 (279)
++...||.+.|.|||.. ..+ ..-..+.+++++.+.+. .+ .+....|.++++.||+. .+ .+.++++.+.
T Consensus 111 ln~y~GC~~~C~YCYl~~~~~~~~~I~v~vN~~eiL~~l~~~l~~~~~~~~~i~~g~~TDpyp-~E~~~~ltr~~le~l~ 189 (368)
T 4fhd_A 111 IPLATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINERAPEITRFEAACTSDIVG-IDHLTHSLKKAIEFIG 189 (368)
T ss_dssp CCSEEBCSCCCTTCTHHHHTTTCCSEEEECCHHHHHHHHHHHHHHHTTSCEEEESCSSBCHHH-HHTTTCHHHHHHHHHH
T ss_pred eCCccCCCCCCceEeccccCCCCCeEEEecCHHHHHHHHHHHHhhcCCCceEEEEEcCCCcch-hhHHHhHHHHHHHHHH
Confidence 45678999999999872 111 12356788998887653 22 22334677888889973 34 3567777777
Q ss_pred CCCCCCCCCeEEEEcCCchhhhHHHhccC--CCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEE
Q 023640 94 GLPFQVSPKRITVSTVGIVHAINKFHSDL--PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 171 (279)
Q Consensus 94 ~~g~~~~~~~v~i~TNG~~~~~~~l~~~~--~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i 171 (279)
+.+ ...+.+.|-+.+.+ .+.+.. ..+.+.+|+.+ +++.+.+-+. ..+.+.=++++++ +.++|.++.+
T Consensus 190 ~~~----~~~v~i~TKs~lid--~L~~l~~~~~v~V~~Sitt--~~l~r~~EP~--aps~~~RL~Ai~~-l~~aGipv~v 258 (368)
T 4fhd_A 190 ATD----YGRLRFVTKYEHVD--HLLDARHNGKTRFRFSINS--RYVINHFEPG--TSSFDGRLAAARK-VAGAGYKLGF 258 (368)
T ss_dssp HCS----SEEEEEEESCCCCG--GGTTCCCTTCEEEEEEECC--HHHHHHHCTT--SCCHHHHHHHHHH-HHHTTCEEEE
T ss_pred hCC----CceEEEEeCCcCHH--HHHhcCcCCceEEEEEEcC--HHHHHHcCCC--CCCHHHHHHHHHH-HHHCCCeEEE
Confidence 763 14799999997643 233321 24566788864 6777777554 3578889999954 6788998876
Q ss_pred E-EEEeCCCCCcHHHHHHHHHHHhh
Q 023640 172 E-YIMLDGVNDEEQHAHQLGKLLET 195 (279)
Q Consensus 172 ~-~vv~~g~nd~~~~l~~l~~~l~~ 195 (279)
. ..++|+ .+..++..++++.+.+
T Consensus 259 ~iaPIiP~-~~~~e~y~~lle~l~~ 282 (368)
T 4fhd_A 259 VVAPIYRH-EGWERGYFELFQELAR 282 (368)
T ss_dssp EEEEECCC-TTHHHHHHHHHHHHHH
T ss_pred EEeCcCCC-CCCHHHHHHHHHHHHH
Confidence 5 456787 5566677777765543
No 14
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=95.75 E-value=0.61 Score=40.19 Aligned_cols=178 Identities=8% Similarity=-0.018 Sum_probs=101.4
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecCC-----ccccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhhhHHHhc
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGMG-----EPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHS 120 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~G-----EPll~~~~i~~~i~~~~~~-g~~~~~~~v~i~TNG~~~~~~~l~~ 120 (279)
..++.++.++.+..+.+ .|++.|-+.+ + +|.+. + ..++++.+++. + ..+...+- ....++...+
T Consensus 22 ~~~~~e~k~~i~~~L~~-~Gv~~IE~g~-~~~~~~~p~~~-d-~~~~~~~~~~~~~-----~~~~~l~~-~~~~i~~a~~ 91 (298)
T 2cw6_A 22 NIVSTPVKIKLIDMLSE-AGLSVIETTS-FVSPKWVPQMG-D-HTEVLKGIQKFPG-----INYPVLTP-NLKGFEAAVA 91 (298)
T ss_dssp SCCCHHHHHHHHHHHHH-TTCSEECCEE-CCCTTTCGGGT-T-HHHHHHHSCCCTT-----CBCCEECC-SHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-cCcCEEEECC-CcCcccccccC-C-HHHHHHHHhhCCC-----CEEEEEcC-CHHhHHHHHH
Confidence 45788888888877665 4788877766 5 68875 4 35677777664 3 23333321 1223445555
Q ss_pred cCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCC----CCCcHHHHHHHHHHHhhC
Q 023640 121 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDG----VNDEEQHAHQLGKLLETF 196 (279)
Q Consensus 121 ~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g----~nd~~~~l~~l~~~l~~~ 196 (279)
.+ ...+.|.+...+...++.+.. .....++.+.+.+ +++++.|..+.+.....=+ -..+.+.+.++++.+.+.
T Consensus 92 ag-~~~v~i~~~~sd~~~~~~~~~-~~~e~l~~~~~~i-~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (298)
T 2cw6_A 92 AG-AKEVVIFGAASELFTKKNINC-SIEESFQRFDAIL-KAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSM 168 (298)
T ss_dssp TT-CSEEEEEEESCHHHHHHHHSC-CHHHHHHHHHHHH-HHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHHHHHHHHHT
T ss_pred CC-CCEEEEEecCCHHHHHHHhCC-CHHHHHHHHHHHH-HHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHc
Confidence 43 233556554433333334421 1223455666666 5667788887765543211 012578899999999999
Q ss_pred CcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcC-C--eEEEecccccc
Q 023640 197 QVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY-N--IRTTVRKQMGQ 245 (279)
Q Consensus 197 ~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~-g--i~v~vr~~~g~ 245 (279)
|+. +.+-.- . ...+++++.++.+.+++.. + +.+......|.
T Consensus 169 Ga~~i~l~DT--~------G~~~P~~~~~lv~~l~~~~~~~~i~~H~Hn~~Gl 213 (298)
T 2cw6_A 169 GCYEISLGDT--I------GVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQ 213 (298)
T ss_dssp TCSEEEEEET--T------SCCCHHHHHHHHHHHHHHSCGGGEEEEEBCTTSC
T ss_pred CCCEEEecCC--C------CCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCch
Confidence 986 555421 1 1246777777777776444 2 33444455554
No 15
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=92.82 E-value=4.1 Score=34.76 Aligned_cols=179 Identities=12% Similarity=0.029 Sum_probs=97.0
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecC--Cc--cccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhhhHHHhcc
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGM--GE--PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 121 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~--GE--Pll~~~~i~~~i~~~~~~-g~~~~~~~v~i~TNG~~~~~~~l~~~ 121 (279)
..++.++.++.+..+.+ .|+..|-+++. ++ |.+. ...++++.+++. + ..+.+.+ .....+++..+.
T Consensus 21 ~~~~~e~k~~i~~~L~~-~Gv~~IE~g~~~~~~~~p~~~--~~~e~~~~i~~~~~-----~~v~~l~-~n~~~i~~a~~~ 91 (295)
T 1ydn_A 21 RFVPTADKIALINRLSD-CGYARIEATSFVSPKWVPQLA--DSREVMAGIRRADG-----VRYSVLV-PNMKGYEAAAAA 91 (295)
T ss_dssp SCCCHHHHHHHHHHHTT-TTCSEEEEEECSCTTTCGGGT--THHHHHHHSCCCSS-----SEEEEEC-SSHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHH-cCcCEEEEccCcCcccccccc--CHHHHHHHHHhCCC-----CEEEEEe-CCHHHHHHHHHC
Confidence 34788888888887765 47777766553 33 4453 235778887665 3 4554433 113334455554
Q ss_pred CCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCC----CCCcHHHHHHHHHHHhhCC
Q 023640 122 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDG----VNDEEQHAHQLGKLLETFQ 197 (279)
Q Consensus 122 ~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g----~nd~~~~l~~l~~~l~~~~ 197 (279)
+ ...+.|++.+ ++...+.-........++.+.+.+ +++++.|..+......+-+ ...+++.+.++++.+.+.|
T Consensus 92 G-~~~V~i~~~~-S~~h~~~~~~~~~~e~~~~~~~~v-~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G 168 (295)
T 1ydn_A 92 H-ADEIAVFISA-SEGFSKANINCTIAESIERLSPVI-GAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLG 168 (295)
T ss_dssp T-CSEEEEEEES-CHHHHHHHTSSCHHHHHHHHHHHH-HHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHT
T ss_pred C-CCEEEEEEec-CHHHHHHHcCCCHHHHHHHHHHHH-HHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcC
Confidence 3 2345565544 333222211111112234444445 5667788887644332211 1236788999999888999
Q ss_pred cE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCC-eEEEec--ccccc
Q 023640 198 VV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN-IRTTVR--KQMGQ 245 (279)
Q Consensus 198 ~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g-i~v~vr--~~~g~ 245 (279)
+. +.+- ...| . .++++..++.+.+++... +++.+. ...|.
T Consensus 169 ~d~i~l~--Dt~G----~--~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gl 212 (295)
T 1ydn_A 169 CHEVSLG--DTIG----R--GTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGR 212 (295)
T ss_dssp CSEEEEE--ETTS----C--CCHHHHHHHHHHHHTTSCGGGEEEEEBCTTSC
T ss_pred CCEEEec--CCCC----C--cCHHHHHHHHHHHHHhCCCCeEEEEECCCcch
Confidence 86 5554 2332 1 457777777777763444 444333 35544
No 16
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=77.53 E-value=32 Score=29.20 Aligned_cols=177 Identities=10% Similarity=0.082 Sum_probs=89.0
Q ss_pred ccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhccC--C
Q 023640 46 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDL--P 123 (279)
Q Consensus 46 ~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~~~--~ 123 (279)
...++.++.++.+..+.+ .|++.|-... |-..+... +.++.+.+.. +...+...+-+...+++...+.. -
T Consensus 21 ~~~~~~~~K~~i~~~L~~-~Gv~~IE~g~---p~~~~~d~-e~v~~i~~~~---~~~~i~~l~~~~~~di~~a~~~~~~a 92 (293)
T 3ewb_X 21 GVNFDVKEKIQIALQLEK-LGIDVIEAGF---PISSPGDF-ECVKAIAKAI---KHCSVTGLARCVEGDIDRAEEALKDA 92 (293)
T ss_dssp --CCCHHHHHHHHHHHHH-HTCSEEEEEC---GGGCHHHH-HHHHHHHHHC---CSSEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHH-cCCCEEEEeC---CCCCccHH-HHHHHHHHhc---CCCEEEEEecCCHHHHHHHHHHHhhc
Confidence 456888988888887665 3788887654 66665433 3344443321 11344433322222233322211 0
Q ss_pred Cce-EEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHH---HHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE
Q 023640 124 GLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK---EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 199 (279)
Q Consensus 124 ~~~-i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~---~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~ 199 (279)
..+ +.+.+ +.++...+.-. +.+.++.++.++ +++++.|..+.+...- ....+++.+.++++.+.+.|+.
T Consensus 93 g~~~v~i~~-~~Sd~~~~~nl----~~s~~e~l~~~~~~v~~a~~~g~~v~~~~~d--~~~~~~~~~~~~~~~~~~~G~~ 165 (293)
T 3ewb_X 93 VSPQIHIFL-ATSDVHMEYKL----KMSRAEVLASIKHHISYARQKFDVVQFSPED--ATRSDRAFLIEAVQTAIDAGAT 165 (293)
T ss_dssp SSEEEEEEE-ECSHHHHHHTT----CCCHHHHHHHHHHHHHHHHTTCSCEEEEEET--GGGSCHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEEe-cCcHHHHHHHh----CCCHHHHHHHHHHHHHHHHhCCCEEEEEecc--CCCCCHHHHHHHHHHHHHcCCC
Confidence 123 33333 22333222211 244555544443 4456667766654331 1123567889999999999986
Q ss_pred -EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCC------eEEEecccccc
Q 023640 200 -VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN------IRTTVRKQMGQ 245 (279)
Q Consensus 200 -i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g------i~v~vr~~~g~ 245 (279)
+.+-. . ....+++++.++.+.+++..+ +.+......|.
T Consensus 166 ~i~l~D--T------~G~~~P~~v~~lv~~l~~~~~~~~~~~l~~H~Hnd~Gl 210 (293)
T 3ewb_X 166 VINIPD--T------VGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGM 210 (293)
T ss_dssp EEEEEC--S------SSCCCHHHHHHHHHHHHHHCTTGGGSEEEEECBCTTSC
T ss_pred EEEecC--C------CCCCCHHHHHHHHHHHHHhcCCccCceEEEEeCCCcCh
Confidence 55431 1 122466777777776663433 33444445544
No 17
>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha}
Probab=75.28 E-value=36 Score=28.70 Aligned_cols=160 Identities=15% Similarity=0.035 Sum_probs=90.6
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEec---CCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhH-H--Hhc
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMG---MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAIN-K--FHS 120 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG---~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~-~--l~~ 120 (279)
-.+|++|+.+...+..+. |...|.+.- .|.|++.++.+.++++.+++.- +.+.+.++|-|.....+ + +..
T Consensus 25 lPvTpeEia~~A~~~~~A-GAaivHlHvRd~~G~~s~d~~~~~e~~~~IR~~~---pd~ii~~Ttg~~~~~~e~R~~~~~ 100 (275)
T 3no5_A 25 VPITVSEQVESTQAAFEA-GATLVHLHVRNDDETPTSNPDRFALVLEGIRKHA---PGMITQVSTGGRSGAGNERGAMLS 100 (275)
T ss_dssp SCCSHHHHHHHHHHHHHH-TCCEEEECEECTTSCEECCHHHHHHHHHHHHHHS---TTCEEEECCCCCTTCCGGGGTTGG
T ss_pred CCCCHHHHHHHHHHHHHc-cCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHhC---CCeEEEeCCCCCCCCHHHHhhHhh
Confidence 358999999999987653 555455442 2889999988999999998751 22678888876432211 1 111
Q ss_pred cCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhC----
Q 023640 121 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---- 196 (279)
Q Consensus 121 ~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~---- 196 (279)
..+ ++ .|++..+-...+.+.. .+++.+-+.+ +.+++.|++..+.. . +..++..+..++++-
T Consensus 101 ~~P--e~-aSl~~gs~Nf~~~v~~----N~~~~~~~~~-~~~~e~Gi~pE~e~--f-----d~g~l~~~~~l~~~Gl~~~ 165 (275)
T 3no5_A 101 LRP--DM-ASLATGSVNFPTRVYD----NPPELVDWLA-AEMKTYGIKPEVEA--F-----DLSMIFQAAAMQAAGAIVG 165 (275)
T ss_dssp GCC--SE-EEEECSCEECSSSEEC----CCHHHHHHHH-HHHHHTTCEEEEEE--S-----STHHHHHHHHHHHHTSSCS
T ss_pred cCC--CE-EEecCccccccccccc----CCHHHHHHHH-HHHHHcCCeeEEEE--E-----cHHHHHHHHHHHHCCCCCC
Confidence 112 22 2443222221122211 2455555555 55667787776553 2 345677776666551
Q ss_pred CcEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHH
Q 023640 197 QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 230 (279)
Q Consensus 197 ~~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~ 230 (279)
...++++-=.+. . .+.+.+.+..+.+.++
T Consensus 166 p~~~~~vlGv~~----g-~~~~~~~l~~~~~~l~ 194 (275)
T 3no5_A 166 PLHIQFVMGIKN----A-MPVDREVLEFYVQTLK 194 (275)
T ss_dssp SCEEEEEECCTT----S-CCCCHHHHHHHHHHHH
T ss_pred CeeEEEEeCCCC----C-CCCCHHHHHHHHHHHH
Confidence 123444321221 2 2467888888888774
No 18
>3p14_A L-rhamnose isomerase; TIM barrel; 2.51A {Bacillus halodurans} SCOP: c.1.15.2 PDB: 3uu0_A 3uva_A 3uxi_A
Probab=74.76 E-value=13 Score=33.51 Aligned_cols=127 Identities=15% Similarity=0.158 Sum_probs=80.6
Q ss_pred ccCCCHHHHHHHHHHHhcc-CCCceEEEe------cCCccccC----HHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhh
Q 023640 46 KSNLSSGEIVEQLVHASRL-SNIRNVVFM------GMGEPLNN----YAALVEAVRIMTGLPFQVSPKRITVSTVGIVHA 114 (279)
Q Consensus 46 ~~~~~~~ei~~~i~~~~~~-~~~~~I~fs------G~GEPll~----~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~ 114 (279)
+...+++|+.+.+..+... ++...|.+. | ||+.-. ++.+.++.+.+++.| +.+.+++|-+..
T Consensus 71 G~ar~~~E~~~D~~~~~~l~~~~~~v~LH~~y~~~~-~~~v~~d~~~p~~f~~~~~~a~e~G-----L~l~~n~n~Fsh- 143 (424)
T 3p14_A 71 GKATTPEELRMDLEKALSLIPGKHRVNLHAIYAETD-GKVVERDQLEPRHFEKWVRWAKRHG-----LGLDFNPTLFSH- 143 (424)
T ss_dssp CCCCSHHHHHHHHHHHHTTSSSCCEEEEEGGGCCCT-TCCCCGGGCCGGGGHHHHHHHHHHT-----CEEEEECCCSSS-
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCcceecchhhhccC-CCcCCccccChhhHHHHHHHHHHcC-----CceeeccCCCCC-
Confidence 5678999999999877653 456788888 6 665543 456778888888888 567788887642
Q ss_pred hHHHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHh----hCCeEEEEEEEeCCCC----CcHHHH
Q 023640 115 INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN----SQQKIFIEYIMLDGVN----DEEQHA 186 (279)
Q Consensus 115 ~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~----~~~~v~i~~vv~~g~n----d~~~~l 186 (279)
+++.. .+++-++++++++.. .+..++++ +..++ .|.+-.+.+=+-.|.+ |-....
T Consensus 144 -p~yk~-------G~alTnPD~~VR~~A--------I~h~k~~i-dia~~~G~~LGs~~~~~lW~~DG~kdyp~D~~~~~ 206 (424)
T 3p14_A 144 -EKAKD-------GLTLAHPDQAIRQFW--------IDHCIASR-KIGEYFGKELETPCLTNIWIPDGYKDTPSDRLTPR 206 (424)
T ss_dssp -GGGTT-------SCSTTCSSHHHHHHH--------HHHHHHHH-HHHHHHHHHHSSCEEEEECCCCEESSCCSCSHHHH
T ss_pred -hhhcC-------CccCCCCCHHHHHHH--------HHHHHHHH-HHHHHHHHhcCCCeeEEEeCCCCCcCCCCCHHHHH
Confidence 12111 145567889988864 45666666 45555 5555222222223444 556667
Q ss_pred HHHHHHHhhC
Q 023640 187 HQLGKLLETF 196 (279)
Q Consensus 187 ~~l~~~l~~~ 196 (279)
+.+.+.+.++
T Consensus 207 ~rl~esL~eI 216 (424)
T 3p14_A 207 KRLKESLDQI 216 (424)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777654
No 19
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=74.01 E-value=22 Score=31.30 Aligned_cols=35 Identities=31% Similarity=0.581 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHhcCCeEEEecccccccc--ccccccccccC
Q 023640 218 SDDKVSSFQKILRGSYNIRTTVRKQMGQDI--SGACGQLVVNL 258 (279)
Q Consensus 218 ~~e~l~~~~~~l~~~~gi~v~vr~~~g~~~--~~~cg~~~~~~ 258 (279)
+.+++.-..++|+ ..|+ |. .|.++ ||.||+...+.
T Consensus 248 p~~Ev~va~~ILq-slgl----R~-~g~~~ISCPtCGRt~~dl 284 (366)
T 3noy_A 248 PVVEVETAYEILK-SLGL----RR-RGVEIVACPTCGRIEVDL 284 (366)
T ss_dssp HHHHHHHHHHHHH-HTTS----CC-SSCEEEECCCCTTCCSCH
T ss_pred cHHHHHHHHHHHH-hcCC----Cc-CCCEEEECCCCCCccccH
Confidence 4777888888888 6664 32 35555 68898876654
No 20
>3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A
Probab=71.44 E-value=46 Score=28.20 Aligned_cols=159 Identities=12% Similarity=0.033 Sum_probs=92.3
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEEecC---CccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhh-HHHh--cc
Q 023640 48 NLSSGEIVEQLVHASRLSNIRNVVFMGM---GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAI-NKFH--SD 121 (279)
Q Consensus 48 ~~~~~ei~~~i~~~~~~~~~~~I~fsG~---GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~-~~l~--~~ 121 (279)
.+|++|+.+...+..+. |...|.+.-. |.|++.++.+.++++.+++.. +.+.+.++|.|..... +++. ..
T Consensus 30 PvTpeEia~~A~~~~~A-GAaivHlH~Rd~~G~ps~d~~~~~e~~~~IR~~~---pd~ii~~TTgg~~~~~eeR~~~~~~ 105 (284)
T 3chv_A 30 PITVSEQVESTQEAFEA-GAAIAHCHVRNDDGTPSSDPDRFARLTEGLHTHC---PGMIVQFSTGGRSGAGQARGGMLPL 105 (284)
T ss_dssp CCSHHHHHHHHHHHHHH-TCCEEEECEECTTSCEECCHHHHHHHHHHHHHHS---TTCEEEECCCTTTCCGGGGGTTGGG
T ss_pred CCCHHHHHHHHHHHHHc-CCcEEEeeecCCCCCcCCCHHHHHHHHHHHHHhC---CCeEEEeCCCCCCCCHHHHHHhhhc
Confidence 47999999999987653 5555555422 789999988999999998752 1278999996632111 1211 22
Q ss_pred CCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhC----C
Q 023640 122 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF----Q 197 (279)
Q Consensus 122 ~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~----~ 197 (279)
.+ ++ .|++..+-...+.+.. .+.+.+-+.+ +.+++.|++..+.. . +..++..+..++++- .
T Consensus 106 ~P--e~-aSl~~Gs~Nf~~~v~~----n~~~~~~~~~-~~~~e~Gv~pE~e~--f-----d~g~l~~~~~l~~~Gll~~p 170 (284)
T 3chv_A 106 KP--DM-ASLSVGSNNFPSRVYE----NPPDLVDWLA-AQMRSYRVTPEIEA--F-----DLSHILRAIDMHGRGLLYGK 170 (284)
T ss_dssp CC--SE-EEECCSCEECSSSEEC----CCHHHHHHHH-HHHHHHTCEEEEEE--S-----SHHHHHHHHHHHHTTCSCSS
T ss_pred CC--CE-EEecCcccccCCcccc----CCHHHHHHHH-HHHHHcCCEEEEEE--E-----CHHHHHHHHHHHHcCCCCCC
Confidence 22 32 2454322111122211 2455565655 55667787777653 2 467788877666542 1
Q ss_pred cEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHH
Q 023640 198 VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 230 (279)
Q Consensus 198 ~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~ 230 (279)
..++++--.+. . .+.+.+.+..+.+.+.
T Consensus 171 ~~~~~vlGv~~----g-~~~~~~~L~~~~~~~p 198 (284)
T 3chv_A 171 LYVQFVMGVKN----A-MPADREVFDFYVRMMR 198 (284)
T ss_dssp CEEEEEECCTT----S-CCCCHHHHHHHHHHHH
T ss_pred ceEEEEEecCC----C-CCCCHHHHHHHHHhcc
Confidence 23554422222 2 2467888888877764
No 21
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=68.16 E-value=58 Score=28.04 Aligned_cols=180 Identities=12% Similarity=0.025 Sum_probs=92.6
Q ss_pred ccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhccC--C
Q 023640 46 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDL--P 123 (279)
Q Consensus 46 ~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~~~--~ 123 (279)
...++.++.++.+..+.+. |++.|-..- |..+++.. +.++.+.+.. +...+...+-+....++...+.+ .
T Consensus 22 ~~~~~~~~Kl~ia~~L~~~-Gv~~IE~g~---p~~~~~d~-e~v~~i~~~~---~~~~i~~l~r~~~~~i~~a~~al~~a 93 (325)
T 3eeg_A 22 GCQLNTEEKIIVAKALDEL-GVDVIEAGF---PVSSPGDF-NSVVEITKAV---TRPTICALTRAKEADINIAGEALRFA 93 (325)
T ss_dssp ---CCTTHHHHHHHHHHHH-TCSEEEEEC---TTSCHHHH-HHHHHHHHHC---CSSEEEEECCSCHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHc-CCCEEEEeC---CCCCHhHH-HHHHHHHHhC---CCCEEEEeecCCHHHHHHHHHhhccc
Confidence 3467788888877776543 777776543 66775543 3344444321 12455555433332333222221 0
Q ss_pred Cce-EEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EE
Q 023640 124 GLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VN 201 (279)
Q Consensus 124 ~~~-i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~ 201 (279)
..+ +.+.+. .++...+.-.+......++.+.+.+ +++++.|..+.+..... + ..+++.+.++++.+.+.|+. +.
T Consensus 94 g~~~v~i~~s-~Sd~~~~~~l~~s~~e~l~~~~~~v-~~a~~~g~~v~f~~~d~-~-~~~~~~~~~~~~~~~~~G~~~i~ 169 (325)
T 3eeg_A 94 KRSRIHTGIG-SSDIHIEHKLRSTRENILEMAVAAV-KQAKKVVHEVEFFCEDA-G-RADQAFLARMVEAVIEAGADVVN 169 (325)
T ss_dssp SSEEEEEEEE-CSHHHHC----CCCTTGGGTTHHHH-HHHHTTSSEEEEEEETG-G-GSCHHHHHHHHHHHHHHTCSEEE
T ss_pred CCCEEEEEec-ccHHHHHHHhCCCHHHHHHHHHHHH-HHHHHCCCEEEEEcccc-c-cchHHHHHHHHHHHHhcCCCEEE
Confidence 123 333332 2333222222223345667777777 67778888776544321 1 23577888999988888886 43
Q ss_pred EEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCC----eEEEec--ccccc
Q 023640 202 LIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN----IRTTVR--KQMGQ 245 (279)
Q Consensus 202 l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g----i~v~vr--~~~g~ 245 (279)
+ .. .....+++++.++.+.+++..+ +.+.+. ...|.
T Consensus 170 l---~D-----T~G~~~P~~v~~lv~~l~~~~~~~~~~~i~~H~Hnd~Gl 211 (325)
T 3eeg_A 170 I---PD-----TTGYMLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGL 211 (325)
T ss_dssp C---CB-----SSSCCCHHHHHHHHHHHHHHCSCGGGSEEEECBCCTTSC
T ss_pred e---cC-----ccCCcCHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCH
Confidence 3 21 1122467777777777664444 454443 34443
No 22
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=67.61 E-value=65 Score=28.40 Aligned_cols=172 Identities=13% Similarity=0.163 Sum_probs=91.7
Q ss_pred ccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhccCCCc
Q 023640 46 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 125 (279)
Q Consensus 46 ~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~ 125 (279)
...++.++.++.+..+.+. |++.|-+.+ |-.. +...+.++.+++.+.. ..+....-+....++...+.+ .
T Consensus 19 ~~~~~~~~k~~ia~~L~~~-Gv~~IE~g~---p~~~-~~~~~~~~~i~~~~~~---~~v~~~~r~~~~di~~a~~~g--~ 88 (382)
T 2ztj_A 19 KANFSTQDKVEIAKALDEF-GIEYIEVTT---PVAS-PQSRKDAEVLASLGLK---AKVVTHIQCRLDAAKVAVETG--V 88 (382)
T ss_dssp TCCCCHHHHHHHHHHHHHH-TCSEEEECC---TTSC-HHHHHHHHHHHTSCCS---SEEEEEEESCHHHHHHHHHTT--C
T ss_pred CCCcCHHHHHHHHHHHHHc-CcCEEEEcC---CcCC-HHHHHHHHHHHhcCCC---cEEEEEcccChhhHHHHHHcC--C
Confidence 3468889888888776553 788777744 6676 4456888888887521 233322222333344444443 3
Q ss_pred e-EEEEeCCCCHHHHhhhcCCCCCCCH----HHHHHHHHHHHHhhC--CeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCc
Q 023640 126 N-LAVSLHAPVQDVRCQIMPAARAFPL----EKLMNALKEYQKNSQ--QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 198 (279)
Q Consensus 126 ~-i~iSld~~~~~~~~~i~~~~~~~~~----~~i~~~l~~~~~~~~--~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~ 198 (279)
+ +.+.+. .++.....+ +.+. +.+.+.+ +++++.| ..+.+. +......+.+.+.++++.+.+. +
T Consensus 89 ~~v~i~~~-~s~~~~~~~-----~~s~~e~l~~~~~~v-~~ak~~g~~~~v~~~--~ed~~~~~~~~~~~~~~~~~~~-a 158 (382)
T 2ztj_A 89 QGIDLLFG-TSKYLRAPH-----GRDIPRIIEEAKEVI-AYIREAAPHVEVRFS--AEDTFRSEEQDLLAVYEAVAPY-V 158 (382)
T ss_dssp SEEEEEEC-C-------------CCCHHHHHHHHHHHH-HHHHHHCTTSEEEEE--ETTTTTSCHHHHHHHHHHHGGG-C
T ss_pred CEEEEEec-cCHHHHHHh-----CCCHHHHHHHHHHHH-HHHHHcCCCEEEEEE--EEeCCCCCHHHHHHHHHHHHHh-c
Confidence 3 334332 222222122 1344 4455555 5566778 555544 3334445678889999988888 6
Q ss_pred E-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhc--CCeEEE--ecccccc
Q 023640 199 V-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGS--YNIRTT--VRKQMGQ 245 (279)
Q Consensus 199 ~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~--~gi~v~--vr~~~g~ 245 (279)
. +.+-.-.- ...++++.++.+.+++. .++.+. .....|.
T Consensus 159 ~~i~l~DT~G--------~~~P~~~~~lv~~l~~~~~~~~~i~~H~Hnd~Gl 202 (382)
T 2ztj_A 159 DRVGLADTVG--------VATPRQVYALVREVRRVVGPRVDIEFHGHNDTGC 202 (382)
T ss_dssp SEEEEEETTS--------CCCHHHHHHHHHHHHHHHTTTSEEEEEEBCTTSC
T ss_pred CEEEecCCCC--------CCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCccH
Confidence 5 55532221 13466666666666533 344443 3344443
No 23
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=64.75 E-value=69 Score=27.67 Aligned_cols=181 Identities=12% Similarity=0.034 Sum_probs=88.7
Q ss_pred cCCCHHHHHHHHH-HHhccCCCceEEEecCCccccCH---HHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhhhHHHhcc
Q 023640 47 SNLSSGEIVEQLV-HASRLSNIRNVVFMGMGEPLNNY---AALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 121 (279)
Q Consensus 47 ~~~~~~ei~~~i~-~~~~~~~~~~I~fsG~GEPll~~---~~i~~~i~~~~~~-g~~~~~~~v~i~TNG~~~~~~~l~~~ 121 (279)
..++.++.++.+. .+.+ .|++.|-+.+ |..++ +.+.++.+..... + ++...+...+-+.. .++...+.
T Consensus 36 ~~~~~~~k~~i~~~~L~~-~Gv~~IE~g~---~~~~~~~~~~v~~~~~~~~~~~~--~~~~~i~~l~~~~~-~i~~a~~~ 108 (337)
T 3ble_A 36 VSFSTSEKLNIAKFLLQK-LNVDRVEIAS---ARVSKGELETVQKIMEWAATEQL--TERIEILGFVDGNK-TVDWIKDS 108 (337)
T ss_dssp CCCCHHHHHHHHHHHHHT-TCCSEEEEEE---TTSCTTHHHHHHHHHHHHHHTTC--GGGEEEEEESSTTH-HHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHH-cCCCEEEEeC---CCCChhHHHHHHHHHhhhhhhcc--CCCCeEEEEccchh-hHHHHHHC
Confidence 4588899888888 6654 4888888765 34443 3443333321100 1 11134444443322 34444444
Q ss_pred CCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeC-CCCCcHHHHHHHHHHHhhCCcE-
Q 023640 122 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLD-GVNDEEQHAHQLGKLLETFQVV- 199 (279)
Q Consensus 122 ~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~-g~nd~~~~l~~l~~~l~~~~~~- 199 (279)
+ ...+.+.+...+......+. ......++.+.+.+ +++++.|..+.+...-.+ ....+.+.+.++++.+.+.|+.
T Consensus 109 g-~~~v~i~~~~s~~~~~~~~~-~s~~e~l~~~~~~v-~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~ 185 (337)
T 3ble_A 109 G-AKVLNLLTKGSLHHLEKQLG-KTPKEFFTDVSFVI-EYAIKSGLKINVYLEDWSNGFRNSPDYVKSLVEHLSKEHIER 185 (337)
T ss_dssp T-CCEEEEEEECSHHHHHHHTC-CCHHHHHHHHHHHH-HHHHHTTCEEEEEEETHHHHHHHCHHHHHHHHHHHHTSCCSE
T ss_pred C-CCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHH-HHHHHCCCEEEEEEEECCCCCcCCHHHHHHHHHHHHHcCCCE
Confidence 3 12234433322222233331 11112234444445 455677877665533200 1011357788888888888886
Q ss_pred EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcC-CeEE--Eecccccc
Q 023640 200 VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY-NIRT--TVRKQMGQ 245 (279)
Q Consensus 200 i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~-gi~v--~vr~~~g~ 245 (279)
+.+-.- . ...+++++.++.+.+++.. ++.+ ......|.
T Consensus 186 i~l~DT--~------G~~~P~~v~~lv~~l~~~~p~~~i~~H~Hnd~Gl 226 (337)
T 3ble_A 186 IFLPDT--L------GVLSPEETFQGVDSLIQKYPDIHFEFHGHNDYDL 226 (337)
T ss_dssp EEEECT--T------CCCCHHHHHHHHHHHHHHCTTSCEEEECBCTTSC
T ss_pred EEEecC--C------CCcCHHHHHHHHHHHHHhcCCCeEEEEecCCcch
Confidence 555321 1 1245677777776666444 3443 34444443
No 24
>3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400}
Probab=61.66 E-value=68 Score=27.55 Aligned_cols=60 Identities=15% Similarity=0.156 Sum_probs=42.9
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEE--ec--CCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCc
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVF--MG--MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGI 111 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~f--sG--~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~ 111 (279)
-.+|++|+++...+..+. |...|.+ =. .|.|++.++.+.+++..+++.- ...+.++|-|.
T Consensus 27 lPvTpeEia~~A~~~~~A-GAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~----d~iI~~TTgg~ 90 (311)
T 3e02_A 27 LPITPEEIVKEGVAAAEA-GAAMLHLHARDPLNGRPSQDPDLFMRFLPQLKERT----DAILNITTGGG 90 (311)
T ss_dssp SCCSHHHHHHHHHHHHHH-TCSEEEECEECTTTCCEECCHHHHTTTHHHHHHHC----CCEEEECSSCS
T ss_pred CCCCHHHHHHHHHHHHHc-CCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhC----CcEEEECCCCC
Confidence 358999999999987653 4444444 33 3889999888889999998751 15677777764
No 25
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=61.30 E-value=93 Score=27.96 Aligned_cols=177 Identities=10% Similarity=0.095 Sum_probs=93.5
Q ss_pred ccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC--CchhhhHHHhccCC
Q 023640 46 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV--GIVHAINKFHSDLP 123 (279)
Q Consensus 46 ~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TN--G~~~~~~~l~~~~~ 123 (279)
...+++++-++.+..+.+. |++.|-. |-|-..+. -.+.++.+.+.+. ...+.+- .....++...+.+
T Consensus 55 ~~~~s~eeKl~Ia~~L~~~-Gv~~IEv---G~P~asp~-d~~~~~~i~~~~~-----~~~v~~~~r~~~~di~~A~~aG- 123 (423)
T 3ivs_A 55 NAFFDTEKKIQIAKALDNF-GVDYIEL---TSPVASEQ-SRQDCEAICKLGL-----KCKILTHIRCHMDDARVAVETG- 123 (423)
T ss_dssp TCCCCHHHHHHHHHHHHHH-TCSEEEE---CCTTSCHH-HHHHHHHHHTSCC-----SSEEEEEEESCHHHHHHHHHTT-
T ss_pred CCCcCHHHHHHHHHHHHHc-CCCEEEE---eecccCHH-HHHHHHHHHhcCC-----CCEEEEeeccChhhHHHHHHcC-
Confidence 3468899888888876653 7777665 34777754 3477777777652 2223321 1122233444433
Q ss_pred CceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEE
Q 023640 124 GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNL 202 (279)
Q Consensus 124 ~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l 202 (279)
...+.+.+.+. +.+.+.-........++.+.+.+ +++++.|..+.+... ..+..+++.+.++++.+.+.|+. +.+
T Consensus 124 ~~~V~i~~s~S-d~~~~~~l~~s~~e~l~~~~~~v-~~ak~~G~~V~~~~e--da~r~d~~~~~~v~~~~~~~Ga~~i~l 199 (423)
T 3ivs_A 124 VDGVDVVIGTS-QYLRKYSHGKDMTYIIDSATEVI-NFVKSKGIEVRFSSE--DSFRSDLVDLLSLYKAVDKIGVNRVGI 199 (423)
T ss_dssp CSEEEEEEEC--------------CHHHHHHHHHH-HHHHTTTCEEEEEEE--SGGGSCHHHHHHHHHHHHHHCCSEEEE
T ss_pred CCEEEEEeecc-HHHHHHHcCCCHHHHHHHHHHHH-HHHHHCCCEEEEEEc--cCcCCCHHHHHHHHHHHHHhCCCcccc
Confidence 12344443222 22111111111223356666677 667778877766532 33344677888899988888876 554
Q ss_pred EecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEE--ecccccc
Q 023640 203 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT--VRKQMGQ 245 (279)
Q Consensus 203 ~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~--vr~~~g~ 245 (279)
-.-. ...++.++.++.+.++...++.+. .....|.
T Consensus 200 ~DTv--------G~~~P~~v~~lv~~l~~~~~~~i~~H~Hnd~Gl 236 (423)
T 3ivs_A 200 ADTV--------GCATPRQVYDLIRTLRGVVSCDIECHFHNDTGM 236 (423)
T ss_dssp EETT--------SCCCHHHHHHHHHHHHHHCSSEEEEEEBCTTSC
T ss_pred CCcc--------CcCCHHHHHHHHHHHHhhcCCeEEEEECCCCch
Confidence 3222 123566777776666644455443 3344443
No 26
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A
Probab=57.22 E-value=88 Score=26.42 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=91.1
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEEec---CCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchh-h-hHHH--hc
Q 023640 48 NLSSGEIVEQLVHASRLSNIRNVVFMG---MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH-A-INKF--HS 120 (279)
Q Consensus 48 ~~~~~ei~~~i~~~~~~~~~~~I~fsG---~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~-~-~~~l--~~ 120 (279)
.+|++|+.+...+..+. |...|.+.- .|.|++.++.+.++++.+++.. +.+.+.++|.|... . .+++ ..
T Consensus 30 PvTpeEia~~A~~a~~A-GAaivHlHvRd~~G~ps~d~~~~~e~~~~IR~~~---pd~ii~~TTg~~~~~~~eeR~~~~~ 105 (282)
T 2y7e_A 30 PITPEEQAKEAKACFEA-GARVIHLHIREDDGRPSQRLDRFQEAISAIREVV---PEIIIQISTGGAVGESFDKRLAPLA 105 (282)
T ss_dssp CCSHHHHHHHHHHHHHH-TEEEEEECEECTTSCEECCHHHHHHHHHHHHHHC---TTSEEEECSSCSTTCCHHHHHGGGG
T ss_pred CCCHHHHHHHHHHHHHc-CCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHHC---CCeEEEeCCCCCCCCCHHHHHHHhh
Confidence 47999999999886653 444444432 2889999988999999998752 12789999966422 1 1222 22
Q ss_pred cCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCC---
Q 023640 121 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--- 197 (279)
Q Consensus 121 ~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~--- 197 (279)
..+ ++. |++..+-.....+.. .+++.+-+.+ +.+++.|++..+.. . +..++..+..++++--
T Consensus 106 ~~P--e~a-sl~~gs~Nf~~~v~~----n~~~~~~~~~-~~~~e~Gv~pE~e~--f-----d~g~l~~~~~l~~~Gl~p~ 170 (282)
T 2y7e_A 106 LKP--EMA-TLNAGTLNFGDDIFI----NHPADIIRLA-EAFKQYNVVPEVEV--Y-----ESGMVDAVARLIKKGIITQ 170 (282)
T ss_dssp GCC--SEE-EEECCCEEETTEEEC----CCHHHHHHHH-HHHHHTTCEEEEEE--C-----SHHHHHHHHHHHHTTSCCC
T ss_pred cCC--CEE-Eeccccccccccccc----CCHHHHHHHH-HHHHHcCCeEEEEE--E-----CHHHHHHHHHHHHcCCCCC
Confidence 222 332 232111111112211 3456666666 55667787776653 2 4677888777776521
Q ss_pred --cEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHH
Q 023640 198 --VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 230 (279)
Q Consensus 198 --~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~ 230 (279)
..++++--.+. . .+.+.+.+..+.+.+.
T Consensus 171 ~p~~~~~VlGv~~----g-~~~~~~~L~~~~~~lp 200 (282)
T 2y7e_A 171 NPLHIQFVLGVPG----G-MSGKPKNLMYMMEHLK 200 (282)
T ss_dssp SSCEEEEEECCTT----S-CCCCHHHHHHHHHHHH
T ss_pred CCeEEEEEEecCC----C-CCCCHHHHHHHHHhcc
Confidence 22444322222 2 3467888888877765
No 27
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=55.98 E-value=1e+02 Score=26.73 Aligned_cols=131 Identities=10% Similarity=0.103 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecC-Cc-cccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhh--hHHHhcc
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHA--INKFHSD 121 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~~~i~~~~~~-g~~~~~~~v~i~TNG~~~~--~~~l~~~ 121 (279)
..++.+.+.+.++..... |++.|.+.|. || |+|..++-.++++.+.+. +-+.+ .-+.+.+|.+... ..+.++.
T Consensus 47 g~ID~~~l~~lv~~li~~-Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvp-ViaGvg~~st~eai~la~~A~~ 124 (343)
T 2v9d_A 47 GQLDKPGTAALIDDLIKA-GVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVP-VLIGTGGTNARETIELSQHAQQ 124 (343)
T ss_dssp SSBCHHHHHHHHHHHHHT-TCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSC-EEEECCSSCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHc-CCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCc-EEEecCCCCHHHHHHHHHHHHh
Q ss_pred CCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEE-EEEEeCCCCCcHHHHHHHH-H
Q 023640 122 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI-EYIMLDGVNDEEQHAHQLG-K 191 (279)
Q Consensus 122 ~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i-~~vv~~g~nd~~~~l~~l~-~ 191 (279)
.....+.+..-.... .+-+.+++-.+..+...+.++.+ ++.-.-|++-+.+.+.+|+ +
T Consensus 125 ~Gadavlv~~P~Y~~------------~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La~~ 184 (343)
T 2v9d_A 125 AGADGIVVINPYYWK------------VSEANLIRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKTLADS 184 (343)
T ss_dssp HTCSEEEEECCSSSC------------CCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHHH
T ss_pred cCCCEEEECCCCCCC------------CCHHHHHHHHHHHHHhcCCCEEEEeCchhcCcCCCHHHHHHHHHh
No 28
>1o98_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; isomerase, alpha/beta-type structure; HET: 2PG; 1.4A {Bacillus stearothermophilus} SCOP: c.105.1.1 c.76.1.3 PDB: 1ejj_A* 1eqj_A* 1o99_A* 2ify_A
Probab=55.81 E-value=63 Score=29.84 Aligned_cols=78 Identities=18% Similarity=0.251 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhhCCeEEEEEEEeCC-CCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHH-HHHHHHH
Q 023640 152 EKLMNALKEYQKNSQQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDK-VSSFQKI 228 (279)
Q Consensus 152 ~~i~~~l~~~~~~~~~~v~i~~vv~~g-~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~-l~~~~~~ 228 (279)
+.+.+++ +.+++.+..+.+.-++..| +....+++..+++.+++.|++ +.+..|.. +.+..+.|... ++++.+.
T Consensus 95 ~~~~~~~-~~~~~~~~~~H~~gl~sdggvhsh~~hl~~l~~~a~~~g~~~v~~H~~~d---GrD~~p~s~~~~~~~~~~~ 170 (511)
T 1o98_A 95 ETFLAAM-NHVKQHGTSLHLFGLLSDGGVHSHIHHLYALLRLAAKEGVKRVYIHGFLD---GRDVGPQTAPQYIKELQEK 170 (511)
T ss_dssp HHHHHHH-HHHHHHTCCEEEEEECSSCCSSCCHHHHHHHHHHHHHTTCCCEEEEEEEC---SSSSCTTCHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHhcCCeEEEEEeccCCCCccHHHHHHHHHHHHHHCCCCeEEEEEEcc---CCCCCCchHHHHHHHHHHH
Confidence 4455666 4556678889998888775 777889999999999999884 66665554 45666655544 6677777
Q ss_pred HHhcCC
Q 023640 229 LRGSYN 234 (279)
Q Consensus 229 l~~~~g 234 (279)
+. +.|
T Consensus 171 ~~-~~~ 175 (511)
T 1o98_A 171 IK-EYG 175 (511)
T ss_dssp HH-HHT
T ss_pred HH-HhC
Confidence 77 444
No 29
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=55.67 E-value=31 Score=28.97 Aligned_cols=57 Identities=16% Similarity=0.115 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCch
Q 023640 48 NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV 112 (279)
Q Consensus 48 ~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~ 112 (279)
....+++.+.+.+.... |-..+.+++ |+|++. ..-.++++.+++.| ..+.+...-+.
T Consensus 75 ~~~~~~i~~~l~~~~~~-G~~Vv~L~~-GDP~i~-g~g~~l~~~l~~~g-----i~veviPGiSs 131 (280)
T 1s4d_A 75 SPKQRDISLRLVELARA-GNRVLRLKG-GDPFVF-GRGGEEALTLVEHQ-----VPFRIVPGITA 131 (280)
T ss_dssp CCCHHHHHHHHHHHHHT-TCCEEEEES-BCTTSS-SSHHHHHHHHHTTT-----CCEEEECCCCT
T ss_pred ccCHHHHHHHHHHHHhC-CCeEEEEcC-CCCccc-cCHHHHHHHHHHCC-----CCEEEEcCccH
Confidence 34567777777665432 446778888 999996 55567888888887 57777765543
No 30
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A
Probab=55.02 E-value=15 Score=30.65 Aligned_cols=57 Identities=16% Similarity=0.102 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCch
Q 023640 48 NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV 112 (279)
Q Consensus 48 ~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~ 112 (279)
.++.+++.+.+.+.... |-..+.+++ |+|+++ ....++++.+++.| +.+.+...-+.
T Consensus 59 ~~~~~~~~~~i~~~~~~-G~~Va~L~~-GDP~iy-g~~~~l~~~l~~~g-----i~veviPGiSs 115 (264)
T 3ndc_A 59 PMSLDAIIDTIAEAHAA-GQDVARLHS-GDLSIW-SAMGEQLRRLRALN-----IPYDVTPGVPS 115 (264)
T ss_dssp TSCHHHHHHHHHHHHHH-TCCEEEEES-BCTTSS-CSHHHHHHHHHHTT-----CCEEEECCCCH
T ss_pred CCCHHHHHHHHHHHHHC-CCeEEEEeC-CCCccc-cHHHHHHHHHHhCC-----CCEEEeCCHHH
Confidence 35667888777765432 445677888 999996 65667888887777 56777765443
No 31
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=54.59 E-value=22 Score=25.55 Aligned_cols=43 Identities=9% Similarity=0.030 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhccCCCceEEEe-cCCccccCHHHHHHHHHHHhCCC
Q 023640 51 SGEIVEQLVHASRLSNIRNVVFM-GMGEPLNNYAALVEAVRIMTGLP 96 (279)
Q Consensus 51 ~~ei~~~i~~~~~~~~~~~I~fs-G~GEPll~~~~i~~~i~~~~~~g 96 (279)
.++..+.+.+.... |-+.+.++ + |+|++. +...++++.+++.|
T Consensus 65 ~~~~~~~i~~~~~~-G~~V~~l~d~-GdP~i~-~~~~~l~~~~~~~g 108 (117)
T 3hh1_A 65 EERAVRQVIELLEE-GSDVALVTDA-GTPAIS-DPGYTMASAAHAAG 108 (117)
T ss_dssp HHHHHHHHHHHHHT-TCCEEEEEET-TSCGGG-STTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHC-CCeEEEEecC-CcCeEe-ccHHHHHHHHHHCC
Confidence 34555555554432 44556677 7 999995 66678888887776
No 32
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=54.23 E-value=99 Score=26.10 Aligned_cols=176 Identities=11% Similarity=0.084 Sum_probs=93.0
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecC----CccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhccC
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGM----GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDL 122 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~----GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~~~ 122 (279)
..++.++.++.+..+.+ .|++.|-..+. .-|.+. + ..++++.+.+.. ...+.+.. .....+++..+.+
T Consensus 25 ~~~~~e~k~~i~~~L~~-~Gv~~IE~g~~~~~~~~~~~~-d-~~~~~~~~~~~~----~~~~~~l~-~~~~~i~~a~~aG 96 (302)
T 2ftp_A 25 QPIEVADKIRLVDDLSA-AGLDYIEVGSFVSPKWVPQMA-G-SAEVFAGIRQRP----GVTYAALA-PNLKGFEAALESG 96 (302)
T ss_dssp SCCCHHHHHHHHHHHHH-TTCSEEEEEECSCTTTCGGGT-T-HHHHHHHSCCCT----TSEEEEEC-CSHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHH-cCcCEEEECCCcCcccccccc-C-HHHHHHHhhhcC----CCEEEEEe-CCHHHHHHHHhCC
Confidence 45788888887776654 47777766541 245553 2 345666665441 24554444 1222344444443
Q ss_pred CCceEEEEeCCCCHH-HHhhhcCCCCCCCHHHHHHHHH---HHHHhhCCeEEEEEEEeCCC----CCcHHHHHHHHHHHh
Q 023640 123 PGLNLAVSLHAPVQD-VRCQIMPAARAFPLEKLMNALK---EYQKNSQQKIFIEYIMLDGV----NDEEQHAHQLGKLLE 194 (279)
Q Consensus 123 ~~~~i~iSld~~~~~-~~~~i~~~~~~~~~~~i~~~l~---~~~~~~~~~v~i~~vv~~g~----nd~~~~l~~l~~~l~ 194 (279)
...+.+.. +.++. ..+.+ +.++++.++.++ +++++.|..+......+-+. ..+++.+.++++.+.
T Consensus 97 -~~~v~i~~-~~s~~~~~~~~-----~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~ 169 (302)
T 2ftp_A 97 -VKEVAVFA-AASEAFSQRNI-----NCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQ 169 (302)
T ss_dssp -CCEEEEEE-ESCHHHHHHHH-----SSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHH
T ss_pred -cCEEEEEE-ecCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHH
Confidence 22344443 33333 23333 134554444443 45567788776554433111 135678888888888
Q ss_pred hCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcC-CeEEEec--ccccc
Q 023640 195 TFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY-NIRTTVR--KQMGQ 245 (279)
Q Consensus 195 ~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~-gi~v~vr--~~~g~ 245 (279)
+.|+. +.+- ...| + ..+++..++.+.+++.. ++++.+. ...|.
T Consensus 170 ~~G~d~i~l~--DT~G----~--~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gl 216 (302)
T 2ftp_A 170 QMGCYEVSLG--DTIG----V--GTAGATRRLIEAVASEVPRERLAGHFHDTYGQ 216 (302)
T ss_dssp HTTCSEEEEE--ESSS----C--CCHHHHHHHHHHHTTTSCGGGEEEEEBCTTSC
T ss_pred HcCCCEEEEe--CCCC----C--cCHHHHHHHHHHHHHhCCCCeEEEEeCCCccH
Confidence 99986 5553 2221 1 35677777767666344 3444443 34443
No 33
>3v39_A D-alanyl-D-alanine carboxypeptidase; peptidoglycan transpeptidase fold, endopeptidase, serine MOD hepes buffer molecule, hydrolase; HET: PGE; 1.45A {Bdellovibrio bacteriovorus}
Probab=53.64 E-value=9.9 Score=34.30 Aligned_cols=30 Identities=10% Similarity=0.123 Sum_probs=26.5
Q ss_pred ceEEEecCCccccCHHHHHHHHHHHhCCCC
Q 023640 68 RNVVFMGMGEPLNNYAALVEAVRIMTGLPF 97 (279)
Q Consensus 68 ~~I~fsG~GEPll~~~~i~~~i~~~~~~g~ 97 (279)
..+.+.|.|+|+|..+.+.++++.+++.|+
T Consensus 68 Gdl~l~G~GDP~l~~~~l~~la~~l~~~Gi 97 (418)
T 3v39_A 68 YDIHIEGSRDPLFGRNMSYFLISELNRMKI 97 (418)
T ss_dssp EEEEEECCCCTTCSHHHHHHHHHHHHHTTC
T ss_pred ceEEEEeCCCCCcCHHHHHHHHHHHHHcCC
Confidence 468888889999998899999999999884
No 34
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=52.15 E-value=26 Score=25.50 Aligned_cols=21 Identities=10% Similarity=0.287 Sum_probs=13.9
Q ss_pred CceEEEEeccCCcCccCccccC
Q 023640 19 PRSTLCISSQVGCKMGCNFCAT 40 (279)
Q Consensus 19 ~~~~l~i~~~~gCNl~C~yC~~ 40 (279)
.+.+||.-.+..||. |+||..
T Consensus 20 ~~VvvF~Kgt~~~P~-C~fc~~ 40 (118)
T 2wul_A 20 DKVVVFLKGTPEQPQ-CGFSNA 40 (118)
T ss_dssp SSEEEEESBCSSSBS-SHHHHH
T ss_pred CCEEEEEcCCCCCCC-CHHHHH
Confidence 567788744455665 889965
No 35
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=51.51 E-value=4.1 Score=26.72 Aligned_cols=12 Identities=33% Similarity=1.173 Sum_probs=10.2
Q ss_pred CcCcc-CccccCC
Q 023640 30 GCKMG-CNFCATG 41 (279)
Q Consensus 30 gCNl~-C~yC~~~ 41 (279)
.|+++ |+||.+.
T Consensus 27 nCs~NiCPYC~nR 39 (77)
T 2l7x_A 27 NCSYNICPYCASR 39 (77)
T ss_dssp HHTTTCCTTTCCC
T ss_pred CCCcccChhhhcc
Confidence 49998 9999884
No 36
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=51.46 E-value=99 Score=26.00 Aligned_cols=131 Identities=16% Similarity=0.184 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHHhc-cCCCceEEEecC-Cc-cccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhh--hHHHhc
Q 023640 47 SNLSSGEIVEQLVHASR-LSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHA--INKFHS 120 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~-~~~~~~I~fsG~-GE-Pll~~~~i~~~i~~~~~~-g~~~~~~~v~i~TNG~~~~--~~~l~~ 120 (279)
..++.+.+.+.++.... . |++.|...|. || |+|..++-.++++.+.+. +-+.+ .-..+.+|.+... ..+.++
T Consensus 19 g~iD~~~l~~lv~~li~~~-Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvp-viaGvg~~~t~~ai~la~~a~ 96 (293)
T 1f6k_A 19 GTINEKGLRQIIRHNIDKM-KVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIA-LIAQVGSVNLKEAVELGKYAT 96 (293)
T ss_dssp SCBCHHHHHHHHHHHHHTS-CCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSE-EEEECCCSCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhhC-CCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCe-EEEecCCCCHHHHHHHHHHHH
Q ss_pred cCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEE-EEEEeCCCCCcHHHHHHHHH
Q 023640 121 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI-EYIMLDGVNDEEQHAHQLGK 191 (279)
Q Consensus 121 ~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i-~~vv~~g~nd~~~~l~~l~~ 191 (279)
......+.+..-.... .+-+.+.+..+..++..+.++.+ ++.-.-|++-+.+.+.+|++
T Consensus 97 ~~Gadavlv~~P~y~~------------~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 156 (293)
T 1f6k_A 97 ELGYDCLSAVTPFYYK------------FSFPEIKHYYDTIIAETGSNMIVYSIPFLTGVNMGIEQFGELYK 156 (293)
T ss_dssp HHTCSEEEEECCCSSC------------CCHHHHHHHHHHHHHHHCCCEEEEECHHHHCCCCCHHHHHHHHT
T ss_pred hcCCCEEEECCCCCCC------------CCHHHHHHHHHHHHHhCCCCEEEEECccccCcCCCHHHHHHHhc
No 37
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=50.79 E-value=1.3e+02 Score=26.40 Aligned_cols=177 Identities=8% Similarity=0.056 Sum_probs=90.8
Q ss_pred ccCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhccC--C
Q 023640 46 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDL--P 123 (279)
Q Consensus 46 ~~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~~~--~ 123 (279)
...++.++-++.+..+.+. |++.|-... |..++... +.++.+.+.. +...+...+-+....++...+.. -
T Consensus 28 ~~~~~~~~Kl~ia~~L~~~-Gv~~IE~g~---p~~~~~d~-e~v~~i~~~~---~~~~i~~l~r~~~~di~~a~~al~~a 99 (370)
T 3rmj_A 28 GAAMTKEEKIRVARQLEKL-GVDIIEAGF---AAASPGDF-EAVNAIAKTI---TKSTVCSLSRAIERDIRQAGEAVAPA 99 (370)
T ss_dssp TCCCCHHHHHHHHHHHHHH-TCSEEEEEE---GGGCHHHH-HHHHHHHTTC---SSSEEEEEEESSHHHHHHHHHHHTTS
T ss_pred CCCcCHHHHHHHHHHHHHc-CCCEEEEeC---CCCCHHHH-HHHHHHHHhC---CCCeEEEEecCCHHHHHHHHHHHhhC
Confidence 3468899988888876553 777666533 77776544 4455555441 12344443322222233322211 0
Q ss_pred Cce-EEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHH---HHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE
Q 023640 124 GLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK---EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 199 (279)
Q Consensus 124 ~~~-i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~---~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~ 199 (279)
..+ +.+.+.+.+-.....+ +.+.+++++.+. +++++.+..+.+...- +...+.+.+.++++.+.+.|+.
T Consensus 100 g~~~v~if~~~Sd~h~~~~l-----~~s~~e~l~~~~~~v~~a~~~g~~v~~~~ed--~~r~~~~~~~~~~~~~~~~Ga~ 172 (370)
T 3rmj_A 100 PKKRIHTFIATSPIHMEYKL-----KMKPKQVIEAAVKAVKIAREYTDDVEFSCED--ALRSEIDFLAEICGAVIEAGAT 172 (370)
T ss_dssp SSEEEEEEEECSHHHHHHTT-----CCCHHHHHHHHHHHHHHHTTTCSCEEEEEET--GGGSCHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEEecCcHHHHHHHh-----CCCHHHHHHHHHHHHHHHHHcCCEEEEecCC--CCccCHHHHHHHHHHHHHcCCC
Confidence 233 3343333222222222 245555555433 4556667766554331 2234577888999999888886
Q ss_pred -EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCC----eEE--Eecccccc
Q 023640 200 -VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN----IRT--TVRKQMGQ 245 (279)
Q Consensus 200 -i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~g----i~v--~vr~~~g~ 245 (279)
+.+-.-. ...++.++.++.+.+.+..+ +.+ ....+.|.
T Consensus 173 ~i~l~DT~--------G~~~P~~~~~lv~~l~~~~~~~~~~~l~~H~Hnd~Gl 217 (370)
T 3rmj_A 173 TINIPDTV--------GYSIPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLGL 217 (370)
T ss_dssp EEEEECSS--------SCCCHHHHHHHHHHHHHHSTTGGGSEEEEECBCTTSC
T ss_pred EEEecCcc--------CCcCHHHHHHHHHHHHHhCCCcCceEEEEEeCCCCCh
Confidence 5543111 12456666777666653333 343 44445544
No 38
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile}
Probab=49.88 E-value=17 Score=30.02 Aligned_cols=57 Identities=14% Similarity=0.064 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCch
Q 023640 48 NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV 112 (279)
Q Consensus 48 ~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~ 112 (279)
.++.+++.+.+.+.... |-+.+.+++ |+|++. ....++++.+++.| ..+.+...-+.
T Consensus 60 ~~~~~~~~~~i~~~~~~-g~~V~~l~~-GDP~i~-~~~~~l~~~l~~~g-----i~veviPGiSS 116 (253)
T 4e16_A 60 HMDLQEIIDVMREGIEN-NKSVVRLQT-GDFSIY-GSIREQVEDLNKLN-----IDYDCTPGVSS 116 (253)
T ss_dssp GCCHHHHHHHHHHHHHT-TCCEEEEES-BCTTTT-CCHHHHHHHHHHHT-----CCEEEECCCCH
T ss_pred CCCHHHHHHHHHHHHHC-CCcEEEEeC-CCCccc-cCHHHHHHHHHHCC-----CCEEEECCHHH
Confidence 35667787777765432 445677888 999996 55567777777767 56777765543
No 39
>1w5d_A Penicillin-binding protein; D-Ala-D-Ala-carboxypeptidase, peptidoglycan, beta-lactam, hydrolase, peptidoglycan synthesis; 2.1A {Bacillus subtilis} SCOP: e.3.1.3 PDB: 2j9p_A*
Probab=48.94 E-value=18 Score=32.99 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=32.1
Q ss_pred eEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCc
Q 023640 69 NVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGI 111 (279)
Q Consensus 69 ~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~ 111 (279)
.+.|.|.|+|+|..+.+.++++.+++.|+.-..-.+.+..+-+
T Consensus 90 dL~l~G~GDPtL~~~~l~~la~~l~~~Gi~~I~G~l~~D~s~f 132 (462)
T 1w5d_A 90 NLYLKGKGDPTLLPSDFDKMAEILKHSGVKVIKGNLIGDDTWH 132 (462)
T ss_dssp CEEEEECSCTTCCHHHHHHHHHHHHHTTCCEESSCEEEECTTS
T ss_pred eEEEEeCCCCccCHHHHHHHHHHHHHcCCcEEeeeEEEECCcc
Confidence 5888888999999889999999999988532112556666543
No 40
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=48.58 E-value=1.3e+02 Score=25.63 Aligned_cols=170 Identities=8% Similarity=0.041 Sum_probs=92.0
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecCC----ccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhccC
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGMG----EPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDL 122 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~G----EPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~~~ 122 (279)
..++.++.++.+..+.+ .|++.|-+.+.- -|.+. + ..++++.+++.. ...+...+-. ...++...+.+
T Consensus 23 ~~~~~e~k~~i~~~L~~-~Gv~~IE~g~~~~~~~~p~~~-d-~~~~~~~~~~~~----~~~~~~l~~~-~~~i~~a~~~g 94 (307)
T 1ydo_A 23 VWIATEDKITWINQLSR-TGLSYIEITSFVHPKWIPALR-D-AIDVAKGIDREK----GVTYAALVPN-QRGLENALEGG 94 (307)
T ss_dssp SCCCHHHHHHHHHHHHT-TTCSEEEEEECSCTTTCGGGT-T-HHHHHHHSCCCT----TCEEEEECCS-HHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHH-cCCCEEEECCCcCcccccccC-C-HHHHHHHhhhcC----CCeEEEEeCC-HHhHHHHHhCC
Confidence 46788888888887765 488888776511 35553 2 235666665441 1344443321 22344444443
Q ss_pred CCceEEEEeCCCCHHHHhhhcCCCCCCCHHH----HHHHHHHHHHhhCCeEEEEEEEeCC----CCCcHHHHHHHHHHHh
Q 023640 123 PGLNLAVSLHAPVQDVRCQIMPAARAFPLEK----LMNALKEYQKNSQQKIFIEYIMLDG----VNDEEQHAHQLGKLLE 194 (279)
Q Consensus 123 ~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~----i~~~l~~~~~~~~~~v~i~~vv~~g----~nd~~~~l~~l~~~l~ 194 (279)
...+.+.+. .++....+-. +.+.++ +.+.+ +++++.|..+.......=+ -..+++.+.++++.+.
T Consensus 95 -~~~v~i~~~-~sd~~~~~~l----~~s~~e~l~~~~~~v-~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (307)
T 1ydo_A 95 -INEACVFMS-ASETHNRKNI----NKSTSESLHILKQVN-NDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIRLSEALF 167 (307)
T ss_dssp -CSEEEEEEE-SSHHHHHTTT----CSCHHHHHHHHHHHH-HHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHH
T ss_pred -cCEEEEEee-cCHHHHHHHh----CCCHHHHHHHHHHHH-HHHHHCCCEEEEEEEEEecCCcCCCCCHHHHHHHHHHHH
Confidence 223444443 2333222211 234444 45555 5566778877655443211 0135788899999998
Q ss_pred hCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcC-CeEEEe
Q 023640 195 TFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY-NIRTTV 239 (279)
Q Consensus 195 ~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~-gi~v~v 239 (279)
+.|+. +.+- ... ...+++++.++.+.+++.. ++.+.+
T Consensus 168 ~~Ga~~i~l~--DT~------G~~~P~~v~~lv~~l~~~~~~~~l~~ 206 (307)
T 1ydo_A 168 EFGISELSLG--DTI------GAANPAQVETVLEALLARFPANQIAL 206 (307)
T ss_dssp HHTCSCEEEE--CSS------CCCCHHHHHHHHHHHHTTSCGGGEEE
T ss_pred hcCCCEEEEc--CCC------CCcCHHHHHHHHHHHHHhCCCCeEEE
Confidence 88886 6553 222 1246788788877777444 244433
No 41
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=47.25 E-value=69 Score=22.25 Aligned_cols=71 Identities=14% Similarity=0.357 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCCHHHHHHHHHHH
Q 023640 150 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 229 (279)
Q Consensus 150 ~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l 229 (279)
+-+++.++++++.++++..+. ++++ |+.+-.+..+.+++.+|..+-++-|.. +..++++|....
T Consensus 34 spqelkdsieelvkkynativ--vvvv----ddkewaekairfvkslgaqvliiiydq----------dqnrleefsrev 97 (134)
T 2l69_A 34 SPQELKDSIEELVKKYNATIV--VVVV----DDKEWAEKAIRFVKSLGAQVLIIIYDQ----------DQNRLEEFSREV 97 (134)
T ss_dssp SHHHHHHHHHHHTTCCCCEEE--EEEC----SSHHHHHHHHHHHHHHCCCCEEEEECS----------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCeEE--EEEE----ccHHHHHHHHHHHHhcCCeEEEEEEeC----------chhHHHHHHHHH
Confidence 345666777777776665443 2333 455667778889999988755554443 456677777777
Q ss_pred HhcCCeEE
Q 023640 230 RGSYNIRT 237 (279)
Q Consensus 230 ~~~~gi~v 237 (279)
+ ..|.++
T Consensus 98 r-rrgfev 104 (134)
T 2l69_A 98 R-RRGFEV 104 (134)
T ss_dssp H-HTTCCE
T ss_pred H-hcCceE
Confidence 7 556654
No 42
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=46.64 E-value=27 Score=24.59 Aligned_cols=68 Identities=19% Similarity=0.307 Sum_probs=33.8
Q ss_pred CCceEEEEeccCCcCccCccccCC-------CCCC-ccCC-CHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHH
Q 023640 18 GPRSTLCISSQVGCKMGCNFCATG-------TMGF-KSNL-SSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEA 88 (279)
Q Consensus 18 ~~~~~l~i~~~~gCNl~C~yC~~~-------~~~~-~~~~-~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~ 88 (279)
..+.++|...+..+ -.|+||... .... ...+ ..+++.+.+.+......+- ..|.| |+..--++.+.++
T Consensus 17 ~~~Vvvy~k~t~~~-p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP-~ifi~-g~~iGG~d~l~~l 93 (109)
T 3ipz_A 17 SEKVVLFMKGTRDF-PMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFP-QLYIG-GEFFGGCDITLEA 93 (109)
T ss_dssp SSSEEEEESBCSSS-BSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSC-EEEET-TEEEECHHHHHHH
T ss_pred cCCEEEEEecCCCC-CCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCC-eEEEC-CEEEeCHHHHHHH
Confidence 45677777444433 479999651 1111 1111 1234445555443222333 45667 7776666654443
No 43
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=46.53 E-value=31 Score=24.94 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=13.7
Q ss_pred CCceEEEEeccCCcCccCccccC
Q 023640 18 GPRSTLCISSQVGCKMGCNFCAT 40 (279)
Q Consensus 18 ~~~~~l~i~~~~gCNl~C~yC~~ 40 (279)
..+.+||..++.-|+ .|+||..
T Consensus 15 ~~~Vvvfsk~t~~~p-~Cp~C~~ 36 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFP-KCGFSRA 36 (121)
T ss_dssp SCSEEEEESBCSSSB-CTTHHHH
T ss_pred cCCEEEEEeccCCCC-CCccHHH
Confidence 345677775444444 4889965
No 44
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynth methyltransferase; HET: SAH; 2.40A {Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Probab=46.46 E-value=24 Score=29.74 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCch
Q 023640 49 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV 112 (279)
Q Consensus 49 ~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~ 112 (279)
++.+++.+.+.+.... +-+.+.+++ |+|++. ....++++.+.+.| +.+.+...-+.
T Consensus 77 ~~~~~~~~~i~~~~~~-g~~Vv~L~~-GDP~i~-g~~~~l~~~l~~~g-----i~veviPGiSS 132 (285)
T 1cbf_A 77 MHLEEMVGTMLDRMRE-GKMVVRVHT-GDPAMY-GAIMEQMVLLKREG-----VDIEIVPGVTS 132 (285)
T ss_dssp CCHHHHHHHHHHHHTT-TCCEEEEES-BCTTTT-CCCHHHHHHHHHTT-----CEEEEECCCCH
T ss_pred CCHHHHHHHHHHHHHC-CCeEEEEeC-CCcccc-ccHHHHHHHHHHCC-----CcEEEECCchH
Confidence 4567777777765432 446777888 999995 55567778887777 67888876554
No 45
>1w79_A D-alanyl-D-alanine carboxypeptidase; penicillin-binding, peptidoglycan, transpeptidase, antibiotic resistance, hydrolase; 1.8A {Actinomadura SP} SCOP: e.3.1.3 PDB: 1w8q_A 1w8y_A* 2vgj_A* 2vgk_A* 2xln_A* 2y5o_A* 2xdm_A* 2xk1_A* 2y4a_A* 2y55_A* 2y59_A* 2wke_A* 2y5r_A* 3zvt_A* 3zvw_A*
Probab=45.61 E-value=22 Score=32.69 Aligned_cols=43 Identities=9% Similarity=0.125 Sum_probs=32.1
Q ss_pred ceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC
Q 023640 68 RNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 110 (279)
Q Consensus 68 ~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG 110 (279)
..+.+.|.|+|+|..+.+.++++.+++.|+.-..-.+.+..+-
T Consensus 86 gdL~l~G~GDPtL~~~~L~~La~~L~~~GI~~I~G~lv~D~s~ 128 (489)
T 1w79_A 86 QDLYLVGRGDPTLSAEDLDAMAAEVAASGVRTVRGDLYADDTW 128 (489)
T ss_dssp SCEEEEECSCTTCCHHHHHHHHHHHHHTTCCEECSCEEEECTT
T ss_pred ccEEEEeCCCCccCHHHHHHHHHHHHHcCCcEEeeeEEEECCc
Confidence 3588888899999988999999999998853211255666654
No 46
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=43.36 E-value=29 Score=27.93 Aligned_cols=53 Identities=4% Similarity=-0.073 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCch
Q 023640 52 GEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV 112 (279)
Q Consensus 52 ~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~ 112 (279)
+++.+.+.+.... |-+.+.+++ |+|++. .....+++.+++.| ..+.+...-+.
T Consensus 81 ~~~~~~i~~~~~~-g~~V~~l~~-GDP~i~-~~~~~l~~~~~~~g-----i~v~viPGiSs 133 (232)
T 2qbu_A 81 DSAARMVAAELED-GRDVAFITL-GDPSIY-STFSYLQQRIEDMG-----FKTEMVPGVTS 133 (232)
T ss_dssp HHHHHHHHHHHHT-TCCEEEEES-BCTTBS-CSHHHHHHHHHHTT-----CCEEEECCCCH
T ss_pred HHHHHHHHHHHHC-CCeEEEEeC-CCCccc-hhHHHHHHHHHHCC-----CcEEEeCCccH
Confidence 4555666554432 445677888 999996 66667788888877 57777765543
No 47
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=41.79 E-value=43 Score=24.11 Aligned_cols=66 Identities=15% Similarity=0.291 Sum_probs=33.2
Q ss_pred CceEEEEeccCCcCccCccccCC-------CCC-C-ccCC-CHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHH
Q 023640 19 PRSTLCISSQVGCKMGCNFCATG-------TMG-F-KSNL-SSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVE 87 (279)
Q Consensus 19 ~~~~l~i~~~~gCNl~C~yC~~~-------~~~-~-~~~~-~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~ 87 (279)
.+.++|...+..|| .|+||..- ... . ...+ ..+++.+.+.+......+- ..|.+ |+..--++.+.+
T Consensus 20 ~~Vvvfsk~t~~~p-~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg~~tvP-~vfI~-g~~IGG~d~l~~ 95 (118)
T 2wem_A 20 DKVVVFLKGTPEQP-QCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIP-QVYLN-GEFVGGCDILLQ 95 (118)
T ss_dssp SSEEEEESBCSSSB-SSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHTCCSSC-EEEET-TEEEESHHHHHH
T ss_pred CCEEEEEecCCCCC-ccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhCCCCcC-eEEEC-CEEEeChHHHHH
Confidence 46777775444443 48999651 111 1 1122 2235555555543222333 44667 777666665443
No 48
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=41.41 E-value=1.4e+02 Score=24.24 Aligned_cols=40 Identities=15% Similarity=0.087 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCC
Q 023640 49 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP 96 (279)
Q Consensus 49 ~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g 96 (279)
.+.++.++.+.+. |++.|-+.+ ..+ ...+.++-+.+++.|
T Consensus 38 ~~~~~~l~~~~~~----G~~~vEl~~-~~~---~~~~~~~~~~l~~~g 77 (287)
T 3kws_A 38 ESLNEKLDFMEKL----GVVGFEPGG-GGL---AGRVNEIKQALNGRN 77 (287)
T ss_dssp SSHHHHHHHHHHT----TCCEEECBS-TTC---GGGHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHc----CCCEEEecC-Cch---HHHHHHHHHHHHHcC
Confidence 3555655555532 677788777 422 234556666666666
No 49
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=40.46 E-value=2.1e+02 Score=25.92 Aligned_cols=166 Identities=10% Similarity=0.067 Sum_probs=89.1
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEEecCCcc------ccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC-----ch--h-
Q 023640 48 NLSSGEIVEQLVHASRLSNIRNVVFMGMGEP------LNNYAALVEAVRIMTGLPFQVSPKRITVSTVG-----IV--H- 113 (279)
Q Consensus 48 ~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEP------ll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG-----~~--~- 113 (279)
.++.++.++.+..+.+ .|+..|-..| |-- +++.+. .+.++.+++.. +...+.+.+.| +. +
T Consensus 26 ~~~~~dkl~Ia~~L~~-~Gv~~IE~g~-~atF~~~~r~~~~d~-~e~l~~i~~~~---~~~~l~~l~R~~N~~G~~~~~d 99 (464)
T 2nx9_A 26 RLRIDDMLPIAQQLDQ-IGYWSLECWG-GATFDSCIRFLGEDP-WQRLRLLKQAM---PNTPLQMLLRGQNLLGYRHYAD 99 (464)
T ss_dssp CCCGGGTGGGHHHHHT-SCCSEEEEEE-TTHHHHHHHTTCCCH-HHHHHHHHHHC---SSSCEEEEECGGGTTSSSCCCH
T ss_pred CCCHHHHHHHHHHHHH-cCCCEEEeCc-CccccchhhccCCCH-HHHHHHHHHhC---CCCeEEEEeccccccCcccccc
Confidence 4677777777766554 4888898887 532 334222 34455554321 12445544532 21 1
Q ss_pred -----hhHHHhccCCCceE-EEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHH
Q 023640 114 -----AINKFHSDLPGLNL-AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAH 187 (279)
Q Consensus 114 -----~~~~l~~~~~~~~i-~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~ 187 (279)
.++...+.+ +++ .|-. +.++ ++.+.+.+ +++++.|..+.+.....-+...+.+.+.
T Consensus 100 dv~~~~v~~a~~~G--vd~i~if~-~~sd--------------~~ni~~~i-~~ak~~G~~v~~~i~~~~~~~~~~e~~~ 161 (464)
T 2nx9_A 100 DVVDTFVERAVKNG--MDVFRVFD-AMND--------------VRNMQQAL-QAVKKMGAHAQGTLCYTTSPVHNLQTWV 161 (464)
T ss_dssp HHHHHHHHHHHHTT--CCEEEECC-TTCC--------------THHHHHHH-HHHHHTTCEEEEEEECCCCTTCCHHHHH
T ss_pred hhhHHHHHHHHhCC--cCEEEEEE-ecCH--------------HHHHHHHH-HHHHHCCCEEEEEEEeeeCCCCCHHHHH
Confidence 122233332 343 2322 2211 23455666 5677788877655543434444678899
Q ss_pred HHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEE--ecccccc
Q 023640 188 QLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT--VRKQMGQ 245 (279)
Q Consensus 188 ~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~--vr~~~g~ 245 (279)
++++.+.+.|+. +.+-.-.- ...+.++.++.+.+++..++.+. .....|.
T Consensus 162 ~~a~~l~~~Gad~I~l~DT~G--------~~~P~~v~~lv~~l~~~~~~~i~~H~Hnd~Gl 214 (464)
T 2nx9_A 162 DVAQQLAELGVDSIALKDMAG--------ILTPYAAEELVSTLKKQVDVELHLHCHSTAGL 214 (464)
T ss_dssp HHHHHHHHTTCSEEEEEETTS--------CCCHHHHHHHHHHHHHHCCSCEEEEECCTTSC
T ss_pred HHHHHHHHCCCCEEEEcCCCC--------CcCHHHHHHHHHHHHHhcCCeEEEEECCCCCh
Confidence 999999999986 55532222 13577777777776644454443 3344443
No 50
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=40.18 E-value=29 Score=28.63 Aligned_cols=53 Identities=6% Similarity=-0.118 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCch
Q 023640 52 GEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV 112 (279)
Q Consensus 52 ~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~ 112 (279)
+++.+.+.+.... |-+.+.+++ |+|++. .....+++.+++.| +.+.+...-+.
T Consensus 83 ~~~~~~i~~~~~~-g~~Va~l~~-GDP~~~-~~~~~l~~~l~~~g-----i~v~viPGiSs 135 (259)
T 2e0n_A 83 AANYASMAEEVQA-GRRVAVVSV-GDGGFY-STASAIIERARRDG-----LDCSMTPGIPA 135 (259)
T ss_dssp GGGHHHHHHHHHT-TCEEEEEES-BCTTBS-CTHHHHHHHHHTTT-----CCEEEECCCCH
T ss_pred HHHHHHHHHHHHC-CCeEEEEeC-CCCccc-ccHHHHHHHHHHCC-----CCEEEeCChhH
Confidence 4555555554332 445677788 999995 66678889998887 67888776544
No 51
>3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt, isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana} PDB: 3igy_B* 3nvl_A
Probab=40.15 E-value=2.2e+02 Score=26.51 Aligned_cols=79 Identities=8% Similarity=0.032 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhhCCeEEEEEEEeCC-CCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHH-HHHHH--
Q 023640 152 EKLMNALKEYQKNSQQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDK-VSSFQ-- 226 (279)
Q Consensus 152 ~~i~~~l~~~~~~~~~~v~i~~vv~~g-~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~-l~~~~-- 226 (279)
+.+.+++ +.+++.+..+.+.-++..| +....+++.+|++.+++.|+. +.+..|.. +.+.++-|... ++++.
T Consensus 108 ~~l~~~~-~~~~~~~~~lHl~GL~SdGGVHSh~~Hl~~l~~~a~~~g~~~v~vH~f~D---GRD~~p~S~~~~~~~l~~~ 183 (561)
T 3igz_B 108 EGYRYLH-GAFSKEGSTLHLIGLLSDGGVHSRDNQIYSIIEHAVKDGAKRIRVHALYD---GRDVPDGSSFRFTDELEAV 183 (561)
T ss_dssp HHHHHHH-HHHTSTTCCEEEEEECSSCCSSCCHHHHHHHHHHHHHTTCCEEEEEEEEC---SSSSCTTTHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHhcCCeEEEEEeccCCCccchHHHHHHHHHHHHHcCCCeEEEEEEcc---CCCCCcchHHHHHHHHHHH
Confidence 4445555 4556678889998888775 777789999999999999984 66665554 45666666544 45554
Q ss_pred -HHHHhcCCe
Q 023640 227 -KILRGSYNI 235 (279)
Q Consensus 227 -~~l~~~~gi 235 (279)
+.++ +.|.
T Consensus 184 ~~~~~-~~g~ 192 (561)
T 3igz_B 184 LAKVR-QNGC 192 (561)
T ss_dssp HHHHH-TTTC
T ss_pred HHHHH-hcCC
Confidence 3466 6665
No 52
>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis}
Probab=40.13 E-value=1.9e+02 Score=25.39 Aligned_cols=149 Identities=8% Similarity=0.058 Sum_probs=77.5
Q ss_pred CHHHHHHHHHHHhccCCCceEEEecC----CccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhh--------hHH
Q 023640 50 SSGEIVEQLVHASRLSNIRNVVFMGM----GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHA--------INK 117 (279)
Q Consensus 50 ~~~ei~~~i~~~~~~~~~~~I~fsG~----GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~--------~~~ 117 (279)
+.++..+.++.++. .|...| ||.. +++-...+.+.++++.+++.| +.+.++-|..... +..
T Consensus 15 ~~~~~~~yi~~a~~-~Gf~~I-FTSL~~~e~~~~~~~~~~~~l~~~a~~~g-----~~vi~DIsp~~l~~Lg~s~~dl~~ 87 (372)
T 2p0o_A 15 ITNDTIIYIKKMKA-LGFDGI-FTSLHIPEDDTSLYRQRLTDLGAIAKAEK-----MKIMVDISGEALKRAGFSFDELEP 87 (372)
T ss_dssp CCHHHHHHHHHHHH-TTCCEE-EEEECCC-----CHHHHHHHHHHHHHHHT-----CEEEEEECHHHHHTTTCBTTBCHH
T ss_pred CHHHHHHHHHHHHH-CCCCEE-EccCCccCCChHHHHHHHHHHHHHHHHCC-----CEEEEECCHHHHHHcCCCHHHHHH
Confidence 34555566665554 355443 3331 233333467889999999998 7888888864321 112
Q ss_pred HhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCC
Q 023640 118 FHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 197 (279)
Q Consensus 118 l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~ 197 (279)
+.+.+ ... |-||. +.+.+.+. .+.+ ..++.++.- +-+.+.+..+.+.-....
T Consensus 88 ~~~lG-i~g--lRLD~--------------Gf~~~eia----~ls~--nlkIeLNAS-----ti~~~~l~~l~~~~~n~~ 139 (372)
T 2p0o_A 88 LIELG-VTG--LRMDY--------------GITIEQMA----HASH--KIDIGLNAS-----TITLEEVAELKAHQADFS 139 (372)
T ss_dssp HHHHT-CCE--EEECS--------------SCCHHHHH----HHHT--TSEEEEETT-----TCCHHHHHHHHHTTCCGG
T ss_pred HHHcC-CCE--EEEcC--------------CCCHHHHH----HHhc--CCEEEEECc-----cCCHHHHHHHHHcCCChH
Confidence 22221 112 23331 12222211 1111 134444321 224566666654332221
Q ss_pred cEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEE
Q 023640 198 VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 238 (279)
Q Consensus 198 ~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~ 238 (279)
.-....-|.|. .+...+.+.+.+--++++ ++|+++.
T Consensus 140 ~l~a~HNFYPr----~~TGLs~~~f~~~n~~~k-~~Gi~t~ 175 (372)
T 2p0o_A 140 RLEAWHNYYPR----PETGIGTTFFNEKNRWLK-ELGLQVF 175 (372)
T ss_dssp GEEEECCCCCS----TTCSBCHHHHHHHHHHHH-HTTCEEE
T ss_pred HeEEeeccCCC----CCCCCCHHHHHHHHHHHH-HCCCcEE
Confidence 12334456664 444578999999999999 8999875
No 53
>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH; 2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A*
Probab=39.70 E-value=38 Score=28.64 Aligned_cols=56 Identities=25% Similarity=0.203 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCch
Q 023640 49 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV 112 (279)
Q Consensus 49 ~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~ 112 (279)
...+++.+.+.+.... |-+.+.+.+ |+|++. ....++++.+++.| +.+.+...-+.
T Consensus 86 ~~~~~i~~~l~~~~~~-G~~Vv~L~~-GDP~i~-g~g~~l~~~l~~~g-----i~vevIPGiSS 141 (294)
T 2ybo_A 86 LPQEEINELLVRLARQ-QRRVVRLKG-GDPFIF-GRGAEELERLLEAG-----VDCQVVPGVTA 141 (294)
T ss_dssp -CHHHHHHHHHHHHHT-TCCEEEEEE-BCTTSS-SSHHHHHHHHHHTT-----CCEEEECCCCH
T ss_pred CCHHHHHHHHHHHHHC-CCeEEEEcC-CCCCcc-CCHHHHHHHHHHCC-----CCEEEECCHHH
Confidence 3556777766654432 445677788 999996 55567778887777 57887765543
No 54
>3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; DUF849 family protein, TIM beta/alpha-barrel fold, structura genomics; HET: MSE; 1.72A {Ralstonia eutropha}
Probab=38.95 E-value=72 Score=27.45 Aligned_cols=58 Identities=10% Similarity=0.100 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEEe--c--CCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 023640 48 NLSSGEIVEQLVHASRLSNIRNVVFM--G--MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 109 (279)
Q Consensus 48 ~~~~~ei~~~i~~~~~~~~~~~I~fs--G--~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TN 109 (279)
.+|++|+.+...+..+. |...|.+. . .|.|++.++.+.++++.+++.. +.+.+.++|.
T Consensus 44 PvTpeEIa~~A~~a~~A-GAaivHlHvRd~~~G~ps~d~~~y~e~~~~IR~~~---~d~ii~~TTg 105 (316)
T 3c6c_A 44 PITPAQIADACVEAAKA-GASVAHIHVRDPKTGGGSRDPVLFKEVVDRVRSSG---TDIVLNLTCG 105 (316)
T ss_dssp CCSHHHHHHHHHHHHHH-TCSEEEECEECTTTCCEECCHHHHHHHHHHHHTTT---CCCEEEEECC
T ss_pred CCCHHHHHHHHHHHHHc-CCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHHC---CCeEEEeCCC
Confidence 47999999999987653 55444443 2 3789999999999999999862 1378999996
No 55
>1d8w_A L-rhamnose isomerase; beta-alpha-8-barrels, aldose-ketose isomerization, hydride shift; 1.60A {Escherichia coli} SCOP: c.1.15.2 PDB: 1de5_A* 1de6_A*
Probab=38.62 E-value=1.9e+02 Score=25.74 Aligned_cols=131 Identities=11% Similarity=0.101 Sum_probs=76.0
Q ss_pred ccCCCHHHHHHHHHHHhcc-CCCceEEEecC----Ccccc----CHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhH
Q 023640 46 KSNLSSGEIVEQLVHASRL-SNIRNVVFMGM----GEPLN----NYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAIN 116 (279)
Q Consensus 46 ~~~~~~~ei~~~i~~~~~~-~~~~~I~fsG~----GEPll----~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~ 116 (279)
+...+++|+.+.+..+... ++...|++.-. |++.= -++.+...++.+++.| +.+.+.+|-+.. .
T Consensus 74 G~aR~~~El~~D~~~v~~Lipg~~rvnLH~~y~~~~~~vDrd~~~~~hf~~w~~~Ak~~G-----lglDfNpt~Fsh--p 146 (426)
T 1d8w_A 74 GKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQ-----LGLDFNPSCFSH--P 146 (426)
T ss_dssp CCCCSHHHHHHHHHHHHHTSCSCEEEEEEGGGCCCSSCCCGGGCCGGGGHHHHHHHHHTT-----CEEEEECCCSSS--G
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCceEeeeeeccCCCcccccccchhhHHHHHHHHHHhC-----CCcCcCCCccCC--c
Confidence 4678999999888876542 34456665542 44221 2456788999999998 566677765432 1
Q ss_pred HHhccCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCC----CcHHHHHHHHHH
Q 023640 117 KFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVN----DEEQHAHQLGKL 192 (279)
Q Consensus 117 ~l~~~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~n----d~~~~l~~l~~~ 192 (279)
. ....+||-.+++++++.... ...+.++-.+.+-++.|.+-.+++=+-.|.| |-..--+.+.+-
T Consensus 147 ~-------~k~G~SLshpD~~IR~fwI~-----H~~~c~~I~~~~g~~lGs~~v~niWi~DG~kd~P~dr~~~r~Rl~eS 214 (426)
T 1d8w_A 147 L-------SADGFTLSHADDSIRQFWID-----HCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAA 214 (426)
T ss_dssp G-------GTTSCSTTCSSHHHHHHHHH-----HHHHHHHHHHHHHHHHTSCEEEEECCCCEESSCCSCSHHHHHHHHHH
T ss_pred c-------ccCCCcccCCCHHHHHHHHH-----HHHHHHHHHHHHHHHhCCcccceeecCCCCCCCCcchHhHHHHHHHH
Confidence 1 12236777889999886531 1122222222333466776666655544666 333444455555
Q ss_pred Hhh
Q 023640 193 LET 195 (279)
Q Consensus 193 l~~ 195 (279)
|.+
T Consensus 215 Lde 217 (426)
T 1d8w_A 215 LDE 217 (426)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 56
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=38.46 E-value=1.8e+02 Score=24.43 Aligned_cols=131 Identities=9% Similarity=-0.005 Sum_probs=68.6
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecC-Cc-cccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhhh--HHHhcc
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAI--NKFHSD 121 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~~~i~~~~~~-g~~~~~~~v~i~TNG~~~~~--~~l~~~ 121 (279)
..++.+.+.+.+..... .|++.|...|. || ++|..++-.++++.+.+. +-+.+ .-+.+.+|.+...+ .+.++.
T Consensus 19 g~iD~~~l~~lv~~li~-~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~p-viaGvg~~~t~~ai~la~~A~~ 96 (294)
T 3b4u_A 19 GTVDIDAMIAHARRCLS-NGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSR-IVTGVLVDSIEDAADQSAEALN 96 (294)
T ss_dssp SSBCHHHHHHHHHHHHH-TTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGG-EEEEECCSSHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCc-EEEeCCCccHHHHHHHHHHHHh
Confidence 45777777777776654 37888887663 88 778877777888877654 21121 33455555554332 222333
Q ss_pred CCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhh---CCeEEEEE-EEeCCCCCcHHHHHHHH
Q 023640 122 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEY-IMLDGVNDEEQHAHQLG 190 (279)
Q Consensus 122 ~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~---~~~v~i~~-vv~~g~nd~~~~l~~l~ 190 (279)
. ..|-.+.+- + .|. +..+-+.+++..+..++.. +.++.+.- .-.-|++-+.+.+.+|+
T Consensus 97 ~-Gadavlv~~---P-~y~------~~~s~~~l~~~f~~va~a~p~~~lPiilYn~P~~tg~~l~~~~~~~La 158 (294)
T 3b4u_A 97 A-GARNILLAP---P-SYF------KNVSDDGLFAWFSAVFSKIGKDARDILVYNIPSVTMVTLSVELVGRLK 158 (294)
T ss_dssp T-TCSEEEECC---C-CSS------CSCCHHHHHHHHHHHHHHHCTTCCCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred c-CCCEEEEcC---C-cCC------CCCCHHHHHHHHHHHHHhcCCCCCcEEEEECcchhCcCCCHHHHHHHH
Confidence 3 244332221 1 000 0013445555554555555 56665432 11225555666666665
No 57
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=38.36 E-value=51 Score=30.78 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcC-----C-----CCHHHHHHHHHHHHhcCCeEEEe
Q 023640 183 EQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFR-----T-----SSDDKVSSFQKILRGSYNIRTTV 239 (279)
Q Consensus 183 ~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~-----~-----~~~e~l~~~~~~l~~~~gi~v~v 239 (279)
...+.+-.+.|+++|+. |.+.|..+......|. . -+.++++++.+.+. +.|+.|.+
T Consensus 171 ~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~~GYd~~dy~~idp~~Gt~~df~~lv~~~H-~~Gi~Vil 237 (583)
T 1ea9_C 171 LQGVIDHLDHLSKLGVNAVYFTPLFKATTNHKYDTEDYFQIDPQFGDKDTLKKLVDLCH-ERGIRVLL 237 (583)
T ss_dssp HHHHHHTHHHHHHHTCSEEEECCCSSCSSSSTTSCSCTTCCCTTTCCHHHHHHHHHHHT-TTTCEEEE
T ss_pred HHHHHHhhHHHHHcCCCEEEECCCccCCCCCCcCcccccccCcccCCHHHHHHHHHHHH-HCCCEEEE
Confidence 33444444777777775 7777755432111111 1 26899999999999 88998754
No 58
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=38.24 E-value=1.9e+02 Score=24.65 Aligned_cols=133 Identities=11% Similarity=0.019 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecC-Cc-cccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhh--hHHHhcc
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHA--INKFHSD 121 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~~~i~~~~~~-g~~~~~~~v~i~TNG~~~~--~~~l~~~ 121 (279)
..++.+.+.+.+...... |++.|.+.|. || |+|..++-.++++.+.+. +-+.+ .-+.+.+|.+... ..+.++.
T Consensus 27 g~iD~~~l~~lv~~li~~-Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvp-viaGvg~~~t~~ai~la~~a~~ 104 (318)
T 3qfe_A 27 DTLDLASQERYYAYLARS-GLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFP-IMAGVGAHSTRQVLEHINDASV 104 (318)
T ss_dssp TEECHHHHHHHHHHHHTT-TCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSC-EEEECCCSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc-CCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCc-EEEeCCCCCHHHHHHHHHHHHH
Q ss_pred CCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeC--CCCCcHHHHHHHHH
Q 023640 122 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLD--GVNDEEQHAHQLGK 191 (279)
Q Consensus 122 ~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~--g~nd~~~~l~~l~~ 191 (279)
. ..|-.+.+ .+..+..- .+-+.+++..+..+...+.++.+.-+=-+ |++-+.+.+.+|++
T Consensus 105 ~-Gadavlv~---~P~y~~kp------~~~~~l~~~f~~ia~a~~lPiilYn~P~~t~g~~l~~~~~~~La~ 166 (318)
T 3qfe_A 105 A-GANYVLVL---PPAYFGKA------TTPPVIKSFFDDVSCQSPLPVVIYNFPGVCNGIDLDSDMITTIAR 166 (318)
T ss_dssp H-TCSEEEEC---CCCC---C------CCHHHHHHHHHHHHHHCSSCEEEEECCC----CCCCHHHHHHHHH
T ss_pred c-CCCEEEEe---CCcccCCC------CCHHHHHHHHHHHHhhCCCCEEEEeCCcccCCCCCCHHHHHHHHh
No 59
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=37.81 E-value=23 Score=26.27 Aligned_cols=73 Identities=8% Similarity=0.046 Sum_probs=44.4
Q ss_pred HhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcEE-EEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEE
Q 023640 163 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVV-NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 238 (279)
Q Consensus 163 ~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i-~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~ 238 (279)
++.|..+....++.-++.|.+..+.++.+.|.+.+.++ .+..+. . ..+..-....++.+++.+.|+ +.|+++.
T Consensus 63 ~~~G~~v~~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~-~-~~~~~~~i~~~d~~~A~~~L~-~~g~~v~ 136 (144)
T 2f06_A 63 KDNHFAVNITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-N-NNVANVVIRPSNMDKCIEVLK-EKKVDLL 136 (144)
T ss_dssp HHTTCCEEEEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-E-TTEEEEEEEESCHHHHHHHHH-HTTCEEE
T ss_pred HHcCCeEeeeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-c-CCcEEEEEEeCCHHHHHHHHH-HcCCEEe
Confidence 34455444333333245567888999999999988876 444442 1 111111123457788888899 7898874
No 60
>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: c.90.1.1
Probab=37.62 E-value=41 Score=27.20 Aligned_cols=56 Identities=14% Similarity=0.059 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCch
Q 023640 49 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV 112 (279)
Q Consensus 49 ~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~ 112 (279)
...+++.+.+.+.... +-+.+.+.+ |+|++. ....++++.+++.| ..+.+...-+.
T Consensus 62 ~~~~~~~~~i~~~~~~-g~~V~~l~~-GDP~i~-~~~~~l~~~l~~~g-----i~v~viPGiSs 117 (235)
T 1ve2_A 62 TPQEAITARLIALARE-GRVVARLKG-GDPMVF-GRGGEEALALRRAG-----IPFEVVPGVTS 117 (235)
T ss_dssp CCHHHHHHHHHHHHHT-TCEEEEEES-BCTTSS-TTHHHHHHHHHHHT-----CCEEEECCCCT
T ss_pred cCHHHHHHHHHHHHHc-CCeEEEEcC-CCCCcc-cCHHHHHHHHHHCC-----CCEEEECCHhH
Confidence 4456777766654432 334556688 999996 55567777777666 56777765543
No 61
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=37.16 E-value=52 Score=29.35 Aligned_cols=21 Identities=10% Similarity=0.262 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHhcCCeEEEe
Q 023640 218 SDDKVSSFQKILRGSYNIRTTV 239 (279)
Q Consensus 218 ~~e~l~~~~~~l~~~~gi~v~v 239 (279)
+.++++++.+.+. +.|+.|.+
T Consensus 68 t~~df~~lv~~aH-~~Gi~Vil 88 (441)
T 1lwj_A 68 SEREFKEMIEAFH-DSGIKVVL 88 (441)
T ss_dssp CHHHHHHHHHHHH-HTTCEEEE
T ss_pred CHHHHHHHHHHHH-HCCCEEEE
Confidence 6899999999999 88998643
No 62
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Probab=36.92 E-value=44 Score=27.07 Aligned_cols=56 Identities=20% Similarity=0.105 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCch
Q 023640 49 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV 112 (279)
Q Consensus 49 ~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~ 112 (279)
.+.+++.+.+.+.... +-+.+.+.+ |+|+++ .....+++.+++.| ..+.+...-+.
T Consensus 59 ~~~~~~~~~i~~~~~~-g~~V~~l~~-GDP~i~-~~~~~l~~~l~~~g-----i~v~viPGiSs 114 (239)
T 1va0_A 59 EKQEEIHRLLLRHARA-HPFVVRLKG-GDPMVF-GRGGEEVLFLLRHG-----VPVEVVPGVTS 114 (239)
T ss_dssp -CHHHHHHHHHHHHHT-SSEEEEEES-BCTTSS-SSHHHHHHHHHHTT-----CCEEEECCCCG
T ss_pred cCHHHHHHHHHHHHHC-CCcEEEEeC-CCCccc-cCHHHHHHHHHHCC-----CcEEEECCcch
Confidence 4556777776654432 345566688 999996 55567777787777 57777765543
No 63
>3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400}
Probab=36.85 E-value=2e+02 Score=24.58 Aligned_cols=156 Identities=14% Similarity=0.158 Sum_probs=86.0
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEE--ec--CCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhh--hHHHh-
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVF--MG--MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHA--INKFH- 119 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~f--sG--~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~--~~~l~- 119 (279)
-.+|++|+++...+..+. |...|.+ =. .|.|++.++.+.+++..+++.- ...+.++|-|.... .+++.
T Consensus 27 lPvTpeEia~~A~~~~~A-GAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~----d~iI~~TTgg~~~~~~eerla~ 101 (311)
T 3e49_A 27 LPVTPDEVAQASIGAAEA-GAAVIHLHARDPRDGRPTQDPAAFAEFLPRIKSNT----DAVINLTTGGSPHMTVEERLRP 101 (311)
T ss_dssp SCCSHHHHHHHHHHHHHH-TCSEEEECEECTTTCCEECCHHHHTTHHHHHHHHC----CCEEEECSCSCTTSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc-CCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhC----CcEEEECCCCCCCCCHHHHHHH
Confidence 358999999999987653 4444444 33 3889999888899999998751 15677777764211 11222
Q ss_pred --ccCCCceEEEEeCCCC-------------------HHH-----HhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEE
Q 023640 120 --SDLPGLNLAVSLHAPV-------------------QDV-----RCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 173 (279)
Q Consensus 120 --~~~~~~~i~iSld~~~-------------------~~~-----~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~ 173 (279)
...+ ++. |++..+ +.. .+.+.. .+++.+.+.+ +.+++.|++..+..
T Consensus 102 ~~~~~P--e~a-Sln~gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~----n~~~~i~~~~-~~~~e~Gi~pE~e~ 173 (311)
T 3e49_A 102 ATHYMP--ELA-SLNMGSMNFGLYPMLERFKEFAHGWEREHLERSRDLVFK----NTFADIEFIL-KTCGGNGTRFEFEC 173 (311)
T ss_dssp HHHHCC--SEE-EEECSCEECCCGGGGGTCCCCSSHHHHHHHHGGGGCEEC----CCHHHHHHHH-HHHHTTTCEEEEEE
T ss_pred HHhcCC--Cee-eecCCCcccccccchhhccccccccchhhcccCCCceec----CCHHHHHHHH-HHHHHcCCeeEEEE
Confidence 2222 222 222111 000 011211 2455666666 55667787776653
Q ss_pred EEeCCCCCcHHHHHHHHHHHhhC--C--cEEEEEecCCCCCCCCcCCCCHHHHHHHHH
Q 023640 174 IMLDGVNDEEQHAHQLGKLLETF--Q--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 227 (279)
Q Consensus 174 vv~~g~nd~~~~l~~l~~~l~~~--~--~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~ 227 (279)
. +..++..+..++++- . ..++++-=.+. . .+.+.+.+..+.+
T Consensus 174 --f-----d~g~l~~~~~l~~~Gl~~~p~~~~~vlGv~~----g-~~~~~~~L~~~~~ 219 (311)
T 3e49_A 174 --Y-----DTSHLYNLAHFVDRKLATPPFFVQTVFGLLG----G-IGPHPEDLAHMRR 219 (311)
T ss_dssp --C-----SHHHHHHHHHHHHTTCSCSSEEEEEEESCTT----S-CCCCHHHHHHHHH
T ss_pred --E-----CHHHHHHHHHHHHcCCCCCCeEEEEEecCCC----C-CCCCHHHHHHHHH
Confidence 2 456777777766551 1 22444321221 2 2467888888873
No 64
>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain; NMR {Escherichia coli}
Probab=36.83 E-value=31 Score=23.62 Aligned_cols=56 Identities=9% Similarity=0.198 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcC
Q 023640 48 NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 109 (279)
Q Consensus 48 ~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TN 109 (279)
.++.+++...+.+......-..|.+.+ +.-..|+.+.+++..+++.|+ .++.+.|.
T Consensus 38 ~v~~~~L~~~l~~~~~~~~~~~V~I~a--D~~~~y~~vv~vmd~l~~aG~----~~v~l~t~ 93 (99)
T 2pfu_A 38 PVTDETMITALNALTEGKKDTTIFFRA--DKTVDYETLMKVMDTLHQAGY----LKIGLVGE 93 (99)
T ss_dssp EECSSSHHHHHHHHSSSCCSSCEEEEE--CTTCCHHHHHHHHHHHHHTCC----CCEECTTC
T ss_pred ecCHHHHHHHHHHHHhcCCCceEEEEc--CCCCCHHHHHHHHHHHHHcCC----CeEEEEec
Confidence 345566766666654321123577776 667778999999999999984 46777664
No 65
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=36.72 E-value=37 Score=23.89 Aligned_cols=27 Identities=0% Similarity=-0.262 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEEcCCchhh
Q 023640 83 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHA 114 (279)
Q Consensus 83 ~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~ 114 (279)
+.+.++++.+++.| ..+.+.||+....
T Consensus 21 ~~~~~~l~~L~~~G-----~~~~i~S~~~~~~ 47 (137)
T 2pr7_A 21 RRWRNLLAAAKKNG-----VGTVILSNDPGGL 47 (137)
T ss_dssp HHHHHHHHHHHHTT-----CEEEEEECSCCGG
T ss_pred ccHHHHHHHHHHCC-----CEEEEEeCCCHHH
Confidence 55789999999888 7899999986543
No 66
>2kl5_A Uncharacterized protein YUTD; structural genomics, protein northeast structural genom consortium (NESG), target SR232, PSI-2; NMR {Bacillus subtilis}
Probab=36.12 E-value=9.2 Score=27.41 Aligned_cols=11 Identities=27% Similarity=0.914 Sum_probs=8.9
Q ss_pred CCcCccCcccc
Q 023640 29 VGCKMGCNFCA 39 (279)
Q Consensus 29 ~gCNl~C~yC~ 39 (279)
.-|||.|+|=-
T Consensus 86 EYCNFGCaYFV 96 (110)
T 2kl5_A 86 EYCNFGCAYFV 96 (110)
T ss_dssp HSSCSSCCEEE
T ss_pred HHccCCCceEE
Confidence 45999999863
No 67
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=35.82 E-value=1.7e+02 Score=23.41 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEE
Q 023640 151 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLI 203 (279)
Q Consensus 151 ~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~ 203 (279)
.+.+.+.+ ++++..|.+..+ +.++ .+.+.++++..++.|+.+.+-
T Consensus 88 ~~~~~~~i-~~A~~lGa~~v~---~~p~----~~~l~~l~~~a~~~gv~l~lE 132 (257)
T 3lmz_A 88 EEEIDRAF-DYAKRVGVKLIV---GVPN----YELLPYVDKKVKEYDFHYAIH 132 (257)
T ss_dssp HHHHHHHH-HHHHHHTCSEEE---EEEC----GGGHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHH-HHHHHhCCCEEE---ecCC----HHHHHHHHHHHHHcCCEEEEe
Confidence 44444444 444555554332 1222 234556666666666655443
No 68
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=35.35 E-value=1.9e+02 Score=23.90 Aligned_cols=166 Identities=11% Similarity=0.099 Sum_probs=84.5
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecCCccccC-HHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhhhHHHhccCCC
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN-YAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPG 124 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~-~~~i~~~i~~~~~~-g~~~~~~~v~i~TNG~~~~~~~l~~~~~~ 124 (279)
+..+.+.+++.+.+..+. |.+-|-+-| |-+... .+.+..++..+++. + ..++|.|.-.-- .+.-++....
T Consensus 20 ~~~~~~~a~~~a~~~v~~-GAdiIDIg~-g~~~v~~~ee~~rvv~~i~~~~~-----~pisIDT~~~~v-~~aAl~a~~G 91 (262)
T 1f6y_A 20 QERDPAPVQEWARRQEEG-GARALDLNV-GPAVQDKVSAMEWLVEVTQEVSN-----LTLCLDSTNIKA-IEAGLKKCKN 91 (262)
T ss_dssp HHTCHHHHHHHHHHHHHH-TCSEEEEBC-C----CHHHHHHHHHHHHHTTCC-----SEEEEECSCHHH-HHHHHHHCSS
T ss_pred hcCCHHHHHHHHHHHHHC-CCcEEEECC-CCCCCChHHHHHHHHHHHHHhCC-----CeEEEeCCCHHH-HHHHHhhCCC
Confidence 345778888888776653 778888888 744443 45677777777765 4 689999863211 2222333223
Q ss_pred ceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCc----HHHHHHHHHHHhhCCcE-
Q 023640 125 LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDE----EQHAHQLGKLLETFQVV- 199 (279)
Q Consensus 125 ~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~----~~~l~~l~~~l~~~~~~- 199 (279)
.++.-|+.+..+ - ++..+ ..+++++..+.+.+.--.|.-.+ .+.+.++++.+.+.|+.
T Consensus 92 a~iINdvs~~~d-~------------~~~~~----~~~a~~~~~vvlmh~~~~G~p~t~~~~~~~~~~~~~~a~~~Gi~~ 154 (262)
T 1f6y_A 92 RAMINSTNAERE-K------------VEKLF----PLAVEHGAALIGLTMNKTGIPKDSDTRLAFAMELVAAADEFGLPM 154 (262)
T ss_dssp CEEEEEECSCHH-H------------HHHHH----HHHHHTTCEEEEESCCSSCSCSSHHHHHHHHHHHHHHHHHHTCCG
T ss_pred CCEEEECCCCcc-c------------HHHHH----HHHHHhCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCc
Confidence 566667765411 1 11222 34456676655443211232112 23345556666666763
Q ss_pred --EEEEecC-CCCCCCCcCCCCHHHHHHHHHHHHhcC--CeEEEecc
Q 023640 200 --VNLIPFN-PIGSVSQFRTSSDDKVSSFQKILRGSY--NIRTTVRK 241 (279)
Q Consensus 200 --i~l~~~~-p~~~~~~~~~~~~e~l~~~~~~l~~~~--gi~v~vr~ 241 (279)
+-+-|-. |++ +.. ....+-++.+ +.+++.+ |+++.+..
T Consensus 155 ~~IilDPg~g~~g--~~~-~~~~~~l~~l-~~l~~~~~pg~pvl~G~ 197 (262)
T 1f6y_A 155 EDLYIDPLILPAN--VAQ-DHAPEVLKTL-QQIKMLADPAPKTVLGL 197 (262)
T ss_dssp GGEEEECCCCCTT--TCT-THHHHHHHHH-HHHHTCCSSCCEEEEEG
T ss_pred ccEEEeCCCCcCC--CCh-HHHHHHHHHH-HHHHHHhCCCCCEEEee
Confidence 5555532 332 111 1123333333 3444235 77776653
No 69
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=35.18 E-value=2e+02 Score=24.15 Aligned_cols=132 Identities=11% Similarity=0.026 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecC-Cc-cccCHHHHHHHHHHHhCC-CC-CCCCCeEEEEcCCchhh--hHHHhc
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PF-QVSPKRITVSTVGIVHA--INKFHS 120 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~~~i~~~~~~-g~-~~~~~~v~i~TNG~~~~--~~~l~~ 120 (279)
..++.+.+.+.++..... |++.|...|. || |+|..++-.++++.+.+. +- +.+ .-+.+.+|.+... ..+.++
T Consensus 23 g~iD~~~l~~lv~~li~~-Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvp-viaGvg~~~t~~ai~la~~a~ 100 (301)
T 3m5v_A 23 GKVDEQSYARLIKRQIEN-GIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVK-VLAGAGSNATHEAVGLAKFAK 100 (301)
T ss_dssp TEECHHHHHHHHHHHHHT-TCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCE-EEEECCCSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc-CCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCe-EEEeCCCCCHHHHHHHHHHHH
Q ss_pred cCCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEE-EEEEEeCCCCCcHHHHHHHHHH
Q 023640 121 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF-IEYIMLDGVNDEEQHAHQLGKL 192 (279)
Q Consensus 121 ~~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~-i~~vv~~g~nd~~~~l~~l~~~ 192 (279)
......+.+-.-.... .+-+.+++..+..++..+.++. .++.-.-|.+-+.+.+.+|++.
T Consensus 101 ~~Gadavlv~~P~y~~------------~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~ 161 (301)
T 3m5v_A 101 EHGADGILSVAPYYNK------------PTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRD 161 (301)
T ss_dssp HTTCSEEEEECCCSSC------------CCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHH
T ss_pred HcCCCEEEEcCCCCCC------------CCHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCCHHHHHHHHhc
No 70
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}
Probab=34.97 E-value=28 Score=31.47 Aligned_cols=20 Identities=5% Similarity=0.283 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHHhcCCeEEE
Q 023640 218 SDDKVSSFQKILRGSYNIRTT 238 (279)
Q Consensus 218 ~~e~l~~~~~~l~~~~gi~v~ 238 (279)
+.++++++.+.+. +.|+.|.
T Consensus 95 t~~df~~lv~~~h-~~Gi~Vi 114 (475)
T 2z1k_A 95 GNEALRHLLEVAH-AHGVRVI 114 (475)
T ss_dssp CHHHHHHHHHHHH-HTTCEEE
T ss_pred CHHHHHHHHHHHH-HCCCEEE
Confidence 5899999999999 8899864
No 71
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=34.71 E-value=2.1e+02 Score=24.25 Aligned_cols=131 Identities=8% Similarity=0.001 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecC-Cc-cccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhh--hHHHhcc
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHA--INKFHSD 121 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~~~i~~~~~~-g~~~~~~~v~i~TNG~~~~--~~~l~~~ 121 (279)
..++.+.+.+.++..... |++.|...|. || |+|..++-.++++.+.+. +-+.+ .-+.+.+|.+... ..+.++.
T Consensus 39 g~iD~~~l~~lv~~li~~-Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvp-ViaGvg~~st~eai~la~~A~~ 116 (314)
T 3qze_A 39 GRLDWDSLAKLVDFHLQE-GTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIP-VIAGTGANSTREAVALTEAAKS 116 (314)
T ss_dssp SCBCHHHHHHHHHHHHHH-TCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSC-EEEECCCSSHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHc-CCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCc-EEEeCCCcCHHHHHHHHHHHHH
Q ss_pred CCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEE-EEEEEeCCCCCcHHHHHHHHH
Q 023640 122 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF-IEYIMLDGVNDEEQHAHQLGK 191 (279)
Q Consensus 122 ~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~-i~~vv~~g~nd~~~~l~~l~~ 191 (279)
.....+.+---.... .+-+.+++-.+..+...+.++. .++.-.-|++-+.+.+.+|++
T Consensus 117 ~Gadavlv~~P~y~~------------~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 175 (314)
T 3qze_A 117 GGADACLLVTPYYNK------------PTQEGMYQHFRHIAEAVAIPQILYNVPGRTSCDMLPETVERLSK 175 (314)
T ss_dssp TTCSEEEEECCCSSC------------CCHHHHHHHHHHHHHHSCSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred cCCCEEEEcCCCCCC------------CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc
No 72
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=34.55 E-value=2.1e+02 Score=24.09 Aligned_cols=131 Identities=11% Similarity=0.062 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecC-Cc-cccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhh--hHHHhcc
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHA--INKFHSD 121 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~~~i~~~~~~-g~~~~~~~v~i~TNG~~~~--~~~l~~~ 121 (279)
..++.+.+.+.+...... |++.|.+.|. || |+|..++-.++++.+.+. +-+++ .-+.+.+|.+... ..+.++.
T Consensus 20 g~iD~~~l~~lv~~li~~-Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvp-viaGvg~~~t~~ai~la~~a~~ 97 (300)
T 3eb2_A 20 GRVRADVMGRLCDDLIQA-GVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVP-VVAGVASTSVADAVAQAKLYEK 97 (300)
T ss_dssp SCBCHHHHHHHHHHHHHT-TCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSC-BEEEEEESSHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHc-CCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCc-EEEeCCCCCHHHHHHHHHHHHH
Q ss_pred CCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEE-EEEEEeCCCCCcHHHHHHHHH
Q 023640 122 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF-IEYIMLDGVNDEEQHAHQLGK 191 (279)
Q Consensus 122 ~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~-i~~vv~~g~nd~~~~l~~l~~ 191 (279)
.....+.+---.... .+-+.+++-.+..+...+.++. .++.-.-|++-+.+.+.+|++
T Consensus 98 ~Gadavlv~~P~y~~------------~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 156 (300)
T 3eb2_A 98 LGADGILAILEAYFP------------LKDAQIESYFRAIADAVEIPVVIYTNPQFQRSDLTLDVIARLAE 156 (300)
T ss_dssp HTCSEEEEEECCSSC------------CCHHHHHHHHHHHHHHCSSCEEEEECTTTCSSCCCHHHHHHHHT
T ss_pred cCCCEEEEcCCCCCC------------CCHHHHHHHHHHHHHHCCCCEEEEECccccCCCCCHHHHHHHHc
No 73
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=34.10 E-value=46 Score=31.13 Aligned_cols=55 Identities=15% Similarity=0.170 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCC----------CCHHHHHHHHHHHHhcCCeEEEe
Q 023640 184 QHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRT----------SSDDKVSSFQKILRGSYNIRTTV 239 (279)
Q Consensus 184 ~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~----------~~~e~l~~~~~~l~~~~gi~v~v 239 (279)
..+.+-.+.|+++|+. |.+.|..+......|.+ -+.++++++.+.+. +.|+.|.+
T Consensus 176 ~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~~GYd~~dy~~idp~~Gt~~df~~lv~~~H-~~Gi~Vil 241 (588)
T 1j0h_A 176 QGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCH-EKGIRVML 241 (588)
T ss_dssp HHHHHTHHHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHH-HTTCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEECCcccCCCCCCcCccccCccCccCCCHHHHHHHHHHHH-HCCCEEEE
Confidence 3343334666666665 66665433211111111 25899999999999 88998743
No 74
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=33.54 E-value=1.4e+02 Score=25.94 Aligned_cols=67 Identities=10% Similarity=0.127 Sum_probs=46.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEEE
Q 023640 171 IEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 238 (279)
Q Consensus 171 i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v~ 238 (279)
+-++.=|+.+++.+.+.++++.+++.|.. +.+..|.|...-..|..+..+.+..+.+..+ +.|+.+.
T Consensus 107 ~~vIAgpcs~es~e~a~~~a~~~k~aGa~~vr~q~fKprTs~~~f~glg~egl~~l~~~~~-e~Gl~~~ 174 (350)
T 1vr6_A 107 FTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAAD-KYGMYVV 174 (350)
T ss_dssp EEEEEECSBCCCHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCCCTHHHHHHHHHHHH-HHTCEEE
T ss_pred eEEEEeCCCcCCHHHHHHHHHHHHHcCCCeeeeeEEeCCCChHhhcCCCHHHHHHHHHHHH-HcCCcEE
Confidence 33444566678899999999999999876 5555566542112355556788888888888 7888753
No 75
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=33.32 E-value=52 Score=30.73 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=31.3
Q ss_pred HHHHHHHHhhCCcE-EEEEecCCCCCCCCcCC----------CCHHHHHHHHHHHHhcCCeEEEe
Q 023640 186 AHQLGKLLETFQVV-VNLIPFNPIGSVSQFRT----------SSDDKVSSFQKILRGSYNIRTTV 239 (279)
Q Consensus 186 l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~----------~~~e~l~~~~~~l~~~~gi~v~v 239 (279)
+.+-.+.|+++|+. |.+.|..+......|.+ -+.++++++.+.+. +.|+.|.+
T Consensus 175 i~~~LdyLk~LGvt~I~L~Pi~~~~~~~GYd~~dy~~id~~~Gt~~dfk~lv~~~H-~~Gi~Vil 238 (585)
T 1wzl_A 175 VIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAH-RRGIKIIL 238 (585)
T ss_dssp HHHTHHHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHH-TTTCEEEE
T ss_pred HHHHhHHHHHcCCCEEEECCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHH-HCCCEEEE
Confidence 33333566666665 66655433211111111 25899999999999 89998743
No 76
>4e84_A D-beta-D-heptose 7-phosphate kinase; LPS-heptose biosynthesis, beta-clAsp dimerization region, PF carbohydrate kinase, phosphorylation; HET: MSE ANP M7B GMZ; 2.60A {Burkholderia cenocepacia} PDB: 4e8w_A* 4e8y_A* 4e8z_A*
Probab=33.02 E-value=2.3e+02 Score=24.16 Aligned_cols=85 Identities=9% Similarity=0.041 Sum_probs=50.5
Q ss_pred CCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhccCCCceEEEEeCCCCHHHHhhhcCC
Q 023640 66 NIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 145 (279)
Q Consensus 66 ~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~~~~~~~i~iSld~~~~~~~~~i~~~ 145 (279)
+.+.+.++|+++..+. .+.++++.+++.| ..+.+++|+... ......++. .++++....+.+.
T Consensus 186 ~~~~v~~~g~~~~~~~--~~~~~~~~a~~~g-----~~v~~D~~~~~~------~~l~~~dil----~pN~~Ea~~l~g~ 248 (352)
T 4e84_A 186 QHDVVLMSDYAKGGLT--HVTTMIEKARAAG-----KAVLVDPKGDDW------ARYRGASLI----TPNRAELREVVGQ 248 (352)
T ss_dssp GCSEEEEECCSSSSCS--SHHHHHHHHHHTT-----CEEEEECCSSCC------STTTTCSEE----CCBHHHHHHHHCC
T ss_pred cCCEEEEeCCCCCCHH--HHHHHHHHHHhcC-----CEEEEECCCcch------hhccCCcEE----cCCHHHHHHHhCC
Confidence 4578999987765443 3678888888887 789999987421 112234543 2344433444331
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCeE
Q 023640 146 ARAFPLEKLMNALKEYQKNSQQKI 169 (279)
Q Consensus 146 ~~~~~~~~i~~~l~~~~~~~~~~v 169 (279)
..+.+.+.+.++++.++.+.+.
T Consensus 249 --~~~~~~~~~~a~~l~~~~g~~~ 270 (352)
T 4e84_A 249 --WKSEDDLRARVANLRAELDIDA 270 (352)
T ss_dssp --CSSHHHHHHHHHHHHHHHTCSE
T ss_pred --CCCHHHHHHHHHHHHHHhCCCE
Confidence 2345667777766554456543
No 77
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=32.34 E-value=2.3e+02 Score=23.90 Aligned_cols=131 Identities=15% Similarity=0.104 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecC-Cc-cccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhh--hHHHhcc
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHA--INKFHSD 121 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~~~i~~~~~~-g~~~~~~~v~i~TNG~~~~--~~~l~~~ 121 (279)
..++.+.+.+.++..... |++.|.+.|. || ++|..++-.++++.+.+. +-+.+ .-+.+.+|.+... ..+.++.
T Consensus 31 g~iD~~~l~~lv~~li~~-Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvp-viaGvg~~~t~~ai~la~~a~~ 108 (304)
T 3l21_A 31 GSLDTATAARLANHLVDQ-GCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRAR-VIAGAGTYDTAHSIRLAKACAA 108 (304)
T ss_dssp SCBCHHHHHHHHHHHHHT-TCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSE-EEEECCCSCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHc-CCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCe-EEEeCCCCCHHHHHHHHHHHHH
Q ss_pred CCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEE-EEEEEeCCCCCcHHHHHHHHH
Q 023640 122 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF-IEYIMLDGVNDEEQHAHQLGK 191 (279)
Q Consensus 122 ~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~-i~~vv~~g~nd~~~~l~~l~~ 191 (279)
.....+.+---.... .+-+.+++..+..+...+.++. .++.-.-|++-+.+.+.+|++
T Consensus 109 ~Gadavlv~~P~y~~------------~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 167 (304)
T 3l21_A 109 EGAHGLLVVTPYYSK------------PPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALAS 167 (304)
T ss_dssp HTCSEEEEECCCSSC------------CCHHHHHHHHHHHHTSCSSCEEEEECHHHHSSCCCHHHHHHHHT
T ss_pred cCCCEEEECCCCCCC------------CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc
No 78
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367}
Probab=32.29 E-value=85 Score=26.58 Aligned_cols=55 Identities=13% Similarity=0.041 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHhccCCCceEEEe-cCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCch
Q 023640 50 SSGEIVEQLVHASRLSNIRNVVFM-GMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV 112 (279)
Q Consensus 50 ~~~ei~~~i~~~~~~~~~~~I~fs-G~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~ 112 (279)
+.++..+.+.+.... |-..+.++ + |+|+++ +.-.++++.+++.| +.+.+...-+.
T Consensus 73 ~~~~~~~~li~~l~~-G~~Va~lsda-GdP~i~-~~g~~lv~~~~~~g-----i~v~viPGiSA 128 (296)
T 3kwp_A 73 NTQERIPQLIAKLKQ-GMQIAQVSDA-GMPSIS-DPGHELVNACIDAH-----IPVVPLPGANA 128 (296)
T ss_dssp THHHHHHHHHHHHHT-TCEEEEECSS-BCTTSS-HHHHHHHHHHHHTT-----CCEEECCCCCH
T ss_pred chhhHhHHHHHHHhc-CceEEEeccC-CCCCCC-CCchHHHHHHHHcC-----CCeeeCCCccc
Confidence 445666666654432 44455666 7 999997 66678889888887 56777765543
No 79
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=32.12 E-value=71 Score=28.13 Aligned_cols=55 Identities=13% Similarity=0.032 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhCCcE-EEEEecCCCCCCC-----CcCC------CCHHHHHHHHHHHHhcCCeEEEe
Q 023640 184 QHAHQLGKLLETFQVV-VNLIPFNPIGSVS-----QFRT------SSDDKVSSFQKILRGSYNIRTTV 239 (279)
Q Consensus 184 ~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~-----~~~~------~~~e~l~~~~~~l~~~~gi~v~v 239 (279)
..+.+-.+.|+++|+. |.+.|..+..... ++.. -+.++++++.+.+. +.|+.|.+
T Consensus 21 ~gi~~~ldyl~~lGv~~i~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~lv~~~h-~~Gi~Vil 87 (405)
T 1ht6_A 21 NMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALH-GKGVQAIA 87 (405)
T ss_dssp HHHHTTHHHHHHTTCCEEEECCCSCBSSTTSSSBCCTTCGGGCTTCCHHHHHHHHHHHH-HTTCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCccccccCCCccCCCHHHHHHHHHHHH-HCCCEEEE
Confidence 3344444666777775 7776655432111 1111 25889999999999 88998643
No 80
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=31.90 E-value=2.3e+02 Score=23.89 Aligned_cols=131 Identities=9% Similarity=0.033 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecC-Cc-cccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhh--hHHHhcc
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHA--INKFHSD 121 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~~~i~~~~~~-g~~~~~~~v~i~TNG~~~~--~~~l~~~ 121 (279)
..++.+.+.+.++..... |++.|.+.|. || |+|..++-.++++.+.+. +-+.+ .-+.+.+|.+... ..+.++.
T Consensus 24 g~iD~~~l~~lv~~li~~-Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvp-viaGvg~~~t~~ai~la~~A~~ 101 (309)
T 3fkr_A 24 GDLDLASQKRAVDFMIDA-GSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVP-VIVTTSHYSTQVCAARSLRAQQ 101 (309)
T ss_dssp SSBCHHHHHHHHHHHHHT-TCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSC-EEEECCCSSHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHc-CCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCc-EEEecCCchHHHHHHHHHHHHH
Q ss_pred CCCceEEEEeCCCCHHHHhhhcCCC---CCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHH
Q 023640 122 LPGLNLAVSLHAPVQDVRCQIMPAA---RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 191 (279)
Q Consensus 122 ~~~~~i~iSld~~~~~~~~~i~~~~---~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~ 191 (279)
. ..|-.+.+ .|.- .+.+-+.+++-.+..++..+.++.+.-+=..|++-+.+.+.+|++
T Consensus 102 ~-Gadavlv~-----------~Pyy~~~~~~s~~~l~~~f~~va~a~~lPiilYn~P~tg~~l~~~~~~~La~ 162 (309)
T 3fkr_A 102 L-GAAMVMAM-----------PPYHGATFRVPEAQIFEFYARVSDAIAIPIMVQDAPASGTALSAPFLARMAR 162 (309)
T ss_dssp T-TCSEEEEC-----------CSCBTTTBCCCHHHHHHHHHHHHHHCSSCEEEEECGGGCCCCCHHHHHHHHH
T ss_pred c-CCCEEEEc-----------CCCCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCHHHHHHHHh
No 81
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=31.48 E-value=2.4e+02 Score=23.89 Aligned_cols=48 Identities=17% Similarity=0.075 Sum_probs=31.9
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecC-Cc-cccCHHHHHHHHHHHhCC
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL 95 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~~~i~~~~~~ 95 (279)
..++.+.+.+.+..... .|++.|.+.|. || |+|..++-.++++.+.+.
T Consensus 28 g~iD~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~ 77 (316)
T 3e96_A 28 GSIDWHHYKETVDRIVD-NGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEY 77 (316)
T ss_dssp CCBCHHHHHHHHHHHHT-TTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-cCCCEEEeCccccCcccCCHHHHHHHHHHHHHH
Confidence 45777777777766654 47888876553 78 777766666666665543
No 82
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=31.30 E-value=1.3e+02 Score=24.89 Aligned_cols=61 Identities=11% Similarity=0.163 Sum_probs=38.3
Q ss_pred eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEE
Q 023640 176 LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT 237 (279)
Q Consensus 176 ~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v 237 (279)
=+..+++.+...++++.+++.|.. +.+..|.|......++.+..+.+..+.+.++ +.|+.+
T Consensus 29 gpc~~~~~e~a~~~a~~l~~~Ga~~vk~~~fkprts~~~~~g~~~egl~~l~~~~~-~~Gl~~ 90 (262)
T 1zco_A 29 GPCSIESREQIMKVAEFLAEVGIKVLRGGAFKPRTSPYSFQGYGEKALRWMREAAD-EYGLVT 90 (262)
T ss_dssp ECSBCCCHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHH-HHTCEE
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCCEEEEEecccCCCcccccCccHHHHHHHHHHHH-HcCCcE
Confidence 344566778888888888888775 4444455532111233344777888888777 778764
No 83
>1wyz_A Putative S-adenosylmethionine-dependent methyltra; northeast structural genomics consortium, BTR28, methyltrans PSI; 2.50A {Bacteroides thetaiotaomicron} SCOP: c.90.1.1
Probab=31.29 E-value=59 Score=26.50 Aligned_cols=52 Identities=12% Similarity=-0.030 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhccCCCceEEEe-cCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCc
Q 023640 52 GEIVEQLVHASRLSNIRNVVFM-GMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGI 111 (279)
Q Consensus 52 ~ei~~~i~~~~~~~~~~~I~fs-G~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~ 111 (279)
++..+.+.+.... |-+.+.++ + |+|++. +...++++.+++.| +.+.+...-+
T Consensus 70 ~~~~~~i~~~~~~-G~~Va~ls~~-GdP~i~-~~g~~l~~~l~~~g-----i~vevIPGiS 122 (242)
T 1wyz_A 70 PEDISGYLKPLAG-GASMGVISEA-GCPAVA-DPGADVVAIAQRQK-----LKVIPLVGPS 122 (242)
T ss_dssp HHHHHHHHHHHHT-TCCEEEECC---------CHHHHHHHHHHHTT-----CCEEECCCCC
T ss_pred HHHHHHHHHHHHc-CCEEEEEecC-CCCccc-CcHHHHHHHHHHCC-----CCEEEeCcHH
Confidence 4555555554432 43445555 8 999995 55567788887777 5677765544
No 84
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=31.09 E-value=54 Score=29.36 Aligned_cols=55 Identities=9% Similarity=0.030 Sum_probs=35.2
Q ss_pred HHHHH-HHHHHHhhCCcE-EEEEecCCCCCC----CCc-----C----CCCHHHHHHHHHHHHhcCCeEEE
Q 023640 183 EQHAH-QLGKLLETFQVV-VNLIPFNPIGSV----SQF-----R----TSSDDKVSSFQKILRGSYNIRTT 238 (279)
Q Consensus 183 ~~~l~-~l~~~l~~~~~~-i~l~~~~p~~~~----~~~-----~----~~~~e~l~~~~~~l~~~~gi~v~ 238 (279)
-..+. ++.+.|+++|+. |.+.|..+.... ..| . --+.++++++.+.+. +.|+.|.
T Consensus 13 ~~gi~~~lldyL~~LGv~~I~l~Pi~~~~~~~~~~~gY~~~~y~idp~~Gt~~dfk~Lv~~aH-~~Gi~Vi 82 (448)
T 1g94_A 13 WQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMVNRCS-AAGVDIY 82 (448)
T ss_dssp HHHHHHHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSCSCSCBTTBCHHHHHHHHHHHH-HTTCEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCcccccccccccCCCCCCHHHHHHHHHHHH-HCCCEEE
Confidence 33444 455677778876 777776543211 122 1 126899999999999 8899864
No 85
>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1
Probab=30.94 E-value=66 Score=27.12 Aligned_cols=54 Identities=22% Similarity=0.137 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchh
Q 023640 49 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH 113 (279)
Q Consensus 49 ~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~ 113 (279)
+.+..+-+.+..+..+ ++.+-|.+ |=-.+.++ +.+.++.+++.| +.+.|-|++.
T Consensus 50 lg~~~~~DlLe~ag~y--ID~lKfg~-GTs~l~~~-l~ekI~l~~~~g-------V~v~~GGTlf 103 (276)
T 1u83_A 50 YPLQFFKDAIAGASDY--IDFVKFGW-GTSLLTKD-LEEKISTLKEHD-------ITFFFGGTLF 103 (276)
T ss_dssp CCHHHHHHHHHHHGGG--CCEEEECT-TGGGGCTT-HHHHHHHHHHTT-------CEEEECHHHH
T ss_pred CCHHHHHHHHHHhhhh--cceEEecC-cchhhhHH-HHHHHHHHHHcC-------CeEeCCcHHH
Confidence 5666665555545443 78899999 99999866 999999999886 6778888653
No 86
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=30.80 E-value=63 Score=23.83 Aligned_cols=66 Identities=15% Similarity=0.257 Sum_probs=32.6
Q ss_pred CceEEEEeccCCcCccCccccCC-----CCCC---ccCCC-HHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHH
Q 023640 19 PRSTLCISSQVGCKMGCNFCATG-----TMGF---KSNLS-SGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVE 87 (279)
Q Consensus 19 ~~~~l~i~~~~gCNl~C~yC~~~-----~~~~---~~~~~-~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~ 87 (279)
.+.++|..++..+ -.|+||..- ..+. ...++ ..++.+.+.+......+- +.|.+ |+..--++.+.+
T Consensus 35 ~~Vvvy~ks~~~~-~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP-~VfI~-G~~iGG~d~l~~ 109 (135)
T 2wci_A 35 NPILLYMKGSPKL-PSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFP-QLWVD-GELVGGCDIVIE 109 (135)
T ss_dssp CSEEEEESBCSSS-BSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSC-EEEET-TEEEESHHHHHH
T ss_pred CCEEEEEEecCCC-CCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcC-EEEEC-CEEEEChHHHHH
Confidence 4567777555554 479999751 1111 11111 134445555443222333 44667 776655555443
No 87
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=30.43 E-value=2.5e+02 Score=23.79 Aligned_cols=131 Identities=10% Similarity=0.085 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecC-Cc-cccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhh--hHHHhcc
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHA--INKFHSD 121 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~~~i~~~~~~-g~~~~~~~v~i~TNG~~~~--~~~l~~~ 121 (279)
..++.+.+.+.++..... |++.|.+.|. || |+|..++-.++++.+.+. +-+.+ .-+.+.+|.+... ..+.++.
T Consensus 40 g~iD~~~l~~lv~~li~~-Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvp-ViaGvg~~~t~~ai~la~~A~~ 117 (315)
T 3na8_A 40 GGLDLPALGRSIERLIDG-GVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVP-TIVSVSDLTTAKTVRRAQFAES 117 (315)
T ss_dssp SSBCHHHHHHHHHHHHHT-TCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSC-BEEECCCSSHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHc-CCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCc-EEEecCCCCHHHHHHHHHHHHh
Q ss_pred CCCceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEE-EEEEEeCCCCCcHHHHHHH-HH
Q 023640 122 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF-IEYIMLDGVNDEEQHAHQL-GK 191 (279)
Q Consensus 122 ~~~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~-i~~vv~~g~nd~~~~l~~l-~~ 191 (279)
.....+.+-.-.... .+-+.+++-.+..++..+.++. .++.-.-|++-+.+.+.+| ++
T Consensus 118 ~Gadavlv~~P~y~~------------~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L~a~ 177 (315)
T 3na8_A 118 LGAEAVMVLPISYWK------------LNEAEVFQHYRAVGEAIGVPVMLYNNPGTSGIDMSVELILRIVRE 177 (315)
T ss_dssp TTCSEEEECCCCSSC------------CCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHH
T ss_pred cCCCEEEECCCCCCC------------CCHHHHHHHHHHHHHhCCCcEEEEeCcchhCcCCCHHHHHHHHhc
No 88
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=28.85 E-value=2.5e+02 Score=23.37 Aligned_cols=129 Identities=9% Similarity=0.024 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHhccCCCceEEEecC-Cc-cccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhh--hHHHhccCC
Q 023640 49 LSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHA--INKFHSDLP 123 (279)
Q Consensus 49 ~~~~ei~~~i~~~~~~~~~~~I~fsG~-GE-Pll~~~~i~~~i~~~~~~-g~~~~~~~v~i~TNG~~~~--~~~l~~~~~ 123 (279)
++.+.+.+.++..... |++.|.+.|. || |+|..++-.++++.+.+. +-+.+ .-+.+.+|.+... ..+.++...
T Consensus 20 iD~~~l~~lv~~li~~-Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvp-viaGvg~~~t~~ai~la~~a~~~G 97 (292)
T 3daq_A 20 VNLEALKAHVNFLLEN-NAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVP-VIAGTGTNDTEKSIQASIQAKALG 97 (292)
T ss_dssp ECHHHHHHHHHHHHHT-TCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSC-EEEECCCSCHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHc-CCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCc-EEEeCCcccHHHHHHHHHHHHHcC
Q ss_pred CceEEEEeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEE-eCCCCCcHHHHHHHHH
Q 023640 124 GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM-LDGVNDEEQHAHQLGK 191 (279)
Q Consensus 124 ~~~i~iSld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv-~~g~nd~~~~l~~l~~ 191 (279)
...+.+..-.... .+-+.+++..+..++..+.++.+.-.= .-|++-+.+.+.+|++
T Consensus 98 adavlv~~P~y~~------------~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 154 (292)
T 3daq_A 98 ADAIMLITPYYNK------------TNQRGLVKHFEAIADAVKLPVVLYNVPSRTNMTIEPETVEILSQ 154 (292)
T ss_dssp CSEEEEECCCSSC------------CCHHHHHHHHHHHHHHHCSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred CCEEEECCCCCCC------------CCHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCHHHHHHHhc
No 89
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=28.48 E-value=1.7e+02 Score=21.27 Aligned_cols=35 Identities=6% Similarity=-0.023 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhccC
Q 023640 83 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDL 122 (279)
Q Consensus 83 ~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~~~ 122 (279)
+...++++.+++.| ..+.+.||+.......+.+..
T Consensus 39 ~~~~~~l~~l~~~g-----~~~~i~T~~~~~~~~~~l~~~ 73 (162)
T 2p9j_A 39 VLDGIGIKLLQKMG-----ITLAVISGRDSAPLITRLKEL 73 (162)
T ss_dssp HHHHHHHHHHHTTT-----CEEEEEESCCCHHHHHHHHHT
T ss_pred ccHHHHHHHHHHCC-----CEEEEEeCCCcHHHHHHHHHc
Confidence 34568999999988 789999999765555555543
No 90
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=28.06 E-value=1.1e+02 Score=25.99 Aligned_cols=44 Identities=11% Similarity=0.048 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE
Q 023640 150 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 199 (279)
Q Consensus 150 ~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~ 199 (279)
+++.-++.+++.+ ++|-...+.-.+ . +.+.+.++.+.+++.|..
T Consensus 158 ~~~~d~~~Lk~Kv-~aGAdf~iTQ~f----f-D~~~~~~f~~~~r~~Gi~ 201 (310)
T 3apt_A 158 SLEADLRHFKAKV-EAGLDFAITQLF----F-NNAHYFGFLERARRAGIG 201 (310)
T ss_dssp CHHHHHHHHHHHH-HHHCSEEEECCC----S-CHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHH-HcCCCEEEeccc----C-CHHHHHHHHHHHHHcCCC
Confidence 4444455553322 345554433332 2 456677777777766654
No 91
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=27.84 E-value=1.4e+02 Score=20.05 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCch
Q 023640 82 YAALVEAVRIMTGLPFQVSPKRITVSTVGIV 112 (279)
Q Consensus 82 ~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~ 112 (279)
-..+.++++.+++.| ..+.+--||..
T Consensus 37 sqdirdiiksmkdng-----kplvvfvngas 62 (112)
T 2lnd_A 37 SQDIRDIIKSMKDNG-----KPLVVFVNGAS 62 (112)
T ss_dssp HHHHHHHHHHHTTCC-----SCEEEEECSCC
T ss_pred hhhHHHHHHHHHhcC-----CeEEEEecCcc
Confidence 467999999999998 56777788854
No 92
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A
Probab=27.79 E-value=73 Score=29.56 Aligned_cols=56 Identities=4% Similarity=0.080 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhCCcE-EEEEecCCCC--CCCCcCC----------CCHHHHHHHHHHHHhcCCeEEEe
Q 023640 183 EQHAHQLGKLLETFQVV-VNLIPFNPIG--SVSQFRT----------SSDDKVSSFQKILRGSYNIRTTV 239 (279)
Q Consensus 183 ~~~l~~l~~~l~~~~~~-i~l~~~~p~~--~~~~~~~----------~~~e~l~~~~~~l~~~~gi~v~v 239 (279)
...+.+.++.|+++|+. |.+.|..+.. ....|.+ -+.++++++.+.+. +.|+.|.+
T Consensus 118 ~~~~~~~l~~l~~lG~~~v~l~Pi~~~~~~~~~GY~~~~~~~~~~~~Gt~~d~~~lv~~~h-~~Gi~Vil 186 (558)
T 3vgf_A 118 FEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGFRKLVDEAH-KKGLGVIL 186 (558)
T ss_dssp HHHHHHTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECGGGTHHHHHHHHHHHHH-HTTCEEEE
T ss_pred HHHHHHHHHHHHHcCCcEEEECCcccCCCCCCcCcccccccccccccCCHHHHHHHHHHHH-HcCCEEEE
Confidence 44455555677777765 7776654332 1112222 14789999999999 88998744
No 93
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=27.32 E-value=44 Score=30.30 Aligned_cols=20 Identities=10% Similarity=0.230 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHhcCCeEEE
Q 023640 218 SDDKVSSFQKILRGSYNIRTT 238 (279)
Q Consensus 218 ~~e~l~~~~~~l~~~~gi~v~ 238 (279)
+.++++++.+.+. +.|+.|.
T Consensus 101 t~~df~~Lv~~aH-~~Gi~Vi 120 (488)
T 2wc7_A 101 GNEAFKELLDAAH-QRNIKVV 120 (488)
T ss_dssp HHHHHHHHHHHHH-HTTCEEE
T ss_pred CHHHHHHHHHHHH-HCCCEEE
Confidence 5789999999999 8899864
No 94
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine, transferase; HET: SAH MES; 1.50A {Pyrococcus horikoshii} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ...
Probab=27.21 E-value=57 Score=26.91 Aligned_cols=53 Identities=13% Similarity=0.036 Sum_probs=34.9
Q ss_pred HHHHHHHHH-HHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCch
Q 023640 51 SGEIVEQLV-HASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV 112 (279)
Q Consensus 51 ~~ei~~~i~-~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~ 112 (279)
.+++.+.+. +... +-+.+.+++ |+|++. .....+++.+++.| ..+.+...-+.
T Consensus 63 ~~~~~~~i~~~~~~--g~~V~~l~~-GDP~i~-~~~~~l~~~l~~~g-----i~veviPGiSs 116 (265)
T 2z6r_A 63 VELNFENIVLPLAK--ENDVAFLTP-GDPLVA-TTHAELRIRAKRAG-----VESYVIHAPSI 116 (265)
T ss_dssp HHHHHHHHTHHHHT--TSCEEEEES-BCTTSS-SSTHHHHHHHHHTT-----CCEEEECCCCH
T ss_pred HHHHHHHHHHHHhC--CCcEEEEEC-CCCcCC-CCHHHHHHHHHHCC-----CcEEEECChhH
Confidence 345555554 4433 335666788 999996 55567788887777 57888876554
No 95
>3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus}
Probab=26.77 E-value=3e+02 Score=23.50 Aligned_cols=158 Identities=13% Similarity=0.050 Sum_probs=89.0
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEE--Eec--CCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhh---h-HHH
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVV--FMG--MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHA---I-NKF 118 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~--fsG--~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~---~-~~l 118 (279)
-.+|++|+++...+..+. |...|. .=. .|.|++.++.+.++++.+++.- .+.+.++|-|.... . +++
T Consensus 27 lPvTpeEia~~A~~~~~A-GAaivHlHvRdp~dG~ps~d~~~y~e~i~~IR~~~----d~iI~~TTgg~~~~~~~~eeR~ 101 (314)
T 3lot_A 27 LPVTPDQIVEEAVKAAEA-GAGMVHIHARDPKDGRPTTDVEVFRYICREIKKQS----DVVINVTTGGGGTLGIPVEERA 101 (314)
T ss_dssp SCCSHHHHHHHHHHHHHH-TCSEEEECEECTTTCCEECCHHHHHHHHHHHHHHC----CCEEEECSSTTGGGTCCHHHHT
T ss_pred CCCCHHHHHHHHHHHHHc-CCCEEEEeecCCCCCCcCCCHHHHHHHHHHHHhcC----CeEEEeCCCCcCCCCCCHHHHH
Confidence 368999999999987653 444343 333 3889999888889999888751 26788888774211 1 121
Q ss_pred ---hccCCCceEEEEeCCCC-----------------HHH--H-----hhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEE
Q 023640 119 ---HSDLPGLNLAVSLHAPV-----------------QDV--R-----CQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 171 (279)
Q Consensus 119 ---~~~~~~~~i~iSld~~~-----------------~~~--~-----~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i 171 (279)
....+ ++. |++..+ +.. + +.+.. .+++.+-+.+ +.+++.|++..+
T Consensus 102 ~~~~~~~P--e~a-Sln~Gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~----N~~~~i~~~~-~~~~e~Gi~pE~ 173 (314)
T 3lot_A 102 KVVPALKP--EIA-TFNMGSMNFAIHPLLKKYKEFKYDWEPEYLEMTRDIVFR----NTFKDLEALS-RIFKENDTKPEL 173 (314)
T ss_dssp THHHHHCC--SEE-EEECCCEECBCTTHHHHCCCCSSTHHHHHHHHGGGCEEC----CCHHHHHHHH-HHHHHHTCEEEE
T ss_pred HHHHhcCC--cee-eecCCCcccccccccccccccccccchhhcccCCCceec----CCHHHHHHHH-HHHHHcCCEEEE
Confidence 12222 221 222110 000 0 11211 2566666666 556678887776
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhhCCc-----EEEEEecCCCCCCCCcCCCCHHHHHHHHHHHH
Q 023640 172 EYIMLDGVNDEEQHAHQLGKLLETFQV-----VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 230 (279)
Q Consensus 172 ~~vv~~g~nd~~~~l~~l~~~l~~~~~-----~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~ 230 (279)
.. . +..++..+..++++ |. .++++-=.+. . .+.+.+.+..+.+.+.
T Consensus 174 e~--f-----d~g~l~~~~~l~~~-Gll~~p~~~~~VlGv~~----G-~~~~p~~L~~~~~~~~ 224 (314)
T 3lot_A 174 EC--Y-----DIGQIYNTAFMFHE-GYLEPPLRLQFIHGILG----G-IGTAVEDVLFMKQTAD 224 (314)
T ss_dssp EE--C-----SHHHHHHHHHHHHT-TCSCSSEEEEEEECCBT----S-CCCCHHHHHHHHHHHH
T ss_pred EE--E-----CHHHHHHHHHHHHC-CCCCCCceEEEEecCCC----C-CCCCHHHHHHHHHHhh
Confidence 53 2 45677777776655 32 2444321121 2 2457888888876653
No 96
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=26.50 E-value=2.7e+02 Score=22.82 Aligned_cols=110 Identities=11% Similarity=0.188 Sum_probs=58.2
Q ss_pred CCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchh--hhHHHhccCCCceEE--EEeCCCCHHHHhh
Q 023640 66 NIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH--AINKFHSDLPGLNLA--VSLHAPVQDVRCQ 141 (279)
Q Consensus 66 ~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~--~~~~l~~~~~~~~i~--iSld~~~~~~~~~ 141 (279)
|.+.|+|.. |..-+ +.+.++.+++.| ....+..|-..+ .++.+.. .+|.. +|++..-.- +.
T Consensus 109 GAd~itvH~--Ea~~~---~~~~i~~ir~~G-----~k~Gvalnp~Tp~e~l~~~l~---~vD~VlvMsV~PGfgG--Q~ 173 (246)
T 3inp_A 109 GATSIVFHP--EASEH---IDRSLQLIKSFG-----IQAGLALNPATGIDCLKYVES---NIDRVLIMSVNPGFGG--QK 173 (246)
T ss_dssp TCSEEEECG--GGCSC---HHHHHHHHHTTT-----SEEEEEECTTCCSGGGTTTGG---GCSEEEEECSCTTC----CC
T ss_pred CCCEEEEcc--ccchh---HHHHHHHHHHcC-----CeEEEEecCCCCHHHHHHHHh---cCCEEEEeeecCCCCC--cc
Confidence 678899876 76644 457888888888 788888886433 1223333 24533 476522110 01
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcEEEEE
Q 023640 142 IMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLI 203 (279)
Q Consensus 142 i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~i~l~ 203 (279)
+. ..++++ ++.++++..+.+..+ ...+..|++. +.+.+ +.+.|+.+-+.
T Consensus 174 fi----~~~l~K-I~~lr~~~~~~~~~~--~I~VDGGI~~--~ti~~----~~~aGAD~~V~ 222 (246)
T 3inp_A 174 FI----PAMLDK-AKEISKWISSTDRDI--LLEIDGGVNP--YNIAE----IAVCGVNAFVA 222 (246)
T ss_dssp CC----TTHHHH-HHHHHHHHHHHTSCC--EEEEESSCCT--TTHHH----HHTTTCCEEEE
T ss_pred cc----hHHHHH-HHHHHHHHHhcCCCe--eEEEECCcCH--HHHHH----HHHcCCCEEEE
Confidence 11 122333 333445544445443 3456788864 33333 44667765443
No 97
>3a3d_A PBP4, penicillin-binding protein 4; DACB, hydrolase; 1.60A {Haemophilus influenzae} PDB: 3a3e_A* 3a3f_A* 3a3i_A*
Probab=26.50 E-value=71 Score=28.91 Aligned_cols=42 Identities=12% Similarity=0.078 Sum_probs=29.6
Q ss_pred eEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCC
Q 023640 69 NVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 110 (279)
Q Consensus 69 ~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG 110 (279)
.+.+.|.|+|++..+.+.++++.+++.|+.-....+.+...-
T Consensus 81 dl~l~gggDp~l~~~~l~~la~~l~~~gI~~I~g~l~~d~s~ 122 (453)
T 3a3d_A 81 NLIVSFTGDPDLTRGQLYSLLAELKKQGIKKINGDLVLDTSV 122 (453)
T ss_dssp CEEEECCCCTTCCHHHHHHHHHHHHHTTCCEECSCEEEECTT
T ss_pred eEEEEeCCCcccCHHHHHHHHHHHHHhCcceecceEEEECcc
Confidence 377777799999988899999999988742111245555443
No 98
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=26.29 E-value=1.3e+02 Score=18.99 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=33.9
Q ss_pred cCCCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCC
Q 023640 47 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP 96 (279)
Q Consensus 47 ~~~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g 96 (279)
..++.+++...+........-..|.+.+ +.-..|..+.+++..+++.|
T Consensus 25 ~~v~~~~L~~~l~~~~~~~~~~~V~I~a--D~~~~y~~vv~vmd~l~~aG 72 (74)
T 2jwk_A 25 EGLTEEMVTQLSRQEFDKDNNTLFLVGG--AKEVPYEEVIKALNLLHLAG 72 (74)
T ss_dssp EEECHHHHHHHHHHHHHHCTTCCEEEEE--CTTSCHHHHHHHHHHHHHTT
T ss_pred cccCHHHHHHHHHHHHhhCCCceEEEEc--CCCCCHHHHHHHHHHHHHcC
Confidence 4567788887777654321123566766 67777899999999999887
No 99
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=26.24 E-value=71 Score=29.07 Aligned_cols=20 Identities=5% Similarity=0.101 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHhcCCeEEE
Q 023640 218 SDDKVSSFQKILRGSYNIRTT 238 (279)
Q Consensus 218 ~~e~l~~~~~~l~~~~gi~v~ 238 (279)
+.++++++.+.+. +.|+.|.
T Consensus 78 t~~dfk~Lv~~aH-~~Gi~Vi 97 (549)
T 4aie_A 78 TMADMDELISKAK-EHHIKIV 97 (549)
T ss_dssp CHHHHHHHHHHHH-HTTCEEE
T ss_pred CHHHHHHHHHHHH-HCCCEEE
Confidence 6889999999999 8899864
No 100
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=26.06 E-value=1.1e+02 Score=23.71 Aligned_cols=38 Identities=11% Similarity=-0.037 Sum_probs=28.3
Q ss_pred ccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCchhhhHHHhccC
Q 023640 79 LNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDL 122 (279)
Q Consensus 79 ll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~~~~~~l~~~~ 122 (279)
.+. +.+.++++.+++.| ..+.|.||+.......+++..
T Consensus 92 ~~~-~g~~~~l~~l~~~g-----~~~~ivS~~~~~~~~~~~~~~ 129 (232)
T 3fvv_A 92 SLT-VQAVDVVRGHLAAG-----DLCALVTATNSFVTAPIARAF 129 (232)
T ss_dssp GCC-HHHHHHHHHHHHTT-----CEEEEEESSCHHHHHHHHHHT
T ss_pred hcC-HHHHHHHHHHHHCC-----CEEEEEeCCCHHHHHHHHHHc
Confidence 344 56789999999988 799999999765555555544
No 101
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=25.86 E-value=1.3e+02 Score=25.24 Aligned_cols=61 Identities=7% Similarity=-0.022 Sum_probs=39.6
Q ss_pred eCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcCCeEE
Q 023640 176 LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT 237 (279)
Q Consensus 176 ~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~gi~v 237 (279)
=++.+++.+...++++.+++.|.. +.+..|.|......|+.+..+.+..+.+..+ +.|+.+
T Consensus 44 gpc~~~~~e~a~~~a~~~k~~ga~~~k~~~~kprts~~~f~g~g~~gl~~l~~~~~-~~Gl~~ 105 (276)
T 1vs1_A 44 GPCSVESWEQVREAALAVKEAGAHMLRGGAFKPRTSPYSFQGLGLEGLKLLRRAGD-EAGLPV 105 (276)
T ss_dssp ECSBCCCHHHHHHHHHHHHHHTCSEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHH-HHTCCE
T ss_pred ecCCCCCHHHHHHHHHHHHHhCCCEEEeEEEeCCCChhhhcCCCHHHHHHHHHHHH-HcCCcE
Confidence 345566788888888888888776 4444455532112344455777888888777 777764
No 102
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=25.80 E-value=2.5e+02 Score=22.30 Aligned_cols=42 Identities=19% Similarity=0.115 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCC
Q 023640 49 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPF 97 (279)
Q Consensus 49 ~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~ 97 (279)
.+.++.++.+.+ .|++.|-+.+ ..+ ....+.++-+.+++.|+
T Consensus 18 ~~~~~~l~~~~~----~G~~~vEl~~-~~~--~~~~~~~~~~~l~~~gl 59 (275)
T 3qc0_A 18 CGFAEAVDICLK----HGITAIAPWR-DQV--AAIGLGEAGRIVRANGL 59 (275)
T ss_dssp CCHHHHHHHHHH----TTCCEEECBH-HHH--HHHCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHH----cCCCEEEecc-ccc--cccCHHHHHHHHHHcCC
Confidence 467777666654 3778888887 432 12345666667777674
No 103
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}
Probab=25.03 E-value=76 Score=28.26 Aligned_cols=21 Identities=0% Similarity=0.090 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHhcCCeEEEe
Q 023640 218 SDDKVSSFQKILRGSYNIRTTV 239 (279)
Q Consensus 218 ~~e~l~~~~~~l~~~~gi~v~v 239 (279)
+.++++++.+.+. +.|+.|.+
T Consensus 82 t~~~~~~lv~~~h-~~Gi~vi~ 102 (449)
T 3dhu_A 82 TLADFKALTDRAH-ELGMKVML 102 (449)
T ss_dssp CHHHHHHHHHHHH-HTTCEEEE
T ss_pred CHHHHHHHHHHHH-HCCCEEEE
Confidence 6899999999999 88998644
No 104
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=25.01 E-value=2.6e+02 Score=22.20 Aligned_cols=71 Identities=15% Similarity=0.261 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHHHHHHHhcC
Q 023640 155 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 233 (279)
Q Consensus 155 ~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~~~~ 233 (279)
++.+++.+++.|..+....... +.+.+.+.+.++..+.+|+. +.+ +|. .+.+.++.+.++ ++
T Consensus 65 ~~~~~~~l~~~gl~i~~~~~~~---~~~~~~~~~~i~~A~~lGa~~v~~---~~~----------~~~~~~l~~~a~-~~ 127 (262)
T 3p6l_A 65 QKEIKELAASKGIKIVGTGVYV---AEKSSDWEKMFKFAKAMDLEFITC---EPA----------LSDWDLVEKLSK-QY 127 (262)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEC---CSSTTHHHHHHHHHHHTTCSEEEE---CCC----------GGGHHHHHHHHH-HH
T ss_pred HHHHHHHHHHcCCeEEEEeccC---CccHHHHHHHHHHHHHcCCCEEEe---cCC----------HHHHHHHHHHHH-Hh
Confidence 3444455666676655433322 23445666777777777664 332 221 133455555565 56
Q ss_pred CeEEEeccc
Q 023640 234 NIRTTVRKQ 242 (279)
Q Consensus 234 gi~v~vr~~ 242 (279)
|+.+.+-+.
T Consensus 128 gv~l~~En~ 136 (262)
T 3p6l_A 128 NIKISVHNH 136 (262)
T ss_dssp TCEEEEECC
T ss_pred CCEEEEEeC
Confidence 666555543
No 105
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=24.62 E-value=1.8e+02 Score=24.05 Aligned_cols=54 Identities=19% Similarity=0.101 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHhccCCCceEEEecCCccccCHH-HHHHHHHHHhCCCCCCCCCeEEEEcCCch
Q 023640 49 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYA-ALVEAVRIMTGLPFQVSPKRITVSTVGIV 112 (279)
Q Consensus 49 ~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~-~i~~~i~~~~~~g~~~~~~~v~i~TNG~~ 112 (279)
+.+..+-+.+.....+ ++.+-|.+ |=-.+.++ .+.+.++.+++.| +.+.|-|++
T Consensus 23 lg~~~~~d~Le~~g~y--ID~lKfg~-Gt~~l~~~~~l~eki~l~~~~g-------V~v~~GGTl 77 (251)
T 1qwg_A 23 LPPKFVEDYLKVCGDY--IDFVKFGW-GTSAVIDRDVVKEKINYYKDWG-------IKVYPGGTL 77 (251)
T ss_dssp CCHHHHHHHHHHHGGG--CSEEEECT-TGGGGSCHHHHHHHHHHHHTTT-------CEEEECHHH
T ss_pred CCHHHHHHHHHHhhhh--cceEEecC-ceeeecCHHHHHHHHHHHHHcC-------CeEECCcHH
Confidence 5665555555544443 78899999 98888743 4888999999886 677888864
No 106
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=24.53 E-value=2.5e+02 Score=22.34 Aligned_cols=102 Identities=9% Similarity=0.067 Sum_probs=47.9
Q ss_pred hHHHhccCCCceEEE-EeCCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCc-------HHHH
Q 023640 115 INKFHSDLPGLNLAV-SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDE-------EQHA 186 (279)
Q Consensus 115 ~~~l~~~~~~~~i~i-Sld~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~-------~~~l 186 (279)
..++.+.....++.+ ++++..+ +... .....+.+.+.+ +++++.|.+..+ +.++.... .+.+
T Consensus 53 ~~~~~~~~~~~gl~~~~~~~~~~-----~~~~-~~~~~~~~~~~i-~~a~~lG~~~v~---~~~g~~~~~~~~~~~~~~l 122 (272)
T 2q02_A 53 YNQVRNLAEKYGLEIVTINAVYP-----FNQL-TEEVVKKTEGLL-RDAQGVGARALV---LCPLNDGTIVPPEVTVEAI 122 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEEEETT-----TTSC-CHHHHHHHHHHH-HHHHHHTCSEEE---ECCCCSSBCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEechhhhc-----cCCc-HHHHHHHHHHHH-HHHHHhCCCEEE---EccCCCchhHHHHHHHHHH
Confidence 445555544445667 5654422 1110 000123333444 445556665432 23442211 5566
Q ss_pred HHHHHHHhhCCcEEEEEecCCCCCCCCcCCCCHHHHHHHHHHHH
Q 023640 187 HQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 230 (279)
Q Consensus 187 ~~l~~~l~~~~~~i~l~~~~p~~~~~~~~~~~~e~l~~~~~~l~ 230 (279)
.++++..++.|+.+.+-+.. . + .....+.+++.++.+.+.
T Consensus 123 ~~l~~~a~~~gv~l~~E~~~-~-~--~~~~~~~~~~~~l~~~v~ 162 (272)
T 2q02_A 123 KRLSDLFARYDIQGLVEPLG-F-R--VSSLRSAVWAQQLIREAG 162 (272)
T ss_dssp HHHHHHHHTTTCEEEECCCC-S-T--TCSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCEEEEEecC-C-C--cccccCHHHHHHHHHHhC
Confidence 67777777777775553322 1 1 112246666666666553
No 107
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=24.32 E-value=2e+02 Score=24.38 Aligned_cols=76 Identities=17% Similarity=0.191 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCCCCHHHHHHH-HHHHHhcCCeEEEeccccccccccccccccccCc
Q 023640 182 EEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSF-QKILRGSYNIRTTVRKQMGQDISGACGQLVVNLP 259 (279)
Q Consensus 182 ~~~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~~~e~l~~~-~~~l~~~~gi~v~vr~~~g~~~~~~cg~~~~~~~ 259 (279)
+.++..++++..++.|+. +-+ ..|.+ ..++.+.+.+. ..+++ ..++++.+.+. |.++.+..-.-+..+|
T Consensus 91 ~t~~ai~la~~A~~~Gadavlv--~~P~y-----~~~s~~~l~~~f~~va~-a~~lPiilYn~-g~~l~~~~~~~La~~p 161 (316)
T 3e96_A 91 ATSTAIELGNAAKAAGADAVMI--HMPIH-----PYVTAGGVYAYFRDIIE-ALDFPSLVYFK-DPEISDRVLVDLAPLQ 161 (316)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEE--CCCCC-----SCCCHHHHHHHHHHHHH-HHTSCEEEEEC-CTTSCTHHHHHHTTCT
T ss_pred CHHHHHHHHHHHHhcCCCEEEE--cCCCC-----CCCCHHHHHHHHHHHHH-hCCCCEEEEeC-CCCCCHHHHHHHHcCC
Confidence 567778888888888876 322 23321 12455555444 44445 55676655543 5555443333333455
Q ss_pred CccCCCC
Q 023640 260 DKISAKS 266 (279)
Q Consensus 260 ~~~~~~~ 266 (279)
.-+.-|-
T Consensus 162 nIvgiKd 168 (316)
T 3e96_A 162 NLVGVKY 168 (316)
T ss_dssp TEEEEEE
T ss_pred CEEEEEe
Confidence 4433343
No 108
>1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken S genomics/proteomics initiative, RSGI, transferase; 2.00A {Aeropyrum pernix} SCOP: c.90.1.1
Probab=24.12 E-value=32 Score=29.07 Aligned_cols=40 Identities=8% Similarity=-0.060 Sum_probs=29.8
Q ss_pred CCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCch
Q 023640 66 NIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV 112 (279)
Q Consensus 66 ~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~ 112 (279)
+-+.+.+++ |+|++. ....++++.+++.| ..+.+..+-+.
T Consensus 83 g~~Vv~L~~-GDP~v~-g~~~~l~~~l~~~g-----i~veviPGiSs 122 (294)
T 1wde_A 83 DAVVAVVTA-GDPMVA-TTHSSLAAEALEAG-----VAVRYIPGVSG 122 (294)
T ss_dssp CCEEEEEES-BCTTSS-SSHHHHHHHHHHTT-----CEEEEECCCCH
T ss_pred CCCEEEEeC-CCCccc-cCHHHHHHHHHHCC-----CCEEEECCHhH
Confidence 445667788 999996 65667788888777 68888876654
No 109
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=24.09 E-value=63 Score=29.21 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCch
Q 023640 49 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV 112 (279)
Q Consensus 49 ~~~~ei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~ 112 (279)
...+++.+.+.+.... |-+.+.+.+ |+|++. ..-.++++.+++.| +.+.+...-+.
T Consensus 277 ~~~~~i~~~l~~~~~~-G~~Vv~L~~-GDP~i~-g~g~~l~~~l~~~g-----i~v~vvPGiSs 332 (457)
T 1pjq_A 277 VPQEEINQILLREAQK-GKRVVRLKG-GDPFIF-GRGGEELETLCHAG-----IPFSVVPGITA 332 (457)
T ss_dssp CTTHHHHHHHHHHHHT-TCEEEEEES-BCTTTS-SSHHHHHTTTTTTT-----CCEEEECCCCH
T ss_pred CCHHHHHHHHHHHHHC-CCcEEEEeC-CCCCcc-CCHHHHHHHHHHCC-----CCEEEeCCHhH
Confidence 4456777777665432 445566788 999996 65667788888777 67887765543
No 110
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=24.08 E-value=1.6e+02 Score=26.88 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHhcCCeEEEe
Q 023640 218 SDDKVSSFQKILRGSYNIRTTV 239 (279)
Q Consensus 218 ~~e~l~~~~~~l~~~~gi~v~v 239 (279)
+.++++++.+.+. +.|+.|.+
T Consensus 91 t~~dfk~Lv~~aH-~~GI~Vil 111 (527)
T 1gcy_A 91 SDAQLRQAASALG-GAGVKVLY 111 (527)
T ss_dssp CHHHHHHHHHHHH-HTTCEEEE
T ss_pred CHHHHHHHHHHHH-HCCCEEEE
Confidence 5899999999999 88998643
No 111
>2ex2_A Penicillin-binding protein 4; cephem, penem, D-Ala alanine-carboxypeptidase, D-alanyl-D-alanine-endopeptidase, hydrolase; 1.55A {Escherichia coli} SCOP: e.3.1.3 PDB: 2ex6_A* 2ex8_A* 2ex9_A* 2exa_A* 2exb_A*
Probab=24.03 E-value=73 Score=28.89 Aligned_cols=29 Identities=10% Similarity=0.015 Sum_probs=24.8
Q ss_pred eEEEecCCccccCHHHHHHHHHHHhCCCC
Q 023640 69 NVVFMGMGEPLNNYAALVEAVRIMTGLPF 97 (279)
Q Consensus 69 ~I~fsG~GEPll~~~~i~~~i~~~~~~g~ 97 (279)
.+.+.|-|+|++..+.+.++++.+++.|+
T Consensus 81 dl~l~gggDp~l~~~~l~~la~~l~~~GI 109 (458)
T 2ex2_A 81 DLVARFGADPTLKRQDIRNMVATLKKSGV 109 (458)
T ss_dssp EEEEECCCCTTCCHHHHHHHHHHHHHTTC
T ss_pred cEEEEeCCCcccCHHHHHHHHHHHHhcCC
Confidence 37777779999998889999999998874
No 112
>2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 3pd2_A* 2hl1_A* 3pd3_A* 3pd4_A* 3pd5_A*
Probab=23.67 E-value=83 Score=23.70 Aligned_cols=49 Identities=16% Similarity=0.276 Sum_probs=27.7
Q ss_pred HHHHHHHhhCCcE-EEEEecCCCCCCCCcCCC--CHHHHHHHHHHHHhcCCeEEE
Q 023640 187 HQLGKLLETFQVV-VNLIPFNPIGSVSQFRTS--SDDKVSSFQKILRGSYNIRTT 238 (279)
Q Consensus 187 ~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~~--~~e~l~~~~~~l~~~~gi~v~ 238 (279)
.++.+.+.+.++. |-+.||--.. .+...| ..+-+..+++.|+ ..|++|.
T Consensus 62 ~eI~~~a~kv~~~~ivlYPyAHLS--s~La~P~~A~~iL~~le~~L~-~~g~eV~ 113 (143)
T 2hl0_A 62 EEISKVAEQVKAENVFVYPFAHLS--SELAKPSVAMDILNRVYQGLK-ERGFNVG 113 (143)
T ss_dssp HHHHHHHHHHTCCEEEEEECGGGC--SSBCCHHHHHHHHHHHHHHHH-HTTCEEE
T ss_pred HHHHHHHHhcCCCEEEEecccccc--CccCChHHHHHHHHHHHHHHH-hCCCeEE
Confidence 3344444555654 7777886652 333322 3445677777777 6677654
No 113
>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A
Probab=23.60 E-value=1.1e+02 Score=28.70 Aligned_cols=56 Identities=9% Similarity=0.053 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhh-CCcE-EEEEecCCCCCCCCcCC----------CCHHHHHHHHHHHHhcCC--e--EEEe
Q 023640 183 EQHAHQLGKLLET-FQVV-VNLIPFNPIGSVSQFRT----------SSDDKVSSFQKILRGSYN--I--RTTV 239 (279)
Q Consensus 183 ~~~l~~l~~~l~~-~~~~-i~l~~~~p~~~~~~~~~----------~~~e~l~~~~~~l~~~~g--i--~v~v 239 (279)
...+.+-.+.|++ +|+. |.+.|..+......|.. -+.++++++.+.+. +.| + .|.+
T Consensus 190 ~~gi~~~LdyLk~~LGvt~I~L~Pi~~~~~~~GYd~~dy~~id~~~Gt~~dfk~LV~~~H-~~G~~I~~~VIl 261 (637)
T 1ji1_A 190 LAGIDQKLGYIKKTLGANILYLNPIFKAPTNHKYDTQDYMAVDPAFGDNSTLQTLINDIH-STANGPKGYLIL 261 (637)
T ss_dssp HHHHHHTHHHHHTTTCCCEEEESCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHH-CSSSSSCCEEEE
T ss_pred HHHHHHhHHHHHhccCCCEEEECCCccCCCCCCcCccchhhhccccCCHHHHHHHHHHHH-hCCCCccceEEE
Confidence 3444444467777 7775 77766543321111111 26899999999999 889 9 8743
No 114
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Probab=22.97 E-value=1.1e+02 Score=27.60 Aligned_cols=21 Identities=5% Similarity=0.145 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHhcCCeEEEe
Q 023640 218 SDDKVSSFQKILRGSYNIRTTV 239 (279)
Q Consensus 218 ~~e~l~~~~~~l~~~~gi~v~v 239 (279)
+.++++++.+.+. +.|+.|.+
T Consensus 80 t~~d~~~Lv~~aH-~~Gi~Vil 100 (488)
T 1wza_A 80 TLEDFHKLVEAAH-QRGIKVII 100 (488)
T ss_dssp CHHHHHHHHHHHH-HTTCEEEE
T ss_pred CHHHHHHHHHHHH-HCCCEEEE
Confidence 6899999999999 88998743
No 115
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=22.75 E-value=1.1e+02 Score=25.54 Aligned_cols=83 Identities=8% Similarity=0.051 Sum_probs=42.0
Q ss_pred HHHHHHHHhhCCeEEEEEEEeCCCC--------CcHHHHHHHHHHHhhCCcEEEEEecCCCCCCC--CcCCCCHHHHHHH
Q 023640 156 NALKEYQKNSQQKIFIEYIMLDGVN--------DEEQHAHQLGKLLETFQVVVNLIPFNPIGSVS--QFRTSSDDKVSSF 225 (279)
Q Consensus 156 ~~l~~~~~~~~~~v~i~~vv~~g~n--------d~~~~l~~l~~~l~~~~~~i~l~~~~p~~~~~--~~~~~~~e~l~~~ 225 (279)
+.+++.+++.|..+..-..-. .++ ...+.+.+.+++.+.+|+..-.++..+. ... .+. ...+.+.++
T Consensus 79 ~~l~~~l~~~GL~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~~~~~~-~~~~~~~~-~~~~~l~~l 155 (305)
T 3obe_A 79 KDYKKMVDDAGLRISSSHLTP-SLREYTKENMPKFDEFWKKATDIHAELGVSCMVQPSLPR-IENEDDAK-VVSEIFNRA 155 (305)
T ss_dssp HHHHHHHHHTTCEEEEEBCCC-SCCCCCGGGHHHHHHHHHHHHHHHHHHTCSEEEECCCCC-CSSHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEeeccc-cccccchhhHHHHHHHHHHHHHHHHHcCCCEEEeCCCCC-CCCHHHHH-HHHHHHHHH
Confidence 344456677787764221111 111 1145677778888888886333443332 000 000 112344455
Q ss_pred HHHHHhcCCeEEEeccc
Q 023640 226 QKILRGSYNIRTTVRKQ 242 (279)
Q Consensus 226 ~~~l~~~~gi~v~vr~~ 242 (279)
.+.++ ++|+.+.+-+.
T Consensus 156 ~~~a~-~~Gv~l~lEn~ 171 (305)
T 3obe_A 156 GEITK-KAGILWGYHNH 171 (305)
T ss_dssp HHHHH-TTTCEEEEECC
T ss_pred HHHHH-HcCCEEEEecC
Confidence 55566 78998777653
No 116
>3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich, membrane protein; 2.20A {Bacteroides thetaiotaomicron} PDB: 3k8m_A* 3k8l_A*
Probab=22.69 E-value=1.1e+02 Score=29.08 Aligned_cols=54 Identities=15% Similarity=0.181 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhCCcE-EEEEecCCCCCCC-----CcC-----CCCHHHHHHHHHHHHhcCCeEEE
Q 023640 184 QHAHQLGKLLETFQVV-VNLIPFNPIGSVS-----QFR-----TSSDDKVSSFQKILRGSYNIRTT 238 (279)
Q Consensus 184 ~~l~~l~~~l~~~~~~-i~l~~~~p~~~~~-----~~~-----~~~~e~l~~~~~~l~~~~gi~v~ 238 (279)
..+.+-++.|+++|+. |.+.|+.+.+... ++. --+.++++++.+.+. +.|+.|.
T Consensus 60 ~g~~~~l~yl~~lGv~~i~l~Pi~~~~~~~gY~~~dy~~i~~~~Gt~~d~~~lv~~~h-~~gi~vi 124 (669)
T 3k8k_A 60 NGVTQKLDYLNQLGVKALWLSPIHPCMSYHGYDVTDYTKVNPQLGTESDFDRLVTEAH-NRGIKIY 124 (669)
T ss_dssp HHHHTTHHHHHTTTCSEEEECCCSSBSSTTCCSBSCTTSCCTTTCCHHHHHHHHHHHH-HTTCEEE
T ss_pred HHHHHHHHHHHHcCCCEEEecccccCCCCCCCCcccccccccccCCHHHHHHHHHHHH-HcCCEEE
Confidence 3444445566666765 6666655432111 111 126899999999999 7898764
No 117
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=22.12 E-value=1.1e+02 Score=20.66 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=20.3
Q ss_pred HHHHHHHHHhc-cCCCceEEEecCCccccCH--HHHHHHHHHH
Q 023640 53 EIVEQLVHASR-LSNIRNVVFMGMGEPLNNY--AALVEAVRIM 92 (279)
Q Consensus 53 ei~~~i~~~~~-~~~~~~I~fsG~GEPll~~--~~i~~~i~~~ 92 (279)
+..+.+.+... ...+-.|.|.+ |+.+.++ +.|.+.++.+
T Consensus 41 ~~~~~~~~~~~G~~tVP~I~i~D-g~~l~~~~~~el~~~L~el 82 (92)
T 2lqo_A 41 AAAEFVGSVNGGNRTVPTVKFAD-GSTLTNPSADEVKAKLVKI 82 (92)
T ss_dssp HHHHHHHHHSSSSSCSCEEEETT-SCEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCEeCEEEEeC-CEEEeCCCHHHHHHHHHHh
Confidence 44555555432 22455666655 8887763 3444444444
No 118
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=21.96 E-value=9.7 Score=35.82 Aligned_cols=38 Identities=13% Similarity=-0.164 Sum_probs=29.1
Q ss_pred eEEEecCCccccCH---HHHHHHHHHHhCCCCCCCCCeEEEEcCCch
Q 023640 69 NVVFMGMGEPLNNY---AALVEAVRIMTGLPFQVSPKRITVSTVGIV 112 (279)
Q Consensus 69 ~I~fsG~GEPll~~---~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~ 112 (279)
.+.+++ ||++... +...+++..+++.| .+..++|++..
T Consensus 232 ~v~~s~-ge~f~~~~g~~~~~~l~~alk~lG-----f~~v~dt~~~a 272 (574)
T 3c8y_A 232 SVRASI-GELFNMGFGVDVTGKIYTALRQLG-----FDKIFDINFGA 272 (574)
T ss_dssp GGGGTG-GGGGTCCSSCCCHHHHHHHHHHHT-----CSEEEEHHHHH
T ss_pred ceeeec-hhhhccccCchHHHHHHHHHHHcC-----CCEEeecccch
Confidence 455677 8999764 45678888888888 57889999854
No 119
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}
Probab=21.92 E-value=1.4e+02 Score=28.20 Aligned_cols=57 Identities=14% Similarity=0.246 Sum_probs=37.0
Q ss_pred cHHHHHHHHHHHhhCCcE-EEEEecCCCC--CCCCcCC----------CCHHHHHHHHHHHHhcCCeEEEe
Q 023640 182 EEQHAHQLGKLLETFQVV-VNLIPFNPIG--SVSQFRT----------SSDDKVSSFQKILRGSYNIRTTV 239 (279)
Q Consensus 182 ~~~~l~~l~~~l~~~~~~-i~l~~~~p~~--~~~~~~~----------~~~e~l~~~~~~l~~~~gi~v~v 239 (279)
+...+.+-++.|+++|+. |.+.|..+.. ....|.+ -+.++++++.+.+. +.|+.|.+
T Consensus 152 ~~~~~~~~L~yl~~lGv~~v~l~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~~~~~lv~~~H-~~Gi~Vil 221 (618)
T 3m07_A 152 TFRAAIAKLPYLAELGVTVIEVMPVAQFGGERGWGYDGVLLYAPHSAYGTPDDFKAFIDAAH-GYGLSVVL 221 (618)
T ss_dssp SHHHHHTTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECTTTCCHHHHHHHHHHHH-HTTCEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCChhccCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHH-HCCCEEEE
Confidence 345555555777888876 7777763321 1112211 26899999999999 88998744
No 120
>4do7_A Amidohydrolase 2; enzyme function initiative, EFI, structural TIM-barrel fold, putative lactonase; 1.70A {Burkholderia multivorans} PDB: 4dlm_A 4dnm_A* 4dlf_A
Probab=21.18 E-value=55 Score=27.46 Aligned_cols=70 Identities=11% Similarity=0.057 Sum_probs=46.2
Q ss_pred HHHHHHHHhccCCCceEEEecCCcc----ccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCch-hhhHHHhccCCCceEE
Q 023640 54 IVEQLVHASRLSNIRNVVFMGMGEP----LNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV-HAINKFHSDLPGLNLA 128 (279)
Q Consensus 54 i~~~i~~~~~~~~~~~I~fsG~GEP----ll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~-~~~~~l~~~~~~~~i~ 128 (279)
..+++.+.. ..++.+|.+.+.++| .++.+.+..+++.+.+.| ..+.+.+.... ..+..+++..+.+.+.
T Consensus 90 ~~~~L~~l~-~~gv~Gir~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----lpv~ih~~~~~l~~l~~ll~~~P~l~iV 163 (303)
T 4do7_A 90 LAERVAEWR-GTKLRGFRHQLQDEADVRAFVDDADFARGVAWLQAND-----YVYDVLVFERQLPDVQAFCARHDAHWLV 163 (303)
T ss_dssp HHHHHTTCC-SSCEEEEECCGGGSSCHHHHHHCHHHHHHHHHHHHTT-----CEEEECCCGGGHHHHHHHHHHCCSSCEE
T ss_pred HHHHHHHHh-hcCceEEEecCcCCCCccccccCHHHHHHHHHHHHCC-----CeEEEecCHHHHHHHHHHHHHCCCCCEE
Confidence 455555544 457778887765543 244456788999999988 68888887653 4456677776655555
Q ss_pred E
Q 023640 129 V 129 (279)
Q Consensus 129 i 129 (279)
+
T Consensus 164 i 164 (303)
T 4do7_A 164 L 164 (303)
T ss_dssp E
T ss_pred E
Confidence 4
No 121
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=21.00 E-value=3.6e+02 Score=23.33 Aligned_cols=90 Identities=14% Similarity=0.065 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCCcHHHHHHHHHHHh---hCCcE-EEEEecCCCCC-CCCcCCCCHHHHHH
Q 023640 150 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE---TFQVV-VNLIPFNPIGS-VSQFRTSSDDKVSS 224 (279)
Q Consensus 150 ~~~~i~~~l~~~~~~~~~~v~i~~vv~~g~nd~~~~l~~l~~~l~---~~~~~-i~l~~~~p~~~-~~~~~~~~~e~l~~ 224 (279)
..+.+++.++++.+..+..+.++.. | .+.++..+.++.+. +.++. +.+.-.-|..+ ...+ ..+.+.+.+
T Consensus 110 G~~~~~~~l~~~~~~~~~pvivsI~---G--~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~gg~~l-~~~~e~~~~ 183 (354)
T 4ef8_A 110 GFDFYLAYAAEQHDYGKKPLFLSMS---G--LSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQV-AYDFDAMRQ 183 (354)
T ss_dssp CHHHHHHHHHHTCCTTTCCEEEEEC---C--SSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCSTTSCCG-GGSHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCCcEEEEec---c--CCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCCCchhh-ccCHHHHHH
Confidence 4677777664322123455555531 2 35778888888777 22332 33332222211 1222 125677777
Q ss_pred HHHHHHhcCCeEEEecccccc
Q 023640 225 FQKILRGSYNIRTTVRKQMGQ 245 (279)
Q Consensus 225 ~~~~l~~~~gi~v~vr~~~g~ 245 (279)
+.+.+++...++|.++-..+.
T Consensus 184 il~av~~~~~~PV~vKi~p~~ 204 (354)
T 4ef8_A 184 CLTAVSEVYPHSFGVKMPPYF 204 (354)
T ss_dssp HHHHHHHHCCSCEEEEECCCC
T ss_pred HHHHHHHhhCCCeEEEecCCC
Confidence 777777445566555543343
No 122
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Probab=20.53 E-value=39 Score=25.86 Aligned_cols=26 Identities=23% Similarity=0.575 Sum_probs=16.2
Q ss_pred ccCccCCCCCceEEEEeccCCcCccCccccC
Q 023640 10 YNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 40 (279)
Q Consensus 10 ~~~~~~p~~~~~~l~i~~~~gCNl~C~yC~~ 40 (279)
.+|.|+|.....++.+ . .+.|+||+.
T Consensus 9 ~lg~p~~~~~~~~ief---~--d~~CP~C~~ 34 (195)
T 3c7m_A 9 VLEKPIPNADKTLIKV---F--SYACPFCYK 34 (195)
T ss_dssp ECSSCCSSCTTEEEEE---E--CTTCHHHHH
T ss_pred eccCCCCCCCcEEEEE---E--eCcCcchhh
Confidence 3565555555545555 1 389999985
No 123
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE; 1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Probab=20.36 E-value=92 Score=25.70 Aligned_cols=50 Identities=8% Similarity=0.072 Sum_probs=31.4
Q ss_pred HHHHHHHHhccCCCceEEEecCCccccCHHHHHHHHHHHhCCCCCCCCCeEEEEcCCch
Q 023640 54 IVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV 112 (279)
Q Consensus 54 i~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~ 112 (279)
+.+.+.+... +-+.+.+++ |+|++. ....++++.+++.| ..+.+...-+.
T Consensus 77 ~~~~i~~~a~--~~~Va~L~~-GDP~iy-~~~~~l~~~~~~~g-----i~vevIPGiSs 126 (268)
T 1vhv_A 77 NSFRLIERAK--SKSVVLLVP-GDPMVA-TTHSAIKLEAERKG-----VKTRIIHGASI 126 (268)
T ss_dssp THHHHHHHHT--TSEEEEEES-BCTTSS-SHHHHHHHHHHHTT-----CCEEEECCCCH
T ss_pred HHHHHHHHhC--CCCEEEEeC-CCCccc-CcHHHHHHHHHHCC-----CcEEEECCccH
Confidence 3444444332 224566777 999996 55556677777777 57888776554
No 124
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=20.25 E-value=58 Score=24.88 Aligned_cols=25 Identities=8% Similarity=0.006 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEEcCCch
Q 023640 83 AALVEAVRIMTGLPFQVSPKRITVSTVGIV 112 (279)
Q Consensus 83 ~~i~~~i~~~~~~g~~~~~~~v~i~TNG~~ 112 (279)
+.+.++++.+++.| ..+.|.||+..
T Consensus 37 ~g~~~~L~~L~~~g-----~~~~i~Tn~~~ 61 (189)
T 3ib6_A 37 KNAKETLEKVKQLG-----FKQAILSNTAT 61 (189)
T ss_dssp TTHHHHHHHHHHTT-----CEEEEEECCSS
T ss_pred cCHHHHHHHHHHCC-----CEEEEEECCCc
Confidence 45789999999998 79999999964
No 125
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=20.11 E-value=79 Score=29.82 Aligned_cols=54 Identities=11% Similarity=0.179 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhCCcE-EEEEecCCCCCCCCcCC----------CCHHHHHHHHHHHHhcCCeEEEe
Q 023640 185 HAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRT----------SSDDKVSSFQKILRGSYNIRTTV 239 (279)
Q Consensus 185 ~l~~l~~~l~~~~~~-i~l~~~~p~~~~~~~~~----------~~~e~l~~~~~~l~~~~gi~v~v 239 (279)
-+.+-.+.|+++|+. |.+.|..+......|.. -+.++++++.+.+. +.|+.|.+
T Consensus 240 Gi~~kLdYLk~LGvt~I~L~Pif~s~~~~GYd~~dy~~idp~~Gt~~df~~LV~~aH-~~GI~VIl 304 (645)
T 4aef_A 240 GIKEKIDHLVNLGINAIYLTPIFSSLTYHGYDIVDYFHVARRLGGDRAFVDLLSELK-RFDIKVIL 304 (645)
T ss_dssp HHHHTHHHHHHHTCCEEEECCCEEESSTTCSSEEEEEEECGGGTCHHHHHHHHHHHH-HTTCEEEE
T ss_pred HHHHhhHHHHHcCCCEEEECCCCCCCCCCCcCccCCCccCcccCCHHHHHHHHHHhh-hcCCEEEE
Confidence 344444677888876 77777544321122211 26899999999999 88998643
Done!