BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023642
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 19/127 (14%)
Query: 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205
+ IR++D+E G +I+ WT+ + SPD ++L + V+I V SG E
Sbjct: 102 AHIRLWDLENGKQIKSIDAGPVDAWTL---AFSPDSQYLATGTHVGKVNIFGVESGKKE- 157
Query: 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI 265
+S G + I S+ +S DG+ L +G+ D I ++D+ KL +
Sbjct: 158 ------------YSLDTRGKF---ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL 202
Query: 266 LAHTVNI 272
H + I
Sbjct: 203 EGHAMPI 209
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 19/124 (15%)
Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191
FS D L V I+IYDV+ L+ W V + + PD H V +S
Sbjct: 214 FSPDSQLLVTASDDGYIKIYDVQHA--NLAGTLSGHASW-VLNVAFCPDDTHFVSSSSDK 270
Query: 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 251
V + DVG+ T +H D ++ +K++ +G ++V+ D I
Sbjct: 271 SVKVWDVGTRTC--------VHTFFDHQDQ--------VWGVKYNGNGSKIVSVGDDQEI 314
Query: 252 YVYD 255
++YD
Sbjct: 315 HIYD 318
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 21/140 (15%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G A I+I+ G K +K I L ++D + S D LV AS
Sbjct: 33 KFSPNGEWLAASSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 89
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 90 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 250 CIYVYDLEANKLSLRILAHT 269
+ ++D++ K + AH+
Sbjct: 133 SVRIWDVKTGKCLKTLPAHS 152
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 217 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 263
Query: 251 IYVYDLEANKLSLRILAHT 269
+Y+++L+ ++ ++ HT
Sbjct: 264 VYIWNLQTKEIVQKLQGHT 282
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIA 273
L F+ A G++ + S+KFS +G L A S+D I ++ K I H + I+
Sbjct: 18 LKFTLA---GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGIS 72
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 16/98 (16%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF 231
V+ SP+ L +S ++ I G E + G+ GI
Sbjct: 29 VSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTIS----------------GHKLGIS 72
Query: 232 SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269
+ +S+D LV+ S D + ++D+ + K + H+
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 110
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 180 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 237
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 238 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 284
Query: 251 IYVYDLEANKLSLRILAHT 269
+Y+++L+ ++ ++ HT
Sbjct: 285 VYIWNLQTKEIVQKLQGHT 303
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 21/140 (15%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 54 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 110
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 111 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 153
Query: 250 CIYVYDLEANKLSLRILAHT 269
+ ++D++ K + AH+
Sbjct: 154 SVRIWDVKTGKCLKTLPAHS 173
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIA 273
G++ + S+KFS +G L + S+D I ++ K I H + I+
Sbjct: 44 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 93
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 178 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 235
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 236 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 282
Query: 251 IYVYDLEANKLSLRILAHT 269
+Y+++L+ ++ ++ HT
Sbjct: 283 VYIWNLQTKEIVQKLQGHT 301
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 21/140 (15%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 52 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 108
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 109 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 151
Query: 250 CIYVYDLEANKLSLRILAHT 269
+ ++D++ K + AH+
Sbjct: 152 SVRIWDVKTGKCLKTLPAHS 171
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIA 273
G++ + S+KFS +G L + S+D I ++ K I H + I+
Sbjct: 42 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 91
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 219
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 220 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 266
Query: 251 IYVYDLEANKLSLRILAHT 269
+Y+++L+ ++ ++ HT
Sbjct: 267 VYIWNLQTKEIVQKLQGHT 285
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 21/140 (15%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 36 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 92
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 93 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 250 CIYVYDLEANKLSLRILAHT 269
+ ++D++ K + AH+
Sbjct: 136 SVRIWDVKTGKCLKTLPAHS 155
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257
+GS +S + + L F+ A G++ + S+KFS +G L + S+D I ++
Sbjct: 3 LGSPEFQSKPTPVKPNYALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 59
Query: 258 ANKLSLRILAHTVNIA 273
K I H + I+
Sbjct: 60 DGKFEKTISGHKLGIS 75
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 173 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 230
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 231 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 277
Query: 251 IYVYDLEANKLSLRILAHT 269
+Y+++L+ ++ ++ HT
Sbjct: 278 VYIWNLQTKEIVQKLQGHT 296
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 21/140 (15%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 47 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 103
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 104 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 146
Query: 250 CIYVYDLEANKLSLRILAHT 269
+ ++D++ K + AH+
Sbjct: 147 SVRIWDVKTGKCLKTLPAHS 166
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 18/127 (14%)
Query: 143 FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202
FQ +Q + V+ + + K LA + V+ SP+ L +S ++ I G
Sbjct: 16 FQGTQSKPTPVKPNYAL-KFTLAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 73
Query: 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 262
E + G+ GI + +S+D LV+ S D + ++D+ + K
Sbjct: 74 FEKTIS----------------GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL 117
Query: 263 LRILAHT 269
+ H+
Sbjct: 118 KTLKGHS 124
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIA 273
L F+ A G++ + S+KFS +G L + S+D I ++ K I H + I+
Sbjct: 31 ALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 86
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 152 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 209
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 210 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 256
Query: 251 IYVYDLEANKLSLRILAHT 269
+Y+++L+ ++ ++ HT
Sbjct: 257 VYIWNLQTKEIVQKLQGHT 275
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 21/140 (15%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 26 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 82
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 83 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 125
Query: 250 CIYVYDLEANKLSLRILAHT 269
+ ++D++ K + AH+
Sbjct: 126 SVRIWDVKTGKCLKTLPAHS 145
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIA 273
L F+ A G++ + S+KFS +G L + S+D I ++ K I H + I+
Sbjct: 10 ALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 65
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 213
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 214 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 260
Query: 251 IYVYDLEANKLSLRILAHT 269
+Y+++L+ ++ ++ HT
Sbjct: 261 VYIWNLQTKEIVQKLQGHT 279
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 21/140 (15%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 30 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 86
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 87 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 250 CIYVYDLEANKLSLRILAHT 269
+ ++D++ K + AH+
Sbjct: 130 SVRIWDVKTGKCLKTLPAHS 149
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIA 273
L F+ A G++ + S+KFS +G L + S+D I ++ K I H + I+
Sbjct: 14 ALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 69
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 219
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 220 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 266
Query: 251 IYVYDLEANKLSLRILAHT 269
+Y+++L+ ++ ++ HT
Sbjct: 267 VYIWNLQTKEIVQKLQGHT 285
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 21/140 (15%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 36 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 92
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 93 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 250 CIYVYDLEANKLSLRILAHT 269
+ ++D++ K + AH+
Sbjct: 136 SVRIWDVKTGKCLKTLPAHS 155
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257
+GS +S + + L F+ A G++ + S+KFS +G L + S+D I ++
Sbjct: 3 LGSSATQSKPTPVKPNYALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 59
Query: 258 ANKLSLRILAHTVNIA 273
K I H + I+
Sbjct: 60 DGKFEKTISGHKLGIS 75
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 213
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 214 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 260
Query: 251 IYVYDLEANKLSLRILAHT 269
+Y+++L+ ++ ++ HT
Sbjct: 261 VYIWNLQTKEIVQKLQGHT 279
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 21/140 (15%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 30 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 86
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 87 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 250 CIYVYDLEANKLSLRILAHT 269
+ ++D++ K + AH+
Sbjct: 130 SVRIWDVKTGKCLKTLPAHS 149
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIA 273
G++ + S+KFS +G L + S+D I ++ K I H + I+
Sbjct: 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 69
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 219
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 220 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 266
Query: 251 IYVYDLEANKLSLRILAHT 269
+Y+++L+ ++ ++ HT
Sbjct: 267 VYIWNLQTKEIVQKLQGHT 285
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 21/140 (15%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 36 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 92
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 93 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 250 CIYVYDLEANKLSLRILAHT 269
+ ++D++ K + AH+
Sbjct: 136 SVRIWDVKTGKCLKTLPAHS 155
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257
+GS +S + + L F+ A G++ + S+KFS +G L + S+D I ++
Sbjct: 3 MGSSATQSKPTPVKPNYALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 59
Query: 258 ANKLSLRILAHTVNIA 273
K I H + I+
Sbjct: 60 DGKFEKTISGHKLGIS 75
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 161 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 218
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 219 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 265
Query: 251 IYVYDLEANKLSLRILAHT 269
+Y+++L+ ++ ++ HT
Sbjct: 266 VYIWNLQTKEIVQKLQGHT 284
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 21/140 (15%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 35 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 91
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 92 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 134
Query: 250 CIYVYDLEANKLSLRILAHT 269
+ ++D++ K + AH+
Sbjct: 135 SVRIWDVKTGKCLKTLPAHS 154
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIA 273
G++ + S+KFS +G L + S+D I ++ K I H + I+
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 74
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 155 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 212
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 213 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 259
Query: 251 IYVYDLEANKLSLRILAHT 269
+Y+++L+ ++ ++ HT
Sbjct: 260 VYIWNLQTKEIVQKLQGHT 278
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 21/140 (15%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 29 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 85
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 86 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 128
Query: 250 CIYVYDLEANKLSLRILAHT 269
+ ++D++ K + AH+
Sbjct: 129 SVRIWDVKTGKCLKTLPAHS 148
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIA 273
L F+ A G++ + S+KFS +G L + S+D I ++ K I H + I+
Sbjct: 14 LKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 68
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 217 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 263
Query: 251 IYVYDLEANKLSLRILAHT 269
+Y+++L+ ++ ++ HT
Sbjct: 264 VYIWNLQTKEIVQKLQGHT 282
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 21/140 (15%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 33 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 89
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 90 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 250 CIYVYDLEANKLSLRILAHT 269
+ ++D++ K + AH+
Sbjct: 133 SVRIWDVKTGKCLKTLPAHS 152
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 16/98 (16%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF 231
V+ SP+ L +S ++ I G E + G+ GI
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS----------------GHKLGIS 72
Query: 232 SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269
+ +S+D LV+ S D + ++D+ + K + H+
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 110
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIA 273
L F+ A G++ + S+KFS +G L + S+D I ++ K I H + I+
Sbjct: 18 LKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 72
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 157 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 214
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 215 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 261
Query: 251 IYVYDLEANKLSLRILAHT 269
+Y+++L+ ++ ++ HT
Sbjct: 262 VYIWNLQTKEIVQKLQGHT 280
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 21/140 (15%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 31 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 87
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 88 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 130
Query: 250 CIYVYDLEANKLSLRILAHT 269
+ ++D++ K + AH+
Sbjct: 131 SVRIWDVKTGKCLKTLPAHS 150
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 260
G+ +S + + L F+ A G++ + S+KFS +G L + S+D I ++ K
Sbjct: 1 GSTQSKPTPVKPNYALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 57
Query: 261 LSLRILAHTVNIA 273
I H + I+
Sbjct: 58 FEKTISGHKLGIS 70
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 217 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 263
Query: 251 IYVYDLEANKLSLRILAHT 269
+Y+++L+ ++ ++ HT
Sbjct: 264 VYIWNLQTKEIVQKLQGHT 282
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 21/140 (15%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 33 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 89
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 90 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 250 CIYVYDLEANKLSLRILAHT 269
+ ++D++ K + AH+
Sbjct: 133 SVRIWDVKTGKCLKTLPAHS 152
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 16/98 (16%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF 231
V+ SP+ L +S ++ I G E + G+ GI
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS----------------GHKLGIS 72
Query: 232 SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269
+ +S+D LV+ S D + ++D+ + K + H+
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 110
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIA 273
L F+ A G++ + S+KFS +G L + S+D I ++ K I H + I+
Sbjct: 18 LKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 72
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 217 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNM 263
Query: 251 IYVYDLEANKLSLRILAHT 269
+Y+++L+ ++ ++ HT
Sbjct: 264 VYIWNLQTKEIVQKLQGHT 282
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 21/140 (15%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 33 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 89
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 90 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 250 CIYVYDLEANKLSLRILAHT 269
+ ++D++ + AH+
Sbjct: 133 SVRIWDVKTGMCLKTLPAHS 152
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 18/133 (13%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187
+ F+ +L V+G +RI+DV+ G K + A S V+ + D +V +
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTG-MCLKTLPAHSD--PVSAVHFNRDGSLIVSS 170
Query: 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247
S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 171 SYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAATL 215
Query: 248 DDCIYVYDLEANK 260
D+ + ++D K
Sbjct: 216 DNTLKLWDYSKGK 228
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIA 273
G++ + S+KFS +G L + S+D I ++ K I H + I+
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 72
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 217 NDLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNM 263
Query: 251 IYVYDLEANKLSLRILAHT 269
+Y+++L+ ++ ++ HT
Sbjct: 264 VYIWNLQTKEIVQKLQGHT 282
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 21/140 (15%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 33 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 89
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 90 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 250 CIYVYDLEANKLSLRILAHT 269
+ ++D++ + AH+
Sbjct: 133 SVRIWDVKTGMCLKTLPAHS 152
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIA 273
G++ + S+KFS +G L + S+D I ++ K I H + I+
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 72
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 69/143 (48%), Gaps = 11/143 (7%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+F G ++ Q Q++I+ V+ G + I R TVTD ++ R+++ AS+
Sbjct: 146 KFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI---GHRATVTDIAIIDRGRNVLSASLD 202
Query: 191 PIVHIVDVGSGTMESLANVTE-IHDGLD----FSAADDGGYSFGI---FSLKFSTDGREL 242
+ + + G+GT N E HDG++ F D + +L+F T G+ +
Sbjct: 203 GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYV 262
Query: 243 VAGSSDDCIYVYDLEANKLSLRI 265
+AG I V+++ + + ++++
Sbjct: 263 IAGHVSGVITVHNVFSKEQTIQL 285
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 69/143 (48%), Gaps = 11/143 (7%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+F G ++ Q Q++I+ V+ G + I R TVTD ++ R+++ AS+
Sbjct: 143 KFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI---GHRATVTDIAIIDRGRNVLSASLD 199
Query: 191 PIVHIVDVGSGTMESLANVTE-IHDGLD----FSAADDGGYSFGI---FSLKFSTDGREL 242
+ + + G+GT N E HDG++ F D + +L+F T G+ +
Sbjct: 200 GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYV 259
Query: 243 VAGSSDDCIYVYDLEANKLSLRI 265
+AG I V+++ + + ++++
Sbjct: 260 IAGHVSGVITVHNVFSKEQTIQL 282
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 61/131 (46%), Gaps = 14/131 (10%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVY 186
Y + G V+G +RI+D+ G + L S+ VT ++SP D +++
Sbjct: 169 YSLDYFPSGDKLVSGSGDRTVRIWDLRTG----QCSLTLSIEDGVTTVAVSPGDGKYIAA 224
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
S+ V + D +G + + LD G+ ++S+ F+ DG+ +V+GS
Sbjct: 225 GSLDRAVRVWDSETGFLV---------ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 275
Query: 247 SDDCIYVYDLE 257
D + +++L+
Sbjct: 276 LDRSVKLWNLQ 286
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNI 272
I S+ FS DG+ L G+ D I ++D+E K+ + + H +I
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI 168
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI 265
G+ I+SL + G +LV+GS D + ++DL + SL +
Sbjct: 163 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 203
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 22/147 (14%)
Query: 127 AYVSQ--FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184
A+VS S +G+ V+ +R+++++ G + Q L + V + SPD R +
Sbjct: 68 AFVSDVALSNNGNFAVSASWDHSLRLWNLQNG-QCQYKFLGHTK--DVLSVAFSPDNRQI 124
Query: 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGREL 242
V + + +V M +L+ G ++ + ++FS D +
Sbjct: 125 VSGGRDNALRVWNVKGECMHTLSR---------------GAHTDWVSCVRFSPSLDAPVI 169
Query: 243 VAGSSDDCIYVYDLEANKLSLRILAHT 269
V+G D+ + V+DL +L + HT
Sbjct: 170 VSGGWDNLVKVWDLATGRLVTDLKGHT 196
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-SLRILAHTVNIALWITCI 279
G++ + S+ FS D R++V+G D+ + V++++ + +L AHT W++C+
Sbjct: 107 GHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTD----WVSCV 158
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 24/136 (17%)
Query: 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178
P + +S A++ +G+ G +++++++DV++ K +++ + S R SLS
Sbjct: 146 PGEYISSVAWIK----EGNYLAVGTSSAEVQLWDVQQQ-KRLRNMTSHSAR----VGSLS 196
Query: 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238
+ L S S +H DV V E H A G+S + L+++ D
Sbjct: 197 WNSYILSSGSRSGHIHHHDV---------RVAEHH------VATLSGHSQEVCGLRWAPD 241
Query: 239 GRELVAGSSDDCIYVY 254
GR L +G +D+ + V+
Sbjct: 242 GRHLASGGNDNLVNVW 257
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 24/136 (17%)
Query: 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178
P + +S A++ +G+ G +++++++DV++ K +++ + S R SLS
Sbjct: 157 PGEYISSVAWIK----EGNYLAVGTSSAEVQLWDVQQQ-KRLRNMTSHSAR----VGSLS 207
Query: 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238
+ L S S +H DV V E H A G+S + L+++ D
Sbjct: 208 WNSYILSSGSRSGHIHHHDV---------RVAEHH------VATLSGHSQEVCGLRWAPD 252
Query: 239 GRELVAGSSDDCIYVY 254
GR L +G +D+ + V+
Sbjct: 253 GRHLASGGNDNLVNVW 268
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 24/136 (17%)
Query: 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178
P + +S A++ +G+ G +++++++DV++ K +++ + S R SLS
Sbjct: 66 PGEYISSVAWIK----EGNYLAVGTSSAEVQLWDVQQQ-KRLRNMTSHSAR----VGSLS 116
Query: 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238
+ L S S +H DV V E H A G+S + L+++ D
Sbjct: 117 WNSYILSSGSRSGHIHHHDV---------RVAEHH------VATLSGHSQEVCGLRWAPD 161
Query: 239 GRELVAGSSDDCIYVY 254
GR L +G +D+ + V+
Sbjct: 162 GRHLASGGNDNLVNVW 177
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 35/56 (62%), Gaps = 5/56 (8%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYD-LEANKLSLRILAHTVNIALWITCI 279
G++ + S+ FS+D R++V+GS D I +++ L K +++ +H + W++C+
Sbjct: 103 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESH----SEWVSCV 154
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNI 272
G+S + + S+DG+ ++GS D + ++DL + R + HT ++
Sbjct: 61 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDV 108
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 35/56 (62%), Gaps = 5/56 (8%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYD-LEANKLSLRILAHTVNIALWITCI 279
G++ + S+ FS+D R++V+GS D I +++ L K +++ +H + W++C+
Sbjct: 126 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESH----SEWVSCV 177
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNI 272
G+S + + S+DG+ ++GS D + ++DL + R + HT ++
Sbjct: 84 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDV 131
>pdb|1JVN|A Chain A, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1JVN|B Chain B, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1OX4|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 187 ASMSPIVHIVDVGSGTMESLANVTE 211
S P+VH++DV SG ++SL N E
Sbjct: 1 GSHMPVVHVIDVESGNLQSLTNAIE 25
>pdb|1OX4|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 187 ASMSPIVHIVDVGSGTMESLANVTE 211
S P+VH++DV SG ++SL N E
Sbjct: 1 GSHMPVVHVIDVESGNLQSLTNAIE 25
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQ-------KDILAKSLRWTVTDTSLSPDQ 181
S FS DG L G +IRI++V G + ++ A W VTD SPD
Sbjct: 1139 CSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGW-VTDVCFSPDS 1197
Query: 182 RHLVYA 187
+ LV A
Sbjct: 1198 KTLVSA 1203
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
QF+ADG ++ + S I++++ W+ + ++ + TV D L D R L + S
Sbjct: 1017 QFTADGKTLISSSEDSVIQVWN----WQTGDYVFLQAHQETVKDFRLLQDSRLLSW-SFD 1071
Query: 191 PIVHIVDVGSGTME 204
V + +V +G +E
Sbjct: 1072 GTVKVWNVITGRIE 1085
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQ-------KDILAKSLRWTVTDTSLSPDQ 181
S FS DG L G +IRI++V G + ++ A W VTD SPD
Sbjct: 1132 CSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGW-VTDVCFSPDS 1190
Query: 182 RHLVYA 187
+ LV A
Sbjct: 1191 KTLVSA 1196
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
QF+ADG ++ + S I++++ W+ + ++ + TV D L D R L + S
Sbjct: 1010 QFTADGKTLISSSEDSVIQVWN----WQTGDYVFLQAHQETVKDFRLLQDSRLLSW-SFD 1064
Query: 191 PIVHIVDVGSGTME 204
V + +V +G +E
Sbjct: 1065 GTVKVWNVITGRIE 1078
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKI--QKDILAKSLRWTVTDTSLSPDQRHL 184
A V+ +S G +AG + +I YDV ++ D+ KS ++D SPD +
Sbjct: 178 ATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS----ISDMQFSPDLTYF 233
Query: 185 VYASMSPIVHIVDVGS 200
+ +S +VDV +
Sbjct: 234 ITSSRDTNSFLVDVST 249
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268
G++ ++SL+F DG +V+GS D I V+D+E + H
Sbjct: 277 GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH 318
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 35/159 (22%)
Query: 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194
D + + G S +R++DV G ++L + L + +V S +
Sbjct: 182 DERVIITGSSDSTVRVWDVNTG-----EMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIA 236
Query: 195 IVDVGSGTMESL----------ANVTEIHDGLDFSAADD-----------------GGYS 227
+ D+ S T +L NV + D SA+ D G+
Sbjct: 237 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK 296
Query: 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266
GI L++ R +V+GSSD+ I ++D+E LR+L
Sbjct: 297 RGIACLQYR--DRLVVSGSSDNTIRLWDIECGA-CLRVL 332
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIAL 274
G++ I+S + + + ++ S D I ++DLE +L + HT + L
Sbjct: 308 GHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGL 357
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNI 272
G+S + + S+DG+ ++GS D + ++DL A + R + HT ++
Sbjct: 428 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDV 475
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/154 (18%), Positives = 63/154 (40%), Gaps = 28/154 (18%)
Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191
FS DG + +++++ R ++ + + S +V + SPD + + AS
Sbjct: 188 FSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSS--SVRGVAFSPDGQTIASASDDK 243
Query: 192 IVHIVDVGSGTMESLANVTEIHDGLDF--------SAADDG----------------GYS 227
V + + +++L + +G+ F SA+DD G+S
Sbjct: 244 TVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 303
Query: 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261
++ + FS DG+ + + S D + +++ L
Sbjct: 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL 337
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/124 (18%), Positives = 53/124 (42%), Gaps = 21/124 (16%)
Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191
FS DG + +++++ R ++ + + S +V + SPD + + AS
Sbjct: 475 FSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSS--SVRGVAFSPDGQTIASASDDK 530
Query: 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 251
V + + +++L G+S ++ + FS DG+ + + SSD +
Sbjct: 531 TVKLWNRNGQLLQTLT-----------------GHSSSVWGVAFSPDGQTIASASSDKTV 573
Query: 252 YVYD 255
+++
Sbjct: 574 KLWN 577
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 228 FGIFSLKFSTDGRELVAGSSDDCIYVYD-LEANKLSL 263
FG S+ FS GR L AG +D I V+D L+ +++S+
Sbjct: 285 FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI 321
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 72/188 (38%), Gaps = 48/188 (25%)
Query: 134 ADGSLFVAGFQASQIRIYDVERG--------------------WKIQKDILAKSLR---- 169
A G + V+G +R++D+++G +K K I+ S
Sbjct: 171 AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230
Query: 170 -WTVTDTSLSPD--QRH---LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 223
W + S PD + H LV+ + + V V G M S+ V+ H + S + D
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG-HGNIVVSGSYD 289
Query: 224 G-----------------GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266
G++ I+S + + + ++ S D I ++DLE +L +
Sbjct: 290 NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ 349
Query: 267 AHTVNIAL 274
HT + L
Sbjct: 350 GHTALVGL 357
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,956,992
Number of Sequences: 62578
Number of extensions: 312738
Number of successful extensions: 1154
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 972
Number of HSP's gapped (non-prelim): 152
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)