Query 023641
Match_columns 279
No_of_seqs 254 out of 794
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 10:19:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023641.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023641hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.8 3.6E-19 1.2E-23 129.8 3.9 56 57-113 4-59 (60)
2 2d8s_A Cellular modulator of i 99.7 6.4E-17 2.2E-21 123.9 5.3 64 55-118 11-75 (80)
3 2kiz_A E3 ubiquitin-protein li 97.9 1.2E-05 4.1E-10 57.4 4.3 54 54-114 9-64 (69)
4 2ep4_A Ring finger protein 24; 97.9 1.8E-05 6.2E-10 57.3 5.3 52 56-114 12-65 (74)
5 2ect_A Ring finger protein 126 97.8 1.3E-05 4.5E-10 58.6 2.9 54 55-115 11-66 (78)
6 1v87_A Deltex protein 2; ring- 97.7 2.3E-05 7.8E-10 61.2 4.3 51 59-114 25-95 (114)
7 2ecm_A Ring finger and CHY zin 97.7 1.7E-05 5.7E-10 54.0 2.3 48 58-112 4-54 (55)
8 2l0b_A E3 ubiquitin-protein li 97.6 3E-05 1E-09 59.0 3.7 52 55-113 36-89 (91)
9 1x4j_A Ring finger protein 38; 97.6 1.9E-05 6.5E-10 57.5 2.3 52 55-113 19-72 (75)
10 2ct2_A Tripartite motif protei 97.5 7.9E-05 2.7E-09 55.0 4.4 55 55-114 11-69 (88)
11 2ecl_A Ring-box protein 2; RNF 97.5 2.6E-05 9E-10 58.3 1.6 27 85-113 50-76 (81)
12 1iym_A EL5; ring-H2 finger, ub 97.5 2.8E-05 9.5E-10 53.0 1.1 48 58-112 4-54 (55)
13 1chc_A Equine herpes virus-1 r 97.5 7.6E-05 2.6E-09 52.9 3.4 49 58-113 4-52 (68)
14 2yur_A Retinoblastoma-binding 97.5 5.7E-05 2E-09 55.1 2.8 52 55-112 11-63 (74)
15 2ea6_A Ring finger protein 4; 97.4 4.3E-05 1.5E-09 53.9 1.7 52 55-113 11-68 (69)
16 2ecv_A Tripartite motif-contai 97.4 0.00022 7.6E-09 51.9 5.3 54 55-114 15-72 (85)
17 2ecn_A Ring finger protein 141 97.4 6E-05 2.1E-09 53.9 2.0 50 56-114 12-61 (70)
18 2d8t_A Dactylidin, ring finger 97.4 4.1E-05 1.4E-09 55.3 1.1 51 56-114 12-62 (71)
19 2ysl_A Tripartite motif-contai 97.4 9E-05 3.1E-09 53.1 2.8 53 55-113 16-69 (73)
20 2ecw_A Tripartite motif-contai 97.4 0.00018 6.2E-09 52.3 4.5 53 56-114 16-72 (85)
21 2ecy_A TNF receptor-associated 97.3 0.00015 5E-09 51.5 3.1 52 55-113 11-62 (66)
22 2djb_A Polycomb group ring fin 97.3 0.00019 6.4E-09 51.9 3.7 51 56-114 12-63 (72)
23 2csy_A Zinc finger protein 183 97.3 0.0002 7E-09 52.7 3.9 50 55-112 11-60 (81)
24 3ztg_A E3 ubiquitin-protein li 97.2 0.00023 7.7E-09 53.4 3.6 53 54-112 8-61 (92)
25 3ng2_A RNF4, snurf, ring finge 97.2 9.3E-05 3.2E-09 52.7 1.2 53 55-114 6-64 (71)
26 2ct0_A Non-SMC element 1 homol 97.2 0.0002 6.8E-09 54.0 3.1 54 56-114 12-65 (74)
27 1t1h_A Gspef-atpub14, armadill 97.1 0.00026 9E-09 51.5 3.1 53 55-114 4-56 (78)
28 2xeu_A Ring finger protein 4; 97.1 7.3E-05 2.5E-09 51.9 -0.1 50 58-114 2-57 (64)
29 2ecj_A Tripartite motif-contai 97.0 0.00035 1.2E-08 47.7 3.0 47 55-107 11-58 (58)
30 2ysj_A Tripartite motif-contai 97.0 0.0005 1.7E-08 48.1 3.8 47 55-107 16-63 (63)
31 3dpl_R Ring-box protein 1; ubi 97.0 0.00027 9.1E-09 56.2 2.3 48 59-113 37-101 (106)
32 2egp_A Tripartite motif-contai 96.9 0.00025 8.6E-09 51.4 1.0 54 55-114 8-66 (79)
33 1g25_A CDK-activating kinase a 96.7 0.00099 3.4E-08 47.0 2.9 51 58-114 2-56 (65)
34 3lrq_A E3 ubiquitin-protein li 96.6 0.00071 2.4E-08 52.2 1.8 50 57-113 20-70 (100)
35 1e4u_A Transcriptional repress 96.5 0.0026 8.9E-08 47.7 4.5 55 56-114 8-63 (78)
36 1jm7_A BRCA1, breast cancer ty 96.5 0.0017 5.7E-08 50.0 3.4 51 58-114 20-71 (112)
37 4a0k_B E3 ubiquitin-protein li 96.4 0.00055 1.9E-08 55.6 0.3 48 59-113 48-112 (117)
38 3fl2_A E3 ubiquitin-protein li 96.4 0.0018 6E-08 51.4 3.1 49 58-113 51-99 (124)
39 2y43_A E3 ubiquitin-protein li 96.4 0.00092 3.2E-08 50.9 1.3 48 58-113 21-69 (99)
40 4ap4_A E3 ubiquitin ligase RNF 96.2 0.00071 2.4E-08 52.9 -0.1 51 57-114 5-61 (133)
41 2ckl_B Ubiquitin ligase protei 96.2 0.0015 5.1E-08 54.3 1.8 50 57-113 52-102 (165)
42 4ayc_A E3 ubiquitin-protein li 96.2 0.0012 4.1E-08 53.6 1.0 47 59-113 53-99 (138)
43 2ckl_A Polycomb group ring fin 96.0 0.0016 5.6E-08 50.3 1.0 49 57-113 13-62 (108)
44 1z6u_A NP95-like ring finger p 95.9 0.0036 1.2E-07 52.0 2.8 50 58-114 77-126 (150)
45 3hct_A TNF receptor-associated 95.9 0.003 1E-07 49.8 2.1 53 55-114 14-66 (118)
46 3k1l_B Fancl; UBC, ring, RWD, 95.5 0.0051 1.7E-07 59.1 2.2 58 55-115 304-375 (381)
47 1rmd_A RAG1; V(D)J recombinati 95.4 0.0072 2.4E-07 47.2 2.7 51 57-114 21-71 (116)
48 2y1n_A E3 ubiquitin-protein li 95.4 0.0055 1.9E-07 59.0 2.4 50 58-114 331-380 (389)
49 4ap4_A E3 ubiquitin ligase RNF 94.8 0.0042 1.4E-07 48.4 -0.4 51 57-114 70-126 (133)
50 3l11_A E3 ubiquitin-protein li 94.7 0.0036 1.2E-07 48.8 -1.0 50 57-113 13-62 (115)
51 2kr4_A Ubiquitin conjugation f 94.5 0.03 1E-06 42.0 3.8 51 56-114 11-61 (85)
52 2c2l_A CHIP, carboxy terminus 94.3 0.022 7.5E-07 49.6 2.9 50 57-113 206-255 (281)
53 1jm7_B BARD1, BRCA1-associated 93.9 0.01 3.4E-07 46.7 -0.1 47 57-113 20-67 (117)
54 2vje_B MDM4 protein; proto-onc 93.7 0.02 6.7E-07 40.7 1.2 51 56-113 4-56 (63)
55 2vje_A E3 ubiquitin-protein li 93.5 0.027 9.4E-07 40.1 1.7 48 58-113 7-57 (64)
56 2kre_A Ubiquitin conjugation f 93.2 0.054 1.8E-06 42.1 3.1 51 55-113 25-75 (100)
57 4ic3_A E3 ubiquitin-protein li 93.1 0.016 5.4E-07 42.3 -0.1 44 58-113 23-67 (74)
58 2yu4_A E3 SUMO-protein ligase 93.1 0.062 2.1E-06 40.9 3.2 51 54-110 2-59 (94)
59 3hcs_A TNF receptor-associated 93.1 0.038 1.3E-06 45.8 2.1 53 55-114 14-66 (170)
60 1bor_A Transcription factor PM 92.6 0.026 8.8E-07 39.0 0.3 46 57-113 4-49 (56)
61 1wgm_A Ubiquitin conjugation f 92.4 0.083 2.8E-06 40.9 3.1 52 56-114 19-70 (98)
62 3nw0_A Non-structural maintena 92.1 0.082 2.8E-06 47.3 3.1 52 57-114 178-230 (238)
63 3knv_A TNF receptor-associated 92.0 0.019 6.3E-07 47.3 -1.1 50 55-111 27-76 (141)
64 2f42_A STIP1 homology and U-bo 91.5 0.087 3E-06 45.6 2.5 53 55-114 102-154 (179)
65 1wim_A KIAA0161 protein; ring 91.1 0.081 2.8E-06 39.8 1.8 49 58-111 4-62 (94)
66 2ea5_A Cell growth regulator w 90.9 0.2 6.8E-06 36.1 3.6 47 56-114 12-59 (68)
67 2ecg_A Baculoviral IAP repeat- 90.4 0.14 4.8E-06 37.1 2.4 45 58-114 24-69 (75)
68 2lri_C Autoimmune regulator; Z 86.8 0.21 7.1E-06 36.5 1.2 53 53-111 6-60 (66)
69 3t6p_A Baculoviral IAP repeat- 83.2 0.16 5.3E-06 47.9 -1.2 46 57-114 293-339 (345)
70 3htk_C E3 SUMO-protein ligase 78.0 0.96 3.3E-05 41.6 2.2 53 56-114 178-233 (267)
71 2bay_A PRE-mRNA splicing facto 77.1 0.95 3.2E-05 32.0 1.5 46 60-113 4-50 (61)
72 1weo_A Cellulose synthase, cat 76.9 3.5 0.00012 32.4 4.8 54 57-114 14-71 (93)
73 2yho_A E3 ubiquitin-protein li 76.8 0.49 1.7E-05 34.9 -0.1 45 58-114 17-62 (79)
74 1weu_A Inhibitor of growth fam 74.6 1.6 5.4E-05 33.9 2.3 54 53-112 30-87 (91)
75 2ku3_A Bromodomain-containing 62.8 1.2 4.1E-05 32.9 -0.6 52 56-110 13-66 (71)
76 2l43_A N-teminal domain from h 61.1 1.2 4.2E-05 34.0 -0.9 56 55-112 21-77 (88)
77 2ysm_A Myeloid/lymphoid or mix 60.4 1.3 4.4E-05 34.5 -0.9 51 55-108 3-55 (111)
78 1f62_A Transcription factor WS 58.7 1.7 6E-05 29.2 -0.3 46 61-109 2-49 (51)
79 1wen_A Inhibitor of growth fam 56.3 2.7 9.1E-05 30.9 0.3 52 54-111 11-66 (71)
80 2k16_A Transcription initiatio 56.2 1.4 4.8E-05 32.0 -1.2 54 56-112 15-70 (75)
81 2l5u_A Chromodomain-helicase-D 47.5 4.3 0.00015 28.6 0.2 49 56-110 8-58 (61)
82 2jwa_A Receptor tyrosine-prote 42.6 33 0.0011 23.3 4.0 30 221-251 13-42 (44)
83 2vnf_A ING 4, P29ING4, inhibit 38.4 1.4 4.7E-05 31.3 -3.6 50 54-109 5-58 (60)
84 2lbm_A Transcriptional regulat 37.2 15 0.00053 30.5 2.1 47 56-108 60-115 (142)
85 3u5n_A E3 ubiquitin-protein li 36.1 3 0.0001 35.8 -2.5 50 58-113 6-57 (207)
86 2yt5_A Metal-response element- 34.7 2.9 0.0001 29.5 -2.4 52 56-110 3-61 (66)
87 2yql_A PHD finger protein 21A; 34.2 2.3 7.9E-05 29.4 -2.9 48 56-109 6-55 (56)
88 2e6r_A Jumonji/ARID domain-con 34.1 2.4 8.1E-05 32.5 -3.2 52 56-110 13-66 (92)
89 2lv9_A Histone-lysine N-methyl 33.2 7.1 0.00024 30.1 -0.6 50 55-108 24-74 (98)
90 3ql9_A Transcriptional regulat 31.0 17 0.0006 29.7 1.4 47 56-108 54-109 (129)
91 2ri7_A Nucleosome-remodeling f 30.9 7.6 0.00026 32.1 -0.8 51 57-111 6-60 (174)
92 3v43_A Histone acetyltransfera 30.8 18 0.0006 28.2 1.3 48 58-108 4-62 (112)
93 2ko5_A Ring finger protein Z; 30.1 16 0.00054 29.0 0.9 54 53-115 22-75 (99)
94 1jb0_I Photosystem 1 reaction 28.2 50 0.0017 21.9 3.0 34 212-245 3-36 (38)
95 4gne_A Histone-lysine N-methyl 27.6 10 0.00035 30.1 -0.6 49 54-108 10-60 (107)
96 1p1p_A AA-conotoxin PIVA; neur 27.3 20 0.00068 21.7 0.8 17 72-88 8-24 (26)
97 2vpb_A Hpygo1, pygopus homolog 27.2 19 0.00066 25.8 0.9 34 56-92 5-40 (65)
98 2g6q_A Inhibitor of growth pro 27.1 2.9 9.8E-05 29.9 -3.5 50 54-109 6-59 (62)
99 1wep_A PHF8; structural genomi 26.8 38 0.0013 24.6 2.5 53 57-113 10-66 (79)
100 3kv5_D JMJC domain-containing 25.7 7.8 0.00027 38.0 -1.9 54 57-114 35-92 (488)
101 1wev_A Riken cDNA 1110020M19; 25.2 5.3 0.00018 30.2 -2.6 53 58-113 15-75 (88)
102 3o36_A Transcription intermedi 25.0 6.9 0.00024 32.8 -2.2 49 58-112 3-53 (184)
103 2jmi_A Protein YNG1, ING1 homo 24.3 6 0.0002 30.5 -2.4 51 54-110 21-76 (90)
104 1znf_A 31ST zinc finger from X 23.7 26 0.0009 18.2 0.9 12 102-113 2-13 (27)
105 1ard_A Yeast transcription fac 22.2 29 0.00099 18.2 0.8 12 102-113 3-14 (29)
106 1mm2_A MI2-beta; PHD, zinc fin 21.9 8.6 0.00029 27.1 -1.8 48 57-110 7-56 (61)
107 1wem_A Death associated transc 21.7 29 0.001 25.0 1.0 51 59-113 16-73 (76)
108 3c6w_A P28ING5, inhibitor of g 21.5 4.2 0.00014 28.7 -3.5 48 56-109 6-57 (59)
109 2lvu_A Zinc finger and BTB dom 25.8 21 0.00073 18.6 0.0 13 102-114 3-15 (26)
110 1wew_A DNA-binding family prot 20.3 80 0.0027 22.9 3.2 53 54-111 11-73 (78)
111 2m0f_A Zinc finger and BTB dom 20.2 30 0.001 18.1 0.6 12 102-113 3-14 (29)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.75 E-value=3.6e-19 Score=129.79 Aligned_cols=56 Identities=34% Similarity=0.777 Sum_probs=50.8
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 023641 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (279)
Q Consensus 57 ~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~ 113 (279)
++...||||+++.+ ++|+.||+|+||+||||+.||++|++.+++.+||+|+++|+.
T Consensus 4 ~~~~~CrIC~~~~~-~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELG-NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECS-CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCC-CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 45679999998754 478999999999999999999999999999999999999975
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=6.4e-17 Score=123.85 Aligned_cols=64 Identities=34% Similarity=0.849 Sum_probs=55.1
Q ss_pred CCCCCCeeeEeccCCC-CCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccCccCC
Q 023641 55 SPSKLVECRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPGYTAP 118 (279)
Q Consensus 55 ~~~~~~~CRIC~ee~~-d~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~~yt~p 118 (279)
.+.+...|+||+++.+ +++++.||+|+|+++++|+.||++|+..+++.+|++|+++|......+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~ 75 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLS 75 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSC
T ss_pred CCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccC
Confidence 3455678999998763 467999999999999999999999999999899999999998775443
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.87 E-value=1.2e-05 Score=57.45 Aligned_cols=54 Identities=26% Similarity=0.625 Sum_probs=41.3
Q ss_pred CCCCCCCeeeEeccCCCC--CCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 023641 54 SSPSKLVECRICHEEDED--SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (279)
Q Consensus 54 ~~~~~~~~CRIC~ee~~d--~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~~ 114 (279)
+.......|.||++.-.+ .....||. +..|..|+.+|++.++ .|++|+..+...
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCM-----HLFHQVCVDQWLITNK--KCPICRVDIEAQ 64 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTS-----CEEEHHHHHHHHHHCS--BCTTTCSBSCSC
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCC-----CHHHHHHHHHHHHcCC--CCcCcCccccCc
Confidence 344567789999987542 34567875 5789999999998754 699999988754
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.87 E-value=1.8e-05 Score=57.25 Aligned_cols=52 Identities=23% Similarity=0.525 Sum_probs=39.3
Q ss_pred CCCCCeeeEeccCCCCCC--cccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 023641 56 PSKLVECRICHEEDEDSN--MEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (279)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~--Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~~ 114 (279)
......|.||++...+.. ...||. +..|..|+.+|++.+. .|++|++++...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~f~~~Ci~~~~~~~~--~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCK-----HAFHRKCLIKWLEVRK--VCPLCNMPVLQL 65 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTT-----EEEEHHHHHHHHHHCS--BCTTTCCBCSSC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCC-----CEecHHHHHHHHHcCC--cCCCcCcccccc
Confidence 345678999999864332 234764 6799999999998764 899999988643
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.75 E-value=1.3e-05 Score=58.57 Aligned_cols=54 Identities=22% Similarity=0.665 Sum_probs=40.8
Q ss_pred CCCCCCeeeEeccCCCCC--CcccccccCCCcccccHHHHHHHHHhcCCccccccccccccCc
Q 023641 55 SPSKLVECRICHEEDEDS--NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPGY 115 (279)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~--~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~~y 115 (279)
.......|.||++.-.+. ....||. +..|..|+.+|++.+ ..|++|+.++...-
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCN-----HLFHDSCIVPWLEQH--DSCPVCRKSLTGQN 66 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTS-----CEEETTTTHHHHTTT--CSCTTTCCCCCCSC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCC-----CeecHHHHHHHHHcC--CcCcCcCCccCCcc
Confidence 345577899999886432 2346765 679999999999654 58999999997653
No 6
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.74 E-value=2.3e-05 Score=61.19 Aligned_cols=51 Identities=24% Similarity=0.468 Sum_probs=38.8
Q ss_pred CCeeeEeccCCCCC-------------C-c---ccccccCCCcccccHHHHHHHHHh---cCCccccccccccccC
Q 023641 59 LVECRICHEEDEDS-------------N-M---EIPCSCCGSLKYAHRKCVQRWCNE---KGDTTCEICREQYNPG 114 (279)
Q Consensus 59 ~~~CRIC~ee~~d~-------------~-L---i~PC~C~GSlkyVH~~CL~~W~~~---k~~~~CEiCk~~Y~~~ 114 (279)
...|-||++.-.+. + . ..||. +..|..||.+|+.. +....|++|+..|...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 35899999874321 1 1 56776 68999999999975 4567999999999754
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.68 E-value=1.7e-05 Score=54.04 Aligned_cols=48 Identities=25% Similarity=0.587 Sum_probs=38.2
Q ss_pred CCCeeeEeccCCCC---CCcccccccCCCcccccHHHHHHHHHhcCCccccccccccc
Q 023641 58 KLVECRICHEEDED---SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (279)
Q Consensus 58 ~~~~CRIC~ee~~d---~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~ 112 (279)
....|.||++.-.+ .....||. +..|..|+.+|++.+ ..|++|++++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 45689999987532 35678875 689999999999887 68999998764
No 8
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.65 E-value=3e-05 Score=58.98 Aligned_cols=52 Identities=33% Similarity=0.816 Sum_probs=40.3
Q ss_pred CCCCCCeeeEeccCCCCC--CcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 023641 55 SPSKLVECRICHEEDEDS--NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (279)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~--~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~ 113 (279)
...+...|-||+++..++ ....||. +..|..|+.+|++.+ ..|++|+.++.+
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQKS--GTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTT-----EEEEHHHHHHHHTTT--CBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCC-----ChHHHHHHHHHHHcC--CcCcCcCccCCC
Confidence 345678999999875432 3457865 689999999999754 489999988764
No 9
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.64 E-value=1.9e-05 Score=57.53 Aligned_cols=52 Identities=33% Similarity=0.732 Sum_probs=40.3
Q ss_pred CCCCCCeeeEeccCCCCC--CcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 023641 55 SPSKLVECRICHEEDEDS--NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (279)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~--~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~ 113 (279)
...+...|-||++...+. ....||. +..|..|+.+|++.+ ..|++|++++.+
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~~--~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCN-----HEFHAKCVDKWLKAN--RTCPICRADSGP 72 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTT-----EEEETTHHHHHHHHC--SSCTTTCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECCC-----CHhHHHHHHHHHHcC--CcCcCcCCcCCC
Confidence 345677999999886433 2567875 679999999999875 489999988865
No 10
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.53 E-value=7.9e-05 Score=55.03 Aligned_cols=55 Identities=18% Similarity=0.473 Sum_probs=42.9
Q ss_pred CCCCCCeeeEeccCCCC---CCcccccccCCCcccccHHHHHHHHHhc-CCccccccccccccC
Q 023641 55 SPSKLVECRICHEEDED---SNMEIPCSCCGSLKYAHRKCVQRWCNEK-GDTTCEICREQYNPG 114 (279)
Q Consensus 55 ~~~~~~~CRIC~ee~~d---~~Li~PC~C~GSlkyVH~~CL~~W~~~k-~~~~CEiCk~~Y~~~ 114 (279)
...+...|-||++...+ .+...||. +..|..|+.+|++.+ +...|++|+..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hccCCCCCccCCccccccCCCeEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 44567789999988643 25667875 688999999999876 567999999988653
No 11
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.51 E-value=2.6e-05 Score=58.33 Aligned_cols=27 Identities=19% Similarity=0.719 Sum_probs=23.7
Q ss_pred ccccHHHHHHHHHhcCCcccccccccccc
Q 023641 85 KYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (279)
Q Consensus 85 kyVH~~CL~~W~~~k~~~~CEiCk~~Y~~ 113 (279)
+..|..||.+|++.++ +|++|++++..
T Consensus 50 H~FH~~Ci~~Wl~~~~--~CP~CR~~~~~ 76 (81)
T 2ecl_A 50 HSFHNCCMSLWVKQNN--RCPLCQQDWVV 76 (81)
T ss_dssp CEEEHHHHHHHTTTCC--BCTTTCCBCCE
T ss_pred CccChHHHHHHHHhCC--CCCCcCCCcch
Confidence 6899999999998764 89999998864
No 12
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.47 E-value=2.8e-05 Score=53.05 Aligned_cols=48 Identities=35% Similarity=0.749 Sum_probs=36.3
Q ss_pred CCCeeeEeccCCCC--CCcccc-cccCCCcccccHHHHHHHHHhcCCccccccccccc
Q 023641 58 KLVECRICHEEDED--SNMEIP-CSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (279)
Q Consensus 58 ~~~~CRIC~ee~~d--~~Li~P-C~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~ 112 (279)
+...|-||++.-.+ .....| |. +..|..|+.+|++. ...|++|++++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCG-----HGFHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSC-----CEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCC-----CcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 45689999988543 344555 64 57999999999976 458999998764
No 13
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.46 E-value=7.6e-05 Score=52.93 Aligned_cols=49 Identities=27% Similarity=0.722 Sum_probs=39.4
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 023641 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (279)
Q Consensus 58 ~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~ 113 (279)
....|.||++...+.....||. +..|..|+.+|+..+ ..|++|+.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCL-----HAFCYVCITRWIRQN--PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTT-----EEESTTHHHHHHHHS--CSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCC-----CeeHHHHHHHHHhCc--CcCcCCChhhHh
Confidence 4568999998876544778876 578999999999765 589999988864
No 14
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.46 E-value=5.7e-05 Score=55.13 Aligned_cols=52 Identities=23% Similarity=0.498 Sum_probs=42.0
Q ss_pred CCCCCCeeeEeccCCCCCCcccc-cccCCCcccccHHHHHHHHHhcCCccccccccccc
Q 023641 55 SPSKLVECRICHEEDEDSNMEIP-CSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (279)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~Li~P-C~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~ 112 (279)
...+...|.||++.-.+ +...| |. +..|+.|+.+|+..++...|++|+.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 11 PIPDELLCLICKDIMTD-AVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CSCGGGSCSSSCCCCTT-CEECSSSC-----CEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cCCCCCCCcCCChHHhC-CeEcCCCC-----CHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 34567789999887653 66777 75 6789999999999888789999999754
No 15
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.43 E-value=4.3e-05 Score=53.92 Aligned_cols=52 Identities=25% Similarity=0.580 Sum_probs=39.3
Q ss_pred CCCCCCeeeEeccCCCC----C--CcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 023641 55 SPSKLVECRICHEEDED----S--NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (279)
Q Consensus 55 ~~~~~~~CRIC~ee~~d----~--~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~ 113 (279)
...+...|-||++...+ . ....||. +..|..|+.+|++. ...|++|+.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHH--CSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHc--CCCCCCCCCccCc
Confidence 34567789999987421 1 2567875 68999999999987 4589999998753
No 16
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.39 E-value=0.00022 Score=51.86 Aligned_cols=54 Identities=26% Similarity=0.639 Sum_probs=42.5
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHh----cCCccccccccccccC
Q 023641 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE----KGDTTCEICREQYNPG 114 (279)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~----k~~~~CEiCk~~Y~~~ 114 (279)
...+...|.||++...+ +...||. +..|..|+.+|+.. .+...|++|+..+...
T Consensus 15 ~~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQ-PLSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCCCTTTCSCCSS-CBCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred HccCCCCCCCCCcccCC-ceeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 34556789999988654 5566875 57899999999987 3578999999998753
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.38 E-value=6e-05 Score=53.88 Aligned_cols=50 Identities=30% Similarity=0.773 Sum_probs=40.8
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 023641 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (279)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~~ 114 (279)
..+...|.||++...+ ...||. +..|..|+.+|+. ....|++|++++...
T Consensus 12 ~~~~~~C~IC~~~~~~--~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD--LILPCA-----HSFCQKCIDKWSD--RHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCSSSCCSCCS--EEETTT-----EEECHHHHHHSSC--CCSSCHHHHHCTTCC
T ss_pred CCCCCCCeeCCcCccC--cccCCC-----CcccHHHHHHHHH--CcCcCCCcCCcccCC
Confidence 3457789999998765 778885 6799999999997 467899999988743
No 18
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.38 E-value=4.1e-05 Score=55.29 Aligned_cols=51 Identities=22% Similarity=0.488 Sum_probs=40.4
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 023641 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (279)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~~ 114 (279)
..+...|.||++...+ +...||. +..|..|+.+|+..+ ..|++|+..+...
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 12 SLTVPECAICLQTCVH-PVSLPCK-----HVFCYLCVKGASWLG--KRCALCRQEIPED 62 (71)
T ss_dssp SSSCCBCSSSSSBCSS-EEEETTT-----EEEEHHHHHHCTTCS--SBCSSSCCBCCHH
T ss_pred CCCCCCCccCCcccCC-CEEccCC-----CHHHHHHHHHHHHCC--CcCcCcCchhCHh
Confidence 3456789999987643 5667875 679999999999754 6899999998754
No 19
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.36 E-value=9e-05 Score=53.12 Aligned_cols=53 Identities=21% Similarity=0.434 Sum_probs=41.8
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHh-cCCcccccccccccc
Q 023641 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE-KGDTTCEICREQYNP 113 (279)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~-k~~~~CEiCk~~Y~~ 113 (279)
...+...|.||++...+ +...||. +..|..|+.+|++. ++...|++|+.++..
T Consensus 16 ~~~~~~~C~IC~~~~~~-~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 16 KLQEEVICPICLDILQK-PVTIDCG-----HNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCBCTTTCSBCSS-EEECTTC-----CEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred hCccCCEeccCCcccCC-eEEcCCC-----ChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 44567899999987653 5556775 67999999999985 457799999998864
No 20
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.36 E-value=0.00018 Score=52.34 Aligned_cols=53 Identities=26% Similarity=0.566 Sum_probs=42.1
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhc----CCccccccccccccC
Q 023641 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEK----GDTTCEICREQYNPG 114 (279)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~k----~~~~CEiCk~~Y~~~ 114 (279)
..+...|.||++...+ +...||. +..|..|+.+|+..+ +...|++|+..+...
T Consensus 16 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 16 IKEEVTCPICLELLKE-PVSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CCTTTSCTTTCSCCSS-CEECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CccCCCCcCCChhhCc-ceeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 3456789999987643 5677875 578999999999884 478999999988753
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.28 E-value=0.00015 Score=51.50 Aligned_cols=52 Identities=15% Similarity=0.363 Sum_probs=40.3
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 023641 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (279)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~ 113 (279)
...+...|.||++.-.+ +...||. +..|..|+.+|++ ++...|++|+.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCS-PKQTECG-----HRFCESCMAALLS-SSSPKCTACQESIVK 62 (66)
T ss_dssp SCCCCEECTTTCCEESS-CCCCSSS-----CCCCHHHHHHHHT-TSSCCCTTTCCCCCT
T ss_pred cCCcCCCCCCCChHhcC-eeECCCC-----CHHHHHHHHHHHH-hCcCCCCCCCcCCCh
Confidence 34567899999877543 5556776 5689999999997 456689999998864
No 22
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.28 E-value=0.00019 Score=51.87 Aligned_cols=51 Identities=18% Similarity=0.356 Sum_probs=40.0
Q ss_pred CCCCCeeeEeccCCCCCCcc-cccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 023641 56 PSKLVECRICHEEDEDSNME-IPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (279)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~Li-~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~~ 114 (279)
..+...|.||++.-.+ +.. .||. +..|..|+.+|++. ...|++|+..+...
T Consensus 12 ~~~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 12 LTPYILCSICKGYLID-ATTITECL-----HTFCKSCIVRHFYY--SNRCPKCNIVVHQT 63 (72)
T ss_dssp CCGGGSCTTTSSCCSS-CEECSSSC-----CEECHHHHHHHHHH--CSSCTTTCCCCCSS
T ss_pred cCCCCCCCCCChHHHC-cCEECCCC-----CHHHHHHHHHHHHc--CCcCCCcCcccCcc
Confidence 3556789999887654 443 5886 57899999999976 46899999998754
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.27 E-value=0.0002 Score=52.69 Aligned_cols=50 Identities=18% Similarity=0.459 Sum_probs=39.9
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccc
Q 023641 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (279)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~ 112 (279)
.......|.||++.-.+ +...||. +..|..|+.+|++. ...|++|+..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQN-PVVTKCR-----HYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCS-EEECTTS-----CEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcC-eeEccCC-----CHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 34456789999888654 6678886 57899999999975 458999999986
No 24
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.21 E-value=0.00023 Score=53.44 Aligned_cols=53 Identities=21% Similarity=0.465 Sum_probs=43.1
Q ss_pred CCCCCCCeeeEeccCCCCCCcccc-cccCCCcccccHHHHHHHHHhcCCccccccccccc
Q 023641 54 SSPSKLVECRICHEEDEDSNMEIP-CSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (279)
Q Consensus 54 ~~~~~~~~CRIC~ee~~d~~Li~P-C~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~ 112 (279)
+...+...|-||++.-. ++...| |. +..++.||.+|+..++...|++|+..+.
T Consensus 8 ~~~~~~~~C~IC~~~~~-~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMT-DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCTTTEETTTTEECS-SCEECTTTC-----CEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred ccCCcCCCCCCCChhhc-CceECCCCC-----CHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 34566789999998765 467778 64 5688999999999888889999999874
No 25
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.19 E-value=9.3e-05 Score=52.67 Aligned_cols=53 Identities=25% Similarity=0.546 Sum_probs=40.4
Q ss_pred CCCCCCeeeEeccCCCC------CCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 023641 55 SPSKLVECRICHEEDED------SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (279)
Q Consensus 55 ~~~~~~~CRIC~ee~~d------~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~~ 114 (279)
.+.+...|-||++.-.+ .....||. +..|..|+.+|++.+ ..|++|+.++...
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINHK 64 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCCBCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHcC--CCCCCCCCccChh
Confidence 34567789999987421 12567876 679999999999876 4899999998754
No 26
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.18 E-value=0.0002 Score=54.00 Aligned_cols=54 Identities=20% Similarity=0.527 Sum_probs=40.3
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 023641 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (279)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~~ 114 (279)
++....|-||++.-..+. .-+ .| -.-.|..||.+|++.++..+|++|++++...
T Consensus 12 ~~~i~~C~IC~~~i~~g~-~C~-~C---~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQ-SCE-TC---GIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSSCBCSSSCCBCSSSE-ECS-SS---CCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred cCCCCcCcchhhHcccCC-ccC-CC---CchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 345678999988764322 111 44 3568999999999988778999999998744
No 27
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.12 E-value=0.00026 Score=51.52 Aligned_cols=53 Identities=21% Similarity=0.395 Sum_probs=41.6
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 023641 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (279)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~~ 114 (279)
...+...|-||++.-.+ +...||. +..++.|+.+|+.. +..+|++|+.++...
T Consensus 4 ~~~~~~~C~IC~~~~~~-Pv~~~Cg-----H~fc~~Ci~~~~~~-~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKD-PVIVSTG-----QTYERSSIQKWLDA-GHKTCPKSQETLLHA 56 (78)
T ss_dssp CCSSSSSCTTTSCCCSS-EEEETTT-----EEEEHHHHHHHHTT-TCCBCTTTCCBCSSC
T ss_pred CCcccCCCCCccccccC-CEEcCCC-----CeecHHHHHHHHHH-CcCCCCCCcCCCChh
Confidence 34567899999887653 6777875 67899999999964 467899999988643
No 28
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.09 E-value=7.3e-05 Score=51.92 Aligned_cols=50 Identities=22% Similarity=0.547 Sum_probs=38.1
Q ss_pred CCCeeeEeccCCCC------CCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 023641 58 KLVECRICHEEDED------SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (279)
Q Consensus 58 ~~~~CRIC~ee~~d------~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~~ 114 (279)
+...|-||++.-.+ .....||. +..|..|+.+|++. ...|++|+.++...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHc--CCCCCCCCccCCcc
Confidence 45689999987421 12567776 67999999999987 45899999988753
No 29
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.05 E-value=0.00035 Score=47.73 Aligned_cols=47 Identities=23% Similarity=0.675 Sum_probs=36.4
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHh-cCCcccccc
Q 023641 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE-KGDTTCEIC 107 (279)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~-k~~~~CEiC 107 (279)
...+...|.||++...+ +...||. +..|..|+.+|++. ++...|++|
T Consensus 11 ~~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKE-PVIIECG-----HNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSS-CCCCSSC-----CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCc-cEeCCCC-----CccCHHHHHHHHHhcCCCCCCCCC
Confidence 34566789999988754 5667875 56899999999875 567789988
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.03 E-value=0.0005 Score=48.11 Aligned_cols=47 Identities=23% Similarity=0.500 Sum_probs=36.8
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhc-CCcccccc
Q 023641 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEK-GDTTCEIC 107 (279)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~k-~~~~CEiC 107 (279)
...+...|.||++...+ +...||. +..|+.|+.+|++.+ +..+|++|
T Consensus 16 ~~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQK-PVTIDCG-----HNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSS-CEECTTS-----SEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCC-eEEeCCC-----CcchHHHHHHHHHcCCCCCcCcCC
Confidence 44567899999987654 6666875 678999999999864 56789988
No 31
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.00 E-value=0.00027 Score=56.23 Aligned_cols=48 Identities=21% Similarity=0.488 Sum_probs=35.1
Q ss_pred CCeeeEeccCCCCC-----------------CcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 023641 59 LVECRICHEEDEDS-----------------NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (279)
Q Consensus 59 ~~~CRIC~ee~~d~-----------------~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~ 113 (279)
...|-||++.-++. ....||. +..|..|+.+|+.. ...|++|+++|..
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWEF 101 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTS-----CEEEHHHHHHHHTT--CSBCSSSCSBCCE
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccC-----cEECHHHHHHHHHc--CCcCcCCCCccee
Confidence 45688887764321 1335665 78999999999976 4589999999863
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=96.86 E-value=0.00025 Score=51.40 Aligned_cols=54 Identities=24% Similarity=0.550 Sum_probs=42.2
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhc-----CCccccccccccccC
Q 023641 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEK-----GDTTCEICREQYNPG 114 (279)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~k-----~~~~CEiCk~~Y~~~ 114 (279)
...+...|.||++...+ +...||. +..|..|+.+|++.+ +...|++|+..+...
T Consensus 8 ~~~~~~~C~IC~~~~~~-p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 8 NVQEEVTCPICLELLTE-PLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCCCEETTTTEECSS-CCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred hcccCCCCcCCCcccCC-eeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 34567899999988654 5566875 578999999999873 478999999998753
No 33
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.68 E-value=0.00099 Score=46.97 Aligned_cols=51 Identities=18% Similarity=0.345 Sum_probs=37.6
Q ss_pred CCCeeeEecc-CC--CCCC-cccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 023641 58 KLVECRICHE-ED--EDSN-MEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (279)
Q Consensus 58 ~~~~CRIC~e-e~--~d~~-Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~~ 114 (279)
+...|-||++ .. .... +..||. +..|..|+.+|+.. +...|++|+..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTC-----CCEEHHHHHHHHHT-TSSSCTTTCCCCSSC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCC-----CHhHHHHHHHHHHc-CCCcCCCCCCccccc
Confidence 3567999998 32 2212 457887 57899999999864 467899999998653
No 34
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=96.59 E-value=0.00071 Score=52.16 Aligned_cols=50 Identities=30% Similarity=0.663 Sum_probs=40.9
Q ss_pred CCCCeeeEeccCCCCCCcc-cccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 023641 57 SKLVECRICHEEDEDSNME-IPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (279)
Q Consensus 57 ~~~~~CRIC~ee~~d~~Li-~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~ 113 (279)
.+...|-||++.-.+ +.. .||. +..|..||.+|+..++ ..|++|+..+..
T Consensus 20 ~~~~~C~IC~~~~~~-p~~~~~Cg-----H~FC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD-ARLCPHCS-----KLCCFSCIRRWLTEQR-AQCPHCRAPLQL 70 (100)
T ss_dssp HHHTBCTTTCSBCSS-EEECTTTC-----CEEEHHHHHHHHHHTC-SBCTTTCCBCCG
T ss_pred CCCCCCccCCccccC-ccccCCCC-----ChhhHHHHHHHHHHCc-CCCCCCCCcCCH
Confidence 456789999988754 555 8886 6789999999999875 689999999864
No 35
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.53 E-value=0.0026 Score=47.70 Aligned_cols=55 Identities=31% Similarity=0.612 Sum_probs=42.9
Q ss_pred CCCCCeeeEeccCCC-CCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 023641 56 PSKLVECRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (279)
Q Consensus 56 ~~~~~~CRIC~ee~~-d~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~~ 114 (279)
.++...|-||++.-. +.....||.|. +.+++.|+.+|... +...|++|+..|...
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CG---H~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCG---YQICRFCWHRIRTD-ENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTS---CCCCHHHHHHHTTS-SCSBCTTTCCBCSSC
T ss_pred cccCCcCCccCccCccccccccccCCC---CCcCHHHHHHHHhc-CCCCCCCCCCccCCC
Confidence 356678999999764 34567888883 56899999998754 567999999999754
No 36
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.50 E-value=0.0017 Score=49.97 Aligned_cols=51 Identities=25% Similarity=0.638 Sum_probs=40.0
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhc-CCccccccccccccC
Q 023641 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEK-GDTTCEICREQYNPG 114 (279)
Q Consensus 58 ~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~k-~~~~CEiCk~~Y~~~ 114 (279)
+...|.||++.-. .+...||. +..|..|+.+|+..+ +...|++|+..+...
T Consensus 20 ~~~~C~IC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 20 KILECPICLELIK-EPVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HHTSCSSSCCCCS-SCCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCCcccChhhc-CeEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 3458999998764 35667875 678999999999864 467899999988754
No 37
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.43 E-value=0.00055 Score=55.64 Aligned_cols=48 Identities=21% Similarity=0.527 Sum_probs=0.4
Q ss_pred CCeeeEeccCCCCC----------------C-cccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 023641 59 LVECRICHEEDEDS----------------N-MEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (279)
Q Consensus 59 ~~~CRIC~ee~~d~----------------~-Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~ 113 (279)
...|-||+++-++. . +..||. +..|..|+.+|++.+ ..|++|+.+|..
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~-----H~FH~~CI~~Wl~~~--~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKTR--QVCPLDNREWEF 112 (117)
T ss_dssp C-----------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcC-----ceEcHHHHHHHHHcC--CcCCCCCCeeee
Confidence 35799998774321 1 223555 689999999999874 489999999864
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.40 E-value=0.0018 Score=51.38 Aligned_cols=49 Identities=18% Similarity=0.425 Sum_probs=39.1
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 023641 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (279)
Q Consensus 58 ~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~ 113 (279)
+...|-||++.-.+ +...||. +..|+.|+.+|+. .+...|++|+..+..
T Consensus 51 ~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR-PITTVCQ-----HNVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS-EEECTTS-----CEEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC-cEEeeCC-----CcccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 45689999987653 6667875 5689999999998 345689999999975
No 39
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=96.37 E-value=0.00092 Score=50.91 Aligned_cols=48 Identities=27% Similarity=0.509 Sum_probs=37.9
Q ss_pred CCCeeeEeccCCCCCCcc-cccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 023641 58 KLVECRICHEEDEDSNME-IPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (279)
Q Consensus 58 ~~~~CRIC~ee~~d~~Li-~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~ 113 (279)
+...|.||++.-.+ +.. .||. +..|..|+.+|+..+ ..|++|+..+..
T Consensus 21 ~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNI-AMIIPQCS-----HNYCSLCIRKFLSYK--TQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSS-EEECTTTC-----CEEEHHHHHHHHTTC--CBCTTTCCBCCG
T ss_pred CCCCcccCChhhCC-cCEECCCC-----CHhhHHHHHHHHHCC--CCCCCCCCcCCh
Confidence 45689999988654 444 3776 678999999999854 589999998875
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.22 E-value=0.00071 Score=52.89 Aligned_cols=51 Identities=24% Similarity=0.518 Sum_probs=39.3
Q ss_pred CCCCeeeEeccCCCC------CCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 023641 57 SKLVECRICHEEDED------SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (279)
Q Consensus 57 ~~~~~CRIC~ee~~d------~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~~ 114 (279)
.+...|-||++.-.+ .....||. +..|..|+.+|++.+. .|++|++.+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNAN--TCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTTCS--BCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHhCC--CCCCCCCcCccc
Confidence 456789999987422 12677886 6899999999997654 899999998754
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.22 E-value=0.0015 Score=54.27 Aligned_cols=50 Identities=20% Similarity=0.491 Sum_probs=38.7
Q ss_pred CCCCeeeEeccCCCCCCccc-ccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 023641 57 SKLVECRICHEEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (279)
Q Consensus 57 ~~~~~CRIC~ee~~d~~Li~-PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~ 113 (279)
.+...|-||++.-.+ +... ||. +..|..|+.+|+.. +...|++|+..+..
T Consensus 52 ~~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKN-TMTTKECL-----HRFCADCIITALRS-GNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSS-EEEETTTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhC-cCEeCCCC-----ChhHHHHHHHHHHh-CcCCCCCCCCcCCC
Confidence 345689999888654 4443 776 67899999999984 35789999999853
No 42
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.18 E-value=0.0012 Score=53.59 Aligned_cols=47 Identities=26% Similarity=0.685 Sum_probs=37.3
Q ss_pred CCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 023641 59 LVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (279)
Q Consensus 59 ~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~ 113 (279)
...|.||++.-.+ +...||. +..|..|+.+|+..+ ..|++|+.++..
T Consensus 53 ~~~C~iC~~~~~~-~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIE-AVTLNCA-----HSFCSYCINEWMKRK--IECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSS-EEEETTS-----CEEEHHHHHHHTTTC--SBCTTTCCBCCC
T ss_pred cCCCcccCcccCC-ceECCCC-----CCccHHHHHHHHHcC--CcCCCCCCcCCC
Confidence 4579999987653 6677875 689999999999754 579999988753
No 43
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.00 E-value=0.0016 Score=50.35 Aligned_cols=49 Identities=22% Similarity=0.480 Sum_probs=38.9
Q ss_pred CCCCeeeEeccCCCCCCccc-ccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 023641 57 SKLVECRICHEEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (279)
Q Consensus 57 ~~~~~CRIC~ee~~d~~Li~-PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~ 113 (279)
.+...|-||++.-.+ +... ||. +..|..|+.+|+..+ ..|++|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID-ATTIIECL-----HSFCKTCIVRYLETS--KYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSS-EEEETTTC-----CEEEHHHHHHHHTSC--SBCTTTCCBSCS
T ss_pred CCcCCCccCChHHhC-cCEeCCCC-----ChhhHHHHHHHHHhC--CcCcCCCccccc
Confidence 346789999887654 5554 886 578999999999765 789999998865
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=95.92 E-value=0.0036 Score=52.01 Aligned_cols=50 Identities=20% Similarity=0.436 Sum_probs=39.9
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 023641 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (279)
Q Consensus 58 ~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~~ 114 (279)
+...|.||++.-.+ +...||. +..++.|+.+|+.. +...|++|+..+...
T Consensus 77 ~~~~C~IC~~~~~~-pv~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ-PVTTECF-----HNVCKDCLQRSFKA-QVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS-EEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC-CEEcCCC-----CchhHHHHHHHHHh-CCCcCCCCCccCCCC
Confidence 45689999887643 6667886 56899999999985 456899999998764
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=95.91 E-value=0.003 Score=49.81 Aligned_cols=53 Identities=19% Similarity=0.441 Sum_probs=41.5
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 023641 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (279)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~~ 114 (279)
...+...|.||++.-.+ +...||. +..+..|+.+|+..++. .|++|+..+...
T Consensus 14 ~~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~~ 66 (118)
T 3hct_A 14 PLESKYECPICLMALRE-AVQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLEN 66 (118)
T ss_dssp CCCGGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCGG
T ss_pred CCCCCCCCCcCChhhcC-eEECCcC-----ChhhHHHHHHHHhhCCC-CCCCCCCCcCHH
Confidence 44566799999977643 5667765 67899999999987654 899999998754
No 46
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.47 E-value=0.0051 Score=59.08 Aligned_cols=58 Identities=21% Similarity=0.666 Sum_probs=42.1
Q ss_pred CCCCCCeeeEeccCCCC-CCc-ccccc---cCCCcccccHHHHHHHHHhcCC---------ccccccccccccCc
Q 023641 55 SPSKLVECRICHEEDED-SNM-EIPCS---CCGSLKYAHRKCVQRWCNEKGD---------TTCEICREQYNPGY 115 (279)
Q Consensus 55 ~~~~~~~CRIC~ee~~d-~~L-i~PC~---C~GSlkyVH~~CL~~W~~~k~~---------~~CEiCk~~Y~~~y 115 (279)
..+...+|-||++...+ +.+ ...|. |+ +..|..||.+|++..++ ..|+.|+++....+
T Consensus 304 ~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~---h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLDGGEVPLVSCDNAKCV---LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCC---CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred cccCCccCcccceeecCCCCCccccccCCccC---CccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 34567899999988644 333 34463 53 68999999999987432 58999999877554
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=95.45 E-value=0.0072 Score=47.16 Aligned_cols=51 Identities=27% Similarity=0.548 Sum_probs=40.2
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 023641 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (279)
Q Consensus 57 ~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~~ 114 (279)
.+...|-||++.-.+ +...||. +..+..|+.+|+..+ ...|++|+.++...
T Consensus 21 ~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 21 VKSISCQICEHILAD-PVETSCK-----HLFCRICILRCLKVM-GSYCPSCRYPCFPT 71 (116)
T ss_dssp HHHTBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHHT-CSBCTTTCCBCCGG
T ss_pred cCCCCCCCCCcHhcC-cEEcCCC-----CcccHHHHHHHHhHC-cCcCCCCCCCCCHh
Confidence 346789999887653 6667875 578999999999874 35799999998754
No 48
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.44 E-value=0.0055 Score=59.03 Aligned_cols=50 Identities=24% Similarity=0.634 Sum_probs=39.7
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 023641 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (279)
Q Consensus 58 ~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~~ 114 (279)
....|.||++... .+...||. +..|..|+.+|+.. +...|++|+.++...
T Consensus 331 ~~~~C~ICle~~~-~pv~lpCG-----H~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDK-DVKIEPCG-----HLMCTSCLTSWQES-EGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBC-CEEEETTC-----CEECHHHHHHHHHH-TCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCC-CeEEeCCC-----ChhhHHHHHHHHhc-CCCCCCCCCCccCCc
Confidence 3479999988764 36788987 35699999999984 456899999988753
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=94.84 E-value=0.0042 Score=48.43 Aligned_cols=51 Identities=24% Similarity=0.535 Sum_probs=38.3
Q ss_pred CCCCeeeEeccCCCC----C--CcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 023641 57 SKLVECRICHEEDED----S--NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (279)
Q Consensus 57 ~~~~~CRIC~ee~~d----~--~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~~ 114 (279)
.+...|-||++.-.+ + ....||. +..|..|+.+|++.+. .|++|+..+..+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNAN--TCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTS-----BEEEHHHHHHHHHHCS--BCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCC-----ChhhHHHHHHHHHcCC--CCCCCCCcCChh
Confidence 456789999876421 1 2455664 6899999999998754 899999998754
No 50
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=94.74 E-value=0.0036 Score=48.82 Aligned_cols=50 Identities=22% Similarity=0.539 Sum_probs=39.3
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 023641 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (279)
Q Consensus 57 ~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~ 113 (279)
.+...|-||++.-. .+...||. +..+..|+.+|+.. +...|++|+..+..
T Consensus 13 ~~~~~C~iC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILV-EPVTLPCN-----HTLCKPCFQSTVEK-ASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCS-SCEECTTS-----CEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccC-ceeEcCCC-----CHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence 44678999998764 36666876 57999999999964 35789999999864
No 51
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=94.55 E-value=0.03 Score=42.04 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=40.1
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 023641 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (279)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~~ 114 (279)
..+...|-||++--.+ +...||. +-.-+.|+.+|+.. ..+|++|+.++...
T Consensus 11 ~p~~~~CpI~~~~m~d-PV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTD-PVRLPSG-----TVMDRSIILRHLLN--SPTDPFNRQMLTES 61 (85)
T ss_dssp CCTTTBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCCGG
T ss_pred CchheECcccCchhcC-CeECCCC-----CEECHHHHHHHHhc--CCCCCCCcCCCChH
Confidence 3467899999887654 7888864 45779999999985 46899999988653
No 52
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=94.28 E-value=0.022 Score=49.60 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=39.6
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 023641 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (279)
Q Consensus 57 ~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~ 113 (279)
...-.|-||++--.+ |.+.||. +-.-+.|+.+|+..++.. |++|+.++..
T Consensus 206 ~~~~~c~i~~~~~~d-Pv~~~~g-----h~f~~~~i~~~~~~~~~~-cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMRE-PCITPSG-----ITYDRKDIEEHLQRVGHF-NPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSS-EEECSSC-----CEEETTHHHHHHHHTCSS-CTTTCCCCCG
T ss_pred CcccCCcCcCCHhcC-CeECCCC-----CEECHHHHHHHHHHCCCC-CcCCCCCCch
Confidence 456789999887654 8889974 456689999999876544 9999998864
No 53
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.88 E-value=0.01 Score=46.67 Aligned_cols=47 Identities=21% Similarity=0.456 Sum_probs=37.5
Q ss_pred CCCCeeeEeccCCCCCCccc-ccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 023641 57 SKLVECRICHEEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (279)
Q Consensus 57 ~~~~~CRIC~ee~~d~~Li~-PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~ 113 (279)
.+...|.||++.-.+ +... ||. +..++.|+.+|+. ..|++|+..+..
T Consensus 20 ~~~~~C~IC~~~~~~-pv~~~~Cg-----H~fC~~Ci~~~~~----~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 20 EKLLRCSRCTNILRE-PVCLGGCE-----HIFCSNCVSDCIG----TGCPVCYTPAWI 67 (117)
T ss_dssp HHTTSCSSSCSCCSS-CBCCCSSS-----CCBCTTTGGGGTT----TBCSSSCCBCSC
T ss_pred hhCCCCCCCChHhhC-ccEeCCCC-----CHHHHHHHHHHhc----CCCcCCCCcCcc
Confidence 356789999887654 5555 875 6788999999987 689999999854
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=93.68 E-value=0.02 Score=40.73 Aligned_cols=51 Identities=20% Similarity=0.505 Sum_probs=36.8
Q ss_pred CCCCCeeeEeccCCCCCC-cccccccCCCccc-ccHHHHHHHHHhcCCcccccccccccc
Q 023641 56 PSKLVECRICHEEDEDSN-MEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYNP 113 (279)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~-Li~PC~C~GSlky-VH~~CL~~W~~~k~~~~CEiCk~~Y~~ 113 (279)
.+....|.||++...+.. +..||. +. +=..|+.+|.+.+ .+|++|++++..
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~pCg-----H~~~C~~C~~~~~~~~--~~CPiCR~~i~~ 56 (63)
T 2vje_B 4 QNLLKPCSLCEKRPRDGNIIHGRTG-----HLVTCFHCARRLKKAG--ASCPICKKEIQL 56 (63)
T ss_dssp GGGGSBCTTTSSSBSCEEEEETTEE-----EEEECHHHHHHHHHTT--CBCTTTCCBCCE
T ss_pred CCcCCCCcccCCcCCCeEEEecCCC-----CHhHHHHHHHHHHHhC--CcCCCcCchhhc
Confidence 345678999998764422 235987 33 5789999998653 689999998753
No 55
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=93.51 E-value=0.027 Score=40.08 Aligned_cols=48 Identities=17% Similarity=0.498 Sum_probs=35.0
Q ss_pred CCCeeeEeccCCCCCCccc--ccccCCCccc-ccHHHHHHHHHhcCCcccccccccccc
Q 023641 58 KLVECRICHEEDEDSNMEI--PCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYNP 113 (279)
Q Consensus 58 ~~~~CRIC~ee~~d~~Li~--PC~C~GSlky-VH~~CL~~W~~~k~~~~CEiCk~~Y~~ 113 (279)
+...|.||++...+ .... ||. +. .=..|+.+|.+. ...|++|++++..
T Consensus 7 ~~~~C~IC~~~~~~-~~~~~~pCg-----H~~~C~~C~~~~~~~--~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKN-GCIVHGKTG-----HLMACFTCAKKLKKR--NKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSC-EEEEETTEE-----EEEECHHHHHHHHHT--TCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCC-EEEECCCCC-----ChhhHHHHHHHHHHc--CCcCCCcCcchhc
Confidence 45689999988654 3333 987 33 347999999964 3589999998753
No 56
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=93.24 E-value=0.054 Score=42.11 Aligned_cols=51 Identities=12% Similarity=0.119 Sum_probs=40.3
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 023641 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (279)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~ 113 (279)
...+...|-||++--.+ |...||. +-.-+.|+.+|+.. ..+|++|+.++..
T Consensus 25 ~~p~~~~CpI~~~~m~d-PV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 75 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTD-PVRLPSG-----TIMDRSIILRHLLN--SPTDPFNRQTLTE 75 (100)
T ss_dssp SCSTTTBCTTTCSBCSS-EEEETTT-----EEEEHHHHHHHTTS--CSBCSSSCCBCCT
T ss_pred cCcHhhCCcCccCcccC-CeECCCC-----CEEchHHHHHHHHc--CCCCCCCCCCCCh
Confidence 34567899999877654 8888864 45779999999974 5689999998875
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=93.11 E-value=0.016 Score=42.29 Aligned_cols=44 Identities=18% Similarity=0.572 Sum_probs=35.4
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCccc-ccHHHHHHHHHhcCCcccccccccccc
Q 023641 58 KLVECRICHEEDEDSNMEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYNP 113 (279)
Q Consensus 58 ~~~~CRIC~ee~~d~~Li~PC~C~GSlky-VH~~CL~~W~~~k~~~~CEiCk~~Y~~ 113 (279)
+...|.||++... ++...||. +. ....|+.+| ..|++|+..+..
T Consensus 23 ~~~~C~iC~~~~~-~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNI-AIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBC-CEEEETTC-----CBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCC-CEEEcCCC-----ChhHHHHhhhcC------ccCCCcCcCccC
Confidence 4568999998764 36677986 55 899999999 689999998864
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.08 E-value=0.062 Score=40.88 Aligned_cols=51 Identities=22% Similarity=0.373 Sum_probs=39.1
Q ss_pred CCCCCCCeeeEeccCCCCCCcccc-cccCCCcccccHHHHHHHHHhc----CCccccc--cccc
Q 023641 54 SSPSKLVECRICHEEDEDSNMEIP-CSCCGSLKYAHRKCVQRWCNEK----GDTTCEI--CREQ 110 (279)
Q Consensus 54 ~~~~~~~~CRIC~ee~~d~~Li~P-C~C~GSlkyVH~~CL~~W~~~k----~~~~CEi--Ck~~ 110 (279)
.+..+...|-||++.-.+ |...| |. +-.-+.|+.+|+... +..+|++ |...
T Consensus 2 ~~~~~~~~CPI~~~~~~d-PV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 2 SSGSSGFTCPITKEEMKK-PVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSCSSCCBCTTTCSBCSS-EEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCCCcEeECcCcCchhcC-CEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 344567889999877654 77776 75 467799999999874 4679999 8866
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=93.06 E-value=0.038 Score=45.78 Aligned_cols=53 Identities=19% Similarity=0.441 Sum_probs=41.2
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 023641 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (279)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~~ 114 (279)
...+...|-||++.-.+ +...||. ....+.|+.+|++.++. +|++|+..+...
T Consensus 14 ~~~~~~~C~IC~~~~~~-pv~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 14 PLESKYECPICLMALRE-AVQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLEN 66 (170)
T ss_dssp CCCGGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCGG
T ss_pred CCCCCCCCCCCChhhcC-cEECCCC-----CHHHHHHHHHHHHhCCC-CCCCCccCcchh
Confidence 45567799999987653 6666764 56899999999987653 899999988754
No 60
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.55 E-value=0.026 Score=38.97 Aligned_cols=46 Identities=20% Similarity=0.558 Sum_probs=34.9
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 023641 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (279)
Q Consensus 57 ~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~ 113 (279)
.+...|.||++...+ +...||. +..+..|+.+| ...|++|++.+..
T Consensus 4 ~~~~~C~IC~~~~~~-p~~l~Cg-----H~fC~~Ci~~~-----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC-PKLLPCL-----HTLCSGCLEAS-----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBC-CSCSTTS-----CCSBTTTCSSS-----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCC-eEEcCCC-----CcccHHHHccC-----CCCCCcCCcEeec
Confidence 456779999987653 6778875 45788898773 5689999998864
No 61
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=92.39 E-value=0.083 Score=40.88 Aligned_cols=52 Identities=17% Similarity=0.065 Sum_probs=39.9
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 023641 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (279)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~~ 114 (279)
..+...|-||++--.+ |...||. | +-.-+.|+++|+.. ..+|++|++++...
T Consensus 19 ~p~~~~CpI~~~~m~d-PV~~~cG--~--htf~r~cI~~~l~~--~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCD-PVVLPSS--R--VTVDRSTIARHLLS--DQTDPFNRSPLTMD 70 (98)
T ss_dssp CCTTTBCTTTCSBCSS-EEECTTT--C--CEEEHHHHHHHTTT--SCBCTTTCSBCCTT
T ss_pred CcHhcCCcCccccccC-CeECCCC--C--eEECHHHHHHHHHh--CCCCCCCCCCCChh
Confidence 3467889999887654 7788865 1 35679999999986 45899999998753
No 62
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=92.11 E-value=0.082 Score=47.32 Aligned_cols=52 Identities=21% Similarity=0.574 Sum_probs=39.7
Q ss_pred CCCCeeeEeccCCCCCCcccccc-cCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 023641 57 SKLVECRICHEEDEDSNMEIPCS-CCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (279)
Q Consensus 57 ~~~~~CRIC~ee~~d~~Li~PC~-C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~~ 114 (279)
+....|-||.+--..+ .-|. |. .-.|..|+.+|++.++...|+.|+..+...
T Consensus 178 ~~i~~C~iC~~iv~~g---~~C~~C~---~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 178 DAVKICNICHSLLIQG---QSCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TTCCBCTTTCSBCSSC---EECSSSC---CEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCCcCcchhhHHhCC---cccCccC---hHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 3588999998765432 2232 53 579999999999988888999999987643
No 63
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=92.04 E-value=0.019 Score=47.27 Aligned_cols=50 Identities=14% Similarity=0.333 Sum_probs=38.9
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccc
Q 023641 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111 (279)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y 111 (279)
...+...|-||++.-.+ +...||. ...++.|+.+|++. +...|++|+.+.
T Consensus 27 ~l~~~~~C~IC~~~~~~-pv~~~Cg-----H~FC~~Ci~~~~~~-~~~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRR-PFQAQCG-----HRYCSFCLASILSS-GPQNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHGGG-SCEECHHHHHTT
T ss_pred cCCcCcCCCCCChhhcC-cEECCCC-----CccCHHHHHHHHhc-CCCCCCCCCCcc
Confidence 45667899999987643 5667776 57899999999964 456899999865
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=91.46 E-value=0.087 Score=45.57 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=41.5
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 023641 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (279)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~~ 114 (279)
.......|-||++--.+ |.+.||. +-.=+.|+.+|+...+. +|++|+.++...
T Consensus 102 ~ip~~f~CPI~~elm~D-PV~~~~G-----htfer~~I~~~l~~~~~-tcP~t~~~l~~~ 154 (179)
T 2f42_A 102 EIPDYLCGKISFELMRE-PCITPSG-----ITYDRKDIEEHLQRVGH-FDPVTRSPLTQD 154 (179)
T ss_dssp CCCGGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHHTCS-BCTTTCCBCCGG
T ss_pred CCcHhhcccCccccCCC-CeECCCC-----CEECHHHHHHHHHhCCC-CCCCCcCCCChh
Confidence 34467889999887654 8888874 45779999999987665 799999988653
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=91.15 E-value=0.081 Score=39.81 Aligned_cols=49 Identities=20% Similarity=0.449 Sum_probs=37.2
Q ss_pred CCCeeeEeccCCCCCCcc--cccccCCCcccccHHHHHHHHHhc---C---Cccccc--ccccc
Q 023641 58 KLVECRICHEEDEDSNME--IPCSCCGSLKYAHRKCVQRWCNEK---G---DTTCEI--CREQY 111 (279)
Q Consensus 58 ~~~~CRIC~ee~~d~~Li--~PC~C~GSlkyVH~~CL~~W~~~k---~---~~~CEi--Ck~~Y 111 (279)
+...|-||++...+..+. .||. +..-+.|+.+++..+ + ..+|+. |+..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~Cg-----H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CCcCCcccCcccccccceEcCCCC-----CcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 466899999886544443 4787 578899999999763 2 479999 99884
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.91 E-value=0.2 Score=36.12 Aligned_cols=47 Identities=19% Similarity=0.525 Sum_probs=34.6
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCccc-ccHHHHHHHHHhcCCccccccccccccC
Q 023641 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYNPG 114 (279)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~Li~PC~C~GSlky-VH~~CL~~W~~~k~~~~CEiCk~~Y~~~ 114 (279)
..+...|.||++... +....||. +. +-..|+++ ...|++|+..+...
T Consensus 12 ~~~~~~C~IC~~~~~-~~v~~pCg-----H~~~C~~C~~~------~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 12 EENSKDCVVCQNGTV-NWVLLPCR-----HTCLCDGCVKY------FQQCPMCRQFVQES 59 (68)
T ss_dssp CCCSSCCSSSSSSCC-CCEETTTT-----BCCSCTTHHHH------CSSCTTTCCCCCCE
T ss_pred CCCCCCCCCcCcCCC-CEEEECCC-----ChhhhHHHHhc------CCCCCCCCcchhce
Confidence 345678999988764 47788997 23 56688873 36899999988653
No 67
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.37 E-value=0.14 Score=37.05 Aligned_cols=45 Identities=18% Similarity=0.551 Sum_probs=33.9
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCccc-ccHHHHHHHHHhcCCccccccccccccC
Q 023641 58 KLVECRICHEEDEDSNMEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYNPG 114 (279)
Q Consensus 58 ~~~~CRIC~ee~~d~~Li~PC~C~GSlky-VH~~CL~~W~~~k~~~~CEiCk~~Y~~~ 114 (279)
+...|.||++... ++...||. +. ....|+++. ..|++|+.++...
T Consensus 24 ~~~~C~IC~~~~~-~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRNI-AIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSCC-CBCCSSSC-----CCCBCHHHHHHC------SBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCCC-CEEEecCC-----CHHHHHHHhhCC------CCCccCCceecCc
Confidence 4568999998764 46778986 44 688998643 6899999988653
No 68
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=86.78 E-value=0.21 Score=36.50 Aligned_cols=53 Identities=13% Similarity=0.320 Sum_probs=37.5
Q ss_pred CCCCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHh--cCCcccccccccc
Q 023641 53 GSSPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQY 111 (279)
Q Consensus 53 ~~~~~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~--k~~~~CEiCk~~Y 111 (279)
+..+.....|.||.+.+ .|+ -|. +=-+..|..||.-.+.. ++.+.|..|...-
T Consensus 6 ~~~~~~~~~C~vC~~~~---~ll-~Cd--~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 6 QQNLAPGARCGVCGDGT---DVL-RCT--HCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTCCCTTTSCCT---TCE-ECS--SSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred ccCCCCCCCcCCCCCCC---eEE-ECC--CCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 44566677899997653 343 233 33479999999877765 5789999998653
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=83.19 E-value=0.16 Score=47.92 Aligned_cols=46 Identities=24% Similarity=0.640 Sum_probs=36.3
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCccc-ccHHHHHHHHHhcCCccccccccccccC
Q 023641 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYNPG 114 (279)
Q Consensus 57 ~~~~~CRIC~ee~~d~~Li~PC~C~GSlky-VH~~CL~~W~~~k~~~~CEiCk~~Y~~~ 114 (279)
.+...|.||++... ++...||. +. ....|+.+| ..|++|+..+...
T Consensus 293 ~~~~~C~IC~~~~~-~~v~lpCg-----H~~fC~~C~~~~------~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 293 QEERTCKVCMDKEV-SVVFIPCG-----HLVVCQECAPSL------RKCPICRGIIKGT 339 (345)
T ss_dssp HTTCBCTTTSSSBC-CEEEETTC-----CEEECTTTGGGC------SBCTTTCCBCCEE
T ss_pred cCCCCCCccCCcCC-ceEEcCCC-----ChhHhHHHHhcC------CcCCCCCCCccCe
Confidence 35679999998764 36667987 34 788999988 6899999988643
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=77.97 E-value=0.96 Score=41.62 Aligned_cols=53 Identities=15% Similarity=0.263 Sum_probs=40.4
Q ss_pred CCCCCeeeEeccCCCCCCccc-ccccCCCcccccHHHHHHHHHhcCCccccc--cccccccC
Q 023641 56 PSKLVECRICHEEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGDTTCEI--CREQYNPG 114 (279)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~Li~-PC~C~GSlkyVH~~CL~~W~~~k~~~~CEi--Ck~~Y~~~ 114 (279)
......|-||++--.+ |... .|. +-.=+.|+.+|+..++...|++ |+..+...
T Consensus 178 ~~~el~CPIcl~~f~D-PVts~~CG-----HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 178 GKIELTCPITCKPYEA-PLISRKCN-----HVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp SBCCSBCTTTSSBCSS-EEEESSSC-----CEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred CceeeECcCccCcccC-CeeeCCCC-----CcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 4667889999876643 5543 554 4567899999998878889999 99988653
No 71
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=77.13 E-value=0.95 Score=32.03 Aligned_cols=46 Identities=11% Similarity=0.197 Sum_probs=32.9
Q ss_pred CeeeEeccCCCCCCccc-ccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 023641 60 VECRICHEEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (279)
Q Consensus 60 ~~CRIC~ee~~d~~Li~-PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~ 113 (279)
..|-||++--. ++.+. ||. .-.=+.|+++|+++.+ +|++++++...
T Consensus 4 ~~CpIs~~~m~-dPV~~~~sG-----~~yer~~I~~~l~~~~--~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPR-RPVLSPKSR-----TIFEKSLLEQYVKDTG--NDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCS-SEEEETTTT-----EEEEHHHHHHHHHHHS--BCTTTCCBCCG
T ss_pred EEecCCCCCCC-CCEEeCCCC-----cEEcHHHHHHHHHhCC--CCcCCcCCCCh
Confidence 45777766554 35555 443 4677999999998765 49999988864
No 72
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=76.86 E-value=3.5 Score=32.42 Aligned_cols=54 Identities=22% Similarity=0.507 Sum_probs=38.8
Q ss_pred CCCCeeeEeccCC---CCCCcccccc-cCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 023641 57 SKLVECRICHEED---EDSNMEIPCS-CCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (279)
Q Consensus 57 ~~~~~CRIC~ee~---~d~~Li~PC~-C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~~ 114 (279)
.....|.||-++- .++.+..-|. |. --|=+.|++-=++ .++..|..||++|+-.
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~---FPvCrpCyEYErk-eG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECG---FPACRPCYEYERR-EGTQNCPQCKTRYKRL 71 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSC---CCCCHHHHHHHHH-TSCSSCTTTCCCCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccC---ChhhHHHHHHHHh-ccCccccccCCccccc
Confidence 3557999998773 4566777776 42 2478899876554 4678999999999743
No 73
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=76.83 E-value=0.49 Score=34.95 Aligned_cols=45 Identities=22% Similarity=0.625 Sum_probs=33.3
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCccc-ccHHHHHHHHHhcCCccccccccccccC
Q 023641 58 KLVECRICHEEDEDSNMEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYNPG 114 (279)
Q Consensus 58 ~~~~CRIC~ee~~d~~Li~PC~C~GSlky-VH~~CL~~W~~~k~~~~CEiCk~~Y~~~ 114 (279)
+...|.||++... +....||. +. .=..|+.+| ..|++|+..+...
T Consensus 17 ~~~~C~IC~~~~~-~~v~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEEI-NSTFCPCG-----HTVCCESCAAQL------QSCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSBC-CEEEETTC-----BCCBCHHHHTTC------SBCTTTCCBCCEE
T ss_pred CCCEeEEeCcccC-cEEEECCC-----CHHHHHHHHHhc------CcCCCCCchhhCe
Confidence 3458999988764 36778987 23 457898877 3999999988754
No 74
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=74.60 E-value=1.6 Score=33.89 Aligned_cols=54 Identities=22% Similarity=0.528 Sum_probs=35.8
Q ss_pred CCCCCCCCeeeEeccCCCCCCccc--ccccCCCcccccHHHHHHHHHh--cCCccccccccccc
Q 023641 53 GSSPSKLVECRICHEEDEDSNMEI--PCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQYN 112 (279)
Q Consensus 53 ~~~~~~~~~CRIC~ee~~d~~Li~--PC~C~GSlkyVH~~CL~~W~~~--k~~~~CEiCk~~Y~ 112 (279)
...+.+...| ||...+. +.|+. -|.|. ..+.|..||. +.. ++.+.|+.|...-+
T Consensus 30 ~~d~~e~~yC-iC~~~~~-g~MI~CD~~dC~--~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 30 PVDPNEPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCCSCCCBCS-TTCCBCC-SCCCCCSCSSCS--CCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CcCCCCCcEE-ECCCCCC-CCEeEecCCCCC--CCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 3455677888 9987653 45543 23353 2689999987 333 47899999976543
No 75
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=62.78 E-value=1.2 Score=32.86 Aligned_cols=52 Identities=17% Similarity=0.340 Sum_probs=34.1
Q ss_pred CCCCCeeeEeccCC--CCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccc
Q 023641 56 PSKLVECRICHEED--EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQ 110 (279)
Q Consensus 56 ~~~~~~CRIC~ee~--~d~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~ 110 (279)
......|.||...+ +++.|+ -|. +=-+.+|..|+.--..-++.+.|+.|...
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll-~CD--~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVIL-FCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEE-ECS--SSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEE-ECC--CCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 34567899998775 333443 333 33358999998643344688999999753
No 76
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=61.11 E-value=1.2 Score=33.97 Aligned_cols=56 Identities=20% Similarity=0.361 Sum_probs=35.7
Q ss_pred CCCCCCeeeEeccCC-CCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccc
Q 023641 55 SPSKLVECRICHEED-EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (279)
Q Consensus 55 ~~~~~~~CRIC~ee~-~d~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~ 112 (279)
...+...|.||...+ ++.+-+.-|. +=-..+|..|+.--..-++.|.|..|...-.
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD--~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECS--SSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECC--CCCchhhcccCCCCccCCCceECccccCccc
Confidence 345678899998775 2222233343 3335789999864334468899999976543
No 77
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=60.42 E-value=1.3 Score=34.50 Aligned_cols=51 Identities=18% Similarity=0.342 Sum_probs=32.9
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHh--cCCccccccc
Q 023641 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICR 108 (279)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~--k~~~~CEiCk 108 (279)
+..+...|.||.+.++.++|+ -| .+=-+..|..||.-+... ++.+.|.-|+
T Consensus 3 ~~~~~~~C~~C~~~g~~~~ll-~C--~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 3 SGSSGANCAVCDSPGDLLDQF-FC--TTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCCSCBTTTCCCCCTTTSE-EC--SSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCCcCCCCCCCCcCCe-EC--CCCCCCcChHHhCCccccccccCccCCcCC
Confidence 345677899998887544554 33 333478999999876543 3555555544
No 78
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=58.72 E-value=1.7 Score=29.24 Aligned_cols=46 Identities=26% Similarity=0.642 Sum_probs=29.8
Q ss_pred eeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHh--cCCcccccccc
Q 023641 61 ECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICRE 109 (279)
Q Consensus 61 ~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~--k~~~~CEiCk~ 109 (279)
.|.||...++++.|+. |.+=-+..|..||.-=+.+ ++.+.|..|..
T Consensus 2 ~C~vC~~~~~~~~ll~---Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLIL---CDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEE---CTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEE---CCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 5888987765445442 3344478999998532322 46888998864
No 79
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=56.26 E-value=2.7 Score=30.90 Aligned_cols=52 Identities=23% Similarity=0.556 Sum_probs=34.3
Q ss_pred CCCCCCCeeeEeccCCCCCCccc--ccccCCCcccccHHHHHHHHHh--cCCcccccccccc
Q 023641 54 SSPSKLVECRICHEEDEDSNMEI--PCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQY 111 (279)
Q Consensus 54 ~~~~~~~~CRIC~ee~~d~~Li~--PC~C~GSlkyVH~~CL~~W~~~--k~~~~CEiCk~~Y 111 (279)
..+.+...| ||...+. +.|+. -|.|. ..+.|..||. +.. ++.+.|+.|...-
T Consensus 11 ~d~~~~~~C-~C~~~~~-g~MI~CD~~~C~--~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 11 VDPNEPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCTTSCCCS-TTCCCSC-SSEECCSCSSCS--CCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred cCCCCCCEE-ECCCCCC-CCEeEeeCCCCC--CccEecccCC--cCcCCCCCEECCCCCccc
Confidence 345667888 8977653 45553 22243 2699999997 433 4789999997543
No 80
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=56.21 E-value=1.4 Score=32.02 Aligned_cols=54 Identities=20% Similarity=0.370 Sum_probs=35.4
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHh--cCCccccccccccc
Q 023641 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQYN 112 (279)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~--k~~~~CEiCk~~Y~ 112 (279)
..+...|.||...++...|+. |.+=-.+.|..||.--... .+.+.|+.|.....
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~---CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIG---CDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEE---CSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCCcCCCCCCCCCCCCCEEE---cCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 345567999987765434543 3333479999998654432 26889999986654
No 81
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=47.46 E-value=4.3 Score=28.65 Aligned_cols=49 Identities=16% Similarity=0.486 Sum_probs=32.8
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHh--cCCccccccccc
Q 023641 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQ 110 (279)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~--k~~~~CEiCk~~ 110 (279)
......|.+|...+ .|+. |.+=-+..|..||.--+.+ ++.+.|..|..+
T Consensus 8 ~~~~~~C~vC~~~g---~ll~---CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQGG---EIIL---CDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCCS---SEEE---CSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCCC---cEEE---CCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 34567899998743 3332 3344568999998864432 578999999753
No 82
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=42.62 E-value=33 Score=23.34 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=17.8
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhhhc
Q 023641 221 LLILRTIGILLPIYVMVKAFTAIQRRRHQQD 251 (279)
Q Consensus 221 ~~~lra~gillP~yi~~~~~~~~q~~r~~q~ 251 (279)
....-..| +|=+.|++-.+..+-|||+||+
T Consensus 13 ~Ia~~vVG-vll~vi~~l~~~~~~RRR~~~~ 42 (44)
T 2jwa_A 13 SIISAVVG-ILLVVVLGVVFGILIKRRQQKI 42 (44)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHCSCC
T ss_pred chHHHHHH-HHHHHHHHHHHHhheehhhhhc
Confidence 34455567 4444555555666777777764
No 83
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=38.36 E-value=1.4 Score=31.27 Aligned_cols=50 Identities=24% Similarity=0.579 Sum_probs=30.5
Q ss_pred CCCCCCCeeeEeccCCCCCCccc--ccccCCCcccccHHHHHHHHHh--cCCcccccccc
Q 023641 54 SSPSKLVECRICHEEDEDSNMEI--PCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICRE 109 (279)
Q Consensus 54 ~~~~~~~~CRIC~ee~~d~~Li~--PC~C~GSlkyVH~~CL~~W~~~--k~~~~CEiCk~ 109 (279)
..+.+...| ||...+. +.|+. -|.|. ..+.|..|+. +.. ++.+.|+.|..
T Consensus 5 ~d~~e~~~C-~C~~~~~-g~mi~CD~cdC~--~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 5 VDPNEPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp ----CCEET-TTTEECC-SEEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred cCCCCCCEE-ECCCcCC-CCEEEeCCCCCC--CceEehhcCC--CCcCCCCCEECcCccC
Confidence 345567788 8977653 45543 22343 2689999997 443 47888988864
No 84
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=37.23 E-value=15 Score=30.48 Aligned_cols=47 Identities=26% Similarity=0.429 Sum_probs=33.4
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHH---------hcCCccccccc
Q 023641 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCN---------EKGDTTCEICR 108 (279)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~---------~k~~~~CEiCk 108 (279)
......|++|.++++ |+ -| .+=.+-.|..||..=+. ..+.|.|..|.
T Consensus 60 Dg~~d~C~vC~~GG~---Ll-cC--D~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGN---LI-CC--DFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp TSCBCSCSSSCCCSS---EE-EC--SSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCCCeecccCCCCc---EE-eC--CCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 345678999987763 33 22 23347899999997652 46899999996
No 85
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=36.14 E-value=3 Score=35.83 Aligned_cols=50 Identities=24% Similarity=0.442 Sum_probs=34.6
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHh--cCCcccccccccccc
Q 023641 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQYNP 113 (279)
Q Consensus 58 ~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~--k~~~~CEiCk~~Y~~ 113 (279)
....|.+|..++ .|+ - |.|--+..|..||.-.+.. +|.|.|..|...-+.
T Consensus 6 ~~~~C~~C~~~g---~ll-~--Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~ 57 (207)
T 3u5n_A 6 NEDWCAVCQNGG---DLL-C--CEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKP 57 (207)
T ss_dssp SCSSBTTTCCCE---EEE-E--CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSSC
T ss_pred CCCCCCCCCCCC---ceE-E--cCCCCCccCCccCCCCCCCCCCCCEEeCceeCcccc
Confidence 345699998664 233 2 4444578999998665543 578999999876543
No 86
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=34.74 E-value=2.9 Score=29.48 Aligned_cols=52 Identities=21% Similarity=0.326 Sum_probs=34.1
Q ss_pred CCCCCeeeEeccCCC--CCCcccccccCCCcccccHHHHHHHH-----HhcCCccccccccc
Q 023641 56 PSKLVECRICHEEDE--DSNMEIPCSCCGSLKYAHRKCVQRWC-----NEKGDTTCEICREQ 110 (279)
Q Consensus 56 ~~~~~~CRIC~ee~~--d~~Li~PC~C~GSlkyVH~~CL~~W~-----~~k~~~~CEiCk~~ 110 (279)
+.+...|.+|...+. ++.|+ -| .+=-+..|..|+.--+ ..++.+.|..|...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll-~C--d~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMV-IC--DKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEE-EC--SSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCEE-EC--CCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 456778999987642 23443 22 3334678999987433 24678999999754
No 87
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.20 E-value=2.3 Score=29.41 Aligned_cols=48 Identities=19% Similarity=0.428 Sum_probs=29.0
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHh--cCCcccccccc
Q 023641 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICRE 109 (279)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~--k~~~~CEiCk~ 109 (279)
......|.+|...+ .|+ - |.+=-+..|..||.--+.. ++.+.|..|..
T Consensus 6 ~~~~~~C~vC~~~g---~ll-~--Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKSG---QLL-M--CDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCSS---CCE-E--CSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCCC---eEE-E--cCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 34566799998753 333 2 3333478888887643322 46777777754
No 88
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.10 E-value=2.4 Score=32.54 Aligned_cols=52 Identities=23% Similarity=0.374 Sum_probs=32.9
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHH--hcCCccccccccc
Q 023641 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCN--EKGDTTCEICREQ 110 (279)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~--~k~~~~CEiCk~~ 110 (279)
..+...|.||...++++.|+ -|. +=-+..|..||.-=+. -++.+.|+.|...
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll-~CD--~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLL-FCD--GCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCE-ECT--TTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEE-EcC--CCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 34566799998776443333 332 3336899999863222 2578889999754
No 89
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=33.17 E-value=7.1 Score=30.07 Aligned_cols=50 Identities=22% Similarity=0.424 Sum_probs=31.9
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHH-hcCCccccccc
Q 023641 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCN-EKGDTTCEICR 108 (279)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~-~k~~~~CEiCk 108 (279)
...+...| ||...++++.|+. |.+=-++.|..|+.-=.. ..+.+.|+.|+
T Consensus 24 ~~~d~vrC-iC~~~~~~~~mi~---Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~ 74 (98)
T 2lv9_A 24 YGTDVTRC-ICGFTHDDGYMIC---CDKCSVWQHIDCMGIDRQHIPDTYLCERCQ 74 (98)
T ss_dssp CCCCBCCC-TTSCCSCSSCEEE---BTTTCBEEETTTTTCCTTSCCSSBCCTTTS
T ss_pred CCCCCEEe-ECCCccCCCcEEE---cCCCCCcCcCcCCCCCccCCCCCEECCCCc
Confidence 34456678 8877666666654 233357999999853111 12468999996
No 90
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=31.05 E-value=17 Score=29.72 Aligned_cols=47 Identities=28% Similarity=0.451 Sum_probs=32.9
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHH------H---hcCCccccccc
Q 023641 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWC------N---EKGDTTCEICR 108 (279)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~------~---~k~~~~CEiCk 108 (279)
......|++|.+++ .|+ - |.+--+-.|.+||.+=+ + .++.|.|..|.
T Consensus 54 Dg~~~~C~vC~dGG---~Ll-c--Cd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~ 109 (129)
T 3ql9_A 54 DGMDEQCRWCAEGG---NLI-C--CDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICH 109 (129)
T ss_dssp TSCBSSCTTTCCCS---EEE-E--CSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred CCCCCcCeecCCCC---eeE-e--cCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence 44556799998765 233 2 33446889999999752 2 46899999994
No 91
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=30.94 E-value=7.6 Score=32.06 Aligned_cols=51 Identities=18% Similarity=0.386 Sum_probs=33.9
Q ss_pred CCCCeeeEeccCCC-CCCcccccccCCCcccccHHHHHHHHH---hcCCcccccccccc
Q 023641 57 SKLVECRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCN---EKGDTTCEICREQY 111 (279)
Q Consensus 57 ~~~~~CRIC~ee~~-d~~Li~PC~C~GSlkyVH~~CL~~W~~---~k~~~~CEiCk~~Y 111 (279)
.+...| +|....+ ++.|+.=-.| -.|.|..|+.---. ..+.+.|+.|...-
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C---~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRC---QNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTT---CCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCC---CchhChhhcCCchhhccCccCeecCCCcchh
Confidence 456789 9987653 4456542235 48999999853222 25689999998654
No 92
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=30.76 E-value=18 Score=28.19 Aligned_cols=48 Identities=17% Similarity=0.358 Sum_probs=27.7
Q ss_pred CCCeeeEeccCCCC------CCcccccccCCCcccccHHHHHHHH-----HhcCCccccccc
Q 023641 58 KLVECRICHEEDED------SNMEIPCSCCGSLKYAHRKCVQRWC-----NEKGDTTCEICR 108 (279)
Q Consensus 58 ~~~~CRIC~ee~~d------~~Li~PC~C~GSlkyVH~~CL~~W~-----~~k~~~~CEiCk 108 (279)
....|.+|+..++. ++|+. |.+=-+..|..||..+- ..++.+.|.-|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~---C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELIS---CADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEE---CTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceE---hhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 45689999876422 24552 33334688999996321 124555555554
No 93
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=30.14 E-value=16 Score=28.97 Aligned_cols=54 Identities=17% Similarity=0.389 Sum_probs=38.5
Q ss_pred CCCCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccCc
Q 023641 53 GSSPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPGY 115 (279)
Q Consensus 53 ~~~~~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~k~~~~CEiCk~~Y~~~y 115 (279)
+.+--....|+.|+-++. .|+. |+ -+|.=..||..-+..+ ..|+||+.+...+.
T Consensus 22 d~s~~G~~nCKsCWf~~k--~LV~-C~----dHYLCl~CLtlmL~~S--drCpIC~~pLPtkl 75 (99)
T 2ko5_A 22 DATHLGPQFCKSCWFENK--GLVE-CN----NHYLCLNCLTLLLSVS--NRCPICKMPLPTKL 75 (99)
T ss_dssp SCCCSCCCCCCSSCSCCS--SEEE-CS----SCEEEHHHHHHTCSSS--SEETTTTEECCCCS
T ss_pred CccccCcccChhhccccC--Ceee-ec----chhhHHHHHHHHHhhc--cCCcccCCcCCcce
Confidence 345566778999988763 4552 32 3789999988777554 48999999986553
No 94
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=28.20 E-value=50 Score=21.89 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=25.1
Q ss_pred CchhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 023641 212 GEYSLTLFTLLILRTIGILLPIYVMVKAFTAIQR 245 (279)
Q Consensus 212 ~~~~~~~~t~~~lra~gillP~yi~~~~~~~~q~ 245 (279)
++|+-+.+--.+.=..|+++|...|+-.+.-||+
T Consensus 3 g~~aa~~LPsI~VPlVglvfPai~Mallf~yIe~ 36 (38)
T 1jb0_I 3 GSYAASFLPWIFIPVVCWLMPTVVMGLLFLYIEG 36 (38)
T ss_dssp CSSTTTTHHHHHHHHHHTHHHHHHHHHHHHHHHC
T ss_pred chhhhhhCChhhHhHHHHHHHHHHHHHHHHhhcc
Confidence 4565555556667779999999999987766654
No 95
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=27.60 E-value=10 Score=30.06 Aligned_cols=49 Identities=16% Similarity=0.265 Sum_probs=30.9
Q ss_pred CCCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHh--cCCccccccc
Q 023641 54 SSPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICR 108 (279)
Q Consensus 54 ~~~~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~--k~~~~CEiCk 108 (279)
........|.+|.+.+ . ..-|..++--+..|..||. +.+ +|.+.|+-|.
T Consensus 10 ~~~~~~~~C~~C~~~G---~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 10 PKQMHEDYCFQCGDGG---E-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp CCCSSCSSCTTTCCCS---E-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred CcCCCCCCCCcCCCCC---c-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 3455677899998443 3 3446522335799999997 443 4677776553
No 96
>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.3
Probab=27.28 E-value=20 Score=21.73 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=12.5
Q ss_pred CCcccccccCCCccccc
Q 023641 72 SNMEIPCSCCGSLKYAH 88 (279)
Q Consensus 72 ~~Li~PC~C~GSlkyVH 88 (279)
+.--.||.|+|-..|..
T Consensus 8 naachpc~c~~rp~yc~ 24 (26)
T 1p1p_A 8 NAACHPCSCKDRPSYCG 24 (26)
T ss_dssp CSSCCTTTSTTCCGGGC
T ss_pred CccccccccCCCCCccC
Confidence 34578999999776643
No 97
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=27.17 E-value=19 Score=25.78 Aligned_cols=34 Identities=38% Similarity=0.796 Sum_probs=20.6
Q ss_pred CCCCCeeeEeccCCCCCCccccc--ccCCCcccccHHHH
Q 023641 56 PSKLVECRICHEEDEDSNMEIPC--SCCGSLKYAHRKCV 92 (279)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~Li~PC--~C~GSlkyVH~~CL 92 (279)
......|-+|.....++..---| .|+ ++.|..|+
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~---~WfH~~Cv 40 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQ---KWFHRICT 40 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTC---CEEEHHHH
T ss_pred CCCcCcCccCCCccCCCCCeEecccCcc---ccCchhcc
Confidence 44566899998875443333344 353 79999997
No 98
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=27.12 E-value=2.9 Score=29.92 Aligned_cols=50 Identities=26% Similarity=0.537 Sum_probs=30.0
Q ss_pred CCCCCCCeeeEeccCCCCCCccc--ccccCCCcccccHHHHHHHHHh--cCCcccccccc
Q 023641 54 SSPSKLVECRICHEEDEDSNMEI--PCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICRE 109 (279)
Q Consensus 54 ~~~~~~~~CRIC~ee~~d~~Li~--PC~C~GSlkyVH~~CL~~W~~~--k~~~~CEiCk~ 109 (279)
..+.+...| ||...+. +.|+. -|.|+ ..+.|..|+. +.. ++.+.|+.|..
T Consensus 6 ~d~~e~~yC-~C~~~~~-g~MI~CD~c~C~--~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 6 IDPNEPTYC-LCNQVSY-GEMIGCDNEQCP--IEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp ----CCEET-TTTEECC-SEEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred cCCCCCcEE-ECCCCCC-CCeeeeeCCCCC--cccEecccCC--cCcCCCCCEECcCccc
Confidence 345566778 8877543 35543 23353 3799999987 332 46788888864
No 99
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=26.83 E-value=38 Score=24.62 Aligned_cols=53 Identities=21% Similarity=0.354 Sum_probs=34.7
Q ss_pred CCCCeeeEeccCCC-CCCcccccccCCCcccccHHHHHHHHHh---cCCcccccccccccc
Q 023641 57 SKLVECRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCNE---KGDTTCEICREQYNP 113 (279)
Q Consensus 57 ~~~~~CRIC~ee~~-d~~Li~PC~C~GSlkyVH~~CL~~W~~~---k~~~~CEiCk~~Y~~ 113 (279)
.+...| ||....+ ++.|+.==.|. .|.|..|+.-=-.. -....|+.|.....+
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQ---DWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTC---CEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCC---CcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 455677 8877654 44565422353 79999998643322 267899999977654
No 100
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=25.74 E-value=7.8 Score=38.03 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=34.7
Q ss_pred CCCCeeeEeccCCC-CCCcccccccCCCcccccHHHHHHHHHh---cCCccccccccccccC
Q 023641 57 SKLVECRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCNE---KGDTTCEICREQYNPG 114 (279)
Q Consensus 57 ~~~~~CRIC~ee~~-d~~Li~PC~C~GSlkyVH~~CL~~W~~~---k~~~~CEiCk~~Y~~~ 114 (279)
.+...| ||....+ ++.|+.=-.|. .|.|..|+.-=-.. -+...|+.|.....+.
T Consensus 35 ~~~~yC-~C~~~~d~~~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~ 92 (488)
T 3kv5_D 35 PPPVYC-VCRQPYDVNRFMIECDICK---DWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSS 92 (488)
T ss_dssp CCCEET-TTTEECCTTSCEEEBTTTC---CEEEHHHHTCCGGGGGGEEEBCCHHHHHHHCSC
T ss_pred CCCeEE-eCCCcCCCCCCeEEccCCC---CceeeeecCcCcccccCCCEEECCCCcCCcCcc
Confidence 445566 8876643 45676533464 79999998532222 1468999999766543
No 101
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=25.17 E-value=5.3 Score=30.23 Aligned_cols=53 Identities=15% Similarity=0.329 Sum_probs=36.5
Q ss_pred CCCeeeEeccCCC--CCCcccccccCCCcccccHHHHHHHHH------hcCCcccccccccccc
Q 023641 58 KLVECRICHEEDE--DSNMEIPCSCCGSLKYAHRKCVQRWCN------EKGDTTCEICREQYNP 113 (279)
Q Consensus 58 ~~~~CRIC~ee~~--d~~Li~PC~C~GSlkyVH~~CL~~W~~------~k~~~~CEiCk~~Y~~ 113 (279)
....|.+|...+. ++.|+. | .+=-+..|..|+.--+. .++.|.|..|....+.
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~-C--D~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVE-C--QECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEE-C--SSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCcCCCCCCCCCCCCCceEE-C--CCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 4678999988754 244443 3 23346789999875543 3589999999877753
No 102
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=24.98 E-value=6.9 Score=32.80 Aligned_cols=49 Identities=22% Similarity=0.440 Sum_probs=33.4
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHh--cCCccccccccccc
Q 023641 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQYN 112 (279)
Q Consensus 58 ~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~--k~~~~CEiCk~~Y~ 112 (279)
....|.+|..+++ |+ - |.+--+..|..|+.--+.. ++.|.|..|...=+
T Consensus 3 ~~~~C~~C~~~g~---ll-~--Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNGGE---LL-C--CEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCCSS---CE-E--CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCCCe---ee-e--cCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 3457999986643 32 2 3444578999998655543 57899999986544
No 103
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=24.33 E-value=6 Score=30.55 Aligned_cols=51 Identities=25% Similarity=0.514 Sum_probs=32.1
Q ss_pred CCCCCCCeeeEeccCCCCCCcc--cccccCCCcccccHHHHHHHHHh--cCCccccc-cccc
Q 023641 54 SSPSKLVECRICHEEDEDSNME--IPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEI-CREQ 110 (279)
Q Consensus 54 ~~~~~~~~CRIC~ee~~d~~Li--~PC~C~GSlkyVH~~CL~~W~~~--k~~~~CEi-Ck~~ 110 (279)
+...+...| ||...+. +.|+ --|.|. ..+.|..||. +.. ++.+.|+. |...
T Consensus 21 ~~~~~~~yC-iC~~~~~-g~MI~CD~c~C~--~eWfH~~CVg--l~~~p~~~W~Cp~cC~~~ 76 (90)
T 2jmi_A 21 NNNQEEVYC-FCRNVSY-GPMVACDNPACP--FEWFHYGCVG--LKQAPKGKWYCSKDCKEI 76 (90)
T ss_dssp ---CCSCCS-TTTCCCS-SSEECCCSSSCS--CSCEETTTSS--CSSCTTSCCCSSHHHHHH
T ss_pred CCCCCCcEE-EeCCCCC-CCEEEecCCCCc--cccCcCccCC--CCcCCCCCccCChhhcch
Confidence 344567788 8987543 3454 334454 3799999986 332 47899999 8743
No 104
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=23.72 E-value=26 Score=18.19 Aligned_cols=12 Identities=17% Similarity=0.739 Sum_probs=9.5
Q ss_pred cccccccccccc
Q 023641 102 TTCEICREQYNP 113 (279)
Q Consensus 102 ~~CEiCk~~Y~~ 113 (279)
..|++|+..|..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 369999998864
No 105
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=22.22 E-value=29 Score=18.22 Aligned_cols=12 Identities=25% Similarity=0.872 Sum_probs=9.8
Q ss_pred cccccccccccc
Q 023641 102 TTCEICREQYNP 113 (279)
Q Consensus 102 ~~CEiCk~~Y~~ 113 (279)
..|++|+..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 479999998864
No 106
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=21.94 E-value=8.6 Score=27.05 Aligned_cols=48 Identities=21% Similarity=0.453 Sum_probs=30.0
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHh--cCCccccccccc
Q 023641 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQ 110 (279)
Q Consensus 57 ~~~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~~--k~~~~CEiCk~~ 110 (279)
.....|.+|.+.+ .|+ - |.+=-+..|..||.--+.+ ++.+.|..|...
T Consensus 7 ~~~~~C~vC~~~g---~ll-~--Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDGG---ELL-C--CDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCCS---SCB-C--CSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCCC---CEE-E--cCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 3466799997643 332 2 2333467899998743332 478889988643
No 107
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=21.69 E-value=29 Score=24.98 Aligned_cols=51 Identities=24% Similarity=0.428 Sum_probs=33.5
Q ss_pred CCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHH-------hcCCcccccccccccc
Q 023641 59 LVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCN-------EKGDTTCEICREQYNP 113 (279)
Q Consensus 59 ~~~CRIC~ee~~d~~Li~PC~C~GSlkyVH~~CL~~W~~-------~k~~~~CEiCk~~Y~~ 113 (279)
...| ||....++..|+.==.|. .|.|..|+.-=.. ......|+.|.....+
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~---~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCE---EWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSC---CEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CCEE-ECCCccCCCCEEEeCCCC---CcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 5678 887776544565422353 7999999843221 2468899999876654
No 108
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=21.51 E-value=4.2 Score=28.70 Aligned_cols=48 Identities=25% Similarity=0.539 Sum_probs=29.6
Q ss_pred CCCCCeeeEeccCCCCCCccc--ccccCCCcccccHHHHHHHHHh--cCCcccccccc
Q 023641 56 PSKLVECRICHEEDEDSNMEI--PCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICRE 109 (279)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~Li~--PC~C~GSlkyVH~~CL~~W~~~--k~~~~CEiCk~ 109 (279)
+.+...| ||...+. +.|+. -|.|. ..+.|..|+. +.. ++.+.|+.|..
T Consensus 6 ~~e~~yC-~C~~~~~-g~mi~CD~~~C~--~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 6 SNEPTYC-LCHQVSY-GEMIGCDNPDCP--IEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp --CCEET-TTTEECC-SEEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCcEE-ECCCCCC-CCeeEeeCCCCC--CCCEecccCC--cccCCCCCEECcCccC
Confidence 4456677 8877653 45542 22343 2699999987 433 36888888864
No 109
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=25.78 E-value=21 Score=18.63 Aligned_cols=13 Identities=23% Similarity=0.695 Sum_probs=10.3
Q ss_pred ccccccccccccC
Q 023641 102 TTCEICREQYNPG 114 (279)
Q Consensus 102 ~~CEiCk~~Y~~~ 114 (279)
..|+.|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 4799999998754
No 110
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=20.34 E-value=80 Score=22.88 Aligned_cols=53 Identities=30% Similarity=0.544 Sum_probs=33.9
Q ss_pred CCCCCCCeeeEeccCCCCCCccccc---ccCCCcccccHHHHHHHHHh-------cCCcccccccccc
Q 023641 54 SSPSKLVECRICHEEDEDSNMEIPC---SCCGSLKYAHRKCVQRWCNE-------KGDTTCEICREQY 111 (279)
Q Consensus 54 ~~~~~~~~CRIC~ee~~d~~Li~PC---~C~GSlkyVH~~CL~~W~~~-------k~~~~CEiCk~~Y 111 (279)
..+.+...| ||...++++.|+. | .|. .|.|..|+.-=-.. .....|+.|+..-
T Consensus 11 ~~~~~~~~C-iC~~~~~~g~MI~-CD~~~C~---~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 11 FQPEIKVRC-VCGNSLETDSMIQ-CEDPRCH---VWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp SSCCCCCCC-SSCCCCCCSCEEE-CSSTTTC---CEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred cCCCCCEEe-ECCCcCCCCCEEE-ECCccCC---ccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 345578889 8988765555553 3 354 49999997532221 1467899887543
No 111
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.24 E-value=30 Score=18.10 Aligned_cols=12 Identities=25% Similarity=0.780 Sum_probs=9.5
Q ss_pred cccccccccccc
Q 023641 102 TTCEICREQYNP 113 (279)
Q Consensus 102 ~~CEiCk~~Y~~ 113 (279)
..|+.|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2m0f_A 3 LKCRECGKQFTT 14 (29)
T ss_dssp EECTTTSCEESC
T ss_pred ccCCCCCCccCC
Confidence 479999988864
Done!