Query 023642
Match_columns 279
No_of_seqs 300 out of 2623
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 05:33:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023642.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023642hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.8E-29 4E-34 203.1 15.7 192 85-278 110-418 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 5.7E-29 1.2E-33 202.3 12.7 166 92-276 268-437 (459)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.4E-28 3E-33 200.1 10.2 159 100-277 237-395 (459)
4 KOG0286 G-protein beta subunit 100.0 1.3E-26 2.8E-31 180.8 18.7 187 74-277 39-237 (343)
5 KOG0271 Notchless-like WD40 re 100.0 3.3E-27 7.1E-32 190.2 15.0 142 118-277 109-255 (480)
6 KOG0279 G protein beta subunit 99.9 4.4E-26 9.5E-31 176.8 17.8 176 83-277 56-241 (315)
7 KOG0263 Transcription initiati 99.9 6.8E-27 1.5E-31 203.2 14.4 175 85-278 446-628 (707)
8 KOG0279 G protein beta subunit 99.9 1.2E-25 2.6E-30 174.3 16.7 161 100-278 34-201 (315)
9 KOG0286 G-protein beta subunit 99.9 1E-24 2.2E-29 170.3 18.5 179 82-277 137-323 (343)
10 KOG0263 Transcription initiati 99.9 2.8E-25 6.2E-30 193.2 14.4 180 60-258 447-650 (707)
11 KOG0266 WD40 repeat-containing 99.9 8.4E-24 1.8E-28 185.7 20.7 167 92-277 166-342 (456)
12 KOG0266 WD40 repeat-containing 99.9 4.4E-23 9.6E-28 181.2 20.1 169 92-275 210-382 (456)
13 KOG0284 Polyadenylation factor 99.9 1E-24 2.2E-29 177.0 7.7 165 94-277 147-314 (464)
14 KOG0295 WD40 repeat-containing 99.9 5.6E-23 1.2E-27 164.8 17.4 157 100-275 211-382 (406)
15 KOG0315 G-protein beta subunit 99.9 1.8E-22 3.8E-27 154.6 19.2 182 93-278 48-267 (311)
16 KOG0315 G-protein beta subunit 99.9 1.2E-22 2.7E-27 155.5 17.4 169 92-276 90-307 (311)
17 KOG0293 WD40 repeat-containing 99.9 1E-22 2.2E-27 165.9 17.0 202 74-277 208-490 (519)
18 KOG0285 Pleiotropic regulator 99.9 7.4E-23 1.6E-27 164.0 15.9 177 81-276 142-326 (460)
19 KOG0285 Pleiotropic regulator 99.9 4.6E-23 1E-27 165.1 14.2 141 119-278 146-286 (460)
20 PTZ00420 coronin; Provisional 99.9 4.7E-22 1E-26 175.8 21.9 155 103-274 53-214 (568)
21 KOG0273 Beta-transducin family 99.9 3.3E-22 7.1E-27 165.2 18.2 158 100-277 335-501 (524)
22 PTZ00421 coronin; Provisional 99.9 1.5E-21 3.3E-26 171.5 22.8 139 118-272 69-213 (493)
23 KOG0291 WD40-repeat-containing 99.9 6.5E-22 1.4E-26 171.7 19.3 160 104-266 330-518 (893)
24 KOG0319 WD40-repeat-containing 99.9 1.2E-22 2.6E-27 175.7 14.1 159 100-277 430-597 (775)
25 KOG0645 WD40 repeat protein [G 99.9 1.9E-21 4.1E-26 150.6 18.5 146 118-277 8-158 (312)
26 KOG0282 mRNA splicing factor [ 99.9 1.4E-22 3.1E-27 167.8 12.0 191 83-277 207-482 (503)
27 KOG0275 Conserved WD40 repeat- 99.9 2.9E-23 6.4E-28 164.6 7.2 167 92-276 220-399 (508)
28 KOG0265 U5 snRNP-specific prot 99.9 1.7E-21 3.6E-26 152.9 15.9 165 92-276 54-223 (338)
29 KOG0645 WD40 repeat protein [G 99.9 1.6E-20 3.6E-25 145.4 20.0 163 100-277 33-203 (312)
30 KOG0318 WD40 repeat stress pro 99.9 2.1E-20 4.5E-25 156.5 20.6 177 101-277 167-371 (603)
31 KOG0273 Beta-transducin family 99.9 2.3E-20 5E-25 154.4 20.3 162 100-278 253-461 (524)
32 KOG0284 Polyadenylation factor 99.9 3.1E-22 6.8E-27 162.7 8.7 158 102-278 116-273 (464)
33 KOG0316 Conserved WD40 repeat- 99.9 4E-21 8.6E-26 146.2 13.4 179 93-274 25-230 (307)
34 KOG0276 Vesicle coat complex C 99.9 3.7E-21 8.1E-26 164.0 13.7 159 100-276 73-234 (794)
35 KOG0277 Peroxisomal targeting 99.9 2.2E-20 4.8E-25 143.6 15.0 159 100-277 79-242 (311)
36 KOG0319 WD40-repeat-containing 99.9 2.3E-20 5E-25 161.8 16.1 177 84-276 359-554 (775)
37 KOG0291 WD40-repeat-containing 99.9 3E-20 6.5E-25 161.5 16.4 159 92-268 357-561 (893)
38 KOG0318 WD40 repeat stress pro 99.8 2.2E-19 4.8E-24 150.5 19.9 188 91-278 196-539 (603)
39 KOG0295 WD40 repeat-containing 99.8 4.4E-20 9.6E-25 148.3 13.7 175 84-277 144-342 (406)
40 KOG0276 Vesicle coat complex C 99.8 3.1E-20 6.7E-25 158.4 13.5 159 100-277 115-277 (794)
41 KOG0313 Microtubule binding pr 99.8 8.6E-20 1.9E-24 147.4 15.3 176 100-276 165-396 (423)
42 KOG0281 Beta-TrCP (transducin 99.8 9.2E-21 2E-25 151.6 9.5 155 100-276 213-367 (499)
43 KOG0281 Beta-TrCP (transducin 99.8 4E-21 8.6E-26 153.7 6.6 171 83-275 230-406 (499)
44 KOG0646 WD40 repeat protein [G 99.8 1.2E-19 2.7E-24 149.9 15.3 184 93-276 89-326 (476)
45 PTZ00421 coronin; Provisional 99.8 1.7E-18 3.7E-23 152.3 23.2 174 100-276 94-310 (493)
46 KOG0282 mRNA splicing factor [ 99.8 3.7E-21 8.1E-26 159.4 5.7 145 112-276 202-349 (503)
47 KOG0643 Translation initiation 99.8 5.9E-19 1.3E-23 136.7 17.2 161 100-276 28-238 (327)
48 KOG0289 mRNA splicing factor [ 99.8 4.3E-19 9.3E-24 145.6 17.3 160 100-276 279-439 (506)
49 KOG0292 Vesicle coat complex C 99.8 3.4E-19 7.4E-24 157.5 17.9 180 93-275 59-298 (1202)
50 KOG1407 WD40 repeat protein [F 99.8 7.1E-19 1.5E-23 135.8 16.0 174 100-277 38-239 (313)
51 KOG0265 U5 snRNP-specific prot 99.8 3.8E-19 8.2E-24 139.7 14.3 130 119-266 42-172 (338)
52 KOG0296 Angio-associated migra 99.8 1.7E-18 3.7E-23 139.3 17.7 148 100-266 82-229 (399)
53 KOG0294 WD40 repeat-containing 99.8 2.4E-18 5.1E-23 136.2 17.9 175 100-278 59-306 (362)
54 cd00200 WD40 WD40 domain, foun 99.8 8E-18 1.7E-22 137.8 21.7 159 100-277 27-185 (289)
55 KOG0283 WD40 repeat-containing 99.8 6.7E-19 1.5E-23 154.8 15.4 125 120-266 365-490 (712)
56 KOG0296 Angio-associated migra 99.8 2.3E-18 5E-23 138.5 16.7 139 117-274 57-195 (399)
57 KOG0643 Translation initiation 99.8 3.8E-18 8.3E-23 132.2 17.1 157 117-276 3-197 (327)
58 KOG1446 Histone H3 (Lys4) meth 99.8 3.9E-18 8.5E-23 135.0 17.3 168 103-275 79-281 (311)
59 KOG0274 Cdc4 and related F-box 99.8 2.6E-18 5.7E-23 151.6 18.2 155 100-277 224-379 (537)
60 KOG0308 Conserved WD40 repeat- 99.8 1.2E-18 2.6E-23 149.4 15.4 162 100-277 91-263 (735)
61 KOG0264 Nucleosome remodeling 99.8 1.6E-18 3.4E-23 142.9 15.6 145 119-277 172-324 (422)
62 KOG0278 Serine/threonine kinas 99.8 1.2E-19 2.5E-24 139.4 8.2 158 101-261 78-301 (334)
63 cd00200 WD40 WD40 domain, foun 99.8 1E-17 2.2E-22 137.2 20.5 159 100-277 69-227 (289)
64 PTZ00420 coronin; Provisional 99.8 9.4E-18 2E-22 148.7 21.4 147 100-266 93-258 (568)
65 KOG0647 mRNA export protein (c 99.8 1.2E-18 2.7E-23 137.0 14.0 173 100-276 46-300 (347)
66 PLN00181 protein SPA1-RELATED; 99.8 6E-18 1.3E-22 158.8 21.2 158 100-277 551-716 (793)
67 KOG0275 Conserved WD40 repeat- 99.8 4.1E-20 8.8E-25 146.8 5.2 142 121-277 210-356 (508)
68 PLN00181 protein SPA1-RELATED; 99.8 1.3E-17 2.8E-22 156.6 22.8 166 92-277 490-669 (793)
69 KOG0305 Anaphase promoting com 99.8 1.3E-18 2.8E-23 149.0 14.6 157 100-259 276-463 (484)
70 KOG0316 Conserved WD40 repeat- 99.8 1.8E-18 4E-23 131.8 13.6 144 114-276 7-152 (307)
71 KOG0292 Vesicle coat complex C 99.8 8.6E-19 1.9E-23 155.0 13.6 136 103-257 30-165 (1202)
72 KOG0277 Peroxisomal targeting 99.8 4.5E-19 9.8E-24 136.4 10.4 158 100-275 123-284 (311)
73 KOG0302 Ribosome Assembly prot 99.8 1.1E-18 2.5E-23 140.9 13.2 147 97-257 225-378 (440)
74 KOG0267 Microtubule severing p 99.8 1.3E-19 2.9E-24 156.8 8.3 154 103-275 49-202 (825)
75 KOG0302 Ribosome Assembly prot 99.8 1.6E-18 3.4E-23 140.1 13.5 164 100-277 171-355 (440)
76 KOG0288 WD40 repeat protein Ti 99.8 1E-18 2.2E-23 142.6 12.3 167 100-278 237-440 (459)
77 KOG0640 mRNA cleavage stimulat 99.8 6.3E-19 1.4E-23 139.3 10.2 166 91-270 118-305 (430)
78 KOG0264 Nucleosome remodeling 99.8 4.6E-18 9.9E-23 140.2 15.1 153 100-257 246-404 (422)
79 KOG0310 Conserved WD40 repeat- 99.8 3.7E-18 8E-23 142.0 14.5 165 92-276 75-245 (487)
80 KOG0289 mRNA splicing factor [ 99.8 5.8E-18 1.3E-22 139.1 15.4 161 100-277 237-397 (506)
81 KOG0283 WD40 repeat-containing 99.8 9.6E-18 2.1E-22 147.7 17.4 178 81-271 360-546 (712)
82 KOG0647 mRNA export protein (c 99.8 4E-18 8.7E-23 134.2 13.4 127 122-267 25-155 (347)
83 KOG0293 WD40 repeat-containing 99.8 1.7E-18 3.6E-23 141.5 11.1 139 113-267 213-351 (519)
84 KOG0269 WD40 repeat-containing 99.8 4.7E-18 1E-22 148.3 12.6 143 100-260 106-253 (839)
85 KOG0274 Cdc4 and related F-box 99.8 9.8E-18 2.1E-22 148.0 14.7 153 100-276 307-461 (537)
86 KOG1407 WD40 repeat protein [F 99.8 6.5E-17 1.4E-21 125.1 17.2 160 100-277 83-280 (313)
87 KOG0640 mRNA cleavage stimulat 99.8 1.4E-17 3E-22 131.7 13.0 155 100-268 190-346 (430)
88 KOG0772 Uncharacterized conser 99.8 2.3E-18 4.9E-23 144.2 9.0 135 120-267 264-405 (641)
89 KOG0310 Conserved WD40 repeat- 99.8 4.3E-17 9.4E-22 135.6 16.3 154 101-275 130-285 (487)
90 KOG0306 WD40-repeat-containing 99.7 6.6E-17 1.4E-21 140.9 16.7 177 82-277 446-642 (888)
91 KOG0267 Microtubule severing p 99.7 3.7E-18 7.9E-23 148.0 8.4 158 100-276 88-245 (825)
92 KOG0641 WD40 repeat protein [G 99.7 9.9E-17 2.1E-21 121.8 14.9 148 121-277 86-281 (350)
93 KOG0305 Anaphase promoting com 99.7 4.1E-17 8.9E-22 139.8 14.4 159 100-278 193-352 (484)
94 KOG1332 Vesicle coat complex C 99.7 3.2E-17 6.9E-22 125.7 11.6 165 100-278 29-216 (299)
95 KOG0303 Actin-binding protein 99.7 2.4E-17 5.2E-22 134.1 11.2 136 119-271 76-217 (472)
96 KOG0269 WD40 repeat-containing 99.7 3.3E-17 7.1E-22 143.1 12.6 161 100-277 152-317 (839)
97 KOG0306 WD40-repeat-containing 99.7 6.5E-17 1.4E-21 140.9 14.1 148 92-258 515-665 (888)
98 KOG0973 Histone transcription 99.7 1.6E-16 3.5E-21 143.5 16.9 173 92-277 76-273 (942)
99 KOG0308 Conserved WD40 repeat- 99.7 2E-17 4.2E-22 142.0 10.1 170 100-277 43-221 (735)
100 KOG0973 Histone transcription 99.7 1.1E-16 2.5E-21 144.4 14.6 153 102-270 35-214 (942)
101 KOG1273 WD40 repeat protein [G 99.7 2.4E-16 5.3E-21 125.0 14.5 148 127-277 26-204 (405)
102 KOG1274 WD40 repeat protein [G 99.7 4.5E-16 9.7E-21 138.4 17.1 160 85-258 96-263 (933)
103 KOG0772 Uncharacterized conser 99.7 1.7E-16 3.6E-21 133.2 12.6 159 100-271 287-459 (641)
104 KOG2096 WD40 repeat protein [G 99.7 4.2E-16 9.1E-21 123.8 13.2 138 119-257 81-308 (420)
105 KOG0300 WD40 repeat-containing 99.7 8.9E-16 1.9E-20 122.0 14.8 181 81-277 139-365 (481)
106 KOG4283 Transcription-coupled 99.7 6.6E-16 1.4E-20 121.6 13.1 146 116-278 35-197 (397)
107 KOG0301 Phospholipase A2-activ 99.7 1.4E-15 3E-20 131.6 15.4 186 60-276 74-266 (745)
108 KOG0641 WD40 repeat protein [G 99.7 1.1E-14 2.4E-19 110.8 18.0 154 101-272 160-322 (350)
109 KOG0294 WD40 repeat-containing 99.7 9.4E-16 2E-20 121.6 12.6 127 118-265 37-165 (362)
110 KOG1539 WD repeat protein [Gen 99.7 8.1E-15 1.8E-19 129.3 19.7 165 102-266 420-615 (910)
111 KOG4283 Transcription-coupled 99.7 1.2E-15 2.5E-20 120.2 12.7 154 100-260 120-279 (397)
112 KOG0639 Transducin-like enhanc 99.7 3.9E-16 8.5E-21 130.7 9.8 172 92-266 472-672 (705)
113 KOG0301 Phospholipase A2-activ 99.7 1.5E-15 3.1E-20 131.5 13.1 150 100-276 77-226 (745)
114 KOG0299 U3 snoRNP-associated p 99.7 5.5E-15 1.2E-19 122.5 15.5 182 92-277 209-433 (479)
115 KOG1273 WD40 repeat protein [G 99.6 6.7E-15 1.4E-19 116.9 14.8 151 88-257 26-226 (405)
116 KOG1009 Chromatin assembly com 99.6 4.8E-15 1E-19 121.1 13.7 152 124-277 13-173 (434)
117 KOG0268 Sof1-like rRNA process 99.6 2.6E-15 5.6E-20 121.1 11.8 143 105-262 168-350 (433)
118 KOG0299 U3 snoRNP-associated p 99.6 1.2E-15 2.7E-20 126.2 10.2 142 118-275 136-292 (479)
119 KOG1063 RNA polymerase II elon 99.6 2.2E-15 4.8E-20 130.4 12.1 146 118-278 519-673 (764)
120 KOG1332 Vesicle coat complex C 99.6 1.4E-15 2.9E-20 116.8 9.6 145 120-278 7-158 (299)
121 KOG0313 Microtubule binding pr 99.6 6.7E-15 1.4E-19 119.4 13.7 196 65-268 86-300 (423)
122 KOG0300 WD40 repeat-containing 99.6 5.5E-16 1.2E-20 123.2 7.4 156 118-276 142-321 (481)
123 KOG1036 Mitotic spindle checkp 99.6 1.8E-14 3.9E-19 114.0 14.6 172 100-277 31-282 (323)
124 KOG1446 Histone H3 (Lys4) meth 99.6 1.3E-13 2.9E-18 109.5 19.4 178 91-271 20-231 (311)
125 KOG2394 WD40 protein DMR-N9 [G 99.6 8.1E-15 1.8E-19 123.8 12.9 138 124-277 219-382 (636)
126 PF08662 eIF2A: Eukaryotic tra 99.6 1.6E-13 3.4E-18 106.9 18.4 119 123-266 58-187 (194)
127 KOG0278 Serine/threonine kinas 99.6 8.1E-15 1.8E-19 113.0 10.1 156 116-275 6-190 (334)
128 KOG0268 Sof1-like rRNA process 99.6 1.9E-14 4.1E-19 116.2 12.7 162 100-264 85-309 (433)
129 KOG2096 WD40 repeat protein [G 99.6 2.7E-14 5.8E-19 113.7 13.3 154 100-255 205-400 (420)
130 KOG0288 WD40 repeat protein Ti 99.6 3.1E-14 6.8E-19 116.6 14.1 138 102-254 320-458 (459)
131 KOG4378 Nuclear protein COP1 [ 99.6 2.9E-14 6.2E-19 119.5 13.6 131 129-278 169-302 (673)
132 KOG0646 WD40 repeat protein [G 99.6 3.7E-14 8.1E-19 117.8 14.0 161 105-276 62-224 (476)
133 KOG0771 Prolactin regulatory e 99.6 5.2E-14 1.1E-18 115.7 14.5 147 128-278 148-333 (398)
134 KOG2048 WD40 repeat protein [G 99.6 1.4E-13 3.1E-18 119.1 17.8 173 95-277 79-253 (691)
135 KOG0270 WD40 repeat-containing 99.6 1.4E-14 3E-19 119.7 11.1 138 121-277 240-381 (463)
136 KOG1009 Chromatin assembly com 99.6 2.2E-14 4.9E-19 117.3 12.2 146 100-261 32-199 (434)
137 KOG1408 WD40 repeat protein [F 99.6 2.8E-14 6.1E-19 124.3 12.8 171 92-277 466-691 (1080)
138 KOG1539 WD repeat protein [Gen 99.6 1.3E-13 2.8E-18 121.9 16.6 140 102-258 468-649 (910)
139 KOG0642 Cell-cycle nuclear pro 99.6 5.1E-14 1.1E-18 119.5 13.4 171 100-270 312-574 (577)
140 KOG1408 WD40 repeat protein [F 99.6 9.6E-14 2.1E-18 121.1 15.2 183 58-258 517-714 (1080)
141 KOG4328 WD40 protein [Function 99.6 2.9E-14 6.4E-19 118.2 11.5 161 118-278 180-378 (498)
142 KOG1445 Tumor-specific antigen 99.6 1.3E-14 2.9E-19 124.8 9.7 121 124-260 627-753 (1012)
143 KOG1034 Transcriptional repres 99.6 3.2E-14 7E-19 113.6 11.1 94 107-200 118-212 (385)
144 KOG0322 G-protein beta subunit 99.6 2.3E-14 4.9E-19 111.3 9.3 139 101-256 172-322 (323)
145 KOG1036 Mitotic spindle checkp 99.5 1.8E-13 4E-18 108.4 14.0 122 123-266 12-133 (323)
146 KOG0639 Transducin-like enhanc 99.5 6.7E-14 1.4E-18 117.5 11.4 152 101-256 528-703 (705)
147 KOG1034 Transcriptional repres 99.5 1.1E-13 2.3E-18 110.6 11.7 121 122-258 87-212 (385)
148 KOG2048 WD40 repeat protein [G 99.5 1.6E-12 3.6E-17 112.6 19.6 148 100-265 43-192 (691)
149 KOG0644 Uncharacterized conser 99.5 2.7E-14 5.8E-19 126.2 8.4 232 4-271 141-441 (1113)
150 KOG2919 Guanine nucleotide-bin 99.5 3.5E-13 7.5E-18 107.6 13.7 178 84-276 157-347 (406)
151 TIGR03866 PQQ_ABC_repeats PQQ- 99.5 3.3E-12 7.1E-17 106.3 20.5 134 125-276 157-297 (300)
152 KOG0270 WD40 repeat-containing 99.5 3.5E-13 7.6E-18 111.5 14.1 141 100-259 262-406 (463)
153 TIGR03866 PQQ_ABC_repeats PQQ- 99.5 2.7E-12 6E-17 106.8 19.9 161 101-266 8-196 (300)
154 KOG1274 WD40 repeat protein [G 99.5 8E-13 1.7E-17 118.1 17.3 157 100-267 72-228 (933)
155 KOG2055 WD40 repeat protein [G 99.5 4.8E-13 1E-17 111.2 14.4 134 122-257 342-512 (514)
156 KOG1007 WD repeat protein TSSC 99.5 3.6E-13 7.7E-18 106.0 12.8 159 102-278 142-339 (370)
157 KOG0649 WD40 repeat protein [G 99.5 2E-12 4.3E-17 99.6 16.0 167 99-277 76-257 (325)
158 KOG2394 WD40 protein DMR-N9 [G 99.5 1.2E-13 2.6E-18 116.8 9.8 94 124-236 290-383 (636)
159 KOG0307 Vesicle coat complex C 99.5 1.4E-13 2.9E-18 125.5 10.8 178 100-278 86-305 (1049)
160 KOG1310 WD40 repeat protein [G 99.5 1E-13 2.2E-18 117.6 9.3 136 115-258 41-179 (758)
161 KOG2445 Nuclear pore complex c 99.5 1E-11 2.2E-16 98.6 19.6 177 100-277 31-296 (361)
162 KOG0290 Conserved WD40 repeat- 99.5 1.4E-12 3.1E-17 102.7 14.7 160 99-258 116-319 (364)
163 KOG1007 WD repeat protein TSSC 99.5 3.6E-13 7.9E-18 106.0 10.7 138 122-276 121-265 (370)
164 KOG2110 Uncharacterized conser 99.5 3.5E-12 7.5E-17 103.5 16.0 140 103-259 105-250 (391)
165 KOG0321 WD40 repeat-containing 99.5 3.8E-13 8.3E-18 115.8 11.0 140 120-260 96-251 (720)
166 KOG0642 Cell-cycle nuclear pro 99.5 3.5E-13 7.5E-18 114.6 10.4 137 119-261 289-430 (577)
167 KOG1063 RNA polymerase II elon 99.4 2.2E-12 4.7E-17 112.2 14.0 141 105-257 553-699 (764)
168 KOG0771 Prolactin regulatory e 99.4 1.8E-12 3.9E-17 106.7 12.9 151 92-258 151-355 (398)
169 KOG0650 WD40 repeat nucleolar 99.4 1.8E-12 4E-17 111.0 13.4 164 114-277 390-658 (733)
170 KOG2110 Uncharacterized conser 99.4 1.9E-11 4E-16 99.4 18.3 166 103-269 152-344 (391)
171 KOG1538 Uncharacterized conser 99.4 8.1E-13 1.8E-17 114.6 10.5 165 89-278 16-185 (1081)
172 KOG0303 Actin-binding protein 99.4 2.2E-12 4.7E-17 105.6 11.9 140 100-258 100-250 (472)
173 KOG0321 WD40 repeat-containing 99.4 3.2E-12 6.9E-17 110.3 12.7 164 100-268 118-314 (720)
174 KOG2055 WD40 repeat protein [G 99.4 1.6E-11 3.4E-16 102.4 16.2 143 124-267 213-384 (514)
175 KOG4328 WD40 protein [Function 99.4 6.4E-12 1.4E-16 104.5 13.4 151 117-278 315-472 (498)
176 KOG2445 Nuclear pore complex c 99.4 1.8E-11 3.9E-16 97.3 15.3 133 120-259 9-146 (361)
177 KOG2106 Uncharacterized conser 99.4 3E-11 6.4E-16 101.9 17.2 135 117-275 361-497 (626)
178 KOG1445 Tumor-specific antigen 99.4 1.8E-12 3.8E-17 112.0 9.3 138 118-271 73-215 (1012)
179 COG2319 FOG: WD40 repeat [Gene 99.4 9.5E-11 2.1E-15 100.9 20.1 155 103-276 133-291 (466)
180 KOG0649 WD40 repeat protein [G 99.4 3.5E-11 7.7E-16 92.8 14.5 129 120-268 58-197 (325)
181 KOG4227 WD40 repeat protein [G 99.4 5.8E-12 1.3E-16 103.1 10.7 126 119-260 51-182 (609)
182 KOG2106 Uncharacterized conser 99.4 1.3E-10 2.8E-15 98.1 18.3 187 66-256 389-625 (626)
183 KOG0974 WD-repeat protein WDR6 99.3 1.2E-11 2.6E-16 112.0 12.8 139 100-258 151-289 (967)
184 KOG0307 Vesicle coat complex C 99.3 4.7E-12 1E-16 115.7 10.3 156 123-278 63-262 (1049)
185 KOG1188 WD40 repeat protein [G 99.3 2E-11 4.2E-16 98.3 12.5 142 102-258 48-197 (376)
186 KOG0644 Uncharacterized conser 99.3 6E-13 1.3E-17 117.9 4.2 115 120-257 186-300 (1113)
187 KOG1523 Actin-related protein 99.3 3.4E-11 7.4E-16 96.2 12.2 122 123-258 9-131 (361)
188 COG2319 FOG: WD40 repeat [Gene 99.3 8.2E-10 1.8E-14 95.1 21.0 155 103-276 177-335 (466)
189 KOG1524 WD40 repeat-containing 99.3 4.2E-11 9.1E-16 101.7 12.0 140 116-277 96-235 (737)
190 PRK01742 tolB translocation pr 99.3 1.6E-10 3.4E-15 101.5 16.1 132 104-257 184-322 (429)
191 KOG1523 Actin-related protein 99.3 4.2E-11 9.2E-16 95.7 10.7 128 117-256 48-175 (361)
192 PF08662 eIF2A: Eukaryotic tra 99.3 4.6E-10 9.9E-15 87.5 16.0 119 128-266 9-142 (194)
193 KOG2919 Guanine nucleotide-bin 99.3 3.3E-10 7.1E-15 90.8 15.1 175 93-278 57-259 (406)
194 PRK05137 tolB translocation pr 99.3 1.2E-09 2.7E-14 96.0 20.3 127 114-261 191-326 (435)
195 KOG3881 Uncharacterized conser 99.3 1.2E-10 2.6E-15 95.4 12.5 145 104-265 173-328 (412)
196 PRK01742 tolB translocation pr 99.3 2E-10 4.3E-15 100.8 14.7 162 92-277 254-423 (429)
197 KOG2111 Uncharacterized conser 99.2 9E-10 2E-14 88.1 16.6 85 117-202 174-259 (346)
198 KOG1587 Cytoplasmic dynein int 99.2 2.7E-10 5.9E-15 100.7 14.8 174 105-278 223-450 (555)
199 KOG2139 WD40 repeat protein [G 99.2 8.4E-10 1.8E-14 89.8 16.0 139 100-257 116-268 (445)
200 PRK04922 tolB translocation pr 99.2 1.6E-09 3.4E-14 95.4 18.5 145 114-262 193-373 (433)
201 KOG2111 Uncharacterized conser 99.2 9.9E-10 2.1E-14 87.9 15.0 141 103-258 112-257 (346)
202 KOG1963 WD40 repeat protein [G 99.2 4.5E-10 9.8E-15 100.4 13.6 149 101-267 178-332 (792)
203 PRK03629 tolB translocation pr 99.2 2.9E-09 6.3E-14 93.4 18.5 154 119-277 237-425 (429)
204 KOG0650 WD40 repeat nucleolar 99.2 7.7E-11 1.7E-15 101.3 8.1 145 99-254 582-732 (733)
205 PRK03629 tolB translocation pr 99.2 6.3E-09 1.4E-13 91.3 20.4 126 115-261 189-323 (429)
206 KOG4378 Nuclear protein COP1 [ 99.2 1E-10 2.3E-15 98.5 8.5 160 101-278 54-217 (673)
207 PRK02889 tolB translocation pr 99.2 5.4E-09 1.2E-13 91.8 19.1 173 86-262 155-365 (427)
208 KOG4547 WD40 repeat-containing 99.2 6.4E-09 1.4E-13 89.5 18.6 123 136-277 70-192 (541)
209 KOG0322 G-protein beta subunit 99.1 4.2E-10 9.2E-15 87.9 9.9 144 123-278 149-302 (323)
210 KOG1188 WD40 repeat protein [G 99.1 1.1E-09 2.3E-14 88.4 12.1 152 100-266 90-251 (376)
211 KOG1240 Protein kinase contain 99.1 3.3E-09 7.2E-14 98.2 16.3 159 120-278 1044-1247(1431)
212 PRK11028 6-phosphogluconolacto 99.1 1.5E-08 3.2E-13 86.0 18.6 158 93-259 87-260 (330)
213 KOG2321 WD40 repeat protein [G 99.1 2.7E-09 5.8E-14 91.6 13.3 156 104-276 155-320 (703)
214 KOG1272 WD40-repeat-containing 99.1 2.2E-10 4.7E-15 95.9 6.5 130 118-267 204-333 (545)
215 PRK11028 6-phosphogluconolacto 99.1 2.3E-08 5.1E-13 84.8 19.2 122 125-257 80-205 (330)
216 KOG1310 WD40 repeat protein [G 99.1 5.1E-10 1.1E-14 95.5 8.6 166 84-256 44-230 (758)
217 KOG0290 Conserved WD40 repeat- 99.1 9.4E-09 2E-13 81.5 14.8 136 100-246 169-355 (364)
218 PRK05137 tolB translocation pr 99.0 2.2E-08 4.8E-13 88.2 18.1 135 104-260 226-369 (435)
219 PRK00178 tolB translocation pr 99.0 3.3E-08 7.1E-13 87.0 18.9 128 114-262 188-324 (430)
220 TIGR02800 propeller_TolB tol-p 99.0 3.4E-08 7.4E-13 86.5 18.7 127 114-261 179-314 (417)
221 KOG0974 WD-repeat protein WDR6 99.0 3E-09 6.5E-14 96.9 11.6 120 130-270 139-258 (967)
222 PRK04792 tolB translocation pr 99.0 3.5E-08 7.5E-13 87.1 18.0 159 83-262 171-343 (448)
223 KOG1963 WD40 repeat protein [G 99.0 1.7E-08 3.7E-13 90.6 15.9 167 91-266 211-384 (792)
224 KOG4497 Uncharacterized conser 99.0 3.9E-09 8.4E-14 85.1 9.9 171 91-265 14-248 (447)
225 KOG4227 WD40 repeat protein [G 99.0 1.7E-08 3.7E-13 83.2 13.7 152 92-258 63-226 (609)
226 KOG1524 WD40 repeat-containing 99.0 1.8E-08 3.8E-13 86.1 14.2 149 100-253 122-282 (737)
227 KOG2139 WD40 repeat protein [G 99.0 1E-08 2.2E-13 83.6 12.2 104 122-246 194-299 (445)
228 PF02239 Cytochrom_D1: Cytochr 99.0 1.6E-07 3.4E-12 80.6 19.2 145 118-266 30-211 (369)
229 PRK02889 tolB translocation pr 98.9 9E-08 1.9E-12 84.1 17.5 161 92-275 246-420 (427)
230 KOG1538 Uncharacterized conser 98.9 3.3E-09 7.2E-14 92.7 7.9 109 126-257 14-122 (1081)
231 PRK04922 tolB translocation pr 98.9 1E-07 2.3E-12 83.9 17.5 146 106-275 274-428 (433)
232 KOG1272 WD40-repeat-containing 98.9 3.5E-09 7.7E-14 88.7 7.4 115 119-255 246-360 (545)
233 KOG1334 WD40 repeat protein [G 98.9 1.6E-08 3.4E-13 85.4 10.7 104 100-203 160-267 (559)
234 KOG4532 WD40-like repeat conta 98.9 6E-07 1.3E-11 70.8 18.7 128 127-266 161-291 (344)
235 KOG2315 Predicted translation 98.9 1.4E-07 3.1E-12 81.0 16.6 178 60-262 173-394 (566)
236 KOG1517 Guanine nucleotide bin 98.9 3.2E-08 7E-13 90.7 13.3 133 122-267 1206-1342(1387)
237 TIGR02800 propeller_TolB tol-p 98.9 2.7E-07 5.8E-12 80.9 18.6 135 105-261 215-358 (417)
238 KOG1587 Cytoplasmic dynein int 98.9 3E-08 6.4E-13 88.0 12.0 123 119-258 393-517 (555)
239 PRK01029 tolB translocation pr 98.9 2.4E-07 5.1E-12 81.3 17.4 121 125-265 281-411 (428)
240 KOG3914 WD repeat protein WDR4 98.9 1.9E-08 4.1E-13 83.0 9.5 119 128-266 111-232 (390)
241 PF02239 Cytochrom_D1: Cytochr 98.8 1.5E-07 3.2E-12 80.7 15.3 112 137-268 6-119 (369)
242 KOG1517 Guanine nucleotide bin 98.8 1.3E-07 2.8E-12 86.9 14.7 144 100-258 1129-1288(1387)
243 PF00400 WD40: WD domain, G-be 98.8 1.8E-08 3.9E-13 56.8 5.6 35 118-152 5-39 (39)
244 COG4946 Uncharacterized protei 98.8 1.5E-06 3.2E-11 73.7 18.9 128 117-264 352-484 (668)
245 KOG3881 Uncharacterized conser 98.8 3.9E-07 8.4E-12 75.2 14.8 137 125-276 149-297 (412)
246 KOG1334 WD40 repeat protein [G 98.8 2.2E-08 4.8E-13 84.6 7.7 132 117-264 135-270 (559)
247 PRK01029 tolB translocation pr 98.8 8.7E-07 1.9E-11 77.7 18.1 128 117-263 223-365 (428)
248 KOG2695 WD40 repeat protein [G 98.8 3.5E-08 7.6E-13 80.1 8.4 131 123-268 251-387 (425)
249 PRK00178 tolB translocation pr 98.8 1.1E-06 2.4E-11 77.4 18.2 121 120-261 238-367 (430)
250 KOG0280 Uncharacterized conser 98.7 4.8E-07 1E-11 72.1 13.8 123 127-264 124-249 (339)
251 PRK04792 tolB translocation pr 98.7 1.5E-06 3.2E-11 76.8 18.1 121 120-261 257-386 (448)
252 KOG1354 Serine/threonine prote 98.7 4.8E-08 1E-12 79.3 7.7 142 121-269 161-314 (433)
253 KOG3914 WD repeat protein WDR4 98.7 6.2E-08 1.3E-12 80.0 7.6 86 116-204 143-228 (390)
254 KOG1409 Uncharacterized conser 98.7 1.6E-07 3.4E-12 76.4 9.6 83 119-203 192-274 (404)
255 KOG4714 Nucleoporin [Nuclear s 98.7 1.9E-07 4.1E-12 73.2 9.2 96 104-201 159-256 (319)
256 PF00400 WD40: WD domain, G-be 98.7 1.1E-07 2.4E-12 53.4 5.9 34 164-197 6-39 (39)
257 KOG0280 Uncharacterized conser 98.7 5.1E-07 1.1E-11 72.0 11.4 83 116-200 157-242 (339)
258 KOG1064 RAVE (regulator of V-A 98.6 1.5E-07 3.3E-12 90.6 9.1 146 120-267 2204-2376(2439)
259 PF15492 Nbas_N: Neuroblastoma 98.6 3.6E-06 7.9E-11 67.1 15.3 143 126-270 45-272 (282)
260 KOG4547 WD40 repeat-containing 98.6 2.2E-06 4.8E-11 74.2 14.3 134 104-258 80-221 (541)
261 KOG2321 WD40 repeat protein [G 98.6 1.1E-06 2.4E-11 76.0 12.3 139 128-275 137-277 (703)
262 PF11768 DUF3312: Protein of u 98.6 1.1E-06 2.3E-11 76.6 12.2 111 122-239 257-369 (545)
263 PRK04043 tolB translocation pr 98.5 2E-05 4.3E-10 69.0 19.5 126 116-263 180-315 (419)
264 PF10282 Lactonase: Lactonase, 98.5 4.7E-05 1E-09 65.1 20.8 162 90-265 148-332 (345)
265 KOG4190 Uncharacterized conser 98.5 6.6E-07 1.4E-11 77.2 8.6 153 100-266 753-915 (1034)
266 PF11768 DUF3312: Protein of u 98.5 4.6E-06 1E-10 72.7 13.5 115 128-260 209-332 (545)
267 COG2706 3-carboxymuconate cycl 98.4 1.8E-05 4E-10 65.0 15.5 124 127-258 147-275 (346)
268 PLN02919 haloacid dehalogenase 98.4 1.4E-05 3E-10 77.4 16.7 133 126-261 741-892 (1057)
269 PRK04043 tolB translocation pr 98.4 3E-05 6.6E-10 67.8 17.4 121 118-261 226-361 (419)
270 COG4946 Uncharacterized protei 98.4 1.4E-05 2.9E-10 68.1 14.4 109 118-246 395-507 (668)
271 KOG4497 Uncharacterized conser 98.4 1.9E-06 4.1E-11 69.9 8.5 111 130-261 14-126 (447)
272 COG2706 3-carboxymuconate cycl 98.4 7.6E-05 1.6E-09 61.5 17.5 117 128-258 92-222 (346)
273 COG5170 CDC55 Serine/threonine 98.4 1E-06 2.2E-11 70.9 6.5 145 121-269 169-322 (460)
274 KOG1409 Uncharacterized conser 98.4 4.3E-05 9.2E-10 62.5 15.4 176 100-275 42-246 (404)
275 KOG2066 Vacuolar assembly/sort 98.3 9.3E-06 2E-10 73.0 12.7 115 133-270 80-200 (846)
276 KOG1354 Serine/threonine prote 98.3 1E-06 2.2E-11 71.8 6.1 158 100-260 181-362 (433)
277 TIGR02658 TTQ_MADH_Hv methylam 98.3 6.4E-05 1.4E-09 63.6 16.9 117 131-266 200-339 (352)
278 PF10282 Lactonase: Lactonase, 98.3 0.00027 6E-09 60.4 20.5 126 124-257 143-275 (345)
279 KOG1240 Protein kinase contain 98.3 1.8E-05 4E-10 74.2 13.6 157 102-260 1171-1337(1431)
280 KOG1064 RAVE (regulator of V-A 98.3 1.7E-06 3.7E-11 83.7 7.1 142 100-267 2226-2408(2439)
281 PF07433 DUF1513: Protein of u 98.3 0.00022 4.9E-09 58.5 18.1 134 130-266 56-256 (305)
282 KOG4532 WD40-like repeat conta 98.2 6.4E-05 1.4E-09 59.6 13.4 125 138-278 130-259 (344)
283 KOG0309 Conserved WD40 repeat- 98.2 1.2E-05 2.7E-10 71.7 9.4 159 101-275 43-207 (1081)
284 KOG4190 Uncharacterized conser 98.1 6.5E-06 1.4E-10 71.2 6.4 131 120-266 731-868 (1034)
285 KOG4714 Nucleoporin [Nuclear s 98.1 9.1E-06 2E-10 64.0 6.6 73 171-258 181-255 (319)
286 TIGR02658 TTQ_MADH_Hv methylam 98.1 0.00032 7E-09 59.4 16.1 108 146-267 27-146 (352)
287 PLN02919 haloacid dehalogenase 98.1 0.00029 6.4E-09 68.5 17.5 135 128-262 686-838 (1057)
288 KOG2695 WD40 repeat protein [G 98.0 6.5E-06 1.4E-10 67.2 4.9 114 140-270 228-345 (425)
289 KOG3621 WD40 repeat-containing 98.0 6.3E-05 1.4E-09 67.0 10.4 124 123-258 32-155 (726)
290 KOG1275 PAB-dependent poly(A) 98.0 0.00011 2.4E-09 67.4 11.7 123 126-255 179-340 (1118)
291 KOG0309 Conserved WD40 repeat- 98.0 1.8E-05 3.8E-10 70.8 6.5 143 100-259 87-234 (1081)
292 KOG2041 WD40 repeat protein [G 97.9 0.0001 2.2E-09 66.0 10.5 120 125-258 15-146 (1189)
293 KOG0882 Cyclophilin-related pe 97.9 1.4E-05 3E-10 67.5 4.8 143 123-266 8-240 (558)
294 KOG2314 Translation initiation 97.9 0.00015 3.2E-09 63.0 10.9 112 127-258 213-335 (698)
295 PF15492 Nbas_N: Neuroblastoma 97.8 0.0015 3.3E-08 52.4 14.7 73 130-203 3-77 (282)
296 KOG1912 WD40 repeat protein [G 97.8 0.0014 3E-08 59.5 15.8 144 94-256 24-185 (1062)
297 PF13360 PQQ_2: PQQ-like domai 97.8 0.0013 2.9E-08 52.7 14.3 119 134-269 34-152 (238)
298 COG5354 Uncharacterized protei 97.8 0.0011 2.4E-08 57.2 13.5 114 122-258 272-396 (561)
299 KOG4640 Anaphase-promoting com 97.8 0.00027 6E-09 62.3 10.2 81 121-205 17-98 (665)
300 KOG2315 Predicted translation 97.8 0.0016 3.4E-08 56.8 14.5 117 129-268 222-355 (566)
301 PF08450 SGL: SMP-30/Gluconola 97.7 0.017 3.7E-07 46.8 23.2 146 127-276 42-231 (246)
302 smart00320 WD40 WD40 repeats. 97.7 0.00011 2.3E-09 39.8 4.6 34 119-152 7-40 (40)
303 PRK02888 nitrous-oxide reducta 97.7 0.0014 3E-08 59.0 13.4 119 145-271 295-428 (635)
304 KOG2041 WD40 repeat protein [G 97.7 8.5E-05 1.9E-09 66.4 5.8 122 118-257 65-186 (1189)
305 KOG0882 Cyclophilin-related pe 97.7 0.00058 1.3E-08 58.0 10.3 145 121-266 141-314 (558)
306 KOG3617 WD40 and TPR repeat-co 97.6 0.00015 3.2E-09 66.2 6.9 110 128-258 19-132 (1416)
307 KOG1832 HIV-1 Vpr-binding prot 97.6 5.9E-05 1.3E-09 69.0 3.4 125 119-265 1096-1222(1516)
308 COG0823 TolB Periplasmic compo 97.6 0.0019 4E-08 56.6 12.6 135 106-262 220-363 (425)
309 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.014 3E-07 40.5 14.1 100 127-252 2-109 (111)
310 PF08450 SGL: SMP-30/Gluconola 97.5 0.0079 1.7E-07 48.7 14.9 119 108-243 117-241 (246)
311 KOG2314 Translation initiation 97.5 0.0024 5.2E-08 55.8 12.0 123 125-264 250-388 (698)
312 KOG1645 RING-finger-containing 97.5 0.00039 8.4E-09 58.2 6.9 81 118-202 187-269 (463)
313 KOG2066 Vacuolar assembly/sort 97.5 0.0045 9.7E-08 56.4 13.9 141 100-258 89-234 (846)
314 KOG1912 WD40 repeat protein [G 97.5 0.0017 3.6E-08 59.0 11.1 123 124-267 15-153 (1062)
315 TIGR03300 assembly_YfgL outer 97.4 0.0072 1.6E-07 52.3 14.7 111 136-270 241-351 (377)
316 PF04762 IKI3: IKI3 family; I 97.4 0.0047 1E-07 59.4 14.0 134 122-261 73-248 (928)
317 COG0823 TolB Periplasmic compo 97.4 0.0036 7.9E-08 54.8 12.3 124 117-261 185-318 (425)
318 COG5170 CDC55 Serine/threonine 97.4 0.0018 3.8E-08 52.7 9.4 135 123-258 25-202 (460)
319 smart00320 WD40 WD40 repeats. 97.3 0.00076 1.7E-08 36.2 5.0 32 166-197 9-40 (40)
320 PF13360 PQQ_2: PQQ-like domai 97.3 0.041 9E-07 44.0 16.7 108 135-263 121-236 (238)
321 KOG2114 Vacuolar assembly/sort 97.2 0.026 5.6E-07 52.1 16.0 150 105-271 93-258 (933)
322 KOG1008 Uncharacterized conser 97.2 7E-05 1.5E-09 66.1 -0.1 121 117-255 95-223 (783)
323 PF02897 Peptidase_S9_N: Proly 97.2 0.055 1.2E-06 47.5 17.5 117 127-259 126-262 (414)
324 KOG4640 Anaphase-promoting com 97.2 0.0029 6.2E-08 56.2 9.1 90 170-276 21-112 (665)
325 KOG1645 RING-finger-containing 97.2 0.002 4.4E-08 54.1 7.7 92 148-259 175-268 (463)
326 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0024 5.2E-08 37.1 5.6 32 123-154 10-41 (47)
327 COG5354 Uncharacterized protei 97.1 0.0035 7.6E-08 54.2 8.8 120 117-256 25-159 (561)
328 KOG2079 Vacuolar assembly/sort 97.1 0.0033 7.1E-08 59.1 8.7 70 135-206 98-167 (1206)
329 TIGR03300 assembly_YfgL outer 97.0 0.036 7.8E-07 48.0 14.7 109 135-267 64-173 (377)
330 KOG2114 Vacuolar assembly/sort 96.9 0.031 6.6E-07 51.7 13.6 145 120-278 60-223 (933)
331 PF12234 Rav1p_C: RAVE protein 96.9 0.056 1.2E-06 49.4 15.2 124 126-257 31-156 (631)
332 PF07433 DUF1513: Protein of u 96.9 0.1 2.3E-06 43.2 15.5 60 170-248 217-277 (305)
333 PF04762 IKI3: IKI3 family; I 96.8 0.078 1.7E-06 51.3 15.9 130 122-257 302-456 (928)
334 COG3490 Uncharacterized protei 96.8 0.039 8.4E-07 44.8 11.5 132 131-264 120-317 (366)
335 PRK02888 nitrous-oxide reducta 96.8 0.039 8.6E-07 50.0 12.8 120 132-260 200-354 (635)
336 KOG4649 PQQ (pyrrolo-quinoline 96.8 0.083 1.8E-06 42.4 13.0 110 136-266 23-132 (354)
337 KOG1920 IkappaB kinase complex 96.7 0.056 1.2E-06 51.9 13.9 130 123-257 67-230 (1265)
338 PF12894 Apc4_WD40: Anaphase-p 96.7 0.0092 2E-07 34.6 5.7 35 167-202 9-43 (47)
339 PF06977 SdiA-regulated: SdiA- 96.7 0.13 2.9E-06 41.6 14.1 130 119-257 16-147 (248)
340 PF04841 Vps16_N: Vps16, N-ter 96.6 0.41 9E-06 42.0 18.2 51 228-278 217-268 (410)
341 PF08596 Lgl_C: Lethal giant l 96.6 0.1 2.2E-06 45.4 14.0 123 126-257 3-173 (395)
342 PF00930 DPPIV_N: Dipeptidyl p 96.6 0.0097 2.1E-07 51.1 7.7 108 133-248 1-121 (353)
343 PRK13616 lipoprotein LpqB; Pro 96.6 0.11 2.3E-06 47.7 14.5 113 126-257 398-527 (591)
344 KOG2079 Vacuolar assembly/sort 96.4 0.016 3.5E-07 54.7 8.5 70 123-192 129-198 (1206)
345 PRK11138 outer membrane biogen 96.4 0.19 4E-06 43.9 14.6 108 136-267 256-363 (394)
346 PRK13616 lipoprotein LpqB; Pro 96.3 0.06 1.3E-06 49.3 11.5 115 124-253 349-472 (591)
347 PF15390 DUF4613: Domain of un 96.3 0.42 9.1E-06 42.9 15.9 123 120-257 52-186 (671)
348 PF08553 VID27: VID27 cytoplas 96.3 0.18 4E-06 47.4 14.5 101 138-256 544-646 (794)
349 KOG1920 IkappaB kinase complex 96.2 0.088 1.9E-06 50.6 11.9 115 127-258 198-323 (1265)
350 COG3391 Uncharacterized conser 96.2 0.6 1.3E-05 40.6 16.4 123 126-264 117-246 (381)
351 KOG1008 Uncharacterized conser 96.2 0.0034 7.4E-08 55.9 2.5 140 102-257 127-275 (783)
352 KOG2444 WD40 repeat protein [G 96.0 0.032 6.9E-07 43.7 6.8 106 136-258 70-178 (238)
353 KOG1275 PAB-dependent poly(A) 95.9 0.036 7.8E-07 51.6 7.8 108 135-265 146-262 (1118)
354 PF14783 BBS2_Mid: Ciliary BBS 95.8 0.39 8.5E-06 33.4 11.3 65 172-256 2-70 (111)
355 PF04053 Coatomer_WDAD: Coatom 95.7 0.39 8.5E-06 42.5 13.4 121 123-277 31-152 (443)
356 KOG3621 WD40 repeat-containing 95.7 0.04 8.6E-07 49.8 7.1 79 122-200 74-155 (726)
357 COG3391 Uncharacterized conser 95.6 0.83 1.8E-05 39.7 14.9 115 127-262 76-195 (381)
358 PF10647 Gmad1: Lipoprotein Lp 95.6 0.59 1.3E-05 38.1 13.2 112 126-256 25-143 (253)
359 KOG3617 WD40 and TPR repeat-co 95.6 0.032 6.9E-07 51.7 6.1 72 125-199 60-131 (1416)
360 COG3386 Gluconolactonase [Carb 95.4 1 2.2E-05 37.8 14.3 136 125-275 111-260 (307)
361 PF10313 DUF2415: Uncharacteri 95.4 0.1 2.2E-06 29.4 5.6 30 229-258 2-34 (43)
362 COG3386 Gluconolactonase [Carb 95.4 0.4 8.7E-06 40.2 11.8 99 108-207 145-250 (307)
363 KOG1832 HIV-1 Vpr-binding prot 95.4 0.023 5.1E-07 52.8 4.6 87 165-267 1097-1186(1516)
364 PF03178 CPSF_A: CPSF A subuni 95.3 0.42 9.1E-06 40.4 12.0 115 121-257 85-202 (321)
365 PRK10115 protease 2; Provision 95.2 2.7 5.9E-05 39.6 17.7 72 125-201 127-209 (686)
366 COG3204 Uncharacterized protei 95.2 1 2.2E-05 37.1 12.8 130 120-257 81-210 (316)
367 PF10313 DUF2415: Uncharacteri 95.2 0.1 2.2E-06 29.5 5.1 32 170-201 1-35 (43)
368 PRK11138 outer membrane biogen 95.2 0.71 1.5E-05 40.3 13.2 100 135-256 293-393 (394)
369 PF14870 PSII_BNR: Photosynthe 95.2 1.4 3.1E-05 36.8 14.2 113 120-248 140-253 (302)
370 PF06977 SdiA-regulated: SdiA- 95.0 1.1 2.3E-05 36.5 12.7 134 124-266 64-209 (248)
371 KOG4499 Ca2+-binding protein R 94.9 1.2 2.7E-05 35.4 12.2 142 124-277 108-261 (310)
372 PF07995 GSDH: Glucose / Sorbo 94.9 0.54 1.2E-05 40.0 11.5 53 126-180 3-59 (331)
373 PF06433 Me-amine-dh_H: Methyl 94.9 1.7 3.6E-05 36.8 13.8 79 129-207 40-134 (342)
374 PF10168 Nup88: Nuclear pore c 94.9 2.4 5.2E-05 40.0 16.2 91 170-266 85-189 (717)
375 KOG4460 Nuclear pore complex, 94.7 1.1 2.3E-05 39.9 12.4 87 171-262 105-203 (741)
376 cd00216 PQQ_DH Dehydrogenases 94.7 1.3 2.7E-05 40.0 13.6 114 138-267 303-434 (488)
377 PF08553 VID27: VID27 cytoplas 94.6 0.69 1.5E-05 43.7 11.9 125 135-275 492-624 (794)
378 PF10647 Gmad1: Lipoprotein Lp 94.6 2.1 4.5E-05 34.9 14.1 112 126-247 67-185 (253)
379 PF05935 Arylsulfotrans: Aryls 94.5 3 6.5E-05 37.5 15.4 137 130-270 153-314 (477)
380 PF04053 Coatomer_WDAD: Coatom 94.4 0.51 1.1E-05 41.8 10.3 105 125-257 69-173 (443)
381 PF14655 RAB3GAP2_N: Rab3 GTPa 94.3 0.86 1.9E-05 39.8 11.2 83 120-205 303-404 (415)
382 PF05096 Glu_cyclase_2: Glutam 94.3 2.5 5.4E-05 34.5 14.2 120 125-267 45-167 (264)
383 PF08596 Lgl_C: Lethal giant l 94.2 3.6 7.8E-05 36.0 16.6 78 120-199 82-173 (395)
384 PF00930 DPPIV_N: Dipeptidyl p 94.1 0.24 5.3E-06 42.5 7.5 67 178-262 1-76 (353)
385 KOG4499 Ca2+-binding protein R 94.0 2.5 5.5E-05 33.7 13.7 135 86-236 109-262 (310)
386 PF07569 Hira: TUP1-like enhan 93.9 0.95 2.1E-05 36.0 10.0 83 177-263 18-101 (219)
387 KOG1916 Nuclear protein, conta 93.9 0.049 1.1E-06 50.8 3.0 133 118-269 126-282 (1283)
388 PF07250 Glyoxal_oxid_N: Glyox 93.9 2.4 5.1E-05 34.3 12.2 126 130-268 72-208 (243)
389 TIGR02604 Piru_Ver_Nterm putat 93.7 4.2 9.1E-05 35.1 15.1 110 125-246 14-142 (367)
390 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.7 5.5 0.00012 36.3 17.3 32 238-269 471-502 (527)
391 PF07569 Hira: TUP1-like enhan 93.5 0.96 2.1E-05 36.0 9.3 74 132-206 18-102 (219)
392 PF04841 Vps16_N: Vps16, N-ter 93.3 5.3 0.00012 35.1 15.3 110 124-268 216-325 (410)
393 KOG4649 PQQ (pyrrolo-quinoline 93.1 3.8 8.2E-05 33.3 11.9 69 135-206 62-130 (354)
394 PF03178 CPSF_A: CPSF A subuni 93.0 3.2 7E-05 35.0 12.6 97 100-199 103-202 (321)
395 KOG2395 Protein involved in va 93.0 0.67 1.4E-05 41.1 8.2 126 135-275 344-477 (644)
396 PF14655 RAB3GAP2_N: Rab3 GTPa 92.9 3 6.6E-05 36.5 12.2 101 166-267 304-408 (415)
397 KOG2395 Protein involved in va 92.9 3.5 7.5E-05 36.8 12.3 112 127-257 378-500 (644)
398 PF06433 Me-amine-dh_H: Methyl 92.7 5.6 0.00012 33.7 18.5 172 98-269 101-332 (342)
399 TIGR03606 non_repeat_PQQ dehyd 92.6 7.2 0.00016 34.7 15.6 62 120-181 25-90 (454)
400 PF10168 Nup88: Nuclear pore c 92.5 1.6 3.4E-05 41.2 10.6 78 124-202 84-182 (717)
401 TIGR02604 Piru_Ver_Nterm putat 92.4 4.5 9.9E-05 34.9 12.8 66 120-188 67-142 (367)
402 KOG2444 WD40 repeat protein [G 92.4 0.32 6.9E-06 38.3 5.0 98 100-200 76-178 (238)
403 COG3490 Uncharacterized protei 92.3 5.7 0.00012 32.8 12.5 105 126-246 69-180 (366)
404 PF11715 Nup160: Nucleoporin N 92.2 0.83 1.8E-05 41.8 8.4 89 179-267 156-258 (547)
405 PF11715 Nup160: Nucleoporin N 91.9 1.2 2.5E-05 40.8 9.0 73 134-207 156-256 (547)
406 PF05694 SBP56: 56kDa selenium 91.7 8.7 0.00019 33.8 13.8 133 125-258 181-343 (461)
407 PF14583 Pectate_lyase22: Olig 91.2 4 8.8E-05 35.2 10.8 76 131-210 42-121 (386)
408 COG3204 Uncharacterized protei 90.9 4.4 9.6E-05 33.5 10.2 79 167-260 83-161 (316)
409 PF00780 CNH: CNH domain; Int 90.6 8.4 0.00018 31.5 14.3 64 134-203 5-68 (275)
410 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.2 9.2 0.0002 34.9 12.9 115 136-266 69-198 (527)
411 PF12657 TFIIIC_delta: Transcr 90.0 2.2 4.8E-05 32.5 7.6 30 171-200 87-122 (173)
412 cd00216 PQQ_DH Dehydrogenases 89.9 15 0.00032 33.2 17.6 116 144-266 173-328 (488)
413 PF10214 Rrn6: RNA polymerase 89.8 11 0.00023 36.2 13.5 116 124-258 145-277 (765)
414 PF00780 CNH: CNH domain; Int 89.5 10 0.00022 31.0 18.0 123 136-269 105-267 (275)
415 PF08728 CRT10: CRT10; InterP 89.5 7.8 0.00017 36.4 11.8 118 125-256 101-245 (717)
416 PF05694 SBP56: 56kDa selenium 89.4 14 0.00031 32.5 13.7 120 135-267 86-240 (461)
417 PF14583 Pectate_lyase22: Olig 89.0 3.5 7.6E-05 35.5 8.7 106 151-272 15-125 (386)
418 TIGR02276 beta_rpt_yvtn 40-res 88.3 2.8 6.1E-05 22.9 6.3 35 237-271 1-36 (42)
419 PF08801 Nucleoporin_N: Nup133 88.0 18 0.00039 31.9 13.2 31 229-259 191-221 (422)
420 PHA02713 hypothetical protein; 87.9 3.2 6.9E-05 38.1 8.4 75 180-270 463-546 (557)
421 PF03088 Str_synth: Strictosid 87.7 4.1 8.8E-05 27.3 6.6 40 144-187 35-74 (89)
422 PF13449 Phytase-like: Esteras 87.5 17 0.00036 30.9 15.4 119 124-246 19-165 (326)
423 TIGR03074 PQQ_membr_DH membran 87.3 29 0.00062 33.4 15.4 128 135-266 193-353 (764)
424 PF13449 Phytase-like: Esteras 87.1 18 0.00038 30.7 12.0 62 126-188 86-165 (326)
425 PF03088 Str_synth: Strictosid 86.8 7.3 0.00016 26.1 7.6 41 188-245 34-74 (89)
426 KOG4460 Nuclear pore complex, 86.5 8 0.00017 34.7 9.4 81 124-204 103-203 (741)
427 PF10214 Rrn6: RNA polymerase 86.5 32 0.00069 33.1 15.7 134 122-261 77-236 (765)
428 PF14781 BBS2_N: Ciliary BBSom 86.3 11 0.00023 27.4 12.9 118 129-265 3-133 (136)
429 KOG1900 Nuclear pore complex, 86.2 7.1 0.00015 38.7 9.8 151 100-258 95-273 (1311)
430 PF07676 PD40: WD40-like Beta 86.0 3.3 7.1E-05 22.4 4.8 29 123-151 7-38 (39)
431 KOG1916 Nuclear protein, conta 86.0 1.1 2.3E-05 42.5 4.1 69 127-199 186-265 (1283)
432 KOG2377 Uncharacterized conser 85.9 15 0.00032 32.5 10.6 35 167-201 64-98 (657)
433 TIGR02276 beta_rpt_yvtn 40-res 85.7 4.2 9.1E-05 22.2 5.7 27 179-205 1-28 (42)
434 KOG3630 Nuclear pore complex, 84.9 6.8 0.00015 38.4 8.8 125 125-266 101-236 (1405)
435 PF05096 Glu_cyclase_2: Glutam 84.7 20 0.00044 29.3 13.9 108 141-266 105-212 (264)
436 PRK10115 protease 2; Provision 83.7 18 0.0004 34.2 11.3 71 171-259 128-209 (686)
437 PRK13684 Ycf48-like protein; P 83.6 27 0.00058 29.8 13.3 111 124-252 172-283 (334)
438 KOG3630 Nuclear pore complex, 83.6 3 6.5E-05 40.7 6.0 104 125-244 156-260 (1405)
439 PF12234 Rav1p_C: RAVE protein 83.5 26 0.00056 32.7 11.7 70 172-256 32-103 (631)
440 PHA02713 hypothetical protein; 82.2 26 0.00057 32.3 11.5 68 135-205 351-446 (557)
441 KOG2377 Uncharacterized conser 81.1 19 0.0004 31.9 9.3 73 123-197 65-138 (657)
442 PF08728 CRT10: CRT10; InterP 80.2 11 0.00025 35.4 8.3 77 120-198 159-245 (717)
443 PHA03098 kelch-like protein; P 79.9 32 0.00068 31.4 11.3 108 135-261 389-515 (534)
444 PF14870 PSII_BNR: Photosynthe 79.8 35 0.00076 28.7 15.4 114 123-254 185-301 (302)
445 PF15390 DUF4613: Domain of un 79.2 20 0.00044 32.7 9.2 69 128-199 116-186 (671)
446 PF12768 Rax2: Cortical protei 79.2 36 0.00077 28.3 12.9 56 146-204 16-77 (281)
447 TIGR03032 conserved hypothetic 78.9 38 0.00083 28.6 11.7 91 150-266 189-299 (335)
448 TIGR03032 conserved hypothetic 78.3 40 0.00086 28.5 10.1 85 135-239 212-316 (335)
449 KOG4441 Proteins containing BT 78.3 57 0.0012 30.2 12.4 108 135-261 380-503 (571)
450 smart00564 PQQ beta-propeller 78.2 7.3 0.00016 19.9 4.1 24 241-264 8-31 (33)
451 PHA03098 kelch-like protein; P 76.8 49 0.0011 30.1 11.6 109 134-261 293-418 (534)
452 PRK13684 Ycf48-like protein; P 76.1 48 0.001 28.2 13.1 114 124-255 214-329 (334)
453 KOG2280 Vacuolar assembly/sort 75.9 69 0.0015 30.4 11.7 39 228-266 217-255 (829)
454 PHA02790 Kelch-like protein; P 74.8 62 0.0013 29.2 11.5 105 135-261 362-474 (480)
455 COG4257 Vgb Streptogramin lyas 74.8 47 0.001 27.5 13.5 142 91-259 67-220 (353)
456 KOG4441 Proteins containing BT 74.8 71 0.0015 29.6 11.9 108 135-261 427-550 (571)
457 PF14761 HPS3_N: Hermansky-Pud 74.1 16 0.00034 28.9 6.4 49 182-245 29-77 (215)
458 COG4257 Vgb Streptogramin lyas 72.8 54 0.0012 27.2 10.7 118 125-259 62-188 (353)
459 PF07995 GSDH: Glucose / Sorbo 72.7 18 0.00039 30.8 7.2 74 121-194 249-330 (331)
460 COG5167 VID27 Protein involved 72.3 29 0.00063 31.3 8.2 62 135-200 572-633 (776)
461 PF01436 NHL: NHL repeat; Int 71.1 11 0.00025 18.7 4.4 26 229-254 3-28 (28)
462 PF12657 TFIIIC_delta: Transcr 71.0 25 0.00053 26.7 7.0 31 228-258 86-122 (173)
463 KOG2247 WD40 repeat-containing 70.9 0.57 1.2E-05 41.2 -2.2 130 127-277 37-167 (615)
464 PLN02193 nitrile-specifier pro 70.4 82 0.0018 28.3 14.3 113 135-262 278-415 (470)
465 COG1520 FOG: WD40-like repeat 70.3 70 0.0015 27.5 12.7 71 135-208 68-138 (370)
466 TIGR03074 PQQ_membr_DH membran 68.9 1.2E+02 0.0025 29.4 15.5 26 241-266 461-486 (764)
467 PF14761 HPS3_N: Hermansky-Pud 68.6 21 0.00045 28.2 6.1 50 137-188 29-78 (215)
468 PF01011 PQQ: PQQ enzyme repea 68.5 17 0.00036 19.6 5.2 26 242-267 3-28 (38)
469 PRK13615 lipoprotein LpqB; Pro 68.0 1E+02 0.0022 28.5 11.5 106 128-254 337-446 (557)
470 PLN02153 epithiospecifier prot 67.6 77 0.0017 26.9 14.2 70 135-206 137-232 (341)
471 COG5276 Uncharacterized conser 67.4 74 0.0016 26.7 12.7 105 136-258 96-200 (370)
472 COG5167 VID27 Protein involved 67.1 76 0.0017 28.8 9.7 107 129-257 513-632 (776)
473 KOG1900 Nuclear pore complex, 66.5 41 0.00088 33.8 8.6 98 143-251 96-201 (1311)
474 PF01731 Arylesterase: Arylest 66.2 32 0.0007 22.8 5.8 30 229-258 55-85 (86)
475 KOG1897 Damage-specific DNA bi 66.1 1.4E+02 0.003 29.4 13.6 101 135-256 839-941 (1096)
476 TIGR02171 Fb_sc_TIGR02171 Fibr 65.4 49 0.0011 32.1 8.8 88 92-183 316-412 (912)
477 KOG3522 Predicted guanine nucl 64.9 80 0.0017 30.4 9.8 81 118-202 620-700 (925)
478 PF07250 Glyoxal_oxid_N: Glyox 64.3 40 0.00086 27.3 7.1 92 148-256 48-147 (243)
479 TIGR02171 Fb_sc_TIGR02171 Fibr 63.8 33 0.00072 33.2 7.4 60 191-267 329-396 (912)
480 PF02897 Peptidase_S9_N: Proly 62.0 1.1E+02 0.0024 26.8 18.7 72 129-201 174-262 (414)
481 KOG1897 Damage-specific DNA bi 61.6 1.7E+02 0.0037 28.9 14.1 120 125-260 488-618 (1096)
482 PF12768 Rax2: Cortical protei 60.3 99 0.0022 25.7 10.4 78 121-198 33-122 (281)
483 PF14269 Arylsulfotran_2: Aryl 59.5 1.1E+02 0.0023 25.8 16.0 42 227-268 143-184 (299)
484 PF01731 Arylesterase: Arylest 59.4 49 0.0011 21.9 6.5 29 171-199 55-84 (86)
485 PLN00033 photosystem II stabil 58.9 1.3E+02 0.0028 26.5 13.6 111 124-254 280-396 (398)
486 PF14339 DUF4394: Domain of un 58.9 95 0.0021 25.0 12.1 80 168-260 25-106 (236)
487 PF13570 PQQ_3: PQQ-like domai 58.2 22 0.00048 19.2 3.4 21 238-258 20-40 (40)
488 TIGR03548 mutarot_permut cycli 57.8 1.1E+02 0.0025 25.6 12.4 69 135-205 123-200 (323)
489 PF14269 Arylsulfotran_2: Aryl 57.1 1.2E+02 0.0025 25.5 15.1 137 125-265 144-296 (299)
490 PF10395 Utp8: Utp8 family; I 55.4 1.9E+02 0.0041 27.4 13.7 32 123-154 128-159 (670)
491 PHA02790 Kelch-like protein; P 55.3 1.6E+02 0.0035 26.6 10.9 108 135-261 271-388 (480)
492 PLN00033 photosystem II stabil 55.3 1.5E+02 0.0032 26.1 14.2 112 127-254 241-353 (398)
493 KOG1983 Tomosyn and related SN 54.9 1.6E+02 0.0034 29.6 10.6 31 124-154 35-65 (993)
494 TIGR03118 PEPCTERM_chp_1 conse 54.2 1.3E+02 0.0029 25.3 14.2 73 126-198 24-117 (336)
495 TIGR03548 mutarot_permut cycli 53.5 1.4E+02 0.0029 25.2 12.2 110 135-261 72-198 (323)
496 KOG2280 Vacuolar assembly/sort 52.9 1.3E+02 0.0027 28.8 8.9 53 146-203 64-116 (829)
497 PF08954 DUF1900: Domain of un 52.5 57 0.0012 23.8 5.6 56 124-180 10-67 (136)
498 KOG3616 Selective LIM binding 50.5 27 0.00058 33.1 4.4 33 170-202 15-47 (1636)
499 PF12341 DUF3639: Protein of u 50.2 33 0.00072 17.2 3.7 26 125-152 2-27 (27)
500 KOG1520 Predicted alkaloid syn 49.3 1.4E+02 0.003 25.9 8.2 113 125-254 115-247 (376)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.8e-29 Score=203.07 Aligned_cols=192 Identities=21% Similarity=0.254 Sum_probs=159.2
Q ss_pred hhccccC-----ccCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 023642 85 MLAGREG-----NYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG 156 (279)
Q Consensus 85 ~~~~~~~-----~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~ 156 (279)
.+.||.. .|+|+|.. ++.|.++.+|++....+..+.++|...|.|++|+|||+.||+|+.||+|++||..+|
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg 189 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG 189 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCC
Confidence 3556654 47887664 577899999999998888999999999999999999999999999999999999999
Q ss_pred eEEeeeeeccCCCcceEEEEECC-----CCCEEEEEeCCCeEEEEECCCCceeeeec-ccc-------ccceeEEeeCCC
Q 023642 157 WKIQKDILAKSLRWTVTDTSLSP-----DQRHLVYASMSPIVHIVDVGSGTMESLAN-VTE-------IHDGLDFSAADD 223 (279)
Q Consensus 157 ~~~~~~~~~~~~~~~v~~~~~sp-----~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~-------~~~~~~~~~~~~ 223 (279)
+++.. .+.+|...|++++|.| ..++|++++.||.++|||+..+.+..... ... .-.++.+++..+
T Consensus 190 ~~~g~--~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~D 267 (480)
T KOG0271|consen 190 QQIGR--ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQD 267 (480)
T ss_pred Ccccc--cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCC
Confidence 87655 4689999999999976 56899999999999999998877643222 111 111222222222
Q ss_pred --------------------------------------------------------------------------------
Q 023642 224 -------------------------------------------------------------------------------- 223 (279)
Q Consensus 224 -------------------------------------------------------------------------------- 223 (279)
T Consensus 268 rtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~t 347 (480)
T KOG0271|consen 268 RTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFT 347 (480)
T ss_pred ceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCce
Confidence
Q ss_pred ----------------CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEee
Q 023642 224 ----------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 224 ----------------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~~ 278 (279)
.||..-|+.+.||||++++|++|-|..|++||.++|+.+.+|+||-+.|+.+.++
T Consensus 348 lflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaws 418 (480)
T KOG0271|consen 348 LFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWS 418 (480)
T ss_pred EEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEec
Confidence 5688999999999999999999999999999999999999999999999998764
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=5.7e-29 Score=202.35 Aligned_cols=166 Identities=18% Similarity=0.172 Sum_probs=145.2
Q ss_pred ccCCCCeee---ccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCC
Q 023642 92 NYSGRGRFS---AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL 168 (279)
Q Consensus 92 ~~~~~~~~~---~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 168 (279)
.|.|.|+|. +-|.+-.+|++.+.......+||...|++++|+|||.++++|+.|..-+|||+++|.++-. +.+|
T Consensus 268 afHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~---L~gH 344 (459)
T KOG0272|consen 268 AFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF---LAGH 344 (459)
T ss_pred eecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEE---eccc
Confidence 578889984 4466666666666666666899999999999999999999999999999999999987653 5789
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEec-CCCEEEEecC
Q 023642 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSS 247 (279)
Q Consensus 169 ~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~t~s~ 247 (279)
..+|.+++|+|+|..||+|+.|++++|||++......... +|..-|+.|+|+| .|.+|+|++.
T Consensus 345 ~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip----------------AH~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 345 IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP----------------AHSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred ccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc----------------cccchhhheEecccCCeEEEEccc
Confidence 9999999999999999999999999999999877644332 2777999999999 6899999999
Q ss_pred CCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 248 DDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 248 d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
|++++||.-++.++++++.||.+.|-++-
T Consensus 409 D~t~kiWs~~~~~~~ksLaGHe~kV~s~D 437 (459)
T KOG0272|consen 409 DNTVKIWSTRTWSPLKSLAGHEGKVISLD 437 (459)
T ss_pred CcceeeecCCCcccchhhcCCccceEEEE
Confidence 99999999999999999999999998763
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.4e-28 Score=200.07 Aligned_cols=159 Identities=20% Similarity=0.219 Sum_probs=144.7
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.+.|+++.+|.+........+++|...|..++|+|+|++|++++.|.+-++||+.++..+.. ..+|...|.+++|+|
T Consensus 237 ~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~---QEGHs~~v~~iaf~~ 313 (459)
T KOG0272|consen 237 ASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL---QEGHSKGVFSIAFQP 313 (459)
T ss_pred eccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHh---hcccccccceeEecC
Confidence 57799999999988777788999999999999999999999999999999999999865442 579999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
||.++++|+.|..-+|||+++|.++.... +|...|.+|+|+|+|..|+|||.|++++|||++..
T Consensus 314 DGSL~~tGGlD~~~RvWDlRtgr~im~L~----------------gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r 377 (459)
T KOG0272|consen 314 DGSLAATGGLDSLGRVWDLRTGRCIMFLA----------------GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR 377 (459)
T ss_pred CCceeeccCccchhheeecccCcEEEEec----------------ccccceeeEeECCCceEEeecCCCCcEEEeeeccc
Confidence 99999999999999999999999865432 37779999999999999999999999999999999
Q ss_pred eEEEEEeCCCcceeEEEe
Q 023642 260 KLSLRILAHTVNIALWIT 277 (279)
Q Consensus 260 ~~~~~~~~h~~~v~~v~~ 277 (279)
+++.++++|..-|+.|-.
T Consensus 378 ~~ly~ipAH~nlVS~Vk~ 395 (459)
T KOG0272|consen 378 SELYTIPAHSNLVSQVKY 395 (459)
T ss_pred ccceecccccchhhheEe
Confidence 999999999998887754
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.95 E-value=1.3e-26 Score=180.77 Aligned_cols=187 Identities=16% Similarity=0.214 Sum_probs=159.6
Q ss_pred CCCCcccchhhhhccccCcc-----CCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCC
Q 023642 74 GKRHLPVSTVKMLAGREGNY-----SGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA 145 (279)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d 145 (279)
......+...++|++|...+ +++.+. ++.|+.+++|+.++..+.+.++-...+|+.++|+|.|+++|.|+-|
T Consensus 39 ~~~~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLd 118 (343)
T KOG0286|consen 39 SVGRIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLD 118 (343)
T ss_pred cceeeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcC
Confidence 34444566778899988764 444443 6789999999999999999999999999999999999999999999
Q ss_pred CcEEEEEcCCC--e-EEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCC
Q 023642 146 SQIRIYDVERG--W-KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (279)
Q Consensus 146 ~~i~iwd~~~~--~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (279)
+...||++.+. + .......+.+|.+.+.++.|-+ ..+|++++.|.++.+||+++++.... |.
T Consensus 119 N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~-----------f~--- 183 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQV-----------FH--- 183 (343)
T ss_pred ceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEE-----------ec---
Confidence 99999999854 1 2223334689999999999987 56888999999999999999987543 22
Q ss_pred CCCccccEEEEEEec-CCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 223 DGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 223 ~~~~~~~v~~~~~sp-~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
||.+.|.+++++| +++.+++|+-|+..++||++.+.++++|+||..+||+|..
T Consensus 184 --GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~f 237 (343)
T KOG0286|consen 184 --GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRF 237 (343)
T ss_pred --CCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEE
Confidence 3778999999999 8999999999999999999999999999999999999853
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.3e-27 Score=190.18 Aligned_cols=142 Identities=20% Similarity=0.243 Sum_probs=127.3
Q ss_pred ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 023642 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d 197 (279)
..+.||.++|.|++|+|+|+.|++|+.|.++|+||+.+..+... +.+|...|.+++|+|||+.||+|+.||+|++||
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t---~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFT---CKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCccee---ecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 34789999999999999999999999999999999998866554 689999999999999999999999999999999
Q ss_pred CCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEec-----CCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcce
Q 023642 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNI 272 (279)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-----~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v 272 (279)
.++|+...-. + .+|+.+|++++|.| .+++|++++.|++|+|||+..+.++..+.||+.+|
T Consensus 186 pktg~~~g~~----------l-----~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~V 250 (480)
T KOG0271|consen 186 PKTGQQIGRA----------L-----RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASV 250 (480)
T ss_pred CCCCCccccc----------c-----cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccce
Confidence 9998873211 1 24778999999976 67899999999999999999999999999999999
Q ss_pred eEEEe
Q 023642 273 ALWIT 277 (279)
Q Consensus 273 ~~v~~ 277 (279)
+||-+
T Consensus 251 TCvrw 255 (480)
T KOG0271|consen 251 TCVRW 255 (480)
T ss_pred EEEEE
Confidence 99864
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.95 E-value=4.4e-26 Score=176.78 Aligned_cols=176 Identities=20% Similarity=0.172 Sum_probs=147.5
Q ss_pred hhhhccccC-----ccCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 023642 83 VKMLAGREG-----NYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVE 154 (279)
Q Consensus 83 ~~~~~~~~~-----~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~ 154 (279)
.+.+.||+. ..+++|.| .+-|+.+++|++........+.+|...|.+++|+||.+++++|+.|++|++|+..
T Consensus 56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~ 135 (315)
T KOG0279|consen 56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL 135 (315)
T ss_pred eeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec
Confidence 344566554 35667776 5679999999999988888899999999999999999999999999999999998
Q ss_pred CCeEEeeeeeccCCCcceEEEEECCC--CCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEE
Q 023642 155 RGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFS 232 (279)
Q Consensus 155 ~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 232 (279)
..... +.. ...++..|.++.|+|+ ..+|++++.|+++++||+++.+..... . ||++.++.
T Consensus 136 g~ck~-t~~-~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~-----------~-----gh~~~v~t 197 (315)
T KOG0279|consen 136 GVCKY-TIH-EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF-----------I-----GHSGYVNT 197 (315)
T ss_pred ccEEE-EEe-cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc-----------c-----cccccEEE
Confidence 76433 321 2233778999999997 688999999999999999998764321 1 37779999
Q ss_pred EEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 233 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 233 ~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
+++||||...++|+.|+.+.+||++.++.+..+. |...|++++.
T Consensus 198 ~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~f 241 (315)
T KOG0279|consen 198 VTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCF 241 (315)
T ss_pred EEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEe
Confidence 9999999999999999999999999999988886 7888888875
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=6.8e-27 Score=203.23 Aligned_cols=175 Identities=21% Similarity=0.252 Sum_probs=156.1
Q ss_pred hhccccC-----ccCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 023642 85 MLAGREG-----NYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG 156 (279)
Q Consensus 85 ~~~~~~~-----~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~ 156 (279)
.+.||.+ .|+|+.+| .+.|.++.+|.+......-...||..+|..+.|+|-|-+||||+.|++.++|..+..
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~ 525 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN 525 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence 3566665 46777776 577899999999888877788999999999999999999999999999999999987
Q ss_pred eEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEe
Q 023642 157 WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS 236 (279)
Q Consensus 157 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 236 (279)
.+++. +.+|-+.|.+++|+|+..|+++||.|.+|++||+.+|....+. . ||.++|.+++||
T Consensus 526 ~PlRi---faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF-----------~-----GH~~~V~al~~S 586 (707)
T KOG0263|consen 526 KPLRI---FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF-----------T-----GHKGPVTALAFS 586 (707)
T ss_pred Cchhh---hcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe-----------c-----CCCCceEEEEEc
Confidence 66654 5799999999999999999999999999999999999986543 2 377899999999
Q ss_pred cCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEee
Q 023642 237 TDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 237 p~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~~ 278 (279)
|+|++|++|+.|+.|.+||+.+++.+..+.+|++.|.++-.+
T Consensus 587 p~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS 628 (707)
T KOG0263|consen 587 PCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFS 628 (707)
T ss_pred CCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEe
Confidence 999999999999999999999999999999999999998765
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.94 E-value=1.2e-25 Score=174.35 Aligned_cols=161 Identities=14% Similarity=0.157 Sum_probs=139.7
Q ss_pred eccccceEeeeeecCCC-----CceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEE
Q 023642 100 SAADCCHMLSRYLPVNG-----PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD 174 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~-----~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 174 (279)
++.|..+++|.+...+. ...++||...|..++.++||++.++++.|+.+++||+.++++.+. +.+|...|.+
T Consensus 34 asrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~---f~GH~~dVls 110 (315)
T KOG0279|consen 34 ASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRR---FVGHTKDVLS 110 (315)
T ss_pred cccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEE---EEecCCceEE
Confidence 46788999999876443 345899999999999999999999999999999999999976554 6799999999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC--CCEEEEecCCCeEE
Q 023642 175 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIY 252 (279)
Q Consensus 175 ~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~t~s~d~~i~ 252 (279)
++|+||.++|++|+.|++|++|++.+......... .++.+|.|+.|+|+ ..++++++.|++|+
T Consensus 111 va~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~---------------~~~~WVscvrfsP~~~~p~Ivs~s~DktvK 175 (315)
T KOG0279|consen 111 VAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHED---------------SHREWVSCVRFSPNESNPIIVSASWDKTVK 175 (315)
T ss_pred EEecCCCceeecCCCcceeeeeeecccEEEEEecC---------------CCcCcEEEEEEcCCCCCcEEEEccCCceEE
Confidence 99999999999999999999999987654332211 13569999999998 78999999999999
Q ss_pred EEECCCCeEEEEEeCCCcceeEEEee
Q 023642 253 VYDLEANKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 253 vwd~~~~~~~~~~~~h~~~v~~v~~~ 278 (279)
+||+++.+....+.||++.++.+..+
T Consensus 176 vWnl~~~~l~~~~~gh~~~v~t~~vS 201 (315)
T KOG0279|consen 176 VWNLRNCQLRTTFIGHSGYVNTVTVS 201 (315)
T ss_pred EEccCCcchhhccccccccEEEEEEC
Confidence 99999999999999999999988654
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.93 E-value=1e-24 Score=170.32 Aligned_cols=179 Identities=19% Similarity=0.209 Sum_probs=155.8
Q ss_pred hhhhhccccCc-----cCCCCee--eccccceEeeeeecCCCCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEc
Q 023642 82 TVKMLAGREGN-----YSGRGRF--SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDV 153 (279)
Q Consensus 82 ~~~~~~~~~~~-----~~~~~~~--~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~ 153 (279)
..+.+.+|+.- |..++.+ ++.|.+..+|++........+.+|.+.|.+++++| +++.|++|+-|+..++||+
T Consensus 137 v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~ 216 (343)
T KOG0286|consen 137 VSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDV 216 (343)
T ss_pred eeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeec
Confidence 34566777653 3445554 67888999999999988888999999999999999 9999999999999999999
Q ss_pred CCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEE
Q 023642 154 ERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSL 233 (279)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 233 (279)
+.+.+++. +.+|+..|.++.|.|+|.-+++|+.|+++++||++..+......... -...|+++
T Consensus 217 R~~~c~qt---F~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~--------------~~~gitSv 279 (343)
T KOG0286|consen 217 RSGQCVQT---FEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDS--------------IICGITSV 279 (343)
T ss_pred cCcceeEe---ecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCc--------------ccCCceeE
Confidence 99988775 67999999999999999999999999999999999988765443222 23489999
Q ss_pred EEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 234 KFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 234 ~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
+||..|++|+.|..|.++.+||.-.++.+..+.||...|.++-.
T Consensus 280 ~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~ 323 (343)
T KOG0286|consen 280 AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGV 323 (343)
T ss_pred EEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEE
Confidence 99999999999999999999999999999999999999998854
No 10
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.93 E-value=2.8e-25 Score=193.20 Aligned_cols=180 Identities=21% Similarity=0.310 Sum_probs=150.0
Q ss_pred cccCCccccccccCCCCCcccch-----hhh-----------hcccc-----CccCCCCee---eccccceEeeeeecCC
Q 023642 60 LKSEPKEHFSKEVPGKRHLPVST-----VKM-----------LAGRE-----GNYSGRGRF---SAADCCHMLSRYLPVN 115 (279)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----------~~~~~-----~~~~~~~~~---~~~d~~~~~~~~~~~~ 115 (279)
+.+|...++...+.+.+.+.++- +++ .+||. ..|+|.|-| .+.|++..+|......
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~ 526 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK 526 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC
Confidence 56666667777777766655431 111 12222 247888876 5678999999988888
Q ss_pred CCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 023642 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (279)
Q Consensus 116 ~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (279)
...++.+|-+.|.|+.|+|+..++++||.|.+||+||+.+|..++. +.+|.++|++++|||+|++|++|+.|+.|++
T Consensus 527 PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRi---F~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~i 603 (707)
T KOG0263|consen 527 PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRI---FTGHKGPVTALAFSPCGRYLASGDEDGLIKI 603 (707)
T ss_pred chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEE---ecCCCCceEEEEEcCCCceEeecccCCcEEE
Confidence 8888999999999999999999999999999999999999988765 5799999999999999999999999999999
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
||+.++....... +|++.|+++.|+.||..||+|+.|.+|++||+..
T Consensus 604 WDl~~~~~v~~l~----------------~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 604 WDLANGSLVKQLK----------------GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEcCCCcchhhhh----------------cccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999988743221 3778999999999999999999999999999975
No 11
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=8.4e-24 Score=185.71 Aligned_cols=167 Identities=28% Similarity=0.327 Sum_probs=141.8
Q ss_pred ccCCCCee---eccccceEeeeeecCC--CCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEc-CCCeEEeeeeec
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVN--GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDV-ERGWKIQKDILA 165 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~--~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~-~~~~~~~~~~~~ 165 (279)
.|+++|.+ .+.++.+++|...... ....+.+|...|++++|+||++++++++.|++|+|||+ ..+.++.. +
T Consensus 166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~---l 242 (456)
T KOG0266|consen 166 DFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKT---L 242 (456)
T ss_pred EEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEE---e
Confidence 56777776 4578888899885555 45557899999999999999999999999999999999 44455544 5
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEe
Q 023642 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (279)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~ 245 (279)
.+|...|++++|+|+++++++|+.|++|+|||++++++..... +|...|.+++|++++.+|+++
T Consensus 243 ~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~----------------~hs~~is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 243 KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK----------------GHSDGISGLAFSPDGNLLVSA 306 (456)
T ss_pred cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee----------------ccCCceEEEEECCCCCEEEEc
Confidence 7999999999999999999999999999999999988754432 277799999999999999999
Q ss_pred cCCCeEEEEECCCCe--EEEEEeCCCcc--eeEEEe
Q 023642 246 SSDDCIYVYDLEANK--LSLRILAHTVN--IALWIT 277 (279)
Q Consensus 246 s~d~~i~vwd~~~~~--~~~~~~~h~~~--v~~v~~ 277 (279)
+.|+.|++||+.++. ++..+.++... ++++..
T Consensus 307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~f 342 (456)
T KOG0266|consen 307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQF 342 (456)
T ss_pred CCCccEEEEECCCCceeeeecccCCCCCCceeEEEE
Confidence 999999999999999 67888887766 666654
No 12
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=4.4e-23 Score=181.16 Aligned_cols=169 Identities=24% Similarity=0.324 Sum_probs=142.7
Q ss_pred ccCCCCee---eccccceEeeee-ecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccC
Q 023642 92 NYSGRGRF---SAADCCHMLSRY-LPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS 167 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~-~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 167 (279)
.+++++.+ .+.|.++.+|+. .+.....++.+|...|++++|+|+++++++|+.|++|+|||+.++++... +.+
T Consensus 210 ~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~---l~~ 286 (456)
T KOG0266|consen 210 AFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRK---LKG 286 (456)
T ss_pred EECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEe---eec
Confidence 46777766 577899999999 33455677999999999999999999999999999999999999887765 578
Q ss_pred CCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC
Q 023642 168 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (279)
Q Consensus 168 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~ 247 (279)
|...|++++|++++++|++++.|+.|++||+.++....... +..... .. .++++.|+|++.++++++.
T Consensus 287 hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~---------~~~~~~--~~-~~~~~~fsp~~~~ll~~~~ 354 (456)
T KOG0266|consen 287 HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKL---------LSGAEN--SA-PVTSVQFSPNGKYLLSASL 354 (456)
T ss_pred cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeec---------ccCCCC--CC-ceeEEEECCCCcEEEEecC
Confidence 99999999999999999999999999999999998431111 111111 12 6899999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEeCCCcceeEE
Q 023642 248 DDCIYVYDLEANKLSLRILAHTVNIALW 275 (279)
Q Consensus 248 d~~i~vwd~~~~~~~~~~~~h~~~v~~v 275 (279)
|+.+++||+..+.++..+.+|...+.+.
T Consensus 355 d~~~~~w~l~~~~~~~~~~~~~~~~~~~ 382 (456)
T KOG0266|consen 355 DRTLKLWDLRSGKSVGTYTGHSNLVRCI 382 (456)
T ss_pred CCeEEEEEccCCcceeeecccCCcceeE
Confidence 9999999999999999999998875443
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.91 E-value=1e-24 Score=177.03 Aligned_cols=165 Identities=18% Similarity=0.216 Sum_probs=138.3
Q ss_pred CCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCc
Q 023642 94 SGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW 170 (279)
Q Consensus 94 ~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 170 (279)
+.++.+ +..++.+.+|+............|...|.+++|||....|++++.||+|+|||....+.... +.+|..
T Consensus 147 s~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v---L~GHgw 223 (464)
T KOG0284|consen 147 SHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV---LRGHGW 223 (464)
T ss_pred ccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe---eccCCC
Confidence 455544 23456777777644433333445569999999999999999999999999999987754333 479999
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCe
Q 023642 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (279)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~ 250 (279)
.|.+++|+|...+|++++.|..|++||.+++.++.... +|+..|..+.|+|++++|+|+|.|..
T Consensus 224 dVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh----------------~HKntVl~~~f~~n~N~Llt~skD~~ 287 (464)
T KOG0284|consen 224 DVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH----------------GHKNTVLAVKFNPNGNWLLTGSKDQS 287 (464)
T ss_pred CcceeccCCccceeEEccCCceeEeecCCCcchhhhhh----------------hccceEEEEEEcCCCCeeEEccCCce
Confidence 99999999999999999999999999999999865432 27789999999999999999999999
Q ss_pred EEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 251 IYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 251 i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
++++|+++-+.++++++|+..|+++.+
T Consensus 288 ~kv~DiR~mkEl~~~r~Hkkdv~~~~W 314 (464)
T KOG0284|consen 288 CKVFDIRTMKELFTYRGHKKDVTSLTW 314 (464)
T ss_pred EEEEehhHhHHHHHhhcchhhheeecc
Confidence 999999999999999999999998854
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.6e-23 Score=164.80 Aligned_cols=157 Identities=14% Similarity=0.126 Sum_probs=140.9
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.+.|.++..|.+...-...++.+|...|..++.+.||..+++++.|.+|++|-+.++++... ++.|+-+|.+++|.|
T Consensus 211 ~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~---lR~hEh~vEci~wap 287 (406)
T KOG0295|consen 211 CSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAE---LREHEHPVECIAWAP 287 (406)
T ss_pred cccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhh---hhccccceEEEEecc
Confidence 45688999999999988899999999999999999999999999999999999999876554 678888999999988
Q ss_pred C---------------CCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEE
Q 023642 180 D---------------QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (279)
Q Consensus 180 ~---------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t 244 (279)
. ++++.+++.|++|++||+.++.+.. ++.+ |..+|..++|+|.|+||++
T Consensus 288 ~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~-----------tL~g-----hdnwVr~~af~p~Gkyi~S 351 (406)
T KOG0295|consen 288 ESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLF-----------TLVG-----HDNWVRGVAFSPGGKYILS 351 (406)
T ss_pred cccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEE-----------EEec-----ccceeeeeEEcCCCeEEEE
Confidence 5 2489999999999999999998743 2333 5559999999999999999
Q ss_pred ecCCCeEEEEECCCCeEEEEEeCCCcceeEE
Q 023642 245 GSSDDCIYVYDLEANKLSLRILAHTVNIALW 275 (279)
Q Consensus 245 ~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v 275 (279)
+..|+++++||+++++|+.+++.|...|+++
T Consensus 352 caDDktlrvwdl~~~~cmk~~~ah~hfvt~l 382 (406)
T KOG0295|consen 352 CADDKTLRVWDLKNLQCMKTLEAHEHFVTSL 382 (406)
T ss_pred EecCCcEEEEEeccceeeeccCCCcceeEEE
Confidence 9999999999999999999999999998876
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.91 E-value=1.8e-22 Score=154.64 Aligned_cols=182 Identities=16% Similarity=0.142 Sum_probs=142.1
Q ss_pred cCCCCee--eccccceEeeeeecCCC--CceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCC
Q 023642 93 YSGRGRF--SAADCCHMLSRYLPVNG--PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL 168 (279)
Q Consensus 93 ~~~~~~~--~~~d~~~~~~~~~~~~~--~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 168 (279)
+.+++++ .+....+.++++..... ...+++|+..|+++.|..||+++++|++||+++|||++...+.+. ..|
T Consensus 48 iTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~----~~~ 123 (311)
T KOG0315|consen 48 ITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRN----YQH 123 (311)
T ss_pred EcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchh----ccC
Confidence 4555554 34556777888776554 355899999999999999999999999999999999998655443 467
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeee--ccccccceeEEeeCCC-----------------------
Q 023642 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA--NVTEIHDGLDFSAADD----------------------- 223 (279)
Q Consensus 169 ~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~----------------------- 223 (279)
..+|.++..+|+...|++|..+|.|++||+.+..+.... ........+...+++.
T Consensus 124 ~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s 203 (311)
T KOG0315|consen 124 NSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTAS 203 (311)
T ss_pred CCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccc
Confidence 789999999999999999999999999999886542221 1111111222222222
Q ss_pred --------CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC-eEEEEEeCCCcceeEEEee
Q 023642 224 --------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTVNIALWITC 278 (279)
Q Consensus 224 --------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~-~~~~~~~~h~~~v~~v~~~ 278 (279)
..|.+.+..+.+|||+++|+++|.|.+++||+..+- +....+++|..+++..+.+
T Consensus 204 ~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS 267 (311)
T KOG0315|consen 204 ELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFS 267 (311)
T ss_pred cceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeec
Confidence 457888999999999999999999999999999987 7778899999998887654
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=155.49 Aligned_cols=169 Identities=21% Similarity=0.206 Sum_probs=136.1
Q ss_pred ccCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeee------
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD------ 162 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~------ 162 (279)
+|..+|+. ++.|+.+.+|++..... .....|.++|+++..+|+...|++|.++|.|++||+....+....
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~-qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSC-QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCccc-chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 56677775 67899999999987433 345667799999999999999999999999999999754221111
Q ss_pred ----------------------------------------eeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 023642 163 ----------------------------------------ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (279)
Q Consensus 163 ----------------------------------------~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~ 202 (279)
..+..|++.+..+.+|||+++|++++.|.+++||++.+--
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 1234778889999999999999999999999999998762
Q ss_pred eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
. .... +. +|..+++.++||.||+||+||+.|+.+++||+..++.+..+.||.....|+.
T Consensus 249 k--le~~--------l~-----gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ 307 (311)
T KOG0315|consen 249 K--LELV--------LT-----GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVA 307 (311)
T ss_pred e--eEEE--------ee-----cCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEE
Confidence 1 1111 11 2556999999999999999999999999999999999999999988766553
No 17
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1e-22 Score=165.85 Aligned_cols=202 Identities=16% Similarity=0.204 Sum_probs=154.1
Q ss_pred CCCCcccchhhhhccccCc-----cCCCCee---eccccceEeeeeecCCC---CceeeCCCCCeEEEEECCCCCEEEEE
Q 023642 74 GKRHLPVSTVKMLAGREGN-----YSGRGRF---SAADCCHMLSRYLPVNG---PWPVDQTTSRAYVSQFSADGSLFVAG 142 (279)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~---~~~d~~~~~~~~~~~~~---~~~l~~h~~~V~~~~~spd~~~l~s~ 142 (279)
+..+.+..+.+++..|... |+++|+| ++.|.+.++|...+... ..++.+|..+|..+.||||.++|+++
T Consensus 208 ~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaC 287 (519)
T KOG0293|consen 208 GRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLAC 287 (519)
T ss_pred CcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEec
Confidence 4666677788999998874 7999998 56799999999988666 56789999999999999999999999
Q ss_pred eCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccc-cceeEEeeC
Q 023642 143 FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEI-HDGLDFSAA 221 (279)
Q Consensus 143 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~ 221 (279)
+.|..+.+||+.+|.+..... .++...+.+++|.|||..+++|+.|+.+..||+.+............ ...+....+
T Consensus 288 g~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~D 365 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYD 365 (519)
T ss_pred CchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCC
Confidence 999999999999998766532 34567899999999999999999999999999865433211111100 000011111
Q ss_pred CC------------------------------------------------------------------CCccc--cEEEE
Q 023642 222 DD------------------------------------------------------------------GGYSF--GIFSL 233 (279)
Q Consensus 222 ~~------------------------------------------------------------------~~~~~--~v~~~ 233 (279)
+. .||+. -+..-
T Consensus 366 gk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS 445 (519)
T KOG0293|consen 366 GKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRS 445 (519)
T ss_pred CcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEe
Confidence 10 23332 23333
Q ss_pred EEec-CCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 234 KFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 234 ~~sp-~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
+|-- +..++++||+|+.|+||+..+|+++..+.||...||+|.+
T Consensus 446 CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVsw 490 (519)
T KOG0293|consen 446 CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSW 490 (519)
T ss_pred ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEec
Confidence 4543 4578899999999999999999999999999999999975
No 18
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.90 E-value=7.4e-23 Score=163.95 Aligned_cols=177 Identities=15% Similarity=0.171 Sum_probs=153.7
Q ss_pred chhhhhccccC-----ccCCCC-ee--eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 023642 81 STVKMLAGREG-----NYSGRG-RF--SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYD 152 (279)
Q Consensus 81 ~~~~~~~~~~~-----~~~~~~-~~--~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd 152 (279)
...+++.+|.. .+.|.. .| ++.|+++.+|++.......++.||-..|..+++|+-..++++++.|+.|+.||
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 34556666664 234433 33 67899999999999988899999999999999999999999999999999999
Q ss_pred cCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEE
Q 023642 153 VERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFS 232 (279)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 232 (279)
+...+.++. ..+|-+.|.+++.+|.-..|++|+.|.++++||+++....... . ||...|.+
T Consensus 222 Le~nkvIR~---YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l-----------~-----GH~~~V~~ 282 (460)
T KOG0285|consen 222 LEYNKVIRH---YHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL-----------S-----GHTNPVAS 282 (460)
T ss_pred chhhhhHHH---hccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe-----------c-----CCCCccee
Confidence 999876654 5799999999999999999999999999999999997764432 2 37779999
Q ss_pred EEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 233 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 233 ~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
+.+.|....+++||.|++|++||++.|+.+.++..|...|.+++
T Consensus 283 V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~ 326 (460)
T KOG0285|consen 283 VMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALC 326 (460)
T ss_pred EEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEe
Confidence 99999999999999999999999999999999999999998875
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.90 E-value=4.6e-23 Score=165.11 Aligned_cols=141 Identities=18% Similarity=0.195 Sum_probs=127.2
Q ss_pred eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 023642 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~ 198 (279)
++.+|.++|.|+++.|.+.+|++|+.|++++|||+.+|+.... +.+|...|..+++|+.-.|+++++.|+.|+.||+
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lklt---ltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLT---LTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEe---ecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 4789999999999999999999999999999999999976543 5689999999999999999999999999999999
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEee
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~~ 278 (279)
+..+.+.- + .||-+.|++++.+|.-..|+||+.|.+++|||+++...+..+.||..+|.+|...
T Consensus 223 e~nkvIR~-----------Y-----hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~ 286 (460)
T KOG0285|consen 223 EYNKVIRH-----------Y-----HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQ 286 (460)
T ss_pred hhhhhHHH-----------h-----ccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEee
Confidence 98775321 1 1377799999999999999999999999999999999999999999999998753
No 20
>PTZ00420 coronin; Provisional
Probab=99.90 E-value=4.7e-22 Score=175.82 Aligned_cols=155 Identities=14% Similarity=0.148 Sum_probs=123.8
Q ss_pred ccceEeeeeecCCCCceeeCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCeE-Ee----eeeeccCCCcceEEEE
Q 023642 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWK-IQ----KDILAKSLRWTVTDTS 176 (279)
Q Consensus 103 d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd-~~~l~s~~~d~~i~iwd~~~~~~-~~----~~~~~~~~~~~v~~~~ 176 (279)
...+.+|+.........+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.++.. .. ....+.+|...|.+++
T Consensus 53 ~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVa 132 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIID 132 (568)
T ss_pred eeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEE
Confidence 344556655444344568899999999999996 78999999999999999976421 11 1123468889999999
Q ss_pred ECCCCCE-EEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEE
Q 023642 177 LSPDQRH-LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 177 ~sp~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd 255 (279)
|+|++.. |++++.|++|+|||+++++...... |...|.+++|+|+|.+|++++.|+.|+|||
T Consensus 133 f~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-----------------~~~~V~SlswspdG~lLat~s~D~~IrIwD 195 (568)
T PTZ00420 133 WNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-----------------MPKKLSSLKWNIKGNLLSGTCVGKHMHIID 195 (568)
T ss_pred ECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-----------------cCCcEEEEEECCCCCEEEEEecCCEEEEEE
Confidence 9999876 5789999999999999887532211 223799999999999999999999999999
Q ss_pred CCCCeEEEEEeCCCcceeE
Q 023642 256 LEANKLSLRILAHTVNIAL 274 (279)
Q Consensus 256 ~~~~~~~~~~~~h~~~v~~ 274 (279)
+++++.+.++.+|.+.+.+
T Consensus 196 ~Rsg~~i~tl~gH~g~~~s 214 (568)
T PTZ00420 196 PRKQEIASSFHIHDGGKNT 214 (568)
T ss_pred CCCCcEEEEEecccCCcee
Confidence 9999999999999886543
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.90 E-value=3.3e-22 Score=165.19 Aligned_cols=158 Identities=19% Similarity=0.227 Sum_probs=136.1
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.+.|.++.+..+-...+..++.+|.++|.++.|+|.+.+|++++.|++++||......+.+. +..|...|..+.|+|
T Consensus 335 s~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~---l~~Hskei~t~~wsp 411 (524)
T KOG0273|consen 335 SSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHD---LQAHSKEIYTIKWSP 411 (524)
T ss_pred cCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhh---hhhhccceeeEeecC
Confidence 34566777788777777888999999999999999999999999999999999887766665 678998999999999
Q ss_pred CC---------CEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCe
Q 023642 180 DQ---------RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (279)
Q Consensus 180 ~~---------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~ 250 (279)
+| ..|++++.|.+|++||+..+.+..... . |..+|++++|+|+|+++++|+.|+.
T Consensus 412 ~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~-----------k-----H~~pVysvafS~~g~ylAsGs~dg~ 475 (524)
T KOG0273|consen 412 TGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM-----------K-----HQEPVYSVAFSPNGRYLASGSLDGC 475 (524)
T ss_pred CCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec-----------c-----CCCceEEEEecCCCcEEEecCCCCe
Confidence 76 379999999999999999998865432 2 6669999999999999999999999
Q ss_pred EEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 251 IYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 251 i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
|.+|+.++++.++.+.+. +.|..|.+
T Consensus 476 V~iws~~~~~l~~s~~~~-~~Ifel~W 501 (524)
T KOG0273|consen 476 VHIWSTKTGKLVKSYQGT-GGIFELCW 501 (524)
T ss_pred eEeccccchheeEeecCC-CeEEEEEE
Confidence 999999999999999863 44666554
No 22
>PTZ00421 coronin; Provisional
Probab=99.90 E-value=1.5e-21 Score=171.48 Aligned_cols=139 Identities=17% Similarity=0.123 Sum_probs=117.6
Q ss_pred ceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEE----eeeeeccCCCcceEEEEECCCC-CEEEEEeCCC
Q 023642 118 WPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKI----QKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSP 191 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~ 191 (279)
..+.+|.+.|++++|+| ++++|++|+.|++|++||+.++... .....+.+|...|.+++|+|++ .+|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 35789999999999999 8899999999999999999765211 1123457899999999999986 6899999999
Q ss_pred eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcc
Q 023642 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVN 271 (279)
Q Consensus 192 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~ 271 (279)
+|+|||+.+++..... . +|...|.+++|+|+|.+|++++.|++|++||+++++.+.++.+|.+.
T Consensus 149 tVrIWDl~tg~~~~~l-----------~-----~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~ 212 (493)
T PTZ00421 149 VVNVWDVERGKAVEVI-----------K-----CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA 212 (493)
T ss_pred EEEEEECCCCeEEEEE-----------c-----CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC
Confidence 9999999987653221 1 25568999999999999999999999999999999999999999765
Q ss_pred e
Q 023642 272 I 272 (279)
Q Consensus 272 v 272 (279)
+
T Consensus 213 ~ 213 (493)
T PTZ00421 213 K 213 (493)
T ss_pred c
Confidence 3
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=6.5e-22 Score=171.72 Aligned_cols=160 Identities=17% Similarity=0.193 Sum_probs=128.4
Q ss_pred cceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCE
Q 023642 104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH 183 (279)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 183 (279)
+.+.+|.+....-.....+|...+++++++|||+++|+|+.||+|+|||..++-|... +..|+..|+++.|+.+|+.
T Consensus 330 gQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vT---FteHts~Vt~v~f~~~g~~ 406 (893)
T KOG0291|consen 330 GQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVT---FTEHTSGVTAVQFTARGNV 406 (893)
T ss_pred ceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEE---eccCCCceEEEEEEecCCE
Confidence 4678898877776667789999999999999999999999999999999999988765 6799999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCceeeeeccccccc--ee--------EEeeCCC------------------CCccccEEEEEE
Q 023642 184 LVYASMSPIVHIVDVGSGTMESLANVTEIHD--GL--------DFSAADD------------------GGYSFGIFSLKF 235 (279)
Q Consensus 184 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~--~~--------~~~~~~~------------------~~~~~~v~~~~~ 235 (279)
+++.+.||+|+.||+...+.-.......... .+ .+.+..+ .||.++|.+++|
T Consensus 407 llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f 486 (893)
T KOG0291|consen 407 LLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSF 486 (893)
T ss_pred EEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEE
Confidence 9999999999999998766532222221111 01 1111111 789999999999
Q ss_pred ecCCCEEEEecCCCeEEEEECCCC-eEEEEEe
Q 023642 236 STDGRELVAGSSDDCIYVYDLEAN-KLSLRIL 266 (279)
Q Consensus 236 sp~g~~l~t~s~d~~i~vwd~~~~-~~~~~~~ 266 (279)
+|++..|+++|.|.+|++||+-.. ..+.+++
T Consensus 487 ~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~ 518 (893)
T KOG0291|consen 487 SPDGSLLASGSWDKTVRIWDIFSSSGTVETLE 518 (893)
T ss_pred ccccCeEEeccccceEEEEEeeccCceeeeEe
Confidence 999999999999999999998643 2334443
No 24
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=1.2e-22 Score=175.71 Aligned_cols=159 Identities=16% Similarity=0.217 Sum_probs=140.1
Q ss_pred eccccceEeeeeecCC---CCc------eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCc
Q 023642 100 SAADCCHMLSRYLPVN---GPW------PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW 170 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~---~~~------~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 170 (279)
.+.|+++.+|.+.... .+. +...|...|++++++|+.+++|+||+|++.+||+++...... .+.+|+.
T Consensus 430 vS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~---vLsGH~R 506 (775)
T KOG0319|consen 430 VSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLG---VLSGHTR 506 (775)
T ss_pred ecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEE---EeeCCcc
Confidence 6789999999886521 122 236899999999999999999999999999999999765544 3689999
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCe
Q 023642 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (279)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~ 250 (279)
.|+++.|+|..+.++++|.|++|+||.+.+..+... |.+ |...|..+.|-.+|+.|++++.||-
T Consensus 507 Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT-----------~eG-----H~~aVlra~F~~~~~qliS~~adGl 570 (775)
T KOG0319|consen 507 GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKT-----------FEG-----HTSAVLRASFIRNGKQLISAGADGL 570 (775)
T ss_pred ceEEEEeccccceeEeccCCceEEEEEeccceeeee-----------ecC-----ccceeEeeeeeeCCcEEEeccCCCc
Confidence 999999999999999999999999999999887542 333 6679999999999999999999999
Q ss_pred EEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 251 IYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 251 i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
|++|++++++|+.++.+|.+.|+++..
T Consensus 571 iKlWnikt~eC~~tlD~H~DrvWaL~~ 597 (775)
T KOG0319|consen 571 IKLWNIKTNECEMTLDAHNDRVWALSV 597 (775)
T ss_pred EEEEeccchhhhhhhhhccceeEEEee
Confidence 999999999999999999999999874
No 25
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.9e-21 Score=150.62 Aligned_cols=146 Identities=19% Similarity=0.299 Sum_probs=123.0
Q ss_pred ceeeCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCeE-EeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 023642 118 WPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWK-IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd-~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (279)
..+.+|.+++..++|+|- |..|++++.|+.|++|+...+.. ..+...-.+|+..|++++|+|.|++|++++.|.++.|
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI 87 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence 457899999999999997 88999999999999999985322 2222334578999999999999999999999999999
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC---CeEEEEEeCCCcce
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA---NKLSLRILAHTVNI 272 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~---~~~~~~~~~h~~~v 272 (279)
|.-..++..+... +. ||...|-+++|+++|.+|||+++|+.|-||.+.. -+++..++.|.+.|
T Consensus 88 w~k~~~efecv~~---------lE-----GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDV 153 (312)
T KOG0645|consen 88 WKKEDGEFECVAT---------LE-----GHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDV 153 (312)
T ss_pred eecCCCceeEEee---------ee-----ccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccc
Confidence 9888776554332 22 3556999999999999999999999999999974 35889999999999
Q ss_pred eEEEe
Q 023642 273 ALWIT 277 (279)
Q Consensus 273 ~~v~~ 277 (279)
..|++
T Consensus 154 K~V~W 158 (312)
T KOG0645|consen 154 KHVIW 158 (312)
T ss_pred cEEEE
Confidence 98875
No 26
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.89 E-value=1.4e-22 Score=167.78 Aligned_cols=191 Identities=19% Similarity=0.174 Sum_probs=148.7
Q ss_pred hhhhccccCccCCCCee---------eccccceEeeeeec-CCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 023642 83 VKMLAGREGNYSGRGRF---------SAADCCHMLSRYLP-VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYD 152 (279)
Q Consensus 83 ~~~~~~~~~~~~~~~~~---------~~~d~~~~~~~~~~-~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd 152 (279)
...+.+|..+++....| .+.|+.+.+|+++. .....++.+|..+|.+++|+++|..|.+++.|+.|++||
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD 286 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD 286 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeec
Confidence 34567777665443322 57899999999998 455677999999999999999999999999999999999
Q ss_pred cCCCeEEeeeeeccCCCcceEEEEECCCC-CEEEEEeCCCeEEEEECCCCceeee-eccccccceeEEeeCCC-------
Q 023642 153 VERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESL-ANVTEIHDGLDFSAADD------- 223 (279)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~------- 223 (279)
+++|++...+. ....+.++.|+||+ +.+++|+.|+.|+.||+++++...- -........+.|...+.
T Consensus 287 tETG~~~~~f~----~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 287 TETGQVLSRFH----LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred cccceEEEEEe----cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 99998887632 23368999999998 7889999999999999999886211 11111222223322222
Q ss_pred ----------------------------------------------------------------CCcc--ccEEEEEEec
Q 023642 224 ----------------------------------------------------------------GGYS--FGIFSLKFST 237 (279)
Q Consensus 224 ----------------------------------------------------------------~~~~--~~v~~~~~sp 237 (279)
.||. +.-..+.|||
T Consensus 363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp 442 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP 442 (503)
T ss_pred CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence 4453 4456789999
Q ss_pred CCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 238 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 238 ~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
||.+|++|+.||.+.+||.++-+.+.++++|.+.+..+.+
T Consensus 443 DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~w 482 (503)
T KOG0282|consen 443 DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDW 482 (503)
T ss_pred CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEe
Confidence 9999999999999999999999999999999888776643
No 27
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.88 E-value=2.9e-23 Score=164.56 Aligned_cols=167 Identities=20% Similarity=0.258 Sum_probs=145.2
Q ss_pred ccCCCCee---eccccceEeeeeecCCCCc--------eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEe
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVNGPW--------PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ 160 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~~~~--------~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~ 160 (279)
.|+|+|.| ++.|+.+-+|++....... .+--+.+.|.|+.||.|...|++|+.||+|++|.+.+|.|++
T Consensus 220 ~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClR 299 (508)
T KOG0275|consen 220 RFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLR 299 (508)
T ss_pred eeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHH
Confidence 58999998 5778999999988754332 245678999999999999999999999999999999999988
Q ss_pred eeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCC
Q 023642 161 KDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240 (279)
Q Consensus 161 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 240 (279)
++ .+.|...|+++.|+.|+..+++++.|.++++--++.|++..- | .||++.|+...|++||.
T Consensus 300 rF--drAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKE-----------f-----rGHsSyvn~a~ft~dG~ 361 (508)
T KOG0275|consen 300 RF--DRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKE-----------F-----RGHSSYVNEATFTDDGH 361 (508)
T ss_pred Hh--hhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHH-----------h-----cCccccccceEEcCCCC
Confidence 74 358888999999999999999999999999999999987432 1 24778999999999999
Q ss_pred EEEEecCCCeEEEEECCCCeEEEEEe--CCCcceeEEE
Q 023642 241 ELVAGSSDDCIYVYDLEANKLSLRIL--AHTVNIALWI 276 (279)
Q Consensus 241 ~l~t~s~d~~i~vwd~~~~~~~~~~~--~h~~~v~~v~ 276 (279)
++++++.|++|+||+.++.+|+.+++ +..-+|++++
T Consensus 362 ~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~ 399 (508)
T KOG0275|consen 362 HIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVI 399 (508)
T ss_pred eEEEecCCccEEEecCcchhhhhhccCCCCcccceeEE
Confidence 99999999999999999999999997 4556777775
No 28
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.88 E-value=1.7e-21 Score=152.86 Aligned_cols=165 Identities=17% Similarity=0.192 Sum_probs=139.8
Q ss_pred ccCCCCee---eccccceEeeeeec-CCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccC
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLP-VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS 167 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~-~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 167 (279)
.|.|+|.+ ++.|+.+.+|+... -+..+.+++|.+.|+.+.|.+|++.+++++.|.+|+.||+++|++..+ .+.
T Consensus 54 ~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk---~k~ 130 (338)
T KOG0265|consen 54 KFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRK---HKG 130 (338)
T ss_pred EECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeeh---hcc
Confidence 35666655 46788999999665 556678999999999999999999999999999999999999988876 578
Q ss_pred CCcceEEEEECCCCC-EEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec
Q 023642 168 LRWTVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 168 ~~~~v~~~~~sp~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
|..-|..+.-+.-|. ++.+++.|+++++||++......... ....++++.|..++..+.+|+
T Consensus 131 h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-----------------~kyqltAv~f~d~s~qv~sgg 193 (338)
T KOG0265|consen 131 HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-----------------NKYQLTAVGFKDTSDQVISGG 193 (338)
T ss_pred ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-----------------cceeEEEEEecccccceeecc
Confidence 888888888544554 46788999999999999877643321 223799999999999999999
Q ss_pred CCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 247 SDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 247 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
-|+.|++||++.+..+.++.||.+.|+.+-
T Consensus 194 Idn~ikvWd~r~~d~~~~lsGh~DtIt~ls 223 (338)
T KOG0265|consen 194 IDNDIKVWDLRKNDGLYTLSGHADTITGLS 223 (338)
T ss_pred ccCceeeeccccCcceEEeecccCceeeEE
Confidence 999999999999999999999999999875
No 29
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.6e-20 Score=145.44 Aligned_cols=163 Identities=14% Similarity=0.069 Sum_probs=132.9
Q ss_pred eccccceEeeeeecCCCCce----e-eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEE
Q 023642 100 SAADCCHMLSRYLPVNGPWP----V-DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD 174 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~----l-~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 174 (279)
.+.|+.+++|....... +. + .+|+..|.+++|+|.|++|++|+.|.++.||.-..+... ....+.+|+..|.+
T Consensus 33 cg~Dk~vriw~~~~~~s-~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efe-cv~~lEGHEnEVK~ 110 (312)
T KOG0645|consen 33 CGTDKAVRIWSTSSGDS-WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFE-CVATLEGHENEVKC 110 (312)
T ss_pred ecCCceEEEEecCCCCc-EEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCcee-EEeeeeccccceeE
Confidence 46788888888764221 22 2 579999999999999999999999999999987765322 22346799999999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEE
Q 023642 175 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY 254 (279)
Q Consensus 175 ~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vw 254 (279)
++|+++|++||+++.|+.|.||.+..+.......... .|++.|-.+.|+|...+|+++|.|++|++|
T Consensus 111 Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~-------------~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~ 177 (312)
T KOG0645|consen 111 VAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ-------------EHTQDVKHVIWHPTEDLLFSCSYDNTIKVY 177 (312)
T ss_pred EEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeec-------------cccccccEEEEcCCcceeEEeccCCeEEEE
Confidence 9999999999999999999999998666533332222 277799999999999999999999999999
Q ss_pred ECC---CCeEEEEEeCCCcceeEEEe
Q 023642 255 DLE---ANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 255 d~~---~~~~~~~~~~h~~~v~~v~~ 277 (279)
+-. .-.++++|.+|...|.++..
T Consensus 178 ~~~~dddW~c~~tl~g~~~TVW~~~F 203 (312)
T KOG0645|consen 178 RDEDDDDWECVQTLDGHENTVWSLAF 203 (312)
T ss_pred eecCCCCeeEEEEecCccceEEEEEe
Confidence 876 24689999999998888753
No 30
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.87 E-value=2.1e-20 Score=156.55 Aligned_cols=177 Identities=21% Similarity=0.216 Sum_probs=136.9
Q ss_pred ccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCC
Q 023642 101 AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 180 (279)
+.|.++....--|-.-...+..|..-|+++.|+|||.+|++++.|+++.+||=.+|+.+..+....+|.+.|.+++|+||
T Consensus 167 sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPD 246 (603)
T KOG0318|consen 167 SDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPD 246 (603)
T ss_pred cCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCC
Confidence 34444443332222223446789999999999999999999999999999999999888775555689999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeeeccccc----cceeEEe--------eCCC---------------CCccccEEEE
Q 023642 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEI----HDGLDFS--------AADD---------------GGYSFGIFSL 233 (279)
Q Consensus 181 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~~~~~~~--------~~~~---------------~~~~~~v~~~ 233 (279)
+..+++++.|.+++|||+.+..+......... .-++.+. -.+. .||...|+++
T Consensus 247 s~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaL 326 (603)
T KOG0318|consen 247 STQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITAL 326 (603)
T ss_pred CceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEE
Confidence 99999999999999999998876443332221 1122221 0000 7899999999
Q ss_pred EEecCCCEEEEecCCCeEEEEECCCCeEEEEE-eCCCcceeEEEe
Q 023642 234 KFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTVNIALWIT 277 (279)
Q Consensus 234 ~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~v~~ 277 (279)
+.+|++++|++|+.||.|.-||+.+|..-... ++|...|.++.+
T Consensus 327 tv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~ 371 (603)
T KOG0318|consen 327 TVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAA 371 (603)
T ss_pred EEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEee
Confidence 99999999999999999999999988765444 678888877754
No 31
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.87 E-value=2.3e-20 Score=154.39 Aligned_cols=162 Identities=15% Similarity=0.127 Sum_probs=132.3
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeee-----------------
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD----------------- 162 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~----------------- 162 (279)
+..++..++|+. +......+..|.++|.++.|+.+|.+|++++.|+++.+||..++.....+
T Consensus 253 G~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~ 331 (524)
T KOG0273|consen 253 GSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE 331 (524)
T ss_pred eecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCce
Confidence 445666676764 33344568899999999999999999999999999999999776443321
Q ss_pred ---------------------eeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeC
Q 023642 163 ---------------------ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA 221 (279)
Q Consensus 163 ---------------------~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 221 (279)
..+.+|.+.|.++.|.|.|.+|++++.|++++||............
T Consensus 332 F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~------------- 398 (524)
T KOG0273|consen 332 FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ------------- 398 (524)
T ss_pred EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh-------------
Confidence 1234789999999999999999999999999999987655432211
Q ss_pred CCCCccccEEEEEEecCC---------CEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEee
Q 023642 222 DDGGYSFGIFSLKFSTDG---------RELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 222 ~~~~~~~~v~~~~~sp~g---------~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~~ 278 (279)
.|+..|+.+.|+|+| ..+++++.|++|++||+..+.++.+|..|..+|.+|..+
T Consensus 399 ---~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS 461 (524)
T KOG0273|consen 399 ---AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFS 461 (524)
T ss_pred ---hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEec
Confidence 277789999999965 478899999999999999999999999999999998753
No 32
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.87 E-value=3.1e-22 Score=162.69 Aligned_cols=158 Identities=13% Similarity=0.153 Sum_probs=131.2
Q ss_pred cccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCC
Q 023642 102 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 181 (279)
Q Consensus 102 ~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 181 (279)
.-+..-+|+...-.-..++..|.++|.++.|++++.++++|+.+|.|++|+..-... .. ....|...|++++|+|..
T Consensus 116 ~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV-k~--~~ahh~eaIRdlafSpnD 192 (464)
T KOG0284|consen 116 QSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV-KI--IQAHHAEAIRDLAFSPND 192 (464)
T ss_pred ccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh-HH--hhHhhhhhhheeccCCCC
Confidence 334455666655555566889999999999999999999999999999999875422 11 123444789999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeE
Q 023642 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (279)
Q Consensus 182 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~ 261 (279)
..+++++.|++|+|||....+..... . ||...|.++.|+|....++++|.|..|++||-++|.|
T Consensus 193 skF~t~SdDg~ikiWdf~~~kee~vL-----------~-----GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~c 256 (464)
T KOG0284|consen 193 SKFLTCSDDGTIKIWDFRMPKEERVL-----------R-----GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSC 256 (464)
T ss_pred ceeEEecCCCeEEEEeccCCchhhee-----------c-----cCCCCcceeccCCccceeEEccCCceeEeecCCCcch
Confidence 99999999999999999887764332 1 3666999999999999999999999999999999999
Q ss_pred EEEEeCCCcceeEEEee
Q 023642 262 SLRILAHTVNIALWITC 278 (279)
Q Consensus 262 ~~~~~~h~~~v~~v~~~ 278 (279)
+.++.+|+..|..+..+
T Consensus 257 l~tlh~HKntVl~~~f~ 273 (464)
T KOG0284|consen 257 LATLHGHKNTVLAVKFN 273 (464)
T ss_pred hhhhhhccceEEEEEEc
Confidence 99999999999888653
No 33
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=4e-21 Score=146.22 Aligned_cols=179 Identities=21% Similarity=0.212 Sum_probs=149.9
Q ss_pred cCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCC
Q 023642 93 YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR 169 (279)
Q Consensus 93 ~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 169 (279)
|..+|.| .+.|+++.+|+........+..+|...|..++.+.|+..|++++.|..+.+||+.+|+..++ +++|.
T Consensus 25 yN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr---~rgH~ 101 (307)
T KOG0316|consen 25 YNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRR---FRGHL 101 (307)
T ss_pred EccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeee---ccccc
Confidence 4556665 57899999999998888888999999999999999999999999999999999999988876 68999
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecccccccee---EEeeC------CC---------------CC
Q 023642 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL---DFSAA------DD---------------GG 225 (279)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~------~~---------------~~ 225 (279)
+.|..++|+.+...+++|+.|.++++||.+.....+++.......++ ....| .+ +-
T Consensus 102 aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy 181 (307)
T KOG0316|consen 102 AQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDY 181 (307)
T ss_pred ceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhh
Confidence 99999999999999999999999999999987766555444333322 11111 11 11
Q ss_pred ccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeE
Q 023642 226 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIAL 274 (279)
Q Consensus 226 ~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~ 274 (279)
...+|++++|++|++.++.++.|+++++.|-.+|+.++.+.||...-..
T Consensus 182 ~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eyk 230 (307)
T KOG0316|consen 182 FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYK 230 (307)
T ss_pred cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceee
Confidence 2458999999999999999999999999999999999999999875433
No 34
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=3.7e-21 Score=164.02 Aligned_cols=159 Identities=16% Similarity=0.228 Sum_probs=139.7
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
++.|..+.+.++.+.+....+++|.+-|.+++.+|...++++++.|-.|++||.+.++.... .+.+|...|.+++|.|
T Consensus 73 GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~q--tfeGH~HyVMqv~fnP 150 (794)
T KOG0276|consen 73 GSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQ--TFEGHEHYVMQVAFNP 150 (794)
T ss_pred ecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeee--EEcCcceEEEEEEecC
Confidence 56777888899999999999999999999999999999999999999999999998876555 3578888999999999
Q ss_pred -CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEec--CCCEEEEecCCCeEEEEEC
Q 023642 180 -DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDL 256 (279)
Q Consensus 180 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~g~~l~t~s~d~~i~vwd~ 256 (279)
|.+.+++++.|++|++|.+....... ++.+ |...|+|+.|-+ |.++|+||+.|.+|+|||.
T Consensus 151 kD~ntFaS~sLDrTVKVWslgs~~~nf-----------Tl~g-----HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDy 214 (794)
T KOG0276|consen 151 KDPNTFASASLDRTVKVWSLGSPHPNF-----------TLEG-----HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDY 214 (794)
T ss_pred CCccceeeeeccccEEEEEcCCCCCce-----------eeec-----cccCcceEEeccCCCcceEEecCCCceEEEeec
Confidence 67899999999999999997655432 2333 566999999976 4579999999999999999
Q ss_pred CCCeEEEEEeCCCcceeEEE
Q 023642 257 EANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 257 ~~~~~~~~~~~h~~~v~~v~ 276 (279)
.+..|++++.||.+.|+.+.
T Consensus 215 Qtk~CV~TLeGHt~Nvs~v~ 234 (794)
T KOG0276|consen 215 QTKSCVQTLEGHTNNVSFVF 234 (794)
T ss_pred chHHHHHHhhcccccceEEE
Confidence 99999999999999998875
No 35
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.2e-20 Score=143.60 Aligned_cols=159 Identities=14% Similarity=0.169 Sum_probs=132.9
Q ss_pred eccccceEeeeeecCCCC-ceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEE
Q 023642 100 SAADCCHMLSRYLPVNGP-WPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL 177 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~-~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (279)
.+.|+++.+|++-....| ..++.|...|.++.|++ ++..+++++.|++|++|+...+..+.+ +.+|...|...+|
T Consensus 79 a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~T---f~gh~~~Iy~a~~ 155 (311)
T KOG0277|consen 79 ASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQT---FNGHNSCIYQAAF 155 (311)
T ss_pred EecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEe---ecCCccEEEEEec
Confidence 567899999997665555 45899999999999999 666788889999999999998877665 6799999999999
Q ss_pred CC-CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEec-CCCEEEEecCCCeEEEEE
Q 023642 178 SP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 178 sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~t~s~d~~i~vwd 255 (279)
+| .++.+++++.|+++++||++.......... |...|.++.|+. +...|+||+.|+.|+.||
T Consensus 156 sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a----------------h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wD 219 (311)
T KOG0277|consen 156 SPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA----------------HNSEILCCDWSKYNHNVLATGGVDNLVRGWD 219 (311)
T ss_pred CCCCCCeEEEccCCceEEEEEecCCCceeEEEe----------------ccceeEeecccccCCcEEEecCCCceEEEEe
Confidence 99 678999999999999999987543211111 666899999986 567899999999999999
Q ss_pred CCC-CeEEEEEeCCCcceeEEEe
Q 023642 256 LEA-NKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 256 ~~~-~~~~~~~~~h~~~v~~v~~ 277 (279)
++. ..++..+.+|.-.|+.|..
T Consensus 220 ir~~r~pl~eL~gh~~AVRkvk~ 242 (311)
T KOG0277|consen 220 IRNLRTPLFELNGHGLAVRKVKF 242 (311)
T ss_pred hhhccccceeecCCceEEEEEec
Confidence 987 5688999999999888764
No 36
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.85 E-value=2.3e-20 Score=161.75 Aligned_cols=177 Identities=15% Similarity=0.191 Sum_probs=140.4
Q ss_pred hhhccccCcc-----CCCCee---eccccceEeeeeecCCCC----ceeeCCCCCeEEEEECCCC-CEEEEEeCCCcEEE
Q 023642 84 KMLAGREGNY-----SGRGRF---SAADCCHMLSRYLPVNGP----WPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRI 150 (279)
Q Consensus 84 ~~~~~~~~~~-----~~~~~~---~~~d~~~~~~~~~~~~~~----~~l~~h~~~V~~~~~spd~-~~l~s~~~d~~i~i 150 (279)
+++.||+..+ ...|.+ .+.|+++++|++...... ....+|+..|.+++++..+ .+|+++|.|.++++
T Consensus 359 ~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~ 438 (775)
T KOG0319|consen 359 QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKL 438 (775)
T ss_pred EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEE
Confidence 3567776643 233433 577999999999443332 2358999999999998744 68899999999999
Q ss_pred EEcCCCeEEee------eeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCC
Q 023642 151 YDVERGWKIQK------DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG 224 (279)
Q Consensus 151 wd~~~~~~~~~------~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (279)
|++...+.... ......|...|.+++.+|+..+||+||.|++.+||++........ +++
T Consensus 439 W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~v-----------LsG---- 503 (775)
T KOG0319|consen 439 WDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGV-----------LSG---- 503 (775)
T ss_pred ecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEE-----------eeC----
Confidence 99986321111 113367888999999999999999999999999999996665432 333
Q ss_pred CccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 225 ~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
|+..|+++.|+|..+.++|+|.|.+|+||.+.+..|+++|.||...|.-+.
T Consensus 504 -H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~ 554 (775)
T KOG0319|consen 504 -HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRAS 554 (775)
T ss_pred -CccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeee
Confidence 666999999999999999999999999999999999999999999886543
No 37
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.85 E-value=3e-20 Score=161.50 Aligned_cols=159 Identities=23% Similarity=0.268 Sum_probs=133.4
Q ss_pred ccCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeee-----
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI----- 163 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~----- 163 (279)
.++|+|++ ++.|+++.+|+....-...++..|++.|+.+.|+..|+.+++++-||+|+.||+......+.+.
T Consensus 357 ~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~ 436 (893)
T KOG0291|consen 357 AYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI 436 (893)
T ss_pred EECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCce
Confidence 47889887 5679999999988777778899999999999999999999999999999999997653332211
Q ss_pred ------------------------------------eccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCC--ceee
Q 023642 164 ------------------------------------LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG--TMES 205 (279)
Q Consensus 164 ------------------------------------~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~--~~~~ 205 (279)
.+.+|++||.+++|+|++..|++++.|++|++||+-.. +...
T Consensus 437 QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEt 516 (893)
T KOG0291|consen 437 QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVET 516 (893)
T ss_pred eeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeee
Confidence 23499999999999999999999999999999998654 3322
Q ss_pred eeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCC
Q 023642 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h 268 (279)
+. +...+..++|+|||+.|+++..||.|.+||+..+..+.++.|-
T Consensus 517 l~------------------i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idgr 561 (893)
T KOG0291|consen 517 LE------------------IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGR 561 (893)
T ss_pred Ee------------------eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccch
Confidence 21 3348999999999999999999999999999988877777653
No 38
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.85 E-value=2.2e-19 Score=150.49 Aligned_cols=188 Identities=21% Similarity=0.221 Sum_probs=144.1
Q ss_pred CccCCCCee---eccccceEeeeeecCCCCceee---CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeee-
Q 023642 91 GNYSGRGRF---SAADCCHMLSRYLPVNGPWPVD---QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI- 163 (279)
Q Consensus 91 ~~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~---~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~- 163 (279)
..|+|+|.+ .+.|+.+.+++-...+....+. +|.+.|++++|+||++.|++++.|.+++|||+.+..++.+..
T Consensus 196 VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~ 275 (603)
T KOG0318|consen 196 VRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPM 275 (603)
T ss_pred EEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeec
Confidence 357888876 5678899888877666666666 899999999999999999999999999999998764443321
Q ss_pred ---------------------------------------eccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCcee
Q 023642 164 ---------------------------------------LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (279)
Q Consensus 164 ---------------------------------------~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~ 204 (279)
...+|...|+++..+||+.+|++|+.||.|.-||..++..-
T Consensus 276 ~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 276 GSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred CCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 12388889999999999999999999999999999876653
Q ss_pred eeec--cccc-------c-ceeEEeeCCC---------------------------------------------------
Q 023642 205 SLAN--VTEI-------H-DGLDFSAADD--------------------------------------------------- 223 (279)
Q Consensus 205 ~~~~--~~~~-------~-~~~~~~~~~~--------------------------------------------------- 223 (279)
.+.. .... . ..+...+-.+
T Consensus 356 ~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~ 435 (603)
T KOG0318|consen 356 RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQT 435 (603)
T ss_pred ccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCC
Confidence 2210 0000 0 0000000000
Q ss_pred ------------------------------------------------CCccccEEEEEEecCCCEEEEecCCCeEEEEE
Q 023642 224 ------------------------------------------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 224 ------------------------------------------------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd 255 (279)
..|.+.|++++||||+.+|+++...+.+.+||
T Consensus 436 ~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd 515 (603)
T KOG0318|consen 436 KVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYD 515 (603)
T ss_pred cceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEE
Confidence 34889999999999999999999999999999
Q ss_pred CCCCeEE-EEEeCCCcceeEEEee
Q 023642 256 LEANKLS-LRILAHTVNIALWITC 278 (279)
Q Consensus 256 ~~~~~~~-~~~~~h~~~v~~v~~~ 278 (279)
+.+.+.. ..+.-|+..|+++.++
T Consensus 516 ~~s~~~~~~~w~FHtakI~~~aWs 539 (603)
T KOG0318|consen 516 VASREVKTNRWAFHTAKINCVAWS 539 (603)
T ss_pred cccCceecceeeeeeeeEEEEEeC
Confidence 9988763 3344599999999874
No 39
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=4.4e-20 Score=148.29 Aligned_cols=175 Identities=12% Similarity=0.161 Sum_probs=141.3
Q ss_pred hhhccccCc-----cCCCCee---eccccceEeeeeecC-CCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 023642 84 KMLAGREGN-----YSGRGRF---SAADCCHMLSRYLPV-NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVE 154 (279)
Q Consensus 84 ~~~~~~~~~-----~~~~~~~---~~~d~~~~~~~~~~~-~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~ 154 (279)
..++||+.+ +...|++ .+.|-...+|++... +....+.+|...|.++.|-|-|.++++++.|.+|+.|++.
T Consensus 144 ~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~ 223 (406)
T KOG0295|consen 144 RSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD 223 (406)
T ss_pred hhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecc
Confidence 456666664 3334443 233444666766553 2234478999999999999999999999999999999999
Q ss_pred CCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEE
Q 023642 155 RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK 234 (279)
Q Consensus 155 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 234 (279)
++.++.. +.+|...|.-++.+.||..+++++.|.++++|-+.++++....+. |..+|-+++
T Consensus 224 tg~cv~t---~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~----------------hEh~vEci~ 284 (406)
T KOG0295|consen 224 TGYCVKT---FPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELRE----------------HEHPVECIA 284 (406)
T ss_pred cceeEEe---ccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhc----------------cccceEEEE
Confidence 9998876 678988999999999999999999999999999999876433221 555788888
Q ss_pred Eec---------------CCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 235 FST---------------DGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 235 ~sp---------------~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
|-| .++++++++.|++|++||+.+|.++.++.||..+|..+..
T Consensus 285 wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af 342 (406)
T KOG0295|consen 285 WAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAF 342 (406)
T ss_pred ecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEE
Confidence 866 1368999999999999999999999999999999998764
No 40
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=3.1e-20 Score=158.45 Aligned_cols=159 Identities=11% Similarity=0.084 Sum_probs=133.0
Q ss_pred eccccceEeeeeecC-CCCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEE
Q 023642 100 SAADCCHMLSRYLPV-NGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL 177 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~-~~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (279)
++.|-.+.+|++... ...++++||+.-|++++|+| |.+.|++++-|++|++|.+.+..+..+ +.+|...|.++.+
T Consensus 115 sSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfT---l~gHekGVN~Vdy 191 (794)
T KOG0276|consen 115 SSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFT---LEGHEKGVNCVDY 191 (794)
T ss_pred cCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCcee---eeccccCcceEEe
Confidence 456667788887653 44577999999999999999 889999999999999999988755443 5699999999999
Q ss_pred CC--CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEE
Q 023642 178 SP--DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 178 sp--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd 255 (279)
-| |..+|++|+.|.+++|||..+..+.... .||..-|..+.|+|.-++++||++||+++||+
T Consensus 192 y~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL----------------eGHt~Nvs~v~fhp~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 192 YTGGDKPYLISGADDLTIKVWDYQTKSCVQTL----------------EGHTNNVSFVFFHPELPIIISGSEDGTVRIWN 255 (794)
T ss_pred ccCCCcceEEecCCCceEEEeecchHHHHHHh----------------hcccccceEEEecCCCcEEEEecCCccEEEec
Confidence 87 4479999999999999999998874322 14777999999999999999999999999999
Q ss_pred CCCCeEEEEEeCCCcceeEEEe
Q 023642 256 LEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 256 ~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
..|-+...++.-.-..|+|+.+
T Consensus 256 s~Ty~lE~tLn~gleRvW~I~~ 277 (794)
T KOG0276|consen 256 SKTYKLEKTLNYGLERVWCIAA 277 (794)
T ss_pred CcceehhhhhhcCCceEEEEee
Confidence 9987777777666667776653
No 41
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.84 E-value=8.6e-20 Score=147.37 Aligned_cols=176 Identities=16% Similarity=0.188 Sum_probs=135.9
Q ss_pred eccccceEeeeeecCCCCce----eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-----e-------------
Q 023642 100 SAADCCHMLSRYLPVNGPWP----VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-----W------------- 157 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~----l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~-----~------------- 157 (279)
.+.|+++.+|.+........ -.||...|-+++..++|..+++|+.|..|+||+.... +
T Consensus 165 as~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~ 244 (423)
T KOG0313|consen 165 ASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKRE 244 (423)
T ss_pred ecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhh
Confidence 57899999999887655422 3599999999999999999999999999999993211 0
Q ss_pred ----EEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEee--------CCC--
Q 023642 158 ----KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSA--------ADD-- 223 (279)
Q Consensus 158 ----~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--------~~~-- 223 (279)
.......+.+|..+|.++.|++ ...+++++.|.+|+.||+.++..............+.+.+ ..+
T Consensus 245 ~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~ 323 (423)
T KOG0313|consen 245 KEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRH 323 (423)
T ss_pred hcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCc
Confidence 0012245679999999999988 7789999999999999999888743332222111111111 111
Q ss_pred ------------------CCccccEEEEEEecCCC-EEEEecCCCeEEEEECCCCe-EEEEEeCCCcceeEEE
Q 023642 224 ------------------GGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANK-LSLRILAHTVNIALWI 276 (279)
Q Consensus 224 ------------------~~~~~~v~~~~~sp~g~-~l~t~s~d~~i~vwd~~~~~-~~~~~~~h~~~v~~v~ 276 (279)
-+|+.+|.++.|+|... +|++++.|+++++||+++.+ ++..+.+|.+.|-++-
T Consensus 324 irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vd 396 (423)
T KOG0313|consen 324 IRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVD 396 (423)
T ss_pred eeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEe
Confidence 56889999999999765 57899999999999999877 9999999999988764
No 42
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.84 E-value=9.2e-21 Score=151.63 Aligned_cols=155 Identities=19% Similarity=0.188 Sum_probs=126.0
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
+..|.++.+|+........++.||++.|.|+.| +.+.+++|+.|.+|++||..+++++.. +-+|...|..+.|+
T Consensus 213 GlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~t---lihHceaVLhlrf~- 286 (499)
T KOG0281|consen 213 GLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNT---LIHHCEAVLHLRFS- 286 (499)
T ss_pred ccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhH---HhhhcceeEEEEEe-
Confidence 456889999998888888889999999999999 457999999999999999999998876 45788889999996
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
..++++++.|.++.+||+.......+..... ||...|+.+.|+ .+++++++.|.+|++|++.++
T Consensus 287 -ng~mvtcSkDrsiaVWdm~sps~it~rrVLv-------------GHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~ 350 (499)
T KOG0281|consen 287 -NGYMVTCSKDRSIAVWDMASPTDITLRRVLV-------------GHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTC 350 (499)
T ss_pred -CCEEEEecCCceeEEEeccCchHHHHHHHHh-------------hhhhheeeeccc--cceEEEecCCceEEEEeccce
Confidence 4599999999999999998765433333322 366678877775 558888888888888888888
Q ss_pred eEEEEEeCCCcceeEEE
Q 023642 260 KLSLRILAHTVNIALWI 276 (279)
Q Consensus 260 ~~~~~~~~h~~~v~~v~ 276 (279)
+++.++.||+..|.|+.
T Consensus 351 efvRtl~gHkRGIAClQ 367 (499)
T KOG0281|consen 351 EFVRTLNGHKRGIACLQ 367 (499)
T ss_pred eeehhhhcccccceehh
Confidence 88888888888776653
No 43
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.84 E-value=4e-21 Score=153.72 Aligned_cols=171 Identities=19% Similarity=0.208 Sum_probs=140.7
Q ss_pred hhhhccccCccC---CCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 023642 83 VKMLAGREGNYS---GRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG 156 (279)
Q Consensus 83 ~~~~~~~~~~~~---~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~ 156 (279)
.+.+.||.+.+. -+.++ ++.|.++++|++.+.+...++.+|.+.|..+.|+. .++++++.|.++.+||+...
T Consensus 230 ~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sp 307 (499)
T KOG0281|consen 230 LKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASP 307 (499)
T ss_pred HHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCc
Confidence 356777776531 11122 57899999999999998899999999999999964 79999999999999999876
Q ss_pred eEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEe
Q 023642 157 WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS 236 (279)
Q Consensus 157 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 236 (279)
..+.....+.+|...|..+.| |.++|++++.|.+|++|++.+++...... +|.-.|.|+.+
T Consensus 308 s~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~----------------gHkRGIAClQY- 368 (499)
T KOG0281|consen 308 TDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLN----------------GHKRGIACLQY- 368 (499)
T ss_pred hHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhh----------------cccccceehhc-
Confidence 543333456799999999999 45699999999999999999988754322 26668888776
Q ss_pred cCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEE
Q 023642 237 TDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALW 275 (279)
Q Consensus 237 p~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v 275 (279)
.|+++++|+.|.+|++||+..|.++..++||..-|.++
T Consensus 369 -r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRci 406 (499)
T KOG0281|consen 369 -RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 406 (499)
T ss_pred -cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhhe
Confidence 48999999999999999999999999999999888775
No 44
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.2e-19 Score=149.88 Aligned_cols=184 Identities=16% Similarity=0.172 Sum_probs=144.7
Q ss_pred cCCCCee--ec-cccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC------CeEEeeee
Q 023642 93 YSGRGRF--SA-ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER------GWKIQKDI 163 (279)
Q Consensus 93 ~~~~~~~--~~-~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~------~~~~~~~~ 163 (279)
.++.|.| ++ ..+.+.+|.+-.+....++.+|-..|+++.|+-||.+|++|++||.|.+|++-. ........
T Consensus 89 s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~ 168 (476)
T KOG0646|consen 89 SSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLH 168 (476)
T ss_pred cCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcccee
Confidence 4556665 34 568899999988887788899999999999999999999999999999998732 11222334
Q ss_pred eccCCCcceEEEEECCCC--CEEEEEeCCCeEEEEECCCCceeeeeccccccceeE--------EeeCCC----------
Q 023642 164 LAKSLRWTVTDTSLSPDQ--RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLD--------FSAADD---------- 223 (279)
Q Consensus 164 ~~~~~~~~v~~~~~sp~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~--------~~~~~~---------- 223 (279)
.+..|.-+|+++...+-| ..|+++|.|.++++||+..+..............+. |.+...
T Consensus 169 ~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~ 248 (476)
T KOG0646|consen 169 IFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFK 248 (476)
T ss_pred eeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhc
Confidence 467899999999987754 579999999999999999988754444333322221 111111
Q ss_pred -----------------------CCccc--cEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 224 -----------------------GGYSF--GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 224 -----------------------~~~~~--~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
.||.+ .|+|++.+-||..|++|+.||.|+|||+.+.++++++....++|+.+.
T Consensus 249 ~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~ 326 (476)
T KOG0646|consen 249 LSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQ 326 (476)
T ss_pred CCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeE
Confidence 56777 999999999999999999999999999999999999887777887664
No 45
>PTZ00421 coronin; Provisional
Probab=99.83 E-value=1.7e-18 Score=152.26 Aligned_cols=174 Identities=17% Similarity=0.155 Sum_probs=126.0
Q ss_pred eccccceEeeeeecCC-------CCceeeCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcc
Q 023642 100 SAADCCHMLSRYLPVN-------GPWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWT 171 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~-------~~~~l~~h~~~V~~~~~spd~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 171 (279)
++.|+.+.+|++.... ....+.+|...|.+++|+|++ ++|++|+.|++|+|||+.++..... +..|...
T Consensus 94 gS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~---l~~h~~~ 170 (493)
T PTZ00421 94 ASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEV---IKCHSDQ 170 (493)
T ss_pred EeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEE---EcCCCCc
Confidence 5678999999986532 234578999999999999975 6999999999999999999866543 4678889
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecc-ccc---------cceeEEe-eC---CC--------------
Q 023642 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV-TEI---------HDGLDFS-AA---DD-------------- 223 (279)
Q Consensus 172 v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~---------~~~~~~~-~~---~~-------------- 223 (279)
|.+++|+|+|.+|++++.|++|++||+++++....... ... .....+. +. .+
T Consensus 171 V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p 250 (493)
T PTZ00421 171 ITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASP 250 (493)
T ss_pred eEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCc
Confidence 99999999999999999999999999998775322211 000 0011111 10 00
Q ss_pred -----CCccccEEEEEEecCCCEEEEec-CCCeEEEEECCCCeEEEEEeC-CCcceeEEE
Q 023642 224 -----GGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILA-HTVNIALWI 276 (279)
Q Consensus 224 -----~~~~~~v~~~~~sp~g~~l~t~s-~d~~i~vwd~~~~~~~~~~~~-h~~~v~~v~ 276 (279)
..+...+....|++++.+|++++ .|+.|++||+.+++++..+.. +..++..+.
T Consensus 251 ~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~ 310 (493)
T PTZ00421 251 YSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLC 310 (493)
T ss_pred eeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceE
Confidence 01123455567899999998887 599999999999988776654 333444443
No 46
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.83 E-value=3.7e-21 Score=159.43 Aligned_cols=145 Identities=20% Similarity=0.224 Sum_probs=127.5
Q ss_pred ecCCCCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCC-CeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC
Q 023642 112 LPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM 189 (279)
Q Consensus 112 ~~~~~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 189 (279)
.|......+.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +.+++. +.+|..+|.+++|+++|..+++++.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrt---f~gH~k~Vrd~~~s~~g~~fLS~sf 278 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRT---FKGHRKPVRDASFNNCGTSFLSASF 278 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehh---hhcchhhhhhhhccccCCeeeeeec
Confidence 35555567899999999999999 899999999999999999876 666665 6799999999999999999999999
Q ss_pred CCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCC-CEEEEecCCCeEEEEECCCCeEEEEEeCC
Q 023642 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 190 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~t~s~d~~i~vwd~~~~~~~~~~~~h 268 (279)
|+.+++||+++|++....... ..++|+.|.||+ +.+++|+.|+.|+.||+++++.++.+..|
T Consensus 279 D~~lKlwDtETG~~~~~f~~~-----------------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h 341 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLSRFHLD-----------------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRH 341 (503)
T ss_pred ceeeeeeccccceEEEEEecC-----------------CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhh
Confidence 999999999999986543321 278999999998 78889999999999999999999999999
Q ss_pred CcceeEEE
Q 023642 269 TVNIALWI 276 (279)
Q Consensus 269 ~~~v~~v~ 276 (279)
-+.|+.+.
T Consensus 342 Lg~i~~i~ 349 (503)
T KOG0282|consen 342 LGAILDIT 349 (503)
T ss_pred hhheeeeE
Confidence 98888765
No 47
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.83 E-value=5.9e-19 Score=136.68 Aligned_cols=161 Identities=16% Similarity=0.147 Sum_probs=128.0
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeec--------------
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA-------------- 165 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------------- 165 (279)
.+.|...-+|.-.+.+..-++.||++.|+|++.+-+.+.+++|+.|.++++||+.+|+++......
T Consensus 28 caKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~ 107 (327)
T KOG0643|consen 28 CAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNL 107 (327)
T ss_pred ecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcE
Confidence 356788889998888888889999999999999999999999999999999999999766532110
Q ss_pred ------------------------------------cCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecc
Q 023642 166 ------------------------------------KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV 209 (279)
Q Consensus 166 ------------------------------------~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 209 (279)
..+.+.++.+-|.|-+.+|++|..||.|.+||+++|.... ..
T Consensus 108 ~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v--~s 185 (327)
T KOG0643|consen 108 ILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELV--DS 185 (327)
T ss_pred EEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceee--ec
Confidence 0223456677777777788888888888888888776521 11
Q ss_pred ccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 210 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
. .-|...|+.+.|+||..+++|++.|.+.++||+++-++++++.. ..+||+.+
T Consensus 186 ~-------------~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aa 238 (327)
T KOG0643|consen 186 D-------------EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAA 238 (327)
T ss_pred h-------------hhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-ccccccee
Confidence 1 12777999999999999999999999999999999999999874 45666543
No 48
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.83 E-value=4.3e-19 Score=145.62 Aligned_cols=160 Identities=16% Similarity=0.125 Sum_probs=133.9
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.+.|..+.+|..-....+..+..|.++|+.+..+|.|.+|++++.|+...+.|++++..+...... ...-.+++.+|||
T Consensus 279 aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-~s~v~~ts~~fHp 357 (506)
T KOG0289|consen 279 ASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE-TSDVEYTSAAFHP 357 (506)
T ss_pred cCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec-cccceeEEeeEcC
Confidence 466778888988777788889999999999999999999999999999999999999877654322 2334589999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
||..|.+|..|+.++|||+.++..... |. +|.++|..++|+.+|-||++++.|+.|++||++..
T Consensus 358 DgLifgtgt~d~~vkiwdlks~~~~a~-----------Fp-----ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 358 DGLIFGTGTPDGVVKIWDLKSQTNVAK-----------FP-----GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL 421 (506)
T ss_pred CceEEeccCCCceEEEEEcCCcccccc-----------CC-----CCCCceeEEEeccCceEEEEEecCCeEEEEEehhh
Confidence 999999999999999999998775321 11 37889999999999999999999999999999998
Q ss_pred eEEEEEeCCC-cceeEEE
Q 023642 260 KLSLRILAHT-VNIALWI 276 (279)
Q Consensus 260 ~~~~~~~~h~-~~v~~v~ 276 (279)
+..+++.-.. ..|+++.
T Consensus 422 ~n~kt~~l~~~~~v~s~~ 439 (506)
T KOG0289|consen 422 KNFKTIQLDEKKEVNSLS 439 (506)
T ss_pred cccceeeccccccceeEE
Confidence 8888887432 3555543
No 49
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3.4e-19 Score=157.45 Aligned_cols=180 Identities=16% Similarity=0.149 Sum_probs=143.3
Q ss_pred cCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCC
Q 023642 93 YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR 169 (279)
Q Consensus 93 ~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 169 (279)
|.+.+.+ ++.|-.+.+|++.......++.||.+.|..+.|++.-.+++++|.|.+|+||+..+++++.. +.+|.
T Consensus 59 FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iav---ltGHn 135 (1202)
T KOG0292|consen 59 FHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAV---LTGHN 135 (1202)
T ss_pred ecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEE---EecCc
Confidence 4444443 45677888999998888889999999999999999999999999999999999999988765 57888
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecc--------------------------ccccc----eeEEe
Q 023642 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV--------------------------TEIHD----GLDFS 219 (279)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--------------------------~~~~~----~~~~~ 219 (279)
..|.+..|+|....++++|.|-+|++||+.+-+....... .++|+ .+.|.
T Consensus 136 HYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh 215 (1202)
T KOG0292|consen 136 HYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH 215 (1202)
T ss_pred eEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec
Confidence 8999999999999999999999999999975443221111 01111 11121
Q ss_pred eC--------CC-------------------CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcce
Q 023642 220 AA--------DD-------------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNI 272 (279)
Q Consensus 220 ~~--------~~-------------------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v 272 (279)
++ .+ .||...|.++-|+|....+++.|+|++|+|||+...+.+++++...+.-
T Consensus 216 pTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRF 295 (1202)
T KOG0292|consen 216 PTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRF 295 (1202)
T ss_pred CCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeE
Confidence 11 11 7899999999999999999999999999999999999999997555544
Q ss_pred eEE
Q 023642 273 ALW 275 (279)
Q Consensus 273 ~~v 275 (279)
+.+
T Consensus 296 W~l 298 (1202)
T KOG0292|consen 296 WIL 298 (1202)
T ss_pred EEE
Confidence 444
No 50
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.82 E-value=7.1e-19 Score=135.82 Aligned_cols=174 Identities=13% Similarity=0.122 Sum_probs=138.1
Q ss_pred eccccceEeeeeecCCC--CceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEE
Q 023642 100 SAADCCHMLSRYLPVNG--PWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS 176 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~--~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 176 (279)
++.|+++.+|++..... .....+|.+.|-.++|+| ...+|++++.|.+|++||++++++...+. ..+.-.-+.
T Consensus 38 gs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~----~~~eni~i~ 113 (313)
T KOG1407|consen 38 GSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIE----TKGENINIT 113 (313)
T ss_pred cccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEee----ccCcceEEE
Confidence 56788999999887643 345789999999999998 67799999999999999999998877632 222345689
Q ss_pred ECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCC-------------------------CCccccEE
Q 023642 177 LSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD-------------------------GGYSFGIF 231 (279)
Q Consensus 177 ~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~v~ 231 (279)
|+|+|.+++.++.|..|...|.++.+.............+.+...++ +.|.....
T Consensus 114 wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCi 193 (313)
T KOG1407|consen 114 WSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCI 193 (313)
T ss_pred EcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceE
Confidence 99999999999999999999999877643333322222222221111 56888899
Q ss_pred EEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 232 SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 232 ~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
|+.|+|+|++||+|+.|..+.+||+..--|+..+..+.-+|+.+-.
T Consensus 194 cI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSF 239 (313)
T KOG1407|consen 194 CIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSF 239 (313)
T ss_pred EEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEe
Confidence 9999999999999999999999999988889999888888887754
No 51
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.82 E-value=3.8e-19 Score=139.74 Aligned_cols=130 Identities=21% Similarity=0.233 Sum_probs=108.6
Q ss_pred eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 023642 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~ 198 (279)
.+.+|.+.|+.+.|+|+|.+|++|+.|..|.+|+...... ......+|.+.|..+.|.+|++.|++++.|++++.||+
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce--N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE--NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc--ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 4789999999999999999999999999999999764321 22335799999999999999999999999999999999
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEE-EecCCCeEEEEECCCCeEEEEEe
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
++|+.....+ +|..-|+.+.-+.-|..|+ +++.|+++++||+++..++++++
T Consensus 120 ~tG~~~rk~k----------------~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~ 172 (338)
T KOG0265|consen 120 ETGKRIRKHK----------------GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE 172 (338)
T ss_pred ccceeeehhc----------------cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc
Confidence 9999854322 2666888888555566555 77889999999999888877774
No 52
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.82 E-value=1.7e-18 Score=139.29 Aligned_cols=148 Identities=18% Similarity=0.175 Sum_probs=127.2
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
++.|+...+|+..+......+.+|.+.|+++.||.||.+||+|+-+|.|+||...++.....+. ..-..+.=+.|+|
T Consensus 82 GGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~---~e~~dieWl~WHp 158 (399)
T KOG0296|consen 82 GGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD---QEVEDIEWLKWHP 158 (399)
T ss_pred cCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee---cccCceEEEEecc
Confidence 4678888999998888777799999999999999999999999999999999999986655432 2223477789999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
.+..|+.|+.||.+.+|.+.++....+ +. ||..++++=.|.|+|+.++++..|++|++||.+++
T Consensus 159 ~a~illAG~~DGsvWmw~ip~~~~~kv-----------~~-----Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg 222 (399)
T KOG0296|consen 159 RAHILLAGSTDGSVWMWQIPSQALCKV-----------MS-----GHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTG 222 (399)
T ss_pred cccEEEeecCCCcEEEEECCCcceeeE-----------ec-----CCCCCcccccccCCCceEEEEecCceEEEEecCCC
Confidence 999999999999999999988543222 22 36679999999999999999999999999999999
Q ss_pred eEEEEEe
Q 023642 260 KLSLRIL 266 (279)
Q Consensus 260 ~~~~~~~ 266 (279)
+++.++.
T Consensus 223 ~p~~~~~ 229 (399)
T KOG0296|consen 223 QPLHKIT 229 (399)
T ss_pred ceeEEec
Confidence 9999987
No 53
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=2.4e-18 Score=136.16 Aligned_cols=175 Identities=15% Similarity=0.129 Sum_probs=139.8
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCC--EEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEE
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGS--LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL 177 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (279)
++.|.++.++++........+..|.+.|+++.|.|.-. .|++|+.||.|.+|+.....++.. ++.|.+.|+.++.
T Consensus 59 GssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~s---lK~H~~~Vt~lsi 135 (362)
T KOG0294|consen 59 GSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKS---LKAHKGQVTDLSI 135 (362)
T ss_pred cCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeee---ecccccccceeEe
Confidence 56788999998887777778999999999999999765 899999999999999988765554 6789889999999
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCC----------------------------------
Q 023642 178 SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD---------------------------------- 223 (279)
Q Consensus 178 sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 223 (279)
+|.+++.++.+.|+.+++||+-+|+.............+.|.+.++
T Consensus 136 HPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~ 215 (362)
T KOG0294|consen 136 HPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCAT 215 (362)
T ss_pred cCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeee
Confidence 9999999999999999999999888765555544444445554443
Q ss_pred ------------------------------CCccccEEEEEE--ecCCCEEEEecCCCeEEEEECCCC-----eEEEEEe
Q 023642 224 ------------------------------GGYSFGIFSLKF--STDGRELVAGSSDDCIYVYDLEAN-----KLSLRIL 266 (279)
Q Consensus 224 ------------------------------~~~~~~v~~~~~--sp~g~~l~t~s~d~~i~vwd~~~~-----~~~~~~~ 266 (279)
.+|...|-++.+ .|++.+|+|+|.||.|+|||++.. +.+..+.
T Consensus 216 ~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n 295 (362)
T KOG0294|consen 216 FLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELN 295 (362)
T ss_pred ecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEee
Confidence 458888888885 467889999999999999999865 3444444
Q ss_pred CCCcceeEEEee
Q 023642 267 AHTVNIALWITC 278 (279)
Q Consensus 267 ~h~~~v~~v~~~ 278 (279)
- ...++|+..|
T Consensus 296 ~-~~RltCl~~~ 306 (362)
T KOG0294|consen 296 T-NVRLTCLRVK 306 (362)
T ss_pred c-CCccceeeeh
Confidence 2 4555665544
No 54
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.81 E-value=8e-18 Score=137.81 Aligned_cols=159 Identities=23% Similarity=0.246 Sum_probs=134.2
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.+.++.+.+|++........+..|...+..+.|+|+++++++++.|+.|++||+..++.... +..|...+.++.|+|
T Consensus 27 ~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~---~~~~~~~i~~~~~~~ 103 (289)
T cd00200 27 GSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT---LTGHTSYVSSVAFSP 103 (289)
T ss_pred eecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEE---EeccCCcEEEEEEcC
Confidence 34578889999887766677889999999999999999999999999999999998755443 347777899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
+++++++++.|+.+++||+.+++...... .|...+.+++|+|++.++++++.++.|++||++++
T Consensus 104 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----------------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~ 167 (289)
T cd00200 104 DGRILSSSSRDKTIKVWDVETGKCLTTLR----------------GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG 167 (289)
T ss_pred CCCEEEEecCCCeEEEEECCCcEEEEEec----------------cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc
Confidence 98899988889999999999766533221 14558999999999999998888999999999999
Q ss_pred eEEEEEeCCCcceeEEEe
Q 023642 260 KLSLRILAHTVNIALWIT 277 (279)
Q Consensus 260 ~~~~~~~~h~~~v~~v~~ 277 (279)
+++..+..|...|.++..
T Consensus 168 ~~~~~~~~~~~~i~~~~~ 185 (289)
T cd00200 168 KCVATLTGHTGEVNSVAF 185 (289)
T ss_pred ccceeEecCccccceEEE
Confidence 999999999888887654
No 55
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=6.7e-19 Score=154.83 Aligned_cols=125 Identities=18% Similarity=0.224 Sum_probs=110.7
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC-CCCEEEEEeCCCeEEEEEC
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDV 198 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~ 198 (279)
+.||.+.|..+.||.+ ++|++++.|.+||+|++....|+.. -.|...|++++|+| |.+|+++|+.|+.|+||++
T Consensus 365 f~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~----F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI 439 (712)
T KOG0283|consen 365 FKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKV----FSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSI 439 (712)
T ss_pred hhccchhheecccccC-CeeEeccccccEEeecCCCcceeeE----EecCCeeEEEEecccCCCcEeecccccceEEeec
Confidence 5799999999999975 6899999999999999999988875 37888999999999 8899999999999999999
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
...++....... .-|++++|.|||++.+.|+.+|..++|+....+....+.
T Consensus 440 ~d~~Vv~W~Dl~-----------------~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 440 SDKKVVDWNDLR-----------------DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred CcCeeEeehhhh-----------------hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence 998876554432 279999999999999999999999999998877666554
No 56
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.81 E-value=2.3e-18 Score=138.52 Aligned_cols=139 Identities=19% Similarity=0.210 Sum_probs=122.6
Q ss_pred CceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 023642 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (279)
Q Consensus 117 ~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~ 196 (279)
...+..|++.|++++.+|+.+++++|+.|..-.+|++.++.... .+.+|+..|+++.|+-||.+||+|+.+|.|+||
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 34688999999999999999999999999999999999997544 367999999999999999999999999999999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeE
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIAL 274 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~ 274 (279)
+..++........ --..+.-+.|+|.+.+|+.|+.||.+.+|.+.++...+.+.||..++++
T Consensus 134 ~~stg~~~~~~~~----------------e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~ 195 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQ----------------EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTC 195 (399)
T ss_pred EcccCceEEEeec----------------ccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccc
Confidence 9999887543320 0126778999999999999999999999999998899999999988765
No 57
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.81 E-value=3.8e-18 Score=132.23 Aligned_cols=157 Identities=18% Similarity=0.196 Sum_probs=136.1
Q ss_pred CceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 023642 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (279)
Q Consensus 117 ~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~ 196 (279)
+..+.||.-+++.+.++.+|.+|++++.|.++.+|-...|+.+.. ..+|.+.|++++...+.+.+++|+.|.++++|
T Consensus 3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGt---y~GHtGavW~~Did~~s~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGT---YDGHTGAVWCCDIDWDSKHLITGSADQTAKLW 79 (327)
T ss_pred ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeee---ecCCCceEEEEEecCCcceeeeccccceeEEE
Confidence 456889999999999999999999999999999999888877665 67999999999999999999999999999999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCC-------------------------------------CCccccEEEEEEecCC
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADD-------------------------------------GGYSFGIFSLKFSTDG 239 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~v~~~~~sp~g 239 (279)
|+++|++....+.......+.|...+. ..+...++.+-|.|-+
T Consensus 80 Dv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~ 159 (327)
T KOG0643|consen 80 DVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG 159 (327)
T ss_pred EcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC
Confidence 999999987777666666666665554 1244678899999999
Q ss_pred CEEEEecCCCeEEEEECCCCe-EEEEEeCCCcceeEEE
Q 023642 240 RELVAGSSDDCIYVYDLEANK-LSLRILAHTVNIALWI 276 (279)
Q Consensus 240 ~~l~t~s~d~~i~vwd~~~~~-~~~~~~~h~~~v~~v~ 276 (279)
++|++|..||.|..||+++|+ .+...+-|...|+.+.
T Consensus 160 ~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q 197 (327)
T KOG0643|consen 160 ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQ 197 (327)
T ss_pred CEEEEecCCCcEEEEEcccCceeeechhhhcccccccc
Confidence 999999999999999999984 5566678888888764
No 58
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.9e-18 Score=134.96 Aligned_cols=168 Identities=16% Similarity=0.147 Sum_probs=125.5
Q ss_pred ccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCC
Q 023642 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR 182 (279)
Q Consensus 103 d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 182 (279)
|.++.+-.+....-...+.||...|++++.+|-+..+++++.|++|++||++..++..... .. .-..++|.|+|-
T Consensus 79 d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~-~~----~~pi~AfDp~GL 153 (311)
T KOG1446|consen 79 DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN-LS----GRPIAAFDPEGL 153 (311)
T ss_pred CCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe-cC----CCcceeECCCCc
Confidence 5556655666666667789999999999999998999999999999999999776654321 11 234579999999
Q ss_pred EEEEEeCCCeEEEEECCCCceeeeec--c----ccccceeEEeeCCC-------------------------CCcc---c
Q 023642 183 HLVYASMSPIVHIVDVGSGTMESLAN--V----TEIHDGLDFSAADD-------------------------GGYS---F 228 (279)
Q Consensus 183 ~l~~~~~d~~i~i~d~~~~~~~~~~~--~----~~~~~~~~~~~~~~-------------------------~~~~---~ 228 (279)
++|++.....|++||++.-..-+... . ......+.|++++. .++. .
T Consensus 154 ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~ 233 (311)
T KOG1446|consen 154 IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGN 233 (311)
T ss_pred EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCC
Confidence 99999988899999998743211111 1 11223455666654 0111 1
Q ss_pred cEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC-CCcceeEE
Q 023642 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-HTVNIALW 275 (279)
Q Consensus 229 ~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~-h~~~v~~v 275 (279)
.-...+|+||++++++|+.||+|++|++++|..+..+.+ +..++.++
T Consensus 234 ~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~ 281 (311)
T KOG1446|consen 234 LPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCV 281 (311)
T ss_pred cceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCcccc
Confidence 125778999999999999999999999999999999998 56666554
No 59
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.80 E-value=2.6e-18 Score=151.60 Aligned_cols=155 Identities=20% Similarity=0.184 Sum_probs=133.8
Q ss_pred eccccceEeeeeecCCCCce-eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEEC
Q 023642 100 SAADCCHMLSRYLPVNGPWP-VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~-l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 178 (279)
.+.+..+.+|+..+...... +.+|.+.|.++++..-+.++++|+.|.++++||..+|.|... +.+|...|.++...
T Consensus 224 ~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~---l~gh~stv~~~~~~ 300 (537)
T KOG0274|consen 224 GSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS---LQGHTSSVRCLTID 300 (537)
T ss_pred cCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEE---ecCCCceEEEEEcc
Confidence 34455666888877776666 899999999999988789999999999999999999998876 56899888888774
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 179 p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
+ ..+++|+.|.+|++|++.++....+.. +|..+|.++..+ +.++++|+.|++|+|||+.+
T Consensus 301 ~--~~~~sgs~D~tVkVW~v~n~~~l~l~~----------------~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~ 360 (537)
T KOG0274|consen 301 P--FLLVSGSRDNTVKVWDVTNGACLNLLR----------------GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT 360 (537)
T ss_pred C--ceEeeccCCceEEEEeccCcceEEEec----------------cccccEEEEEec--CCEEEEEecCceEEEEEhhh
Confidence 4 578889999999999999988765443 266799999987 88999999999999999999
Q ss_pred CeEEEEEeCCCcceeEEEe
Q 023642 259 NKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 259 ~~~~~~~~~h~~~v~~v~~ 277 (279)
++++.++.||...|.+++.
T Consensus 361 ~~cl~sl~gH~~~V~sl~~ 379 (537)
T KOG0274|consen 361 GKCLKSLSGHTGRVYSLIV 379 (537)
T ss_pred ceeeeeecCCcceEEEEEe
Confidence 9999999999999999753
No 60
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.2e-18 Score=149.43 Aligned_cols=162 Identities=14% Similarity=0.156 Sum_probs=137.1
Q ss_pred eccccceEeeeeecCC--CCceeeCCCCCeEEEEE-CCCCCEEEEEeCCCcEEEEEcCCCeE--E------eeeeeccCC
Q 023642 100 SAADCCHMLSRYLPVN--GPWPVDQTTSRAYVSQF-SADGSLFVAGFQASQIRIYDVERGWK--I------QKDILAKSL 168 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~--~~~~l~~h~~~V~~~~~-spd~~~l~s~~~d~~i~iwd~~~~~~--~------~~~~~~~~~ 168 (279)
.+.|.++.+|+..... ...++..|.+.|.|++. .++..++|+|+-|+.|.+||+.++.. + .......++
T Consensus 91 ~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~ 170 (735)
T KOG0308|consen 91 ASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP 170 (735)
T ss_pred ecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC
Confidence 4678899999987764 34568999999999999 88999999999999999999997722 1 111112377
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC
Q 023642 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (279)
Q Consensus 169 ~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d 248 (279)
..+|.+++..|.|..|++|+..+.+++||.++++.... +. ||+.-|..+-.++||+.++++|.|
T Consensus 171 k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk-----------Lr-----GHTdNVr~ll~~dDGt~~ls~sSD 234 (735)
T KOG0308|consen 171 KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK-----------LR-----GHTDNVRVLLVNDDGTRLLSASSD 234 (735)
T ss_pred ccceeeeecCCcceEEEecCcccceEEeccccccceee-----------ee-----ccccceEEEEEcCCCCeEeecCCC
Confidence 88999999999999999999999999999999876322 22 366699999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 249 DCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 249 ~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
++|++||+...+|++++..|...|+++..
T Consensus 235 gtIrlWdLgqQrCl~T~~vH~e~VWaL~~ 263 (735)
T KOG0308|consen 235 GTIRLWDLGQQRCLATYIVHKEGVWALQS 263 (735)
T ss_pred ceEEeeeccccceeeeEEeccCceEEEee
Confidence 99999999999999999999999998753
No 61
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.80 E-value=1.6e-18 Score=142.93 Aligned_cols=145 Identities=15% Similarity=0.142 Sum_probs=118.9
Q ss_pred eeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCe----EEeeeeeccCCCcceEEEEECC-CCCEEEEEeCCCe
Q 023642 119 PVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGW----KIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPI 192 (279)
Q Consensus 119 ~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~ 192 (279)
.|.+|.+.-++++|++ ..-.|++|+.|++|++||+.... .+.....+.+|...|..++|+| +..++++++.|+.
T Consensus 172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~ 251 (422)
T KOG0264|consen 172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK 251 (422)
T ss_pred EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCe
Confidence 6899999889999999 45578999999999999997542 2444456789999999999999 5567899999999
Q ss_pred EEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC-CCEEEEecCCCeEEEEECCC-CeEEEEEeCCCc
Q 023642 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEA-NKLSLRILAHTV 270 (279)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~t~s~d~~i~vwd~~~-~~~~~~~~~h~~ 270 (279)
+.|||++++... .... .++|.+.|+|++|+|- +..|||||.|++|.+||+|. .+++.++.+|..
T Consensus 252 L~iwD~R~~~~~-~~~~-------------~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~d 317 (422)
T KOG0264|consen 252 LMIWDTRSNTSK-PSHS-------------VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHED 317 (422)
T ss_pred EEEEEcCCCCCC-Cccc-------------ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCc
Confidence 999999974211 1111 1237889999999995 66788999999999999997 568999999999
Q ss_pred ceeEEEe
Q 023642 271 NIALWIT 277 (279)
Q Consensus 271 ~v~~v~~ 277 (279)
.|.+|-+
T Consensus 318 ev~~V~W 324 (422)
T KOG0264|consen 318 EVFQVEW 324 (422)
T ss_pred ceEEEEe
Confidence 9998865
No 62
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.80 E-value=1.2e-19 Score=139.44 Aligned_cols=158 Identities=18% Similarity=0.188 Sum_probs=127.8
Q ss_pred ccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCC
Q 023642 101 AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 180 (279)
++|=+..+|+........ -..|..-|.+++|+.|.++|++|+.+.-+||||+...+...+ ...+|.+.|..+-|.-.
T Consensus 78 aadftakvw~a~tgdelh-sf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~--E~~ghtg~Ir~v~wc~e 154 (334)
T KOG0278|consen 78 AADFTAKVWDAVTGDELH-SFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPK--EISGHTGGIRTVLWCHE 154 (334)
T ss_pred cccchhhhhhhhhhhhhh-hhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCch--hhcCCCCcceeEEEecc
Confidence 445566677776655433 346888999999999999999999999999999988754333 46799999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCC-------------------------------------
Q 023642 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD------------------------------------- 223 (279)
Q Consensus 181 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------- 223 (279)
.+.|++++.|++||+||.+++..............+.++.+++
T Consensus 155 D~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P 234 (334)
T KOG0278|consen 155 DKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHP 234 (334)
T ss_pred CceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccC
Confidence 9999999999999999999998865555444444443333333
Q ss_pred -----------------------------CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeE
Q 023642 224 -----------------------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (279)
Q Consensus 224 -----------------------------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~ 261 (279)
++|.++|.|+.|+|||...++||+||+|++|....++.
T Consensus 235 ~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 235 KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 67999999999999999999999999999999876553
No 63
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.80 E-value=1e-17 Score=137.16 Aligned_cols=159 Identities=21% Similarity=0.248 Sum_probs=134.4
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.+.++.+.+|++........+..|...+.++.|+|++.++++++.|+.|++||+.+++.... ...|...+.+++|+|
T Consensus 69 ~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~i~~~~~~~ 145 (289)
T cd00200 69 GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTT---LRGHTDWVNSVAFSP 145 (289)
T ss_pred EcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEE---eccCCCcEEEEEEcC
Confidence 45588889999877666677889999999999999999999999899999999997766554 347788899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
++.++++++.|+.+++||+++++...... . |...+.++.|+|+++.+++++.++.|++||++++
T Consensus 146 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-----------~-----~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~ 209 (289)
T cd00200 146 DGTFVASSSQDGTIKLWDLRTGKCVATLT-----------G-----HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG 209 (289)
T ss_pred cCCEEEEEcCCCcEEEEEccccccceeEe-----------c-----CccccceEEECCCcCEEEEecCCCcEEEEECCCC
Confidence 99999998889999999998766533221 1 4458999999999999999999999999999999
Q ss_pred eEEEEEeCCCcceeEEEe
Q 023642 260 KLSLRILAHTVNIALWIT 277 (279)
Q Consensus 260 ~~~~~~~~h~~~v~~v~~ 277 (279)
+.+..+..|...+.++..
T Consensus 210 ~~~~~~~~~~~~i~~~~~ 227 (289)
T cd00200 210 KCLGTLRGHENGVNSVAF 227 (289)
T ss_pred ceecchhhcCCceEEEEE
Confidence 999999889888887754
No 64
>PTZ00420 coronin; Provisional
Probab=99.80 E-value=9.4e-18 Score=148.70 Aligned_cols=147 Identities=11% Similarity=0.102 Sum_probs=113.0
Q ss_pred eccccceEeeeeecCC--------CCceeeCCCCCeEEEEECCCCCE-EEEEeCCCcEEEEEcCCCeEEeeeeeccCCCc
Q 023642 100 SAADCCHMLSRYLPVN--------GPWPVDQTTSRAYVSQFSADGSL-FVAGFQASQIRIYDVERGWKIQKDILAKSLRW 170 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~--------~~~~l~~h~~~V~~~~~spd~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 170 (279)
++.|+.+.+|++.... ....+.+|...|.+++|+|++.. |++++.|++|+|||+.+++..... .|..
T Consensus 93 gS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i----~~~~ 168 (568)
T PTZ00420 93 GSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI----NMPK 168 (568)
T ss_pred EeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE----ecCC
Confidence 5678899999986432 12347899999999999998876 578999999999999998655432 2456
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCcccc-----EEEEEEecCCCEEEEe
Q 023642 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFG-----IFSLKFSTDGRELVAG 245 (279)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~sp~g~~l~t~ 245 (279)
.|.+++|+|+|.+|++++.|+.|+|||+++++.... +.+ |.+. ++...|++++.+|+++
T Consensus 169 ~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t-----------l~g-----H~g~~~s~~v~~~~fs~d~~~IlTt 232 (568)
T PTZ00420 169 KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS-----------FHI-----HDGGKNTKNIWIDGLGGDDNYILST 232 (568)
T ss_pred cEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE-----------Eec-----ccCCceeEEEEeeeEcCCCCEEEEE
Confidence 799999999999999999999999999999876432 112 3223 3334567899999987
Q ss_pred cCCC----eEEEEECCC-CeEEEEEe
Q 023642 246 SSDD----CIYVYDLEA-NKLSLRIL 266 (279)
Q Consensus 246 s~d~----~i~vwd~~~-~~~~~~~~ 266 (279)
+.|+ .|+|||++. ++++..+.
T Consensus 233 G~d~~~~R~VkLWDlr~~~~pl~~~~ 258 (568)
T PTZ00420 233 GFSKNNMREMKLWDLKNTTSALVTMS 258 (568)
T ss_pred EcCCCCccEEEEEECCCCCCceEEEE
Confidence 7664 799999995 66666654
No 65
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.80 E-value=1.2e-18 Score=136.99 Aligned_cols=173 Identities=17% Similarity=0.130 Sum_probs=134.3
Q ss_pred eccccceEeeeeecC--CCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEE
Q 023642 100 SAADCCHMLSRYLPV--NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL 177 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~--~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (279)
++-|+.+++|.+... -.+.....|.++|.+++|+.||..+++|+.|+.+++||+.+++... ...|.++|..+.|
T Consensus 46 ~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~----v~~Hd~pvkt~~w 121 (347)
T KOG0647|consen 46 GSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQ----VAAHDAPVKTCHW 121 (347)
T ss_pred cccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeee----eeecccceeEEEE
Confidence 467999999999874 2345578899999999999999999999999999999999995543 4689999999999
Q ss_pred CCCCC--EEEEEeCCCeEEEEECCCCceeeeeccccccc-----------------------------------------
Q 023642 178 SPDQR--HLVYASMSPIVHIVDVGSGTMESLANVTEIHD----------------------------------------- 214 (279)
Q Consensus 178 sp~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~----------------------------------------- 214 (279)
-+... .|++||.|++++.||.+.........+.+..-
T Consensus 122 v~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~ 201 (347)
T KOG0647|consen 122 VPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQT 201 (347)
T ss_pred ecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCccccee
Confidence 88665 79999999999999998765533222111100
Q ss_pred ---------------------------------eeEEeeCCCCC----ccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 215 ---------------------------------GLDFSAADDGG----YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 215 ---------------------------------~~~~~~~~~~~----~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
.+.|..|...+ .-..|++++|+|....|+|++.||++.+||-.
T Consensus 202 R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 202 RCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred eEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecch
Confidence 00111111000 12457889999999999999999999999998
Q ss_pred CCeEEEEEeCCCcceeEEE
Q 023642 258 ANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 258 ~~~~~~~~~~h~~~v~~v~ 276 (279)
....+++.+.|.++|.+..
T Consensus 282 ar~kLk~s~~~~qpItcc~ 300 (347)
T KOG0647|consen 282 ARTKLKTSETHPQPITCCS 300 (347)
T ss_pred hhhhhhccCcCCCccceeE
Confidence 8888999999999988753
No 66
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.80 E-value=6e-18 Score=158.83 Aligned_cols=158 Identities=16% Similarity=0.222 Sum_probs=127.7
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEEC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 178 (279)
.+.|+.+.+|++........+.+|.+.|++++|+| ++.+|++|+.|+.|++||+.++..+... .. ...|.++.|+
T Consensus 551 ~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~---~~-~~~v~~v~~~ 626 (793)
T PLN00181 551 SNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI---KT-KANICCVQFP 626 (793)
T ss_pred EeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE---ec-CCCeEEEEEe
Confidence 45588889998876655566889999999999997 7899999999999999999988766542 22 3468999995
Q ss_pred -CCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 179 -PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 179 -p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
+++.+|++|+.|+.|++||+++...... .+. +|...|.++.|. ++.+|++++.|++|++||++
T Consensus 627 ~~~g~~latgs~dg~I~iwD~~~~~~~~~----------~~~-----~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 627 SESGRSLAFGSADHKVYYYDLRNPKLPLC----------TMI-----GHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCccce----------Eec-----CCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence 5799999999999999999987652110 111 266799999997 78899999999999999997
Q ss_pred C------CeEEEEEeCCCcceeEEEe
Q 023642 258 A------NKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 258 ~------~~~~~~~~~h~~~v~~v~~ 277 (279)
. ..++.++.+|...++++..
T Consensus 691 ~~~~~~~~~~l~~~~gh~~~i~~v~~ 716 (793)
T PLN00181 691 MSISGINETPLHSFMGHTNVKNFVGL 716 (793)
T ss_pred CCccccCCcceEEEcCCCCCeeEEEE
Confidence 4 3678899999988877654
No 67
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.80 E-value=4.1e-20 Score=146.83 Aligned_cols=142 Identities=18% Similarity=0.187 Sum_probs=122.0
Q ss_pred eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeee-----eeccCCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 023642 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD-----ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (279)
Q Consensus 121 ~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (279)
.+..+.+.|..|||||++|++|+.||-|.+|+..+|+..... -.+.-+..+|.++.|+.|...+|+|+.||.|++
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 456788999999999999999999999999999988432221 123356778999999999999999999999999
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEE
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALW 275 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v 275 (279)
|.+++|.+.. ++.. .|+..|+++.||.|+..+++++.|.++++.-+++|++++.++||...|+.+
T Consensus 290 Wri~tG~ClR--rFdr-------------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a 354 (508)
T KOG0275|consen 290 WRIETGQCLR--RFDR-------------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEA 354 (508)
T ss_pred EEEecchHHH--Hhhh-------------hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccce
Confidence 9999999843 2221 277799999999999999999999999999999999999999999999877
Q ss_pred Ee
Q 023642 276 IT 277 (279)
Q Consensus 276 ~~ 277 (279)
..
T Consensus 355 ~f 356 (508)
T KOG0275|consen 355 TF 356 (508)
T ss_pred EE
Confidence 54
No 68
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.80 E-value=1.3e-17 Score=156.59 Aligned_cols=166 Identities=18% Similarity=0.203 Sum_probs=130.5
Q ss_pred ccCCCCee---eccccceEeeeeecCC-------CCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEe
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVN-------GPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQ 160 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~-------~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~ 160 (279)
.|++++.+ ++.|+.+.+|+..... .+.....+...|.+++|+| ++.+|++++.|++|++||+.+++.+.
T Consensus 490 ~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~ 569 (793)
T PLN00181 490 GFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVT 569 (793)
T ss_pred EECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence 45666664 4678899999864311 1112233457899999997 57899999999999999999886655
Q ss_pred eeeeccCCCcceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEe-cC
Q 023642 161 KDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS-TD 238 (279)
Q Consensus 161 ~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~ 238 (279)
. +.+|...|++++|+| ++.+|++++.|++|++||++++....... +...+.++.|+ ++
T Consensus 570 ~---~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-----------------~~~~v~~v~~~~~~ 629 (793)
T PLN00181 570 E---MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-----------------TKANICCVQFPSES 629 (793)
T ss_pred E---ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-----------------cCCCeEEEEEeCCC
Confidence 4 468999999999997 78999999999999999999876543221 11368899995 56
Q ss_pred CCEEEEecCCCeEEEEECCCCe-EEEEEeCCCcceeEEEe
Q 023642 239 GRELVAGSSDDCIYVYDLEANK-LSLRILAHTVNIALWIT 277 (279)
Q Consensus 239 g~~l~t~s~d~~i~vwd~~~~~-~~~~~~~h~~~v~~v~~ 277 (279)
|.+|++|+.|+.|++||+++++ ++..+.+|...|.++..
T Consensus 630 g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f 669 (793)
T PLN00181 630 GRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRF 669 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEE
Confidence 9999999999999999998765 67888999999988754
No 69
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.3e-18 Score=149.02 Aligned_cols=157 Identities=14% Similarity=0.125 Sum_probs=123.3
Q ss_pred eccccceEeeeeecCCCCc-eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEEC
Q 023642 100 SAADCCHMLSRYLPVNGPW-PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~-~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 178 (279)
++.++.+..+++...+... ++.+|...|..+.|++|+.+||+|+.|+.+.|||.....++.. +.+|...|.+++|+
T Consensus 276 Gsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~---~~~H~aAVKA~awc 352 (484)
T KOG0305|consen 276 GSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFT---FTEHTAAVKALAWC 352 (484)
T ss_pred ecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEE---EeccceeeeEeeeC
Confidence 3455566666655443322 4889999999999999999999999999999999966555443 56999999999999
Q ss_pred C-CCCEEEEEe--CCCeEEEEECCCCceeeeeccccccceeEEeeCCC---------------------------CCccc
Q 023642 179 P-DQRHLVYAS--MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD---------------------------GGYSF 228 (279)
Q Consensus 179 p-~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~ 228 (279)
| ....||+|+ .|+.|++||+.++..............+.+..+.. .+|..
T Consensus 353 P~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~ 432 (484)
T KOG0305|consen 353 PWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS 432 (484)
T ss_pred CCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc
Confidence 9 456788765 68999999999888755444433334444443332 67999
Q ss_pred cEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 229 ~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
.|..++++|||..+++|+.|.++++|++-..
T Consensus 433 RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 433 RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 9999999999999999999999999998653
No 70
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.8e-18 Score=131.81 Aligned_cols=144 Identities=15% Similarity=0.202 Sum_probs=126.0
Q ss_pred CCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeE
Q 023642 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (279)
Q Consensus 114 ~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i 193 (279)
+....++..+.++|.++.|+-||++.++++.|.+|++|+...|.+++. ..+|...|.+++.+.|...+++|+.|+.+
T Consensus 7 tkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~likt---YsghG~EVlD~~~s~Dnskf~s~GgDk~v 83 (307)
T KOG0316|consen 7 TKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKT---YSGHGHEVLDAALSSDNSKFASCGGDKAV 83 (307)
T ss_pred chhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeee---ecCCCceeeeccccccccccccCCCCceE
Confidence 334456889999999999999999999999999999999999988776 46888899999999999999999999999
Q ss_pred EEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC--CeEEEEEeCCCcc
Q 023642 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA--NKLSLRILAHTVN 271 (279)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~--~~~~~~~~~h~~~ 271 (279)
.+||+.+|+..... . +|.+.|+.+.|+.+...+++|+-|.++++||-++ -++++.+..-.+.
T Consensus 84 ~vwDV~TGkv~Rr~-----------r-----gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~ 147 (307)
T KOG0316|consen 84 QVWDVNTGKVDRRF-----------R-----GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDG 147 (307)
T ss_pred EEEEcccCeeeeec-----------c-----cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCc
Confidence 99999999975432 2 3777999999999999999999999999999876 4688988877777
Q ss_pred eeEEE
Q 023642 272 IALWI 276 (279)
Q Consensus 272 v~~v~ 276 (279)
|.++.
T Consensus 148 V~Si~ 152 (307)
T KOG0316|consen 148 VSSID 152 (307)
T ss_pred eeEEE
Confidence 77764
No 71
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=8.6e-19 Score=154.96 Aligned_cols=136 Identities=15% Similarity=0.127 Sum_probs=122.8
Q ss_pred ccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCC
Q 023642 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR 182 (279)
Q Consensus 103 d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 182 (279)
.+.+.+|++........+..|.++|..++|+|++.+|++|+.|-+|++|+..+.+|+.. +.+|-..|+.+.|++.-.
T Consensus 30 sG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft---L~GHlDYVRt~~FHheyP 106 (1202)
T KOG0292|consen 30 SGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT---LLGHLDYVRTVFFHHEYP 106 (1202)
T ss_pred CceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh---hccccceeEEeeccCCCc
Confidence 45567888877777777999999999999999999999999999999999999887665 679999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 183 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
+|+++|.|-+|+||+-.+.+++.... ||+..|.|..|+|....++++|-|.+|+|||+.
T Consensus 107 WIlSASDDQTIrIWNwqsr~~iavlt----------------GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDis 165 (1202)
T KOG0292|consen 107 WILSASDDQTIRIWNWQSRKCIAVLT----------------GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDIS 165 (1202)
T ss_pred eEEEccCCCeEEEEeccCCceEEEEe----------------cCceEEEeeccCCccceEEEecccceEEEEeec
Confidence 99999999999999999999876543 377799999999999999999999999999984
No 72
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=4.5e-19 Score=136.41 Aligned_cols=158 Identities=19% Similarity=0.167 Sum_probs=127.6
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEEC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 178 (279)
++-|+++.+|.....+...++.+|...|+..+|+| .+++|++++.|+.+++||++..-+. .....|...|.++.|+
T Consensus 123 sSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~---~~i~ah~~Eil~cdw~ 199 (311)
T KOG0277|consen 123 SSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF---MSIEAHNSEILCCDWS 199 (311)
T ss_pred eccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCce---eEEEeccceeEeeccc
Confidence 56799999999988888889999999999999999 7889999999999999999764221 1245777789999999
Q ss_pred C-CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC-CCEEEEecCCCeEEEEEC
Q 023642 179 P-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDL 256 (279)
Q Consensus 179 p-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~t~s~d~~i~vwd~ 256 (279)
. +.+.+++++.|+.|+.||+++-+.. +.. +. +|...|..++|||. ...|++++.|-+++|||.
T Consensus 200 ky~~~vl~Tg~vd~~vr~wDir~~r~p-l~e---------L~-----gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~ 264 (311)
T KOG0277|consen 200 KYNHNVLATGGVDNLVRGWDIRNLRTP-LFE---------LN-----GHGLAVRKVKFSPHHASLLASASYDMTVRIWDP 264 (311)
T ss_pred ccCCcEEEecCCCceEEEEehhhcccc-cee---------ec-----CCceEEEEEecCcchhhHhhhccccceEEeccc
Confidence 8 5567899999999999999986632 111 11 36679999999997 557899999999999998
Q ss_pred CCC-eEEEEEeCCCcceeEE
Q 023642 257 EAN-KLSLRILAHTVNIALW 275 (279)
Q Consensus 257 ~~~-~~~~~~~~h~~~v~~v 275 (279)
..+ .++.+...|+..|-.+
T Consensus 265 ~~~ds~~e~~~~HtEFv~g~ 284 (311)
T KOG0277|consen 265 ERQDSAIETVDHHTEFVCGL 284 (311)
T ss_pred ccchhhhhhhhccceEEecc
Confidence 743 4566667777665443
No 73
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.80 E-value=1.1e-18 Score=140.88 Aligned_cols=147 Identities=22% Similarity=0.289 Sum_probs=110.1
Q ss_pred CeeeccccceEeeeeecCCCCc-----eeeCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCc
Q 023642 97 GRFSAADCCHMLSRYLPVNGPW-----PVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW 170 (279)
Q Consensus 97 ~~~~~~d~~~~~~~~~~~~~~~-----~l~~h~~~V~~~~~spd-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 170 (279)
|++.+.|+...+....+..+.| .+.+|+..|-.++|||. ...|++++-|+.|+|||++.+....... ...|.+
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~s 303 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNS 303 (440)
T ss_pred cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCC
Confidence 4445555543333222333433 36789999999999994 5678999999999999999884433322 378999
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC-CCEEEEecCCC
Q 023642 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDD 249 (279)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~t~s~d~ 249 (279)
.|..+.|+.+-.+||+|+.||+++|||++..+..... ..|.- |..+|+++.|+|. ...|++++.|.
T Consensus 304 DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pV--------A~fk~-----Hk~pItsieW~p~e~s~iaasg~D~ 370 (440)
T KOG0302|consen 304 DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPV--------ATFKY-----HKAPITSIEWHPHEDSVIAASGEDN 370 (440)
T ss_pred ceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcc--------eeEEe-----ccCCeeEEEeccccCceEEeccCCC
Confidence 9999999998889999999999999999975542110 12222 7779999999995 56778888999
Q ss_pred eEEEEECC
Q 023642 250 CIYVYDLE 257 (279)
Q Consensus 250 ~i~vwd~~ 257 (279)
.|.+||+.
T Consensus 371 QitiWDls 378 (440)
T KOG0302|consen 371 QITIWDLS 378 (440)
T ss_pred cEEEEEee
Confidence 99999985
No 74
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.3e-19 Score=156.85 Aligned_cols=154 Identities=19% Similarity=0.215 Sum_probs=129.9
Q ss_pred ccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCC
Q 023642 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR 182 (279)
Q Consensus 103 d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 182 (279)
+..+-+|..-......-+.+|..+|.++.|+++..+|++|+.+|+|++||+..++.++. +.+|...+..+.|+|-+.
T Consensus 49 ~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrt---Ltgh~~~~~sv~f~P~~~ 125 (825)
T KOG0267|consen 49 DEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRT---LTGHLLNITSVDFHPYGE 125 (825)
T ss_pred ceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhh---hhccccCcceeeeccceE
Confidence 33444554433333334789999999999999999999999999999999998876664 678999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEE
Q 023642 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 262 (279)
Q Consensus 183 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~ 262 (279)
+.+.++.|+.+++||.+...+..... +|...+..+.|+|+|++++.++.|.+++|||+..|+.+
T Consensus 126 ~~a~gStdtd~~iwD~Rk~Gc~~~~~----------------s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~ 189 (825)
T KOG0267|consen 126 FFASGSTDTDLKIWDIRKKGCSHTYK----------------SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS 189 (825)
T ss_pred EeccccccccceehhhhccCceeeec----------------CCcceeEEEeecCCCceeeccCCcceeeeecccccccc
Confidence 99999999999999999665543221 26668999999999999999999999999999999999
Q ss_pred EEEeCCCcceeEE
Q 023642 263 LRILAHTVNIALW 275 (279)
Q Consensus 263 ~~~~~h~~~v~~v 275 (279)
..|.+|...|.++
T Consensus 190 ~ef~~~e~~v~sl 202 (825)
T KOG0267|consen 190 KEFKSHEGKVQSL 202 (825)
T ss_pred ccccccccccccc
Confidence 9999999888765
No 75
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.79 E-value=1.6e-18 Score=140.08 Aligned_cols=164 Identities=13% Similarity=0.140 Sum_probs=129.9
Q ss_pred eccccceEeeeeecC----------------CCCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeee
Q 023642 100 SAADCCHMLSRYLPV----------------NGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKD 162 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~----------------~~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~ 162 (279)
.+..+.+.+|++-+. ....++.+|...=++++||| .-..|++|.--+.|++|...+|......
T Consensus 171 wse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~ 250 (440)
T KOG0302|consen 171 WSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQ 250 (440)
T ss_pred ecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecC
Confidence 345566677765431 22345789999999999999 2334778887889999999887554444
Q ss_pred eeccCCCcceEEEEECCCC-CEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCE
Q 023642 163 ILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 241 (279)
Q Consensus 163 ~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 241 (279)
..+.+|+..|.+++|||.. ..|++|+.|++|+|||++.+........ +.|.+.|+.+.|+..-.+
T Consensus 251 ~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~--------------kAh~sDVNVISWnr~~~l 316 (440)
T KOG0302|consen 251 RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST--------------KAHNSDVNVISWNRREPL 316 (440)
T ss_pred ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe--------------eccCCceeeEEccCCcce
Confidence 5567899999999999965 5789999999999999999854322211 126679999999998889
Q ss_pred EEEecCCCeEEEEECCC---CeEEEEEeCCCcceeEEEe
Q 023642 242 LVAGSSDDCIYVYDLEA---NKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 242 l~t~s~d~~i~vwd~~~---~~~~~~~~~h~~~v~~v~~ 277 (279)
|++|+.||+++|||++. ++++.+|+.|..+|+++-+
T Consensus 317 LasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW 355 (440)
T KOG0302|consen 317 LASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEW 355 (440)
T ss_pred eeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEe
Confidence 99999999999999985 7799999999999999865
No 76
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.79 E-value=1e-18 Score=142.61 Aligned_cols=167 Identities=19% Similarity=0.232 Sum_probs=128.1
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeee--------------c
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL--------------A 165 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------------~ 165 (279)
.+.|+...+|++...+...+|.+|++.|+++.|......+++|+.|.+|++||+....|...... .
T Consensus 237 as~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~ 316 (459)
T KOG0288|consen 237 ASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVI 316 (459)
T ss_pred ecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeee
Confidence 46788899999999999999999999999999988777788888888777777765543332111 0
Q ss_pred c---------------------CCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCC
Q 023642 166 K---------------------SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG 224 (279)
Q Consensus 166 ~---------------------~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (279)
. ...+.|+++..++++..|.+++.|.++.+.|+++.+...........
T Consensus 317 SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k----------- 385 (459)
T KOG0288|consen 317 SGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFK----------- 385 (459)
T ss_pred ecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccc-----------
Confidence 1 12336888888888888888888888888888887765433222111
Q ss_pred CccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcc--eeEEEee
Q 023642 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVN--IALWITC 278 (279)
Q Consensus 225 ~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~--v~~v~~~ 278 (279)
-...++.+.|||++.|+++||.||.|+||++.++++...+...... |+++.++
T Consensus 386 -~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~ 440 (459)
T KOG0288|consen 386 -CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWN 440 (459)
T ss_pred -cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEc
Confidence 1125789999999999999999999999999999999999865544 8888764
No 77
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.79 E-value=6.3e-19 Score=139.29 Aligned_cols=166 Identities=17% Similarity=0.218 Sum_probs=130.5
Q ss_pred CccCCCCee---eccccceEeeeeec------------CC---C-C--ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEE
Q 023642 91 GNYSGRGRF---SAADCCHMLSRYLP------------VN---G-P--WPVDQTTSRAYVSQFSADGSLFVAGFQASQIR 149 (279)
Q Consensus 91 ~~~~~~~~~---~~~d~~~~~~~~~~------------~~---~-~--~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~ 149 (279)
..|+++|.+ ++.|..+.+-+... .. . + .++..|.+.|+++.|+|....|++|+.|++|+
T Consensus 118 aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvK 197 (430)
T KOG0640|consen 118 AAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVK 197 (430)
T ss_pred eeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEE
Confidence 468899988 46677777665431 11 1 1 34678999999999999999999999999999
Q ss_pred EEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCcccc
Q 023642 150 IYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFG 229 (279)
Q Consensus 150 iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (279)
+||+......+....+ ....+|.++.|+|.|.+|+.|..-.++++||+.+-++-.. ...+..|++.
T Consensus 198 lFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs-------------anPd~qht~a 263 (430)
T KOG0640|consen 198 LFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS-------------ANPDDQHTGA 263 (430)
T ss_pred EEecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee-------------cCcccccccc
Confidence 9999865332222222 2234799999999999999999999999999999876321 1122348889
Q ss_pred EEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe-CCCc
Q 023642 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTV 270 (279)
Q Consensus 230 v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~-~h~~ 270 (279)
|+++.+++.|++.+|++.||.|++||--+++|+.++. +|.+
T Consensus 264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g 305 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG 305 (430)
T ss_pred eeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999998886 4544
No 78
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.79 E-value=4.6e-18 Score=140.21 Aligned_cols=153 Identities=11% Similarity=0.120 Sum_probs=122.2
Q ss_pred eccccceEeeeee--cCCCCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEE
Q 023642 100 SAADCCHMLSRYL--PVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS 176 (279)
Q Consensus 100 ~~~d~~~~~~~~~--~~~~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 176 (279)
.+.|+.+.+|+.. +........+|++.|+|++|+| ++..||+|+.|++|.+||++.-.. ....+.+|...|..+.
T Consensus 246 v~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H~dev~~V~ 323 (422)
T KOG0264|consen 246 VGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--PLHTFEGHEDEVFQVE 323 (422)
T ss_pred ecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--CceeccCCCcceEEEE
Confidence 5678899999998 4555667899999999999999 667789999999999999987543 3345789999999999
Q ss_pred ECCCC-CEEEEEeCCCeEEEEECCCCce-eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCE-EEEecCCCeEEE
Q 023642 177 LSPDQ-RHLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE-LVAGSSDDCIYV 253 (279)
Q Consensus 177 ~sp~~-~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~-l~t~s~d~~i~v 253 (279)
|+|+. ..||+++.|+.+.+||+..-.. .........+..+.|... ||...|..+.|+|+..+ +++.+.|+.+.|
T Consensus 324 WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~Hg---GH~~kV~DfsWnp~ePW~I~SvaeDN~LqI 400 (422)
T KOG0264|consen 324 WSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHG---GHTAKVSDFSWNPNEPWTIASVAEDNILQI 400 (422)
T ss_pred eCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEec---CcccccccccCCCCCCeEEEEecCCceEEE
Confidence 99965 5688999999999999976333 222334444445455543 49999999999999876 557889999999
Q ss_pred EECC
Q 023642 254 YDLE 257 (279)
Q Consensus 254 wd~~ 257 (279)
|+..
T Consensus 401 W~~s 404 (422)
T KOG0264|consen 401 WQMA 404 (422)
T ss_pred eecc
Confidence 9975
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=3.7e-18 Score=141.95 Aligned_cols=165 Identities=16% Similarity=0.220 Sum_probs=123.9
Q ss_pred ccCCCCeeeccccceEeeeeecCCC---CceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccC
Q 023642 92 NYSGRGRFSAADCCHMLSRYLPVNG---PWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKS 167 (279)
Q Consensus 92 ~~~~~~~~~~~d~~~~~~~~~~~~~---~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 167 (279)
.|..+|++.+..+......++.... ...+.+|+.+|..+.|+| ++..|++|+.|+.+++||+.+... ...+.+
T Consensus 75 ~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v---~~~l~~ 151 (487)
T KOG0310|consen 75 DFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV---QAELSG 151 (487)
T ss_pred EeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE---EEEecC
Confidence 4566777754433333333333222 234789999999999999 556678899999999999998863 234689
Q ss_pred CCcceEEEEECCCC-CEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec
Q 023642 168 LRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 168 ~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
|+++|++.+|+|-. ..+++|+.||.|++||++..... .... .|..+|.++.|-|.|..+++++
T Consensus 152 htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~-v~el---------------nhg~pVe~vl~lpsgs~iasAg 215 (487)
T KOG0310|consen 152 HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR-VVEL---------------NHGCPVESVLALPSGSLIASAG 215 (487)
T ss_pred CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCce-eEEe---------------cCCCceeeEEEcCCCCEEEEcC
Confidence 99999999999954 57899999999999999986421 1111 1555999999999999999987
Q ss_pred CCCeEEEEECCCC-eEEEEEeCCCcceeEEE
Q 023642 247 SDDCIYVYDLEAN-KLSLRILAHTVNIALWI 276 (279)
Q Consensus 247 ~d~~i~vwd~~~~-~~~~~~~~h~~~v~~v~ 276 (279)
. ..|+|||+.+| +.+..+..|...|+|+.
T Consensus 216 G-n~vkVWDl~~G~qll~~~~~H~KtVTcL~ 245 (487)
T KOG0310|consen 216 G-NSVKVWDLTTGGQLLTSMFNHNKTVTCLR 245 (487)
T ss_pred C-CeEEEEEecCCceehhhhhcccceEEEEE
Confidence 4 56999999855 55555556999999875
No 80
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.79 E-value=5.8e-18 Score=139.05 Aligned_cols=161 Identities=18% Similarity=0.160 Sum_probs=137.8
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
++.|...++.+.-..+...+++||...|+.+.++|+...+++++.|..|+||......+.. ....|..+|+.+..+|
T Consensus 237 GG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~ 313 (506)
T KOG0289|consen 237 GGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHP 313 (506)
T ss_pred cCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc---ccccccccceeeeecc
Confidence 4566677777776666677899999999999999999999999999999999987654332 3578999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
.|.||++++.|++..+.|++++.......... ..-.+++.+|+|||..|.+|..|+.|+|||++++
T Consensus 314 tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~--------------s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~ 379 (506)
T KOG0289|consen 314 TGEYLLSASNDGTWAFSDISSGSQLTVVSDET--------------SDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ 379 (506)
T ss_pred CCcEEEEecCCceEEEEEccCCcEEEEEeecc--------------ccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence 99999999999999999999998754332210 1115899999999999999999999999999999
Q ss_pred eEEEEEeCCCcceeEEEe
Q 023642 260 KLSLRILAHTVNIALWIT 277 (279)
Q Consensus 260 ~~~~~~~~h~~~v~~v~~ 277 (279)
..+..|++|.++|.++..
T Consensus 380 ~~~a~Fpght~~vk~i~F 397 (506)
T KOG0289|consen 380 TNVAKFPGHTGPVKAISF 397 (506)
T ss_pred cccccCCCCCCceeEEEe
Confidence 999999999999998864
No 81
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=9.6e-18 Score=147.67 Aligned_cols=178 Identities=17% Similarity=0.176 Sum_probs=134.1
Q ss_pred chhhhhccccCcc-----CCCCee--eccccceEeeeeecCCCCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEE
Q 023642 81 STVKMLAGREGNY-----SGRGRF--SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYD 152 (279)
Q Consensus 81 ~~~~~~~~~~~~~-----~~~~~~--~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd 152 (279)
.+...+.||...+ +.++-+ ++.|+++.+|++-. ..-.....|.+-|+|++|+| |.++|++|+-|++||||+
T Consensus 360 kP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~-~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWs 438 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGR-KECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWS 438 (712)
T ss_pred cchhhhhccchhheecccccCCeeEeccccccEEeecCCC-cceeeEEecCCeeEEEEecccCCCcEeecccccceEEee
Confidence 3556778887654 333333 67899999999763 33345678999999999999 899999999999999999
Q ss_pred cCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEE
Q 023642 153 VERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFS 232 (279)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 232 (279)
+...+.+. -.....-|++++|.|||++.+.|+.+|.+++|++...+......+ .........|. .|+.
T Consensus 439 I~d~~Vv~----W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I-------~~~~~Kk~~~~-rITG 506 (712)
T KOG0283|consen 439 ISDKKVVD----WNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI-------RLHNKKKKQGK-RITG 506 (712)
T ss_pred cCcCeeEe----ehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE-------eeccCccccCc-eeee
Confidence 98874432 234456799999999999999999999999999998776432221 11111112233 8999
Q ss_pred EEEecCCC-EEEEecCCCeEEEEECCCCeEEEEEeCCCcc
Q 023642 233 LKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHTVN 271 (279)
Q Consensus 233 ~~~sp~g~-~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~ 271 (279)
+.|.|... .+++.+.|..|+|+|.++..++.+|+|+...
T Consensus 507 ~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~ 546 (712)
T KOG0283|consen 507 LQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT 546 (712)
T ss_pred eEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC
Confidence 99997543 4556688999999999888888888876543
No 82
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.78 E-value=4e-18 Score=134.15 Aligned_cols=127 Identities=20% Similarity=0.243 Sum_probs=108.5
Q ss_pred CCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCC-CeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECC
Q 023642 122 QTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (279)
Q Consensus 122 ~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~ 199 (279)
...+.|.+++||| ...++++|+.|++||+|++.. |....+ ....|.++|.+++|+.||..+++++.|+.+++||+.
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k--a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK--AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccch--hhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence 4578899999999 666777999999999999976 444443 346899999999999999999999999999999999
Q ss_pred CCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCC--EEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~--~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
+++...+.. |..+|..+.|-+... .|+|||.|.+|+.||.+...++.++.-
T Consensus 103 S~Q~~~v~~-----------------Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L 155 (347)
T KOG0647|consen 103 SGQVSQVAA-----------------HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL 155 (347)
T ss_pred CCCeeeeee-----------------cccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec
Confidence 998754432 677999999987655 789999999999999999998888763
No 83
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=1.7e-18 Score=141.47 Aligned_cols=139 Identities=22% Similarity=0.304 Sum_probs=115.9
Q ss_pred cCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCe
Q 023642 113 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (279)
Q Consensus 113 ~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~ 192 (279)
|.+..+++..|++.|.-+.||++|++||+++.|.+..+|++..-..+.....+.+|..+|..+.||||.++|++|+.|..
T Consensus 213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~ 292 (519)
T KOG0293|consen 213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV 292 (519)
T ss_pred CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh
Confidence 55666779999999999999999999999999999999998655444444557799999999999999999999999999
Q ss_pred EEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
+++||+.+|........ ++...+.+++|.|||..+++|+.|+++..||+. |..+..+++
T Consensus 293 ~~lwDv~tgd~~~~y~~---------------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~g 351 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPS---------------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEG 351 (519)
T ss_pred eeeccCCcchhhhhccc---------------CcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccc
Confidence 99999999987443221 133478999999999999999999999999986 444444444
No 84
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=4.7e-18 Score=148.30 Aligned_cols=143 Identities=11% Similarity=0.168 Sum_probs=116.0
Q ss_pred eccccceEeeeeecC-CCC--ceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEE
Q 023642 100 SAADCCHMLSRYLPV-NGP--WPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDT 175 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~-~~~--~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 175 (279)
.+..+.+.+|++-.. ..+ ..+..|.-.|.++.|++ ...+|++|++||.|++||++....... +.+....|+++
T Consensus 106 ~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t---~~~nSESiRDV 182 (839)
T KOG0269|consen 106 CSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKST---FRSNSESIRDV 182 (839)
T ss_pred ecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccc---ccccchhhhce
Confidence 456778889998762 223 35889999999999999 556889999999999999997755443 34566689999
Q ss_pred EECC-CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEE
Q 023642 176 SLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY 254 (279)
Q Consensus 176 ~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vw 254 (279)
+|+| .+..++++...|.+.+||++........ . ..|.++|.|+.|+|++.+||||++|+.|+||
T Consensus 183 ~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k-~--------------~AH~GpV~c~nwhPnr~~lATGGRDK~vkiW 247 (839)
T KOG0269|consen 183 KFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKK-L--------------TAHNGPVLCLNWHPNREWLATGGRDKMVKIW 247 (839)
T ss_pred eeccCCCceEEEecCCceEEEeeccCchhHHHH-h--------------hcccCceEEEeecCCCceeeecCCCccEEEE
Confidence 9999 5778999999999999999976542111 1 1288899999999999999999999999999
Q ss_pred ECCCCe
Q 023642 255 DLEANK 260 (279)
Q Consensus 255 d~~~~~ 260 (279)
|+.+++
T Consensus 248 d~t~~~ 253 (839)
T KOG0269|consen 248 DMTDSR 253 (839)
T ss_pred eccCCC
Confidence 998654
No 85
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.77 E-value=9.8e-18 Score=148.03 Aligned_cols=153 Identities=15% Similarity=0.143 Sum_probs=130.2
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
++.|..+.+|++.......++.+|.++|.++..+ +.++++|+.|++|++||+.+++++.. +.+|...|.++.+.+
T Consensus 307 gs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~s---l~gH~~~V~sl~~~~ 381 (537)
T KOG0274|consen 307 GSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKS---LSGHTGRVYSLIVDS 381 (537)
T ss_pred ccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeee---ecCCcceEEEEEecC
Confidence 3589999999998777777888899999999998 89999999999999999999988876 578999999998866
Q ss_pred CCCEEEEEeCCCeEEEEECCCC-ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
. ..+++|+.|++|++||+++. ++..... +|..-+..+.+ .+++|++++.|++|++||..+
T Consensus 382 ~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~----------------~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~ 442 (537)
T KOG0274|consen 382 E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ----------------GHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEE 442 (537)
T ss_pred c-ceEEeeeeccceEeecCCchhhhhhhhc----------------CCccccccccc--ccceeEeccccccEEEeeccc
Confidence 5 89999999999999999998 5432221 25556655554 588999999999999999999
Q ss_pred CeEEEEEeC-CCcceeEEE
Q 023642 259 NKLSLRILA-HTVNIALWI 276 (279)
Q Consensus 259 ~~~~~~~~~-h~~~v~~v~ 276 (279)
++++.++.+ |...|.++.
T Consensus 443 ~~~~~~~~~~~~~~v~~l~ 461 (537)
T KOG0274|consen 443 GECLRTLEGRHVGGVSALA 461 (537)
T ss_pred CceeeeeccCCcccEEEee
Confidence 999999999 677777664
No 86
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.76 E-value=6.5e-17 Score=125.06 Aligned_cols=160 Identities=18% Similarity=0.144 Sum_probs=126.3
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEe-------------------
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ------------------- 160 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~------------------- 160 (279)
.+.|+.+++|+.........+..-.+.+ -+.|+|+|.+++.++.|..|...|.++.+...
T Consensus 83 as~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~ 161 (313)
T KOG1407|consen 83 ASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDL 161 (313)
T ss_pred ecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCE
Confidence 6789999999998877665555554544 47899999999999999998888876532211
Q ss_pred -------------------eeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeC
Q 023642 161 -------------------KDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA 221 (279)
Q Consensus 161 -------------------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 221 (279)
.......|.....++.|+|+|+++|+|+.|-.+.+||+..--+......
T Consensus 162 Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR------------ 229 (313)
T KOG1407|consen 162 FFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR------------ 229 (313)
T ss_pred EEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecc------------
Confidence 1112347777888999999999999999999999999987665433221
Q ss_pred CCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 222 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 222 ~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
+..+|..++||.||++||++|+|..|-|=++++|..+..++ +.++.++|.+
T Consensus 230 ----ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAW 280 (313)
T KOG1407|consen 230 ----LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAW 280 (313)
T ss_pred ----ccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEe
Confidence 34489999999999999999999999999999999998887 5666666653
No 87
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.76 E-value=1.4e-17 Score=131.72 Aligned_cols=155 Identities=15% Similarity=0.197 Sum_probs=130.1
Q ss_pred eccccceEeeeeecCCCCce--eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEE
Q 023642 100 SAADCCHMLSRYLPVNGPWP--VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL 177 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~--l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (279)
++.|.++.+.++-....... ...-..+|.++.|+|.|.+|+.|..-..+++||+.+.+|........+|.+.|+++.+
T Consensus 190 ~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Y 269 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRY 269 (430)
T ss_pred ccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEe
Confidence 46788888887765543332 3455789999999999999999999999999999999887665566789999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 178 SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 178 sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
++.+++.++++.||.|+|||--.+++... +...+. ...|.+..|+.+|+++++.+.|..+++|.+.
T Consensus 270 s~t~~lYvTaSkDG~IklwDGVS~rCv~t--~~~AH~------------gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 270 SSTGSLYVTASKDGAIKLWDGVSNRCVRT--IGNAHG------------GSEVCSAVFTKNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred cCCccEEEEeccCCcEEeeccccHHHHHH--HHhhcC------------CceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence 99999999999999999999888877432 222222 2378999999999999999999999999999
Q ss_pred CCeEEEEEeCC
Q 023642 258 ANKLSLRILAH 268 (279)
Q Consensus 258 ~~~~~~~~~~h 268 (279)
++++++.+.|-
T Consensus 336 t~R~l~~YtGA 346 (430)
T KOG0640|consen 336 TGRMLKEYTGA 346 (430)
T ss_pred CCceEEEEecC
Confidence 99999999864
No 88
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.76 E-value=2.3e-18 Score=144.22 Aligned_cols=135 Identities=23% Similarity=0.249 Sum_probs=105.3
Q ss_pred eeCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeEEeeeee---ccCCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 023642 120 VDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDIL---AKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (279)
.+||...++|.+|+|+. ..|++++.|+++||||+...+....++. ..+.+-+++.++|+|||+.||+|..||.|.+
T Consensus 264 TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~ 343 (641)
T KOG0772|consen 264 TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQI 343 (641)
T ss_pred cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceee
Confidence 47999999999999955 5789999999999999987643333222 2344557999999999999999999999999
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccc--cEEEEEEecCCCEEEEecCCCeEEEEECCC-CeEEEEEeC
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSF--GIFSLKFSTDGRELVAGSSDDCIYVYDLEA-NKLSLRILA 267 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~-~~~~~~~~~ 267 (279)
|+..+............ |.. .|+|++||+||++|++-+.|+++++||++. .+++....+
T Consensus 344 W~~~~~~v~p~~~vk~A-------------H~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tg 405 (641)
T KOG0772|consen 344 WDKGSRTVRPVMKVKDA-------------HLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTG 405 (641)
T ss_pred eecCCcccccceEeeec-------------cCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcC
Confidence 99866544332222221 443 899999999999999999999999999986 345554443
No 89
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=4.3e-17 Score=135.64 Aligned_cols=154 Identities=14% Similarity=0.116 Sum_probs=119.7
Q ss_pred ccccceEeeeeecCCCCceeeCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCe-EEeeeeeccCCCcceEEEEEC
Q 023642 101 AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLS 178 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd-~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~s 178 (279)
+.|+...+|++........+.+|++.|.|.+|+|- +..+++|+.||+|++||++... .+. .-+|..+|..+.+-
T Consensus 130 sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~----elnhg~pVe~vl~l 205 (487)
T KOG0310|consen 130 SDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV----ELNHGCPVESVLAL 205 (487)
T ss_pred CCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE----EecCCCceeeEEEc
Confidence 34444555555554443358999999999999995 5588999999999999998763 222 24788899999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 179 p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
|.|..|++++.. .+++||+.+|........ .|...|+|+.+..+++.|++++-|+.|++||+.+
T Consensus 206 psgs~iasAgGn-~vkVWDl~~G~qll~~~~---------------~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~ 269 (487)
T KOG0310|consen 206 PSGSLIASAGGN-SVKVWDLTTGGQLLTSMF---------------NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN 269 (487)
T ss_pred CCCCEEEEcCCC-eEEEEEecCCceehhhhh---------------cccceEEEEEeecCCceEeecccccceEEEEccc
Confidence 999999998875 799999996665322111 1666999999999999999999999999999888
Q ss_pred CeEEEEEeCCCcceeEE
Q 023642 259 NKLSLRILAHTVNIALW 275 (279)
Q Consensus 259 ~~~~~~~~~h~~~v~~v 275 (279)
-+.+..+. ..++|-++
T Consensus 270 ~Kvv~s~~-~~~pvLsi 285 (487)
T KOG0310|consen 270 YKVVHSWK-YPGPVLSI 285 (487)
T ss_pred eEEEEeee-cccceeeE
Confidence 88888776 34555544
No 90
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.75 E-value=6.6e-17 Score=140.90 Aligned_cols=177 Identities=16% Similarity=0.164 Sum_probs=144.9
Q ss_pred hhhhhccccCc-----cCCCCee---eccccceEeeeeecC-----CCCc-------eeeCCCCCeEEEEECCCCCEEEE
Q 023642 82 TVKMLAGREGN-----YSGRGRF---SAADCCHMLSRYLPV-----NGPW-------PVDQTTSRAYVSQFSADGSLFVA 141 (279)
Q Consensus 82 ~~~~~~~~~~~-----~~~~~~~---~~~d~~~~~~~~~~~-----~~~~-------~l~~h~~~V~~~~~spd~~~l~s 141 (279)
....+.+|+.. .+|++.. +++|.++..|++.-. .... .....++.|.|+.+||||++|+.
T Consensus 446 l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaV 525 (888)
T KOG0306|consen 446 LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAV 525 (888)
T ss_pred hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEE
Confidence 44556667664 3444442 788999999987532 2222 12345789999999999999999
Q ss_pred EeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeC
Q 023642 142 GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA 221 (279)
Q Consensus 142 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 221 (279)
+--|++|+||-+++-+.. ..+.+|.-||.++..+||++.+++||.|+.|+||-+.=|.+... |-+
T Consensus 526 sLLdnTVkVyflDtlKFf---lsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS-----------~fA- 590 (888)
T KOG0306|consen 526 SLLDNTVKVYFLDTLKFF---LSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKS-----------FFA- 590 (888)
T ss_pred EeccCeEEEEEecceeee---eeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhh-----------hhc-
Confidence 999999999999986543 34679999999999999999999999999999999988887432 222
Q ss_pred CCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 222 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 222 ~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
|...|.++.|-|....+.+++.|+.|+-||-..-++++++++|...|+|+..
T Consensus 591 ----HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav 642 (888)
T KOG0306|consen 591 ----HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAV 642 (888)
T ss_pred ----ccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEE
Confidence 4458999999999999999999999999999999999999999999999864
No 91
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=3.7e-18 Score=148.03 Aligned_cols=158 Identities=20% Similarity=0.193 Sum_probs=138.0
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
++.++.+.+|++.......+|.+|...+..++|+|-+.++++|+.|..+++||.+..-|... ..+|.+.|..+.|+|
T Consensus 88 gsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~---~~s~~~vv~~l~lsP 164 (825)
T KOG0267|consen 88 GSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT---YKSHTRVVDVLRLSP 164 (825)
T ss_pred cccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceee---ecCCcceeEEEeecC
Confidence 56788999999998888889999999999999999999999999999999999985546554 457888999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
+|++++.++.|.+++|||...|+...- |. +|.+.+.++.|+|..-.+++|+.|++|++||+++-
T Consensus 165 ~Gr~v~~g~ed~tvki~d~~agk~~~e-----------f~-----~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf 228 (825)
T KOG0267|consen 165 DGRWVASGGEDNTVKIWDLTAGKLSKE-----------FK-----SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF 228 (825)
T ss_pred CCceeeccCCcceeeeecccccccccc-----------cc-----cccccccccccCchhhhhccCCCCceeeeecccee
Confidence 999999999999999999998886432 22 25568999999999989999999999999999998
Q ss_pred eEEEEEeCCCcceeEEE
Q 023642 260 KLSLRILAHTVNIALWI 276 (279)
Q Consensus 260 ~~~~~~~~h~~~v~~v~ 276 (279)
+.+........+|.++.
T Consensus 229 e~I~s~~~~~~~v~~~~ 245 (825)
T KOG0267|consen 229 EVISSGKPETDGVRSLA 245 (825)
T ss_pred EEeeccCCccCCceeee
Confidence 88888887777777664
No 92
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=9.9e-17 Score=121.84 Aligned_cols=148 Identities=17% Similarity=0.248 Sum_probs=108.5
Q ss_pred eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC--eEEeeeeeccCCCcceEEEEECCC------------------
Q 023642 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG--WKIQKDILAKSLRWTVTDTSLSPD------------------ 180 (279)
Q Consensus 121 ~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~sp~------------------ 180 (279)
+.|.+.|+|.+|||+|.++++|++|++|++.-+... ........+.-|.+.|++++|-.+
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i 165 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI 165 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence 568999999999999999999999999998765432 211122233455555666665432
Q ss_pred ----------------------------CCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEE
Q 023642 181 ----------------------------QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFS 232 (279)
Q Consensus 181 ----------------------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 232 (279)
+-++++|+.|.+|++||++-..+...... +|...+ -.++.|.+
T Consensus 166 y~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~-------~~~~~g--lessavaa 236 (350)
T KOG0641|consen 166 YITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDN-------DFHDGG--LESSAVAA 236 (350)
T ss_pred EEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccC-------cccCCC--cccceeEE
Confidence 33667777788888888876555433222 111111 13458999
Q ss_pred EEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 233 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 233 ~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
++..|.|+.|++|-.|..-.+||++.+++++.+..|...|.||-.
T Consensus 237 v~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrf 281 (350)
T KOG0641|consen 237 VAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRF 281 (350)
T ss_pred EEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEe
Confidence 999999999999999999999999999999999999999999854
No 93
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4.1e-17 Score=139.85 Aligned_cols=159 Identities=18% Similarity=0.182 Sum_probs=135.2
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccC-CCcceEEEEEC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS-LRWTVTDTSLS 178 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~s 178 (279)
.+....+.+|+............+...|+++.|+++|++|++|..+|.|.|||....+.+.. ... |...|-+++|.
T Consensus 193 Valg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~---~~~~h~~rvg~laW~ 269 (484)
T KOG0305|consen 193 VALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRT---LRGSHASRVGSLAWN 269 (484)
T ss_pred EEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccc---ccCCcCceeEEEecc
Confidence 44566788888777665545555589999999999999999999999999999988766554 344 88899999997
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 179 p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
+..+.+|+.|+.|..+|++..+.... . -.+|.+.|..++|++|+.+||+|+.|+.+.|||...
T Consensus 270 --~~~lssGsr~~~I~~~dvR~~~~~~~-~--------------~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~ 332 (484)
T KOG0305|consen 270 --SSVLSSGSRDGKILNHDVRISQHVVS-T--------------LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS 332 (484)
T ss_pred --CceEEEecCCCcEEEEEEecchhhhh-h--------------hhcccceeeeeEECCCCCeeccCCCccceEeccCCC
Confidence 67899999999999999998765322 1 123778999999999999999999999999999998
Q ss_pred CeEEEEEeCCCcceeEEEee
Q 023642 259 NKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 259 ~~~~~~~~~h~~~v~~v~~~ 278 (279)
.++..++..|...|.++.+|
T Consensus 333 ~~p~~~~~~H~aAVKA~awc 352 (484)
T KOG0305|consen 333 PEPKFTFTEHTAAVKALAWC 352 (484)
T ss_pred ccccEEEeccceeeeEeeeC
Confidence 99999999999999999987
No 94
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=3.2e-17 Score=125.67 Aligned_cols=165 Identities=13% Similarity=0.161 Sum_probs=130.1
Q ss_pred eccccceEeeeeecCCC---CceeeCCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEE
Q 023642 100 SAADCCHMLSRYLPVNG---PWPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD 174 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~---~~~l~~h~~~V~~~~~sp--d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 174 (279)
.+.|+.+.+....+..+ ...|.||.++|..++|.. -|.+||+++.||+|.||.-..++ ..+......|...|.+
T Consensus 29 csSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~-w~k~~e~~~h~~SVNs 107 (299)
T KOG1332|consen 29 CSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR-WTKAYEHAAHSASVNS 107 (299)
T ss_pred ecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc-hhhhhhhhhhccccee
Confidence 56788888877766544 345899999999999975 89999999999999999988873 2333445789999999
Q ss_pred EEECCC--CCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC---C----------
Q 023642 175 TSLSPD--QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---G---------- 239 (279)
Q Consensus 175 ~~~sp~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---g---------- 239 (279)
++|.|. |-.|++++.||.|.|.+.++...-...+.. ..|...|++++|.|. |
T Consensus 108 V~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~-------------~aH~~GvnsVswapa~~~g~~~~~~~~~~ 174 (299)
T KOG1332|consen 108 VAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIV-------------FAHEIGVNSVSWAPASAPGSLVDQGPAAK 174 (299)
T ss_pred ecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhh-------------hccccccceeeecCcCCCccccccCcccc
Confidence 999996 457899999999999988765221111111 126678999999986 5
Q ss_pred -CEEEEecCCCeEEEEECCCCe--EEEEEeCCCcceeEEEee
Q 023642 240 -RELVAGSSDDCIYVYDLEANK--LSLRILAHTVNIALWITC 278 (279)
Q Consensus 240 -~~l~t~s~d~~i~vwd~~~~~--~~~~~~~h~~~v~~v~~~ 278 (279)
+.|++|+.|..|+||+...++ .-.+|++|.+.|+.|.+|
T Consensus 175 ~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwa 216 (299)
T KOG1332|consen 175 VKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWA 216 (299)
T ss_pred cceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhc
Confidence 569999999999999998764 446689999999988765
No 95
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.73 E-value=2.4e-17 Score=134.06 Aligned_cols=136 Identities=16% Similarity=0.183 Sum_probs=114.8
Q ss_pred eeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeE----EeeeeeccCCCcceEEEEECCCC-CEEEEEeCCCe
Q 023642 119 PVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWK----IQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPI 192 (279)
Q Consensus 119 ~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~ 192 (279)
.+.||+++|..++|+| +...+|+|+.|.+|.||.+..+-. ......+.+|...|--++|+|.. +.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4789999999999999 667889999999999999875421 11223467999999999999965 67899999999
Q ss_pred EEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcc
Q 023642 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVN 271 (279)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~ 271 (279)
|.+|++.+|+...... |...|++++|+.||.+|+|.+.|..|+|||.++++.+..-.+|.+.
T Consensus 156 v~iWnv~tgeali~l~-----------------hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~ 217 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-----------------HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA 217 (472)
T ss_pred EEEEeccCCceeeecC-----------------CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC
Confidence 9999999998643211 5568999999999999999999999999999999999988888753
No 96
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=3.3e-17 Score=143.14 Aligned_cols=161 Identities=13% Similarity=0.102 Sum_probs=131.5
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEEC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 178 (279)
++.|+++..|++.......++.+....|..++|+| .+..|+++...|.+.+||++...... ..+..|.++|.++.|+
T Consensus 152 GSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~--~k~~AH~GpV~c~nwh 229 (839)
T KOG0269|consen 152 GSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCE--KKLTAHNGPVLCLNWH 229 (839)
T ss_pred cCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHH--HHhhcccCceEEEeec
Confidence 57899999999999988889999999999999999 78899999999999999999764322 2367999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCE-EEEec--CCCeEEEEE
Q 023642 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE-LVAGS--SDDCIYVYD 255 (279)
Q Consensus 179 p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~-l~t~s--~d~~i~vwd 255 (279)
|++.+||+|+.|++|+|||..+++......+. ...++.+++|-|..++ |++++ .|-.|+|||
T Consensus 230 Pnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn---------------Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWD 294 (839)
T KOG0269|consen 230 PNREWLATGGRDKMVKIWDMTDSRAKPKHTIN---------------TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWD 294 (839)
T ss_pred CCCceeeecCCCccEEEEeccCCCccceeEEe---------------ecceeeeeeeccCccchhhhhhccccceEEEEe
Confidence 99999999999999999999876653322221 1238999999998664 66665 477899999
Q ss_pred CCCC-eEEEEEeCCCcceeEEEe
Q 023642 256 LEAN-KLSLRILAHTVNIALWIT 277 (279)
Q Consensus 256 ~~~~-~~~~~~~~h~~~v~~v~~ 277 (279)
++-. -+..++.-|...++.+.+
T Consensus 295 vrRPYIP~~t~~eH~~~vt~i~W 317 (839)
T KOG0269|consen 295 VRRPYIPYATFLEHTDSVTGIAW 317 (839)
T ss_pred eccccccceeeeccCccccceec
Confidence 9743 466888889888776654
No 97
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.73 E-value=6.5e-17 Score=140.94 Aligned_cols=148 Identities=15% Similarity=0.102 Sum_probs=126.5
Q ss_pred ccCCCCeee---ccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCC
Q 023642 92 NYSGRGRFS---AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL 168 (279)
Q Consensus 92 ~~~~~~~~~---~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 168 (279)
.++|+++|. --|.++.++.+.+..-...+.||.-||.|+.+|||++++++|+.|..|++|-++=|.|-.. +.+|
T Consensus 515 ~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS---~fAH 591 (888)
T KOG0306|consen 515 SVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKS---FFAH 591 (888)
T ss_pred EEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhh---hhcc
Confidence 468888873 3477777777666665566899999999999999999999999999999999999987654 5689
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC
Q 023642 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (279)
Q Consensus 169 ~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d 248 (279)
...|.++.|-|+...+++++.|+.++-||-..-+..... .+|...|+|++.+|+|.+++++|+|
T Consensus 592 dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L----------------~~H~~ev~cLav~~~G~~vvs~shD 655 (888)
T KOG0306|consen 592 DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL----------------DGHHSEVWCLAVSPNGSFVVSSSHD 655 (888)
T ss_pred cCceeEEEEcccceeEEEecCcceEEeechhhhhhheee----------------ccchheeeeeEEcCCCCeEEeccCC
Confidence 999999999999999999999999999998876653221 1377899999999999999999999
Q ss_pred CeEEEEECCC
Q 023642 249 DCIYVYDLEA 258 (279)
Q Consensus 249 ~~i~vwd~~~ 258 (279)
.+|++|....
T Consensus 656 ~sIRlwE~td 665 (888)
T KOG0306|consen 656 KSIRLWERTD 665 (888)
T ss_pred ceeEeeeccC
Confidence 9999999754
No 98
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.73 E-value=1.6e-16 Score=143.47 Aligned_cols=173 Identities=14% Similarity=0.129 Sum_probs=135.4
Q ss_pred ccCCCCee---eccccceEeeeeecC-------C-----------CCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPV-------N-----------GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRI 150 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~-------~-----------~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~i 150 (279)
.++++|++ ++.|+.+.+|...+. . ...++.+|+..|..++|+|++.+|++++.|++|.|
T Consensus 76 R~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsVii 155 (942)
T KOG0973|consen 76 RFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVII 155 (942)
T ss_pred EECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEE
Confidence 46777776 456667778877630 0 11247899999999999999999999999999999
Q ss_pred EEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccE
Q 023642 151 YDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGI 230 (279)
Q Consensus 151 wd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 230 (279)
|+..+.+.+.. +.+|.+.|..+.|.|-|+|||+-+.|+++++|++.+-...........+. .-....
T Consensus 156 wn~~tF~~~~v---l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~----------~~~T~f 222 (942)
T KOG0973|consen 156 WNAKTFELLKV---LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES----------PLTTFF 222 (942)
T ss_pred Eccccceeeee---eecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhC----------CCccee
Confidence 99999855543 67999999999999999999999999999999977644433322211111 122357
Q ss_pred EEEEEecCCCEEEEecC----CCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 231 FSLKFSTDGRELVAGSS----DDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 231 ~~~~~sp~g~~l~t~s~----d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
..+.|||||.+|++.-. -.++.|.+..+-+.-..|-||..++.++..
T Consensus 223 ~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrF 273 (942)
T KOG0973|consen 223 LRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRF 273 (942)
T ss_pred eecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEe
Confidence 89999999999998542 337999999888889999999999988764
No 99
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=2e-17 Score=142.05 Aligned_cols=170 Identities=12% Similarity=0.222 Sum_probs=137.3
Q ss_pred eccccceEeeeeecCCC------CceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe--EEeeeeeccCCCcc
Q 023642 100 SAADCCHMLSRYLPVNG------PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW--KIQKDILAKSLRWT 171 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~------~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~ 171 (279)
++.|+.++.|....... ...++.|.++|+.++..-+++.|++++.|-+|++|+...+. +.. .++.|..+
T Consensus 43 gGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~s---tir~H~DY 119 (735)
T KOG0308|consen 43 GGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMS---TIRTHKDY 119 (735)
T ss_pred cCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHh---hhhcccch
Confidence 56788899998765433 23478999999999999999999999999999999998763 333 36799999
Q ss_pred eEEEEE-CCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCe
Q 023642 172 VTDTSL-SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (279)
Q Consensus 172 v~~~~~-sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~ 250 (279)
|.++++ .++...+|+|+.|+.|++||+.++........... ..+... .|+...|++++..+.|..+++|+..+.
T Consensus 120 Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~----t~~sl~-sG~k~siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 120 VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNV----TVNSLG-SGPKDSIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred heeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccc----ccccCC-CCCccceeeeecCCcceEEEecCcccc
Confidence 999999 88889999999999999999998844111111110 111111 146679999999999999999999999
Q ss_pred EEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 251 IYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 251 i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
+++||-++++.+..++||+..|..+..
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~ 221 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLV 221 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEE
Confidence 999999999999999999999998864
No 100
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.72 E-value=1.1e-16 Score=144.43 Aligned_cols=153 Identities=18% Similarity=0.165 Sum_probs=123.4
Q ss_pred cccceEeeeeecCCC------------CceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC----C---------
Q 023642 102 ADCCHMLSRYLPVNG------------PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER----G--------- 156 (279)
Q Consensus 102 ~d~~~~~~~~~~~~~------------~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~----~--------- 156 (279)
.|+...+|+..+.-. .-+...|.+.|+|+.|+|||++||+|+.|+.|.||.... .
T Consensus 35 ~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~ 114 (942)
T KOG0973|consen 35 LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAK 114 (942)
T ss_pred ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCccccccccccc
Confidence 355556776654321 123678999999999999999999999999999999872 0
Q ss_pred --eEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEE
Q 023642 157 --WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK 234 (279)
Q Consensus 157 --~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 234 (279)
+.......+.+|...|.+++|+|++.+|++++.|++|.||+.++.+...... +|.+.|-.+.
T Consensus 115 ~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~----------------~H~s~VKGvs 178 (942)
T KOG0973|consen 115 NVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR----------------GHQSLVKGVS 178 (942)
T ss_pred ccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee----------------cccccccceE
Confidence 1122334568999999999999999999999999999999999986543322 3777999999
Q ss_pred EecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCc
Q 023642 235 FSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTV 270 (279)
Q Consensus 235 ~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~ 270 (279)
|.|-|+||++-+.|++|+||++.+-...+++.++..
T Consensus 179 ~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~ 214 (942)
T KOG0973|consen 179 WDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE 214 (942)
T ss_pred ECCccCeeeeecCCceEEEEEcccceeeEeeccchh
Confidence 999999999999999999999877777777776543
No 101
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.4e-16 Score=124.98 Aligned_cols=148 Identities=20% Similarity=0.212 Sum_probs=116.4
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeee
Q 023642 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL 206 (279)
Q Consensus 127 V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~ 206 (279)
..|+.|++.|.+||+|..||.|.|||+.+....+ .+.+|-.+|.+++||+||+.|++++.|..|.+||+..|.+...
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 7899999999999999999999999999875333 3568888999999999999999999999999999999987655
Q ss_pred eccccccceeEEeeCCC-----------------------------CC-ccccEEEEEEecCCCEEEEecCCCeEEEEEC
Q 023642 207 ANVTEIHDGLDFSAADD-----------------------------GG-YSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (279)
Q Consensus 207 ~~~~~~~~~~~~~~~~~-----------------------------~~-~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~ 256 (279)
..+.....++.|.+... .+ -.....+..|.+.|+++++|..-|.+.++|.
T Consensus 103 irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 103 IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 55555444444444333 00 1112223358888999999999999999999
Q ss_pred CCCeEEEEEeCCC-cceeEEEe
Q 023642 257 EANKLSLRILAHT-VNIALWIT 277 (279)
Q Consensus 257 ~~~~~~~~~~~h~-~~v~~v~~ 277 (279)
.+-+++..++-.. ..|.+++.
T Consensus 183 ~t~e~vas~rits~~~IK~I~~ 204 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIV 204 (405)
T ss_pred chheeeeeeeechheeeeEEEE
Confidence 9999999888655 56666553
No 102
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=4.5e-16 Score=138.43 Aligned_cols=160 Identities=15% Similarity=0.180 Sum_probs=127.3
Q ss_pred hhccccCccCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEee
Q 023642 85 MLAGREGNYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK 161 (279)
Q Consensus 85 ~~~~~~~~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~ 161 (279)
.+..+...++.+|.+ ++.|-.+.+-+.........+.+|.++|.++.|+|.+.+||+.+-||.|++||+.++.....
T Consensus 96 tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~t 175 (933)
T KOG1274|consen 96 TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKT 175 (933)
T ss_pred eccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhh
Confidence 344555667777765 45677788888888888889999999999999999999999999999999999998754332
Q ss_pred eeecc-----CCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEe
Q 023642 162 DILAK-----SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS 236 (279)
Q Consensus 162 ~~~~~-----~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 236 (279)
..... .....+..++|+|+|..++....|+.|++|+..+........... +...+.++.|+
T Consensus 176 l~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~--------------~ss~~~~~~ws 241 (933)
T KOG1274|consen 176 LTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL--------------SSSKFSDLQWS 241 (933)
T ss_pred cccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccc--------------cccceEEEEEc
Confidence 21111 113456889999999999999999999999999887644332211 34458999999
Q ss_pred cCCCEEEEecCCCeEEEEECCC
Q 023642 237 TDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 237 p~g~~l~t~s~d~~i~vwd~~~ 258 (279)
|+|+|||+++.++.|.|||+.+
T Consensus 242 PnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 242 PNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CCCcEEeeeccCCcEEEEeccc
Confidence 9999999999999999999985
No 103
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.70 E-value=1.7e-16 Score=133.17 Aligned_cols=159 Identities=16% Similarity=0.142 Sum_probs=118.8
Q ss_pred eccccceEeeeeecCCCCce-e-----eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCc--c
Q 023642 100 SAADCCHMLSRYLPVNGPWP-V-----DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW--T 171 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~-l-----~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~ 171 (279)
.+.|+++.+|++........ + .+-.-+++.++|+|||++||+|..||.|.+|+......-.....-..|.. .
T Consensus 287 ~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~ 366 (641)
T KOG0772|consen 287 CSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQD 366 (641)
T ss_pred ecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCc
Confidence 56789999999887654432 2 23456789999999999999999999999999854322112222345655 8
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC----
Q 023642 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---- 247 (279)
Q Consensus 172 v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~---- 247 (279)
|++++||+||++|++-+.|+++++||++..+.. +....... ....-+.++|||+.++++||..
T Consensus 367 Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp-L~~~tgL~------------t~~~~tdc~FSPd~kli~TGtS~~~~ 433 (641)
T KOG0772|consen 367 ITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP-LNVRTGLP------------TPFPGTDCCFSPDDKLILTGTSAPNG 433 (641)
T ss_pred eeEEEeccccchhhhccCCCceeeeeccccccc-hhhhcCCC------------ccCCCCccccCCCceEEEecccccCC
Confidence 999999999999999999999999999986542 11111111 2235678999999999999763
Q ss_pred --CCeEEEEECCCCeEEEEEeCCCcc
Q 023642 248 --DDCIYVYDLEANKLSLRILAHTVN 271 (279)
Q Consensus 248 --d~~i~vwd~~~~~~~~~~~~h~~~ 271 (279)
.+++++||..+-..++++.-....
T Consensus 434 ~~~g~L~f~d~~t~d~v~ki~i~~aS 459 (641)
T KOG0772|consen 434 MTAGTLFFFDRMTLDTVYKIDISTAS 459 (641)
T ss_pred CCCceEEEEeccceeeEEEecCCCce
Confidence 457999999999988888755433
No 104
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=4.2e-16 Score=123.84 Aligned_cols=138 Identities=15% Similarity=0.207 Sum_probs=99.5
Q ss_pred eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-----EEeeeee-----------------------------
Q 023642 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-----KIQKDIL----------------------------- 164 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~----------------------------- 164 (279)
.|++|.+.|++++|+.||+.|++++.|+.|++|+++.-. +++....
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 489999999999999999999999999999999987421 1110000
Q ss_pred ----------------------ccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeec-cccccceeEEeeC
Q 023642 165 ----------------------AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLAN-VTEIHDGLDFSAA 221 (279)
Q Consensus 165 ----------------------~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~ 221 (279)
...|.-.+..+.....+.+|++++.|..|.+|+++ |+...... ..........++.
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~ 239 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD 239 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC
Confidence 00222334445555556799999999999999999 55432222 1111112223333
Q ss_pred CC---------------------------------CCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 222 DD---------------------------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 222 ~~---------------------------------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
+. +||...|..++|+++.+.++|.|.||++++||..
T Consensus 240 GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 240 GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 32 7899999999999999999999999999999974
No 105
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.69 E-value=8.9e-16 Score=122.01 Aligned_cols=181 Identities=15% Similarity=0.130 Sum_probs=145.3
Q ss_pred chhhhhccccCcc--------CCCCeeeccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 023642 81 STVKMLAGREGNY--------SGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYD 152 (279)
Q Consensus 81 ~~~~~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd 152 (279)
..++.+.||..++ .|...-.++|.+..+|.+........+.||.+.|+++.|+|.+.++++++.|++-.||.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 3456666666543 22223367888999999998888888999999999999999999999999999999996
Q ss_pred c------CCC------------------------------eEE-eeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 023642 153 V------ERG------------------------------WKI-QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (279)
Q Consensus 153 ~------~~~------------------------------~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (279)
. ... ..+ .....+.+|.+.|.+..|-..|+.+++++.|.+..+
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl 298 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL 298 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence 2 110 000 111235688889999999999999999999999999
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC-eEEEEEeCCCcceeE
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTVNIAL 274 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~-~~~~~~~~h~~~v~~ 274 (279)
||+++++...... ||....+.++-+|..+++++++.|.+.++||++.. ..+..|+||...|++
T Consensus 299 wDVEtge~v~~Lt----------------GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS 362 (481)
T KOG0300|consen 299 WDVETGEVVNILT----------------GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTS 362 (481)
T ss_pred eeeccCceecccc----------------CcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeE
Confidence 9999999754332 36668888888999999999999999999999853 477899999999999
Q ss_pred EEe
Q 023642 275 WIT 277 (279)
Q Consensus 275 v~~ 277 (279)
++.
T Consensus 363 ~vF 365 (481)
T KOG0300|consen 363 VVF 365 (481)
T ss_pred EEE
Confidence 875
No 106
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.69 E-value=6.6e-16 Score=121.56 Aligned_cols=146 Identities=13% Similarity=0.135 Sum_probs=118.7
Q ss_pred CCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCe------------EEeeeeeccCCCcceEEEEECC-CC
Q 023642 116 GPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGW------------KIQKDILAKSLRWTVTDTSLSP-DQ 181 (279)
Q Consensus 116 ~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~------------~~~~~~~~~~~~~~v~~~~~sp-~~ 181 (279)
.......|.+.|+++.+.| .|+++++|+.||.|.+||+.... ++........|+..|..+.|-| |.
T Consensus 35 d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt 114 (397)
T KOG4283|consen 35 DKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT 114 (397)
T ss_pred CcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC
Confidence 3445677999999999998 88999999999999999997532 1111123356788899999999 56
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC---CCEEEEecCCCeEEEEECCC
Q 023642 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 182 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---g~~l~t~s~d~~i~vwd~~~ 258 (279)
-.+.+++.|.++++||+.+.+.....+. .+.|++-++||- ..++++|..|-.|++.|+.+
T Consensus 115 GmFtssSFDhtlKVWDtnTlQ~a~~F~m-----------------e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S 177 (397)
T KOG4283|consen 115 GMFTSSSFDHTLKVWDTNTLQEAVDFKM-----------------EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS 177 (397)
T ss_pred ceeecccccceEEEeecccceeeEEeec-----------------CceeehhhcChhhhcceEEEEecCCCcEEEEeccC
Confidence 6788899999999999999887544332 237888888883 55788888999999999999
Q ss_pred CeEEEEEeCCCcceeEEEee
Q 023642 259 NKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 259 ~~~~~~~~~h~~~v~~v~~~ 278 (279)
|.+.+++.||.+.|-+|-+|
T Consensus 178 Gs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 178 GSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred CcceeeeccccCceEEEEec
Confidence 99999999999999998776
No 107
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.68 E-value=1.4e-15 Score=131.62 Aligned_cols=186 Identities=13% Similarity=0.135 Sum_probs=138.6
Q ss_pred cccCCccccccccCCCCCcccchhhhhccccCccCCC-----Ce-e-eccccceEeeeeecCCCCceeeCCCCCeEEEEE
Q 023642 60 LKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGR-----GR-F-SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQF 132 (279)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~-~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~ 132 (279)
+..+..|..+..+......+. ..+.+|..+++.. +. + ++-|++.++|..-.. ...+.+|+..|.+++.
T Consensus 74 l~~g~~D~~i~v~~~~~~~P~---~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l--~~~l~gH~asVWAv~~ 148 (745)
T KOG0301|consen 74 LVVGGMDTTIIVFKLSQAEPL---YTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGEL--VYSLQGHTASVWAVAS 148 (745)
T ss_pred eEeecccceEEEEecCCCCch---hhhhccccceeeeecCCcCceEecccccceEEecchhh--hcccCCcchheeeeee
Confidence 334555555665555555444 5577777654322 22 2 466899999986543 3448999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccc
Q 023642 133 SADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEI 212 (279)
Q Consensus 133 spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 212 (279)
-|++ .++||+.|.+|++|.-. ++++ .+.+|.+.|+++++-|++ .+++++.||.|++|++. |++...
T Consensus 149 l~e~-~~vTgsaDKtIklWk~~--~~l~---tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~-ge~l~~------ 214 (745)
T KOG0301|consen 149 LPEN-TYVTGSADKTIKLWKGG--TLLK---TFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLD-GEVLLE------ 214 (745)
T ss_pred cCCC-cEEeccCcceeeeccCC--chhh---hhccchhheeeeEEecCC-CeEeecCCceEEEEecc-Cceeee------
Confidence 9988 89999999999999863 3343 367899999999998764 67799999999999994 444221
Q ss_pred cceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 213 HDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 213 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
. .||+.-|++++..+++..++++++|++++||+.. ++.+.+.-..-.|+++.
T Consensus 215 -----~-----~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~ 266 (745)
T KOG0301|consen 215 -----M-----HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAK 266 (745)
T ss_pred -----e-----eccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEE
Confidence 1 1377799999988889999999999999999986 78888876555666653
No 108
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.1e-14 Score=110.82 Aligned_cols=154 Identities=19% Similarity=0.227 Sum_probs=119.0
Q ss_pred ccccceEeeeeecCCCCceeeCCCCCeEEE-EECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeec-c--C-CCcceEEE
Q 023642 101 AADCCHMLSRYLPVNGPWPVDQTTSRAYVS-QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA-K--S-LRWTVTDT 175 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~-~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~--~-~~~~v~~~ 175 (279)
+.|+.+.+-+.-..++.+.+.+|++.|.++ .| ++-++++|++|.+|++||++-..++...-.. . + ..+.|.++
T Consensus 160 agdc~iy~tdc~~g~~~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav 237 (350)
T KOG0641|consen 160 AGDCKIYITDCGRGQGFHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAV 237 (350)
T ss_pred CCcceEEEeecCCCCcceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEE
Confidence 345566666666667777899999999887 36 5789999999999999999877666543211 1 1 12579999
Q ss_pred EECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEE
Q 023642 176 SLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 176 ~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd 255 (279)
+..|.|++|++|-.|..+.+||++.++.+... .+ |+..|.++.|+|...++++++.|..|++-|
T Consensus 238 ~vdpsgrll~sg~~dssc~lydirg~r~iq~f-----------~p-----hsadir~vrfsp~a~yllt~syd~~ikltd 301 (350)
T KOG0641|consen 238 AVDPSGRLLASGHADSSCMLYDIRGGRMIQRF-----------HP-----HSADIRCVRFSPGAHYLLTCSYDMKIKLTD 301 (350)
T ss_pred EECCCcceeeeccCCCceEEEEeeCCceeeee-----------CC-----CccceeEEEeCCCceEEEEecccceEEEee
Confidence 99999999999999999999999999875432 22 677999999999999999999999999999
Q ss_pred CCCC----eEEEEEeCCCcce
Q 023642 256 LEAN----KLSLRILAHTVNI 272 (279)
Q Consensus 256 ~~~~----~~~~~~~~h~~~v 272 (279)
+... -++.....|++.+
T Consensus 302 lqgdla~el~~~vv~ehkdk~ 322 (350)
T KOG0641|consen 302 LQGDLAHELPIMVVAEHKDKA 322 (350)
T ss_pred cccchhhcCceEEEEeccCce
Confidence 8631 1333444565543
No 109
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=9.4e-16 Score=121.57 Aligned_cols=127 Identities=16% Similarity=0.213 Sum_probs=107.1
Q ss_pred ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCC--EEEEEeCCCeEEE
Q 023642 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR--HLVYASMSPIVHI 195 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~d~~i~i 195 (279)
+.+..|.+.++++|+ ++.++|+|+.|.+|+|||+.+...+.. +..|.+.|+++.|.|.-. .|++|+.||.|.+
T Consensus 37 F~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~---ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 37 FAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGI---LLSHAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred ccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcc---eeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence 446889999999999 579999999999999999998765544 457889999999999765 8999999999999
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEE
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI 265 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~ 265 (279)
|++..-.+....+ +|.+.|+.++.+|.|++.++.+.|+.+++||+-.|+.-..+
T Consensus 112 w~~~~W~~~~slK----------------~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~ 165 (362)
T KOG0294|consen 112 WRVGSWELLKSLK----------------AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL 165 (362)
T ss_pred EEcCCeEEeeeec----------------ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceee
Confidence 9998765543322 27779999999999999999999999999999887644433
No 110
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.67 E-value=8.1e-15 Score=129.33 Aligned_cols=165 Identities=19% Similarity=0.222 Sum_probs=128.7
Q ss_pred cccceEeeeeecCCC-Cceee-----CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEE
Q 023642 102 ADCCHMLSRYLPVNG-PWPVD-----QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDT 175 (279)
Q Consensus 102 ~d~~~~~~~~~~~~~-~~~l~-----~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 175 (279)
.+.....|++..... .+++. .....+++++.++-|++.+.|...|.|-+|++.+|.....+.....|.++|+++
T Consensus 420 ~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gl 499 (910)
T KOG1539|consen 420 GKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGL 499 (910)
T ss_pred CcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEE
Confidence 344556677766444 33332 234789999999999999999999999999999996665543346899999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCC-------------------------CCccccE
Q 023642 176 SLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD-------------------------GGYSFGI 230 (279)
Q Consensus 176 ~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~v 230 (279)
+...-++.+++++.+|.+++||..+...............+.+....+ .||...|
T Consensus 500 a~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nri 579 (910)
T KOG1539|consen 500 AVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRI 579 (910)
T ss_pred EecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccce
Confidence 999989999999999999999998877544444333333332222211 6789999
Q ss_pred EEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 231 ~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
++++|||||++|++++.|++|++||+.++.++..+.
T Consensus 580 td~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~ 615 (910)
T KOG1539|consen 580 TDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL 615 (910)
T ss_pred eeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe
Confidence 999999999999999999999999999999887765
No 111
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.67 E-value=1.2e-15 Score=120.20 Aligned_cols=154 Identities=18% Similarity=0.200 Sum_probs=118.7
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECC---CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEE
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA---DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS 176 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp---d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 176 (279)
++-|..+.+|+..+.+... ....++.|++-++|| ...++|+|..|-+|++-|+.+|.+-+. +.+|.+.|.++.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~-~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~---LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAV-DFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT---LSGHRDGVLAVE 195 (397)
T ss_pred ccccceEEEeecccceeeE-EeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee---eccccCceEEEE
Confidence 4568899999876655433 345678899999999 355788999999999999999987665 679999999999
Q ss_pred ECCCCCE-EEEEeCCCeEEEEECCCCc-eeeeeccccccceeE-EeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEE
Q 023642 177 LSPDQRH-LVYASMSPIVHIVDVGSGT-MESLANVTEIHDGLD-FSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYV 253 (279)
Q Consensus 177 ~sp~~~~-l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~v 253 (279)
|+|...+ |++|+.||.|++||++... +.... ..+.+.. -.-..+..|.+.++.++|+.++.++++.+.|..+++
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~l---D~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVL---DQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV 272 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEe---ecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence 9998876 7899999999999998752 21111 1111100 000112348889999999999999999999999999
Q ss_pred EECCCCe
Q 023642 254 YDLEANK 260 (279)
Q Consensus 254 wd~~~~~ 260 (279)
|+...|+
T Consensus 273 wn~~~G~ 279 (397)
T KOG4283|consen 273 WNMESGR 279 (397)
T ss_pred eecccCc
Confidence 9998775
No 112
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.66 E-value=3.9e-16 Score=130.68 Aligned_cols=172 Identities=13% Similarity=0.132 Sum_probs=131.0
Q ss_pred ccCCCCee---eccccceEeeeeecCCCCce--eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeecc
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVNGPWP--VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK 166 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~~~~~--l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 166 (279)
.+.++|+- .+.-.++.+|++........ +..-.-..++++.+||.+..+++..||.|.|||+.....++. +.
T Consensus 472 kL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrq---fq 548 (705)
T KOG0639|consen 472 KLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQ---FQ 548 (705)
T ss_pred EecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeec---cc
Confidence 34555542 34455677888876544332 333345678899999999999999999999999998766665 68
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCC-----------------------
Q 023642 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD----------------------- 223 (279)
Q Consensus 167 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 223 (279)
+|...+.++.+++||..|.+|+.|.+||.||++++.......+......+.+++.++
T Consensus 549 GhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyq 628 (705)
T KOG0639|consen 549 GHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQ 628 (705)
T ss_pred CCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCcccee
Confidence 999999999999999999999999999999999987643333222222222333322
Q ss_pred -CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 224 -GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 224 -~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
.-|.+.|.++.|.+.|+++++.+.|+.+-.|...-|..+...+
T Consensus 629 lhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk 672 (705)
T KOG0639|consen 629 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK 672 (705)
T ss_pred ecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc
Confidence 2367889999999999999999999999999998887776665
No 113
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.66 E-value=1.5e-15 Score=131.53 Aligned_cols=150 Identities=16% Similarity=0.198 Sum_probs=127.6
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.+.|.++.+|..-...+-.++.+|.+.|.+++...++. +++||.|.++++|-...... .+.+|+..|+++++-|
T Consensus 77 g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~-----~l~gH~asVWAv~~l~ 150 (745)
T KOG0301|consen 77 GGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVY-----SLQGHTASVWAVASLP 150 (745)
T ss_pred ecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhc-----ccCCcchheeeeeecC
Confidence 67888999898888888889999999999999988888 99999999999998765322 2579999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
++ .+++|+.|++|++|.- ++... +|.+ |...|..+++-|++ .|++++.||.|+.|++ +|
T Consensus 151 e~-~~vTgsaDKtIklWk~--~~~l~-----------tf~g-----HtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~g 209 (745)
T KOG0301|consen 151 EN-TYVTGSADKTIKLWKG--GTLLK-----------TFSG-----HTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DG 209 (745)
T ss_pred CC-cEEeccCcceeeeccC--Cchhh-----------hhcc-----chhheeeeEEecCC-CeEeecCCceEEEEec-cC
Confidence 88 8889999999999976 33322 2333 66699999998775 4569999999999999 79
Q ss_pred eEEEEEeCCCcceeEEE
Q 023642 260 KLSLRILAHTVNIALWI 276 (279)
Q Consensus 260 ~~~~~~~~h~~~v~~v~ 276 (279)
+++.++.||+..|+++-
T Consensus 210 e~l~~~~ghtn~vYsis 226 (745)
T KOG0301|consen 210 EVLLEMHGHTNFVYSIS 226 (745)
T ss_pred ceeeeeeccceEEEEEE
Confidence 99999999999999875
No 114
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.65 E-value=5.5e-15 Score=122.48 Aligned_cols=182 Identities=12% Similarity=0.094 Sum_probs=127.8
Q ss_pred ccCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCC
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL 168 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 168 (279)
.++++|+| ++.|+.+.+|+..+.+....+.+|.+.|.+++|-.....|++++.|..|++|+++....+.. +.+|
T Consensus 209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vet---lyGH 285 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVET---LYGH 285 (479)
T ss_pred EEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHH---HhCC
Confidence 35777776 34566777999988888889999999999999999889999999999999999987644332 4577
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeC-------CC------------------
Q 023642 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA-------DD------------------ 223 (279)
Q Consensus 169 ~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~------------------ 223 (279)
.+.|.++....-++.+-.|+.|+++++|++......-........+.+.|-.+ .+
T Consensus 286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred ccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEee
Confidence 77777777666666666666677777776643222111111101111111111 00
Q ss_pred -----------CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC----eEEEEEeCCCcceeEEEe
Q 023642 224 -----------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN----KLSLRILAHTVNIALWIT 277 (279)
Q Consensus 224 -----------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~----~~~~~~~~h~~~v~~v~~ 277 (279)
..+..||++++..|...++++|+.+|+|++|.+..+ .++..+. -.+.||++..
T Consensus 366 ~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f 433 (479)
T KOG0299|consen 366 LAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAF 433 (479)
T ss_pred ccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEE
Confidence 123469999999999999999999999999999887 3555555 5677777763
No 115
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=6.7e-15 Score=116.91 Aligned_cols=151 Identities=14% Similarity=0.168 Sum_probs=118.3
Q ss_pred cccCccCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeee
Q 023642 88 GREGNYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL 164 (279)
Q Consensus 88 ~~~~~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 164 (279)
.....|++.|.+ +..++.+++|++.+......+.+|.-+|++++||+||++|++++.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 444567777766 5678999999999988888899999999999999999999999999999999999887665432
Q ss_pred ccCCCcceEEE-----------------------------------------------EECCCCCEEEEEeCCCeEEEEE
Q 023642 165 AKSLRWTVTDT-----------------------------------------------SLSPDQRHLVYASMSPIVHIVD 197 (279)
Q Consensus 165 ~~~~~~~v~~~-----------------------------------------------~~sp~~~~l~~~~~d~~i~i~d 197 (279)
+ .++|+.+ .|.+.|++|++|...|.+.++|
T Consensus 105 f---~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 105 F---DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD 181 (405)
T ss_pred c---cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence 1 1122222 2555577888888888888888
Q ss_pred CCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
..+.++....+... .+.|..+.|+-.|++|+.-+.|+.|++|+++
T Consensus 182 a~t~e~vas~rits---------------~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 182 AETLECVASFRITS---------------VQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred cchheeeeeeeech---------------heeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 88777654433321 1368889999999999999999999999986
No 116
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.64 E-value=4.8e-15 Score=121.11 Aligned_cols=152 Identities=19% Similarity=0.172 Sum_probs=115.6
Q ss_pred CCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCe------EEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 023642 124 TSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGW------KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (279)
Q Consensus 124 ~~~V~~~~~spd~~-~l~s~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~ 196 (279)
..+|+++.|.++.. +|++|+.|..|++|-+..+. .+.-...+..|...|+.+.|+|+|..|++|+.+|.+.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 47899999999666 99999999999999886532 333334567899999999999999999999999999999
Q ss_pred ECCCCceeeeec-cccccc-eeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeE
Q 023642 197 DVGSGTMESLAN-VTEIHD-GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIAL 274 (279)
Q Consensus 197 d~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~ 274 (279)
-...-....... .....+ ...... ..+|...|+.++|+|++.++++++.|.++++||+..|+.++.+.+|...|+.
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~--lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKV--LRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQG 170 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEE--ecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccce
Confidence 876311100000 000000 000000 1236679999999999999999999999999999999999999999998887
Q ss_pred EEe
Q 023642 275 WIT 277 (279)
Q Consensus 275 v~~ 277 (279)
+.+
T Consensus 171 vaw 173 (434)
T KOG1009|consen 171 VAW 173 (434)
T ss_pred eec
Confidence 754
No 117
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.64 E-value=2.6e-15 Score=121.14 Aligned_cols=143 Identities=19% Similarity=0.245 Sum_probs=110.7
Q ss_pred ceEeeeeecCCCCceeeCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeEEeeeee-------------------
Q 023642 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDIL------------------- 164 (279)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~------------------- 164 (279)
.+-+|+.....+...+.--.+.|.++.|+|-. ..|++++.|+.|.+||++++.++.+++.
T Consensus 168 ~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a 247 (433)
T KOG0268|consen 168 QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAA 247 (433)
T ss_pred eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeec
Confidence 34455555555555566677889999999955 5667788999999999998876655431
Q ss_pred --------------------ccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCC
Q 023642 165 --------------------AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG 224 (279)
Q Consensus 165 --------------------~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (279)
..+|.+.|.+++|+|.|+.+++||.|++|+||.+..+....+....+
T Consensus 248 ~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkR------------- 314 (433)
T KOG0268|consen 248 NEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKR------------- 314 (433)
T ss_pred cccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhh-------------
Confidence 23677789999999999999999999999999998876543322211
Q ss_pred CccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEE
Q 023642 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 262 (279)
Q Consensus 225 ~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~ 262 (279)
-+.|.++.||-|.+++++||.|+.|++|.....+.+
T Consensus 315 --Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 315 --MQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred --hheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 137999999999999999999999999998755433
No 118
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.64 E-value=1.2e-15 Score=126.24 Aligned_cols=142 Identities=18% Similarity=0.136 Sum_probs=121.5
Q ss_pred ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeee--------------ec-cCCCcceEEEEECCCCC
Q 023642 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI--------------LA-KSLRWTVTDTSLSPDQR 182 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------------~~-~~~~~~v~~~~~sp~~~ 182 (279)
..+..|.-++.+++++||..+.++++.+++|.-|++.++....-.+ .. ..|...+.+++.+|||+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 4567899999999999999999999999999999998885431111 11 26778899999999999
Q ss_pred EEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEE
Q 023642 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 262 (279)
Q Consensus 183 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~ 262 (279)
||++|+.|..|.|||..+.+.+... .+|.+.|.+++|-.....|++++.|++|++|++.....+
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~----------------~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v 279 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVF----------------KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV 279 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcc----------------cccccceeeeeeecCccceeeeecCCceEEEehhHhHHH
Confidence 9999999999999999998875432 137789999999877778999999999999999999999
Q ss_pred EEEeCCCcceeEE
Q 023642 263 LRILAHTVNIALW 275 (279)
Q Consensus 263 ~~~~~h~~~v~~v 275 (279)
.++.||++.|.++
T Consensus 280 etlyGHqd~v~~I 292 (479)
T KOG0299|consen 280 ETLYGHQDGVLGI 292 (479)
T ss_pred HHHhCCccceeee
Confidence 9999999988765
No 119
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.64 E-value=2.2e-15 Score=130.39 Aligned_cols=146 Identities=20% Similarity=0.256 Sum_probs=115.5
Q ss_pred ceeeCCCCCeEEEEECCCCCEEEEEeCCC-----cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCe
Q 023642 118 WPVDQTTSRAYVSQFSADGSLFVAGFQAS-----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~ 192 (279)
+.+.||.-.|++++.+|+++++|+++... .|++|+..+-.... .+..|.-.|+.++|||||++|++.+.|++
T Consensus 519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~---~L~~HsLTVT~l~FSpdg~~LLsvsRDRt 595 (764)
T KOG1063|consen 519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ---ELEGHSLTVTRLAFSPDGRYLLSVSRDRT 595 (764)
T ss_pred HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh---eecccceEEEEEEECCCCcEEEEeecCce
Confidence 45789999999999999999999997643 68999987764443 35689989999999999999999999999
Q ss_pred EEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC--eEEEEE--eCC
Q 023642 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN--KLSLRI--LAH 268 (279)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~--~~~~~~--~~h 268 (279)
+.+|........... |... +.|+-.|+++.|+|++.+|+|+|+|.+|+||..... +.+..+ ..+
T Consensus 596 ~sl~~~~~~~~~e~~----------fa~~--k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~ 663 (764)
T KOG1063|consen 596 VSLYEVQEDIKDEFR----------FACL--KAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKF 663 (764)
T ss_pred EEeeeeecccchhhh----------hccc--cccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhcc
Confidence 999988654432111 1111 237779999999999999999999999999999877 444442 346
Q ss_pred CcceeEEEee
Q 023642 269 TVNIALWITC 278 (279)
Q Consensus 269 ~~~v~~v~~~ 278 (279)
...|+++..+
T Consensus 664 ~~aVTAv~~~ 673 (764)
T KOG1063|consen 664 SLAVTAVAYL 673 (764)
T ss_pred CCceeeEEee
Confidence 7777776554
No 120
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.4e-15 Score=116.80 Aligned_cols=145 Identities=15% Similarity=0.069 Sum_probs=117.3
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC--CCCEEEEEeCCCeEEEEE
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVD 197 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~i~i~d 197 (279)
-++|.+.|-.+...--|++|++++.|++|+|+..+..........+.+|.+||+.++|.- -|.+||+++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 467888898888888899999999999999999987654344456789999999999954 799999999999999999
Q ss_pred CCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC--CCEEEEecCCCeEEEEECCCC--e-EEEEEeCCCcce
Q 023642 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEAN--K-LSLRILAHTVNI 272 (279)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~t~s~d~~i~vwd~~~~--~-~~~~~~~h~~~v 272 (279)
-.+++....... ..|...|++++|.|. |-.|++++.||.|.|.+.++. - .-.....|...|
T Consensus 87 e~~g~w~k~~e~--------------~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gv 152 (299)
T KOG1332|consen 87 EENGRWTKAYEH--------------AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGV 152 (299)
T ss_pred cCCCchhhhhhh--------------hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccc
Confidence 998864322111 127779999999986 678999999999999998764 2 234445899999
Q ss_pred eEEEee
Q 023642 273 ALWITC 278 (279)
Q Consensus 273 ~~v~~~ 278 (279)
++|.++
T Consensus 153 nsVswa 158 (299)
T KOG1332|consen 153 NSVSWA 158 (299)
T ss_pred ceeeec
Confidence 998764
No 121
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.64 E-value=6.7e-15 Score=119.36 Aligned_cols=196 Identities=13% Similarity=0.121 Sum_probs=130.0
Q ss_pred ccccccccCCCCCcccchhhhhccccCccCCCCee-eccccceEeeeeecCCCCceeeCCCCCeEEEEECCC---CCEEE
Q 023642 65 KEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRF-SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSAD---GSLFV 140 (279)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd---~~~l~ 140 (279)
+-+++..+.+..++......-+...-... +.--+ ++=|+...+|+. .+....++.||.++|.+++|.-. ...|+
T Consensus 86 eIEYv~~~~aP~pl~~~~hdDWVSsv~~~-~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fv 163 (423)
T KOG0313|consen 86 EIEYVEAITAPKPLQCFLHDDWVSSVKGA-SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFV 163 (423)
T ss_pred EEEEEEecCCCCccccccchhhhhhhccc-CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEE
Confidence 44666666666665542211111111111 11112 233566666654 23344568999999998887543 33699
Q ss_pred EEeCCCcEEEEEcCCCeEEe-eeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecccc--------
Q 023642 141 AGFQASQIRIYDVERGWKIQ-KDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTE-------- 211 (279)
Q Consensus 141 s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------- 211 (279)
+++.|.++++|-.+.+.... ......+|...|-+++..++|..+++|+.|.+++||+..+...........
T Consensus 164 sas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~ 243 (423)
T KOG0313|consen 164 SASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKR 243 (423)
T ss_pred EecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhh
Confidence 99999999999998774322 222346999999999999999999999999999999943322111111000
Q ss_pred ------ccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCC
Q 023642 212 ------IHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 212 ------~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h 268 (279)
...-..+ .||..+|.++.|++ ...+++++.|.+|++||+.++.+..++.+.
T Consensus 244 ~~~~~~r~P~vtl-----~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ 300 (423)
T KOG0313|consen 244 EKEGGTRTPLVTL-----EGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN 300 (423)
T ss_pred hhcccccCceEEe-----cccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC
Confidence 0000112 45888999999987 678889999999999999999988888753
No 122
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.63 E-value=5.5e-16 Score=123.19 Aligned_cols=156 Identities=13% Similarity=0.129 Sum_probs=122.2
Q ss_pred ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 023642 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d 197 (279)
..+.||.+.|..++.......+.+++.|.+.+||.+++|.|+.+ ..+|.+.|.+++|+|.+.++++++.|++..||.
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~---Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLAT---YTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeeccccceee---ecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 34789999999999888777899999999999999999999876 579999999999999999999999999999997
Q ss_pred CCCCceeeeeccccccce----------e-EE----eeCCC---------CCccccEEEEEEecCCCEEEEecCCCeEEE
Q 023642 198 VGSGTMESLANVTEIHDG----------L-DF----SAADD---------GGYSFGIFSLKFSTDGRELVAGSSDDCIYV 253 (279)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~----------~-~~----~~~~~---------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~v 253 (279)
..-.-..+.......+.+ . .. ..++. .+|.+.|.+..|-..|+.+++++.|.+..+
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl 298 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL 298 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence 321111100000000000 0 00 00000 568889999999999999999999999999
Q ss_pred EECCCCeEEEEEeCCCcceeEEE
Q 023642 254 YDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 254 wd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
||+++|+++..+.||....+.+.
T Consensus 299 wDVEtge~v~~LtGHd~ELtHcs 321 (481)
T KOG0300|consen 299 WDVETGEVVNILTGHDSELTHCS 321 (481)
T ss_pred eeeccCceeccccCcchhccccc
Confidence 99999999999999998776553
No 123
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=1.8e-14 Score=113.99 Aligned_cols=172 Identities=15% Similarity=0.084 Sum_probs=125.7
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
++-|+.+++++.-.. .......|..++.+++|.+ ...+++|+-||.|+.+|+.++.... ...|..+|.++.+++
T Consensus 31 ssWDgslrlYdv~~~-~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~ 104 (323)
T KOG1036|consen 31 SSWDGSLRLYDVPAN-SLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSY 104 (323)
T ss_pred EeccCcEEEEeccch-hhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCccee----eccCCCceEEEEeec
Confidence 566778887776444 3444567999999999997 5678999999999999999985433 468999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccc-------ccee-----------------------------------E
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEI-------HDGL-----------------------------------D 217 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-------~~~~-----------------------------------~ 217 (279)
-...+++|+.|++|++||.+............. -..+ .
T Consensus 105 ~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~ 184 (323)
T KOG1036|consen 105 EVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVA 184 (323)
T ss_pred cCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEE
Confidence 888999999999999999984222111100000 0000 0
Q ss_pred EeeCCC-----------------------------CCc---------cccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 218 FSAADD-----------------------------GGY---------SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 218 ~~~~~~-----------------------------~~~---------~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
+-+... +.| -.+|++++|+|-...|+||+.||.|-+||+.+.
T Consensus 185 ~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 185 LVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred EecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch
Confidence 000000 112 257899999999999999999999999999998
Q ss_pred eEEEEEeCCCcceeEEEe
Q 023642 260 KLSLRILAHTVNIALWIT 277 (279)
Q Consensus 260 ~~~~~~~~h~~~v~~v~~ 277 (279)
+.+..+......|.++..
T Consensus 265 Krl~q~~~~~~SI~slsf 282 (323)
T KOG1036|consen 265 KRLKQLAKYETSISSLSF 282 (323)
T ss_pred hhhhhccCCCCceEEEEe
Confidence 888888776666666554
No 124
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.3e-13 Score=109.48 Aligned_cols=178 Identities=17% Similarity=0.214 Sum_probs=141.1
Q ss_pred CccCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeC--CCcEEEEEcCCCeEEeeeeec
Q 023642 91 GNYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ--ASQIRIYDVERGWKIQKDILA 165 (279)
Q Consensus 91 ~~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~ 165 (279)
..|+.+|.+ .+.|+.+.+++........++..+.-.+..+.|......++.++. |.+|+.-++.+.+.++- +
T Consensus 20 l~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRY---F 96 (311)
T KOG1446|consen 20 LDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRY---F 96 (311)
T ss_pred EEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEE---c
Confidence 456677665 467889999999988888889999889999999877777776665 88999999999988775 6
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecccccc------ceeEEeeCCC----------------
Q 023642 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH------DGLDFSAADD---------------- 223 (279)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~------~~~~~~~~~~---------------- 223 (279)
.+|...|.+++.+|-+..+++++.|++|++||++..+++.+....... +++.|.....
T Consensus 97 ~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgP 176 (311)
T KOG1446|consen 97 PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGP 176 (311)
T ss_pred CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCC
Confidence 899999999999999999999999999999999977765444432221 1222211111
Q ss_pred -------CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcc
Q 023642 224 -------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVN 271 (279)
Q Consensus 224 -------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~ 271 (279)
.+-......+.|||||++++.+...+.+++.|.-+|....++.++...
T Consensus 177 F~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~ 231 (311)
T KOG1446|consen 177 FTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNA 231 (311)
T ss_pred ceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCC
Confidence 123456789999999999999999999999999999999999887654
No 125
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.62 E-value=8.1e-15 Score=123.75 Aligned_cols=138 Identities=20% Similarity=0.282 Sum_probs=108.5
Q ss_pred CCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCC--------------eEEeeee-----------eccCCCcceEEEEE
Q 023642 124 TSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERG--------------WKIQKDI-----------LAKSLRWTVTDTSL 177 (279)
Q Consensus 124 ~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~--------------~~~~~~~-----------~~~~~~~~v~~~~~ 177 (279)
...|+++.|-| +...|+.+-.+|.+.+||..-. ....... ...--++.|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 47899999999 5567778888999999976310 0000000 00011346889999
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 178 SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 178 sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
+|||++||+.+.||.+||||..+.+.....+. +-+...|++|||||+++++|++|.-|.||.+.
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS----------------YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKS----------------YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHh----------------hccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 99999999999999999999988765443321 33578999999999999999999999999999
Q ss_pred CCeEEEEEeCCCcceeEEEe
Q 023642 258 ANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 258 ~~~~~~~~~~h~~~v~~v~~ 277 (279)
.++.+..-+||+.+|+.|+.
T Consensus 363 erRVVARGqGHkSWVs~VaF 382 (636)
T KOG2394|consen 363 ERRVVARGQGHKSWVSVVAF 382 (636)
T ss_pred cceEEEeccccccceeeEee
Confidence 99999999999999998874
No 126
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.61 E-value=1.6e-13 Score=106.95 Aligned_cols=119 Identities=23% Similarity=0.278 Sum_probs=90.0
Q ss_pred CCCCeEEEEECCCCCEEEEE--eCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC---CCeEEEEE
Q 023642 123 TTSRAYVSQFSADGSLFVAG--FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVD 197 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~i~i~d 197 (279)
..++|.+++|+|+|+.|+.. ..+..|.+||++ ++.+.. +. ...+..+.|+|+|++|+.++. .|.+.+||
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~---~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd 131 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFS---FG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWD 131 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEe---ec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEE
Confidence 34579999999999987544 456799999997 434333 22 346788999999999998874 46799999
Q ss_pred CCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC------CCeEEEEECCCCeEEEEEe
Q 023642 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~------d~~i~vwd~~~~~~~~~~~ 266 (279)
+++.+..... ....+..++|+|||++|+++.. |..++||+.. |+.+.+..
T Consensus 132 ~~~~~~i~~~------------------~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 132 VRKKKKISTF------------------EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCCEEeecc------------------ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 9976654322 1125789999999999998763 7789999985 77666543
No 127
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.60 E-value=8.1e-15 Score=113.00 Aligned_cols=156 Identities=13% Similarity=0.166 Sum_probs=132.8
Q ss_pred CCceeeCCCCCeEEEEECC---CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCe
Q 023642 116 GPWPVDQTTSRAYVSQFSA---DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (279)
Q Consensus 116 ~~~~l~~h~~~V~~~~~sp---d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~ 192 (279)
.+.+-.+|+.+|-.++||| +|=+|++++.|+.-.+-+=++|..+.. +.+|.+.|++..+..+....++++.|-+
T Consensus 6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigt---feghkgavw~~~l~~na~~aasaaadft 82 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGT---FEGHKGAVWSATLNKNATRAASAAADFT 82 (334)
T ss_pred CceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEe---eeccCcceeeeecCchhhhhhhhcccch
Confidence 4556789999999999997 888999999999999988888877765 5799999999999999889999999999
Q ss_pred EEEEECCCCceeeeeccccccceeEEeeCCC--------------------------CCccccEEEEEEecCCCEEEEec
Q 023642 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADD--------------------------GGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
.++||..+|..........+...+.|+.+.. .+|++.|..+.|-...+.+++++
T Consensus 83 akvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSa 162 (334)
T KOG0278|consen 83 AKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSA 162 (334)
T ss_pred hhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeec
Confidence 9999999998876666666666677766654 67999999999988888888889
Q ss_pred CCCeEEEEECCCCeEEEEEeCCCcceeEE
Q 023642 247 SDDCIYVYDLEANKLSLRILAHTVNIALW 275 (279)
Q Consensus 247 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~v 275 (279)
.|++|++||.+++..++++.- ..+|+++
T Consensus 163 dd~tVRLWD~rTgt~v~sL~~-~s~VtSl 190 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSLEF-NSPVTSL 190 (334)
T ss_pred cCCceEEEEeccCcEEEEEec-CCCCcce
Confidence 999999999999999999973 3445543
No 128
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.60 E-value=1.9e-14 Score=116.23 Aligned_cols=162 Identities=10% Similarity=0.081 Sum_probs=120.5
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeee-----------------
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD----------------- 162 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~----------------- 162 (279)
++.|+.+.+|++........+..|.+.|..++++. ..+++++.|++|+.|-++.. .++.+
T Consensus 85 Gs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-p~~tilg~s~~~gIdh~~~~~~ 161 (433)
T KOG0268|consen 85 GSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-PLHTILGKSVYLGIDHHRKNSV 161 (433)
T ss_pred cccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC-cceeeecccccccccccccccc
Confidence 56799999999999888899999999999999987 67889999999999974421 11000
Q ss_pred ---------ee----------ccCCCcceEEEEECCCCC-EEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCC
Q 023642 163 ---------IL----------AKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (279)
Q Consensus 163 ---------~~----------~~~~~~~v~~~~~sp~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (279)
+. +.-....|.++.|+|-.. .|++|+.|+.|.|||++.+..............+.|.+..
T Consensus 162 FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPea 241 (433)
T KOG0268|consen 162 FATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEA 241 (433)
T ss_pred ccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccc
Confidence 00 000112478888888654 5778889999999999998874443333333344444421
Q ss_pred C--------------------------CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEE
Q 023642 223 D--------------------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR 264 (279)
Q Consensus 223 ~--------------------------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~ 264 (279)
. .+|.+.|.++.|||.|+.+++||.|.+|+||.+..+.....
T Consensus 242 fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdi 309 (433)
T KOG0268|consen 242 FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDI 309 (433)
T ss_pred cceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhh
Confidence 1 56888999999999999999999999999999987754433
No 129
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=2.7e-14 Score=113.69 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=113.2
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC---CC--eEEeeeeeccCCCcceEE
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVE---RG--WKIQKDILAKSLRWTVTD 174 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~---~~--~~~~~~~~~~~~~~~v~~ 174 (279)
.+.|..+.+|++. .+....+......-+..++||+|+++++++.--.|++|.+- .| +.+.+...+.+|...|..
T Consensus 205 as~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~ 283 (420)
T KOG2096|consen 205 ASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLA 283 (420)
T ss_pred ecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheee
Confidence 4567788888876 44444566666777788999999999999998999999873 23 344555678899999999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEECCC----Cceeeeec--------cccccceeEEeeCCC-------------------
Q 023642 175 TSLSPDQRHLVYASMSPIVHIVDVGS----GTMESLAN--------VTEIHDGLDFSAADD------------------- 223 (279)
Q Consensus 175 ~~~sp~~~~l~~~~~d~~i~i~d~~~----~~~~~~~~--------~~~~~~~~~~~~~~~------------------- 223 (279)
++|+|+.+.+++.+.||+++|||+.- ++-..+.+ ....+..+.+++.++
T Consensus 284 ~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~ 363 (420)
T KOG2096|consen 284 AAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGK 363 (420)
T ss_pred eeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCc
Confidence 99999999999999999999999742 11111111 111122233444333
Q ss_pred ------CCccccEEEEEEecCCCEEEEecCCCeEEEEE
Q 023642 224 ------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 224 ------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd 255 (279)
+-|...|.+++|+++|++++|++ |+.++++.
T Consensus 364 ~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 364 DYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred cchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 45888999999999999999987 67788776
No 130
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.60 E-value=3.1e-14 Score=116.63 Aligned_cols=138 Identities=17% Similarity=0.143 Sum_probs=109.6
Q ss_pred cccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeec-cCCCcceEEEEECCC
Q 023642 102 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA-KSLRWTVTDTSLSPD 180 (279)
Q Consensus 102 ~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~sp~ 180 (279)
.|+.+..|+.........+..+. .|+++..++++..|.+.+.|.++.+.|+++......+... .......+.+.|||+
T Consensus 320 ~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd 398 (459)
T KOG0288|consen 320 FDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD 398 (459)
T ss_pred cccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCC
Confidence 36677777776666666666665 9999999999999999999999999999987544432111 111224788999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEE
Q 023642 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY 254 (279)
Q Consensus 181 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vw 254 (279)
+.|+++|+.||.|+||++.++++......... ...|++++|+|.|..|++++.++.+.+|
T Consensus 399 ~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s--------------~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 399 GSYVAAGSADGSVYIWSVFTGKLEKVLSLSTS--------------NAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CceeeeccCCCcEEEEEccCceEEEEeccCCC--------------CcceEEEEEcCCCchhhcccCCcceEec
Confidence 99999999999999999999998655433211 1269999999999999999999999999
No 131
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.59 E-value=2.9e-14 Score=119.52 Aligned_cols=131 Identities=19% Similarity=0.235 Sum_probs=101.5
Q ss_pred EEEECCCCC-EEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCC-CEEEEEeCCCeEEEEECCCCceeee
Q 023642 129 VSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESL 206 (279)
Q Consensus 129 ~~~~spd~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~d~~~~~~~~~ 206 (279)
-+.++|..+ +|.+++.+|.|.+||+....+... ....|..+...++|+|.. .+|++.+.|+.|.+||.+.......
T Consensus 169 ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~--~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~ 246 (673)
T KOG4378|consen 169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH--ASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDR 246 (673)
T ss_pred EeecccccceeeEeeccCCeEEEEeccCCCcccc--hhhhccCCcCcceecCCccceEEEecccceEEEeecccccccce
Confidence 444555433 345567788888998876554332 346888999999999965 5678999999999999986554222
Q ss_pred eccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC-CeEEEEEeCCCcceeEEEee
Q 023642 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-NKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~-~~~~~~~~~h~~~v~~v~~~ 278 (279)
.. +..+...++|+++|.+|+.|...|.|..||++. ..++..+..|...|+++.++
T Consensus 247 l~-----------------y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq 302 (673)
T KOG4378|consen 247 LT-----------------YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQ 302 (673)
T ss_pred ee-----------------ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEee
Confidence 11 223789999999999999999999999999985 56899999999999998764
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=3.7e-14 Score=117.78 Aligned_cols=161 Identities=16% Similarity=0.126 Sum_probs=118.4
Q ss_pred ceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEE
Q 023642 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184 (279)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 184 (279)
.+.+|.+.+........-..++|.+++-+|+|.+|+.|+..+.|++|.+.+|..+.. ...|=..|+++.|+-||.+|
T Consensus 62 ~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v---~~aHYQ~ITcL~fs~dgs~i 138 (476)
T KOG0646|consen 62 LLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNV---LSAHYQSITCLKFSDDGSHI 138 (476)
T ss_pred cccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHH---HHhhccceeEEEEeCCCcEE
Confidence 344555554433332334578899999999999999999999999999999977654 46787889999999999999
Q ss_pred EEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC--CCEEEEecCCCeEEEEECCCCeEE
Q 023642 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANKLS 262 (279)
Q Consensus 185 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~t~s~d~~i~vwd~~~~~~~ 262 (279)
++++.||.|.+|++..---.. ... ....-..|.. |.-.|+++...+. ..+|+|+|.|.++++||+..|..+
T Consensus 139 iTgskDg~V~vW~l~~lv~a~-~~~-~~~p~~~f~~-----HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL 211 (476)
T KOG0646|consen 139 ITGSKDGAVLVWLLTDLVSAD-NDH-SVKPLHIFSD-----HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL 211 (476)
T ss_pred EecCCCccEEEEEEEeecccc-cCC-Cccceeeecc-----CcceeEEEEecCCCccceEEEecCCceEEEEEeccceee
Confidence 999999999999875421100 000 1111123333 5569999988764 458999999999999999999988
Q ss_pred EEEeCCCcceeEEE
Q 023642 263 LRILAHTVNIALWI 276 (279)
Q Consensus 263 ~~~~~h~~~v~~v~ 276 (279)
.++.- ...+.+++
T Consensus 212 lti~f-p~si~av~ 224 (476)
T KOG0646|consen 212 LTITF-PSSIKAVA 224 (476)
T ss_pred EEEec-CCcceeEE
Confidence 88863 34445443
No 133
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=5.2e-14 Score=115.66 Aligned_cols=147 Identities=22% Similarity=0.275 Sum_probs=112.3
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeee
Q 023642 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (279)
Q Consensus 128 ~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 207 (279)
.+++|+++|..+++|+.||++|+|+..+...+.. ...|...|.++.|+|||++|++-+.| ..+||++.++......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~---e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILE---EIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhh---hHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 7899999999999999999999999776654433 46788889999999999999999999 8999999988332111
Q ss_pred c---cccccceeEEeeCCC------------------------CC-----------ccccEEEEEEecCCCEEEEecCCC
Q 023642 208 N---VTEIHDGLDFSAADD------------------------GG-----------YSFGIFSLKFSTDGRELVAGSSDD 249 (279)
Q Consensus 208 ~---~~~~~~~~~~~~~~~------------------------~~-----------~~~~v~~~~~sp~g~~l~t~s~d~ 249 (279)
. .......+.|..+.. .+ -...|++++.++||++++.|+.||
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 1 000011112222110 00 123689999999999999999999
Q ss_pred eEEEEECCCCeEEEEEe-CCCcceeEEEee
Q 023642 250 CIYVYDLEANKLSLRIL-AHTVNIALWITC 278 (279)
Q Consensus 250 ~i~vwd~~~~~~~~~~~-~h~~~v~~v~~~ 278 (279)
.|-|++..+-+.++.++ .|...|+.|..|
T Consensus 304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~ 333 (398)
T KOG0771|consen 304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFS 333 (398)
T ss_pred cEEEEEeceeeeeEeehhhheeeeeeEEEc
Confidence 99999999988888886 798888887654
No 134
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.4e-13 Score=119.09 Aligned_cols=173 Identities=14% Similarity=0.178 Sum_probs=136.9
Q ss_pred CCCee--eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcce
Q 023642 95 GRGRF--SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTV 172 (279)
Q Consensus 95 ~~~~~--~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 172 (279)
..+++ .+.++.+.-|++........+....+.|.+++.+|.+..++.|+.||.+..++...+...... .+...++.|
T Consensus 79 e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r-~l~rq~sRv 157 (691)
T KOG2048|consen 79 EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR-SLMRQKSRV 157 (691)
T ss_pred cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe-ecccccceE
Confidence 34554 345778889999998888888889999999999999999999999998877887777554443 334446789
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEE
Q 023642 173 TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 252 (279)
Q Consensus 173 ~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~ 252 (279)
.+++|+|++..|++|+.||.|++||+..+....+....- .+ .. ++-.-.|+++.|-.++ .+++|...|+|.
T Consensus 158 Lslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~--d~--l~----k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~ 228 (691)
T KOG2048|consen 158 LSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQL--DR--LS----KREPTIVWSVLFLRDS-TIASGDSAGTVT 228 (691)
T ss_pred EEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecc--cc--cc----cCCceEEEEEEEeecC-cEEEecCCceEE
Confidence 999999999999999999999999999988754222110 00 00 0122368888888555 678999999999
Q ss_pred EEECCCCeEEEEEeCCCcceeEEEe
Q 023642 253 VYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 253 vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
+||...+..++.+..|...|.++..
T Consensus 229 FWd~~~gTLiqS~~~h~adVl~Lav 253 (691)
T KOG2048|consen 229 FWDSIFGTLIQSHSCHDADVLALAV 253 (691)
T ss_pred EEcccCcchhhhhhhhhcceeEEEE
Confidence 9999999999999999999999875
No 135
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.59 E-value=1.4e-14 Score=119.70 Aligned_cols=138 Identities=13% Similarity=0.206 Sum_probs=112.0
Q ss_pred eCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCC-CCEEEEEeCCCeEEEEEC
Q 023642 121 DQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDV 198 (279)
Q Consensus 121 ~~h~~~V~~~~~spd-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~i~d~ 198 (279)
.+|++.|.+++|+.. .+.||+|+.|.+|++||+.++++... ...|.+.|.+++|+|. ..+|++|+.|+++.+.|.
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s---~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~ 316 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSS---ITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDC 316 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCccee---hhhcCCceeEEEecCCCceEEEeccccceEEeeec
Confidence 369999999999984 56789999999999999999988665 3478889999999995 567999999999999999
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCC-EEEEecCCCeEEEEECCC-CeEEEEEeCCCcceeEEE
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEA-NKLSLRILAHTVNIALWI 276 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~t~s~d~~i~vwd~~~-~~~~~~~~~h~~~v~~v~ 276 (279)
+....... .|.- .+.|-.++|.|... .++++..||+|+-+|+|. ++++.++.+|.++|.++.
T Consensus 317 R~~~~s~~----------~wk~------~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~ 380 (463)
T KOG0270|consen 317 RDPSNSGK----------EWKF------DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLS 380 (463)
T ss_pred cCccccCc----------eEEe------ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEE
Confidence 95222111 1111 13789999998755 566778899999999997 589999999999999875
Q ss_pred e
Q 023642 277 T 277 (279)
Q Consensus 277 ~ 277 (279)
.
T Consensus 381 ~ 381 (463)
T KOG0270|consen 381 V 381 (463)
T ss_pred e
Confidence 4
No 136
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.58 E-value=2.2e-14 Score=117.26 Aligned_cols=146 Identities=17% Similarity=0.188 Sum_probs=118.8
Q ss_pred eccccceEeeeeecCCCCc---------eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC--------C-----Ce
Q 023642 100 SAADCCHMLSRYLPVNGPW---------PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVE--------R-----GW 157 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~---------~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~--------~-----~~ 157 (279)
.+.|..+++|.+....... .|..|...|+++.|+|+|.+|++|+.+|.|.+|-.. + .+
T Consensus 32 ~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke 111 (434)
T KOG1009|consen 32 AGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKE 111 (434)
T ss_pred ccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCcc
Confidence 5678889999887654332 368999999999999999999999999999999765 2 21
Q ss_pred EEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEec
Q 023642 158 KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST 237 (279)
Q Consensus 158 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 237 (279)
.......+++|...|..++|+||+.++++++.|..+++||+..|....... .|...+..++|.|
T Consensus 112 ~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~----------------dh~~yvqgvawDp 175 (434)
T KOG1009|consen 112 KWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD----------------DHEHYVQGVAWDP 175 (434)
T ss_pred ceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc----------------ccccccceeecch
Confidence 122223467899999999999999999999999999999999998754332 2666899999999
Q ss_pred CCCEEEEecCCCeEEEEECCCCeE
Q 023642 238 DGRELVAGSSDDCIYVYDLEANKL 261 (279)
Q Consensus 238 ~g~~l~t~s~d~~i~vwd~~~~~~ 261 (279)
-++++++-+.|...+++.+...+.
T Consensus 176 l~qyv~s~s~dr~~~~~~~~~~~~ 199 (434)
T KOG1009|consen 176 LNQYVASKSSDRHPEGFSAKLKQV 199 (434)
T ss_pred hhhhhhhhccCcccceeeeeeeee
Confidence 999999999998788887765443
No 137
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.58 E-value=2.8e-14 Score=124.28 Aligned_cols=171 Identities=15% Similarity=0.198 Sum_probs=133.9
Q ss_pred ccCCCCeee-ccc--cceEeeeeecCCCCceeeCCCCCeEEEEECC---CCCEEEEEeCCCcEEEEEcCCCeEEeeeeec
Q 023642 92 NYSGRGRFS-AAD--CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA---DGSLFVAGFQASQIRIYDVERGWKIQKDILA 165 (279)
Q Consensus 92 ~~~~~~~~~-~~d--~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp---d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 165 (279)
.++++|+.. +.| +.+.++++........++.|...|.|+.+|. ..++||+++.|.-|+|||+...-.+.. .+
T Consensus 466 ~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~q--tl 543 (1080)
T KOG1408|consen 466 AVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQ--TL 543 (1080)
T ss_pred EECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhh--hh
Confidence 467777763 333 3577888887777788999999999999995 457899999999999999875311110 11
Q ss_pred cCCCc-------------------------------------------------ceEEEEECCCCCEEEEEeCCCeEEEE
Q 023642 166 KSLRW-------------------------------------------------TVTDTSLSPDQRHLVYASMSPIVHIV 196 (279)
Q Consensus 166 ~~~~~-------------------------------------------------~v~~~~~sp~~~~l~~~~~d~~i~i~ 196 (279)
.+|.. .+.+++..|..+++++++.|+.|+||
T Consensus 544 d~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif 623 (1080)
T KOG1408|consen 544 DGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIF 623 (1080)
T ss_pred cccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEE
Confidence 22222 45667777777789999999999999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
|+.+++.....+ +..+ |.+....+...|.|.|+++.+.|+++.++|.-+|+|+.++.||...|+.+.
T Consensus 624 ~i~sgKq~k~FK-----------gs~~--~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~k 690 (1080)
T KOG1408|consen 624 DIESGKQVKSFK-----------GSRD--HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVK 690 (1080)
T ss_pred eccccceeeeec-----------cccc--CCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeee
Confidence 999998865443 2222 556888999999999999999999999999999999999999999998876
Q ss_pred e
Q 023642 277 T 277 (279)
Q Consensus 277 ~ 277 (279)
.
T Consensus 691 F 691 (1080)
T KOG1408|consen 691 F 691 (1080)
T ss_pred e
Confidence 4
No 138
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.57 E-value=1.3e-13 Score=121.93 Aligned_cols=140 Identities=19% Similarity=0.138 Sum_probs=109.4
Q ss_pred cccceEeeeeecCCCCcee---eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeee----------------
Q 023642 102 ADCCHMLSRYLPVNGPWPV---DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD---------------- 162 (279)
Q Consensus 102 ~d~~~~~~~~~~~~~~~~l---~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~---------------- 162 (279)
..+.+-+.++...-....+ ..|..+|++++...-++.+++++.+|-+++||......+...
T Consensus 468 S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~ 547 (910)
T KOG1539|consen 468 SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD 547 (910)
T ss_pred cCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhh
Confidence 3444444554443333334 589999999999999999999999999999999865322111
Q ss_pred ----------------------eeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEee
Q 023642 163 ----------------------ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSA 220 (279)
Q Consensus 163 ----------------------~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 220 (279)
..+.+|...|++++|||||++|++++.|++|++||+.++.++-.....
T Consensus 548 l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd---------- 617 (910)
T KOG1539|consen 548 LLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD---------- 617 (910)
T ss_pred hhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC----------
Confidence 023489999999999999999999999999999999999986544322
Q ss_pred CCCCCccccEEEEEEecCCCEEEEecCC-CeEEEEECCC
Q 023642 221 ADDGGYSFGIFSLKFSTDGRELVAGSSD-DCIYVYDLEA 258 (279)
Q Consensus 221 ~~~~~~~~~v~~~~~sp~g~~l~t~s~d-~~i~vwd~~~ 258 (279)
.++.++.|+|+|.+|||...| .-|++|-=++
T Consensus 618 -------~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 618 -------SPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred -------CcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 278999999999999999988 5799997543
No 139
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=5.1e-14 Score=119.51 Aligned_cols=171 Identities=15% Similarity=0.103 Sum_probs=126.5
Q ss_pred eccccceEeeeee---cCC-----CCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-------eEEeeeee
Q 023642 100 SAADCCHMLSRYL---PVN-----GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-------WKIQKDIL 164 (279)
Q Consensus 100 ~~~d~~~~~~~~~---~~~-----~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~ 164 (279)
.+.++.+.+|++. +.. ..+++.+|.++|.|+++.+++..+++|+.||+|+.|++... ........
T Consensus 312 ~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~ 391 (577)
T KOG0642|consen 312 ASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGT 391 (577)
T ss_pred eccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccc
Confidence 5678888889982 221 22568999999999999999999999999999999965421 11112224
Q ss_pred ccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecccc--ccceeEEeeCC--------------------
Q 023642 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTE--IHDGLDFSAAD-------------------- 222 (279)
Q Consensus 165 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~-------------------- 222 (279)
+.+|.+.|+.+++|+....|++++.||++++|+.............. .+..+++....
T Consensus 392 l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev 471 (577)
T KOG0642|consen 392 LLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEV 471 (577)
T ss_pred eeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhh
Confidence 57999999999999999999999999999999987655411111000 00011111110
Q ss_pred --------------------------------------C-----------------CCccccEEEEEEecCCCEEEEecC
Q 023642 223 --------------------------------------D-----------------GGYSFGIFSLKFSTDGRELVAGSS 247 (279)
Q Consensus 223 --------------------------------------~-----------------~~~~~~v~~~~~sp~g~~l~t~s~ 247 (279)
+ ..|...++++++.|+|.+|++++.
T Consensus 472 ~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~ 551 (577)
T KOG0642|consen 472 VSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSH 551 (577)
T ss_pred hhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecC
Confidence 0 336778899999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEeCCCc
Q 023642 248 DDCIYVYDLEANKLSLRILAHTV 270 (279)
Q Consensus 248 d~~i~vwd~~~~~~~~~~~~h~~ 270 (279)
|+.+++|.+....+++....|..
T Consensus 552 d~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 552 DGSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred Cceeehhhccchheeeccccccc
Confidence 99999999998888888877754
No 140
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.57 E-value=9.6e-14 Score=121.06 Aligned_cols=183 Identities=21% Similarity=0.278 Sum_probs=135.6
Q ss_pred hccccCCccccccccCCCCCcccchhhhhccccCcc-----CCCC----eeeccccceEeeeeec-CCCCceeeCC----
Q 023642 58 TKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNY-----SGRG----RFSAADCCHMLSRYLP-VNGPWPVDQT---- 123 (279)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~~d~~~~~~~~~~-~~~~~~l~~h---- 123 (279)
+-|++...+..+.++...+.+.+ .+.+.+|...+ ...| .++...+..+..+... ......+..|
T Consensus 517 kLLASasrdRlIHV~Dv~rny~l--~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~ 594 (1080)
T KOG1408|consen 517 KLLASASRDRLIHVYDVKRNYDL--VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTL 594 (1080)
T ss_pred HhhhhccCCceEEEEecccccch--hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccccc
Confidence 33566677777777766555443 45566655432 2222 2232223333333333 2223333333
Q ss_pred -CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 023642 124 -TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (279)
Q Consensus 124 -~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~ 202 (279)
...++.+++.|..++++++++|..|+|||+..++..+.+.-.++|++....+...|.|.||++...|+++.++|..+|+
T Consensus 595 ~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgE 674 (1080)
T KOG1408|consen 595 SKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGE 674 (1080)
T ss_pred ccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccch
Confidence 3568999999999999999999999999999998887776677888889999999999999999999999999999999
Q ss_pred eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
+.... .||...|+.+.|.+|.++|++.+.|++|+||.+..
T Consensus 675 cvA~m----------------~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 675 CVAQM----------------TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhhhh----------------cCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 85321 14777999999999999999999999999999864
No 141
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.57 E-value=2.9e-14 Score=118.18 Aligned_cols=161 Identities=18% Similarity=0.149 Sum_probs=116.4
Q ss_pred ceeeCCCCCeEEEEECCCC--CEEEEEeCCCcEEEEEcCCC-eEEeeeeeccCCCcceEEEEECCC-CCEEEEEeCCCeE
Q 023642 118 WPVDQTTSRAYVSQFSADG--SLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIV 193 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~--~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i 193 (279)
....-+..+|++++|+|.. +++++|..-|+|-+||+.+. +....+..+..|.++|.++.|+|. -..+++.|.||+|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 3456789999999999954 57889999999999999632 233345567899999999999994 4679999999999
Q ss_pred EEEECCCCceeeeeccccc---cceeEEeeCCC--------------------------CCccccEEEEEEecCCC-EEE
Q 023642 194 HIVDVGSGTMESLANVTEI---HDGLDFSAADD--------------------------GGYSFGIFSLKFSTDGR-ELV 243 (279)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~--------------------------~~~~~~v~~~~~sp~g~-~l~ 243 (279)
++-|++++....+...... ...+.|..... .-|...|.+++++|..+ +|+
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA 339 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee
Confidence 9999987654322222110 01111111111 23677999999999765 588
Q ss_pred EecCCCeEEEEECCCC--e--EEEEEeCCCcceeEEEee
Q 023642 244 AGSSDDCIYVYDLEAN--K--LSLRILAHTVNIALWITC 278 (279)
Q Consensus 244 t~s~d~~i~vwd~~~~--~--~~~~~~~h~~~v~~v~~~ 278 (279)
|+|.|++++|||++.- + ++.....|...|+++..+
T Consensus 340 T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFS 378 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFS 378 (498)
T ss_pred ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEc
Confidence 9999999999999852 2 344455699999887653
No 142
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.57 E-value=1.3e-14 Score=124.78 Aligned_cols=121 Identities=17% Similarity=0.238 Sum_probs=99.4
Q ss_pred CCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEE----eeeeeccCCCcceEEEEECCC-CCEEEEEeCCCeEEEEE
Q 023642 124 TSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKI----QKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVD 197 (279)
Q Consensus 124 ~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~i~d 197 (279)
...|+.++|.| |...|+.++.||.|++|.+..+-.. .....+..|...|.++.|+|- ...|++++.|-+|++||
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 56799999999 8899999999999999998754111 011234678889999999994 56899999999999999
Q ss_pred CCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCe
Q 023642 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 260 (279)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~ 260 (279)
++++..... +. +|...|+.++|||||+.+++.+.|++|+||+-++++
T Consensus 707 l~~~~~~~~-----------l~-----gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 707 LANAKLYSR-----------LV-----GHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred hhhhhhhhe-----------ec-----cCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence 999876432 22 367799999999999999999999999999987654
No 143
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.56 E-value=3.2e-14 Score=113.56 Aligned_cols=94 Identities=10% Similarity=0.069 Sum_probs=81.8
Q ss_pred EeeeeecCCCCceeeCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEE
Q 023642 107 MLSRYLPVNGPWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV 185 (279)
Q Consensus 107 ~~~~~~~~~~~~~l~~h~~~V~~~~~spd~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 185 (279)
.+.++...+-...+.+|...|+.+.+.|+. +++++++.|..||+|++.+..|+..+--..+|.+.|.++.|+++|.+|+
T Consensus 118 rVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ 197 (385)
T KOG1034|consen 118 RVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIA 197 (385)
T ss_pred EEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeee
Confidence 334444444445589999999999999954 7889999999999999999999888777789999999999999999999
Q ss_pred EEeCCCeEEEEECCC
Q 023642 186 YASMSPIVHIVDVGS 200 (279)
Q Consensus 186 ~~~~d~~i~i~d~~~ 200 (279)
+++.|.++++|++..
T Consensus 198 ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 198 SCGMDHSLKLWRLNV 212 (385)
T ss_pred ccCCcceEEEEecCh
Confidence 999999999999974
No 144
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.56 E-value=2.3e-14 Score=111.31 Aligned_cols=139 Identities=14% Similarity=0.138 Sum_probs=110.1
Q ss_pred ccccceEeeeeecCC----------CCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC--CeEEeeeeeccCC
Q 023642 101 AADCCHMLSRYLPVN----------GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER--GWKIQKDILAKSL 168 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~----------~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~ 168 (279)
-.++.+..|++.... .......|.++|.++.+.+.-..=++|+.+.++..|.++. +.+.........+
T Consensus 172 yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn 251 (323)
T KOG0322|consen 172 YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN 251 (323)
T ss_pred ccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecC
Confidence 356677888776542 1223578999999999998777778899999999998864 3332222222233
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC
Q 023642 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (279)
Q Consensus 169 ~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d 248 (279)
. .|..+..-||++.+|+++.|+.||+|..++.....+.+. |+..|++++|+|+...+|.++.|
T Consensus 252 p-Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky----------------Hsagvn~vAfspd~~lmAaaskD 314 (323)
T KOG0322|consen 252 P-GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY----------------HSAGVNAVAFSPDCELMAAASKD 314 (323)
T ss_pred C-CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh----------------hhcceeEEEeCCCCchhhhccCC
Confidence 3 488999999999999999999999999999887665544 77899999999999999999999
Q ss_pred CeEEEEEC
Q 023642 249 DCIYVYDL 256 (279)
Q Consensus 249 ~~i~vwd~ 256 (279)
.+|.+|++
T Consensus 315 ~rISLWkL 322 (323)
T KOG0322|consen 315 ARISLWKL 322 (323)
T ss_pred ceEEeeec
Confidence 99999986
No 145
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=1.8e-13 Score=108.35 Aligned_cols=122 Identities=17% Similarity=0.201 Sum_probs=102.1
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~ 202 (279)
..+.|+++.|+|.++.|+.++.||.+++||........+ -.|..++.+++|.+ ...+++|+.||.|+++|+.++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~----~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK----FKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh----eecCCceeeeeccC-CceEEEeccCceEEEEEecCCc
Confidence 468899999999999999999999999999987743332 46778999999987 5688999999999999999988
Q ss_pred eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
...+.. |...|.++.+++-...+++||.|++|++||.+...++.++.
T Consensus 87 ~~~igt-----------------h~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d 133 (323)
T KOG1036|consen 87 EDQIGT-----------------HDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD 133 (323)
T ss_pred ceeecc-----------------CCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc
Confidence 644322 66699999999988889999999999999999655544444
No 146
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.54 E-value=6.7e-14 Score=117.52 Aligned_cols=152 Identities=18% Similarity=0.186 Sum_probs=123.4
Q ss_pred ccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCC
Q 023642 101 AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 180 (279)
..|+.+.+|++........+.||++.+.|+.+++||..|.+|+-|++||-||++.+..+.. ....+.|+++..+|.
T Consensus 528 csdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq----hdF~SQIfSLg~cP~ 603 (705)
T KOG0639|consen 528 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ----HDFSSQIFSLGYCPT 603 (705)
T ss_pred ccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh----hhhhhhheecccCCC
Confidence 4688999999999988899999999999999999999999999999999999999866543 455678999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCC------------------------CCccccEEEEEEe
Q 023642 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD------------------------GGYSFGIFSLKFS 236 (279)
Q Consensus 181 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~v~~~~~s 236 (279)
+.+++.|..++.+.+......+...+.....+.-.+.|...+. ..-.+.|.++..|
T Consensus 604 ~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS 683 (705)
T KOG0639|consen 604 GDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDIS 683 (705)
T ss_pred ccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeec
Confidence 9999999999999998887665543333333333333333322 2235678999999
Q ss_pred cCCCEEEEecCCCeEEEEEC
Q 023642 237 TDGRELVAGSSDDCIYVYDL 256 (279)
Q Consensus 237 p~g~~l~t~s~d~~i~vwd~ 256 (279)
.|.++++||+.|....||.+
T Consensus 684 ~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 684 FDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCceEEEecCCCcceEEEEE
Confidence 99999999999988888765
No 147
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.53 E-value=1.1e-13 Score=110.61 Aligned_cols=121 Identities=19% Similarity=0.295 Sum_probs=103.8
Q ss_pred CCCCCeEEEEECCC----CCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCC-CEEEEEeCCCeEEEE
Q 023642 122 QTTSRAYVSQFSAD----GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIV 196 (279)
Q Consensus 122 ~h~~~V~~~~~spd----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~ 196 (279)
.|....+.++|+-| ..++|.|+.-|.|+|.|+.++++... ..+|.+.|..+.++|+. ++++++|.|..|++|
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~---~~ghG~sINeik~~p~~~qlvls~SkD~svRlw 163 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKN---YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLW 163 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccc---eeccCccchhhhcCCCCCcEEEEecCCceEEEE
Confidence 47888899999864 34788899999999999999877654 57999999999999965 678999999999999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
++++..+..+..-. .||...|.++.|+++|.++++++.|.+|.+|++..
T Consensus 164 nI~~~~Cv~VfGG~-------------egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 164 NIQTDVCVAVFGGV-------------EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred eccCCeEEEEeccc-------------ccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence 99999886644321 24888999999999999999999999999999984
No 148
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=1.6e-12 Score=112.61 Aligned_cols=148 Identities=12% Similarity=0.112 Sum_probs=117.2
Q ss_pred eccccceEeeeeecCCCC-ceeeCC-CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEE
Q 023642 100 SAADCCHMLSRYLPVNGP-WPVDQT-TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL 177 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~-~~l~~h-~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (279)
+-.++.+-+|++.+.--. ..+.++ ...|.+++|++ +..|++.+.+|.|.-||+.+++.... .....+.|++++.
T Consensus 43 sRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~---~d~~gg~IWsiai 118 (691)
T KOG2048|consen 43 SRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYN---IDSNGGAIWSIAI 118 (691)
T ss_pred eccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEE---ecCCCcceeEEEe
Confidence 556778888887764322 235565 56799999994 55677888889999999999876554 3455678999999
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 178 SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 178 sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
+|.+..++.|+.||.+..++...+.......... ..+.|.+++|+|++..+++|+.|+.|++||+.
T Consensus 119 ~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r--------------q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 119 NPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR--------------QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK 184 (691)
T ss_pred CCccceEEeecCCceEEEEecCCceEEEEeeccc--------------ccceEEEEEecCCccEEEecccCceEEEEEcC
Confidence 9999999999999988888888777654333222 33589999999999999999999999999999
Q ss_pred CCeEEEEE
Q 023642 258 ANKLSLRI 265 (279)
Q Consensus 258 ~~~~~~~~ 265 (279)
++..+...
T Consensus 185 ~~~t~~~~ 192 (691)
T KOG2048|consen 185 SGQTLHII 192 (691)
T ss_pred CCceEEEe
Confidence 99887743
No 149
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.53 E-value=2.7e-14 Score=126.24 Aligned_cols=232 Identities=11% Similarity=0.090 Sum_probs=164.8
Q ss_pred eccccccchhhhhhhhcccccccccccccccccCccccCCCCCchhHHHHHHHhhccccCCccccccccCCCCCcccchh
Q 023642 4 TASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTV 83 (279)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (279)
.+|++...++|-+..++.+.........+.. ..-.+.+.+..+++|..|-..++.+.+.....+.+
T Consensus 141 ~~~~~sl~s~~~~~~~h~~a~~i~~at~~~a-----------kPgtmvqkmk~ikrLlgH~naVyca~fDrtg~~Ii--- 206 (1113)
T KOG0644|consen 141 QVRGVSLRSIGGGFEIHHRAPSIGCATFSIA-----------KPGTMVQKMKNIKRLLGHRNAVYCAIFDRTGRYII--- 206 (1113)
T ss_pred ccccceeccCCcchhhhhcCcccccceeeec-----------CcHHHHHHHHHHHHHHhhhhheeeeeeccccceEe---
Confidence 3678888888887777666433333333332 23348899999999999998887777766555543
Q ss_pred hhhccccCccCCCCeeeccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeee
Q 023642 84 KMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI 163 (279)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 163 (279)
-.+.|+.+.+|...+........||.+.++.++.+.+..++++++.|..|++|-+.++.++..
T Consensus 207 ---------------tgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsv-- 269 (1113)
T KOG0644|consen 207 ---------------TGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSV-- 269 (1113)
T ss_pred ---------------ecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHH--
Confidence 145677778888655555566899999999999999999999999999999999999976654
Q ss_pred eccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecccc------------cccee---------------
Q 023642 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTE------------IHDGL--------------- 216 (279)
Q Consensus 164 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------------~~~~~--------------- 216 (279)
+.+|++.|++++|+|-. +.+.||++++||.+-........... ...+.
T Consensus 270 -LrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e 344 (1113)
T KOG0644|consen 270 -LRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHE 344 (1113)
T ss_pred -HhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccch
Confidence 68999999999999964 77899999999988111111100000 00000
Q ss_pred -----------EEeeC-----------------------------CCCCccccEEEEEEecCCCEE-EEecCCCeEEEEE
Q 023642 217 -----------DFSAA-----------------------------DDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYD 255 (279)
Q Consensus 217 -----------~~~~~-----------------------------~~~~~~~~v~~~~~sp~g~~l-~t~s~d~~i~vwd 255 (279)
.|... ...+|...++.+.++|-...+ .+++.||...|||
T Consensus 345 ~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 345 FEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred hhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeee
Confidence 00000 004577888999999976554 4789999999999
Q ss_pred CCCCeEEEEEe-CCCcc
Q 023642 256 LEANKLSLRIL-AHTVN 271 (279)
Q Consensus 256 ~~~~~~~~~~~-~h~~~ 271 (279)
+..|.+++.+. +|..-
T Consensus 425 i~eg~pik~y~~gh~kl 441 (1113)
T KOG0644|consen 425 IWEGIPIKHYFIGHGKL 441 (1113)
T ss_pred cccCCcceeeeccccee
Confidence 99998887665 55433
No 150
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.52 E-value=3.5e-13 Score=107.62 Aligned_cols=178 Identities=14% Similarity=0.082 Sum_probs=128.5
Q ss_pred hhhccccCccCCCCee--eccccceEeeee-ecCCCCc--ee-----eCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEE
Q 023642 84 KMLAGREGNYSGRGRF--SAADCCHMLSRY-LPVNGPW--PV-----DQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYD 152 (279)
Q Consensus 84 ~~~~~~~~~~~~~~~~--~~~d~~~~~~~~-~~~~~~~--~l-----~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd 152 (279)
....++...|+++|.. .+-.+++.+.+. .|..... .. .+..+.+.+++|+| +...++.|+.-.++-||.
T Consensus 157 e~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~ 236 (406)
T KOG2919|consen 157 EYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYN 236 (406)
T ss_pred hhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEe
Confidence 3455667788998874 555667777666 3332221 12 23478899999999 666899999999999998
Q ss_pred cCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC-CCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEE
Q 023642 153 VERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF 231 (279)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 231 (279)
-..+.++.. +.+|.+.|+.+.|+++|+.|++|+. |..|..||++.-..... .. . .+.. .+..-.
T Consensus 237 ~~~~~pl~l---lggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~-~L-~--------rhv~--~TNQRI 301 (406)
T KOG2919|consen 237 DDGRRPLQL---LGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY-AL-E--------RHVG--DTNQRI 301 (406)
T ss_pred cCCCCceee---ecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh-hh-h--------hhcc--CccceE
Confidence 877766554 5699999999999999999999884 67899999987543211 11 0 0000 011112
Q ss_pred EEEEecCCCEEEEecCCCeEEEEECCC-CeEEEEEeCCCcceeEEE
Q 023642 232 SLKFSTDGRELVAGSSDDCIYVYDLEA-NKLSLRILAHTVNIALWI 276 (279)
Q Consensus 232 ~~~~sp~g~~l~t~s~d~~i~vwd~~~-~~~~~~~~~h~~~v~~v~ 276 (279)
-....|++++|++|+.||.|++||+++ |..+..+..|...||.|.
T Consensus 302 ~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvs 347 (406)
T KOG2919|consen 302 LFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVS 347 (406)
T ss_pred EEecCCCCceeeccCCCccEEEEecCCCCCccccccccccccccee
Confidence 234468999999999999999999998 788888888888888764
No 151
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.52 E-value=3.3e-12 Score=106.32 Aligned_cols=134 Identities=17% Similarity=0.147 Sum_probs=97.4
Q ss_pred CCeEEEEECCCCCEEEEE-eCCCcEEEEEcCCCeEEeeeeecc--CC--CcceEEEEECCCCCEEEE-EeCCCeEEEEEC
Q 023642 125 SRAYVSQFSADGSLFVAG-FQASQIRIYDVERGWKIQKDILAK--SL--RWTVTDTSLSPDQRHLVY-ASMSPIVHIVDV 198 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~--~~--~~~v~~~~~sp~~~~l~~-~~~d~~i~i~d~ 198 (279)
.....++|+|++++|+.+ ..++.|++||+.+++.+....... .+ ......++|+|++++++. .+.++.+.+||+
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~ 236 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDA 236 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEEC
Confidence 456789999999988554 568999999999886654422110 01 112356889999998654 455678999999
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEe-cCCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~-s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
.+++...... +...+.+++|+|+|++|+++ +.++.|++||+.+++++.+++.... .+.++
T Consensus 237 ~~~~~~~~~~-----------------~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~~~~ 297 (300)
T TIGR03866 237 KTYEVLDYLL-----------------VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRL-PWGVV 297 (300)
T ss_pred CCCcEEEEEE-----------------eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccc-cceeE
Confidence 8877643211 11268899999999999876 4689999999999999999986543 36665
No 152
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.52 E-value=3.5e-13 Score=111.47 Aligned_cols=141 Identities=12% Similarity=0.104 Sum_probs=113.2
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEEC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 178 (279)
++.|.++++|++.......++..|.++|.+++|+| ....|++|+.|++|.+.|.+........ ....+.|..++|.
T Consensus 262 gsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~---wk~~g~VEkv~w~ 338 (463)
T KOG0270|consen 262 GSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE---WKFDGEVEKVAWD 338 (463)
T ss_pred cCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce---EEeccceEEEEec
Confidence 57899999999999999999999999999999999 5678899999999999999853222221 2344579999999
Q ss_pred CCCC-EEEEEeCCCeEEEEECCCCc-eeeeeccccccceeEEeeCCCCCccccEEEEEEecCC-CEEEEecCCCeEEEEE
Q 023642 179 PDQR-HLVYASMSPIVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYD 255 (279)
Q Consensus 179 p~~~-~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~t~s~d~~i~vwd 255 (279)
|... .++++..||+++-+|+|... ..... .. |.+.|.++++++.- ..++|++.|+.|++|+
T Consensus 339 ~~se~~f~~~tddG~v~~~D~R~~~~~vwt~-----------~A-----Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~ 402 (463)
T KOG0270|consen 339 PHSENSFFVSTDDGTVYYFDIRNPGKPVWTL-----------KA-----HDDEISGLSVNIQTPGLLSTASTDKVVKLWK 402 (463)
T ss_pred CCCceeEEEecCCceEEeeecCCCCCceeEE-----------Ee-----ccCCcceEEecCCCCcceeeccccceEEEEe
Confidence 9665 56777899999999999864 32211 11 66799999999864 4678999999999999
Q ss_pred CCCC
Q 023642 256 LEAN 259 (279)
Q Consensus 256 ~~~~ 259 (279)
+..-
T Consensus 403 ~~~~ 406 (463)
T KOG0270|consen 403 FDVD 406 (463)
T ss_pred ecCC
Confidence 8643
No 153
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.52 E-value=2.7e-12 Score=106.76 Aligned_cols=161 Identities=19% Similarity=0.176 Sum_probs=107.7
Q ss_pred ccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 101 AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
+.++.+.+|+.........+..+. .+.+++|+|+++.+ ++++.++.|++||+.+++..... ..+. .+..++|+|
T Consensus 8 ~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~---~~~~-~~~~~~~~~ 82 (300)
T TIGR03866 8 EKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL---PSGP-DPELFALHP 82 (300)
T ss_pred cCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec---cCCC-CccEEEECC
Confidence 456778888876555445555554 46789999999976 56778899999999988665432 2222 356789999
Q ss_pred CCCEEEEE-eCCCeEEEEECCCCceeeeeccccccceeEEeeCCC------------------CC-------ccccEEEE
Q 023642 180 DQRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD------------------GG-------YSFGIFSL 233 (279)
Q Consensus 180 ~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~-------~~~~v~~~ 233 (279)
+++.++++ ..++.+++||+.+.+.............+.+.+++. .+ ....+..+
T Consensus 83 ~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 162 (300)
T TIGR03866 83 NGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFA 162 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEE
Confidence 99987654 568999999998866533222111111222222211 00 01234568
Q ss_pred EEecCCCEEEEe-cCCCeEEEEECCCCeEEEEEe
Q 023642 234 KFSTDGRELVAG-SSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 234 ~~sp~g~~l~t~-s~d~~i~vwd~~~~~~~~~~~ 266 (279)
+|+|++++|+.+ ..++.|++||+.+++.+..+.
T Consensus 163 ~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~ 196 (300)
T TIGR03866 163 EFTADGKELWVSSEIGGTVSVIDVATRKVIKKIT 196 (300)
T ss_pred EECCCCCEEEEEcCCCCEEEEEEcCcceeeeeee
Confidence 899999988544 468999999999998877765
No 154
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=8e-13 Score=118.06 Aligned_cols=157 Identities=15% Similarity=0.181 Sum_probs=126.3
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.+.+.++.++.+-......++...+-++.+++|+-+|+++|.|+.|-.|++-+..+..... .+++|.++|.++.|+|
T Consensus 72 ~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~---~lrgh~apVl~l~~~p 148 (933)
T KOG1274|consen 72 GSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK---VLRGHDAPVLQLSYDP 148 (933)
T ss_pred eeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhe---eecccCCceeeeeEcC
Confidence 4566677777766666666788889999999999999999999999999999998764433 3689999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
.+.+||+.+.||.|++||+.++.+......... ...+. .+..+..++|+|+|..|+..+.|++|++|+..+.
T Consensus 149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k--~n~~~------~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w 220 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDK--DNEFI------LSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW 220 (933)
T ss_pred CCCEEEEEecCceEEEEEcccchhhhhcccCCc--ccccc------ccceeeeeeecCCCCeEEeeccCCeEEEEccCCc
Confidence 999999999999999999998876433221111 11111 1336788999999888888889999999999999
Q ss_pred eEEEEEeC
Q 023642 260 KLSLRILA 267 (279)
Q Consensus 260 ~~~~~~~~ 267 (279)
+....+..
T Consensus 221 e~~f~Lr~ 228 (933)
T KOG1274|consen 221 ELQFKLRD 228 (933)
T ss_pred eeheeecc
Confidence 98888864
No 155
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=4.8e-13 Score=111.23 Aligned_cols=134 Identities=18% Similarity=0.192 Sum_probs=101.8
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 023642 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~ 201 (279)
...+.|..+.|+.|++.|++.+.+|.|.+||+.+..++++.....+. .-+.++.++++.+||+|+..|.|.|||..+.
T Consensus 342 KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v--~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~ 419 (514)
T KOG2055|consen 342 KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV--HGTSLCISLNGSYLATGSDSGIVNIYDGNSC 419 (514)
T ss_pred eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc--ceeeeeecCCCceEEeccCcceEEEeccchh
Confidence 34788999999999999999999999999999999888775432222 3467778899999999999999999997653
Q ss_pred ce----eeeecc---ccccceeEEeeCCC------------------------------CCccccEEEEEEecCCCEEEE
Q 023642 202 TM----ESLANV---TEIHDGLDFSAADD------------------------------GGYSFGIFSLKFSTDGRELVA 244 (279)
Q Consensus 202 ~~----~~~~~~---~~~~~~~~~~~~~~------------------------------~~~~~~v~~~~~sp~g~~l~t 244 (279)
.. .++... ......+.|.++.. ...-+.|+|++|||.|.+|+.
T Consensus 420 ~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAv 499 (514)
T KOG2055|consen 420 FASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAV 499 (514)
T ss_pred hccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEe
Confidence 32 222222 12223345555544 223467999999999999999
Q ss_pred ecCCCeEEEEECC
Q 023642 245 GSSDDCIYVYDLE 257 (279)
Q Consensus 245 ~s~d~~i~vwd~~ 257 (279)
|..+|.|.+|.+.
T Consensus 500 GNe~grv~l~kL~ 512 (514)
T KOG2055|consen 500 GNEAGRVHLFKLH 512 (514)
T ss_pred ecCCCceeeEeec
Confidence 9999999999874
No 156
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.51 E-value=3.6e-13 Score=106.02 Aligned_cols=159 Identities=16% Similarity=0.158 Sum_probs=117.9
Q ss_pred cccceEeeeeecCCC-Ccee-----eCCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceE
Q 023642 102 ADCCHMLSRYLPVNG-PWPV-----DQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVT 173 (279)
Q Consensus 102 ~d~~~~~~~~~~~~~-~~~l-----~~h~~~V~~~~~sp--d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 173 (279)
.+..+.+|++..... ...+ .+|....++-+|+| |++.+++.+ |+++..||+++..+...+ ...|...|.
T Consensus 142 ~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI--~dAHgq~vr 218 (370)
T KOG1007|consen 142 DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSI--EDAHGQRVR 218 (370)
T ss_pred ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcch--hhhhcceee
Confidence 466777788766544 2111 34678889999999 888887765 589999999987665543 356777899
Q ss_pred EEEECCCCCE-EEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC-CCEEEEecCCCeE
Q 023642 174 DTSLSPDQRH-LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCI 251 (279)
Q Consensus 174 ~~~~sp~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~t~s~d~~i 251 (279)
++.|.|+.++ |++|+.||.|+|||.+..+..... . .+|+.+|+++.|+|. .+++++|+.|..|
T Consensus 219 dlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~e-l--------------~~HsHWvW~VRfn~~hdqLiLs~~SDs~V 283 (370)
T KOG1007|consen 219 DLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQE-L--------------PGHSHWVWAVRFNPEHDQLILSGGSDSAV 283 (370)
T ss_pred eccCCCCceEEEEEcCCCccEEEEeccCCCccccc-c--------------CCCceEEEEEEecCccceEEEecCCCcee
Confidence 9999998765 789999999999999986542111 1 137779999999997 5567799999999
Q ss_pred EEEECCC-----------------------------CeEEEEEeCCCcceeEEEee
Q 023642 252 YVYDLEA-----------------------------NKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 252 ~vwd~~~-----------------------------~~~~~~~~~h~~~v~~v~~~ 278 (279)
.+|...+ ...+.++..|.+.|+++.++
T Consensus 284 ~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWS 339 (370)
T KOG1007|consen 284 NLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWS 339 (370)
T ss_pred EEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeec
Confidence 9996522 11345777788888887654
No 157
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=2e-12 Score=99.62 Aligned_cols=167 Identities=11% Similarity=0.044 Sum_probs=117.1
Q ss_pred eeccccceEeeeeecCCCC------c--eeeCC-----CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeec
Q 023642 99 FSAADCCHMLSRYLPVNGP------W--PVDQT-----TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA 165 (279)
Q Consensus 99 ~~~~d~~~~~~~~~~~~~~------~--~l~~h-----~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 165 (279)
+++.|+.+..|.+...... + ...-| --.|+++-..|..+-++.++.|+.++-||+++|+.... +
T Consensus 76 ls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~---~ 152 (325)
T KOG0649|consen 76 LSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQRE---Y 152 (325)
T ss_pred eeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEE---E
Confidence 4566777777766543220 1 11122 24589999999888787788999999999999966554 6
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEe
Q 023642 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (279)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~ 245 (279)
++|.++|.++.-......+++|+.||++|+||+++++............ .+.++ ...+|.+++.+ ..+|+.|
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~--~lRp~----~g~wigala~~--edWlvCG 224 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPN--LLRPD----WGKWIGALAVN--EDWLVCG 224 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChh--hcCcc----cCceeEEEecc--CceEEec
Confidence 8999999999997777889999999999999999999865443222111 12222 22478777765 5588776
Q ss_pred cCCCeEEEEECCCCeEEEEE--eCCCcceeEEEe
Q 023642 246 SSDDCIYVYDLEANKLSLRI--LAHTVNIALWIT 277 (279)
Q Consensus 246 s~d~~i~vwd~~~~~~~~~~--~~h~~~v~~v~~ 277 (279)
+ ...+.+|++++.++...| ++|...|.-+-.
T Consensus 225 g-Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d 257 (325)
T KOG0649|consen 225 G-GPKLSLWHLRSSESTCVFPIPARVHLVDFVDD 257 (325)
T ss_pred C-CCceeEEeccCCCceEEEecccceeEeeeecc
Confidence 6 456999999987766665 466665554433
No 158
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.50 E-value=1.2e-13 Score=116.76 Aligned_cols=94 Identities=18% Similarity=0.167 Sum_probs=78.8
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~ 203 (279)
.+.|+..+|+|||++||+.++||.+||+|..+.+.+.. .+..-+...+++|+|||+||++|+.|.-|.||.+...++
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~---mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRV 366 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV---MKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRV 366 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH---HHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceE
Confidence 45889999999999999999999999999998654332 344456799999999999999999999999999998887
Q ss_pred eeeeccccccceeEEeeCCCCCccccEEEEEEe
Q 023642 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS 236 (279)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 236 (279)
...- .||++||..|+|.
T Consensus 367 VARG----------------qGHkSWVs~VaFD 383 (636)
T KOG2394|consen 367 VARG----------------QGHKSWVSVVAFD 383 (636)
T ss_pred EEec----------------cccccceeeEeec
Confidence 4321 2488899999887
No 159
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=1.4e-13 Score=125.51 Aligned_cols=178 Identities=17% Similarity=0.143 Sum_probs=130.9
Q ss_pred eccccceEeeeeecC--CCC----ceeeCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcce
Q 023642 100 SAADCCHMLSRYLPV--NGP----WPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTV 172 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~--~~~----~~l~~h~~~V~~~~~spd-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 172 (279)
+..|+.+.+|+.... ... .....|++.|..+.|+|. +++||+|+.||.|.|||+...+..-... .....+.|
T Consensus 86 G~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI 164 (1049)
T KOG0307|consen 86 GLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEI 164 (1049)
T ss_pred cccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccc
Confidence 346888999987663 111 235789999999999995 4599999999999999998753322211 22345679
Q ss_pred EEEEECCC-CCEEEEEeCCCeEEEEECCCCcee-eeecccc-c-cceeEEeeCCC-------------------------
Q 023642 173 TDTSLSPD-QRHLVYASMSPIVHIVDVGSGTME-SLANVTE-I-HDGLDFSAADD------------------------- 223 (279)
Q Consensus 173 ~~~~~sp~-~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~-~-~~~~~~~~~~~------------------------- 223 (279)
.+++|... ...|++++.+|.+.|||++..+.+ .+..... . ...+.|.++..
T Consensus 165 ~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass 244 (1049)
T KOG0307|consen 165 KCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS 244 (1049)
T ss_pred eEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC
Confidence 99999875 456889999999999999987542 1111111 0 01222222221
Q ss_pred -----CCccccEEEEEEecCC-CEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEee
Q 023642 224 -----GGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 224 -----~~~~~~v~~~~~sp~g-~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~~ 278 (279)
.+|...|.++.|.+.+ .+|++++.|+.|..|+..+++.+..+....+++..|-+|
T Consensus 245 P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~ 305 (1049)
T KOG0307|consen 245 PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWC 305 (1049)
T ss_pred chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeec
Confidence 5799999999999876 788999999999999999999999999888888887766
No 160
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=1e-13 Score=117.60 Aligned_cols=136 Identities=14% Similarity=0.206 Sum_probs=105.2
Q ss_pred CCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC--CCCEEEEEeCCCe
Q 023642 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPI 192 (279)
Q Consensus 115 ~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~ 192 (279)
.....+.||++.|++++|+.+|.+|++|+.|-++.|||....+.++.+ -.+|...|.++.|-| +.+.+++|..|..
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcce
Confidence 445568999999999999999999999999999999999876665543 468999999999999 4578999999999
Q ss_pred EEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCC-CEEEEecCCCeEEEEECCC
Q 023642 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~t~s~d~~i~vwd~~~ 258 (279)
|++||+...+....-.... .....+.. |...|-.++-.|++ ..+.++++||+|+-+|++.
T Consensus 119 i~lfdl~~~~~~~~d~~~~-~~~~~~~c-----ht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGME-ETTRCWSC-----HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred EEEEecccccccccccCcc-chhhhhhh-----hhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 9999998532211000000 00001222 55688899999998 5677999999999999986
No 161
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1e-11 Score=98.64 Aligned_cols=177 Identities=13% Similarity=0.134 Sum_probs=123.1
Q ss_pred eccccceEeeeeecCCCCce----eeCCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcC-----C-CeEEeeeeeccC
Q 023642 100 SAADCCHMLSRYLPVNGPWP----VDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVE-----R-GWKIQKDILAKS 167 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~----l~~h~~~V~~~~~sp--d~~~l~s~~~d~~i~iwd~~-----~-~~~~~~~~~~~~ 167 (279)
.+.|.++.+|++......+. -+.|.+.|..+.|.+ -|+.+|+++.|+++.||.=. . +....+...+..
T Consensus 31 CSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~D 110 (361)
T KOG2445|consen 31 CSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVD 110 (361)
T ss_pred ccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeec
Confidence 46899999999866666655 468999999999976 68999999999999999641 1 112223334566
Q ss_pred CCcceEEEEECC--CCCEEEEEeCCCeEEEEECCCCceeeeeccccc--------------cceeEEee-----------
Q 023642 168 LRWTVTDTSLSP--DQRHLVYASMSPIVHIVDVGSGTMESLANVTEI--------------HDGLDFSA----------- 220 (279)
Q Consensus 168 ~~~~v~~~~~sp--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--------------~~~~~~~~----------- 220 (279)
.+..|+++.|.| -|-.+|+++.||++|||+....-.......... ...+.+++
T Consensus 111 srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvg 190 (361)
T KOG2445|consen 111 SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVG 190 (361)
T ss_pred CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEE
Confidence 777899999999 467899999999999998754221100000000 00001110
Q ss_pred ------------------CCC--------CCccccEEEEEEecC-CC---EEEEecCCCeEEEEECCC------------
Q 023642 221 ------------------ADD--------GGYSFGIFSLKFSTD-GR---ELVAGSSDDCIYVYDLEA------------ 258 (279)
Q Consensus 221 ------------------~~~--------~~~~~~v~~~~~sp~-g~---~l~t~s~d~~i~vwd~~~------------ 258 (279)
+++ .+|..+|++++|.|+ |+ .||+++.|| |+||+++.
T Consensus 191 s~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~ 269 (361)
T KOG2445|consen 191 SDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLA 269 (361)
T ss_pred cccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccC
Confidence 000 457899999999997 43 688999999 99999973
Q ss_pred --------CeEEEEEeCCCcceeEEEe
Q 023642 259 --------NKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 259 --------~~~~~~~~~h~~~v~~v~~ 277 (279)
=+.+..+.+|...|+.+-+
T Consensus 270 ~~~~~~l~v~~vs~~~~H~~~VWrv~w 296 (361)
T KOG2445|consen 270 PDLMTDLPVEKVSELDDHNGEVWRVRW 296 (361)
T ss_pred CCCccccceEEeeeccCCCCceEEEEE
Confidence 1245667789888887653
No 162
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.49 E-value=1.4e-12 Score=102.72 Aligned_cols=160 Identities=12% Similarity=0.102 Sum_probs=116.7
Q ss_pred eeccccceEeeeeecCCCCce---------eeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCC
Q 023642 99 FSAADCCHMLSRYLPVNGPWP---------VDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL 168 (279)
Q Consensus 99 ~~~~d~~~~~~~~~~~~~~~~---------l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 168 (279)
+...++.+++|+.-+.+.... -..+..++++..|+. |.+++.+++-|-+..|||+.++........+-.|
T Consensus 116 LATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAH 195 (364)
T KOG0290|consen 116 LATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAH 195 (364)
T ss_pred hhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEec
Confidence 356678889998875333211 245678999999997 8889999999999999999987431112235689
Q ss_pred CcceEEEEECCCCC-EEEEEeCCCeEEEEECCCCceeeeeccccc-cc---ee-----------EEeeCCC---------
Q 023642 169 RWTVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEI-HD---GL-----------DFSAADD--------- 223 (279)
Q Consensus 169 ~~~v~~~~~sp~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~---~~-----------~~~~~~~--------- 223 (279)
...|.+++|...+. .+|+.+.||.+|+||++..+.-.+...... .. .+ +|..+..
T Consensus 196 DKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~ 275 (364)
T KOG0290|consen 196 DKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV 275 (364)
T ss_pred CcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC
Confidence 99999999998664 688999999999999987654322221111 00 01 1111111
Q ss_pred --------CCccccEEEEEEecC-CCEEEEecCCCeEEEEECCC
Q 023642 224 --------GGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 224 --------~~~~~~v~~~~~sp~-g~~l~t~s~d~~i~vwd~~~ 258 (279)
.+|.+.|+.++|.|. ...+.|++.|..+-+||+.+
T Consensus 276 P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 276 PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred CCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 679999999999996 66899999999999999964
No 163
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.48 E-value=3.6e-13 Score=105.98 Aligned_cols=138 Identities=12% Similarity=0.183 Sum_probs=107.1
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeee---eccCCCcceEEEEECC--CCCEEEEEeCCCeEEEE
Q 023642 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI---LAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIV 196 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~i~i~ 196 (279)
.+-+.|.|+.|.|++..+++-. |..|.+|++..+..+.... ...+++...++-+|+| ||+.+++. .|+++..|
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~ 198 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFW 198 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEE
Confidence 4557999999999999998876 7899999998775522111 1123455788889999 77888775 46899999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCC-EEEEecCCCeEEEEECCC-CeEEEEEeCCCcceeE
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEA-NKLSLRILAHTVNIAL 274 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~t~s~d~~i~vwd~~~-~~~~~~~~~h~~~v~~ 274 (279)
|+++-.+..... +.|.+.|..+.|+|+.+ +|+|++.|+.|++||.+. ..+++.+.+|..+|++
T Consensus 199 D~RT~~~~~sI~---------------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 199 DLRTMKKNNSIE---------------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA 263 (370)
T ss_pred Eccchhhhcchh---------------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEE
Confidence 999766532221 12666899999999966 578999999999999985 6699999999999998
Q ss_pred EE
Q 023642 275 WI 276 (279)
Q Consensus 275 v~ 276 (279)
|=
T Consensus 264 VR 265 (370)
T KOG1007|consen 264 VR 265 (370)
T ss_pred EE
Confidence 73
No 164
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.47 E-value=3.5e-12 Score=103.54 Aligned_cols=140 Identities=15% Similarity=0.177 Sum_probs=107.5
Q ss_pred ccceEeeeeecCCCCceee---CCCCCeEEEEECCCCCEEEEE--eCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEE
Q 023642 103 DCCHMLSRYLPVNGPWPVD---QTTSRAYVSQFSADGSLFVAG--FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL 177 (279)
Q Consensus 103 d~~~~~~~~~~~~~~~~l~---~h~~~V~~~~~spd~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (279)
...+.++++......+++. .+...+.++++++.+.+++.- ...|.|.+||+.+-+.+.. ...|++++-+++|
T Consensus 105 ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~---I~aH~~~lAalaf 181 (391)
T KOG2110|consen 105 EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNT---INAHKGPLAALAF 181 (391)
T ss_pred cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeE---EEecCCceeEEEE
Confidence 3346667776666555543 455667777777777888764 2358999999988766554 4699999999999
Q ss_pred CCCCCEEEEEeCCCe-EEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEEC
Q 023642 178 SPDQRHLVYASMSPI-VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (279)
Q Consensus 178 sp~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~ 256 (279)
+|+|.+||+++..|+ ||+|.+.+|+...-. .++. ....|++++|+|++++|++.|..++|++|.+
T Consensus 182 s~~G~llATASeKGTVIRVf~v~~G~kl~eF--RRG~------------~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 182 SPDGTLLATASEKGTVIRVFSVPEGQKLYEF--RRGT------------YPVSIYSLSFSPDSQFLAASSNTETVHIFKL 247 (391)
T ss_pred CCCCCEEEEeccCceEEEEEEcCCccEeeee--eCCc------------eeeEEEEEEECCCCCeEEEecCCCeEEEEEe
Confidence 999999999999886 899999999874332 2221 1237999999999999999999999999999
Q ss_pred CCC
Q 023642 257 EAN 259 (279)
Q Consensus 257 ~~~ 259 (279)
...
T Consensus 248 ~~~ 250 (391)
T KOG2110|consen 248 EKV 250 (391)
T ss_pred ccc
Confidence 753
No 165
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.47 E-value=3.8e-13 Score=115.82 Aligned_cols=140 Identities=19% Similarity=0.199 Sum_probs=101.4
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCC-EEEEEeCCCeEEEEEC
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDV 198 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~i~i~d~ 198 (279)
...|...|..+.|.|...+|++++.|.++++||+.++...... .+.+|.+.|.+++|+|+.. .+++|+.||.|.|||+
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~ 174 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC 174 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce-eecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence 4679999999999997778999999999999999998776553 4679999999999999654 6889999999999999
Q ss_pred CCCceeeeec----ccccccee-------EEeeCCCCCccccEEE---EEEecCCCEEEEecC-CCeEEEEECCCCe
Q 023642 199 GSGTMESLAN----VTEIHDGL-------DFSAADDGGYSFGIFS---LKFSTDGRELVAGSS-DDCIYVYDLEANK 260 (279)
Q Consensus 199 ~~~~~~~~~~----~~~~~~~~-------~~~~~~~~~~~~~v~~---~~~sp~g~~l~t~s~-d~~i~vwd~~~~~ 260 (279)
+-........ ....+.+. .-.-.....+...|.+ +.+..|...||+++. |+.|+|||+++..
T Consensus 175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence 8644211111 11111110 0000001234445555 556678889999887 9999999998744
No 166
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=3.5e-13 Score=114.56 Aligned_cols=137 Identities=7% Similarity=0.130 Sum_probs=107.5
Q ss_pred eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-----CeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeE
Q 023642 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-----GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i 193 (279)
++..|.+.|..++|.|....|++++.|+.|++|++.. ...+..+..+++|.++|.++++.+.+.++++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 5788999999999999999999999999999999932 23445556789999999999999999999999999999
Q ss_pred EEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeE
Q 023642 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (279)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~ 261 (279)
+.|++.. ..-..-......-.-.+. ||...|+.+++|+....|++++.||+++.|+.....+
T Consensus 369 ~~w~~p~-n~dp~ds~dp~vl~~~l~-----Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 369 RCWNLPP-NQDPDDSYDPSVLSGTLL-----GHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred eeeccCC-CCCcccccCcchhcccee-----ccccceeeeeecccccceeeecCCceEEeeccCCcCc
Confidence 9998762 211000000000011233 4666999999999999999999999999999876555
No 167
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.45 E-value=2.2e-12 Score=112.21 Aligned_cols=141 Identities=15% Similarity=0.158 Sum_probs=105.4
Q ss_pred ceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEe-eeeeccCCCcceEEEEECCCCCE
Q 023642 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ-KDILAKSLRWTVTDTSLSPDQRH 183 (279)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~ 183 (279)
.+++|+.-.-.....+.+|.-.|+.++||||+++|++.+.|.++.+|......... .+.....|..-|+++.|+|++.+
T Consensus 553 vI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~ 632 (764)
T KOG1063|consen 553 VIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKY 632 (764)
T ss_pred EEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccce
Confidence 34455544444455699999999999999999999999999999999986543221 11224688888999999999999
Q ss_pred EEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC-----CCEEEEecCCCeEEEEECC
Q 023642 184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-----GRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 184 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----g~~l~t~s~d~~i~vwd~~ 257 (279)
++++|.|++|++|......-..+...... .+...|+.++|.|- +..++.|-+.|.|.+|...
T Consensus 633 FaTaSRDK~VkVW~~~~~~d~~i~~~a~~------------~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 633 FATASRDKKVKVWEEPDLRDKYISRFACL------------KFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred eEEecCCceEEEEeccCchhhhhhhhchh------------ccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 99999999999999887732222221110 14458899998772 2256778889999999965
No 168
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=1.8e-12 Score=106.75 Aligned_cols=151 Identities=19% Similarity=0.157 Sum_probs=118.5
Q ss_pred ccCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeee-----
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI----- 163 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~----- 163 (279)
.++.+|.. .+.|+++++|++-..........|...|.++.|+|||++|++-+.| ..+||+..++.++....
T Consensus 151 af~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~ 229 (398)
T KOG0771|consen 151 AFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKD 229 (398)
T ss_pred EEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccc
Confidence 45555443 5678999999987777777788999999999999999999999999 99999998872211100
Q ss_pred ---------------------ecc-------------------------CCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 023642 164 ---------------------LAK-------------------------SLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (279)
Q Consensus 164 ---------------------~~~-------------------------~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d 197 (279)
... .....|++++.++||++++.|+.||.|.|++
T Consensus 230 ~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~ 309 (398)
T KOG0771|consen 230 EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYD 309 (398)
T ss_pred hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEE
Confidence 000 0022589999999999999999999999999
Q ss_pred CCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
..+-+.....+. .|..-|+.+.|+||.+++++-+.|..+.|..+.-
T Consensus 310 ~~~lq~~~~vk~---------------aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 310 AKSLQRLQYVKE---------------AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eceeeeeEeehh---------------hheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 988776443321 2777999999999999999988888888887754
No 169
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.8e-12 Score=111.01 Aligned_cols=164 Identities=14% Similarity=0.133 Sum_probs=110.7
Q ss_pred CCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeecc---------------------------
Q 023642 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK--------------------------- 166 (279)
Q Consensus 114 ~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------------------------- 166 (279)
......+.+|++.|.++...|.|.+|++|+.||+|+||.+.+|.|+.......
T Consensus 390 t~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 390 TRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred ceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEe
Confidence 33445679999999999999999999999999999999999998887642111
Q ss_pred -------------------------------------------------CCCcceEEEEECCCCCEEEEEeCC---CeEE
Q 023642 167 -------------------------------------------------SLRWTVTDTSLSPDQRHLVYASMS---PIVH 194 (279)
Q Consensus 167 -------------------------------------------------~~~~~v~~~~~sp~~~~l~~~~~d---~~i~ 194 (279)
.|...|.++.||..|.||++...+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 222345556666666666554432 3455
Q ss_pred EEECCCCceeeee-ccccccceeEEeeCCC------------------------CCccccEEEEEEecCCCEEEEecCCC
Q 023642 195 IVDVGSGTMESLA-NVTEIHDGLDFSAADD------------------------GGYSFGIFSLKFSTDGRELVAGSSDD 249 (279)
Q Consensus 195 i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~------------------------~~~~~~v~~~~~sp~g~~l~t~s~d~ 249 (279)
|+++.....+... +.........|.+... .....+|..++.+|.|.-|+.|+.|+
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence 6655543332211 1111111222332221 22356788899999999999999999
Q ss_pred eEEEEECCC-CeEEEEEeCCCcceeEEEe
Q 023642 250 CIYVYDLEA-NKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 250 ~i~vwd~~~-~~~~~~~~~h~~~v~~v~~ 277 (279)
.+..+|+.- .++.+++..|...+++|++
T Consensus 630 k~~WfDldlsskPyk~lr~H~~avr~Va~ 658 (733)
T KOG0650|consen 630 KMCWFDLDLSSKPYKTLRLHEKAVRSVAF 658 (733)
T ss_pred eeEEEEcccCcchhHHhhhhhhhhhhhhh
Confidence 999999874 4688888888888887753
No 170
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.44 E-value=1.9e-11 Score=99.36 Aligned_cols=166 Identities=18% Similarity=0.170 Sum_probs=114.0
Q ss_pred ccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCc-EEEEEcCCCeEEeeeeeccCCCcceEEEEECCCC
Q 023642 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQ-IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 181 (279)
Q Consensus 103 d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 181 (279)
-+.+++|+.......-.+..|.+.+.+++|+|+|.+||+++..|+ |||+.+..|+.+..+....- -..|.+++|+||+
T Consensus 152 ~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~~~IySL~Fs~ds 230 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-PVSIYSLSFSPDS 230 (391)
T ss_pred CceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-eeEEEEEEECCCC
Confidence 456888999888888889999999999999999999999999986 68999999987776432222 3468999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeeec--cccccce-e-----EEeeCC-------C-------CCccccEEEEEEe--c
Q 023642 182 RHLVYASMSPIVHIVDVGSGTMESLAN--VTEIHDG-L-----DFSAAD-------D-------GGYSFGIFSLKFS--T 237 (279)
Q Consensus 182 ~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~-~-----~~~~~~-------~-------~~~~~~v~~~~~s--p 237 (279)
++|++.+..++|++|.+.......... ......+ . .+.+.. . -...+.-..+.+. +
T Consensus 231 ~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~ 310 (391)
T KOG2110|consen 231 QFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQ 310 (391)
T ss_pred CeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccC
Confidence 999999999999999887543211110 0000000 0 000000 0 0001111233444 4
Q ss_pred CCCEEEEecCCCeEEEEECCC--CeEEEEEeCCC
Q 023642 238 DGRELVAGSSDDCIYVYDLEA--NKLSLRILAHT 269 (279)
Q Consensus 238 ~g~~l~t~s~d~~i~vwd~~~--~~~~~~~~~h~ 269 (279)
..+++..++.||.++.|.+.. |.....+..|.
T Consensus 311 ~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h~ 344 (391)
T KOG2110|consen 311 KIPRVLVASYDGHLYSYRLPPKEGGECALIKRHF 344 (391)
T ss_pred CCCEEEEEEcCCeEEEEEcCCCCCceeEEEEeec
Confidence 678888999999999998753 55555666554
No 171
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.43 E-value=8.1e-13 Score=114.63 Aligned_cols=165 Identities=15% Similarity=0.137 Sum_probs=128.3
Q ss_pred ccCccCCCCe--eeccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeecc
Q 023642 89 REGNYSGRGR--FSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK 166 (279)
Q Consensus 89 ~~~~~~~~~~--~~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 166 (279)
+...|.|+|. +.+++..+.+++...+....++++|.+.|++++|+.||.++++|+.|+.|.+|+..-.-.++ .
T Consensus 16 ~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk-----Y 90 (1081)
T KOG1538|consen 16 NDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK-----Y 90 (1081)
T ss_pred heeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee-----e
Confidence 3445666654 35778888888888888889999999999999999999999999999999999865322222 4
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec
Q 023642 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 167 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
.|...|.++.|.|-...|++++.. ..-+|........... -...+.+++|..||++|+-|-
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~k------------------ss~R~~~CsWtnDGqylalG~ 151 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKHK------------------SSSRIICCSWTNDGQYLALGM 151 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhhh------------------hheeEEEeeecCCCcEEEEec
Confidence 788899999999999999999865 4667766544332111 123789999999999999999
Q ss_pred CCCeEEEEECCCCeEEEEEe---CCCcceeEEEee
Q 023642 247 SDDCIYVYDLEANKLSLRIL---AHTVNIALWITC 278 (279)
Q Consensus 247 ~d~~i~vwd~~~~~~~~~~~---~h~~~v~~v~~~ 278 (279)
.+|+|.+-+- ++++-..++ |...+|+++..|
T Consensus 152 ~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~ 185 (1081)
T KOG1538|consen 152 FNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWN 185 (1081)
T ss_pred cCceEEeecC-CCCcceEEeCCCCCCCCceEEEec
Confidence 9999999875 455544444 577788888765
No 172
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.43 E-value=2.2e-12 Score=105.55 Aligned_cols=140 Identities=17% Similarity=0.167 Sum_probs=108.6
Q ss_pred eccccceEeeeeecC-------CCCceeeCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcc
Q 023642 100 SAADCCHMLSRYLPV-------NGPWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWT 171 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~-------~~~~~l~~h~~~V~~~~~spd-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 171 (279)
.+.|+++.+|.+-.. .....|.+|...|--++|+|. .+.|++++.|++|.+|++.+|+.+.. ..|..-
T Consensus 100 gSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~----l~hpd~ 175 (472)
T KOG0303|consen 100 GSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALIT----LDHPDM 175 (472)
T ss_pred CCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeee----cCCCCe
Confidence 467889999976432 223458999999999999994 56789999999999999999976554 249999
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec---CC
Q 023642 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS---SD 248 (279)
Q Consensus 172 v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s---~d 248 (279)
|.++.|+-||.+|++.+.|+.|+|||.++++...... .+.+ ..-..+.|-.+|.++.||- .+
T Consensus 176 i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~---~heG------------~k~~Raifl~~g~i~tTGfsr~se 240 (472)
T KOG0303|consen 176 VYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV---AHEG------------AKPARAIFLASGKIFTTGFSRMSE 240 (472)
T ss_pred EEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc---cccC------------CCcceeEEeccCceeeeccccccc
Confidence 9999999999999999999999999999998754321 1111 1345667878888655553 46
Q ss_pred CeEEEEECCC
Q 023642 249 DCIYVYDLEA 258 (279)
Q Consensus 249 ~~i~vwd~~~ 258 (279)
..+-+||-..
T Consensus 241 Rq~aLwdp~n 250 (472)
T KOG0303|consen 241 RQIALWDPNN 250 (472)
T ss_pred cceeccCccc
Confidence 7899998654
No 173
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.41 E-value=3.2e-12 Score=110.27 Aligned_cols=164 Identities=15% Similarity=0.127 Sum_probs=110.3
Q ss_pred eccccceEeeeeecCCCCc--eeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEE-----------------
Q 023642 100 SAADCCHMLSRYLPVNGPW--PVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKI----------------- 159 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~--~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~----------------- 159 (279)
.+.|.+...|++....... .+.||...|.+++|.| |...|++|+.||.|.|||++....-
T Consensus 118 asGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p 197 (720)
T KOG0321|consen 118 ASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP 197 (720)
T ss_pred ccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC
Confidence 5678889999988765443 4899999999999999 5567899999999999998643100
Q ss_pred ------e-eeeeccCCCcceEE---EEECCCCCEEEEEeC-CCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccc
Q 023642 160 ------Q-KDILAKSLRWTVTD---TSLSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSF 228 (279)
Q Consensus 160 ------~-~~~~~~~~~~~v~~---~~~sp~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (279)
. .......+...|.+ +.+..|...||+++. |+.|++||++......-...... .. +.-+.. -..
T Consensus 198 tpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~-~~--~~t~sk--rs~ 272 (720)
T KOG0321|consen 198 TPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGS-DK--YPTHSK--RSV 272 (720)
T ss_pred CCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcc-cC--ccCccc--cee
Confidence 0 00001123334555 556678899999887 99999999998665322211111 11 111100 123
Q ss_pred cEEEEEEecCCCEEEEecCCCeEEEEECCCC--eEEEEEeCC
Q 023642 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEAN--KLSLRILAH 268 (279)
Q Consensus 229 ~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~--~~~~~~~~h 268 (279)
.+.++.....|.+|+..+.|+.|++||+.+- .+++.+.|+
T Consensus 273 G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~ 314 (720)
T KOG0321|consen 273 GQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGK 314 (720)
T ss_pred eeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCc
Confidence 5778888888999888888999999999862 244444444
No 174
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=1.6e-11 Score=102.36 Aligned_cols=143 Identities=16% Similarity=0.264 Sum_probs=107.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCC-EEEEEeCCCeEEEEECCCCc
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGT 202 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~i~i~d~~~~~ 202 (279)
.+.|+++.|+|....|++++.|++++||-++..... .+....-...+|..+.|+|+|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 578999999999999999999999999998754211 2112223345899999999999 78999999999999999888
Q ss_pred eeeeecccccc----ceeEEeeCCC-------CC-----------------ccccEEEEEEecCCCEEEEecCCCeEEEE
Q 023642 203 MESLANVTEIH----DGLDFSAADD-------GG-----------------YSFGIFSLKFSTDGRELVAGSSDDCIYVY 254 (279)
Q Consensus 203 ~~~~~~~~~~~----~~~~~~~~~~-------~~-----------------~~~~v~~~~~sp~g~~l~t~s~d~~i~vw 254 (279)
...+....... ..+..++.+. .| -.+.|..++|+.|++.|+.++.+|.|++|
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 75444322211 1111122221 11 23568899999999999999999999999
Q ss_pred ECCCCeEEEEEeC
Q 023642 255 DLEANKLSLRILA 267 (279)
Q Consensus 255 d~~~~~~~~~~~~ 267 (279)
|++...++.++..
T Consensus 372 nl~~~~~~~rf~D 384 (514)
T KOG2055|consen 372 NLRQNSCLHRFVD 384 (514)
T ss_pred ecCCcceEEEEee
Confidence 9999999999874
No 175
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.40 E-value=6.4e-12 Score=104.54 Aligned_cols=151 Identities=11% Similarity=0.071 Sum_probs=110.4
Q ss_pred CceeeCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeEEe-eeeeccCCCcceEEEEECCCCCEEEEEeCCCeEE
Q 023642 117 PWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQ-KDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (279)
Q Consensus 117 ~~~l~~h~~~V~~~~~spd~-~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~ 194 (279)
.+.+.-|..+|..++++|-. .+|++++.|++++|||++.-.... .+.....|...|.++.|||++-.|++.+.|..|+
T Consensus 315 ~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IR 394 (498)
T KOG4328|consen 315 YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIR 394 (498)
T ss_pred chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceE
Confidence 34577899999999999954 567999999999999998643222 1344568899999999999888899999999999
Q ss_pred EEECC----CCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCc
Q 023642 195 IVDVG----SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTV 270 (279)
Q Consensus 195 i~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~ 270 (279)
|||.. ......... .....+..-......|.|+..+++.|-.-..|-|+|-..++.+..+.+...
T Consensus 395 v~dss~~sa~~~p~~~I~-----------Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~ 463 (498)
T KOG4328|consen 395 VFDSSCISAKDEPLGTIP-----------HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPES 463 (498)
T ss_pred EeecccccccCCccceee-----------ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccc
Confidence 99985 111111111 000000011345678999999999999988999999999988888765544
Q ss_pred -ceeEEEee
Q 023642 271 -NIALWITC 278 (279)
Q Consensus 271 -~v~~v~~~ 278 (279)
.|.+++.|
T Consensus 464 ~tI~~vn~~ 472 (498)
T KOG4328|consen 464 STIPSVNEF 472 (498)
T ss_pred cccccceee
Confidence 66666543
No 176
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1.8e-11 Score=97.30 Aligned_cols=133 Identities=12% Similarity=0.077 Sum_probs=96.9
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-EEeeeeeccCCCcceEEEEECC--CCCEEEEEeCCCeEEEE
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIV 196 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~i~i~ 196 (279)
..+|.+-|.++.|.+-|+.+|+++.|++|+|||..... .......-+.|.+.|..+.|.+ -|+.+|+++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 46799999999999999999999999999999965431 2222234578999999999965 48899999999999999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC--CCEEEEecCCCeEEEEECCCC
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~t~s~d~~i~vwd~~~~ 259 (279)
.-.......... .-....++.. ..+.|++++|.|. |-.|++++.||+++||+...-
T Consensus 89 EE~~~~~~~~~~--~Wv~~ttl~D-----srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp 146 (361)
T KOG2445|consen 89 EEQEKSEEAHGR--RWVRRTTLVD-----SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP 146 (361)
T ss_pred eecccccccccc--eeEEEEEeec-----CCcceeEEEecchhcceEEEEeccCcEEEEEecCCc
Confidence 753211100000 0000001111 3458999999996 778999999999999988653
No 177
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.40 E-value=3e-11 Score=101.86 Aligned_cols=135 Identities=14% Similarity=0.179 Sum_probs=105.3
Q ss_pred CceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 023642 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (279)
Q Consensus 117 ~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~ 196 (279)
..+..+|.+....++.+|+..+++++++|+.+++|+ ..+.... +....++.+++|+|.| .+|.|...|...+.
T Consensus 361 ~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt----~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~ 433 (626)
T KOG2106|consen 361 TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWT----KIIEDPAECADFHPSG-VVAVGTATGRWFVL 433 (626)
T ss_pred eEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEE----EEecCceeEeeccCcc-eEEEeeccceEEEE
Confidence 345689999999999999999999999999999999 3323222 3345589999999999 99999999999999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC-CeEEEEEeC-CCcceeE
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-NKLSLRILA-HTVNIAL 274 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~-~~~~~~~~~-h~~~v~~ 274 (279)
|.++.....+..- ..++++++|+|+|.+||.|+.|+.|++|-+.. |....+..- |.++|..
T Consensus 434 d~e~~~lv~~~~d-----------------~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ith 496 (626)
T KOG2106|consen 434 DTETQDLVTIHTD-----------------NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITH 496 (626)
T ss_pred ecccceeEEEEec-----------------CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEE
Confidence 9999665433221 23899999999999999999999999999875 334433332 2255554
Q ss_pred E
Q 023642 275 W 275 (279)
Q Consensus 275 v 275 (279)
+
T Consensus 497 L 497 (626)
T KOG2106|consen 497 L 497 (626)
T ss_pred e
Confidence 4
No 178
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.38 E-value=1.8e-12 Score=111.96 Aligned_cols=138 Identities=18% Similarity=0.192 Sum_probs=110.4
Q ss_pred ceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCe--EEe-eeeeccCCCcceEEEEECCCCCEEEEEeCCCeE
Q 023642 118 WPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGW--KIQ-KDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~--~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i 193 (279)
-.+.+|.+.|+.+.|+| +..+|++++.|..|+||.+..+. .+. ..+.+.+..-.|.++.|+|...-|+..+..|.+
T Consensus 73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v 152 (1012)
T KOG1445|consen 73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSV 152 (1012)
T ss_pred ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceE
Confidence 34789999999999999 66788999999999999998652 221 112233344578999999987777777778999
Q ss_pred EEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC-CeEEEEEeCCCcc
Q 023642 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-NKLSLRILAHTVN 271 (279)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~-~~~~~~~~~h~~~ 271 (279)
+|||+.+++.... .. +|...|-+..|+.||..|++++.|..|+|||-+. ++++++.++|.+.
T Consensus 153 ~i~D~stqk~~~e-----------l~-----~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~ 215 (1012)
T KOG1445|consen 153 YITDISTQKTAVE-----------LS-----GHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGM 215 (1012)
T ss_pred EEEEcccCceeec-----------cc-----CCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccc
Confidence 9999999876432 12 2666899999999999999999999999999875 6789999998753
No 179
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.38 E-value=9.5e-11 Score=100.88 Aligned_cols=155 Identities=22% Similarity=0.288 Sum_probs=120.1
Q ss_pred ccceEeeeeec-CCCCceeeCCCCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCC
Q 023642 103 DCCHMLSRYLP-VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180 (279)
Q Consensus 103 d~~~~~~~~~~-~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 180 (279)
+..+.+|+... ......+..|...|..++|+|++..+++++. |+.+++|++..+..+.. ...|...|.+++|+|+
T Consensus 133 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~ 209 (466)
T COG2319 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST---LAGHTDPVSSLAFSPD 209 (466)
T ss_pred CccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEe---eccCCCceEEEEEcCC
Confidence 66788888766 5556678999999999999999999988886 99999999998655443 3458889999999999
Q ss_pred CC-EEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 181 QR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 181 ~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
+. .+++++.|+.+++||...+..... . +. +|.... -..|+|++.++++++.|+.+++|+++..
T Consensus 210 ~~~~~~~~~~d~~i~~wd~~~~~~~~~--~--------~~-----~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 273 (466)
T COG2319 210 GGLLIASGSSDGTIRLWDLSTGKLLRS--T--------LS-----GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSS 273 (466)
T ss_pred cceEEEEecCCCcEEEEECCCCcEEee--e--------cC-----CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCC
Confidence 98 555569999999998886555331 0 11 133343 2389999988999999999999999876
Q ss_pred eE-EEEEeCCCcceeEEE
Q 023642 260 KL-SLRILAHTVNIALWI 276 (279)
Q Consensus 260 ~~-~~~~~~h~~~v~~v~ 276 (279)
.. +..+.+|...|.++.
T Consensus 274 ~~~~~~~~~~~~~v~~~~ 291 (466)
T COG2319 274 SSLLRTLSGHSSSVLSVA 291 (466)
T ss_pred CcEEEEEecCCccEEEEE
Confidence 64 555567878877764
No 180
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=3.5e-11 Score=92.81 Aligned_cols=129 Identities=12% Similarity=0.184 Sum_probs=96.8
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeE------EeeeeeccCCC-----cceEEEEECCCCCEEEEEe
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK------IQKDILAKSLR-----WTVTDTSLSPDQRHLVYAS 188 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~~-----~~v~~~~~sp~~~~l~~~~ 188 (279)
..+|.++|+.++|. ..+|++|+. |.|+-|..+.... +..... .-|. -.|.++-+.|..+-++.++
T Consensus 58 eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~-P~~~~~~evPeINam~ldP~enSi~~Ag 133 (325)
T KOG0649|consen 58 EQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKI-PMQVDAVEVPEINAMWLDPSENSILFAG 133 (325)
T ss_pred ccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhccchhhhhhcC-ccccCcccCCccceeEeccCCCcEEEec
Confidence 47899999999998 356666665 9999997654211 111110 0111 1488999999888888888
Q ss_pred CCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCC
Q 023642 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 189 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h 268 (279)
.|+.++-||+++|+.... |.+ |+..|.++.--.....+++|++||++++||.+++++++.+...
T Consensus 134 GD~~~y~~dlE~G~i~r~-----------~rG-----HtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~y 197 (325)
T KOG0649|consen 134 GDGVIYQVDLEDGRIQRE-----------YRG-----HTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPY 197 (325)
T ss_pred CCeEEEEEEecCCEEEEE-----------EcC-----CcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccc
Confidence 999999999999997543 333 6668999987555556789999999999999999999998753
No 181
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=5.8e-12 Score=103.15 Aligned_cols=126 Identities=14% Similarity=0.152 Sum_probs=105.1
Q ss_pred eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC------eEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCe
Q 023642 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~ 192 (279)
-+.+|.+.|+++.||.++++|++|+.|..+++|.++.- +++. .....|...|.+++|.-..+.+++|..+++
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~--~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG--VMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce--eccCccccceEEEEEccCCeeEecCCCcce
Confidence 36899999999999999999999999999999998642 2222 123567789999999999999999999999
Q ss_pred EEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCe
Q 023642 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 260 (279)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~ 260 (279)
|.+-|+++.+.+.+.... ...+.|+.+..+|..+.|++.+.++.|.+||.+...
T Consensus 129 VI~HDiEt~qsi~V~~~~--------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANEN--------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred eEeeecccceeeeeeccc--------------CcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 999999998865443221 144689999999999999999999999999998644
No 182
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.36 E-value=1.3e-10 Score=98.13 Aligned_cols=187 Identities=18% Similarity=0.173 Sum_probs=118.0
Q ss_pred cccccccCCCCCcccchhhhhccccCccCCCCeeeccccceEeeeeecCCCCcee--eCCCCCeEEEEECCCCCEEEEEe
Q 023642 66 EHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPV--DQTTSRAYVSQFSADGSLFVAGF 143 (279)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l--~~h~~~V~~~~~spd~~~l~s~~ 143 (279)
+..+..|. ..++..+..-.-..+...|.|.| ..+.....-.|-+.+.+....+ .....++++++|+|+|.+||.|+
T Consensus 389 dk~v~lW~-~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs 466 (626)
T KOG2106|consen 389 DKHVRLWN-DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS 466 (626)
T ss_pred cceEEEcc-CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEec
Confidence 34444454 33333333223333444566666 3333333445666665554443 33378999999999999999999
Q ss_pred CCCcEEEEEcCCC-eEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCcee-eeeccccccc--eeEEe
Q 023642 144 QASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME-SLANVTEIHD--GLDFS 219 (279)
Q Consensus 144 ~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~--~~~~~ 219 (279)
.|+.|.||.++.. ....+.-. .+..+|+.+.|++|+++|.+-+.|-.|..|........ .......... .+.|.
T Consensus 467 ~d~~iyiy~Vs~~g~~y~r~~k--~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~ 544 (626)
T KOG2106|consen 467 HDNHIYIYRVSANGRKYSRVGK--CSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFE 544 (626)
T ss_pred CCCeEEEEEECCCCcEEEEeee--ecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEE
Confidence 9999999998754 34433322 33379999999999999999999999999954433221 1111111100 11111
Q ss_pred --eCCC------------------------------------------CCccccEEEEEEecCCCEEEEecCCCeEEEEE
Q 023642 220 --AADD------------------------------------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 220 --~~~~------------------------------------------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd 255 (279)
+..+ .+|++.|.+++|..+...|++.+.|.+|..|+
T Consensus 545 v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 545 VFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWR 624 (626)
T ss_pred EecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEE
Confidence 1000 56888888888888777777777888888887
Q ss_pred C
Q 023642 256 L 256 (279)
Q Consensus 256 ~ 256 (279)
+
T Consensus 625 l 625 (626)
T KOG2106|consen 625 L 625 (626)
T ss_pred e
Confidence 6
No 183
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.35 E-value=1.2e-11 Score=112.03 Aligned_cols=139 Identities=13% Similarity=0.141 Sum_probs=115.6
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
++.-..+++|.+...+.+..+.+|.+.+.++.|+-||+++++.+.|.++|+|++++.+... ...-+|...|+++.|.|
T Consensus 151 gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~ 228 (967)
T KOG0974|consen 151 GSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLP 228 (967)
T ss_pred ccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEecc
Confidence 3456678899998666677799999999999999999999999999999999999986655 24568999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
. .|++++.|.++++|+....+.... ..| -...+..++..++...++|++.|+.+++||+..
T Consensus 229 n--~i~t~gedctcrvW~~~~~~l~~y------------~~h----~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 229 N--RIITVGEDCTCRVWGVNGTQLEVY------------DEH----SGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred c--eeEEeccceEEEEEecccceehhh------------hhh----hhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 8 999999999999997665443311 111 113688999999999999999999999999865
No 184
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=4.7e-12 Score=115.66 Aligned_cols=156 Identities=16% Similarity=0.145 Sum_probs=110.1
Q ss_pred CCCCeEEEEECCCCCE----EEEEeCCCcEEEEEcCC---CeEEeeeeeccCCCcceEEEEECCCCC-EEEEEeCCCeEE
Q 023642 123 TTSRAYVSQFSADGSL----FVAGFQASQIRIYDVER---GWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVH 194 (279)
Q Consensus 123 h~~~V~~~~~spd~~~----l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~i~ 194 (279)
-..+.+.++|.+.|.. |+.|..||.|.+||... +.....+.....|.+.|..+.|+|.+. +||+|+.||.|.
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence 3577899999997765 88899999999999875 333333344678999999999999665 999999999999
Q ss_pred EEECCCCceeeeecccccccee---EEee--------CCC--------------------CCccccEEEEEEecCC-CEE
Q 023642 195 IVDVGSGTMESLANVTEIHDGL---DFSA--------ADD--------------------GGYSFGIFSLKFSTDG-REL 242 (279)
Q Consensus 195 i~d~~~~~~~~~~~~~~~~~~~---~~~~--------~~~--------------------~~~~~~v~~~~~sp~g-~~l 242 (279)
|||+.+.+.............+ .+.. ... .+....+..++|+|++ ..|
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql 222 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQL 222 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceee
Confidence 9999874432111111011111 0000 000 1112457899999985 456
Q ss_pred EEecCCC---eEEEEECCC-CeEEEEEeCCCcceeEEEee
Q 023642 243 VAGSSDD---CIYVYDLEA-NKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 243 ~t~s~d~---~i~vwd~~~-~~~~~~~~~h~~~v~~v~~~ 278 (279)
++++.|. .|.+||+|- ..+++.+++|...|.++-+|
T Consensus 223 ~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc 262 (1049)
T KOG0307|consen 223 LVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWC 262 (1049)
T ss_pred eeecCCCCCceeEeecccccCCchhhhcccccceeeeccC
Confidence 6666544 799999985 56889999999999999887
No 185
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=2e-11 Score=98.29 Aligned_cols=142 Identities=12% Similarity=0.067 Sum_probs=106.3
Q ss_pred cccceEeeeeecCCCCceeeCCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCC-cceEEEEEC
Q 023642 102 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR-WTVTDTSLS 178 (279)
Q Consensus 102 ~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp--d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~s 178 (279)
..+.+.+++..+.+....++++...++.+.|.. .+..+.+++.||+|++||++.......+. ..++. .+..+++..
T Consensus 48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~-~~~~~~~~f~~ld~n 126 (376)
T KOG1188|consen 48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS-WTQQSGTPFICLDLN 126 (376)
T ss_pred cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee-ccCCCCCcceEeecc
Confidence 455666666666666677899999999999987 56788999999999999999765544432 33443 456677776
Q ss_pred CCCCEEEEEe----CCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC-CCEEEEecCCCeEEE
Q 023642 179 PDQRHLVYAS----MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYV 253 (279)
Q Consensus 179 p~~~~l~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~t~s~d~~i~v 253 (279)
..++.+++|. .+-.+.+||++..+.. +... +. .|...|+++.|+|. -..|++||.||.|.+
T Consensus 127 ck~~ii~~GtE~~~s~A~v~lwDvR~~qq~-l~~~--------~e-----SH~DDVT~lrFHP~~pnlLlSGSvDGLvnl 192 (376)
T KOG1188|consen 127 CKKNIIACGTELTRSDASVVLWDVRSEQQL-LRQL--------NE-----SHNDDVTQLRFHPSDPNLLLSGSVDGLVNL 192 (376)
T ss_pred CcCCeEEeccccccCceEEEEEEeccccch-hhhh--------hh-----hccCcceeEEecCCCCCeEEeecccceEEe
Confidence 6778888876 4667999999987652 1111 11 26679999999996 568999999999999
Q ss_pred EECCC
Q 023642 254 YDLEA 258 (279)
Q Consensus 254 wd~~~ 258 (279)
||++.
T Consensus 193 fD~~~ 197 (376)
T KOG1188|consen 193 FDTKK 197 (376)
T ss_pred eecCC
Confidence 99964
No 186
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.35 E-value=6e-13 Score=117.88 Aligned_cols=115 Identities=17% Similarity=0.304 Sum_probs=104.3
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECC
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~ 199 (279)
+.+|...|+|+.|...|.++++|+.|..++||...++.++.. +++|.+.|+.++.+.+..++++++.|..|++|.+.
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs---~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLAS---CRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhcc---CCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 679999999999999999999999999999999999887765 78999999999999998999999999999999999
Q ss_pred CCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
.+....+.. ||++.|++++|+|-- +.+.||++++||.+
T Consensus 263 ~~~pvsvLr----------------ghtgavtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 263 DGAPVSVLR----------------GHTGAVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred CCchHHHHh----------------ccccceeeeccCccc----cCCCCCceEecccc
Confidence 988755443 388899999999974 67889999999987
No 187
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.32 E-value=3.4e-11 Score=96.20 Aligned_cols=122 Identities=14% Similarity=0.116 Sum_probs=101.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEC-CCC
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-GSG 201 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~-~~~ 201 (279)
...+|+|.+|++|+..+|.+.+...|.||.............+..|...|+.++|+|..+.|++|+.|..-++|.. ..+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 4588999999999999999999999999998877644455567899999999999999999999999999999999 444
Q ss_pred ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
.......+.+ ++..++++.|+|.+..|++|+....|.||=++.
T Consensus 89 ~WkptlvLlR--------------iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ 131 (361)
T KOG1523|consen 89 TWKPTLVLLR--------------INRAATCVKWSPKENKFAVGSGARLISVCYYEQ 131 (361)
T ss_pred eeccceeEEE--------------eccceeeEeecCcCceEEeccCccEEEEEEEec
Confidence 4433332222 344899999999999999999999999987653
No 188
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.30 E-value=8.2e-10 Score=95.05 Aligned_cols=155 Identities=26% Similarity=0.308 Sum_probs=121.1
Q ss_pred ccceEeeeeecCCCCceeeCCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCC
Q 023642 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 181 (279)
Q Consensus 103 d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 181 (279)
+..+.+|+.........+.+|...|.+++|+|++. .+++++.|+.|++||...+..... ....|.... -..|+|++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~-~~~~~~~~ 253 (466)
T COG2319 177 DGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS--TLSGHSDSV-VSSFSPDG 253 (466)
T ss_pred CCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee--ecCCCCcce-eEeECCCC
Confidence 78888888877666667888999999999999998 555559999999999886655542 245666554 33899999
Q ss_pred CEEEEEeCCCeEEEEECCCCce-eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCe
Q 023642 182 RHLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 260 (279)
Q Consensus 182 ~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~ 260 (279)
.++++++.|+.+++|++..... .... .+|...+.++.|.|++..+++++.|+.+.+||..+..
T Consensus 254 ~~~~~~~~d~~~~~~~~~~~~~~~~~~----------------~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 254 SLLASGSSDGTIRLWDLRSSSSLLRTL----------------SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred CEEEEecCCCcEEEeeecCCCcEEEEE----------------ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc
Confidence 8899999999999999987664 1111 0155689999999998888888888889999999887
Q ss_pred EEEEEe--CCCcceeEEE
Q 023642 261 LSLRIL--AHTVNIALWI 276 (279)
Q Consensus 261 ~~~~~~--~h~~~v~~v~ 276 (279)
...... .|...+..+.
T Consensus 318 ~~~~~~~~~~~~~~~~~~ 335 (466)
T COG2319 318 LLSSLTLKGHEGPVSSLS 335 (466)
T ss_pred eEEEeeecccCCceEEEE
Confidence 776665 7777555543
No 189
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.29 E-value=4.2e-11 Score=101.74 Aligned_cols=140 Identities=13% Similarity=0.163 Sum_probs=108.2
Q ss_pred CCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 023642 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (279)
Q Consensus 116 ~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (279)
....+..|.+.+.+-.|+|||.-|+++++||.|++|.-... ++. .+.....+|.+++|.|+.+-++.+..+ .+.|
T Consensus 96 VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--LRS--tl~Q~~~~v~c~~W~p~S~~vl~c~g~-h~~I 170 (737)
T KOG1524|consen 96 VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--LRS--TVVQNEESIRCARWAPNSNSIVFCQGG-HISI 170 (737)
T ss_pred hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--HHH--HHhhcCceeEEEEECCCCCceEEecCC-eEEE
Confidence 34558899999999999999999999999999999986543 221 123445589999999998877776554 4455
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEE
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALW 275 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v 275 (279)
=.+...... +.+.. |.+.|.++.|+|....+++|++|-..+|||.- |..+.+-..|..+|++|
T Consensus 171 KpL~~n~k~-----------i~WkA-----HDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSv 233 (737)
T KOG1524|consen 171 KPLAANSKI-----------IRWRA-----HDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSV 233 (737)
T ss_pred eecccccce-----------eEEec-----cCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeee
Confidence 444332211 12222 66699999999999999999999999999975 78888889999999998
Q ss_pred Ee
Q 023642 276 IT 277 (279)
Q Consensus 276 ~~ 277 (279)
.+
T Consensus 234 a~ 235 (737)
T KOG1524|consen 234 AF 235 (737)
T ss_pred ee
Confidence 75
No 190
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=1.6e-10 Score=101.47 Aligned_cols=132 Identities=19% Similarity=0.224 Sum_probs=89.9
Q ss_pred cceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCC
Q 023642 104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180 (279)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 180 (279)
..+.+|+.. ......+..|...+...+|||||+.|+.++.+ ..|++||+.++..... ....+ ....++|+||
T Consensus 184 ~~i~i~d~d-g~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g---~~~~~~wSPD 258 (429)
T PRK01742 184 YEVRVADYD-GFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRG---HNGAPAFSPD 258 (429)
T ss_pred EEEEEECCC-CCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCC---ccCceeECCC
Confidence 345555543 33356678888999999999999999887654 3799999988753221 11223 3457899999
Q ss_pred CCEEEEEe-CCCeEE--EEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec-CCCeEEEEEC
Q 023642 181 QRHLVYAS-MSPIVH--IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDL 256 (279)
Q Consensus 181 ~~~l~~~~-~d~~i~--i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s-~d~~i~vwd~ 256 (279)
|+.|+.++ .++.+. +||+.++....+.. +...+....|+|||+.|+..+ .++...||++
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~-----------------~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~ 321 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTS-----------------GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRM 321 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeecc-----------------CCCCcCCEEECCCCCEEEEEECCCCCceEEEE
Confidence 99988764 677654 45776665433221 223567899999999877554 5677777766
Q ss_pred C
Q 023642 257 E 257 (279)
Q Consensus 257 ~ 257 (279)
.
T Consensus 322 ~ 322 (429)
T PRK01742 322 S 322 (429)
T ss_pred E
Confidence 4
No 191
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.28 E-value=4.2e-11 Score=95.67 Aligned_cols=128 Identities=11% Similarity=0.102 Sum_probs=102.3
Q ss_pred CceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 023642 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (279)
Q Consensus 117 ~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~ 196 (279)
.+++..|...|+++.|+|..+.|++++.|..-++|....+........+..++..++++.|+|.++.+++|+..+.|.||
T Consensus 48 ~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVc 127 (361)
T KOG1523|consen 48 AHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVC 127 (361)
T ss_pred ceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEE
Confidence 45688999999999999999999999999999999995443433444556778889999999999999999999999998
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEEC
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~ 256 (279)
-++...--... .+..+.+.+.|.++.|+|++-.|+.|+.|+..+||..
T Consensus 128 y~E~ENdWWVs------------KhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 128 YYEQENDWWVS------------KHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSA 175 (361)
T ss_pred EEecccceehh------------hhhCCccccceeeeeccCCcceecccccCcceeEEEE
Confidence 77653321111 1111225568999999999999999999999998864
No 192
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.27 E-value=4.6e-10 Score=87.53 Aligned_cols=119 Identities=17% Similarity=0.186 Sum_probs=80.5
Q ss_pred EEEEECCCCCEEEEEeC----------CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEE--eCCCeEEE
Q 023642 128 YVSQFSADGSLFVAGFQ----------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA--SMSPIVHI 195 (279)
Q Consensus 128 ~~~~~spd~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~~d~~i~i 195 (279)
..+.|+|+|..|+.-.. -+...+|.++.......... ....++|.+++|+|+|+.++.. ..+..+.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~-l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE-LKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee-ccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 35789999987755332 13455665533221112121 2334579999999999987654 45679999
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC---CCeEEEEECCCCeEEEEEe
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~---d~~i~vwd~~~~~~~~~~~ 266 (279)
||++......+ +...+..+.|+|+|++|++++. .|.|.+||+++.+.+.++.
T Consensus 88 yd~~~~~i~~~-------------------~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~ 142 (194)
T PF08662_consen 88 YDVKGKKIFSF-------------------GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE 142 (194)
T ss_pred EcCcccEeEee-------------------cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc
Confidence 99973222111 1236788999999999999874 4679999999988888876
No 193
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.26 E-value=3.3e-10 Score=90.85 Aligned_cols=175 Identities=17% Similarity=0.178 Sum_probs=122.8
Q ss_pred cCCCCee---eccccceEeeeeecC------CCCceeeC-------CCCCeEEEEEC-------CCCCEEEEEeCCCcEE
Q 023642 93 YSGRGRF---SAADCCHMLSRYLPV------NGPWPVDQ-------TTSRAYVSQFS-------ADGSLFVAGFQASQIR 149 (279)
Q Consensus 93 ~~~~~~~---~~~d~~~~~~~~~~~------~~~~~l~~-------h~~~V~~~~~s-------pd~~~l~s~~~d~~i~ 149 (279)
.+|+|.- .+.|.++.+|++-+. ..+..+.. -...|+..+|- |+..++++.+++..|+
T Consensus 57 WSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh 136 (406)
T KOG2919|consen 57 WSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIH 136 (406)
T ss_pred eCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCcee
Confidence 4666552 467778888876431 11111222 24567777774 6788999999999999
Q ss_pred EEEcCCCeEEeeeeeccCCCc---ceEEEEECCCCCEEEEEeCCCeEEEEEC-CCCceeeeeccccccceeEEeeCCCCC
Q 023642 150 IYDVERGWKIQKDILAKSLRW---TVTDTSLSPDQRHLVYASMSPIVHIVDV-GSGTMESLANVTEIHDGLDFSAADDGG 225 (279)
Q Consensus 150 iwd~~~~~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (279)
+||.-+|+.... .....|.. ...+++|+|||.+|++|. .+.|++||+ +.|.-....... -++..+
T Consensus 137 ~wdaftG~lraS-y~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~---------~~~k~g 205 (406)
T KOG2919|consen 137 LWDAFTGKLRAS-YRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTV---------TKGKFG 205 (406)
T ss_pred eeeccccccccc-hhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhh---------hccccc
Confidence 999999954332 22233433 357899999999998764 568999999 555432111110 011123
Q ss_pred ccccEEEEEEecC-CCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEee
Q 023642 226 YSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 226 ~~~~v~~~~~sp~-g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~~ 278 (279)
..+.+.+++|+|- .+.++.|+....+-|+.-..+.+++.+-||.+.|+.+.+|
T Consensus 206 q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~ 259 (406)
T KOG2919|consen 206 QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWC 259 (406)
T ss_pred ccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEec
Confidence 5668999999996 4588999999999999999999999999999999998776
No 194
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1.2e-09 Score=96.04 Aligned_cols=127 Identities=20% Similarity=0.201 Sum_probs=92.5
Q ss_pred CCCCceeeCCCCCeEEEEECCCCCEEEEEeC---CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEE-EEeC
Q 023642 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASM 189 (279)
Q Consensus 114 ~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~ 189 (279)
......+..|...+...+|+|||+.|+..+. +..|.+||+.+++... +..+.+.+...+|+|||+.|+ +.+.
T Consensus 191 g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~la~~~~~ 266 (435)
T PRK05137 191 GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL----VGNFPGMTFAPRFSPDGRKVVMSLSQ 266 (435)
T ss_pred CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE----eecCCCcccCcEECCCCCEEEEEEec
Confidence 4445668889999999999999999887753 4689999999885432 234455678899999999875 4555
Q ss_pred CC--eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-C--CeEEEEECCCCeE
Q 023642 190 SP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-D--DCIYVYDLEANKL 261 (279)
Q Consensus 190 d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-d--~~i~vwd~~~~~~ 261 (279)
++ .|++||+.++....+.. +........|+|||++|+..+. + ..|++||+.+++.
T Consensus 267 ~g~~~Iy~~d~~~~~~~~Lt~-----------------~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~ 326 (435)
T PRK05137 267 GGNTDIYTMDLRSGTTTRLTD-----------------SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP 326 (435)
T ss_pred CCCceEEEEECCCCceEEccC-----------------CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe
Confidence 54 47888998877644322 2224566899999998887663 3 3699999876644
No 195
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=1.2e-10 Score=95.39 Aligned_cols=145 Identities=14% Similarity=0.146 Sum_probs=111.5
Q ss_pred cceEeeeeecCCCCcee-------e--CCCCCeEEEEECCC--CCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcce
Q 023642 104 CCHMLSRYLPVNGPWPV-------D--QTTSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTV 172 (279)
Q Consensus 104 ~~~~~~~~~~~~~~~~l-------~--~h~~~V~~~~~spd--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 172 (279)
..+.+|++....+.+.- . .-.-+++++.|-|. ...|++++.-++|++||...++.....+.+. +.++
T Consensus 173 n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~--E~~i 250 (412)
T KOG3881|consen 173 NELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL--ENPI 250 (412)
T ss_pred cceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc--cCcc
Confidence 45567776655322221 1 12456678889987 8899999999999999999775444434444 3489
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEE
Q 023642 173 TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 252 (279)
Q Consensus 173 ~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~ 252 (279)
+++...|++++|+++..-+.+..||++.+...... | ++-++.|.++..+|.++++++++-|+.|+
T Consensus 251 s~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~----------~-----kg~tGsirsih~hp~~~~las~GLDRyvR 315 (412)
T KOG3881|consen 251 SSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG----------L-----KGITGSIRSIHCHPTHPVLASCGLDRYVR 315 (412)
T ss_pred eeeeecCCCcEEEEecccchhheecccCceeeccc----------c-----CCccCCcceEEEcCCCceEEeeccceeEE
Confidence 99999999999999999999999999998864321 1 12456899999999999999999999999
Q ss_pred EEECCCCeEEEEE
Q 023642 253 VYDLEANKLSLRI 265 (279)
Q Consensus 253 vwd~~~~~~~~~~ 265 (279)
|+|+.+.+++...
T Consensus 316 IhD~ktrkll~kv 328 (412)
T KOG3881|consen 316 IHDIKTRKLLHKV 328 (412)
T ss_pred Eeecccchhhhhh
Confidence 9999997666444
No 196
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=2e-10 Score=100.83 Aligned_cols=162 Identities=16% Similarity=0.130 Sum_probs=108.4
Q ss_pred ccCCCCee---e-ccccceEeeeeec-CCCCceeeCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCeEEeeeeec
Q 023642 92 NYSGRGRF---S-AADCCHMLSRYLP-VNGPWPVDQTTSRAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILA 165 (279)
Q Consensus 92 ~~~~~~~~---~-~~d~~~~~~~~~~-~~~~~~l~~h~~~V~~~~~spd~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~ 165 (279)
.++++|+. . ..++...+|.+.. ......+..+...+...+|+|||+.|+.++ .++...||+++.........
T Consensus 254 ~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-- 331 (429)
T PRK01742 254 AFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-- 331 (429)
T ss_pred eECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--
Confidence 46777753 2 2344444554432 233445677777889999999999877554 57888888765321111211
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEe
Q 023642 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (279)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~ 245 (279)
.+.. ....|+|||++|+..+.++ +.+||+.++....+... + ....+.|+|||++|+++
T Consensus 332 -~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~----------------~--~~~~~~~sPdG~~i~~~ 389 (429)
T PRK01742 332 -GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST----------------F--LDESPSISPNGIMIIYS 389 (429)
T ss_pred -cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC----------------C--CCCCceECCCCCEEEEE
Confidence 2322 4578999999998887765 55699988875432211 0 22457899999999999
Q ss_pred cCCCeEEEEEC--CCCeEEEEEeCCCcceeEEEe
Q 023642 246 SSDDCIYVYDL--EANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 246 s~d~~i~vwd~--~~~~~~~~~~~h~~~v~~v~~ 277 (279)
+.++.+.+|.+ .+|+.++++.+|.+.+..+.+
T Consensus 390 s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~w 423 (429)
T PRK01742 390 STQGLGKVLQLVSADGRFKARLPGSDGQVKFPAW 423 (429)
T ss_pred EcCCCceEEEEEECCCCceEEccCCCCCCCCccc
Confidence 98888887775 358889999988877766544
No 197
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.25 E-value=9e-10 Score=88.12 Aligned_cols=85 Identities=20% Similarity=0.242 Sum_probs=74.5
Q ss_pred CceeeCCCCCeEEEEECCCCCEEEEEeCCCc-EEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 023642 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQ-IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (279)
Q Consensus 117 ~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (279)
+.++.+|.+.|.|++.+.+|.++|++|..|+ |||||..+|..+........+ ..|.+++|+|+..+|+++|..|+++|
T Consensus 174 p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~-A~iy~iaFSp~~s~LavsSdKgTlHi 252 (346)
T KOG2111|consen 174 PSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR-ADIYCIAFSPNSSWLAVSSDKGTLHI 252 (346)
T ss_pred ceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch-heEEEEEeCCCccEEEEEcCCCeEEE
Confidence 5789999999999999999999999999996 799999999888775443333 45999999999999999999999999
Q ss_pred EECCCCc
Q 023642 196 VDVGSGT 202 (279)
Q Consensus 196 ~d~~~~~ 202 (279)
|.++...
T Consensus 253 F~l~~~~ 259 (346)
T KOG2111|consen 253 FSLRDTE 259 (346)
T ss_pred EEeecCC
Confidence 9987643
No 198
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.24 E-value=2.7e-10 Score=100.73 Aligned_cols=174 Identities=13% Similarity=0.068 Sum_probs=125.2
Q ss_pred ceEeeeeecCCCCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEE---eeeeeccCCCcceEEEEECCC
Q 023642 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKI---QKDILAKSLRWTVTDTSLSPD 180 (279)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~v~~~~~sp~ 180 (279)
...+|++.....+.....-...|+++.|+| +..+++.|..+|+|.+||+..+... ........|..+++.+.|-.+
T Consensus 223 ~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~ 302 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN 302 (555)
T ss_pred eEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc
Confidence 688899988877888888899999999999 7788899999999999999876431 112234678899999999775
Q ss_pred CCE--EEEEeCCCeEEEEECCCCceeeeecccccc-------------ceeEEeeCCC----------------------
Q 023642 181 QRH--LVYASMSPIVHIVDVGSGTMESLANVTEIH-------------DGLDFSAADD---------------------- 223 (279)
Q Consensus 181 ~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-------------~~~~~~~~~~---------------------- 223 (279)
..- +++++.||.|..|+++.-............ ..+.|.....
T Consensus 303 ~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~ 382 (555)
T KOG1587|consen 303 EHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTP 382 (555)
T ss_pred CCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcc
Confidence 544 999999999999988653321000000000 0011111100
Q ss_pred ------------CCccccEEEEEEecCCCEEEEecCCCeEEEEECC-CCeEEEEEeCCCcceeEEEee
Q 023642 224 ------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 224 ------------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~-~~~~~~~~~~h~~~v~~v~~~ 278 (279)
..|.+.|+++.++|-+..++..+.|-+|++|.-. ...++..+..+...|.++.++
T Consensus 383 ~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWS 450 (555)
T KOG1587|consen 383 APEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWS 450 (555)
T ss_pred cccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEc
Confidence 3367889999999987766555559999999988 677888888787778877765
No 199
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=8.4e-10 Score=89.78 Aligned_cols=139 Identities=20% Similarity=0.170 Sum_probs=100.3
Q ss_pred eccccceEeeeeecCCCCceeeC-CCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCeEEee-----------eeecc
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQ-TTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQK-----------DILAK 166 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~spd-~~~l~s~~~d~~i~iwd~~~~~~~~~-----------~~~~~ 166 (279)
...|+.+.+++-.. ..+..++. -...|++++|-|. ++.|+.|+. +-|++|..+....... +....
T Consensus 116 a~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~p 193 (445)
T KOG2139|consen 116 ATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDP 193 (445)
T ss_pred hccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCC
Confidence 45677777766555 23333433 4577999999994 456777777 5699998764311111 11123
Q ss_pred CCCcceEEEEECCCCCEEEEEe-CCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEe
Q 023642 167 SLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (279)
Q Consensus 167 ~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~ 245 (279)
+| .+|+++.|.+||..+++++ .|..|.|||..++....+... .-+.+.-+.|||||.+|+.+
T Consensus 194 gh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~----------------glgg~slLkwSPdgd~lfaA 256 (445)
T KOG2139|consen 194 GH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK----------------GLGGFSLLKWSPDGDVLFAA 256 (445)
T ss_pred CC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc----------------CCCceeeEEEcCCCCEEEEe
Confidence 44 5799999999999999888 567899999999998766522 12367889999999999999
Q ss_pred cCCCeEEEEECC
Q 023642 246 SSDDCIYVYDLE 257 (279)
Q Consensus 246 s~d~~i~vwd~~ 257 (279)
.-|+..++|+..
T Consensus 257 t~davfrlw~e~ 268 (445)
T KOG2139|consen 257 TCDAVFRLWQEN 268 (445)
T ss_pred cccceeeeehhc
Confidence 999999999543
No 200
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=1.6e-09 Score=95.37 Aligned_cols=145 Identities=22% Similarity=0.240 Sum_probs=94.2
Q ss_pred CCCCceeeCCCCCeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEE-EEeC
Q 023642 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASM 189 (279)
Q Consensus 114 ~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~ 189 (279)
...+..+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.... ....+....++|+|||+.|+ +.+.
T Consensus 193 g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l----~~~~g~~~~~~~SpDG~~l~~~~s~ 268 (433)
T PRK04922 193 GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV----ASFRGINGAPSFSPDGRRLALTLSR 268 (433)
T ss_pred CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe----ccCCCCccCceECCCCCEEEEEEeC
Confidence 44456677888899999999999999887643 4699999988854322 23334456789999999875 4455
Q ss_pred CC--eEEEEECCCCceeeeeccccccceeEEeeCCC--------------------CC-------ccccEEEEEEecCCC
Q 023642 190 SP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADD--------------------GG-------YSFGIFSLKFSTDGR 240 (279)
Q Consensus 190 d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~-------~~~~v~~~~~sp~g~ 240 (279)
++ .|++||+.+++...+...........|++++. .+ +.......+|+|||+
T Consensus 269 ~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~ 348 (433)
T PRK04922 269 DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGK 348 (433)
T ss_pred CCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCC
Confidence 54 69999998887654432211111122222221 00 011223578999999
Q ss_pred EEEEecCCC---eEEEEECCCCeEE
Q 023642 241 ELVAGSSDD---CIYVYDLEANKLS 262 (279)
Q Consensus 241 ~l~t~s~d~---~i~vwd~~~~~~~ 262 (279)
+++..+.++ .|.+||+.+++..
T Consensus 349 ~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 349 KIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred EEEEEECCCCceeEEEEECCCCCeE
Confidence 988654332 6999999877654
No 201
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.21 E-value=9.9e-10 Score=87.91 Aligned_cols=141 Identities=14% Similarity=0.145 Sum_probs=97.7
Q ss_pred ccceEeeeeec-CCCCceeeCC--CCCeEEEEECCCCCEEEE-EeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEEC
Q 023642 103 DCCHMLSRYLP-VNGPWPVDQT--TSRAYVSQFSADGSLFVA-GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (279)
Q Consensus 103 d~~~~~~~~~~-~~~~~~l~~h--~~~V~~~~~spd~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 178 (279)
...+.+|.+-. ......+... ...+.++.-+.+..+||. |-.-|+|.|-|+.....- .......|...|.+++++
T Consensus 112 ~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln 190 (346)
T KOG2111|consen 112 ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN-APSIINAHDSDIACVALN 190 (346)
T ss_pred cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC-CceEEEcccCceeEEEEc
Confidence 44455555542 2222333322 233444333334445544 456689999999865431 112346899999999999
Q ss_pred CCCCEEEEEeCCCe-EEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 179 PDQRHLVYASMSPI-VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 179 p~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
.+|..+|++|..|+ |||||..+|....-. .++. ....|++++|||+..+|+.+|.-|+|+||.++
T Consensus 191 ~~Gt~vATaStkGTLIRIFdt~~g~~l~E~--RRG~------------d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 191 LQGTLVATASTKGTLIRIFDTEDGTLLQEL--RRGV------------DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred CCccEEEEeccCcEEEEEEEcCCCcEeeee--ecCC------------chheEEEEEeCCCccEEEEEcCCCeEEEEEee
Confidence 99999999999987 899999999874432 2221 23479999999999999999999999999987
Q ss_pred C
Q 023642 258 A 258 (279)
Q Consensus 258 ~ 258 (279)
.
T Consensus 257 ~ 257 (346)
T KOG2111|consen 257 D 257 (346)
T ss_pred c
Confidence 5
No 202
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=4.5e-10 Score=100.36 Aligned_cols=149 Identities=13% Similarity=0.034 Sum_probs=112.4
Q ss_pred ccccceEeeeeecCC----CCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC--CeEEeeeeeccCCCcceEE
Q 023642 101 AADCCHMLSRYLPVN----GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER--GWKIQKDILAKSLRWTVTD 174 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~----~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~v~~ 174 (279)
..++....|...... ....-..|.-.+++.++||.++++++|..||+|.+|.-.. .... ....++=|...|.+
T Consensus 178 ~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~-t~t~lHWH~~~V~~ 256 (792)
T KOG1963|consen 178 VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE-TCTLLHWHHDEVNS 256 (792)
T ss_pred EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc-cceEEEecccccce
Confidence 345555555544322 1122356777799999999999999999999999996433 2211 11234566678999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEE
Q 023642 175 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY 254 (279)
Q Consensus 175 ~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vw 254 (279)
++|+++|.+|++|+..+.+-+|.+.+++...+++. .++|..+.+|||+...+....|+.|.+-
T Consensus 257 L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRL-----------------gs~I~~i~vS~ds~~~sl~~~DNqI~li 319 (792)
T KOG1963|consen 257 LSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRL-----------------GSPILHIVVSPDSDLYSLVLEDNQIHLI 319 (792)
T ss_pred eEEecCCceEeecccceEEEEEeecCCCccccccc-----------------CCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence 99999999999999999999999999986655543 2489999999999999999999999999
Q ss_pred ECCCCeEEEEEeC
Q 023642 255 DLEANKLSLRILA 267 (279)
Q Consensus 255 d~~~~~~~~~~~~ 267 (279)
...+-....++.|
T Consensus 320 ~~~dl~~k~tIsg 332 (792)
T KOG1963|consen 320 KASDLEIKSTISG 332 (792)
T ss_pred eccchhhhhhccC
Confidence 8866554444444
No 203
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=2.9e-09 Score=93.40 Aligned_cols=154 Identities=18% Similarity=0.204 Sum_probs=93.6
Q ss_pred eeeCCCCCeEEEEECCCCCEEEEE-eCCC--cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC-C--e
Q 023642 119 PVDQTTSRAYVSQFSADGSLFVAG-FQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-P--I 192 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~~l~s~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~--~ 192 (279)
.+......+..++|+|||+.|+.. +.++ .|.+||+.++.... +..+...+....|+|||+.|+..+.+ + .
T Consensus 237 ~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~ 312 (429)
T PRK03629 237 QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQ 312 (429)
T ss_pred EccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCCEEEEEeCCCCCce
Confidence 344445556678999999988754 4444 58899998875432 22334457889999999998877654 3 4
Q ss_pred EEEEECCCCceeeeeccccccceeEEeeCCC--------------------CCc------cccEEEEEEecCCCEEEEec
Q 023642 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADD--------------------GGY------SFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~------~~~v~~~~~sp~g~~l~t~s 246 (279)
|+++|+.++....+...........+++++. .+. ........|+|||++|+.++
T Consensus 313 Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s 392 (429)
T PRK03629 313 VYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSS 392 (429)
T ss_pred EEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEE
Confidence 6666777765543322111111112222221 000 01123567899999888877
Q ss_pred CCC---eEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 247 SDD---CIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 247 ~d~---~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
.++ .+.++++ +|.....+.+|.+.+..+.+
T Consensus 393 ~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~W 425 (429)
T PRK03629 393 SQGMGSVLNLVST-DGRFKARLPATDGQVKFPAW 425 (429)
T ss_pred cCCCceEEEEEEC-CCCCeEECccCCCCcCCccc
Confidence 665 3677777 46666777777776665543
No 204
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=7.7e-11 Score=101.29 Aligned_cols=145 Identities=10% Similarity=0.055 Sum_probs=110.5
Q ss_pred eeccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEEC
Q 023642 99 FSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (279)
Q Consensus 99 ~~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 178 (279)
|.+....++++++........+......|..++++|.|..|+.|+.|++++.+|++-+.+..+ .++.|...+++++||
T Consensus 582 fVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk--~lr~H~~avr~Va~H 659 (733)
T KOG0650|consen 582 FVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYK--TLRLHEKAVRSVAFH 659 (733)
T ss_pred EEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhH--Hhhhhhhhhhhhhhc
Confidence 356677778888877555556677788999999999999999999999999999987654433 357888899999999
Q ss_pred CCCCEEEEEeCCCeEEEEEC------CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEE
Q 023642 179 PDQRHLVYASMSPIVHIVDV------GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 252 (279)
Q Consensus 179 p~~~~l~~~~~d~~i~i~d~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~ 252 (279)
+.=.++++|+.|+++.||.- .....+...+....+. . .....|..+.|+|...+|++++.|++|+
T Consensus 660 ~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~--------~-~~~~gVLd~~wHP~qpWLfsAGAd~tir 730 (733)
T KOG0650|consen 660 KRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE--------K-TNDLGVLDTIWHPRQPWLFSAGADGTIR 730 (733)
T ss_pred cccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce--------e-ecccceEeecccCCCceEEecCCCceEE
Confidence 99999999999999999842 1111111111111111 1 0123588999999999999999999999
Q ss_pred EE
Q 023642 253 VY 254 (279)
Q Consensus 253 vw 254 (279)
+|
T Consensus 731 lf 732 (733)
T KOG0650|consen 731 LF 732 (733)
T ss_pred ee
Confidence 98
No 205
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=6.3e-09 Score=91.30 Aligned_cols=126 Identities=18% Similarity=0.221 Sum_probs=88.1
Q ss_pred CCCceeeCCCCCeEEEEECCCCCEEEEEe---CCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEE-eCC
Q 023642 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGF---QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMS 190 (279)
Q Consensus 115 ~~~~~l~~h~~~V~~~~~spd~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d 190 (279)
.....+..+...+...+|||||+.|+..+ .+..|.+||+.+++.... ....+.+..++|+|||+.|+.. +.+
T Consensus 189 ~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l----~~~~~~~~~~~~SPDG~~La~~~~~~ 264 (429)
T PRK03629 189 YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV----ASFPRHNGAPAFSPDGSKLAFALSKT 264 (429)
T ss_pred CCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc----cCCCCCcCCeEECCCCCEEEEEEcCC
Confidence 34455777788999999999999998654 245799999988854321 2223345678999999988765 334
Q ss_pred C--eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC-C--eEEEEECCCCeE
Q 023642 191 P--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-D--CIYVYDLEANKL 261 (279)
Q Consensus 191 ~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d-~--~i~vwd~~~~~~ 261 (279)
+ .|++||+.++....+.. +...+....|+|||+.|+..+.+ + .|+++|+.+++.
T Consensus 265 g~~~I~~~d~~tg~~~~lt~-----------------~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 265 GSLNLYVMDLASGQIRQVTD-----------------GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred CCcEEEEEECCCCCEEEccC-----------------CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 4 59999999887643321 11246778999999988776643 3 566668776644
No 206
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.17 E-value=1e-10 Score=98.51 Aligned_cols=160 Identities=14% Similarity=0.090 Sum_probs=114.7
Q ss_pred ccccceEeeeeecCC--CCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEEC
Q 023642 101 AADCCHMLSRYLPVN--GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~--~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 178 (279)
+.|+.+.+|.-.... .+.+-..-.+.-.|++......++++|+..+.|+|||+....+.+. +.+|...|+++.+.
T Consensus 54 ~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~---lkdh~stvt~v~YN 130 (673)
T KOG4378|consen 54 AGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRF---LKDHQSTVTYVDYN 130 (673)
T ss_pred CCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhh---ccCCcceeEEEEec
Confidence 455556656443221 1111122223455666555668999999999999999996544333 57999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEE-EEecCCCeEEEEECC
Q 023642 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLE 257 (279)
Q Consensus 179 p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l-~t~s~d~~i~vwd~~ 257 (279)
....|||+++..|.|.|..+.++......... ..+.|.-+.|+|..+++ .+++.+|.|.+||+.
T Consensus 131 ~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~---------------sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~ 195 (673)
T KOG4378|consen 131 NTDEYIASVSDGGDIIIHGTKTKQKTTTFTID---------------SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ 195 (673)
T ss_pred CCcceeEEeccCCcEEEEecccCccccceecC---------------CCCeEEEeecccccceeeEeeccCCeEEEEecc
Confidence 99999999999999999999987764322211 12356789999987765 578899999999998
Q ss_pred CCeEEEEE-eCCCcceeEEEee
Q 023642 258 ANKLSLRI-LAHTVNIALWITC 278 (279)
Q Consensus 258 ~~~~~~~~-~~h~~~v~~v~~~ 278 (279)
...+...+ ..|..+...++.|
T Consensus 196 g~sp~~~~~~~HsAP~~gicfs 217 (673)
T KOG4378|consen 196 GMSPIFHASEAHSAPCRGICFS 217 (673)
T ss_pred CCCcccchhhhccCCcCcceec
Confidence 87777665 4788887776654
No 207
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=5.4e-09 Score=91.75 Aligned_cols=173 Identities=20% Similarity=0.186 Sum_probs=100.9
Q ss_pred hccccCccCCCCeeeccc-cceEeeeee-cCCCCceeeCCCCCeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeEEe
Q 023642 86 LAGREGNYSGRGRFSAAD-CCHMLSRYL-PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQ 160 (279)
Q Consensus 86 ~~~~~~~~~~~~~~~~~d-~~~~~~~~~-~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d---~~i~iwd~~~~~~~~ 160 (279)
+.+....|+....|.+.. ....+|... .......+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++...
T Consensus 155 ~tg~~g~f~~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~ 234 (427)
T PRK02889 155 LTGERGVFSTRIAYVIKTGNRYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV 234 (427)
T ss_pred hcCCCcccccEEEEEEccCCccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE
Confidence 444344454444443322 222233222 233445577888899999999999999877643 369999999885432
Q ss_pred eeeeccCCCcceEEEEECCCCCEEE-EEeCCCeEEEE--ECCCCceeeeeccccccceeEEeeCCC--------------
Q 023642 161 KDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIV--DVGSGTMESLANVTEIHDGLDFSAADD-------------- 223 (279)
Q Consensus 161 ~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 223 (279)
. ....+.+...+|+|||+.|+ +.+.++...|| |+.++....+...........|++++.
T Consensus 235 l----~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~I 310 (427)
T PRK02889 235 V----ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQI 310 (427)
T ss_pred e----ecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEE
Confidence 2 22334567899999999886 45667765554 555554433322111111122322222
Q ss_pred ------CC-------ccccEEEEEEecCCCEEEEecCCC---eEEEEECCCCeEE
Q 023642 224 ------GG-------YSFGIFSLKFSTDGRELVAGSSDD---CIYVYDLEANKLS 262 (279)
Q Consensus 224 ------~~-------~~~~v~~~~~sp~g~~l~t~s~d~---~i~vwd~~~~~~~ 262 (279)
.+ .........|+|||++|+..+.++ .|++||+.+++..
T Consensus 311 y~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~ 365 (427)
T PRK02889 311 YRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT 365 (427)
T ss_pred EEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE
Confidence 00 001123467999999988766543 6999999877654
No 208
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.15 E-value=6.4e-09 Score=89.51 Aligned_cols=123 Identities=17% Similarity=0.117 Sum_probs=105.2
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccce
Q 023642 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (279)
Q Consensus 136 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 215 (279)
-..++-|...|.|.+|+...|+...+. ....|.+.|.++.++.+-..|.+++.|+.+..|+...+...+..+..
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~-st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~----- 143 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKL-STDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ----- 143 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEE-ecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC-----
Confidence 347788889999999999999665553 34688899999999999999999999999999999998876554332
Q ss_pred eEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 216 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
...+.+++.+|||..+++++ +.|++||+.+++.+.+|+||.++|+++..
T Consensus 144 -----------~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f 192 (541)
T KOG4547|consen 144 -----------KPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSF 192 (541)
T ss_pred -----------CCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEE
Confidence 22688999999999999887 68999999999999999999999998864
No 209
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.14 E-value=4.2e-10 Score=87.86 Aligned_cols=144 Identities=15% Similarity=0.179 Sum_probs=104.7
Q ss_pred CCCCeEEEEECC-CCC--EEEEEeCCCcEEEEEcCCCeEEee-------eeeccCCCcceEEEEECCCCCEEEEEeCCCe
Q 023642 123 TTSRAYVSQFSA-DGS--LFVAGFQASQIRIYDVERGWKIQK-------DILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (279)
Q Consensus 123 h~~~V~~~~~sp-d~~--~l~s~~~d~~i~iwd~~~~~~~~~-------~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~ 192 (279)
-.+.+++..+.- ++. ++++|-++|.+.+||+.++..+-. ......|..+|.++.+.+.-..=++++.+..
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk 228 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK 228 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence 356677777544 333 457788999999999998733211 1223578889999999987666677888888
Q ss_pred EEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcce
Q 023642 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNI 272 (279)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v 272 (279)
+..|.+............ ..- .+-.|..+..-||++.+||++.|+.|+||+.++..++..+..|.+.|
T Consensus 229 l~~~Sl~~s~gslq~~~e-------~~l-----knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagv 296 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKE-------ITL-----KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGV 296 (323)
T ss_pred ceeeeeccccCcccccce-------EEe-----cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcce
Confidence 888887643211000000 000 11257788899999999999999999999999999999999999999
Q ss_pred eEEEee
Q 023642 273 ALWITC 278 (279)
Q Consensus 273 ~~v~~~ 278 (279)
++|...
T Consensus 297 n~vAfs 302 (323)
T KOG0322|consen 297 NAVAFS 302 (323)
T ss_pred eEEEeC
Confidence 999753
No 210
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=1.1e-09 Score=88.42 Aligned_cols=152 Identities=14% Similarity=0.173 Sum_probs=112.8
Q ss_pred eccccceEeeeeecCCCCce--eeCCC-CCeEEEEECCCCCEEEEEeC----CCcEEEEEcCCCeE-EeeeeeccCCCcc
Q 023642 100 SAADCCHMLSRYLPVNGPWP--VDQTT-SRAYVSQFSADGSLFVAGFQ----ASQIRIYDVERGWK-IQKDILAKSLRWT 171 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~--l~~h~-~~V~~~~~spd~~~l~s~~~----d~~i~iwd~~~~~~-~~~~~~~~~~~~~ 171 (279)
.+.|+.+.+|++......-. .+++. .+..+++.+-.++.+++|.. |-.|.+||++..+. +.. ....|...
T Consensus 90 ~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~--~~eSH~DD 167 (376)
T KOG1188|consen 90 CSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ--LNESHNDD 167 (376)
T ss_pred eccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh--hhhhccCc
Confidence 46788999999987554432 45555 56788888878888888853 66899999987755 333 34678889
Q ss_pred eEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCC-CEEEEecCCC
Q 023642 172 VTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDD 249 (279)
Q Consensus 172 v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~t~s~d~ 249 (279)
|+++.|+| +.+.|++||.||.|.+||+............. .|...|.++.|..++ +.+.+-+...
T Consensus 168 VT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-------------N~~sSI~~igw~~~~ykrI~clTH~E 234 (376)
T KOG1188|consen 168 VTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-------------NHGSSIHLIGWLSKKYKRIMCLTHME 234 (376)
T ss_pred ceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh-------------cccceeeeeeeecCCcceEEEEEccC
Confidence 99999999 55789999999999999998754321111000 134479999999876 3577888999
Q ss_pred eEEEEECCCCeEEEEEe
Q 023642 250 CIYVYDLEANKLSLRIL 266 (279)
Q Consensus 250 ~i~vwd~~~~~~~~~~~ 266 (279)
+..+|++..+.+...+.
T Consensus 235 tf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 235 TFAIYELEDGSEETWLE 251 (376)
T ss_pred ceeEEEccCCChhhccc
Confidence 99999999887766654
No 211
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.12 E-value=3.3e-09 Score=98.18 Aligned_cols=159 Identities=14% Similarity=0.115 Sum_probs=110.8
Q ss_pred eeCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCC----eEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEE
Q 023642 120 VDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERG----WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~-~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~ 194 (279)
+..|...|..++.+++. .+|++|+.||+|++|++..- ...+...........+..+.+.+.+..+|.++.||.|+
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEE
Confidence 56788889899988755 99999999999999998642 11111112222456799999999999999999999999
Q ss_pred EEECCCC--ceeee---eccccccceeEEeeCCC----------------------------------CCccccEEEEEE
Q 023642 195 IVDVGSG--TMESL---ANVTEIHDGLDFSAADD----------------------------------GGYSFGIFSLKF 235 (279)
Q Consensus 195 i~d~~~~--~~~~~---~~~~~~~~~~~~~~~~~----------------------------------~~~~~~v~~~~~ 235 (279)
+.++.-- ..... ........+.....+.. ....+.|++++.
T Consensus 1124 ~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~i 1203 (1431)
T KOG1240|consen 1124 VLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVI 1203 (1431)
T ss_pred EEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEe
Confidence 9988651 11100 00000001111110000 223578999999
Q ss_pred ecCCCEEEEecCCCeEEEEECCCCeEEEEEe-CCCcceeEEEee
Q 023642 236 STDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTVNIALWITC 278 (279)
Q Consensus 236 sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~-~h~~~v~~v~~~ 278 (279)
+|.+.+++.|+..|.+.+||++=+.++..+. .+..+|+.|..|
T Consensus 1204 dp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~ 1247 (1431)
T KOG1240|consen 1204 DPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLC 1247 (1431)
T ss_pred cCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEee
Confidence 9999999999999999999999888888876 455677766654
No 212
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.10 E-value=1.5e-08 Score=86.02 Aligned_cols=158 Identities=16% Similarity=0.219 Sum_probs=95.5
Q ss_pred cCCCCee--ec--cccceEeeeeecCCCC-cee--eCCCCCeEEEEECCCCCEEEEE-eCCCcEEEEEcCCCeEEee---
Q 023642 93 YSGRGRF--SA--ADCCHMLSRYLPVNGP-WPV--DQTTSRAYVSQFSADGSLFVAG-FQASQIRIYDVERGWKIQK--- 161 (279)
Q Consensus 93 ~~~~~~~--~~--~d~~~~~~~~~~~~~~-~~l--~~h~~~V~~~~~spd~~~l~s~-~~d~~i~iwd~~~~~~~~~--- 161 (279)
+++++++ .+ .++.+.+|++...... ..+ ..+......++++|++++++++ ..++.|.+||+.+...+..
T Consensus 87 ~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~ 166 (330)
T PRK11028 87 TDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEP 166 (330)
T ss_pred ECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCC
Confidence 4555543 22 2566777776432111 111 1233456778999999988655 4568999999976322211
Q ss_pred -eeeccCCCcceEEEEECCCCCEEEEEeC-CCeEEEEECCC--CceeeeeccccccceeEEeeCCCCCccccEEEEEEec
Q 023642 162 -DILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGS--GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST 237 (279)
Q Consensus 162 -~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 237 (279)
.... ........++|+|+|+++++++. ++.|.+||+.. +............ .... +......+.|+|
T Consensus 167 ~~~~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p------~~~~--~~~~~~~i~~~p 237 (330)
T PRK11028 167 AEVTT-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMP------ADFS--DTRWAADIHITP 237 (330)
T ss_pred Cceec-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCC------CcCC--CCccceeEEECC
Confidence 0111 11234678999999999988775 89999999974 3332221111000 0000 112345789999
Q ss_pred CCCEEEEecC-CCeEEEEECCCC
Q 023642 238 DGRELVAGSS-DDCIYVYDLEAN 259 (279)
Q Consensus 238 ~g~~l~t~s~-d~~i~vwd~~~~ 259 (279)
+|++++++.. ++.|.+|++...
T Consensus 238 dg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 238 DGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred CCCEEEEecCCCCeEEEEEEeCC
Confidence 9999998864 789999998643
No 213
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=2.7e-09 Score=91.64 Aligned_cols=156 Identities=13% Similarity=0.107 Sum_probs=111.2
Q ss_pred cceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeee---ccCCCc-----ceEEE
Q 023642 104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL---AKSLRW-----TVTDT 175 (279)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~-----~v~~~ 175 (279)
..+...++..+.-...+....+.++++..++-..+|++|+.+|.|-.||.+....+..+-. ...|.+ .|+++
T Consensus 155 ~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal 234 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTAL 234 (703)
T ss_pred cceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEE
Confidence 3333334433333334566679999999999999999999999999999987543332211 122333 49999
Q ss_pred EECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC--CCEEEEecCCCeEEE
Q 023642 176 SLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYV 253 (279)
Q Consensus 176 ~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~t~s~d~~i~v 253 (279)
.|+.+|-.+++|..+|.+.|||+++.+........ +..+|..+.|.+. ...+++. ....++|
T Consensus 235 ~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~---------------~e~pi~~l~~~~~~~q~~v~S~-Dk~~~ki 298 (703)
T KOG2321|consen 235 KFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHG---------------YELPIKKLDWQDTDQQNKVVSM-DKRILKI 298 (703)
T ss_pred EecCCceeEEeeccCCcEEEEEcccCCceeecccC---------------CccceeeecccccCCCceEEec-chHHhhh
Confidence 99999999999999999999999998875443321 3458899999775 3445543 3568999
Q ss_pred EECCCCeEEEEEeCCCcceeEEE
Q 023642 254 YDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 254 wd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
||-.+|++...+... .+++.++
T Consensus 299 Wd~~~Gk~~asiEpt-~~lND~C 320 (703)
T KOG2321|consen 299 WDECTGKPMASIEPT-SDLNDFC 320 (703)
T ss_pred cccccCCceeecccc-CCcCcee
Confidence 999999999888743 3355443
No 214
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.08 E-value=2.2e-10 Score=95.86 Aligned_cols=130 Identities=14% Similarity=0.061 Sum_probs=107.1
Q ss_pred ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 023642 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d 197 (279)
+++..| ..|..+.|-|-.=+|++++..|.++.-|+.+|+.+.. +....+.+..+.-+|-.-.+-.|...|+|.+|.
T Consensus 204 HClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~---~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWS 279 (545)
T KOG1272|consen 204 HCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVAS---IRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWS 279 (545)
T ss_pred eehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHH---HHccCCccchhhcCCccceEEEcCCCceEEecC
Confidence 445555 6688899999988999999999999999999977665 344455788889999888999999999999999
Q ss_pred CCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
....+... +.. .|.++|.++++.++|+|++|.+.|..++|||++.-..+.++..
T Consensus 280 P~skePLv--KiL--------------cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 280 PNSKEPLV--KIL--------------CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred CCCcchHH--HHH--------------hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence 88766522 111 1788999999999999999999999999999998776666654
No 215
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.08 E-value=2.3e-08 Score=84.81 Aligned_cols=122 Identities=10% Similarity=0.125 Sum_probs=80.5
Q ss_pred CCeEEEEECCCCCEEEEEeC-CCcEEEEEcCC-CeEEeeeeeccCCCcceEEEEECCCCCEEEEEe-CCCeEEEEECCCC
Q 023642 125 SRAYVSQFSADGSLFVAGFQ-ASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSG 201 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~-d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~ 201 (279)
+....++|+|++++|++++. ++.|.+|++++ +......... .+......++++|+++++++++ .++.|.+||+.+.
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 45678999999999887764 78999999974 3111111111 2223467789999999986554 6699999999763
Q ss_pred ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-CCeEEEEECC
Q 023642 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLE 257 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-d~~i~vwd~~ 257 (279)
.......... .... .+ .....+.|+|+|++++++.. +++|.+|++.
T Consensus 159 g~l~~~~~~~----~~~~-~g-----~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 159 GHLVAQEPAE----VTTV-EG-----AGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred CcccccCCCc----eecC-CC-----CCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 3211000000 0000 00 13567899999999988776 8899999997
No 216
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=5.1e-10 Score=95.53 Aligned_cols=166 Identities=14% Similarity=0.179 Sum_probs=115.6
Q ss_pred hhhccccCc-----cCCCCee---eccccceEeeeeecCCCCce-eeCCCCCeEEEEECC--CCCEEEEEeCCCcEEEEE
Q 023642 84 KMLAGREGN-----YSGRGRF---SAADCCHMLSRYLPVNGPWP-VDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYD 152 (279)
Q Consensus 84 ~~~~~~~~~-----~~~~~~~---~~~d~~~~~~~~~~~~~~~~-l~~h~~~V~~~~~sp--d~~~l~s~~~d~~i~iwd 152 (279)
+.|.||++. ...+|.+ ++.|..+++|+.+.-...+. -++|...|.++.|-| +.+.+++|..|..|+++|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 446666653 3445555 45677899999886554444 479999999999999 567889999999999999
Q ss_pred cCCCe-------EEeeeeeccCCCcceEEEEECCCC-CEEEEEeCCCeEEEEECCCCceeeeeccccccce-eEEeeCCC
Q 023642 153 VERGW-------KIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG-LDFSAADD 223 (279)
Q Consensus 153 ~~~~~-------~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~ 223 (279)
+...+ ..........|...|..++-.|++ ..+.+++.||+++-+|++....... ...++.. ..+.+
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p--~~~~~~~l~ny~~--- 198 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP--DEDCPSILVNYNP--- 198 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc--cccccHHHHHhch---
Confidence 98521 111222345778889999999998 6788999999999999987443110 0000000 00100
Q ss_pred CCccccEEEEEEecCC-CEEEEecCCCeEEEEEC
Q 023642 224 GGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDL 256 (279)
Q Consensus 224 ~~~~~~v~~~~~sp~g-~~l~t~s~d~~i~vwd~ 256 (279)
..-...++..+|.. .+|+.|+.|-..++||.
T Consensus 199 --~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 199 --QLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred --hhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 11146788999974 47889999999999995
No 217
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.07 E-value=9.4e-09 Score=81.52 Aligned_cols=136 Identities=12% Similarity=0.065 Sum_probs=97.3
Q ss_pred eccccceEeeeeecCCC---CceeeCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCe-------------EEe--
Q 023642 100 SAADCCHMLSRYLPVNG---PWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGW-------------KIQ-- 160 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~---~~~l~~h~~~V~~~~~spd~-~~l~s~~~d~~i~iwd~~~~~-------------~~~-- 160 (279)
++-|.+..+|++..... ...+-+|...|+.++|..++ +.||+.+.||.||+||++.-+ ++.
T Consensus 169 SSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRL 248 (364)
T KOG0290|consen 169 SSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRL 248 (364)
T ss_pred ecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceee
Confidence 56788899999988633 34588999999999999865 467899999999999997421 010
Q ss_pred ------------------------------eeeeccCCCcceEEEEECCC-CCEEEEEeCCCeEEEEECCCCceeeeecc
Q 023642 161 ------------------------------KDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANV 209 (279)
Q Consensus 161 ------------------------------~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 209 (279)
.+..+++|++.|.+++|.|. ...|++++.|..+.+||+..-......
T Consensus 249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~-- 326 (364)
T KOG0290|consen 249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGE-- 326 (364)
T ss_pred ccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCC--
Confidence 01124589999999999995 567999999999999999763321110
Q ss_pred ccccceeEEeeCCCCCccccEEEEEEecC-CCEEEEec
Q 023642 210 TEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGS 246 (279)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~t~s 246 (279)
... +.+. -.+.|+.+.|++. +.+++.+.
T Consensus 327 -dPi--lay~------a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 327 -DPI--LAYT------AGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred -Cch--hhhh------ccceeeeeeecccCCCEEEEEe
Confidence 000 0111 1237999999965 66777665
No 218
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=2.2e-08 Score=88.17 Aligned_cols=135 Identities=18% Similarity=0.120 Sum_probs=91.1
Q ss_pred cceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEE-EEeCCCc--EEEEEcCCCeEEeeeeeccCCCcceEEEEECCC
Q 023642 104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFV-AGFQASQ--IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180 (279)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~-s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 180 (279)
..+.+|++... ....+..+.+.+...+|+|||+.|+ +.+.++. |.+||+.++.... +..+........|+||
T Consensus 226 ~~i~~~dl~~g-~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~----Lt~~~~~~~~~~~spD 300 (435)
T PRK05137 226 PRVYLLDLETG-QRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR----LTDSPAIDTSPSYSPD 300 (435)
T ss_pred CEEEEEECCCC-cEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE----ccCCCCccCceeEcCC
Confidence 34555555332 2344666777888999999999875 5555554 7777988875432 2345555677899999
Q ss_pred CCEEEEEeC-C--CeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC---CeEEEE
Q 023642 181 QRHLVYASM-S--PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---DCIYVY 254 (279)
Q Consensus 181 ~~~l~~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d---~~i~vw 254 (279)
|+.|+..+. + ..|+++|+.++....+.. +...+....|+|||++|+..+.+ ..|.+|
T Consensus 301 G~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~-----------------~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~ 363 (435)
T PRK05137 301 GSQIVFESDRSGSPQLYVMNADGSNPRRISF-----------------GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVM 363 (435)
T ss_pred CCEEEEEECCCCCCeEEEEECCCCCeEEeec-----------------CCCcccCeEECCCCCEEEEEEcCCCceEEEEE
Confidence 999887663 3 368888988776543321 11145567899999999876543 368899
Q ss_pred ECCCCe
Q 023642 255 DLEANK 260 (279)
Q Consensus 255 d~~~~~ 260 (279)
|+.++.
T Consensus 364 d~~~~~ 369 (435)
T PRK05137 364 KPDGSG 369 (435)
T ss_pred ECCCCc
Confidence 986543
No 219
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=3.3e-08 Score=87.04 Aligned_cols=128 Identities=17% Similarity=0.184 Sum_probs=89.2
Q ss_pred CCCCceeeCCCCCeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEE-EeC
Q 023642 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASM 189 (279)
Q Consensus 114 ~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~ 189 (279)
......+..+...+....|+|||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+.|+. .+.
T Consensus 188 g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~la~~~~~ 263 (430)
T PRK00178 188 GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSKLAFVLSK 263 (430)
T ss_pred CCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCEEEEEEcc
Confidence 33445677888899999999999999876543 369999999885432 1223334567899999998874 444
Q ss_pred CC--eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-C--CeEEEEECCCCeEE
Q 023642 190 SP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-D--DCIYVYDLEANKLS 262 (279)
Q Consensus 190 d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-d--~~i~vwd~~~~~~~ 262 (279)
++ .|++||+.++....+.. +........|+|||+.|+..+. + ..|+++|+.+++..
T Consensus 264 ~g~~~Iy~~d~~~~~~~~lt~-----------------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~ 324 (430)
T PRK00178 264 DGNPEIYVMDLASRQLSRVTN-----------------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE 324 (430)
T ss_pred CCCceEEEEECCCCCeEEccc-----------------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 44 68888999887543321 1123456789999998876553 3 36888898877643
No 220
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.03 E-value=3.4e-08 Score=86.54 Aligned_cols=127 Identities=19% Similarity=0.241 Sum_probs=89.3
Q ss_pred CCCCceeeCCCCCeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEE-EeC
Q 023642 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASM 189 (279)
Q Consensus 114 ~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~ 189 (279)
......+..+...+...+|+|||++|+.+..+ ..|++||+.++..... ..+.+.+.+++|+|||+.|+. .+.
T Consensus 179 g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~----~~~~~~~~~~~~spDg~~l~~~~~~ 254 (417)
T TIGR02800 179 GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV----ASFPGMNGAPAFSPDGSKLAVSLSK 254 (417)
T ss_pred CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe----ecCCCCccceEECCCCCEEEEEECC
Confidence 34456677788889999999999999887654 4799999998854322 234455677999999998764 444
Q ss_pred C--CeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-CC--eEEEEECCCCeE
Q 023642 190 S--PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DD--CIYVYDLEANKL 261 (279)
Q Consensus 190 d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-d~--~i~vwd~~~~~~ 261 (279)
+ ..|++||+.++....+.. +........|+|||++|+..+. ++ .|+++|+.+++.
T Consensus 255 ~~~~~i~~~d~~~~~~~~l~~-----------------~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~ 314 (417)
T TIGR02800 255 DGNPDIYVMDLDGKQLTRLTN-----------------GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV 314 (417)
T ss_pred CCCccEEEEECCCCCEEECCC-----------------CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 3 368999998876543321 1113445689999998876553 33 688899887654
No 221
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.02 E-value=3e-09 Score=96.86 Aligned_cols=120 Identities=14% Similarity=0.066 Sum_probs=98.1
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecc
Q 023642 130 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV 209 (279)
Q Consensus 130 ~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 209 (279)
+.++++.-++++|+.-+.|.+|+........ ...+|++.|.++.|+-||+++++.|+|+++++|++.+.+......
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~- 214 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTG- 214 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcc---eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccc-
Confidence 3467788899999999999999987332222 357999999999999999999999999999999999987643111
Q ss_pred ccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCc
Q 023642 210 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTV 270 (279)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~ 270 (279)
=+|+..|+.++|.|+ .++|++.|.+.++|+.. +..+..+.+|..
T Consensus 215 --------------fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g 258 (967)
T KOG0974|consen 215 --------------FGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSG 258 (967)
T ss_pred --------------ccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhh
Confidence 148889999999998 89999999999999764 566667777754
No 222
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=3.5e-08 Score=87.09 Aligned_cols=159 Identities=17% Similarity=0.165 Sum_probs=101.4
Q ss_pred hhhhccccCccCCCCeeeccc-c---ceEeeee-ecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCC---CcEEEEEcC
Q 023642 83 VKMLAGREGNYSGRGRFSAAD-C---CHMLSRY-LPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVE 154 (279)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~d-~---~~~~~~~-~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d---~~i~iwd~~ 154 (279)
++.+.|....|.....|.... + ...+|-. ........+..+...+....|||||+.|+..+.+ ..|.+||+.
T Consensus 171 ~~~ltG~~g~f~~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~ 250 (448)
T PRK04792 171 YEKLTGERGAFLTRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIY 250 (448)
T ss_pred HHHhcCCCccccCEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECC
Confidence 345666666666666663221 1 1122222 1233345677788899999999999999876543 268899998
Q ss_pred CCeEEeeeeeccCCCcceEEEEECCCCCEEEE-EeCCC--eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEE
Q 023642 155 RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF 231 (279)
Q Consensus 155 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 231 (279)
+++.... ....+.....+|+|||+.|+. .+.++ .|+++|+.+++...+.. +.....
T Consensus 251 tg~~~~l----t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~-----------------~~~~~~ 309 (448)
T PRK04792 251 TQVREKV----TSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITR-----------------HRAIDT 309 (448)
T ss_pred CCCeEEe----cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECcc-----------------CCCCcc
Confidence 8754221 122233457899999998765 45555 48888998877543321 112456
Q ss_pred EEEEecCCCEEEEecC-C--CeEEEEECCCCeEE
Q 023642 232 SLKFSTDGRELVAGSS-D--DCIYVYDLEANKLS 262 (279)
Q Consensus 232 ~~~~sp~g~~l~t~s~-d--~~i~vwd~~~~~~~ 262 (279)
..+|+|||++|+..+. + ..|+++|+.+++..
T Consensus 310 ~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 310 EPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred ceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 6899999998876553 3 36888888877643
No 223
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=1.7e-08 Score=90.56 Aligned_cols=167 Identities=14% Similarity=0.147 Sum_probs=123.8
Q ss_pred CccCCCCee---eccccceEeeeeecC----CCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeee
Q 023642 91 GNYSGRGRF---SAADCCHMLSRYLPV----NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI 163 (279)
Q Consensus 91 ~~~~~~~~~---~~~d~~~~~~~~~~~----~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 163 (279)
..+++.+++ +..|+.+.+|+.... ....++.-|.+.|++++|++||.+|.+|+..+.+.+|.+.++++ ++
T Consensus 211 ~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k--qf- 287 (792)
T KOG1963|consen 211 VALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK--QF- 287 (792)
T ss_pred EEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc--cc-
Confidence 467888887 345788999987762 23456888999999999999999999999999999999999862 22
Q ss_pred eccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEE
Q 023642 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (279)
Q Consensus 164 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 243 (279)
+....++|..+.++||+.+.+....|..|.+....+-............ .+....+..+-.+.++++|.-+.++
T Consensus 288 -LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~-----~~~~k~~~~~l~t~~~idpr~~~~v 361 (792)
T KOG1963|consen 288 -LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPP-----TPSTKTRPQSLTTGVSIDPRTNSLV 361 (792)
T ss_pred -ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCC-----CccccccccccceeEEEcCCCCcee
Confidence 3455678999999999999999999999999877554432111110000 0000111234567888999777888
Q ss_pred EecCCCeEEEEECCCCeEEEEEe
Q 023642 244 AGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 244 t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
-.+..+.|.+||+-+.+.+..+.
T Consensus 362 ln~~~g~vQ~ydl~td~~i~~~~ 384 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTDSTIYKLQ 384 (792)
T ss_pred ecCCCceEEEEeccccceeeeEE
Confidence 88999999999998877666654
No 224
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.99 E-value=3.9e-09 Score=85.07 Aligned_cols=171 Identities=14% Similarity=0.157 Sum_probs=118.0
Q ss_pred CccCCCCeeec-ccc-ceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEE-EEeCCCcEEEEEcCCCeEEeeeeeccC
Q 023642 91 GNYSGRGRFSA-ADC-CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKS 167 (279)
Q Consensus 91 ~~~~~~~~~~~-~d~-~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~ 167 (279)
..|+++|++.+ ..+ .+.+-+..+.+ ...+...-+.|.-+.|..|..+++ ....|+.|.+|++...+-..++ ..
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tlq-~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI---de 89 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETLQ-LHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI---DE 89 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchhh-HHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe---cc
Confidence 35788888743 222 22222222222 122333457888899999887664 5578899999999987655442 34
Q ss_pred CCcceEEEEECCCCCEEE-EEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCC-----------------------
Q 023642 168 LRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD----------------------- 223 (279)
Q Consensus 168 ~~~~v~~~~~sp~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 223 (279)
...++.++.|||||+.|+ +...+-.|.+|.+.+.....+........++.|..++.
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 455799999999997755 56678899999999988877776666777888877776
Q ss_pred -------------------CC-----------------c-cccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEE
Q 023642 224 -------------------GG-----------------Y-SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI 265 (279)
Q Consensus 224 -------------------~~-----------------~-~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~ 265 (279)
+| + .-.+..++|+|.+++|+.|+.|+.++|.+--+-++...+
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF 248 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhh
Confidence 00 1 134567788998999999999988888776555554443
No 225
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=1.7e-08 Score=83.18 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=112.6
Q ss_pred ccCCCCee---eccccceEeeeeec-----CCCCceeeC--CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEee
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLP-----VNGPWPVDQ--TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK 161 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~-----~~~~~~l~~--h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~ 161 (279)
.|+.+++| ++.|....+|+... ..++..+.+ |.+.|.|++|.-..+++.+|..+++|.+.|+.+.+.+..
T Consensus 63 qFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V 142 (609)
T KOG4227|consen 63 QFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYV 142 (609)
T ss_pred eeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeee
Confidence 46777776 34566788898754 223444544 458999999999999999999999999999999876654
Q ss_pred eeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce-eeeeccccccceeEEeeCCCCCccccEEEEEEecCCC
Q 023642 162 DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240 (279)
Q Consensus 162 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 240 (279)
.. .....+.|..+..+|..+.|++.+.++.|.+||.+.... ... |.... .....+.+.|+|...
T Consensus 143 ~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~-----------~~~AN---~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 143 AN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL-----------VLPAN---SGKNFYTAEFHPETP 207 (609)
T ss_pred ec-ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce-----------eeecC---CCccceeeeecCCCc
Confidence 21 223345899999999999999999999999999987652 111 11100 223567889999754
Q ss_pred -EEEEecCCCeEEEEECCC
Q 023642 241 -ELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 241 -~l~t~s~d~~i~vwd~~~ 258 (279)
+|++.+..+-+-+||++.
T Consensus 208 ~Li~~~~~~~G~~~~D~R~ 226 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRM 226 (609)
T ss_pred eeEEeccccCCCCceeecc
Confidence 667888888899999975
No 226
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.99 E-value=1.8e-08 Score=86.13 Aligned_cols=149 Identities=17% Similarity=0.093 Sum_probs=101.5
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.+.|+.+.+|.-. +....++.....+|+|++|.|+.+.++.+.. +.+.|=.+..... .+.-+.|.+-|.++.|+|
T Consensus 122 ~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k---~i~WkAHDGiiL~~~W~~ 196 (737)
T KOG1524|consen 122 AGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAANSK---IIRWRAHDGLVLSLSWST 196 (737)
T ss_pred ecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeecccccc---eeEEeccCcEEEEeecCc
Confidence 4566666666421 2222346677899999999998877665543 4666655554322 233579999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCC------------CCccccEEEEEEecCCCEEEEecC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD------------GGYSFGIFSLKFSTDGRELVAGSS 247 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~v~~~~~sp~g~~l~t~s~ 247 (279)
....|++|+.|-..++||..+...-...........+.|.++.. +...+.|+.++||+||..++.|+.
T Consensus 197 ~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 197 QSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred cccceeecCCceeEEeecccCcccccCChhccceeeeeeccccceeeeeeeeeeecCCCccceEEEEEcCCCceeecccc
Confidence 99999999999999999987654422222222222333433322 335678999999999999998888
Q ss_pred CCeEEE
Q 023642 248 DDCIYV 253 (279)
Q Consensus 248 d~~i~v 253 (279)
.|.+.+
T Consensus 277 ~G~v~~ 282 (737)
T KOG1524|consen 277 TGQLIV 282 (737)
T ss_pred CceEEE
Confidence 776554
No 227
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=1e-08 Score=83.61 Aligned_cols=104 Identities=21% Similarity=0.137 Sum_probs=78.5
Q ss_pred CCCCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 023642 122 QTTSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~ 200 (279)
+| -+|++++|++||..+++++. |..|.|||.+++.++... ....+.++-+.|||||.+|+.+.-|+..++|+...
T Consensus 194 gh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~---~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q 269 (445)
T KOG2139|consen 194 GH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI---PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQ 269 (445)
T ss_pred CC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc---ccCCCceeeEEEcCCCCEEEEecccceeeeehhcc
Confidence 44 78999999999999998875 568999999999765532 12334688999999999999999999999995432
Q ss_pred -CceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec
Q 023642 201 -GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 201 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
-....... ..+.|...+|+|+|++|+..+
T Consensus 270 ~wt~erw~l-----------------gsgrvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 270 SWTKERWIL-----------------GSGRVQTACWSPCGSFLLFAC 299 (445)
T ss_pred cceecceec-----------------cCCceeeeeecCCCCEEEEEE
Confidence 22211110 223788999999999876544
No 228
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.96 E-value=1.6e-07 Score=80.57 Aligned_cols=145 Identities=16% Similarity=0.137 Sum_probs=91.9
Q ss_pred ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe-CCCeEEEE
Q 023642 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIV 196 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~ 196 (279)
..+......-..+.|+|||+++++++.|+.|.++|+.+.+.+..+.. .....+++++|||+++++++ ..+.+.++
T Consensus 30 ~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~----G~~~~~i~~s~DG~~~~v~n~~~~~v~v~ 105 (369)
T PF02239_consen 30 ARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV----GGNPRGIAVSPDGKYVYVANYEPGTVSVI 105 (369)
T ss_dssp EEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-----SSEEEEEEE--TTTEEEEEEEETTEEEEE
T ss_pred EEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec----CCCcceEEEcCCCCEEEEEecCCCceeEe
Confidence 34554444445678999999999999999999999999987766432 22478899999999988765 68999999
Q ss_pred ECCCCceeeeecccccc--------cee---------EEeeCCC---------CC---------ccccEEEEEEecCCCE
Q 023642 197 DVGSGTMESLANVTEIH--------DGL---------DFSAADD---------GG---------YSFGIFSLKFSTDGRE 241 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~--------~~~---------~~~~~~~---------~~---------~~~~v~~~~~sp~g~~ 241 (279)
|.++.+........... .++ .+.-... +. -........|+|++++
T Consensus 106 D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry 185 (369)
T PF02239_consen 106 DAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRY 185 (369)
T ss_dssp ETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSE
T ss_pred ccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccce
Confidence 99987764433221100 011 0110000 00 0123456789999998
Q ss_pred EEEe-cCCCeEEEEECCCCeEEEEEe
Q 023642 242 LVAG-SSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 242 l~t~-s~d~~i~vwd~~~~~~~~~~~ 266 (279)
++.+ ..+..|-++|.++++.+..+.
T Consensus 186 ~~va~~~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 186 FLVAANGSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred eeecccccceeEEEeeccceEEEEee
Confidence 7664 456799999999998887765
No 229
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=9e-08 Score=84.07 Aligned_cols=161 Identities=17% Similarity=0.187 Sum_probs=98.9
Q ss_pred ccCCCCee----eccccceEeeeeec-CCCCceeeCCCCCeEEEEECCCCCEEEEEeC-CCcEEEEEc--CCCeEEeeee
Q 023642 92 NYSGRGRF----SAADCCHMLSRYLP-VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ-ASQIRIYDV--ERGWKIQKDI 163 (279)
Q Consensus 92 ~~~~~~~~----~~~d~~~~~~~~~~-~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~-d~~i~iwd~--~~~~~~~~~~ 163 (279)
.++++|.. .+.++...+|.+.. ......+..+...+....|+|||++|+..+. ++...+|.+ .++... ..
T Consensus 246 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~l- 323 (427)
T PRK02889 246 AWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RV- 323 (427)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EE-
Confidence 45666642 23344444555432 2233445666666778899999998876654 456666654 444322 21
Q ss_pred eccCCCcceEEEEECCCCCEEEEEeCCC---eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCC
Q 023642 164 LAKSLRWTVTDTSLSPDQRHLVYASMSP---IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240 (279)
Q Consensus 164 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 240 (279)
...+ ......+|+|||++|+..+.++ .|.+||+.+++...+... .......|+|||+
T Consensus 324 t~~g--~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~------------------~~~~~p~~spdg~ 383 (427)
T PRK02889 324 TFTG--SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT------------------TRDESPSFAPNGR 383 (427)
T ss_pred ecCC--CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC------------------CCccCceECCCCC
Confidence 1222 2345678999999998777554 699999988875433210 1235679999999
Q ss_pred EEEEecCCC---eEEEEECCCCeEEEEEeCCCcceeEE
Q 023642 241 ELVAGSSDD---CIYVYDLEANKLSLRILAHTVNIALW 275 (279)
Q Consensus 241 ~l~t~s~d~---~i~vwd~~~~~~~~~~~~h~~~v~~v 275 (279)
+|+..+.++ .+++.++ +|.....+..+.+.+...
T Consensus 384 ~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p 420 (427)
T PRK02889 384 YILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREP 420 (427)
T ss_pred EEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCC
Confidence 988776443 4677777 466666676555554443
No 230
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.93 E-value=3.3e-09 Score=92.67 Aligned_cols=109 Identities=19% Similarity=0.180 Sum_probs=88.6
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceee
Q 023642 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~ 205 (279)
.|..++|-|||..|+.+.. .++.+||...|..+.. +.+|...|.+++|+.||+.+++|+.|+.|.+|...-.....
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqt---LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQP---LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK 89 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccc---cccccceEEEEEEccCCceeccCCCceeEEEecccccceee
Confidence 8999999999999887765 5899999999976664 68999999999999999999999999999999875433211
Q ss_pred eeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
. .|...|-|+.|+|-...|++++-.. .-+|...
T Consensus 90 Y------------------SH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~ 122 (1081)
T KOG1538|consen 90 Y------------------SHNDAIQCMSFNPITHQLASCSLSD-FGLWSPE 122 (1081)
T ss_pred e------------------ccCCeeeEeecCchHHHhhhcchhh-ccccChh
Confidence 1 1666899999999988898877533 4566543
No 231
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=1e-07 Score=83.87 Aligned_cols=146 Identities=11% Similarity=0.082 Sum_probs=92.7
Q ss_pred eEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeC-CCc--EEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCC
Q 023642 106 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ-ASQ--IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR 182 (279)
Q Consensus 106 ~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~-d~~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 182 (279)
+.+|++... ....+..+.......+|+|||++|+..+. ++. |.++|+.++..... ... .......+|+|||+
T Consensus 274 Iy~~d~~~g-~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l--t~~--g~~~~~~~~SpDG~ 348 (433)
T PRK04922 274 IYVMDLGSR-QLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL--TFQ--GNYNARASVSPDGK 348 (433)
T ss_pred EEEEECCCC-CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--ecC--CCCccCEEECCCCC
Confidence 444444322 22345556666678899999999887664 444 67777777643221 122 22355789999999
Q ss_pred EEEEEeCCC---eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC---CeEEEEEC
Q 023642 183 HLVYASMSP---IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDL 256 (279)
Q Consensus 183 ~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d---~~i~vwd~ 256 (279)
+|+..+.++ .|.+||+.+++...+... .......|+|||++++..+.+ ..|+++++
T Consensus 349 ~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~------------------~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 349 KIAMVHGSGGQYRIAVMDLSTGSVRTLTPG------------------SLDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred EEEEEECCCCceeEEEEECCCCCeEECCCC------------------CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 998765443 699999988775432210 123456899999988876643 36888998
Q ss_pred CCCeEEEEEeCCCcceeEE
Q 023642 257 EANKLSLRILAHTVNIALW 275 (279)
Q Consensus 257 ~~~~~~~~~~~h~~~v~~v 275 (279)
. +.....+..+.+.+..+
T Consensus 411 ~-g~~~~~l~~~~g~~~~p 428 (433)
T PRK04922 411 D-GRVRQRLVSADGEVREP 428 (433)
T ss_pred C-CCceEEcccCCCCCCCC
Confidence 5 45566666555555443
No 232
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.92 E-value=3.5e-09 Score=88.73 Aligned_cols=115 Identities=15% Similarity=0.157 Sum_probs=90.5
Q ss_pred eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 023642 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~ 198 (279)
.+..-.+.+..+.-+|-+..+-+|...|+|.+|.....+++.+ ...|.++|.++++.|+|+|+++.+.|..++|||+
T Consensus 246 ~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK---iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDl 322 (545)
T KOG1272|consen 246 SIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK---ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDL 322 (545)
T ss_pred HHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHH---HHhcCCCcceEEECCCCcEEeecccccceeEeee
Confidence 3555678889999999999999999999999999988877665 4589999999999999999999999999999999
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEE
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd 255 (279)
++-........ ......++||..| ++..+....|.||.
T Consensus 323 R~~~ql~t~~t-----------------p~~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 323 RNFYQLHTYRT-----------------PHPASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred ccccccceeec-----------------CCCcccccccccc--ceeeecCCeeeeeh
Confidence 98664221111 0256678887555 33445556688884
No 233
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=1.6e-08 Score=85.44 Aligned_cols=104 Identities=10% Similarity=0.151 Sum_probs=83.4
Q ss_pred eccccceEeeeeecCCCCce-eeCCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEE
Q 023642 100 SAADCCHMLSRYLPVNGPWP-VDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS 176 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~-l~~h~~~V~~~~~sp--d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 176 (279)
++.|..+++|++.......- ..+|...|....|-| +.+.+++.+.||++++=.+.....+.....+..|.++|..++
T Consensus 160 gSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhkla 239 (559)
T KOG1334|consen 160 GSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLA 239 (559)
T ss_pred cCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceee
Confidence 56788899999988776655 578999999999999 557899999999999988765444444455678999999999
Q ss_pred ECCCCCE-EEEEeCCCeEEEEECCCCce
Q 023642 177 LSPDQRH-LVYASMSPIVHIVDVGSGTM 203 (279)
Q Consensus 177 ~sp~~~~-l~~~~~d~~i~i~d~~~~~~ 203 (279)
.-|+..+ |.+++.|+.+.-+|++.+..
T Consensus 240 v~p~sp~~f~S~geD~~v~~~Dlr~~~p 267 (559)
T KOG1334|consen 240 VEPDSPKPFLSCGEDAVVFHIDLRQDVP 267 (559)
T ss_pred ecCCCCCcccccccccceeeeeeccCCc
Confidence 9997755 88999999888888875443
No 234
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.90 E-value=6e-07 Score=70.78 Aligned_cols=128 Identities=14% Similarity=-0.001 Sum_probs=95.0
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCC-eEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceee
Q 023642 127 AYVSQFSADGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (279)
Q Consensus 127 V~~~~~spd~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~ 205 (279)
+.+++++||++++++.+....|..|.++.. +.+.+ +........=.+..|+.....+|++..||++.|||++.-....
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeee-eEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence 889999999999999999999999999754 33333 2334444556788999999999999999999999999755322
Q ss_pred eeccccccceeEEeeCCCCCccccEEEEEEecCCC--EEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~--~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
... ......|.+.+..+.|+|-|. +|+..-.-+.+++.|++++.-.+.+.
T Consensus 240 ~~~-----------sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 240 AEI-----------SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred hhh-----------cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence 111 111123788999999998665 34444445689999999987666654
No 235
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=1.4e-07 Score=80.98 Aligned_cols=178 Identities=15% Similarity=0.211 Sum_probs=118.2
Q ss_pred cccCCccccccccCCCCCcccchhhhhccccCc---cCCCCeeeccccceEeee-----ee-------cC-CC-------
Q 023642 60 LKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGN---YSGRGRFSAADCCHMLSR-----YL-------PV-NG------- 116 (279)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~-----~~-------~~-~~------- 116 (279)
|+.+|....++++.+.....+..+++..-.+.. ......|.-.|.....|+ ++ +. ..
T Consensus 173 lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~ 252 (566)
T KOG2315|consen 173 LSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQT 252 (566)
T ss_pred ecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccce
Confidence 555666677777777666665555555444332 233445666777777776 11 00 00
Q ss_pred Cce--eeC--------CCCCeEEEEECCCCCEEEE--EeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEE
Q 023642 117 PWP--VDQ--------TTSRAYVSQFSADGSLFVA--GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184 (279)
Q Consensus 117 ~~~--l~~--------h~~~V~~~~~spd~~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 184 (279)
.+. +.+ -.++|.++.|+|+++.|+. |-.=.++-|||++.. .+.. -.+++-.++-|+|.|++|
T Consensus 253 Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~d-----f~egpRN~~~fnp~g~ii 326 (566)
T KOG2315|consen 253 LYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFD-----FPEGPRNTAFFNPHGNII 326 (566)
T ss_pred EEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEe-----CCCCCccceEECCCCCEE
Confidence 011 112 2799999999999988755 455568999998854 3332 223466788999999999
Q ss_pred EEEeC---CCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC------CCeEEEEE
Q 023642 185 VYASM---SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYD 255 (279)
Q Consensus 185 ~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~------d~~i~vwd 255 (279)
+.++- -|.+-+||+.+.+++..... ...+-+.|+|||++|+|+.. |+.++||+
T Consensus 327 ~lAGFGNL~G~mEvwDv~n~K~i~~~~a------------------~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 327 LLAGFGNLPGDMEVWDVPNRKLIAKFKA------------------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred EEeecCCCCCceEEEeccchhhcccccc------------------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 88774 47899999998665432221 14567899999999998763 67899999
Q ss_pred CCCCeEE
Q 023642 256 LEANKLS 262 (279)
Q Consensus 256 ~~~~~~~ 262 (279)
.. |..+
T Consensus 389 yt-G~~l 394 (566)
T KOG2315|consen 389 YT-GSLL 394 (566)
T ss_pred ec-Ccee
Confidence 85 5544
No 236
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.89 E-value=3.2e-08 Score=90.70 Aligned_cols=133 Identities=17% Similarity=0.212 Sum_probs=95.0
Q ss_pred CCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcc--eEEEEECCCCCE-EEEEeCCCeEEEEE
Q 023642 122 QTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWT--VTDTSLSPDQRH-LVYASMSPIVHIVD 197 (279)
Q Consensus 122 ~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--v~~~~~sp~~~~-l~~~~~d~~i~i~d 197 (279)
+-...|+++.-+. .|+.+++|..||.|++||.+....-..+...+.|... |..+.+.+.|-- |++|+.||.|++||
T Consensus 1206 ~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~D 1285 (1387)
T KOG1517|consen 1206 GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLD 1285 (1387)
T ss_pred CCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEe
Confidence 4456677776553 5799999999999999998765332222334677766 999999997755 99999999999999
Q ss_pred CCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
++........... .+-+ +.+..+++..++....+|+|+. +.|+||++. |+.+..+..
T Consensus 1286 lR~~~~e~~~~iv---------~~~~--yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~ 1342 (1387)
T KOG1517|consen 1286 LRMSSKETFLTIV---------AHWE--YGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKY 1342 (1387)
T ss_pred cccCcccccceee---------eccc--cCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhccccc
Confidence 9985332221111 0000 1125899999999999999998 999999986 555545443
No 237
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.88 E-value=2.7e-07 Score=80.90 Aligned_cols=135 Identities=19% Similarity=0.129 Sum_probs=89.6
Q ss_pred ceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEE-EeCCC--cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCC
Q 023642 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVA-GFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 181 (279)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s-~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 181 (279)
.+.+|++... ....+..+...+.+++|+|||+.|+. .+.++ .|.+||+.++.... ...+........|+|||
T Consensus 215 ~i~v~d~~~g-~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~----l~~~~~~~~~~~~s~dg 289 (417)
T TIGR02800 215 EIYVQDLATG-QREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR----LTNGPGIDTEPSWSPDG 289 (417)
T ss_pred EEEEEECCCC-CEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE----CCCCCCCCCCEEECCCC
Confidence 3444544322 22335556677788999999997764 44444 68899998774332 22333445577999999
Q ss_pred CEEEEEeCC-C--eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC---eEEEEE
Q 023642 182 RHLVYASMS-P--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD---CIYVYD 255 (279)
Q Consensus 182 ~~l~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~---~i~vwd 255 (279)
+.|+..+.. + .|+++|+.+++...+.. +...+....|+|+|++++..+.++ .|.+||
T Consensus 290 ~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~-----------------~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d 352 (417)
T TIGR02800 290 KSIAFTSDRGGSPQIYMMDADGGEVRRLTF-----------------RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMD 352 (417)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEEEeec-----------------CCCCccCeEECCCCCEEEEEEccCCceEEEEEe
Confidence 998776543 2 68888888766433221 112456788999999998877765 799999
Q ss_pred CCCCeE
Q 023642 256 LEANKL 261 (279)
Q Consensus 256 ~~~~~~ 261 (279)
+.++..
T Consensus 353 ~~~~~~ 358 (417)
T TIGR02800 353 LDGGGE 358 (417)
T ss_pred CCCCCe
Confidence 987643
No 238
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.87 E-value=3e-08 Score=88.00 Aligned_cols=123 Identities=15% Similarity=0.111 Sum_probs=92.3
Q ss_pred eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC-CCeEEeeeeeccCCCcceEEEEECCCC-CEEEEEeCCCeEEEE
Q 023642 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVE-RGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIV 196 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~ 196 (279)
....|.++|+++.++|=+..++..+.|-+++||.-. ...++. ....+...|++++|||.. ..++++..||.+.+|
T Consensus 393 ~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~---~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iW 469 (555)
T KOG1587|consen 393 TFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLL---SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIW 469 (555)
T ss_pred cccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcch---hhhhccceeeeeEEcCcCceEEEEEcCCCceehh
Confidence 456789999999999976665555559999999877 332222 234556679999999965 457788889999999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
|+......+...... +....+.+.|+++|+.|+.|...|++++|++..
T Consensus 470 DLl~~~~~Pv~s~~~--------------~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 470 DLLQDDEEPVLSQKV--------------CSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred hhhccccCCcccccc--------------cccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 998766543332211 123667788899999999999999999999964
No 239
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.86 E-value=2.4e-07 Score=81.26 Aligned_cols=121 Identities=19% Similarity=0.248 Sum_probs=80.2
Q ss_pred CCeEEEEECCCCCEEEEEe-CCCcEEEE--EcCC-CeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC---CeEEEEE
Q 023642 125 SRAYVSQFSADGSLFVAGF-QASQIRIY--DVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVD 197 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~-~d~~i~iw--d~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~i~d 197 (279)
......+|+|||+.|+..+ .++...+| ++.. +..... +..+...+....|+|||+.|+..+.+ ..|.+||
T Consensus 281 ~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~---lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~d 357 (428)
T PRK01029 281 GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL---LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYD 357 (428)
T ss_pred CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE---eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEE
Confidence 4456789999999887665 46655555 4432 222222 22333457788999999998876643 4799999
Q ss_pred CCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC---CCeEEEEECCCCeEEEEE
Q 023642 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRI 265 (279)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~---d~~i~vwd~~~~~~~~~~ 265 (279)
+.+++...+... ...+....|+|||+.|+..+. ...|++||+.+++.....
T Consensus 358 l~~g~~~~Lt~~-----------------~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 358 LATGRDYQLTTS-----------------PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred CCCCCeEEccCC-----------------CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 998886543321 114566899999998875432 357999999887654444
No 240
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.85 E-value=1.9e-08 Score=82.96 Aligned_cols=119 Identities=14% Similarity=0.161 Sum_probs=83.9
Q ss_pred EEEEECCCCCEEEEE---eCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCcee
Q 023642 128 YVSQFSADGSLFVAG---FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (279)
Q Consensus 128 ~~~~~spd~~~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~ 204 (279)
+++.|..+......+ +....+.+|....+.+. ...+|-..+.+++|+||+++|+++..|..|++-........
T Consensus 111 ~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~I 186 (390)
T KOG3914|consen 111 TAISFIREDTSVLVADKAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVI 186 (390)
T ss_pred ceeeeeeccceEEEEeecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccch
Confidence 334444444444333 44455666665554332 24689899999999999999999999999999776654332
Q ss_pred eeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
.. |. -||..-|..++.-++ ..|+++|.|++|++||+++|+++.++.
T Consensus 187 es-----------fc----lGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 187 ES-----------FC----LGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred hh-----------hc----cccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcccccc
Confidence 11 11 136668999998755 568999999999999999999987664
No 241
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.85 E-value=1.5e-07 Score=80.71 Aligned_cols=112 Identities=19% Similarity=0.175 Sum_probs=79.6
Q ss_pred CEE-EEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccce
Q 023642 137 SLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (279)
Q Consensus 137 ~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 215 (279)
+++ ++-..+++|.+.|..+.+.+..+.. .......+.|+|||+++++++.|+.|.++|+.+.+........
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~---~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G----- 77 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPT---GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG----- 77 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE----STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-----
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcC---CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-----
Confidence 344 4556789999999999877766432 1223345789999999999999999999999999875443321
Q ss_pred eEEeeCCCCCccccEEEEEEecCCCEEEEec-CCCeEEEEECCCCeEEEEEeCC
Q 023642 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 216 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s-~d~~i~vwd~~~~~~~~~~~~h 268 (279)
....++++|+||++++++. .++.+.++|.++.+++++++..
T Consensus 78 ------------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 78 ------------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp ------------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--
T ss_pred ------------CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccc
Confidence 1567899999999998776 5889999999999999988754
No 242
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.83 E-value=1.3e-07 Score=86.90 Aligned_cols=144 Identities=19% Similarity=0.176 Sum_probs=100.8
Q ss_pred eccccceEeeeeecCC--CCcee------eCC----CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccC
Q 023642 100 SAADCCHMLSRYLPVN--GPWPV------DQT----TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS 167 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~--~~~~l------~~h----~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 167 (279)
.+.|+.+.+|+..... .+..+ .++ .+.=.-++|.....+|++++.-..|+|||.....++..+. .+
T Consensus 1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP--~~ 1206 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIP--YG 1206 (1387)
T ss_pred eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecc--cC
Confidence 5678888999877653 33322 121 2222556788876677766667899999999887666532 23
Q ss_pred CCcceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCcccc--EEEEEEecCCC-EEE
Q 023642 168 LRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFG--IFSLKFSTDGR-ELV 243 (279)
Q Consensus 168 ~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~sp~g~-~l~ 243 (279)
....|+++.-+- .|+.|+.|..||.+++||.+.......... +.. |+.. |..+.+-+.|- .|+
T Consensus 1207 s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~--------~R~-----h~~~~~Iv~~slq~~G~~elv 1273 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV--------YRE-----HNDVEPIVHLSLQRQGLGELV 1273 (1387)
T ss_pred CCccceeecccccCCceEEEeecCCceEEeecccCCcccccee--------ecc-----cCCcccceeEEeecCCCccee
Confidence 444577776543 479999999999999999997665333222 222 3335 89999988665 499
Q ss_pred EecCCCeEEEEECCC
Q 023642 244 AGSSDDCIYVYDLEA 258 (279)
Q Consensus 244 t~s~d~~i~vwd~~~ 258 (279)
+|+.||.|++||++.
T Consensus 1274 Sgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1274 SGSQDGDIQLLDLRM 1288 (1387)
T ss_pred eeccCCeEEEEeccc
Confidence 999999999999987
No 243
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.80 E-value=1.8e-08 Score=56.76 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=33.3
Q ss_pred ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 023642 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYD 152 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd 152 (279)
..+.+|.+.|++++|+|++.+|++++.|+.|++||
T Consensus 5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45889999999999999999999999999999997
No 244
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.79 E-value=1.5e-06 Score=73.70 Aligned_cols=128 Identities=16% Similarity=0.159 Sum_probs=104.3
Q ss_pred CceeeCCCCCeEEEEECCCCCEEEEEeCCC-cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 023642 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQAS-QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (279)
Q Consensus 117 ~~~l~~h~~~V~~~~~spd~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (279)
..+.-+|.+.|.-..+.-++.-++.|..|| .+-|+|.++++.... ...-+.|.+++.+|+|++++.+.....+.+
T Consensus 352 ~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~----e~~lg~I~av~vs~dGK~~vvaNdr~el~v 427 (668)
T COG4946 352 YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI----EKDLGNIEAVKVSPDGKKVVVANDRFELWV 427 (668)
T ss_pred eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe----eCCccceEEEEEcCCCcEEEEEcCceEEEE
Confidence 334567888899999999999999999999 999999999864432 344457999999999999999999999999
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC----eEEEEECCCCeEEEE
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD----CIYVYDLEANKLSLR 264 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~----~i~vwd~~~~~~~~~ 264 (279)
.|+.++....+-+. -.+-|+.+.|+|+++++|-+--++ .|+++|+.+++....
T Consensus 428 ididngnv~~idkS----------------~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v 484 (668)
T COG4946 428 IDIDNGNVRLIDKS----------------EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV 484 (668)
T ss_pred EEecCCCeeEeccc----------------ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence 99999997544332 223799999999999999876555 699999998775543
No 245
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=3.9e-07 Score=75.15 Aligned_cols=137 Identities=16% Similarity=0.157 Sum_probs=101.1
Q ss_pred CCeEEEEECCCC-CEEEEEeCC--CcEEEEEcCCCeEEeeeeecc------CCCcceEEEEECCC--CCEEEEEeCCCeE
Q 023642 125 SRAYVSQFSADG-SLFVAGFQA--SQIRIYDVERGWKIQKDILAK------SLRWTVTDTSLSPD--QRHLVYASMSPIV 193 (279)
Q Consensus 125 ~~V~~~~~spd~-~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~------~~~~~v~~~~~sp~--~~~l~~~~~d~~i 193 (279)
..+..+.-+|.. ..+++|+.. ..+.+||+.+.+.+....... ...-.++++.|-|. ...|+++..-+.+
T Consensus 149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqv 228 (412)
T KOG3881|consen 149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQV 228 (412)
T ss_pred CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeE
Confidence 556666666644 455679988 899999999875544321111 11224678889887 7889999999999
Q ss_pred EEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEE-EeCCCcce
Q 023642 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-ILAHTVNI 272 (279)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~-~~~h~~~v 272 (279)
++||.+.++.. +..+. |. ...++++...|+|+++++|..-+.+..||+++++.+.. +.|-.+.|
T Consensus 229 R~YDt~~qRRP-V~~fd-------~~-------E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsi 293 (412)
T KOG3881|consen 229 RLYDTRHQRRP-VAQFD-------FL-------ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSI 293 (412)
T ss_pred EEecCcccCcc-eeEec-------cc-------cCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCc
Confidence 99999976642 22221 11 12899999999999999999999999999999988766 77877777
Q ss_pred eEEE
Q 023642 273 ALWI 276 (279)
Q Consensus 273 ~~v~ 276 (279)
+++.
T Consensus 294 rsih 297 (412)
T KOG3881|consen 294 RSIH 297 (412)
T ss_pred ceEE
Confidence 7764
No 246
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.78 E-value=2.2e-08 Score=84.55 Aligned_cols=132 Identities=14% Similarity=0.170 Sum_probs=104.3
Q ss_pred CceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCC--CCEEEEEeCCCeEE
Q 023642 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVH 194 (279)
Q Consensus 117 ~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~i~ 194 (279)
...|..|.+.|+.+.|+..|..|++|+.|.+|.+||...+.....+ ..+|...|....|-|. .+.|++++.||.++
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f--~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF--ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc--ccccccchhhhhccCCCCCcCceeccccCcee
Confidence 3458899999999999999999999999999999999988665543 3688888999999994 46799999999999
Q ss_pred EEECCCC-ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCC-EEEEecCCCeEEEEECCCCeEEEE
Q 023642 195 IVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLR 264 (279)
Q Consensus 195 i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~t~s~d~~i~vwd~~~~~~~~~ 264 (279)
+=.+... .+...... ..|.+.|..++.-|+.. .|.+++.|+.+.-+|++++.+...
T Consensus 213 ~s~i~~t~~~e~t~rl--------------~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~ 270 (559)
T KOG1334|consen 213 VSEILETGYVENTKRL--------------APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK 270 (559)
T ss_pred eeeeccccceecceec--------------ccccCccceeeecCCCCCcccccccccceeeeeeccCCccce
Confidence 8766543 32211111 12777999999999855 477999999999999988654433
No 247
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.78 E-value=8.7e-07 Score=77.74 Aligned_cols=128 Identities=20% Similarity=0.166 Sum_probs=77.1
Q ss_pred CceeeCCCCCeEEEEECCCCCEEEEEeC-----CCcEEEEEcCCCe--EEeeeeeccCCCcceEEEEECCCCCEEEEEe-
Q 023642 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQ-----ASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPDQRHLVYAS- 188 (279)
Q Consensus 117 ~~~l~~h~~~V~~~~~spd~~~l~s~~~-----d~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~- 188 (279)
...+....+.....+|||||+.|+..+. +..+.+|++..+. ..... ...........+|+|||+.|+..+
T Consensus 223 ~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l--t~~~~~~~~~p~wSPDG~~Laf~s~ 300 (428)
T PRK01029 223 GKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRL--LNEAFGTQGNPSFSPDGTRLVFVSN 300 (428)
T ss_pred ceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEe--ecCCCCCcCCeEECCCCCEEEEEEC
Confidence 3445555666778899999998876543 2234447776531 11121 112223346789999999887665
Q ss_pred CCCeEEEE--ECCC--CceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC---CeEEEEECCCCeE
Q 023642 189 MSPIVHIV--DVGS--GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKL 261 (279)
Q Consensus 189 ~d~~i~i~--d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d---~~i~vwd~~~~~~ 261 (279)
.++...+| ++.. +....+.. +...+....|||||++|+..+.+ ..|++||+.+++.
T Consensus 301 ~~g~~~ly~~~~~~~g~~~~~lt~-----------------~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~ 363 (428)
T PRK01029 301 KDGRPRIYIMQIDPEGQSPRLLTK-----------------KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD 363 (428)
T ss_pred CCCCceEEEEECcccccceEEecc-----------------CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe
Confidence 45644444 4432 21111110 11245678999999998876543 3799999998876
Q ss_pred EE
Q 023642 262 SL 263 (279)
Q Consensus 262 ~~ 263 (279)
..
T Consensus 364 ~~ 365 (428)
T PRK01029 364 YQ 365 (428)
T ss_pred EE
Confidence 43
No 248
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=3.5e-08 Score=80.12 Aligned_cols=131 Identities=15% Similarity=0.234 Sum_probs=98.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-----eEEeeeeeccCCCcceEEEEECC-CCCEEEEEeCCCeEEEE
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-----WKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIV 196 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~ 196 (279)
-.+.|.++.|...++++..|...|.|..+|++.+ ++... --|.+.|+++..-. ++++|.+.+.+|+|++|
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r----lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLy 326 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR----LYHDSSVTSLQILQFSQQKLMASDMTGKIKLY 326 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE----EEcCcchhhhhhhccccceEeeccCcCceeEe
Confidence 4678899999999999999999999999999864 34333 24667888888766 78899999999999999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCC
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h 268 (279)
|++.-++..-.. .+.+|.+ ...-.-+...+....+++++.|...+||.++.|..+.+++-.
T Consensus 327 D~R~~K~~~~V~--------qYeGHvN---~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 327 DLRATKCKKSVM--------QYEGHVN---LSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred eehhhhccccee--------eeecccc---cccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 999766532111 3444332 111222334566778888999999999999999999988743
No 249
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.76 E-value=1.1e-06 Score=77.44 Aligned_cols=121 Identities=19% Similarity=0.185 Sum_probs=81.2
Q ss_pred eeCCCCCeEEEEECCCCCEEEE-EeCCC--cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC-C--CeE
Q 023642 120 VDQTTSRAYVSQFSADGSLFVA-GFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-S--PIV 193 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s-~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d--~~i 193 (279)
+....+.+...+|+|||+.|+. ...++ .|.+||+.++.... +..+........|+|||+.|+..+. + ..|
T Consensus 238 l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~----lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~i 313 (430)
T PRK00178 238 ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR----VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQI 313 (430)
T ss_pred ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE----cccCCCCcCCeEECCCCCEEEEEECCCCCceE
Confidence 4444455667899999998874 44454 68888998875432 2334445667899999998876653 3 368
Q ss_pred EEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC-C--eEEEEECCCCeE
Q 023642 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-D--CIYVYDLEANKL 261 (279)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d-~--~i~vwd~~~~~~ 261 (279)
+++|+.+++...+.. .+ .......|+|||++|+..+.+ + .|.+||+.+++.
T Consensus 314 y~~d~~~g~~~~lt~----------~~-------~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 314 YKVNVNGGRAERVTF----------VG-------NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred EEEECCCCCEEEeec----------CC-------CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE
Confidence 888888777543321 00 022356899999998876543 2 588999988764
No 250
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.74 E-value=4.8e-07 Score=72.11 Aligned_cols=123 Identities=15% Similarity=0.105 Sum_probs=91.0
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceee
Q 023642 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMES 205 (279)
Q Consensus 127 V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~ 205 (279)
..++.|++.+..++++-.+|.+.+-+...+ .+.+....+.|+-..+-+.|+- +.+.+.+|+.|+.+..||++-... .
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~-~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-~ 201 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEM-VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-F 201 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEeccee-eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-e
Confidence 456789999999999999999986554444 2333334578888899999976 446889999999999999993321 1
Q ss_pred eeccccccceeEEeeCCCCCccccEEEEEEec-CCCEEEEecCCCeEEEEECCC-CeEEEE
Q 023642 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEA-NKLSLR 264 (279)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~t~s~d~~i~vwd~~~-~~~~~~ 264 (279)
+.. ..+.|...|.++.-+| .+.+++||+.|..|++||.+. ++++..
T Consensus 202 i~~-------------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~ 249 (339)
T KOG0280|consen 202 IWH-------------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK 249 (339)
T ss_pred eee-------------cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc
Confidence 111 1112777898988876 478999999999999999984 565543
No 251
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.73 E-value=1.5e-06 Score=76.81 Aligned_cols=121 Identities=22% Similarity=0.275 Sum_probs=79.6
Q ss_pred eeCCCCCeEEEEECCCCCEEEE-EeCCCc--EEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC-C--CeE
Q 023642 120 VDQTTSRAYVSQFSADGSLFVA-GFQASQ--IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-S--PIV 193 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s-~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d--~~i 193 (279)
+..........+|+|||+.|+. .+.++. |.+||+.+++... ...+.......+|+|||+.|+..+. + ..|
T Consensus 257 lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~----lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~I 332 (448)
T PRK04792 257 VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR----ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQI 332 (448)
T ss_pred ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE----CccCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 4333444567899999998865 556664 7778888775432 2334445677899999998876653 3 357
Q ss_pred EEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-CC--eEEEEECCCCeE
Q 023642 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DD--CIYVYDLEANKL 261 (279)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-d~--~i~vwd~~~~~~ 261 (279)
+++|+.+++...+.. .+ ......+|+|||++|+..+. ++ .|.++|+.+++.
T Consensus 333 y~~dl~~g~~~~Lt~----------~g-------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 333 YRVNLASGKVSRLTF----------EG-------EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM 386 (448)
T ss_pred EEEECCCCCEEEEec----------CC-------CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe
Confidence 777888776543321 00 02345689999999887654 33 577788887764
No 252
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.72 E-value=4.8e-08 Score=79.32 Aligned_cols=142 Identities=18% Similarity=0.182 Sum_probs=96.6
Q ss_pred eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCC-----CcceEEEEECCC-CCEEEEEeCCCeEE
Q 023642 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL-----RWTVTDTSLSPD-QRHLVYASMSPIVH 194 (279)
Q Consensus 121 ~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~~~~sp~-~~~l~~~~~d~~i~ 194 (279)
.+|+-.|+++.++.|...++++. |-+|.+|.++-...--.+.....+ ..-|++..|+|. .+.++..+..|+|+
T Consensus 161 NaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred ccceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 57999999999999999998775 689999998743211121222222 235889999995 56788899999999
Q ss_pred EEECCCCceeeee-ccccc----cceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEEC-CCCeEEEEEeCC
Q 023642 195 IVDVGSGTMESLA-NVTEI----HDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL-EANKLSLRILAH 268 (279)
Q Consensus 195 i~d~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~-~~~~~~~~~~~h 268 (279)
+.|++........ +.... ...-.|+. --..|..+.|+++|+++++-.. -+|++||+ ...+++.+++.|
T Consensus 240 LcDmR~~aLCd~hsKlfEepedp~~rsffse-----iIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh 313 (433)
T KOG1354|consen 240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSE-----IISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH 313 (433)
T ss_pred EeechhhhhhcchhhhhccccCCcchhhHHH-----HhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeeh
Confidence 9999854331111 11000 00001111 1136889999999999987543 58999999 567888888877
Q ss_pred C
Q 023642 269 T 269 (279)
Q Consensus 269 ~ 269 (279)
.
T Consensus 314 ~ 314 (433)
T KOG1354|consen 314 E 314 (433)
T ss_pred H
Confidence 5
No 253
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.69 E-value=6.2e-08 Score=79.99 Aligned_cols=86 Identities=17% Similarity=0.176 Sum_probs=72.8
Q ss_pred CCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 023642 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (279)
Q Consensus 116 ~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (279)
....+.||-+.++.++|+||+++++++..|.+|++-.....-.+.. .+.+|+..|..+++-++ +.|++++.|+++++
T Consensus 143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ies--fclGH~eFVS~isl~~~-~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIES--FCLGHKEFVSTISLTDN-YLLLSGSGDKTLRL 219 (390)
T ss_pred CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhh--hccccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence 3455789999999999999999999999999999988776544433 24689999999999765 45899999999999
Q ss_pred EECCCCcee
Q 023642 196 VDVGSGTME 204 (279)
Q Consensus 196 ~d~~~~~~~ 204 (279)
||+++|+..
T Consensus 220 Wd~~sgk~L 228 (390)
T KOG3914|consen 220 WDITSGKLL 228 (390)
T ss_pred EecccCCcc
Confidence 999999874
No 254
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.68 E-value=1.6e-07 Score=76.36 Aligned_cols=83 Identities=10% Similarity=0.118 Sum_probs=70.9
Q ss_pred eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 023642 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~ 198 (279)
.+.+|.+.+.+++|.|....|.+|..|..+.+||+...+-.. ....+|...|..+...+--+.+++++.||.|-+||.
T Consensus 192 ~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~--~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 192 TFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA--YELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred EEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee--eeeccchhhhhhhhhhhhheeeeeccCCCeEEEEec
Confidence 478999999999999999999999999999999997543322 345688888999998888899999999999999998
Q ss_pred CCCce
Q 023642 199 GSGTM 203 (279)
Q Consensus 199 ~~~~~ 203 (279)
.....
T Consensus 270 n~~r~ 274 (404)
T KOG1409|consen 270 NVKRV 274 (404)
T ss_pred cceee
Confidence 76544
No 255
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.66 E-value=1.9e-07 Score=73.22 Aligned_cols=96 Identities=13% Similarity=0.104 Sum_probs=71.6
Q ss_pred cceEeeeeecCCCCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC-CC
Q 023642 104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQ 181 (279)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~ 181 (279)
+....|.+.|......-..-.+.|.+++-+| +...++.|+.||.+-+||.+...... ..+..|+.+++.+-|+| ++
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~--S~l~ahk~~i~eV~FHpk~p 236 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPV--SLLKAHKAEIWEVHFHPKNP 236 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchH--HHHHHhhhhhhheeccCCCc
Confidence 3445565555443322222334499999999 55677889999999999998774332 24578999999999999 66
Q ss_pred CEEEEEeCCCeEEEEECCCC
Q 023642 182 RHLVYASMSPIVHIVDVGSG 201 (279)
Q Consensus 182 ~~l~~~~~d~~i~i~d~~~~ 201 (279)
..|++++.||.+..||..+.
T Consensus 237 ~~Lft~sedGslw~wdas~~ 256 (319)
T KOG4714|consen 237 EHLFTCSEDGSLWHWDASTT 256 (319)
T ss_pred hheeEecCCCcEEEEcCCCc
Confidence 78999999999999998863
No 256
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.65 E-value=1.1e-07 Score=53.44 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=32.0
Q ss_pred eccCCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 023642 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (279)
Q Consensus 164 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d 197 (279)
.+.+|...|.+++|+|++.+|++++.|+.|++||
T Consensus 6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3579999999999999999999999999999997
No 257
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.65 E-value=5.1e-07 Score=71.98 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=66.9
Q ss_pred CCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCC-eEEeeeeeccCCCcceEEEEECC-CCCEEEEEeCCCe
Q 023642 116 GPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPI 192 (279)
Q Consensus 116 ~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~ 192 (279)
..+..+.|.-+.....|+. +.+++.+|+.|+.+..||++.. +.+.. ..+-|...|.++.-+| .+.+|++|+.|-.
T Consensus 157 ~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~--n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~ 234 (339)
T KOG0280|consen 157 KVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH--NSKVHTSGVVSIYSSPPKPTYIATGSYDEC 234 (339)
T ss_pred ecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee--cceeeecceEEEecCCCCCceEEEeccccc
Confidence 3345788999999999986 5678899999999999999833 33222 2356777899999887 5778999999999
Q ss_pred EEEEECCC
Q 023642 193 VHIVDVGS 200 (279)
Q Consensus 193 i~i~d~~~ 200 (279)
|++||.++
T Consensus 235 i~~~DtRn 242 (339)
T KOG0280|consen 235 IRVLDTRN 242 (339)
T ss_pred eeeeehhc
Confidence 99999995
No 258
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.62 E-value=1.5e-07 Score=90.59 Aligned_cols=146 Identities=11% Similarity=0.136 Sum_probs=107.5
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECC
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~ 199 (279)
+..+-..|.++.=+|...+.++|+.||.|++|....++.+...... + ...|+.+.|+-+|+-+..+..||.+.+|...
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g-~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-G-NSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-C-cchhhhhhhcccCCceeeeccCCceeecccC
Confidence 4555677888888898899999999999999999888766543332 2 2689999999999999999999999999886
Q ss_pred CCceeeeeccccccceeEEeeCCC---------------------------CCccccEEEEEEecCCCEEEEecCCCeEE
Q 023642 200 SGTMESLANVTEIHDGLDFSAADD---------------------------GGYSFGIFSLKFSTDGRELVAGSSDDCIY 252 (279)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~ 252 (279)
........-.......+.|-+..- ..|.+.++++++-|..+.|++|+.+|.|+
T Consensus 2282 pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEE
Confidence 322111111111111112221100 45888999999999999999999999999
Q ss_pred EEECCCCeEEEEEeC
Q 023642 253 VYDLEANKLSLRILA 267 (279)
Q Consensus 253 vwd~~~~~~~~~~~~ 267 (279)
+||++..+.+++++.
T Consensus 2362 l~D~rqrql~h~~~~ 2376 (2439)
T KOG1064|consen 2362 LFDIRQRQLRHTFQA 2376 (2439)
T ss_pred EeehHHHHHHHHhhh
Confidence 999998877766653
No 259
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.62 E-value=3.6e-06 Score=67.10 Aligned_cols=143 Identities=14% Similarity=0.131 Sum_probs=90.2
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEe-------------------------------eee-----------
Q 023642 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ-------------------------------KDI----------- 163 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~-------------------------------~~~----------- 163 (279)
.-.-++||||+.+||.+...|+|+++|+....... ...
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 34668999999999999999999999987421100 000
Q ss_pred -e---------------c-cCCCcceEEEEECCCCCEEEEEeC----CC-------eEEEEECCCCceeeee--cccccc
Q 023642 164 -L---------------A-KSLRWTVTDTSLSPDQRHLVYASM----SP-------IVHIVDVGSGTMESLA--NVTEIH 213 (279)
Q Consensus 164 -~---------------~-~~~~~~v~~~~~sp~~~~l~~~~~----d~-------~i~i~d~~~~~~~~~~--~~~~~~ 213 (279)
. + ..+...|.++.++|.-++|+.|+. ++ =+.-|.+-++..-... ......
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~ 204 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDI 204 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccc
Confidence 0 0 012336888889998888776652 11 1556666554432111 100000
Q ss_pred c------------ee-EEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCc
Q 023642 214 D------------GL-DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTV 270 (279)
Q Consensus 214 ~------------~~-~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~ 270 (279)
. .. .|+... .....|..|..||||+.||+...+|.|.+|++.+-+....+..+.+
T Consensus 205 ~~~~~~~~~~~~~~~~~fs~~~--~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq 272 (282)
T PF15492_consen 205 TASSKRRGLLRIPSFKFFSRQG--QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ 272 (282)
T ss_pred cccccccceeeccceeeeeccc--cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence 0 00 111111 1235799999999999999999999999999998877777765443
No 260
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.58 E-value=2.2e-06 Score=74.20 Aligned_cols=134 Identities=16% Similarity=0.107 Sum_probs=101.2
Q ss_pred cceEeeeeecCCCCcee--eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCC
Q 023642 104 CCHMLSRYLPVNGPWPV--DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 181 (279)
Q Consensus 104 ~~~~~~~~~~~~~~~~l--~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 181 (279)
+.+..+.....+-.+.+ ..|.+.|.++.++.+-..|.+++.|+++..|+...+..... .......+.+++.+|||
T Consensus 80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~---~~~~~~~~~sl~is~D~ 156 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRI---WKEQKPLVSSLCISPDG 156 (541)
T ss_pred ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeee---eccCCCccceEEEcCCC
Confidence 33444444444433444 46999999999999999999999999999999998865544 34455578999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC-----CCEEEEec-CCCeEEEEE
Q 023642 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-----GRELVAGS-SDDCIYVYD 255 (279)
Q Consensus 182 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----g~~l~t~s-~d~~i~vwd 255 (279)
..+++++ ++|++||+++++.... |. ||.+.|.+++|..+ |.+++++. .+.-+.+|-
T Consensus 157 ~~l~~as--~~ik~~~~~~kevv~~-----------ft-----gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 157 KILLTAS--RQIKVLDIETKEVVIT-----------FT-----GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred CEEEecc--ceEEEEEccCceEEEE-----------ec-----CCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence 9999887 6899999999987532 33 36779999999877 77776543 455678886
Q ss_pred CCC
Q 023642 256 LEA 258 (279)
Q Consensus 256 ~~~ 258 (279)
++.
T Consensus 219 v~~ 221 (541)
T KOG4547|consen 219 VEK 221 (541)
T ss_pred EEc
Confidence 653
No 261
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=1.1e-06 Score=75.97 Aligned_cols=139 Identities=17% Similarity=0.234 Sum_probs=95.0
Q ss_pred EEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeee
Q 023642 128 YVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL 206 (279)
Q Consensus 128 ~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~ 206 (279)
..++++. ...+++.| ....|.-++++.|..+..+ ....+.++++..+|-..+|++|+.+|.|-.||.+.......
T Consensus 137 RDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~---~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~ 212 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPF---ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGT 212 (703)
T ss_pred ccccccCCCccEEEee-cCcceEEEEcccccccccc---ccccccceeeeecCccceEEecccCceEEEecchhhhhhee
Confidence 4455553 44444444 4457888899999776643 33346799999999999999999999999999998765433
Q ss_pred eccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe-CCCcceeEE
Q 023642 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTVNIALW 275 (279)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~-~h~~~v~~v 275 (279)
........ .+........|++++|+.+|-.+++|..+|.|.|||+++.+++..-. +..-+|..+
T Consensus 213 l~~~~~v~-----s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l 277 (703)
T KOG2321|consen 213 LDAASSVN-----SHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKL 277 (703)
T ss_pred eecccccC-----CCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeee
Confidence 32221111 01011123359999999999999999999999999999988765433 233344443
No 262
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.57 E-value=1.1e-06 Score=76.59 Aligned_cols=111 Identities=16% Similarity=0.177 Sum_probs=80.3
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 023642 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~ 201 (279)
.....|.+++++|+...|+.|+.||.|.+||..++..... ...-.++.++|||+|..+++|+..|.+.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-----ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-----KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-----eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 5678999999999999999999999999999987743322 22335788999999999999999999999998755
Q ss_pred ceeeeecccc--ccceeEEeeCCCCCccccEEEEEEecCC
Q 023642 202 TMESLANVTE--IHDGLDFSAADDGGYSFGIFSLKFSTDG 239 (279)
Q Consensus 202 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~sp~g 239 (279)
.........+ ....+.++.+-. +...+..+.|++..
T Consensus 332 pi~~qLlsEd~~P~~~L~Ls~yf~--~~~~L~~iqW~~~~ 369 (545)
T PF11768_consen 332 PIKMQLLSEDATPKSTLQLSKYFR--VSSSLVHIQWAPAP 369 (545)
T ss_pred ccceeeccccCCCccEEeeehhcc--CcchhheeEeccCC
Confidence 4422211111 122334444433 45567788888543
No 263
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.54 E-value=2e-05 Score=68.96 Aligned_cols=126 Identities=14% Similarity=0.114 Sum_probs=82.5
Q ss_pred CCceeeCCCCCeEEEEECCCCCE-EEEEeC---CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe---
Q 023642 116 GPWPVDQTTSRAYVSQFSADGSL-FVAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS--- 188 (279)
Q Consensus 116 ~~~~l~~h~~~V~~~~~spd~~~-l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--- 188 (279)
.+..+.... ......|+|||+. ++..+. +..|.++|+.+++.... ....+......|+|||+.|+...
T Consensus 180 ~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l----t~~~g~~~~~~~SPDG~~la~~~~~~ 254 (419)
T PRK04043 180 YQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI----ASSQGMLVVSDVSKDGSKLLLTMAPK 254 (419)
T ss_pred ceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE----ecCCCcEEeeEECCCCCEEEEEEccC
Confidence 344444443 7888999999985 654433 35799999988854332 22344566788999998776443
Q ss_pred CCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-CC--eEEEEECCCCeEEE
Q 023642 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DD--CIYVYDLEANKLSL 263 (279)
Q Consensus 189 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-d~--~i~vwd~~~~~~~~ 263 (279)
.+..|.++|+.++....+.... .......|+|||+.|+..+. .+ .|++.|+.+++..+
T Consensus 255 g~~~Iy~~dl~~g~~~~LT~~~-----------------~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r 315 (419)
T PRK04043 255 GQPDIYLYDTNTKTLTQITNYP-----------------GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ 315 (419)
T ss_pred CCcEEEEEECCCCcEEEcccCC-----------------CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe
Confidence 2457888899888754433211 11234579999998776553 22 68999998876633
No 264
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.51 E-value=4.7e-05 Score=65.06 Aligned_cols=162 Identities=20% Similarity=0.254 Sum_probs=95.6
Q ss_pred cCccCCCCee--e--ccccceEeeeeecCCCCc----ee-eCCCCCeEEEEECCCCCEEEEE-eCCCcEEEEEcC--CCe
Q 023642 90 EGNYSGRGRF--S--AADCCHMLSRYLPVNGPW----PV-DQTTSRAYVSQFSADGSLFVAG-FQASQIRIYDVE--RGW 157 (279)
Q Consensus 90 ~~~~~~~~~~--~--~~d~~~~~~~~~~~~~~~----~l-~~h~~~V~~~~~spd~~~l~s~-~~d~~i~iwd~~--~~~ 157 (279)
...+.+++++ . -..+.+.++++....... .+ ......-.-++|+|+++++... -.+++|.++++. .+.
T Consensus 148 ~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~ 227 (345)
T PF10282_consen 148 QVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGS 227 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred eEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCc
Confidence 3456777664 1 123445555554433221 11 2334567889999999988655 456789999988 442
Q ss_pred E--Eeeeeec-cCC--CcceEEEEECCCCCEEEEEe-CCCeEEEEECC--CCceeeeeccccccceeEEeeCCCCCcccc
Q 023642 158 K--IQKDILA-KSL--RWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVG--SGTMESLANVTEIHDGLDFSAADDGGYSFG 229 (279)
Q Consensus 158 ~--~~~~~~~-~~~--~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (279)
. +...... .+. ......++++|||++|+++. ....|.+|++. ++....... +...+. .
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~---------~~~~G~-----~ 293 (345)
T PF10282_consen 228 LTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT---------VPTGGK-----F 293 (345)
T ss_dssp EEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE---------EEESSS-----S
T ss_pred eeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE---------EeCCCC-----C
Confidence 2 1111111 111 12578999999999987766 56789999983 345433221 111111 5
Q ss_pred EEEEEEecCCCEEEEec-CCCeEEEEEC--CCCeEEEEE
Q 023642 230 IFSLKFSTDGRELVAGS-SDDCIYVYDL--EANKLSLRI 265 (279)
Q Consensus 230 v~~~~~sp~g~~l~t~s-~d~~i~vwd~--~~~~~~~~~ 265 (279)
...++++|+|++|+++. .++.|.+|++ .+|.....-
T Consensus 294 Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 294 PRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred ccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 78999999999998876 4668999876 566654433
No 265
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=6.6e-07 Score=77.17 Aligned_cols=153 Identities=16% Similarity=0.086 Sum_probs=111.5
Q ss_pred eccccceEeeeeecCC-------CCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcce
Q 023642 100 SAADCCHMLSRYLPVN-------GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTV 172 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~-------~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 172 (279)
.+.|+++.+|.+.+.. .+++...|..+|.++.|-.+.+.++++ |+-|.+||.-.+..+........| +.+
T Consensus 753 ASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~-~a~ 829 (1034)
T KOG4190|consen 753 ASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKE-GAG 829 (1034)
T ss_pred ccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCccc-CCC
Confidence 4679999999988743 245678999999999999998888755 789999999887665543322222 234
Q ss_pred EEEEECCC--CCE-EEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC
Q 023642 173 TDTSLSPD--QRH-LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (279)
Q Consensus 173 ~~~~~sp~--~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~ 249 (279)
..+..-|+ ... ++.++...+|+++|.+.++..+-.+..... +-...+.+++..|.|++++.+-..|
T Consensus 830 ~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~-----------~Pna~~R~iaVa~~GN~lAa~LSnG 898 (1034)
T KOG4190|consen 830 GNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAP-----------GPNALTRAIAVADKGNKLAAALSNG 898 (1034)
T ss_pred ceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCC-----------CCchheeEEEeccCcchhhHHhcCC
Confidence 44444453 333 344578889999999998875544332111 1224688999999999999999999
Q ss_pred eEEEEECCCCeEEEEEe
Q 023642 250 CIYVYDLEANKLSLRIL 266 (279)
Q Consensus 250 ~i~vwd~~~~~~~~~~~ 266 (279)
+|.+.|.++|+.+-.++
T Consensus 899 ci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 899 CIAILDARNGKVINSWR 915 (1034)
T ss_pred cEEEEecCCCceeccCC
Confidence 99999999999776554
No 266
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.47 E-value=4.6e-06 Score=72.71 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=81.9
Q ss_pred EEEEECC-CCCEEEEE----eCCCc----EEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 023642 128 YVSQFSA-DGSLFVAG----FQASQ----IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (279)
Q Consensus 128 ~~~~~sp-d~~~l~s~----~~d~~----i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~ 198 (279)
.++.||- +...+.+- +.+|. -++|++..++........-.....|.+++++|+...++.|+.||.|.+||.
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~ 288 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT 288 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence 5566765 44445443 33443 456777665432222223356668999999999999999999999999999
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCe
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 260 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~ 260 (279)
..+...... ....++.++|+|+|.++++|+.-|.+.+||+.-+.
T Consensus 289 ~~~~t~~~k------------------a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 289 TRGVTLLAK------------------AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred CCCeeeeee------------------ecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 876543221 11267889999999999999999999999997544
No 267
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.44 E-value=1.8e-05 Score=65.01 Aligned_cols=124 Identities=19% Similarity=0.329 Sum_probs=86.9
Q ss_pred eEEEEECCCCCEEEEEeC-CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe-CCCeEEEEECCC--Cc
Q 023642 127 AYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGS--GT 202 (279)
Q Consensus 127 V~~~~~spd~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~--~~ 202 (279)
+-...+.|++++|++..- --+|.+|+++.|...........-....+.+.|+|++++..... .+++|-+|.... ++
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~ 226 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK 226 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce
Confidence 888999999999988743 23799999998754332222223345688999999999976555 688999999887 45
Q ss_pred eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-CCeEEEEECCC
Q 023642 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEA 258 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-d~~i~vwd~~~ 258 (279)
...++.....+.. |.+. .+...+..+|||++|..+.+ ...|.+|.+..
T Consensus 227 ~~~lQ~i~tlP~d--F~g~------~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 227 FEELQTIDTLPED--FTGT------NWAAAIHISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred EEEeeeeccCccc--cCCC------CceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 4444443333322 3333 36788999999999988764 34788887754
No 268
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.41 E-value=1.4e-05 Score=77.42 Aligned_cols=133 Identities=18% Similarity=0.137 Sum_probs=88.1
Q ss_pred CeEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeEEeeee----------eccC--------CCcceEEEEECCCCCEEEE
Q 023642 126 RAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDI----------LAKS--------LRWTVTDTSLSPDQRHLVY 186 (279)
Q Consensus 126 ~V~~~~~spd~~~l-~s~~~d~~i~iwd~~~~~~~~~~~----------~~~~--------~~~~v~~~~~sp~~~~l~~ 186 (279)
....++|+|++..| ++-+.+++|++||+.++....... .+.. .-.....++++|+|..+++
T Consensus 741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVA 820 (1057)
T PLN02919 741 QPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVA 820 (1057)
T ss_pred CccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEE
Confidence 45679999999854 555677899999998764211100 0000 0112468999999998888
Q ss_pred EeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeE
Q 023642 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (279)
Q Consensus 187 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~ 261 (279)
-..++.|++||..++....+..... .+.. .+....+.-.....++++++|+.+++-+.+++|++||+.+++.
T Consensus 821 Ds~N~rIrviD~~tg~v~tiaG~G~--~G~~-dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 821 DSYNHKIKKLDPATKRVTTLAGTGK--AGFK-DGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCeEEEEeccCC--cCCC-CCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 8899999999998877643322100 0000 0000011223577899999999988888899999999998764
No 269
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.41 E-value=3e-05 Score=67.78 Aligned_cols=121 Identities=17% Similarity=0.194 Sum_probs=78.8
Q ss_pred ceeeCCCCCeEEEEECCCCCEEEEE-eCC--CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC-C--
Q 023642 118 WPVDQTTSRAYVSQFSADGSLFVAG-FQA--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-P-- 191 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~~l~s~-~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~-- 191 (279)
..+....+......|+|||+.++.. +.+ ..|.++|+.++.... +..+........|+|||+.|+..+.. +
T Consensus 226 ~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~----LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~ 301 (419)
T PRK04043 226 EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ----ITNYPGIDVNGNFVEDDKRIVFVSDRLGYP 301 (419)
T ss_pred EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE----cccCCCccCccEECCCCCEEEEEECCCCCc
Confidence 3455566667788999999877643 333 468888988775322 12222223456899999988766532 2
Q ss_pred eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC---------CeEEEEECCCCeE
Q 023642 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---------DCIYVYDLEANKL 261 (279)
Q Consensus 192 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d---------~~i~vwd~~~~~~ 261 (279)
.|.++|+.+++...+... + . ....|+|||++++..+.. ..|++.|+.++..
T Consensus 302 ~Iy~~dl~~g~~~rlt~~----------g--------~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 302 NIFMKKLNSGSVEQVVFH----------G--------K-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred eEEEEECCCCCeEeCccC----------C--------C-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence 688889988776433210 0 1 124899999988865543 3688889887764
No 270
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.41 E-value=1.4e-05 Score=68.06 Aligned_cols=109 Identities=23% Similarity=0.250 Sum_probs=84.7
Q ss_pred ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCC----eE
Q 023642 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP----IV 193 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----~i 193 (279)
..+...-+.|.++..+|||++++.+.....|.+.|++++..... -+...+-|+..+|||++++||.+--+| .|
T Consensus 395 kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~i---dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~I 471 (668)
T COG4946 395 KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLI---DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSI 471 (668)
T ss_pred EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEe---cccccceeEEEEEcCCceeEEEecCcceeeeeE
Confidence 45677789999999999999999999999999999999954322 345566899999999999999887665 59
Q ss_pred EEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec
Q 023642 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
+++|+.+++........ +.=++-+|.||+++|..-+
T Consensus 472 klydm~~~Kiy~vTT~t-----------------a~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 472 KLYDMDGGKIYDVTTPT-----------------AYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EEEecCCCeEEEecCCc-----------------ccccCcccCCCCcEEEEEe
Confidence 99999998874433211 1224567889999887544
No 271
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.39 E-value=1.9e-06 Score=69.88 Aligned_cols=111 Identities=22% Similarity=0.181 Sum_probs=81.3
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEE-EEeCCCeEEEEECCCCceeeeec
Q 023642 130 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTMESLAN 208 (279)
Q Consensus 130 ~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~ 208 (279)
..|||+|+++|+.++- ++.|-|..+-+..+.+ .+ -..|.-+.|..|..+++ ....|+.|.+|++...+..+...
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf-~c---ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId 88 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF-LC---LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID 88 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHH-HH---HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec
Confidence 6799999999999886 8889998876433321 11 22477788999887765 45678899999998776543322
Q ss_pred cccccceeEEeeCCCCCccccEEEEEEecCCCEEE-EecCCCeEEEEECCCCeE
Q 023642 209 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKL 261 (279)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-t~s~d~~i~vwd~~~~~~ 261 (279)
. ....+.+++|||||+.++ +..-+-.|.||.+.+.+.
T Consensus 89 e----------------g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 89 E----------------GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG 126 (447)
T ss_pred c----------------CCCcceeeeECCCcceEeeeecceeEEEEEEecccee
Confidence 1 123788999999997765 455688999999987654
No 272
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.38 E-value=7.6e-05 Score=61.48 Aligned_cols=117 Identities=14% Similarity=0.246 Sum_probs=83.4
Q ss_pred EEEEECCCCCEEEEEeC-CCcEEEEEcCC-CeEEeeeeeccCCCcc----------eEEEEECCCCCEEEEEeC-CCeEE
Q 023642 128 YVSQFSADGSLFVAGFQ-ASQIRIYDVER-GWKIQKDILAKSLRWT----------VTDTSLSPDQRHLVYASM-SPIVH 194 (279)
Q Consensus 128 ~~~~~spd~~~l~s~~~-d~~i~iwd~~~-~~~~~~~~~~~~~~~~----------v~~~~~sp~~~~l~~~~~-d~~i~ 194 (279)
..++++++|++|+++.. -|.|.++-+.. |... .......|.+. +....|.|++++|++++. --.|.
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~-~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~ 170 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQ-PVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIF 170 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccc-cceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEE
Confidence 78999999999988854 47899998865 4222 11112233333 888999999999998873 34799
Q ss_pred EEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-CCeEEEEECCC
Q 023642 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEA 258 (279)
Q Consensus 195 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-d~~i~vwd~~~ 258 (279)
+|++..|......... +.+ + ....-+.|+|++++.....+ +++|-+|....
T Consensus 171 ~y~~~dg~L~~~~~~~-------v~~-G-----~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 171 LYDLDDGKLTPADPAE-------VKP-G-----AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred EEEcccCccccccccc-------cCC-C-----CCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence 9999987764332211 111 1 25678999999999887765 88999999876
No 273
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.37 E-value=1e-06 Score=70.90 Aligned_cols=145 Identities=15% Similarity=0.189 Sum_probs=94.6
Q ss_pred eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCC-----cceEEEEECCCC-CEEEEEeCCCeEE
Q 023642 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR-----WTVTDTSLSPDQ-RHLVYASMSPIVH 194 (279)
Q Consensus 121 ~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~v~~~~~sp~~-~~l~~~~~d~~i~ 194 (279)
..|+-.++++.|+.|...++++. |-+|.+|+++-..-.-.+.....|. .-|++..|+|.. ..+...+..|.|+
T Consensus 169 NaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred ccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 57889999999999998888764 6899999987432211222233332 358899999964 5677788899999
Q ss_pred EEECCCCceeeeec-cc-cccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC-CeEEEEEeCCC
Q 023642 195 IVDVGSGTMESLAN-VT-EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-NKLSLRILAHT 269 (279)
Q Consensus 195 i~d~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~-~~~~~~~~~h~ 269 (279)
+-|++......... .. ....+.....- .+-...|..+.|+++|+++++-+. -+|++||+.. ..|+.+++-|.
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff--~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~ 322 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFF--EEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHC 322 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhH--HHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHH
Confidence 99998433211110 00 00011000000 011246889999999999987553 5899999985 45888887664
No 274
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.35 E-value=4.3e-05 Score=62.54 Aligned_cols=176 Identities=12% Similarity=0.110 Sum_probs=120.5
Q ss_pred eccccceEeeeeecCCCCc--eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-eEEeeeeeccCCCcceEEEE
Q 023642 100 SAADCCHMLSRYLPVNGPW--PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTS 176 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~--~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~ 176 (279)
.+.|+++.+|.-.+..+-+ +......+++++.+.++...|+.|-..|++.-+.+..- .+.........|...|..+-
T Consensus 42 ~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~i 121 (404)
T KOG1409|consen 42 VSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIV 121 (404)
T ss_pred ccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEE
Confidence 4678888888766654433 34456789999999999999999999999988876431 11111122457888999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEECCCCceeeee----cccccc--ceeEEeeCCC-------------------CCccccEE
Q 023642 177 LSPDQRHLVYASMSPIVHIVDVGSGTMESLA----NVTEIH--DGLDFSAADD-------------------GGYSFGIF 231 (279)
Q Consensus 177 ~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~--~~~~~~~~~~-------------------~~~~~~v~ 231 (279)
|+-...++++.+.|..+.---.+.+....-. ...... -.+.|.++.. ++|.+.+.
T Consensus 122 f~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~ 201 (404)
T KOG1409|consen 122 FSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVT 201 (404)
T ss_pred ecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceE
Confidence 9988889999998876544444433321100 000000 0122332222 67889999
Q ss_pred EEEEecCCCEEEEecCCCeEEEEECCCCe-EEEEEeCCCcceeEE
Q 023642 232 SLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRILAHTVNIALW 275 (279)
Q Consensus 232 ~~~~sp~g~~l~t~s~d~~i~vwd~~~~~-~~~~~~~h~~~v~~v 275 (279)
+++|.|..+.|.+|..|..+.+||+..++ ....+.+|.+.|..+
T Consensus 202 ~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 202 CLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL 246 (404)
T ss_pred EEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhh
Confidence 99999999999999999999999997654 445667887776554
No 275
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=9.3e-06 Score=73.03 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=83.8
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCC-----CCEEEEEeCCCeEEEEECCCC-ceeee
Q 023642 133 SADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-----QRHLVYASMSPIVHIVDVGSG-TMESL 206 (279)
Q Consensus 133 spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~l~~~~~d~~i~i~d~~~~-~~~~~ 206 (279)
.-+|.++++++.||+|.|-.+.+.+.... .....++.+++++|+ .+.+++|+..| +.++.-.-- .....
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~----~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v 154 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQ----YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV 154 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCcccee----EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce
Confidence 44799999999999999999988755433 244558999999998 56788998888 666643221 11111
Q ss_pred eccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCc
Q 023642 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTV 270 (279)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~ 270 (279)
..+. ..+.|.+++|. |.++|.++.+| |+|||+.+++.+..++-...
T Consensus 155 ----------~l~~-----~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~ 200 (846)
T KOG2066|consen 155 ----------VLSE-----GEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQ 200 (846)
T ss_pred ----------eeec-----CccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCC
Confidence 1111 22489999997 88999998887 99999999988887765433
No 276
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.35 E-value=1e-06 Score=71.79 Aligned_cols=158 Identities=16% Similarity=0.208 Sum_probs=97.5
Q ss_pred eccccceEeeeeecCCCCce--------eeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCe-EEeeeee-----
Q 023642 100 SAADCCHMLSRYLPVNGPWP--------VDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGW-KIQKDIL----- 164 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~--------l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~----- 164 (279)
++.|-.+-+|++.-..+... ....+.-|++..|+| ..+.|+..+..|+|++-|++... |......
T Consensus 181 SADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 181 SADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred eccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 34444666787765544332 233467789999999 56788888889999999998431 1110000
Q ss_pred -------ccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc-e-eeeeccccccceeEEeeCCCCCccccEEEEEE
Q 023642 165 -------AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT-M-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKF 235 (279)
Q Consensus 165 -------~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 235 (279)
+.+--..|.++.|+++|+|+++-+. -+|++||+.... . ...+....... .++.-....--..-+.++|
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~--kLc~lYEnD~IfdKFec~~ 337 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRS--KLCSLYENDAIFDKFECSW 337 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHH--HHHHHhhccchhheeEEEE
Confidence 1122236899999999999998655 489999995432 2 11111100000 0000000001123467899
Q ss_pred ecCCCEEEEecCCCeEEEEECCCCe
Q 023642 236 STDGRELVAGSSDDCIYVYDLEANK 260 (279)
Q Consensus 236 sp~g~~l~t~s~d~~i~vwd~~~~~ 260 (279)
+-++.+++||+....++++++..|.
T Consensus 338 sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 338 SGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred cCCcceEecccccceEEEecCCCCc
Confidence 9999999999999999999976543
No 277
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.34 E-value=6.4e-05 Score=63.62 Aligned_cols=117 Identities=20% Similarity=0.215 Sum_probs=82.5
Q ss_pred EECC-CCCEEEEEeCCCcEEEEEcCCCe-----EEeeeeecc-----CCCcceEEEEECCCCCEEEEEe----------C
Q 023642 131 QFSA-DGSLFVAGFQASQIRIYDVERGW-----KIQKDILAK-----SLRWTVTDTSLSPDQRHLVYAS----------M 189 (279)
Q Consensus 131 ~~sp-d~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~-----~~~~~v~~~~~sp~~~~l~~~~----------~ 189 (279)
.|++ +|+++..... |+|.+.|+.... ..... ... -..+...-++++|+++.++... .
T Consensus 200 ~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~-~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~ 277 (352)
T TIGR02658 200 AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAF-TEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTA 277 (352)
T ss_pred ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeec-cccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCC
Confidence 3455 8888877777 999999965431 11111 011 0122344599999999888743 2
Q ss_pred CCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCC-EEEEec-CCCeEEEEECCCCeEEEEEe
Q 023642 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGS-SDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 190 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~t~s-~d~~i~vwd~~~~~~~~~~~ 266 (279)
.+.|.++|..+++........ ..+..++|+||++ +|++.. .++.|.++|..+++.+.++.
T Consensus 278 ~~~V~ViD~~t~kvi~~i~vG-----------------~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 278 SRFLFVVDAKTGKRLRKIELG-----------------HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred CCEEEEEECCCCeEEEEEeCC-----------------CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 257999999998876543321 1688999999999 777666 57889999999999999984
No 278
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.31 E-value=0.00027 Score=60.37 Aligned_cols=126 Identities=21% Similarity=0.326 Sum_probs=79.8
Q ss_pred CCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCCCe--EEeeeeeccCCCcceEEEEECCCCCEEEEEe-CCCeEEEEECC
Q 023642 124 TSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVG 199 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~-d~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~ 199 (279)
.....++.|+||++++++... ...|.+|+++... ...............+.++|+|++++++... .++.|.+|++.
T Consensus 143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 456788999999998877643 3489999997654 2111111123444688999999999876554 67889999888
Q ss_pred --CCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-CCeEEEEECC
Q 023642 200 --SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLE 257 (279)
Q Consensus 200 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-d~~i~vwd~~ 257 (279)
++.............. +. .......++++|||++|+++.. +++|.+|++.
T Consensus 223 ~~~g~~~~~~~~~~~~~~--~~------~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 223 PSDGSLTEIQTISTLPEG--FT------GENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp TTTTEEEEEEEEESCETT--SC------SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred ccCCceeEEEEeeecccc--cc------ccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 4543322222111110 00 1126788999999999887664 6689999993
No 279
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.29 E-value=1.8e-05 Score=74.25 Aligned_cols=157 Identities=14% Similarity=0.058 Sum_probs=101.4
Q ss_pred cccceEeeeeecCCCCceee--CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 102 ADCCHMLSRYLPVNGPWPVD--QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 102 ~d~~~~~~~~~~~~~~~~l~--~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.-+.+..|+.......|.++ --.+.|++++.+|.++++++|...|.+-+||++=+..+.. ....+..+++.+..+|
T Consensus 1171 ~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~s--w~~P~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILS--WEHPARAPIRHVWLCP 1248 (1431)
T ss_pred eccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeec--ccCcccCCcceEEeec
Confidence 34445556665555445543 2358899999999999999999999999999997755543 2345557888888877
Q ss_pred CC---CEEEEEe--CCCeEEEEECCCCceeeeeccccccceeE-EeeCC--CCCccccEEEEEEecCCCEEEEecCCCeE
Q 023642 180 DQ---RHLVYAS--MSPIVHIVDVGSGTMESLANVTEIHDGLD-FSAAD--DGGYSFGIFSLKFSTDGRELVAGSSDDCI 251 (279)
Q Consensus 180 ~~---~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~v~~~~~sp~g~~l~t~s~d~~i 251 (279)
-. ...++++ ..+.+.+|++.+|.+............+. +.+.. .+.+.-......+..-+.++.+|+.|..|
T Consensus 1249 ~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kI 1328 (1431)
T KOG1240|consen 1249 TYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKI 1328 (1431)
T ss_pred cCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccce
Confidence 43 4544443 57789999999998765544431211111 11111 01122122333344446688899999999
Q ss_pred EEEECCCCe
Q 023642 252 YVYDLEANK 260 (279)
Q Consensus 252 ~vwd~~~~~ 260 (279)
+.||....+
T Consensus 1329 R~wD~~~p~ 1337 (1431)
T KOG1240|consen 1329 RKWDPTRPE 1337 (1431)
T ss_pred eeccCCCcc
Confidence 999987644
No 280
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.29 E-value=1.7e-06 Score=83.70 Aligned_cols=142 Identities=14% Similarity=0.134 Sum_probs=103.7
Q ss_pred eccccceEeeeeecCCCCceee-CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-----eEEe-------------
Q 023642 100 SAADCCHMLSRYLPVNGPWPVD-QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-----WKIQ------------- 160 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~-~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~-----~~~~------------- 160 (279)
++.|+.+.+|.+-..+...+.. +-...|+.+.|+.+|+.+..+..||.+.+|.+... +|-.
T Consensus 2226 gs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~s~~ 2305 (2439)
T KOG1064|consen 2226 GSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIGSLL 2305 (2439)
T ss_pred cCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCccccceeeeehhh
Confidence 5667778877766555554432 23388899999999998888888888888866421 0000
Q ss_pred ----------------------eeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEE
Q 023642 161 ----------------------KDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDF 218 (279)
Q Consensus 161 ----------------------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 218 (279)
.......|.+.++++++.|..+.|++|+.+|.|++||++..+.+
T Consensus 2306 ~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~-------------- 2371 (2439)
T KOG1064|consen 2306 ATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLR-------------- 2371 (2439)
T ss_pred hccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHH--------------
Confidence 00011467778999999999999999999999999999876653
Q ss_pred eeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 219 SAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 219 ~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
|..+. +. ...++++|+..|.|+||++..-..+.+++.
T Consensus 2372 -------h~~~~----~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2372 -------HTFQA----LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred -------HHhhh----hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 32233 33 456889999999999999998877777764
No 281
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.27 E-value=0.00022 Score=58.54 Aligned_cols=134 Identities=24% Similarity=0.248 Sum_probs=89.4
Q ss_pred EEECCCCCEEEEEeC-----CCcEEEEEcCCC-eEEeeeeeccCCCcceEEEEECCCCCEEEEEeC--------------
Q 023642 130 SQFSADGSLFVAGFQ-----ASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-------------- 189 (279)
Q Consensus 130 ~~~spd~~~l~s~~~-----d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-------------- 189 (279)
-.|||||++|++.-+ .|.|-|||...+ ..+. .+..|.-....+.+.|||+.|+.+..
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~---E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLN 132 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIG---EFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLN 132 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEe---EecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecC
Confidence 579999999988743 478999999943 3333 34556556788999999988877652
Q ss_pred ----CCeEEEEECCCCceeeeeccccc-----cceeEEeeCCC-------------------------------------
Q 023642 190 ----SPIVHIVDVGSGTMESLANVTEI-----HDGLDFSAADD------------------------------------- 223 (279)
Q Consensus 190 ----d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~------------------------------------- 223 (279)
+..+-+.|..+|+.......... ...+.+.+.+.
T Consensus 133 l~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~ 212 (305)
T PF07433_consen 133 LDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQW 212 (305)
T ss_pred hhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHH
Confidence 23466667788876443322111 11112222211
Q ss_pred CCccccEEEEEEecCCCEEEEec-CCCeEEEEECCCCeEEEEEe
Q 023642 224 GGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 224 ~~~~~~v~~~~~sp~g~~l~t~s-~d~~i~vwd~~~~~~~~~~~ 266 (279)
....+.+-+|++++++.+++..+ ..+.+.+||..+++.+....
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP 256 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc
Confidence 12346788999999998876555 67899999999998876654
No 282
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.23 E-value=6.4e-05 Score=59.62 Aligned_cols=125 Identities=12% Similarity=-0.011 Sum_probs=85.2
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeE
Q 023642 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLD 217 (279)
Q Consensus 138 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 217 (279)
.+..++.|.++++.+++-+..... ..... -.+.+++++||++++++.+....|..|.+......... . .
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~-~h~~~--~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~-------~ 198 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFA-VHNQN--LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-I-------Y 198 (344)
T ss_pred ceeeccCCcceeEEEEecCcccce-eeccc--cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee-e-------E
Confidence 466778888999998875532221 11111 23789999999999999999999999988764432111 1 1
Q ss_pred EeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC-eEEEEE----eCCCcceeEEEee
Q 023642 218 FSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRI----LAHTVNIALWITC 278 (279)
Q Consensus 218 ~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~-~~~~~~----~~h~~~v~~v~~~ 278 (279)
..+..+ .-.+.+|+.....+|++..|+++.|||++.- .++... +.|.+.++.+-.+
T Consensus 199 ~a~t~D-----~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fs 259 (344)
T KOG4532|consen 199 EAPTSD-----HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFS 259 (344)
T ss_pred ecccCC-----CceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEec
Confidence 112222 4478899999999999999999999999863 333322 3577777766443
No 283
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.17 E-value=1.2e-05 Score=71.72 Aligned_cols=159 Identities=16% Similarity=0.193 Sum_probs=106.1
Q ss_pred ccccceEeeeeecCCCCceeeCCC-CCeEEEEECCCCC---EEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEE
Q 023642 101 AADCCHMLSRYLPVNGPWPVDQTT-SRAYVSQFSADGS---LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS 176 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~~~~~l~~h~-~~V~~~~~spd~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 176 (279)
+..+.+++--..|...+..+...+ =.|-.+.|+|... ++++.+. ..-.+|++.....-.....+.+|...|+++-
T Consensus 43 sr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~-qkaiiwnlA~ss~~aIef~lhghsraitd~n 121 (1081)
T KOG0309|consen 43 SRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSN-QKAIIWNLAKSSSNAIEFVLHGHSRAITDIN 121 (1081)
T ss_pred hhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCc-chhhhhhhhcCCccceEEEEecCccceeccc
Confidence 344444444344444444443322 3367788888443 4555554 4556899875433333345689999999999
Q ss_pred ECCCC-CEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEE
Q 023642 177 LSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 177 ~sp~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd 255 (279)
|+|.. ..+++++.|..+..||++........ +.. .......++|+.-...+...+..+.|++||
T Consensus 122 ~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys----------~~~-----w~s~asqVkwnyk~p~vlasshg~~i~vwd 186 (1081)
T KOG0309|consen 122 FNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS----------TSS-----WRSAASQVKWNYKDPNVLASSHGNDIFVWD 186 (1081)
T ss_pred cCCCCCcceeeccccccceeeeccCCCcceee----------eec-----ccccCceeeecccCcchhhhccCCceEEEe
Confidence 99965 46899999999999999986642111 111 122567789987666666667788899999
Q ss_pred CCCC-eEEEEEeCCCcceeEE
Q 023642 256 LEAN-KLSLRILAHTVNIALW 275 (279)
Q Consensus 256 ~~~~-~~~~~~~~h~~~v~~v 275 (279)
.+.| .++..+++|...|+.+
T Consensus 187 ~r~gs~pl~s~K~~vs~vn~~ 207 (1081)
T KOG0309|consen 187 LRKGSTPLCSLKGHVSSVNSI 207 (1081)
T ss_pred ccCCCcceEEecccceeeehH
Confidence 9875 5889999998888764
No 284
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=6.5e-06 Score=71.24 Aligned_cols=131 Identities=11% Similarity=0.152 Sum_probs=90.1
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-eEE---eeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WKI---QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~-~~~---~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (279)
+.||+..|..++--.+.+-+++++.|++|++|.++.. ... ........|+.+|.++.|-.+-++++++ |+-+++
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHl 808 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHL 808 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCccee
Confidence 6899999999987778888999999999999998642 111 1123467899999999999998888775 678999
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC--CCEEEEe-cCCCeEEEEECCCCeEEEEEe
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAG-SSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~t~-s~d~~i~vwd~~~~~~~~~~~ 266 (279)
||.--++...... ... ..+.+..+..-|+ ...++.+ +...+|+++|.+.++....++
T Consensus 809 WDPFigr~Laq~~--dap------------k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~k 868 (1034)
T KOG4190|consen 809 WDPFIGRLLAQME--DAP------------KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELK 868 (1034)
T ss_pred ecccccchhHhhh--cCc------------ccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEE
Confidence 9987666532111 100 0112333333343 3344444 568899999999987665554
No 285
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.11 E-value=9.1e-06 Score=63.97 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=57.3
Q ss_pred ceEEEEECCCCC-EEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC-CCEEEEecCC
Q 023642 171 TVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSD 248 (279)
Q Consensus 171 ~v~~~~~sp~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~t~s~d 248 (279)
.|++++-+|..+ .+++|+.||.+-+||.+........ . ..|...++.+.|+|. +..|+++++|
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~--l-------------~ahk~~i~eV~FHpk~p~~Lft~sed 245 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL--L-------------KAHKAEIWEVHFHPKNPEHLFTCSED 245 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH--H-------------HHhhhhhhheeccCCCchheeEecCC
Confidence 488999999654 5678889999999999987432111 0 116679999999995 7789999999
Q ss_pred CeEEEEECCC
Q 023642 249 DCIYVYDLEA 258 (279)
Q Consensus 249 ~~i~vwd~~~ 258 (279)
|.+..||..+
T Consensus 246 Gslw~wdas~ 255 (319)
T KOG4714|consen 246 GSLWHWDAST 255 (319)
T ss_pred CcEEEEcCCC
Confidence 9999999864
No 286
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.10 E-value=0.00032 Score=59.42 Aligned_cols=108 Identities=17% Similarity=0.096 Sum_probs=76.4
Q ss_pred CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC----------CCeEEEEECCCCceeeeeccccccce
Q 023642 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----------SPIVHIVDVGSGTMESLANVTEIHDG 215 (279)
Q Consensus 146 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~ 215 (279)
++|.+.|..+.+.+..+..... -..+ ++||++.|+.+.. +..|.+||..+.+...-......+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~----P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~- 100 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL----PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR- 100 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC----Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch-
Confidence 8999999999877665433222 2234 9999999876665 7899999999988754333211100
Q ss_pred eEEeeCCCCCccccEEEEEEecCCCEEEEec-C-CCeEEEEECCCCeEEEEEeC
Q 023642 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGS-S-DDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 216 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s-~-d~~i~vwd~~~~~~~~~~~~ 267 (279)
+. .-.....++++|||++|+... . +..|.+.|+.+++.+.++.-
T Consensus 101 --~~------~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 101 --FL------VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred --hh------ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence 00 001234688999999998766 3 68999999999999998874
No 287
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.07 E-value=0.00029 Score=68.50 Aligned_cols=135 Identities=20% Similarity=0.196 Sum_probs=83.5
Q ss_pred EEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeee-----ccC------CCcceEEEEECCCCCEE-EEEeCCCeEE
Q 023642 128 YVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDIL-----AKS------LRWTVTDTSLSPDQRHL-VYASMSPIVH 194 (279)
Q Consensus 128 ~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~------~~~~v~~~~~sp~~~~l-~~~~~d~~i~ 194 (279)
..++|+| ++.++++.+.+++|++||..++........ ..+ .-.....++++|++..| ++-+.++.|+
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Ir 765 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIR 765 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEE
Confidence 5789999 566667778889999999987743211000 000 11235679999999855 4555678999
Q ss_pred EEECCCCceeeeeccccc--cceeEEeeCCC---CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEE
Q 023642 195 IVDVGSGTMESLANVTEI--HDGLDFSAADD---GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 262 (279)
Q Consensus 195 i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~ 262 (279)
+||+.++........... .....|..... ...-.....++|+++|..+++-+.++.|++||..++...
T Consensus 766 v~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 766 ALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT 838 (1057)
T ss_pred EEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 999987664221100000 00000100000 001123468999999998888888999999999877654
No 288
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.05 E-value=6.5e-06 Score=67.25 Aligned_cols=114 Identities=15% Similarity=0.144 Sum_probs=83.2
Q ss_pred EEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEe
Q 023642 140 VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFS 219 (279)
Q Consensus 140 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 219 (279)
++.+-+..|-+-|+.+|.... + ...+.|.++.|...+++++.|..+|.|..+|++.+..-....... .+
T Consensus 228 fs~G~sqqv~L~nvetg~~qs----f-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r-----ly- 296 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS----F-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR-----LY- 296 (425)
T ss_pred ecccccceeEEEEeecccccc----c-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE-----EE-
Confidence 455566788888888873321 2 245579999999999999999999999999998762210000000 01
Q ss_pred eCCCCCccccEEEEEEec-CCCEEEEecCCCeEEEEECCCCeE---EEEEeCCCc
Q 023642 220 AADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKL---SLRILAHTV 270 (279)
Q Consensus 220 ~~~~~~~~~~v~~~~~sp-~g~~l~t~s~d~~i~vwd~~~~~~---~~~~~~h~~ 270 (279)
|.+.|+++..-. ++++|++.+.+|+|++||.+.-++ +.+++||..
T Consensus 297 ------h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN 345 (425)
T KOG2695|consen 297 ------HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVN 345 (425)
T ss_pred ------cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccc
Confidence 445788877655 688999999999999999987666 999999965
No 289
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.00 E-value=6.3e-05 Score=67.00 Aligned_cols=124 Identities=15% Similarity=0.193 Sum_probs=94.4
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~ 202 (279)
+...|.--+++..+.+++.|+.-|.+.+|+-..+..... ...+..+.+..+..+++..++|.|+..|.|.++.+..+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~--~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL--KNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc--cccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence 455666667888899999999999999999887754332 122244457778899999999999999999999887744
Q ss_pred eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
..... +....++.|...|++++|++++..|++|...|.|..-.+.+
T Consensus 110 p~~~~----------~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 PRDLD----------YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCcce----------eeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 32222 22222233777999999999999999999999998888776
No 290
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.98 E-value=0.00011 Score=67.37 Aligned_cols=123 Identities=14% Similarity=0.183 Sum_probs=86.2
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC---------CCeEEEE
Q 023642 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---------SPIVHIV 196 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---------d~~i~i~ 196 (279)
.|.-+.- +++.+.+|...|+|.+-|..+.+.++. +..|.+.|.++.. .|+.|++|+. |.-|++|
T Consensus 179 ~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht---~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVY 251 (1118)
T KOG1275|consen 179 GVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHT---FDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVY 251 (1118)
T ss_pred ceEEEEe--cCcEEEeecccceEEeecCCcCceeee---eeccccceeeeec--cCCeEEEeecccccccccccchhhhh
Confidence 4555544 678999999999999999999887776 5789888876554 7899999884 5669999
Q ss_pred ECCCCceeeeeccccccc----------eeEE-eeCCC-------------------CCccccEEEEEEecCCCEEEEec
Q 023642 197 DVGSGTMESLANVTEIHD----------GLDF-SAADD-------------------GGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~----------~~~~-~~~~~-------------------~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
|+++-+......+..... .+.. +..+. ......+..+.+|++|..++.|.
T Consensus 252 DLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd 331 (1118)
T KOG1275|consen 252 DLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGD 331 (1118)
T ss_pred hhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEec
Confidence 998765432222111110 0000 00000 11234588999999999999999
Q ss_pred CCCeEEEEE
Q 023642 247 SDDCIYVYD 255 (279)
Q Consensus 247 ~d~~i~vwd 255 (279)
.+|.|.+|-
T Consensus 332 ~~g~v~~wa 340 (1118)
T KOG1275|consen 332 HEGHVNLWA 340 (1118)
T ss_pred ccCcEeeec
Confidence 999999997
No 291
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.97 E-value=1.8e-05 Score=70.80 Aligned_cols=143 Identities=10% Similarity=0.134 Sum_probs=100.1
Q ss_pred eccccceEeeeeecCCCC---ceeeCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEE
Q 023642 100 SAADCCHMLSRYLPVNGP---WPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDT 175 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~---~~l~~h~~~V~~~~~spd~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 175 (279)
+-.....++|++...... ..+-+|...|+.+-|+|+. ..+++++.|-.+..||+++.....-. ...-......+
T Consensus 87 sts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys--~~~w~s~asqV 164 (1081)
T KOG0309|consen 87 STSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS--TSSWRSAASQV 164 (1081)
T ss_pred ecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceee--eecccccCcee
Confidence 444556677877654433 3478999999999999955 57799999999999999986432221 22223357789
Q ss_pred EECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC-CCEEEEecCCCeEEEE
Q 023642 176 SLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVY 254 (279)
Q Consensus 176 ~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~t~s~d~~i~vw 254 (279)
+|+--...+.+.+..+.|++||++.|.-..... ++|...|+.+.|..- ...+.+++.|++|++|
T Consensus 165 kwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~---------------K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw 229 (1081)
T KOG0309|consen 165 KWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSL---------------KGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFW 229 (1081)
T ss_pred eecccCcchhhhccCCceEEEeccCCCcceEEe---------------cccceeeehHHHhhhhhhhhcccCCCCceeee
Confidence 998755555555667789999999876422111 125557888888653 3456788999999999
Q ss_pred ECCCC
Q 023642 255 DLEAN 259 (279)
Q Consensus 255 d~~~~ 259 (279)
|....
T Consensus 230 ~y~kS 234 (1081)
T KOG0309|consen 230 DYSKS 234 (1081)
T ss_pred ccccc
Confidence 98643
No 292
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.93 E-value=0.0001 Score=65.97 Aligned_cols=120 Identities=8% Similarity=0.124 Sum_probs=92.2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeE------------EeeeeeccCCCcceEEEEECCCCCEEEEEeCCCe
Q 023642 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK------------IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~------------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~ 192 (279)
....+++|+....+++.|+.||.+++-.+.+... +..-..+.+|...|..+.|....+.|-+...+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 5678999999999999999999999998765311 1111235689999999999998889999999999
Q ss_pred EEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
|.+|-+-.|....-... +...+.|.+++|..||+.+...-.||.|.|=.+..
T Consensus 95 IiVWmlykgsW~EEMiN--------------nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG 146 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMIN--------------NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG 146 (1189)
T ss_pred EEEEeeecccHHHHHhh--------------CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc
Confidence 99999887765211100 11445899999999999998888888777666653
No 293
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=1.4e-05 Score=67.50 Aligned_cols=143 Identities=12% Similarity=0.066 Sum_probs=98.3
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC-CCeEEEEECCCC
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSG 201 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~i~i~d~~~~ 201 (279)
|.+.|+-+... -.+++++++-||.++.|--..-.-+.-...++.|.+.|.+++.+-++.++++.+. |+.++++|+.+-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 55556555443 3578999999999999986542223333456788889999999999999999777 999999998765
Q ss_pred ceeeeeccccccceeEEe-eCC-----------------------C----------------------------------
Q 023642 202 TMESLANVTEIHDGLDFS-AAD-----------------------D---------------------------------- 223 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~-~~~-----------------------~---------------------------------- 223 (279)
......+....+.-+.+. +.+ +
T Consensus 87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g 166 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG 166 (558)
T ss_pred chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc
Confidence 543222222211111000 000 0
Q ss_pred -------------------------------CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 224 -------------------------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 224 -------------------------------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
........++.|+|+|..+.+-+.|..|++++.++|+.++.+.
T Consensus 167 mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 167 MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred eeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence 1123456788999999999998899999999999998887775
No 294
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=0.00015 Score=63.03 Aligned_cols=112 Identities=19% Similarity=0.212 Sum_probs=79.2
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC-----------CCeEEE
Q 023642 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-----------SPIVHI 195 (279)
Q Consensus 127 V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-----------d~~i~i 195 (279)
-+.+.|||-|.+|++-..-| |.+|-=.+-..+++ -.|.+ |.-+.|||..+||++-+. ...++|
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~R----F~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQR----FYHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHh----ccCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 36689999999999998865 78996544433333 24554 899999999999998763 257999
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
||+++|............ .....-+.||.|++++|-... .+|.||+..+
T Consensus 287 WDI~tG~lkrsF~~~~~~-------------~~~WP~frWS~DdKy~Arm~~-~sisIyEtps 335 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSP-------------YLKWPIFRWSHDDKYFARMTG-NSISIYETPS 335 (698)
T ss_pred EEccccchhcceeccCCC-------------ccccceEEeccCCceeEEecc-ceEEEEecCc
Confidence 999999875433321110 012233689999999987665 5688888765
No 295
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.84 E-value=0.0015 Score=52.44 Aligned_cols=73 Identities=23% Similarity=0.234 Sum_probs=50.6
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCC--eEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 023642 130 SQFSADGSLFVAGFQASQIRIYDVERG--WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (279)
Q Consensus 130 ~~~spd~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~ 203 (279)
++.+++|++||.- +|..|.|-..+.. ..+.+........-.=+.++||||+..||.+...|+|++||+.+...
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l 77 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL 77 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee
Confidence 5667888877654 5678888776543 22222222223222357899999999999999999999999986554
No 296
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.83 E-value=0.0014 Score=59.50 Aligned_cols=144 Identities=13% Similarity=0.039 Sum_probs=99.8
Q ss_pred CCCCee-eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCC------------CEEEEEeCCCcEEEEEcCCCeEEe
Q 023642 94 SGRGRF-SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADG------------SLFVAGFQASQIRIYDVERGWKIQ 160 (279)
Q Consensus 94 ~~~~~~-~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~------------~~l~s~~~d~~i~iwd~~~~~~~~ 160 (279)
++.|-+ .+....+.+.+....+..+.++-|...|+.+.|.|-. -+||++...|+|.+||...+..+.
T Consensus 24 ~~~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~ 103 (1062)
T KOG1912|consen 24 SPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN 103 (1062)
T ss_pred CccceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh
Confidence 444444 2344555666666667777789999999999998832 156778888999999998875443
Q ss_pred eeeeccCCCcceEEEEECC---CC-CEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEe
Q 023642 161 KDILAKSLRWTVTDTSLSP---DQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS 236 (279)
Q Consensus 161 ~~~~~~~~~~~v~~~~~sp---~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 236 (279)
. +..+..++.++.|-| +. ..|+.-....++.+|+..+|+...... ..+ ....|+.+.
T Consensus 104 ~---l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~--ys~--------------~iLs~f~~D 164 (1062)
T KOG1912|consen 104 W---LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD--YSH--------------EILSCFRVD 164 (1062)
T ss_pred h---hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc--cCC--------------cceeeeeeC
Confidence 3 567788899999976 34 356677777899999999998743221 111 145667887
Q ss_pred c-CCCEEEEecCCCeEEEEEC
Q 023642 237 T-DGRELVAGSSDDCIYVYDL 256 (279)
Q Consensus 237 p-~g~~l~t~s~d~~i~vwd~ 256 (279)
| |.+.+...+..|.+.+-+.
T Consensus 165 Pfd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 165 PFDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred CCCcceEEEEccCceEEEEec
Confidence 7 4566666666677766665
No 297
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.79 E-value=0.0013 Score=52.72 Aligned_cols=119 Identities=15% Similarity=0.094 Sum_probs=77.9
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecccccc
Q 023642 134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH 213 (279)
Q Consensus 134 pd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 213 (279)
+++..+++++.++.|..||..+|+.+............ . ..++..++.+..++.++.+|..+|+...........
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~ 108 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA----P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP 108 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG----E-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce----e-eecccccccccceeeeEecccCCcceeeeecccccc
Confidence 35677777789999999999999877664331211111 1 224566677778889999999999985442111100
Q ss_pred ceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCC
Q 023642 214 DGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (279)
Q Consensus 214 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~ 269 (279)
. .. .........++..++.+..++.|..+|+++|+.+-..+...
T Consensus 109 ~-----------~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 109 P-----------AG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp T-----------CS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred c-----------cc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 0 00 11122223337788888889999999999999998887644
No 298
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.76 E-value=0.0011 Score=57.19 Aligned_cols=114 Identities=15% Similarity=0.227 Sum_probs=81.5
Q ss_pred CCCCCeEEEEECCCCCEEEE--EeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC---CeEEEE
Q 023642 122 QTTSRAYVSQFSADGSLFVA--GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIV 196 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~i~ 196 (279)
...++|...+|.|.++.|++ |-.+-.+.++|++.. . .- ......=..+-|+|.+++++.++-| |.+-+|
T Consensus 272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l-~~----~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~ 345 (561)
T COG5354 272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-L-RF----YFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIF 345 (561)
T ss_pred cccccceeeeecccCCceeEEecccccceeecccccc-e-EE----ecCCcccccccccCcccEEEEecCCccccceEEe
Confidence 56899999999998887754 457789999999876 2 21 1222234567899999999987755 579999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec------CCCeEEEEECCC
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------SDDCIYVYDLEA 258 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s------~d~~i~vwd~~~ 258 (279)
|..+..... .. |.+. ...-+.|+||++++.+.. .|..|.|||+..
T Consensus 346 ~~~~rf~~~-~~---------~~~~-------n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 346 DPAGRFKVA-GA---------FNGL-------NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred ccCCceEEE-EE---------eecC-------CceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 988755422 11 1111 345678999999988754 377899999964
No 299
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00027 Score=62.34 Aligned_cols=81 Identities=12% Similarity=0.061 Sum_probs=65.6
Q ss_pred eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceE-EEEECCCCCEEEEEeCCCeEEEEECC
Q 023642 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVT-DTSLSPDQRHLVYASMSPIVHIVDVG 199 (279)
Q Consensus 121 ~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~~~d~~i~i~d~~ 199 (279)
..-...+.-+.|+|.-.++|.+..+|.|.+..+. .+.+.. ..-+...++ +++|.|||+.|+.|-.||+|++.|+.
T Consensus 17 ~~l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwt---ip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 17 MSLPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWT---IPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred hccccceEEEEEcCccchhheeccCCcEEEEEec-cceeEe---ccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence 3445778889999999999999999999998888 434443 222444555 99999999999999999999999999
Q ss_pred CCceee
Q 023642 200 SGTMES 205 (279)
Q Consensus 200 ~~~~~~ 205 (279)
++....
T Consensus 93 ~~~~l~ 98 (665)
T KOG4640|consen 93 KGGRLV 98 (665)
T ss_pred CCCcee
Confidence 988643
No 300
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.0016 Score=56.80 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=81.1
Q ss_pred EEEECCCCC-EEE--EEeCC---------CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEE--EeCCCeEE
Q 023642 129 VSQFSADGS-LFV--AGFQA---------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY--ASMSPIVH 194 (279)
Q Consensus 129 ~~~~spd~~-~l~--s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~~~d~~i~ 194 (279)
.+.|++-|+ +|+ +..-| .++++.++....+... ..-.++|.++.|+|+++.++. |-+=-.+.
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~----L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvt 297 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP----LLKEGPVHDVTWSPSGREFAVVYGFMPAKVT 297 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe----cCCCCCceEEEECCCCCEEEEEEecccceEE
Confidence 467888665 333 23333 3688888883333222 244679999999999987654 44667899
Q ss_pred EEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC---CCeEEEEECCCCeEEEEEeCC
Q 023642 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 195 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~---d~~i~vwd~~~~~~~~~~~~h 268 (279)
|||++..-.-.+. .++-+++-|+|.|++++.++- -|.+-|||+.+.+++.++..-
T Consensus 298 ifnlr~~~v~df~-------------------egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~ 355 (566)
T KOG2315|consen 298 IFNLRGKPVFDFP-------------------EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA 355 (566)
T ss_pred EEcCCCCEeEeCC-------------------CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC
Confidence 9999864432211 125678899999999988774 468999999998888877643
No 301
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.72 E-value=0.017 Score=46.79 Aligned_cols=146 Identities=23% Similarity=0.180 Sum_probs=86.3
Q ss_pred eEEEEEC-CCCCEEEEEeCCCcEEEEEcCCCeEEeeeeec-cC-CCcceEEEEECCCCCEEEEEeCC--------CeEEE
Q 023642 127 AYVSQFS-ADGSLFVAGFQASQIRIYDVERGWKIQKDILA-KS-LRWTVTDTSLSPDQRHLVYASMS--------PIVHI 195 (279)
Q Consensus 127 V~~~~~s-pd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~-~~~~v~~~~~sp~~~~l~~~~~d--------~~i~i 195 (279)
...+++. +++.+++ +.. +.+.++|..+++........ .. ......++++.|+|++.++.... +.+..
T Consensus 42 ~~G~~~~~~~g~l~v-~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYV-ADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEEE-EET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEEE-EEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 6777777 6655544 444 44566699988543322221 12 34568899999999987776643 45777
Q ss_pred EECCCCceeeeeccccccceeEEeeCCC---------------------------------CCccccEEEEEEecCCCEE
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADD---------------------------------GGYSFGIFSLKFSTDGREL 242 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~v~~~~~sp~g~~l 242 (279)
++.. ++............++.|++++. ..-.+..-.+++..+|++.
T Consensus 120 ~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~ 198 (246)
T PF08450_consen 120 IDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLW 198 (246)
T ss_dssp EETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EE
T ss_pred ECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEE
Confidence 7777 55544444444445555555443 0001124567777788777
Q ss_pred EEecCCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 243 VAGSSDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 243 ~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
++....+.|.++|.. |+.+..+.-....+++++
T Consensus 199 va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~ 231 (246)
T PF08450_consen 199 VADWGGGRIVVFDPD-GKLLREIELPVPRPTNCA 231 (246)
T ss_dssp EEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEE
T ss_pred EEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEE
Confidence 766667788888876 887777765534555443
No 302
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.68 E-value=0.00011 Score=39.80 Aligned_cols=34 Identities=21% Similarity=0.395 Sum_probs=30.8
Q ss_pred eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 023642 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYD 152 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd 152 (279)
.+..|...|.++.|+|++.++++++.|+.+++|+
T Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 7 TLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3567889999999999999999999999999996
No 303
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.67 E-value=0.0014 Score=58.99 Aligned_cols=119 Identities=18% Similarity=0.248 Sum_probs=72.2
Q ss_pred CCcEEEEEcCC----CeEEeeeeeccCCCcceEEEEECCCCCEEEEEe-CCCeEEEEECCCCceeeeeccccccceeEEe
Q 023642 145 ASQIRIYDVER----GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGLDFS 219 (279)
Q Consensus 145 d~~i~iwd~~~----~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 219 (279)
+++|.+.|..+ +..+...+ ......+.++++|||+++++++ .+.++.|+|+.+.+...-.+. .... ...
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yI---PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~-~~~~--~vv 368 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYV---PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI-KPRD--AVV 368 (635)
T ss_pred CCEEEEEECCccccCCcceEEEE---ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC-Cccc--eEE
Confidence 35688888776 32222222 2233578899999999977655 689999999988553110000 0000 000
Q ss_pred eCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC----------CeEEEEEeCCCcc
Q 023642 220 AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA----------NKLSLRILAHTVN 271 (279)
Q Consensus 220 ~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~----------~~~~~~~~~h~~~ 271 (279)
..-.. --.....+|.++|....|...|..|..||+.+ ...+.++.-|.++
T Consensus 369 aevev--GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~p 428 (635)
T PRK02888 369 AEPEL--GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQP 428 (635)
T ss_pred Eeecc--CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCcc
Confidence 00000 00335678999998888888899999999976 3456666655443
No 304
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.67 E-value=8.5e-05 Score=66.42 Aligned_cols=122 Identities=11% Similarity=0.077 Sum_probs=94.6
Q ss_pred ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 023642 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d 197 (279)
+++.||...|..+.|+.+.+.|-++..+|-|.+|-+-.|......+. ....+.|.+++|..||..|+..-.||.|.+=.
T Consensus 65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiN-nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs 143 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMIN-NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS 143 (1189)
T ss_pred hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhh-CcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence 56899999999999999999999999999999999987744333221 23345789999999999999999999998877
Q ss_pred CCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
+.+.+.- -.... ......+.|++|.+.++.+-..|.++++|..
T Consensus 144 vdGNRIw-gKeLk----------------g~~l~hv~ws~D~~~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 144 VDGNRIW-GKELK----------------GQLLAHVLWSEDLEQALFKKANGETHLYDNQ 186 (1189)
T ss_pred eccceec-chhcc----------------hheccceeecccHHHHHhhhcCCcEEEeccc
Confidence 7654431 11110 0134578899999888888888899999874
No 305
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00058 Score=58.03 Aligned_cols=145 Identities=13% Similarity=0.008 Sum_probs=100.4
Q ss_pred eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-CeEEee-----------eeeccCCCcceEEEEECCCCCEEEEEe
Q 023642 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-GWKIQK-----------DILAKSLRWTVTDTSLSPDQRHLVYAS 188 (279)
Q Consensus 121 ~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~-~~~~~~-----------~~~~~~~~~~v~~~~~sp~~~~l~~~~ 188 (279)
.-|..+|..+.++|-+..+++....|.|.-|.... -+.... ...+........++.|+|++..+.+-+
T Consensus 141 klH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~ 220 (558)
T KOG0882|consen 141 KLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN 220 (558)
T ss_pred ccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC
Confidence 56899999999999999999999999999999873 111111 011123344678999999999999999
Q ss_pred CCCeEEEEECCCCceeeeeccccccc-----------eeEEeeC------CCCCccccEEEEEEecCCCEEEEecCCCeE
Q 023642 189 MSPIVHIVDVGSGTMESLANVTEIHD-----------GLDFSAA------DDGGYSFGIFSLKFSTDGRELVAGSSDDCI 251 (279)
Q Consensus 189 ~d~~i~i~d~~~~~~~~~~~~~~~~~-----------~~~~~~~------~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i 251 (279)
.|..|++++.++|+......-..... .+.|.-. -++...-.-..+.|...|++|+-++-=| |
T Consensus 221 ~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-i 299 (558)
T KOG0882|consen 221 PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-I 299 (558)
T ss_pred cccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-E
Confidence 99999999999998743222111000 0000000 0011223446778999999999887655 9
Q ss_pred EEEECCCCeEEEEEe
Q 023642 252 YVYDLEANKLSLRIL 266 (279)
Q Consensus 252 ~vwd~~~~~~~~~~~ 266 (279)
+|.++.++.++..+-
T Consensus 300 kvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 300 KVINLDTNTVVRILG 314 (558)
T ss_pred EEEEeecCeEEEEec
Confidence 999999998887764
No 306
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.64 E-value=0.00015 Score=66.16 Aligned_cols=110 Identities=13% Similarity=0.210 Sum_probs=83.3
Q ss_pred EEEEECCCCCEEEEEe----CCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 023642 128 YVSQFSADGSLFVAGF----QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (279)
Q Consensus 128 ~~~~~spd~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~ 203 (279)
+-..|+|...+|+.++ ..|.|-||- ++|++...+ ...-.+++++|+|..-.|+.|=.-|.+.+|...+.+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V----t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV----TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc----ccceehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence 4457999999998775 357888874 556543221 1122467899999988888888889999998877665
Q ss_pred eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
...... |..+|..+.|||+|..|+|+..-|.|.+|....
T Consensus 94 htv~~t----------------h~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 94 HTVVET----------------HPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred eeeccC----------------CCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 333222 778999999999999999999999999998763
No 307
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.56 E-value=5.9e-05 Score=68.96 Aligned_cols=125 Identities=21% Similarity=0.198 Sum_probs=94.1
Q ss_pred eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC--CeEEEE
Q 023642 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--PIVHIV 196 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--~~i~i~ 196 (279)
.+..|+...+|++|+-+.+.|+.|+..|.|++|++.+|..... ...|.++|+-+.=+.||..+++.+.- .-..+|
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s---~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES---VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc---ccccccccccccccCCcceeeeeccccCchHHHh
Confidence 4678889999999999999999999999999999999965443 46899999999999999887765533 257789
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEE
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI 265 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~ 265 (279)
++...... .. +|. .-.++.|+...++-+.|.....+.+||+.|+.+++++
T Consensus 1173 ~~~s~~~~-~H---------sf~---------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1173 DASSTGGP-RH---------SFD---------EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred ccccccCc-cc---------ccc---------ccceeehhhhHHHHHhcccccceEEEecccCcHHHHh
Confidence 98752211 00 111 2356888866555555666567999999998887773
No 308
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.56 E-value=0.0019 Score=56.56 Aligned_cols=135 Identities=21% Similarity=0.169 Sum_probs=79.5
Q ss_pred eEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEE-eCCC--cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCC
Q 023642 106 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAG-FQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR 182 (279)
Q Consensus 106 ~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 182 (279)
+.++++.....+..+ .-...-...+|+|||++|+.. ..|+ .|.++|+..+... + +..-.+.-..-.|+|||+
T Consensus 220 i~~~~l~~g~~~~i~-~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~---Lt~~~gi~~~Ps~spdG~ 294 (425)
T COG0823 220 IYYLDLNTGKRPVIL-NFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-R---LTNGFGINTSPSWSPDGS 294 (425)
T ss_pred EEEEeccCCccceee-ccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-e---cccCCccccCccCCCCCC
Confidence 334444444333333 234445567899999988654 5566 4666677776532 2 222222334678999999
Q ss_pred EEEEEeC-CC--eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC-Ce--EEEEEC
Q 023642 183 HLVYASM-SP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-DC--IYVYDL 256 (279)
Q Consensus 183 ~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d-~~--i~vwd~ 256 (279)
.|+..+. .| .|.+++..++....+.. ... .-..-.|+|||++++..+.. +. |.+.|+
T Consensus 295 ~ivf~Sdr~G~p~I~~~~~~g~~~~riT~----------~~~-------~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~ 357 (425)
T COG0823 295 KIVFTSDRGGRPQIYLYDLEGSQVTRLTF----------SGG-------GNSNPVWSPDGDKIVFESSSGGQWDIDKNDL 357 (425)
T ss_pred EEEEEeCCCCCcceEEECCCCCceeEeec----------cCC-------CCcCccCCCCCCEEEEEeccCCceeeEEecc
Confidence 9876653 34 47777777776533322 111 11266789999999876642 33 677777
Q ss_pred CCCeEE
Q 023642 257 EANKLS 262 (279)
Q Consensus 257 ~~~~~~ 262 (279)
.++...
T Consensus 358 ~~~~~~ 363 (425)
T COG0823 358 ASGGKI 363 (425)
T ss_pred CCCCcE
Confidence 665433
No 309
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.52 E-value=0.014 Score=40.52 Aligned_cols=100 Identities=18% Similarity=0.184 Sum_probs=63.1
Q ss_pred eEEEEECC---CC-CEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 023642 127 AYVSQFSA---DG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (279)
Q Consensus 127 V~~~~~sp---d~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~ 202 (279)
|+++++.. || +.|+.|+.|..||+|+-+. .+... .....|+.+.-... ..++.+..+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei----~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAEI----TETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEEE----ecccceEEEEEcCC-CEEEEEecCCEEEEEeCccee
Confidence 56676654 33 5899999999999998553 33321 22335787777665 668899999999999764332
Q ss_pred eeeeeccccccceeEEeeCCCCCccccEEEEEEec-C--C-CEEEEecCCCeEE
Q 023642 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-D--G-RELVAGSSDDCIY 252 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~--g-~~l~t~s~d~~i~ 252 (279)
.... ....+.++.+.. + | +.|++|-.+|.|-
T Consensus 75 WRiK-------------------SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIK-------------------SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeec-------------------cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2111 111455555533 2 2 2577887777663
No 310
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.50 E-value=0.0079 Score=48.75 Aligned_cols=119 Identities=16% Similarity=0.040 Sum_probs=75.7
Q ss_pred eeeeecCCCCceeeCCCCCeEEEEECCCCCEEE-EEeCCCcEEEEEcCCC-e-EE--eeeeeccCCCcceEEEEECCCCC
Q 023642 108 LSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFV-AGFQASQIRIYDVERG-W-KI--QKDILAKSLRWTVTDTSLSPDQR 182 (279)
Q Consensus 108 ~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~-s~~~d~~i~iwd~~~~-~-~~--~~~~~~~~~~~~v~~~~~sp~~~ 182 (279)
+|++.+......+...-...+.++|+||++.|+ +-+..+.|..+++... . .. .....+....+..-.+++..+|+
T Consensus 117 v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~ 196 (246)
T PF08450_consen 117 VYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN 196 (246)
T ss_dssp EEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-
T ss_pred eEEECCCCeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC
Confidence 444544422233344456678999999999775 5677789999998632 2 11 12222233333478899999999
Q ss_pred EEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEe-cCCCEEE
Q 023642 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS-TDGRELV 243 (279)
Q Consensus 183 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~g~~l~ 243 (279)
+.++....+.|.++|.. |+......... ..+++++|. ++.+.|+
T Consensus 197 l~va~~~~~~I~~~~p~-G~~~~~i~~p~----------------~~~t~~~fgg~~~~~L~ 241 (246)
T PF08450_consen 197 LWVADWGGGRIVVFDPD-GKLLREIELPV----------------PRPTNCAFGGPDGKTLY 241 (246)
T ss_dssp EEEEEETTTEEEEEETT-SCEEEEEE-SS----------------SSEEEEEEESTTSSEEE
T ss_pred EEEEEcCCCEEEEECCC-ccEEEEEcCCC----------------CCEEEEEEECCCCCEEE
Confidence 98888889999999998 66544333210 168899994 5655444
No 311
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.0024 Score=55.80 Aligned_cols=123 Identities=14% Similarity=0.086 Sum_probs=79.7
Q ss_pred CCeEEEEECCCCCEEEEEeC-----------CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeE
Q 023642 125 SRAYVSQFSADGSLFVAGFQ-----------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i 193 (279)
..|.-+.|||..++|++=+. ...++|||+.+|...+.+......-..-.-..||-|++++|--..+ .|
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-si 328 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SI 328 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eE
Confidence 45788999999999998653 2489999999997666544322211111235799999999877664 68
Q ss_pred EEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-----CCeEEEEECCCCeEEEE
Q 023642 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----DDCIYVYDLEANKLSLR 264 (279)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-----d~~i~vwd~~~~~~~~~ 264 (279)
.||+...-........ .-..|....|+|.+..||--.. -..+.+-.+.+++.+.+
T Consensus 329 sIyEtpsf~lld~Ksl----------------ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt 388 (698)
T KOG2314|consen 329 SIYETPSFMLLDKKSL----------------KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRT 388 (698)
T ss_pred EEEecCceeeeccccc----------------CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeee
Confidence 9998876433211111 1125777888998888875332 23566666666554443
No 312
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.00039 Score=58.23 Aligned_cols=81 Identities=15% Similarity=0.073 Sum_probs=65.8
Q ss_pred ceeeCCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCC-EEEEEeCCCeEEE
Q 023642 118 WPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHI 195 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~i~i 195 (279)
..+.+|...|..++|||..+ ++..++.+++|+|.|+.+..++... ..+ ..+++++|.-|.. +|+.|...|.|.+
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy---~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY---IAY-NQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe---ecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence 35678888999999999776 7889999999999999998665542 233 4799999998765 5667778999999
Q ss_pred EECCCCc
Q 023642 196 VDVGSGT 202 (279)
Q Consensus 196 ~d~~~~~ 202 (279)
||++..+
T Consensus 263 yD~R~~~ 269 (463)
T KOG1645|consen 263 YDMRQPE 269 (463)
T ss_pred EEccCCC
Confidence 9998644
No 313
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.0045 Score=56.43 Aligned_cols=141 Identities=9% Similarity=0.026 Sum_probs=90.3
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCC-----CCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEE
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSAD-----GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD 174 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd-----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 174 (279)
.+.|+++.+..+.+.+... .....-++.+++++|| .+.+++|+.-| +.++.-.--... ....+....++|.+
T Consensus 89 CS~DGkv~I~sl~~~~~~~-~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk-~~v~l~~~eG~I~~ 165 (846)
T KOG2066|consen 89 CSDDGKVVIGSLFTDDEIT-QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK-DSVVLSEGEGPIHS 165 (846)
T ss_pred ecCCCcEEEeeccCCccce-eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc-cceeeecCccceEE
Confidence 3567777777666554332 2344578999999997 56889999888 777753311111 11134567789999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEE
Q 023642 175 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY 254 (279)
Q Consensus 175 ~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vw 254 (279)
+.| .|++||-++.+| |++||+.+++............ .+. --...+.|.++.+.+ . |+..+|+|.
T Consensus 166 i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~----R~e------~fpphl~W~~~~~LV-I-GW~d~v~i~ 230 (846)
T KOG2066|consen 166 IKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSV----RPE------LFPPHLHWQDEDRLV-I-GWGDSVKIC 230 (846)
T ss_pred EEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCC----Ccc------cCCCceEecCCCeEE-E-ecCCeEEEE
Confidence 999 578999999888 8999999887744333222110 010 022357787766544 3 344568888
Q ss_pred ECCC
Q 023642 255 DLEA 258 (279)
Q Consensus 255 d~~~ 258 (279)
.++.
T Consensus 231 ~I~~ 234 (846)
T KOG2066|consen 231 SIKK 234 (846)
T ss_pred EEec
Confidence 8873
No 314
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.47 E-value=0.0017 Score=58.98 Aligned_cols=123 Identities=16% Similarity=0.154 Sum_probs=87.7
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCC------------CEEEEEeCCC
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ------------RHLVYASMSP 191 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~------------~~l~~~~~d~ 191 (279)
...-.++.|+|.| ++|.|+. ..|.+-|..+-+.+.. ...|...|+.+.|.|-. -.||++...|
T Consensus 15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqs---ie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQS---IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cccccccccCccc-eEEEecC-ceEEEEehhhhhhhhc---cccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 3446778899876 5666665 5788999887765554 45677889999998742 2467777889
Q ss_pred eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEec---CC-CEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST---DG-RELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 192 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~g-~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
.|.+||...+..+..... |...+..++|-| +. ..|+.-....+|.+|+..+|+.+-+...
T Consensus 90 rIil~d~~~~s~~~~l~~----------------~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y 153 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLSH----------------SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY 153 (1062)
T ss_pred cEEEEEehhhhhhhhhcC----------------CCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc
Confidence 999999998776543321 344677777765 44 3455556678999999999987766653
No 315
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.43 E-value=0.0072 Score=52.30 Aligned_cols=111 Identities=16% Similarity=0.126 Sum_probs=75.5
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccce
Q 023642 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (279)
Q Consensus 136 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 215 (279)
+..++.++.++.+..||..+|+.+.... ... .... ..++..++.++.++.+..+|..+++.........
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~----~~~-~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~---- 309 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRD----ASS-YQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDELK---- 309 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeec----cCC-ccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEcccccc----
Confidence 4577778889999999999997665432 111 1112 2256788888899999999999987643211000
Q ss_pred eEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCc
Q 023642 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTV 270 (279)
Q Consensus 216 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~ 270 (279)
. ....+... .+..+++++.++.|+++|..+|+.+.+++.+..
T Consensus 310 ----------~-~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~ 351 (377)
T TIGR03300 310 ----------Y-RQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGS 351 (377)
T ss_pred ----------C-CccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC
Confidence 0 01111122 366888899999999999999999988886554
No 316
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.40 E-value=0.0047 Score=59.40 Aligned_cols=134 Identities=16% Similarity=0.169 Sum_probs=85.9
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCcEEEE----EcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 023642 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIY----DVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s~~~d~~i~iw----d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d 197 (279)
...+.|.++.+-++...++.+..+|.|.+. +......- ........|.+++||||+..|+....++++.+..
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E----~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE----IVGSVDSGILAASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE----EEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence 345789999999999999999999999999 55544221 1224455799999999999999999888887764
Q ss_pred CCCCceeeeecc-------------ccccceeEEeeCCCCC-------------------ccccEEEEEEecCCCEEEEe
Q 023642 198 VGSGTMESLANV-------------TEIHDGLDFSAADDGG-------------------YSFGIFSLKFSTDGRELVAG 245 (279)
Q Consensus 198 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~-------------------~~~~v~~~~~sp~g~~l~t~ 245 (279)
. +-....-... ..+...-.|.|...+. +...-..++|-.||.++|+.
T Consensus 149 ~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVs 227 (928)
T PF04762_consen 149 R-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVS 227 (928)
T ss_pred c-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEE
Confidence 2 2111110000 0000001122211110 11244678999999999986
Q ss_pred cC----C--CeEEEEECCCCeE
Q 023642 246 SS----D--DCIYVYDLEANKL 261 (279)
Q Consensus 246 s~----d--~~i~vwd~~~~~~ 261 (279)
+. + +.|+||+.. |..
T Consensus 228 s~~~~~~~~R~iRVy~Re-G~L 248 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYSRE-GEL 248 (928)
T ss_pred EEEcCCCceeEEEEECCC-ceE
Confidence 63 2 579999975 543
No 317
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.39 E-value=0.0036 Score=54.77 Aligned_cols=124 Identities=22% Similarity=0.275 Sum_probs=80.6
Q ss_pred CceeeCCCCCeEEEEECCCCCEEEEEe---CC-CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe-CCC
Q 023642 117 PWPVDQTTSRAYVSQFSADGSLFVAGF---QA-SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSP 191 (279)
Q Consensus 117 ~~~l~~h~~~V~~~~~spd~~~l~s~~---~d-~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~ 191 (279)
...+..-...+..-+|+|++..++.-. .. ..+.++|+.++..... . ...+.-...+|+|||+.|+.+. .|+
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i-~---~~~g~~~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI-L---NFNGNNGAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee-e---ccCCccCCccCCCCCCEEEEEECCCC
Confidence 344555667788889999999876542 22 4699999998854332 1 2333455678999999876544 455
Q ss_pred --eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-CC--eEEEEECCCCeE
Q 023642 192 --IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DD--CIYVYDLEANKL 261 (279)
Q Consensus 192 --~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-d~--~i~vwd~~~~~~ 261 (279)
.|+++|+.++....+.... +.-..-.|+|||++++..+. .| .|.+.|...+..
T Consensus 261 ~~~iy~~dl~~~~~~~Lt~~~-----------------gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 261 SPDIYLMDLDGKNLPRLTNGF-----------------GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred CccEEEEcCCCCcceecccCC-----------------ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence 4777888887743322111 12225678999999886653 34 577777776543
No 318
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.39 E-value=0.0018 Score=52.75 Aligned_cols=135 Identities=14% Similarity=0.240 Sum_probs=86.2
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-EEee-eeeccCCC------------cceEEEEECCCC--CEEEE
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQK-DILAKSLR------------WTVTDTSLSPDQ--RHLVY 186 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~-~~~~-~~~~~~~~------------~~v~~~~~sp~~--~~l~~ 186 (279)
-.+.|+++.|...|.+|++|...|+|.+|.-.... |..+ +..+++|. ..|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35779999999999999999999999999765431 2111 12233442 247778886654 34667
Q ss_pred EeCCCeEEEEECCCCceeeeec----------------------ccccccee-EEeeC----CCCCccccEEEEEEecCC
Q 023642 187 ASMSPIVHIVDVGSGTMESLAN----------------------VTEIHDGL-DFSAA----DDGGYSFGIFSLKFSTDG 239 (279)
Q Consensus 187 ~~~d~~i~i~d~~~~~~~~~~~----------------------~~~~~~~~-~~~~~----~~~~~~~~v~~~~~sp~g 239 (279)
...|++|++|.+.......+.. ..+..... ..... ....|...|.+++|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7789999999987653211100 00000000 01111 114588899999999998
Q ss_pred CEEEEecCCCeEEEEECCC
Q 023642 240 RELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 240 ~~l~t~s~d~~i~vwd~~~ 258 (279)
..++++ .|-.|-+|++.-
T Consensus 185 et~lSa-DdLrINLWnl~i 202 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEI 202 (460)
T ss_pred heeeec-cceeeeeccccc
Confidence 888765 467799998864
No 319
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.32 E-value=0.00076 Score=36.18 Aligned_cols=32 Identities=31% Similarity=0.333 Sum_probs=29.0
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 023642 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (279)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d 197 (279)
..|...|.++.|+|++.++++++.|+.+++||
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 46777899999999999999999999999996
No 320
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.29 E-value=0.041 Score=44.00 Aligned_cols=108 Identities=23% Similarity=0.297 Sum_probs=69.5
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCC-cc------eEEEEECCCCCEEEEEeCCCe-EEEEECCCCceeee
Q 023642 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR-WT------VTDTSLSPDQRHLVYASMSPI-VHIVDVGSGTMESL 206 (279)
Q Consensus 135 d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~------v~~~~~sp~~~~l~~~~~d~~-i~i~d~~~~~~~~~ 206 (279)
++..++.+..++.|..+|+.+|+.+.......... .. +..-....++ .++.++.++. +.+ |+.+++...
T Consensus 121 ~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w- 197 (238)
T PF13360_consen 121 DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLW- 197 (238)
T ss_dssp ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEE-
T ss_pred ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEE-
Confidence 47888889889999999999998776643311111 11 1222222344 7777777775 555 999998542
Q ss_pred eccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEE
Q 023642 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL 263 (279)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~ 263 (279)
..... .+.. ...+++..|+.++.++.|..||+++|+.+-
T Consensus 198 ~~~~~-----------------~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 198 SKPIS-----------------GIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EECSS------------------ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred EecCC-----------------CccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 21100 1222 134677788877789999999999998763
No 321
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.026 Score=52.12 Aligned_cols=150 Identities=15% Similarity=0.203 Sum_probs=99.0
Q ss_pred ceEeeeeecCCC---Ccee-----eC-----CCCCeEEEEECCCCCEEEEEeCCCcEEEEE--cCCCeEEeeeeeccCCC
Q 023642 105 CHMLSRYLPVNG---PWPV-----DQ-----TTSRAYVSQFSADGSLFVAGFQASQIRIYD--VERGWKIQKDILAKSLR 169 (279)
Q Consensus 105 ~~~~~~~~~~~~---~~~l-----~~-----h~~~V~~~~~spd~~~l~s~~~d~~i~iwd--~~~~~~~~~~~~~~~~~ 169 (279)
.+.+|++.+.++ |+++ .. -+.++.++++|.+-+.+|.|-.+|.|..+. +...+-. +.......+
T Consensus 93 llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs-r~~~~~~~~ 171 (933)
T KOG2114|consen 93 LLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS-RQDYSHRGK 171 (933)
T ss_pred EEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc-ceeeeccCC
Confidence 677888776422 3333 22 267899999999999999999999998884 2211111 212234556
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC
Q 023642 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (279)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~ 249 (279)
.+|+++++..++..++-......|.+|.+.+.. ..... ... |...++|.+|++....+++++ +.
T Consensus 172 ~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-p~~~~---------ld~-----~G~~lnCss~~~~t~qfIca~-~e 235 (933)
T KOG2114|consen 172 EPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-PSLKV---------LDN-----NGISLNCSSFSDGTYQFICAG-SE 235 (933)
T ss_pred CCceeeEEecCCceeEEEEecceeEEEEecCCC-cceee---------ecc-----CCccceeeecCCCCccEEEec-Cc
Confidence 799999999998874444445679999988443 11110 111 334788999987655455544 45
Q ss_pred eEEEEECCCCeEEEEEe-CCCcc
Q 023642 250 CIYVYDLEANKLSLRIL-AHTVN 271 (279)
Q Consensus 250 ~i~vwd~~~~~~~~~~~-~h~~~ 271 (279)
.+.+|+....++-..++ ||...
T Consensus 236 ~l~fY~sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 236 FLYFYDSDGRGPCFAFEVGEKKE 258 (933)
T ss_pred eEEEEcCCCcceeeeecCCCeEE
Confidence 69999998777777777 77643
No 322
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.24 E-value=7e-05 Score=66.12 Aligned_cols=121 Identities=15% Similarity=0.153 Sum_probs=83.8
Q ss_pred CceeeCCCCCeEEEEECC-CCCEEEEEe----CCCcEEEEEcCCCe--EEeeeeeccCCCcceEEEEECCCCCEEEEEeC
Q 023642 117 PWPVDQTTSRAYVSQFSA-DGSLFVAGF----QASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPDQRHLVYASM 189 (279)
Q Consensus 117 ~~~l~~h~~~V~~~~~sp-d~~~l~s~~----~d~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 189 (279)
.....+|....++++|++ |.+.||+|- .|..+.|||+.++- +........+......+++|-.+.+++.+|..
T Consensus 95 ~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~ 174 (783)
T KOG1008|consen 95 AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMT 174 (783)
T ss_pred ceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccc
Confidence 345778899999999999 778888873 46689999998772 22111111123334568888888899999999
Q ss_pred CCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEec-CCCEEEEecCCCeEEEEE
Q 023642 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 190 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~t~s~d~~i~vwd 255 (279)
.+.++++|++-....... + .+..+..+...| .+.++++-. |+.|.+||
T Consensus 175 sr~~~ifdlRqs~~~~~s-v----------------nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD 223 (783)
T KOG1008|consen 175 SRSVHIFDLRQSLDSVSS-V----------------NTKYVQGITVDPFSPNYFCSNS-DGDIAIWD 223 (783)
T ss_pred cchhhhhhhhhhhhhhhh-h----------------hhhhcccceecCCCCCceeccc-cCceeecc
Confidence 999999999832211100 0 122466677788 677887655 89999999
No 323
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.17 E-value=0.055 Score=47.48 Aligned_cols=117 Identities=25% Similarity=0.331 Sum_probs=73.0
Q ss_pred eEEEEECCCCCEEEEE-eCCC----cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCC----------
Q 023642 127 AYVSQFSADGSLFVAG-FQAS----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP---------- 191 (279)
Q Consensus 127 V~~~~~spd~~~l~s~-~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---------- 191 (279)
+....+||||++++.+ +..| .|+++|+.+++.+...+... ....+.|.+|++.|+....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~----~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP----KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE----ESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc----ccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 3467899999999765 3334 69999999997665432211 123399999999887766433
Q ss_pred -eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec---CC-CeEEEEECCCC
Q 023642 192 -IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS---SD-DCIYVYDLEAN 259 (279)
Q Consensus 192 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s---~d-~~i~vwd~~~~ 259 (279)
.|+.|.+.+...... +.|.... .......+..++|+++|+..+ .+ ..+++.|+..+
T Consensus 202 ~~v~~~~~gt~~~~d~---------lvfe~~~---~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDE---------LVFEEPD---EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEEEETTS-GGG-E---------EEEC-TT---CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred cEEEEEECCCChHhCe---------eEEeecC---CCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 377777776553211 1122221 111366788999999877432 23 46888898864
No 324
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0029 Score=56.17 Aligned_cols=90 Identities=17% Similarity=0.162 Sum_probs=65.8
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccE-EEEEEecCCCEEEEecCC
Q 023642 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGI-FSLKFSTDGRELVAGSSD 248 (279)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~sp~g~~l~t~s~d 248 (279)
..+.-+.|+|.-..||.+..+|.+.+..+.-.+. ..... +.-.+ .+++|.|||+.|+.|-.|
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRl-wtip~----------------p~~~v~~sL~W~~DGkllaVg~kd 83 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQRL-WTIPI----------------PGENVTASLCWRPDGKLLAVGFKD 83 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEecccee-EeccC----------------CCCccceeeeecCCCCEEEEEecC
Confidence 3578899999999999999999998887773222 21111 01134 499999999999999999
Q ss_pred CeEEEEECCCCeEEEEEe-CCCcceeEEE
Q 023642 249 DCIYVYDLEANKLSLRIL-AHTVNIALWI 276 (279)
Q Consensus 249 ~~i~vwd~~~~~~~~~~~-~h~~~v~~v~ 276 (279)
|+|++.|+.++..+.... .-..+|.+++
T Consensus 84 G~I~L~Dve~~~~l~~~~~s~e~~is~~~ 112 (665)
T KOG4640|consen 84 GTIRLHDVEKGGRLVSFLFSVETDISKGI 112 (665)
T ss_pred CeEEEEEccCCCceeccccccccchheee
Confidence 999999999988776632 2234444444
No 325
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.002 Score=54.09 Aligned_cols=92 Identities=22% Similarity=0.253 Sum_probs=66.5
Q ss_pred EEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCC-EEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCc
Q 023642 148 IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGY 226 (279)
Q Consensus 148 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (279)
+++.+..+-+... .+..+...|.+++|+|..+ ++..++.+.+|+|.|+++......... +
T Consensus 175 v~~l~~~~fkssq---~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a----------------~ 235 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ---ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA----------------Y 235 (463)
T ss_pred eEEeccCCcchhh---cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec----------------c
Confidence 4455444433322 2456777899999999887 678899999999999998766432221 1
Q ss_pred cccEEEEEEecCCC-EEEEecCCCeEEEEECCCC
Q 023642 227 SFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 227 ~~~v~~~~~sp~g~-~l~t~s~d~~i~vwd~~~~ 259 (279)
..+++++|.-|.. ++..|-..|.|.|||++..
T Consensus 236 -~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 236 -NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred -CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 3789999988755 5556667899999999853
No 326
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.12 E-value=0.0024 Score=37.07 Aligned_cols=32 Identities=16% Similarity=0.311 Sum_probs=29.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVE 154 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~ 154 (279)
....|.+++|+|...+||.|+.+|.|.+|.+.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 35679999999999999999999999999983
No 327
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.11 E-value=0.0035 Score=54.21 Aligned_cols=120 Identities=19% Similarity=0.154 Sum_probs=81.2
Q ss_pred CceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCC-----
Q 023642 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP----- 191 (279)
Q Consensus 117 ~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----- 191 (279)
...+..-.-++..+.|||.|.+|++.... .|.+|+-.....+... .|. .|..+.|+|.++||.+=+..+
T Consensus 25 ~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~----~~~-~V~~~~fSP~~kYL~tw~~~pi~~pe 98 (561)
T COG5354 25 HTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRF----RHP-DVKYLDFSPNEKYLVTWSREPIIEPE 98 (561)
T ss_pred cccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeee----ecC-CceecccCcccceeeeeccCCccChh
Confidence 33455577889999999999999988875 5889987766443331 233 599999999999999876433
Q ss_pred ----------eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEEC
Q 023642 192 ----------IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (279)
Q Consensus 192 ----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~ 256 (279)
.+.+||+.+|............ +.++ .-+.|+.+..+++-. ....++|+++
T Consensus 99 ~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~------------~~~W-p~~k~s~~D~y~ARv-v~~sl~i~e~ 159 (561)
T COG5354 99 IEISPFTSKNNVFVWDIASGMIVFSFNGISQP------------YLGW-PVLKFSIDDKYVARV-VGSSLYIHEI 159 (561)
T ss_pred hccCCccccCceeEEeccCceeEeeccccCCc------------cccc-ceeeeeecchhhhhh-ccCeEEEEec
Confidence 4999999999875433221110 0011 146777777776543 2345788886
No 328
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.0033 Score=59.11 Aligned_cols=70 Identities=13% Similarity=0.070 Sum_probs=55.5
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeee
Q 023642 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL 206 (279)
Q Consensus 135 d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~ 206 (279)
.+..++.|+..|.+...|....-+ .........++|++++|+.+|+.++.|-.+|.|.+||+..++....
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~--~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~ 167 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLG--PLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKV 167 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccc--hhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceee
Confidence 556788999999999998876422 1122334567999999999999999999999999999999876443
No 329
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.02 E-value=0.036 Score=47.96 Aligned_cols=109 Identities=15% Similarity=0.105 Sum_probs=72.7
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccc
Q 023642 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (279)
Q Consensus 135 d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 214 (279)
.+..++.++.++.|..+|..+|+.+.......... .... .++..++.++.++.+..+|..+|+.........
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~---~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--- 135 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLS---GGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS--- 135 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcc---cceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc---
Confidence 46688888899999999999997766532221111 1122 256788888899999999999998754322111
Q ss_pred eeEEeeCCCCCccccEEE-EEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 215 GLDFSAADDGGYSFGIFS-LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 215 ~~~~~~~~~~~~~~~v~~-~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
.+.+ ... .+..++.++.++.|+.||.++|+.+-++..
T Consensus 136 --------------~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 136 --------------EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSR 173 (377)
T ss_pred --------------eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence 1111 111 244666777889999999999987766653
No 330
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.031 Score=51.67 Aligned_cols=145 Identities=11% Similarity=0.098 Sum_probs=92.2
Q ss_pred eeCCCCC-eEEEEECCCCCEEEEEeCCCc-----EEEEEcCCC------eEEe--eeee--ccCCCcceEEEEECCCCCE
Q 023642 120 VDQTTSR-AYVSQFSADGSLFVAGFQASQ-----IRIYDVERG------WKIQ--KDIL--AKSLRWTVTDTSLSPDQRH 183 (279)
Q Consensus 120 l~~h~~~-V~~~~~spd~~~l~s~~~d~~-----i~iwd~~~~------~~~~--~~~~--~~~~~~~v~~~~~sp~~~~ 183 (279)
+..+... |..+....+..+|++-+.|+. |+|||++.- .++. .... ......++..++.+.+-+.
T Consensus 60 fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~ 139 (933)
T KOG2114|consen 60 FQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKT 139 (933)
T ss_pred heecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccE
Confidence 4555555 555555555578888777654 899998642 2331 1111 1123568899999999999
Q ss_pred EEEEeCCCeEEEEECC--CCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeE
Q 023642 184 LVYASMSPIVHIVDVG--SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (279)
Q Consensus 184 l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~ 261 (279)
+++|-.+|.|..+.=. ..+.. ...+... -..+|+.+++..+++-++....-..|.+|.+....+
T Consensus 140 Iv~Gf~nG~V~~~~GDi~RDrgs----------r~~~~~~----~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p 205 (933)
T KOG2114|consen 140 IVCGFTNGLVICYKGDILRDRGS----------RQDYSHR----GKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTP 205 (933)
T ss_pred EEEEecCcEEEEEcCcchhcccc----------ceeeecc----CCCCceeeEEecCCceeEEEEecceeEEEEecCCCc
Confidence 9999999999887321 11110 0111111 224899999998888744444456799999984443
Q ss_pred -EEEEeCCCcceeEEEee
Q 023642 262 -SLRILAHTVNIALWITC 278 (279)
Q Consensus 262 -~~~~~~h~~~v~~v~~~ 278 (279)
...+..|..+++|...+
T Consensus 206 ~~~~ld~~G~~lnCss~~ 223 (933)
T KOG2114|consen 206 SLKVLDNNGISLNCSSFS 223 (933)
T ss_pred ceeeeccCCccceeeecC
Confidence 45577888888887653
No 331
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.93 E-value=0.056 Score=49.36 Aligned_cols=124 Identities=15% Similarity=0.097 Sum_probs=73.9
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEE--CCCCCEEEEEeCCCeEEEEECCCCce
Q 023642 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL--SPDQRHLVYASMSPIVHIVDVGSGTM 203 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~l~~~~~d~~i~i~d~~~~~~ 203 (279)
...-+.-|.-++..+.-+...++.|||...+..... ..+ ...+.|.++.| .|+++.+++.+..+.|.+|-...-..
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~-~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYE-ESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEe-eee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 334444444444444444456899999998864332 112 44668999998 56899999999999999986532111
Q ss_pred eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
............+.+..... .+|.+..|.++|..++.++ +.++|+|-.
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~----h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTP----HPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred hcCCcccceeEEEEeecCCC----CCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 00000011112223333221 3789999999997766443 568888753
No 332
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.92 E-value=0.1 Score=43.17 Aligned_cols=60 Identities=17% Similarity=0.158 Sum_probs=41.6
Q ss_pred cceEEEEECCCCCEEEEEe-CCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC
Q 023642 170 WTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (279)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d 248 (279)
.++-+|++++++.+++..+ ..+.+.+||..++........ ..+..++-.+++ ++++.+..
T Consensus 217 ~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l------------------~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 217 GYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL------------------PDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred CceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc------------------CceeeeeecCCc-eEEeCCCc
Confidence 4678888888888776555 667899999999987544332 145667766666 66665543
No 333
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=96.79 E-value=0.078 Score=51.26 Aligned_cols=130 Identities=11% Similarity=0.175 Sum_probs=79.4
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-EEeeeeeccCCCcceEEEEECCCC-CEEEEEeCCCeEEEEEC-
Q 023642 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDV- 198 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~d~- 198 (279)
.....|..++|++|+..||.--.|. |.+|...... .++..+.+... ..+..+.|+|.. ..|.....++.+..++.
T Consensus 302 ~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 302 PEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred CCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence 4567899999999999999987664 9999988764 33333333332 235559999954 44666666565544432
Q ss_pred ---CCCce----------------eeeecc--ccccceeE-EeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEEC
Q 023642 199 ---GSGTM----------------ESLANV--TEIHDGLD-FSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (279)
Q Consensus 199 ---~~~~~----------------~~~~~~--~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~ 256 (279)
..+.. ..+..+ ...+..+. +.- .-...|.+++|++++..+++-..|+.|.+|..
T Consensus 380 ~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l----~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 380 WDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL----ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred EEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE----cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 21110 000000 00000000 000 02347999999999888888889998888885
Q ss_pred C
Q 023642 257 E 257 (279)
Q Consensus 257 ~ 257 (279)
.
T Consensus 456 ~ 456 (928)
T PF04762_consen 456 D 456 (928)
T ss_pred c
Confidence 4
No 334
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.77 E-value=0.039 Score=44.81 Aligned_cols=132 Identities=18% Similarity=0.256 Sum_probs=80.7
Q ss_pred EECCCCCEEEEEeCC-----CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC----------------
Q 023642 131 QFSADGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---------------- 189 (279)
Q Consensus 131 ~~spd~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---------------- 189 (279)
.|||||.+|...-+| |.|-|||.+.+ ..+.-.+..|.-....+.|.+||+.++.+..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchh
Confidence 599999999876443 68999999854 2333345667667889999999999887654
Q ss_pred --CCeEEEEECCCCceeeeecccc-----------------ccceeEEeeCCC-------------------------CC
Q 023642 190 --SPIVHIVDVGSGTMESLANVTE-----------------IHDGLDFSAADD-------------------------GG 225 (279)
Q Consensus 190 --d~~i~i~d~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~-------------------------~~ 225 (279)
...+-+.|..+|+.+....... ...++.|.+..+ -.
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~ 277 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAA 277 (366)
T ss_pred hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHH
Confidence 1245666766666532222110 011122222221 00
Q ss_pred ccccEEEEEEecCCCEEE-EecCCCeEEEEECCCCeEEEE
Q 023642 226 YSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLSLR 264 (279)
Q Consensus 226 ~~~~v~~~~~sp~g~~l~-t~s~d~~i~vwd~~~~~~~~~ 264 (279)
....|-+++.+-+..+++ |+=..+...+||.++|..+..
T Consensus 278 ~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 278 FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence 123455677765544444 444667899999999987654
No 335
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.77 E-value=0.039 Score=49.99 Aligned_cols=120 Identities=12% Similarity=0.106 Sum_probs=66.3
Q ss_pred ECCCCCEEEEE-eCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCC---------------eEEE
Q 023642 132 FSADGSLFVAG-FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP---------------IVHI 195 (279)
Q Consensus 132 ~spd~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---------------~i~i 195 (279)
++|||+.+... -..+.+.+.|.++.+....+.... ....++++|+|+++++.+.+. .+.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg----npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG----NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC----CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 56677765333 334677888888776555543322 346678999999987775211 2222
Q ss_pred EECCC-------Cce-------eeeecccc----ccceeEEeeCCCCCccccEEEEEEecCCCEEEEec-CCCeEEEEEC
Q 023642 196 VDVGS-------GTM-------ESLANVTE----IHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDL 256 (279)
Q Consensus 196 ~d~~~-------~~~-------~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s-~d~~i~vwd~ 256 (279)
++... |+. ........ ...-..+-+.+. ....+.++|||+++++++ .+.+|.|.|+
T Consensus 276 fni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGK-----sPHGV~vSPDGkylyVanklS~tVSVIDv 350 (635)
T PRK02888 276 FNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPK-----NPHGVNTSPDGKYFIANGKLSPTVTVIDV 350 (635)
T ss_pred EchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCC-----CccceEECCCCCEEEEeCCCCCcEEEEEC
Confidence 22221 100 00000000 000011122222 457789999999988665 5889999999
Q ss_pred CCCe
Q 023642 257 EANK 260 (279)
Q Consensus 257 ~~~~ 260 (279)
.+.+
T Consensus 351 ~k~k 354 (635)
T PRK02888 351 RKLD 354 (635)
T ss_pred hhhh
Confidence 8744
No 336
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.75 E-value=0.083 Score=42.37 Aligned_cols=110 Identities=18% Similarity=0.147 Sum_probs=78.4
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccce
Q 023642 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (279)
Q Consensus 136 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 215 (279)
..+++.|+..+.+.--|..+|......+. ...|.+-+.- -|.+++.|...|.+++.+..+|............
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il----g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v-- 95 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL----GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV-- 95 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh----CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhh--
Confidence 45678888889999999999977665332 2234433332 4778999999999999999999654332221110
Q ss_pred eEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 216 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
. ......+++..+..+++|+..+..|.++..++.+.+
T Consensus 96 -------------k-~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 96 -------------K-VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred -------------c-cceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 1 123446789999999999999999999988887764
No 337
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.72 E-value=0.056 Score=51.86 Aligned_cols=130 Identities=18% Similarity=0.113 Sum_probs=84.2
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~ 202 (279)
..+.|.++.|..+...++.+...|.|.+-|..+..... .......|.+++|+||+..++....++++.+.+.. -.
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei----vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~-f~ 141 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELEI----VGNVDNGISAASWSPDEELLALITGRQTLLFMTKD-FE 141 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccceee----eeeccCceEEEeecCCCcEEEEEeCCcEEEEEecc-cc
Confidence 34789999999999999999999999999888763321 23445579999999999999988888877665431 11
Q ss_pred e---eee----------eccccccceeEEeeCCCC-------------C---ccccEEEEEEecCCCEEEEec----CC-
Q 023642 203 M---ESL----------ANVTEIHDGLDFSAADDG-------------G---YSFGIFSLKFSTDGRELVAGS----SD- 248 (279)
Q Consensus 203 ~---~~~----------~~~~~~~~~~~~~~~~~~-------------~---~~~~v~~~~~sp~g~~l~t~s----~d- 248 (279)
. ..+ .....+...-.|.+...+ + ....=.+++|--||+++++.. .+
T Consensus 142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 142 PIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred chhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 1 011 111111111123322210 0 011124589999999998732 23
Q ss_pred CeEEEEECC
Q 023642 249 DCIYVYDLE 257 (279)
Q Consensus 249 ~~i~vwd~~ 257 (279)
+.|+|||..
T Consensus 222 RkirV~drE 230 (1265)
T KOG1920|consen 222 RKIRVYDRE 230 (1265)
T ss_pred eeEEEeccc
Confidence 789999986
No 338
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.70 E-value=0.0092 Score=34.63 Aligned_cols=35 Identities=14% Similarity=0.084 Sum_probs=30.2
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 023642 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (279)
Q Consensus 167 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~ 202 (279)
.....|..++|+|...+||.++.+|.|.+|.+ +++
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 33456999999999999999999999999999 444
No 339
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.66 E-value=0.13 Score=41.61 Aligned_cols=130 Identities=12% Similarity=0.165 Sum_probs=73.1
Q ss_pred eeeCCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 023642 119 PVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d 197 (279)
.+.+-...++.++|+|+.. ++++....+.|..++.. |+.+.+ +.+.+. +...++++..++.++++.-.++.+.+++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~-i~l~g~-~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRR-IPLDGF-GDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEE-EE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEE-EeCCCC-CCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 3556667799999999755 55667777888888864 666655 445553 3588999988887777766789999998
Q ss_pred CCCCce-eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 198 VGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 198 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
+..... ....... .+.+.-. ..++..+-.++|.|.++.|+.+-......++.+.
T Consensus 93 ~~~~~~~~~~~~~~----~~~l~~~--~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~ 147 (248)
T PF06977_consen 93 IDDDTTSLDRADVQ----KISLGFP--NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVN 147 (248)
T ss_dssp E----TT--EEEEE----EEE---S-----SS--EEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred Eeccccccchhhce----EEecccc--cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEc
Confidence 844221 1111100 0111111 1133468899999988877777665555555443
No 340
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.64 E-value=0.41 Score=42.00 Aligned_cols=51 Identities=10% Similarity=0.072 Sum_probs=39.2
Q ss_pred ccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCC-CcceeEEEee
Q 023642 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-TVNIALWITC 278 (279)
Q Consensus 228 ~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h-~~~v~~v~~~ 278 (279)
+++..+++||+|+++|.-..+|.+.+.+..-.+.+..+.-. ......+.+|
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WC 268 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWC 268 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEE
Confidence 46899999999999998888999999987766666666543 3455666666
No 341
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.61 E-value=0.1 Score=45.42 Aligned_cols=123 Identities=16% Similarity=0.219 Sum_probs=77.4
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEe----------------------------------------eeeec
Q 023642 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ----------------------------------------KDILA 165 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~----------------------------------------~~~~~ 165 (279)
.|+.+.|+++...|+.|...|.|.||.....+... .....
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47889999999999999999998888653221110 00111
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEec-----CC-
Q 023642 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DG- 239 (279)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-----~g- 239 (279)
....++|++++.| |=-++|.|..+|.+.|.|+++...+....... .+.. ......++++.|+. |+
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-----~~~~---~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-----SFLS---KSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG-------T----SS----EEEEEEEEEE-TTSSS
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccc-----cccc---cccccCeeEEEEEEEecCCCcc
Confidence 2335789999997 55699999999999999999888765433332 0000 01234677888863 33
Q ss_pred --CEEEEecCCCeEEEEECC
Q 023642 240 --RELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 240 --~~l~t~s~d~~i~vwd~~ 257 (279)
..|++|...|.+.+|.+.
T Consensus 154 SSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEE
T ss_pred cceEEEEEeCCCCEEEEEEe
Confidence 467788888999999875
No 342
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.58 E-value=0.0097 Score=51.07 Aligned_cols=108 Identities=19% Similarity=0.184 Sum_probs=64.9
Q ss_pred CCCCCEEEEEe---------CCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 023642 133 SADGSLFVAGF---------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (279)
Q Consensus 133 spd~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~ 203 (279)
|||+++++... ..+.+.+||+.+++.... ......+....|+|+|+.++... ++.|.+++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l----~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPL----TPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEES----S-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEEC----cCCccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 68888887743 235789999999855432 12245688999999999998876 46899999888865
Q ss_pred eeeeccccccceeEEeeCCC----CCccccEEEEEEecCCCEEEEecCC
Q 023642 204 ESLANVTEIHDGLDFSAADD----GGYSFGIFSLKFSTDGRELVAGSSD 248 (279)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~sp~g~~l~t~s~d 248 (279)
..+..-. ....+.+..+ .---..-..+-|||||++|+....|
T Consensus 76 ~~lT~dg---~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 76 TQLTTDG---EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp EESES-----TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred EEecccc---ceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 4443321 1111111111 0000122457899999999876543
No 343
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.56 E-value=0.11 Score=47.74 Aligned_cols=113 Identities=17% Similarity=0.156 Sum_probs=63.3
Q ss_pred CeEEEEECCCCCEEEEEeCC------------CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeE
Q 023642 126 RAYVSQFSADGSLFVAGFQA------------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i 193 (279)
..+.-.|+|||..|++.... +.+.+.+++.++... ...+.|..+.|||||..|+... ++.|
T Consensus 398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~------~~~g~Issl~wSpDG~RiA~i~-~g~v 470 (591)
T PRK13616 398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS------RVPGPISELQLSRDGVRAAMII-GGKV 470 (591)
T ss_pred CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh------ccCCCcCeEEECCCCCEEEEEE-CCEE
Confidence 37888999999988777543 223223333332110 2345799999999999988766 4677
Q ss_pred EE---EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC--eEEEEECC
Q 023642 194 HI---VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD--CIYVYDLE 257 (279)
Q Consensus 194 ~i---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~--~i~vwd~~ 257 (279)
.+ -....|. ..+..... +... -...+.++.|..++.++ .+..+. .+...++.
T Consensus 471 ~Va~Vvr~~~G~-~~l~~~~~------l~~~----l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vD 527 (591)
T PRK13616 471 YLAVVEQTEDGQ-YALTNPRE------VGPG----LGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLD 527 (591)
T ss_pred EEEEEEeCCCCc-eeecccEE------eecc----cCCccccceEecCCEEE-EEecCCCCceEEEecC
Confidence 66 4444454 22211100 1000 11135788999998855 444433 34444444
No 344
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=0.016 Score=54.71 Aligned_cols=70 Identities=16% Similarity=0.193 Sum_probs=52.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCe
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~ 192 (279)
-.++|++++|+.||++++.|-.+|.|.+||...++..+.+.........|..+.+..++..++++...|.
T Consensus 129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence 3689999999999999999999999999999998766654332222234555566666677778777775
No 345
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.39 E-value=0.19 Score=43.90 Aligned_cols=108 Identities=15% Similarity=0.066 Sum_probs=70.9
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccce
Q 023642 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (279)
Q Consensus 136 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 215 (279)
+..++.++.++.+..+|..+|+.+.+... . ....+. ..+..|+.++.++.+..+|..+|+..........
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~----~-~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~--- 325 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREY----G-SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH--- 325 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecC----C-CccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCC---
Confidence 45667777889999999999976654321 1 111122 2466788888999999999999876432111000
Q ss_pred eEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 216 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
....+... .+..|+.++.++.|+..|..+|+.+.+.+-
T Consensus 326 ------------~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 326 ------------RLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred ------------CcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 01111122 255777888999999999999998877764
No 346
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.34 E-value=0.06 Score=49.34 Aligned_cols=115 Identities=13% Similarity=0.046 Sum_probs=64.3
Q ss_pred CCCeEEEEECCCCCEEEEEe------CCC--cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC-CeEE
Q 023642 124 TSRAYVSQFSADGSLFVAGF------QAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-PIVH 194 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~------~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~i~ 194 (279)
...+...++||||+.++... .|. .|.+++.... . ... ..+. ..+.-.|+|||..|++.... ..++
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~-~~l--t~g~--~~t~PsWspDG~~lw~v~dg~~~~~ 422 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-A-VQV--LEGH--SLTRPSWSLDADAVWVVVDGNTVVR 422 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-c-eee--ecCC--CCCCceECCCCCceEEEecCcceEE
Confidence 34678999999999887665 244 4555554222 2 221 1222 37888999999988777533 2333
Q ss_pred EEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEE
Q 023642 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYV 253 (279)
Q Consensus 195 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~v 253 (279)
+.+................... ...+.|..+.|||||..++... ++.|++
T Consensus 423 v~~~~~~gql~~~~vd~ge~~~--------~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 423 VIRDPATGQLARTPVDASAVAS--------RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred EeccCCCceEEEEeccCchhhh--------ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 3332221111111110000000 0123799999999999888655 466766
No 347
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.32 E-value=0.42 Score=42.90 Aligned_cols=123 Identities=12% Similarity=0.109 Sum_probs=73.4
Q ss_pred eeCCCCCeEEEEECCC----CCEEEEEeCCCcEEEEEcCC-----CeE-Eeeeeecc-CCCcceEEEEECCCCCEEEEEe
Q 023642 120 VDQTTSRAYVSQFSAD----GSLFVAGFQASQIRIYDVER-----GWK-IQKDILAK-SLRWTVTDTSLSPDQRHLVYAS 188 (279)
Q Consensus 120 l~~h~~~V~~~~~spd----~~~l~s~~~d~~i~iwd~~~-----~~~-~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 188 (279)
+-|....|..+.|.|- ...|.+.-....|.+|-+-. ++. ........ ...---..+.|||....|+.-.
T Consensus 52 viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT 131 (671)
T PF15390_consen 52 VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLT 131 (671)
T ss_pred EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEe
Confidence 4566788999999994 32444445558999998752 111 11111111 1111234678999988887766
Q ss_pred CCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-CCeEEEEECC
Q 023642 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLE 257 (279)
Q Consensus 189 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-d~~i~vwd~~ 257 (279)
....--+++++........ ++. ..+.|.|.+|.+||+.|+.+-. .=.-++||-.
T Consensus 132 ~~dvSV~~sV~~d~srVka---------Di~------~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSSRVKA---------DIK------TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cCceeEeeeeeeCCceEEE---------ecc------CCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 5555455566543322111 111 2347999999999998876543 3357889864
No 348
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.30 E-value=0.18 Score=47.38 Aligned_cols=101 Identities=12% Similarity=0.091 Sum_probs=64.1
Q ss_pred EEEEEeCCCcEEEEEcCCC-eE-EeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccce
Q 023642 138 LFVAGFQASQIRIYDVERG-WK-IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (279)
Q Consensus 138 ~l~s~~~d~~i~iwd~~~~-~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 215 (279)
.-+.|-.++.|..||.+-. .+ +..............+++-+.+| +||.|+.+|.||+||-.+ .. ...
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g-~~--AKT------- 612 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG-KR--AKT------- 612 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccc-hh--hhh-------
Confidence 4566777889999998753 22 21111111222346666666555 789999999999999433 21 111
Q ss_pred eEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEEC
Q 023642 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (279)
Q Consensus 216 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~ 256 (279)
.+.+-+ .+|..|..+.||+|++..+ +..+.+++.
T Consensus 613 -~lp~lG-----~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 613 -ALPGLG-----DPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred -cCCCCC-----CCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 111222 3899999999999987655 566777775
No 349
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.20 E-value=0.088 Score=50.62 Aligned_cols=115 Identities=12% Similarity=0.152 Sum_probs=72.9
Q ss_pred eEEEEECCCCCEEEEEe----CC-CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe---CCCeEEEEEC
Q 023642 127 AYVSQFSADGSLFVAGF----QA-SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS---MSPIVHIVDV 198 (279)
Q Consensus 127 V~~~~~spd~~~l~s~~----~d-~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---~d~~i~i~d~ 198 (279)
=.++.|--||.++|+.. .+ .+|++||.+ |..-.. .....+.=.+++|-|.|..+++-. .|..|.+|.-
T Consensus 198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~---se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr 273 (1265)
T KOG1920|consen 198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNST---SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER 273 (1265)
T ss_pred CceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcc---cCcccccccceeecCCCCeEeeeeecCCCCcEEEEec
Confidence 35589999999998842 23 799999987 422111 112222346789999999998754 3456888875
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEE---ecCCCeEEEEECCC
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA---GSSDDCIYVYDLEA 258 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t---~s~d~~i~vwd~~~ 258 (279)
.+-+.-.. ...... ....+..++|+.++..|++ ......|.+|-+..
T Consensus 274 NGL~hg~f-~l~~p~------------de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 274 NGLRHGEF-VLPFPL------------DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred CCcccccc-ccCCcc------------cccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 54332111 111110 1114889999999999987 44455699998765
No 350
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.6 Score=40.57 Aligned_cols=123 Identities=11% Similarity=0.152 Sum_probs=82.7
Q ss_pred CeEEEEECCCCCEEEEEeC---CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe-CCCeEEEEECCCC
Q 023642 126 RAYVSQFSADGSLFVAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSG 201 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~ 201 (279)
.-..++++|++..+..+.. ++++.+.|..+........ .+. .+ ..+++.|+|..++... .++.+.+.|..+.
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~--vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~ 192 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP--VGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN 192 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe--cCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc
Confidence 5677899999988766654 6889999988887666522 221 23 8899999999766655 7889999997765
Q ss_pred ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC---CeEEEEECCCCeEEEE
Q 023642 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLR 264 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d---~~i~vwd~~~~~~~~~ 264 (279)
.... ...... .. --.....+.++|+|.++...... +.+...|..++.....
T Consensus 193 ~v~~-~~~~~~------~~-----~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 193 SVVR-GSVGSL------VG-----VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred ceec-cccccc------cc-----cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 5432 110000 00 00134568899999976654433 5899999988776654
No 351
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.16 E-value=0.0034 Score=55.89 Aligned_cols=140 Identities=16% Similarity=0.176 Sum_probs=87.5
Q ss_pred cccceEeeeeecC-----CCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEE
Q 023642 102 ADCCHMLSRYLPV-----NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS 176 (279)
Q Consensus 102 ~d~~~~~~~~~~~-----~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 176 (279)
.|.++.+|++-.. +.+....+-.....+++|-.+.+++.+|.....+.++|++........+ .+..+..+.
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv----nTk~vqG~t 202 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV----NTKYVQGIT 202 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh----hhhhcccce
Confidence 4556777876543 1222222355667789999999999999998999999998542111111 122466678
Q ss_pred ECC-CCCEEEEEeCCCeEEEEEC-CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCC-EEEEecCC-CeEE
Q 023642 177 LSP-DQRHLVYASMSPIVHIVDV-GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSD-DCIY 252 (279)
Q Consensus 177 ~sp-~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~t~s~d-~~i~ 252 (279)
..| .+.++++-+ |+.|.+||. ++-+. .+....... +.....+..++|.|..+ .+++.+.| ++|+
T Consensus 203 Vdp~~~nY~cs~~-dg~iAiwD~~rnien-pl~~i~~~~----------N~~~~~l~~~aycPtrtglla~l~RdS~tIr 270 (783)
T KOG1008|consen 203 VDPFSPNYFCSNS-DGDIAIWDTYRNIEN-PLQIILRNE----------NKKPKQLFALAYCPTRTGLLAVLSRDSITIR 270 (783)
T ss_pred ecCCCCCceeccc-cCceeeccchhhhcc-HHHHHhhCC----------CCcccceeeEEeccCCcchhhhhccCcceEE
Confidence 888 777887766 899999994 33322 111111110 01223688999999633 45566654 5899
Q ss_pred EEECC
Q 023642 253 VYDLE 257 (279)
Q Consensus 253 vwd~~ 257 (279)
.+|+.
T Consensus 271 lydi~ 275 (783)
T KOG1008|consen 271 LYDIC 275 (783)
T ss_pred Eeccc
Confidence 99985
No 352
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.00 E-value=0.032 Score=43.72 Aligned_cols=106 Identities=7% Similarity=0.008 Sum_probs=63.8
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccce
Q 023642 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (279)
Q Consensus 136 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 215 (279)
+..++.|+.+|.|.+|....--...... ......-...+.--.++.+.+++..|+.|+.|++.-.+.......
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~-~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~------ 142 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRV-CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ------ 142 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhh-hcccccceeccccccccceeEEeccCCceeeeccccCceeeeecc------
Confidence 4678899999999999876221111100 011111112222223556788999999999999987776443211
Q ss_pred eEEeeCCCCCcc-ccEEEEEEecCCCEEEEe--cCCCeEEEEECCC
Q 023642 216 LDFSAADDGGYS-FGIFSLKFSTDGRELVAG--SSDDCIYVYDLEA 258 (279)
Q Consensus 216 ~~~~~~~~~~~~-~~v~~~~~sp~g~~l~t~--s~d~~i~vwd~~~ 258 (279)
|. ........+..+++++.+ |.|..++.|++..
T Consensus 143 ----------h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 143 ----------HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ----------ccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 22 244445555566777777 7788888888754
No 353
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=95.92 E-value=0.036 Score=51.62 Aligned_cols=108 Identities=19% Similarity=0.148 Sum_probs=73.4
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccc
Q 023642 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (279)
Q Consensus 135 d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 214 (279)
++..++.|+--..+..+|+.+.+..+.. ..... .|+- +..+++++.+|...|+|.+-|..+.+.+....
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~-~v~a~--~v~i--mR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~------ 214 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTT-NVSAS--GVTI--MRYNNRNLFCGDTRGTVFLRDPNSFETIHTFD------ 214 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeee-eccCC--ceEE--EEecCcEEEeecccceEEeecCCcCceeeeee------
Confidence 4456777777778889999987554431 11111 2333 33478899999999999999999887654332
Q ss_pred eeEEeeCCCCCccccEEEEEEecCCCEEEEecC---------CCeEEEEECCCCeEEEEE
Q 023642 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---------DDCIYVYDLEANKLSLRI 265 (279)
Q Consensus 215 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~---------d~~i~vwd~~~~~~~~~~ 265 (279)
. |++.|.++. -.|+.|++++. |..|+|||++.-+.+.-+
T Consensus 215 -----a-----Hs~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI 262 (1118)
T KOG1275|consen 215 -----A-----HSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI 262 (1118)
T ss_pred -----c-----cccceeeee--ccCCeEEEeecccccccccccchhhhhhhhhhhccCCc
Confidence 2 666886654 45889998874 456899999875544333
No 354
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.80 E-value=0.39 Score=33.41 Aligned_cols=65 Identities=17% Similarity=0.048 Sum_probs=40.8
Q ss_pred eEEEEECC---CC-CEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC
Q 023642 172 VTDTSLSP---DQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (279)
Q Consensus 172 v~~~~~sp---~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~ 247 (279)
|+++++.. || +.|+.|+.|..|++|+-..-.. -.. -...|.+++-... ..++.+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~~--Ei~-----------------e~~~v~~L~~~~~-~~F~Y~l~ 61 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIVA--EIT-----------------ETDKVTSLCSLGG-GRFAYALA 61 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEEE--EEe-----------------cccceEEEEEcCC-CEEEEEec
Confidence 55666554 33 5799999999999997653221 111 1126777776655 45677777
Q ss_pred CCeEEEEEC
Q 023642 248 DDCIYVYDL 256 (279)
Q Consensus 248 d~~i~vwd~ 256 (279)
+|+|-+|+-
T Consensus 62 NGTVGvY~~ 70 (111)
T PF14783_consen 62 NGTVGVYDR 70 (111)
T ss_pred CCEEEEEeC
Confidence 777666654
No 355
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.74 E-value=0.39 Score=42.46 Aligned_cols=121 Identities=19% Similarity=0.158 Sum_probs=56.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEE-CCCC
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD-VGSG 201 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d-~~~~ 201 (279)
..-....+.++|+|++++. ..||.-.|+......... .+.-....|.++++ +|+-....+|.|+. ..+.
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~--------~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA--------FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE--------EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc--------cCceeEEEEecCcc-EEEEECCCeEEEEEcCccc
Confidence 3445677888998888877 445777777744332211 11345567777444 55555567777752 2211
Q ss_pred ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
....+ ... ..+..+-. |..|...+.+ .|.+||+.+++.+.++... +|..|++
T Consensus 101 ~~k~i-~~~-----------------~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~W 152 (443)
T PF04053_consen 101 VVKSI-KLP-----------------FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIW 152 (443)
T ss_dssp TT------S-----------------S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE
T ss_pred cceEE-cCC-----------------cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEE
Confidence 10001 000 01222211 6666655543 6888888888887777643 2555554
No 356
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.72 E-value=0.04 Score=49.83 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=61.9
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeee---ccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 023642 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL---AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~ 198 (279)
+-.+.+..+.+|++..++|.|+..|.|.++-+..+.+...... -..|...|++++|++++..+++|...|+|.+-.+
T Consensus 74 ~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L 153 (726)
T KOG3621|consen 74 GATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTEL 153 (726)
T ss_pred CccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEe
Confidence 3556677788999999999999999999998876533222111 2346778999999999999999999999888776
Q ss_pred CC
Q 023642 199 GS 200 (279)
Q Consensus 199 ~~ 200 (279)
..
T Consensus 154 ~s 155 (726)
T KOG3621|consen 154 DS 155 (726)
T ss_pred ch
Confidence 65
No 357
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.61 E-value=0.83 Score=39.71 Aligned_cols=115 Identities=14% Similarity=0.202 Sum_probs=80.5
Q ss_pred eEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC---CCeEEEEECCCCc
Q 023642 127 AYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVGSGT 202 (279)
Q Consensus 127 V~~~~~spd~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~i~i~d~~~~~ 202 (279)
-..+++++++..+ +....++.|.+.|..+......... +. ....++++|++..+..+.. ++++.+.|..+..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v--G~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV--GL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee--cc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence 3567888888855 4455568999999877655554322 22 5778999999988776665 6889999998887
Q ss_pred eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec-CCCeEEEEECCCCeEE
Q 023642 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLS 262 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s-~d~~i~vwd~~~~~~~ 262 (279)
......... .+ ..++++|+|..++... .++.|.+.|..+....
T Consensus 152 ~~~~~~vG~----------------~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 152 VTATIPVGN----------------TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred EEEEEecCC----------------Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence 654321110 13 7899999999666554 6889999997655444
No 358
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.60 E-value=0.59 Score=38.10 Aligned_cols=112 Identities=21% Similarity=0.168 Sum_probs=68.7
Q ss_pred CeEEEEECCCCCEEEEEe---CCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEE-CCCC
Q 023642 126 RAYVSQFSADGSLFVAGF---QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD-VGSG 201 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d-~~~~ 201 (279)
.+.+.++++|++.++... ....+.++..... .... ..+ ..+....|++++...+....+...+++. ...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~--~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPV--LTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceee--ccC--CccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence 688999999999887655 2334555554433 2221 122 2688889999988877777677667763 3344
Q ss_pred ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec---CCCeEEEEEC
Q 023642 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS---SDDCIYVYDL 256 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s---~d~~i~vwd~ 256 (279)
......-. ... -...|..+.+||||..++.-. .++.|.+--+
T Consensus 99 ~~~~~~v~--------~~~-----~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 99 TGEPVEVD--------WPG-----LRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred cceeEEec--------ccc-----cCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 33211110 000 011799999999999887644 3466776654
No 359
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.58 E-value=0.032 Score=51.70 Aligned_cols=72 Identities=10% Similarity=0.062 Sum_probs=60.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECC
Q 023642 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~ 199 (279)
-.+++++|+|..-.|+.|=.-|.+.+|...+.+.-. ....|..+|..+.|||+|..+.++..=|.+.+|.+.
T Consensus 60 ~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 60 VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eehhhhccChHHHHHhhccccceeEEEecCCceeee---eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 445779999998889999888999999987664322 245788999999999999999999999999999764
No 360
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.45 E-value=1 Score=37.80 Aligned_cols=136 Identities=16% Similarity=0.126 Sum_probs=77.2
Q ss_pred CCeEEEEECCCCCEEEEEeC-----C----CcEEEEEcC-CCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC-CCeE
Q 023642 125 SRAYVSQFSADGSLFVAGFQ-----A----SQIRIYDVE-RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIV 193 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~-----d----~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~i 193 (279)
...+.+.+.|+|.+.++... . ..=.+|-++ .+..... ...+-..-..++||||++.++.+.. .+.|
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l---~~~~~~~~NGla~SpDg~tly~aDT~~~~i 187 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL---LDDDLTIPNGLAFSPDGKTLYVADTPANRI 187 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEe---ecCcEEecCceEECCCCCEEEEEeCCCCeE
Confidence 45677889999997776544 1 112344444 3433322 2333334578999999988776654 4778
Q ss_pred EEEECCC--CceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC-eEEEEECCCCeEEEEEeCCCc
Q 023642 194 HIVDVGS--GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-CIYVYDLEANKLSLRILAHTV 270 (279)
Q Consensus 194 ~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~-~i~vwd~~~~~~~~~~~~h~~ 270 (279)
.-|++.. +..... ....+... ..+..-.++...+|.+.+.+..++ .|.+|+.. |+.+..+.-...
T Consensus 188 ~r~~~d~~~g~~~~~-------~~~~~~~~----~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~ 255 (307)
T COG3386 188 HRYDLDPATGPIGGR-------RGFVDFDE----EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVK 255 (307)
T ss_pred EEEecCcccCccCCc-------ceEEEccC----CCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCC
Confidence 8887753 221100 00001000 112444566677777765444443 78888887 888888876644
Q ss_pred ceeEE
Q 023642 271 NIALW 275 (279)
Q Consensus 271 ~v~~v 275 (279)
.+.++
T Consensus 256 ~~t~~ 260 (307)
T COG3386 256 RPTNP 260 (307)
T ss_pred CCccc
Confidence 44443
No 361
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.43 E-value=0.1 Score=29.42 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=25.2
Q ss_pred cEEEEEEecCC---CEEEEecCCCeEEEEECCC
Q 023642 229 GIFSLKFSTDG---RELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 229 ~v~~~~~sp~g---~~l~t~s~d~~i~vwd~~~ 258 (279)
.+.+++|+|.. .+|+.+-.-+.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 68999999854 4888877788999999995
No 362
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.43 E-value=0.4 Score=40.20 Aligned_cols=99 Identities=19% Similarity=0.108 Sum_probs=60.1
Q ss_pred eeeeecCCC-CceeeCCCCCeEEEEECCCCCEEEEE-eCCCcEEEEEcCC--CeEE--eeeeeccCCCcceEEEEECCCC
Q 023642 108 LSRYLPVNG-PWPVDQTTSRAYVSQFSADGSLFVAG-FQASQIRIYDVER--GWKI--QKDILAKSLRWTVTDTSLSPDQ 181 (279)
Q Consensus 108 ~~~~~~~~~-~~~l~~h~~~V~~~~~spd~~~l~s~-~~d~~i~iwd~~~--~~~~--~~~~~~~~~~~~v~~~~~sp~~ 181 (279)
+|++.+... ...+..+-..-+.++||||++.|..+ +..+.|.-|+++. +... .....+....+..=.++...+|
T Consensus 145 lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG 224 (307)
T COG3386 145 LYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG 224 (307)
T ss_pred EEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC
Confidence 555554322 23345556667889999999887766 4457888888763 2111 1112222334455567777778
Q ss_pred CEEEEEeCCC-eEEEEECCCCceeeee
Q 023642 182 RHLVYASMSP-IVHIVDVGSGTMESLA 207 (279)
Q Consensus 182 ~~l~~~~~d~-~i~i~d~~~~~~~~~~ 207 (279)
.+.+++..+| .|.+|+.. ++.....
T Consensus 225 ~lw~~a~~~g~~v~~~~pd-G~l~~~i 250 (307)
T COG3386 225 NLWVAAVWGGGRVVRFNPD-GKLLGEI 250 (307)
T ss_pred CEEEecccCCceEEEECCC-CcEEEEE
Confidence 8776555554 89999888 6654433
No 363
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.39 E-value=0.023 Score=52.80 Aligned_cols=87 Identities=20% Similarity=0.163 Sum_probs=68.2
Q ss_pred ccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEE
Q 023642 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (279)
Q Consensus 165 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t 244 (279)
++.|....++++|+-+.++|+.|+..|.|++|++.+|...... ++|.+.|+-+.-+-||..+++
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~----------------ncH~SavT~vePs~dgs~~Lt 1160 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV----------------NCHQSAVTLVEPSVDGSTQLT 1160 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc----------------cccccccccccccCCcceeee
Confidence 5677888999999999999999999999999999998864322 137779999998989998877
Q ss_pred ecCCC--eEEEEECCC-CeEEEEEeC
Q 023642 245 GSSDD--CIYVYDLEA-NKLSLRILA 267 (279)
Q Consensus 245 ~s~d~--~i~vwd~~~-~~~~~~~~~ 267 (279)
.+.-. ...+|++.+ +.+.+++.+
T Consensus 1161 sss~S~PlsaLW~~~s~~~~~Hsf~e 1186 (1516)
T KOG1832|consen 1161 SSSSSSPLSALWDASSTGGPRHSFDE 1186 (1516)
T ss_pred eccccCchHHHhccccccCccccccc
Confidence 65432 577999864 556666553
No 364
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.33 E-value=0.42 Score=40.39 Aligned_cols=115 Identities=12% Similarity=0.196 Sum_probs=70.8
Q ss_pred eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-EEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECC
Q 023642 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (279)
Q Consensus 121 ~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~ 199 (279)
....++|++++-- ++. |+.+.. +.|.+|++...+ ...... . .....+.++... +++|+.|..-..+.++...
T Consensus 85 ~~~~g~V~ai~~~-~~~-lv~~~g-~~l~v~~l~~~~~l~~~~~-~-~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 85 TEVKGPVTAICSF-NGR-LVVAVG-NKLYVYDLDNSKTLLKKAF-Y-DSPFYITSLSVF--KNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEESS-EEEEEEE-TTE-EEEEET-TEEEEEEEETTSSEEEEEE-E--BSSSEEEEEEE--TTEEEEEESSSSEEEEEEE
T ss_pred EeecCcceEhhhh-CCE-EEEeec-CEEEEEEccCcccchhhhe-e-cceEEEEEEecc--ccEEEEEEcccCEEEEEEE
Confidence 3457889998755 344 544443 799999998876 333321 1 222246665554 5699999988878877443
Q ss_pred C--CceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 200 S--GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 200 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
. .+...+.+- . ...+++++.|-+++..++.+..++.+.++...
T Consensus 158 ~~~~~l~~va~d-~--------------~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 158 EENNKLILVARD-Y--------------QPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp TTTE-EEEEEEE-S--------------S-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ccCCEEEEEEec-C--------------CCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 3 222211110 0 22378999998777788899999999999876
No 365
>PRK10115 protease 2; Provisional
Probab=95.21 E-value=2.7 Score=39.64 Aligned_cols=72 Identities=13% Similarity=0.086 Sum_probs=48.3
Q ss_pred CCeEEEEECCCCCEEEEEeC-----CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC------CeE
Q 023642 125 SRAYVSQFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS------PIV 193 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------~~i 193 (279)
-.+..+.||||+++|+.+.. .-.|++.|+.+|..+...+ .. .-..++|.+|++.|+....+ ..|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--DN---VEPSFVWANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--cC---cceEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence 34667889999998876633 2368899998885333211 11 11458999999877765532 357
Q ss_pred EEEECCCC
Q 023642 194 HIVDVGSG 201 (279)
Q Consensus 194 ~i~d~~~~ 201 (279)
+.+++.++
T Consensus 202 ~~h~lgt~ 209 (686)
T PRK10115 202 WRHTIGTP 209 (686)
T ss_pred EEEECCCC
Confidence 77888776
No 366
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.20 E-value=1 Score=37.06 Aligned_cols=130 Identities=10% Similarity=0.091 Sum_probs=83.3
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECC
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~ 199 (279)
+.+-...|.++.|+|+.+.|++..+...-.||=...|+.+... .+.+.. ....+.+.-++++.++-=.+..+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti-PL~g~~-DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI-PLTGFS-DPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe-cccccC-ChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 4556677999999999999988887777777776778777654 334433 36678888888888887788889988877
Q ss_pred CCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
........... .+.+... .+ .+..--.++|.|....|..+=+-.-+.||.+.
T Consensus 159 ~~t~~~~~~~~----~i~L~~~-~k-~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 159 ADTTVISAKVQ----KIPLGTT-NK-KNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred CCccEEeccce----EEecccc-CC-CCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 65432111111 0111111 10 12345678888887777766655545555443
No 367
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.19 E-value=0.1 Score=29.47 Aligned_cols=32 Identities=34% Similarity=0.388 Sum_probs=26.3
Q ss_pred cceEEEEECCCC---CEEEEEeCCCeEEEEECCCC
Q 023642 170 WTVTDTSLSPDQ---RHLVYASMSPIVHIVDVGSG 201 (279)
Q Consensus 170 ~~v~~~~~sp~~---~~l~~~~~d~~i~i~d~~~~ 201 (279)
+.|++++|+|.. .+|+.+-.-+.+.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 368999999854 48888888899999999963
No 368
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.19 E-value=0.71 Score=40.26 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=62.1
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccc
Q 023642 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (279)
Q Consensus 135 d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 214 (279)
++..++.++.++.+..+|..+|+.+....... . ....+... .+..|+.++.+|.+.++|..+|+.........
T Consensus 293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~--- 365 (394)
T PRK11138 293 DGGRIYLVDQNDRVYALDTRGGVELWSQSDLL-H-RLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDS--- 365 (394)
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEcccccC-C-CcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC---
Confidence 35567777889999999999987655421111 1 11111122 25677888999999999999998754332210
Q ss_pred eeEEeeCCCCCccccEE-EEEEecCCCEEEEecCCCeEEEEEC
Q 023642 215 GLDFSAADDGGYSFGIF-SLKFSTDGRELVAGSSDDCIYVYDL 256 (279)
Q Consensus 215 ~~~~~~~~~~~~~~~v~-~~~~sp~g~~l~t~s~d~~i~vwd~ 256 (279)
..+. ...+ .+..|+.++.||.|+.++.
T Consensus 366 -------------~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 366 -------------SGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred -------------CcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 0111 1122 2447778899999988765
No 369
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.17 E-value=1.4 Score=36.81 Aligned_cols=113 Identities=15% Similarity=0.217 Sum_probs=59.3
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-eEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~ 198 (279)
...-.+.+..+.-++||++++++..-....-||.-.. ...+. +.....|..+.|.|++.+.+.+ ..+.++.=+.
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~----r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~ 214 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN----RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD 214 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc----cCccceehhceecCCCCEEEEe-CCcEEEEccC
Confidence 3445578899999999999988877666667875532 33332 3345579999999998876654 7788888762
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d 248 (279)
..... ......... . .....+..++|.+++...++|+..
T Consensus 215 ~~~~~-~w~~~~~~~--------~--~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 215 PDDGE-TWSEPIIPI--------K--TNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp TTEEE-EE---B-TT--------S--S--S-EEEEEESSSS-EEEEESTT
T ss_pred CCCcc-ccccccCCc--------c--cCceeeEEEEecCCCCEEEEeCCc
Confidence 21111 111100000 0 011258999999998888776644
No 370
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.01 E-value=1.1 Score=36.46 Aligned_cols=134 Identities=10% Similarity=0.153 Sum_probs=72.2
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe------EEeeee--eccCCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW------KIQKDI--LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~------~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (279)
.+..-.+++..++.++++.-.++.+.++++.... ...... ....++..+..++|.|.++.|+.+-...-..|
T Consensus 64 ~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l 143 (248)
T PF06977_consen 64 FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRL 143 (248)
T ss_dssp -SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEE
T ss_pred CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhh
Confidence 4667888888888777776678999999884321 111111 11234556999999998877777766666667
Q ss_pred EECCC---CceeeeeccccccceeEEeeCCCCCccccEEEEEEecC-CCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 196 VDVGS---GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 196 ~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
|.+.. ............. . .......+.+++++|. +.+++.+..+..|..+| .+|+.+..+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~ 209 (248)
T PF06977_consen 144 YEVNGFPGGFDLFVSDDQDLD------D--DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLS 209 (248)
T ss_dssp EEEESTT-SS--EEEE-HHHH---------HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE
T ss_pred EEEccccCccceeeccccccc------c--ccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEE
Confidence 66654 1111111100000 0 0112336889999997 55666777788999999 5677776654
No 371
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.94 E-value=1.2 Score=35.37 Aligned_cols=142 Identities=13% Similarity=0.132 Sum_probs=80.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCC---------CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEE-EEEeCCCeE
Q 023642 124 TSRAYVSQFSADGSLFVAGFQA---------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMSPIV 193 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~i 193 (279)
..+.+.-..+|+|++++-.-.| +.++.|-+.-. +... .+.-+--..++|+.+.+.+ ++-+.+-.|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~--v~~i---~~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ--VELI---WNCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC--ceee---ehhccCCccccccccCcEEEEEccCceEE
Confidence 4556666789999996543222 34444443321 1111 1111123567888777655 455667788
Q ss_pred EEEE--CCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcc
Q 023642 194 HIVD--VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVN 271 (279)
Q Consensus 194 ~i~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~ 271 (279)
.-|| ..+|..............-.+.+- ..-.++...+|.+.++.-..++|...|..+|+.++.+.-....
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~-------~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~q 255 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESL-------EPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQ 255 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCC-------CCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCc
Confidence 7777 666664211111000000001000 1122344557888887777889999999999999999888888
Q ss_pred eeEEEe
Q 023642 272 IALWIT 277 (279)
Q Consensus 272 v~~v~~ 277 (279)
|+|++.
T Consensus 256 itsccF 261 (310)
T KOG4499|consen 256 ITSCCF 261 (310)
T ss_pred eEEEEe
Confidence 887753
No 372
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.94 E-value=0.54 Score=40.00 Aligned_cols=53 Identities=21% Similarity=0.259 Sum_probs=34.5
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeE---Eeee-eeccCCCcceEEEEECCC
Q 023642 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWK---IQKD-ILAKSLRWTVTDTSLSPD 180 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~---~~~~-~~~~~~~~~v~~~~~sp~ 180 (279)
.-.+|+|.|||++|++ ...|.|++++ ..+.. +... ............++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 3578999999987775 5589999999 44433 1111 112233456899999995
No 373
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.92 E-value=1.7 Score=36.79 Aligned_cols=79 Identities=16% Similarity=0.145 Sum_probs=52.3
Q ss_pred EEEECCCCCEEEEEe----------CCCcEEEEEcCCCeEEeeeeeccCCC----cceEEEEECCCCCEEEEEeC--CCe
Q 023642 129 VSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAKSLR----WTVTDTSLSPDQRHLVYASM--SPI 192 (279)
Q Consensus 129 ~~~~spd~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~~--d~~ 192 (279)
.+..+||++.+++++ ..-.|.+||..+-.....+.....++ -....+++++|+++++.... ...
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 367899999988753 23379999999876665544333221 12345689999999887664 457
Q ss_pred EEEEECCCCceeeee
Q 023642 193 VHIVDVGSGTMESLA 207 (279)
Q Consensus 193 i~i~d~~~~~~~~~~ 207 (279)
|.|.|+..++.....
T Consensus 120 VtVVDl~~~kvv~ei 134 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEI 134 (342)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEEECCCCceeeee
Confidence 999999998875433
No 374
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.86 E-value=2.4 Score=39.99 Aligned_cols=91 Identities=19% Similarity=0.256 Sum_probs=55.4
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEECCC--Cc--------eeeeeccccccceeEEeeCCCCCccccEEEEEEecC-
Q 023642 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGS--GT--------MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD- 238 (279)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~--~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~- 238 (279)
-.|..+.++|+|++++..+..+. .|..+.. |. .....+.... ....|. ......|..+.|+|.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~~----~~~~~~i~qv~WhP~s 158 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFFT----SNSSLEIKQVRWHPWS 158 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEe-chhhcc----CCCCceEEEEEEcCCC
Confidence 36899999999999998888664 4444421 11 1000000000 000111 113457999999996
Q ss_pred --CCEEEEecCCCeEEEEECCCC-eEEEEEe
Q 023642 239 --GRELVAGSSDDCIYVYDLEAN-KLSLRIL 266 (279)
Q Consensus 239 --g~~l~t~s~d~~i~vwd~~~~-~~~~~~~ 266 (279)
+..|+.-..|+++++||+... .+.+++.
T Consensus 159 ~~~~~l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 159 ESDSHLVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred CCCCeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence 578999999999999999753 3444443
No 375
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.68 E-value=1.1 Score=39.86 Aligned_cols=87 Identities=18% Similarity=0.232 Sum_probs=53.6
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEC---------CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCC--
Q 023642 171 TVTDTSLSPDQRHLVYASMSPIVHIVDV---------GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-- 239 (279)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~i~d~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-- 239 (279)
.|..+..+|.|..++-.+.+|.+.++=. +.|+.....+....... .|... -.=.+..++|+|+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~-~ftss----~~ltl~Qa~WHP~S~~ 179 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAER-FFTSS----TSLTLKQAAWHPSSIL 179 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccce-eeccC----CceeeeeccccCCccC
Confidence 5778889999999999999987666532 22221111111111111 11111 11246778999975
Q ss_pred -CEEEEecCCCeEEEEECCCCeEE
Q 023642 240 -RELVAGSSDDCIYVYDLEANKLS 262 (279)
Q Consensus 240 -~~l~t~s~d~~i~vwd~~~~~~~ 262 (279)
..|+.-+.|..|++||+.....+
T Consensus 180 D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 180 DPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred CceEEEEecCcEEEEEecCCcchh
Confidence 67888888999999999765544
No 376
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.66 E-value=1.3 Score=40.01 Aligned_cols=114 Identities=16% Similarity=0.086 Sum_probs=68.5
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEE------------------eCCCeEEEEECC
Q 023642 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA------------------SMSPIVHIVDVG 199 (279)
Q Consensus 138 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~------------------~~d~~i~i~d~~ 199 (279)
.++.++.+|.+...|..+|+.+...... ...++.+| ..++.+ ..++.+.-.|+.
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~ 374 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK 374 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee------ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCC
Confidence 5777888999999999999877653221 11233444 233222 235788888999
Q ss_pred CCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
+|+.+.............+ +. . .....+. ..+..|+.++.|+.|+.+|.++|+.+-+++-
T Consensus 375 tG~~~W~~~~~~~~~~~~~---g~--~-~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 375 TGKVVWEKREGTIRDSWNI---GF--P-HWGGSLA--TAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred CCcEeeEeeCCcccccccc---CC--c-ccCcceE--ecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 9987543332210000000 00 0 0001122 2467888888999999999999998877764
No 377
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=94.58 E-value=0.69 Score=43.70 Aligned_cols=125 Identities=14% Similarity=0.155 Sum_probs=71.7
Q ss_pred CCCEEEEE-eCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCC-------CCEEEEEeCCCeEEEEECCCCceeee
Q 023642 135 DGSLFVAG-FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-------QRHLVYASMSPIVHIVDVGSGTMESL 206 (279)
Q Consensus 135 d~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~-------~~~l~~~~~d~~i~i~d~~~~~~~~~ 206 (279)
+.++|+.- .....|+-.|+.+|+.+..... ....+| ..+.|+ ....+.|-.+..+..||.+-......
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~--~~~~~v--~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v 567 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKV--HDDIPV--VDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV 567 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeec--CCCcce--eEecccccccccCCCceEEEECCCceEEeccCCCCCcee
Confidence 34444433 3567899999999977665321 222234 345553 23456677788899999986431111
Q ss_pred eccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEE
Q 023642 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALW 275 (279)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v 275 (279)
... ...|. ......|++-+.+| +||.|+.+|.||+||--....-..|++-..+|..|
T Consensus 568 ~~~-----~k~Y~------~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~i 624 (794)
T PF08553_consen 568 DSQ-----SKQYS------SKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGI 624 (794)
T ss_pred ecc-----ccccc------cCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEE
Confidence 000 00111 11245677766666 78899999999999954322233344555566554
No 378
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.58 E-value=2.1 Score=34.89 Aligned_cols=112 Identities=17% Similarity=0.179 Sum_probs=65.1
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEE-cCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe---CCCeEEEEECCC-
Q 023642 126 RAYVSQFSADGSLFVAGFQASQIRIYD-VERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS---MSPIVHIVDVGS- 200 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---~d~~i~i~d~~~- 200 (279)
.+....|++++...+....+...+++. ...+...............|..+.+||||..++... .++.+.+--+..
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD 146 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence 778889999987777766666666663 333322221111122222799999999999877655 346677665432
Q ss_pred --CceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC
Q 023642 201 --GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (279)
Q Consensus 201 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~ 247 (279)
+....+..... ... .....+..+.|.+++.+++.+..
T Consensus 147 ~~g~~~~l~~~~~------~~~----~~~~~v~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 147 GDGVPRRLTGPRR------VAP----PLLSDVTDVAWSDDSTLVVLGRS 185 (253)
T ss_pred CCCCcceeccceE------ecc----cccCcceeeeecCCCEEEEEeCC
Confidence 20111111100 000 01237899999999988776554
No 379
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=94.46 E-value=3 Score=37.47 Aligned_cols=137 Identities=17% Similarity=0.125 Sum_probs=69.4
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC-------------CCeEEEE
Q 023642 130 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-------------SPIVHIV 196 (279)
Q Consensus 130 ~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-------------d~~i~i~ 196 (279)
+...++|.+++... ..+..+|+. |+.+.......+....-+++...|+|++|+.+.. .-.|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 66778999887665 788888886 4444332221111112356778899999887771 1236666
Q ss_pred ECCCCceeeeeccccccceeEE-----------eeCCCCCccccEEEEEEec-CCCEEEEecCCCeEEEEECCCCeEEEE
Q 023642 197 DVGSGTMESLANVTEIHDGLDF-----------SAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLR 264 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~v~~~~~sp-~g~~l~t~s~d~~i~vwd~~~~~~~~~ 264 (279)
| .+|+................ ........-..++++.+.+ ++.+++++-.-..|...|.++++..-.
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 7 77777554443332211111 0111111224588999999 555555555556899999999988888
Q ss_pred EeCCCc
Q 023642 265 ILAHTV 270 (279)
Q Consensus 265 ~~~h~~ 270 (279)
+-.|..
T Consensus 309 lg~~~~ 314 (477)
T PF05935_consen 309 LGPPGG 314 (477)
T ss_dssp ES-STT
T ss_pred eCCCCC
Confidence 766543
No 380
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.41 E-value=0.51 Score=41.76 Aligned_cols=105 Identities=16% Similarity=0.165 Sum_probs=56.1
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCcee
Q 023642 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~ 204 (279)
+.-...+|.+. ..+|+-...++|.|+.--.......+ .. .. .+..+-. |..|+..+.+ .|.+||..+++..
T Consensus 69 G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~k~i-~~-~~--~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i 139 (443)
T PF04053_consen 69 GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEVVKSI-KL-PF--SVEKIFG---GNLLGVKSSD-FICFYDWETGKLI 139 (443)
T ss_dssp EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-TT-------SS---EEEEE----SSSEEEEETT-EEEEE-TTT--EE
T ss_pred CceeEEEEecC-ccEEEEECCCeEEEEEcCccccceEE-cC-Cc--ccceEEc---CcEEEEECCC-CEEEEEhhHccee
Confidence 44556789984 44666666889999732222111111 11 11 2333322 8888777665 8999999999875
Q ss_pred eeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
..... ..|..+.|+++|.+++-.+.+ .+++++..
T Consensus 140 ~~i~v------------------~~vk~V~Ws~~g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 140 RRIDV------------------SAVKYVIWSDDGELVALVTKD-SIYILKYN 173 (443)
T ss_dssp EEESS-------------------E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred eEEec------------------CCCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence 54432 147899999999999988755 57777654
No 381
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.30 E-value=0.86 Score=39.85 Aligned_cols=83 Identities=17% Similarity=0.192 Sum_probs=53.5
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcc----eEEEEE---------C----CC-C
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWT----VTDTSL---------S----PD-Q 181 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----v~~~~~---------s----p~-~ 181 (279)
+....-.+.+++.+|++++.++...-|+|.++|+.++..++.. ++.++. +....- + +. .
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmW---KGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMW---KGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhh---ccCccceEEEEEeecccccccccccccCCCCcce
Confidence 5556677899999999999999888899999999987544321 222110 000000 0 00 1
Q ss_pred CE-EEEEeCCCeEEEEECCCCceee
Q 023642 182 RH-LVYASMSPIVHIVDVGSGTMES 205 (279)
Q Consensus 182 ~~-l~~~~~d~~i~i~d~~~~~~~~ 205 (279)
.+ ++.+-.-|.+-||.++.|....
T Consensus 380 l~LvIyaprRg~lEvW~~~~g~Rv~ 404 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQGPRVA 404 (415)
T ss_pred EEEEEEeccCCeEEEEecCCCCEEE
Confidence 12 3456678899999999887643
No 382
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.27 E-value=2.5 Score=34.47 Aligned_cols=120 Identities=18% Similarity=0.120 Sum_probs=72.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCC--cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEE-EeCCCeEEEEECCCC
Q 023642 125 SRAYVSQFSADGSLFVAGFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIVHIVDVGSG 201 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~i~i~d~~~~ 201 (279)
.-...+.|..++.++-+.+.-| .|+.+|+.+++........... .-..++... ..|.. .=.++...+||..+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~--FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl 120 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY--FGEGITILG--DKLYQLTWKEGTGFVYDPNTL 120 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----EEEEEEET--TEEEEEESSSSEEEEEETTTT
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc--cceeEEEEC--CEEEEEEecCCeEEEEccccc
Confidence 3456778878888888888777 7999999999766553322211 223444432 33433 346789999999987
Q ss_pred ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
+....... . +.=+.++ .|++.|+.+.....|+++|-.+-+...++..
T Consensus 121 ~~~~~~~y---------~--------~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 121 KKIGTFPY---------P--------GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp EEEEEEE----------S--------SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred eEEEEEec---------C--------CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEE
Confidence 66433221 1 1224455 5677777776677899999888776666653
No 383
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=94.16 E-value=3.6 Score=35.95 Aligned_cols=78 Identities=17% Similarity=0.132 Sum_probs=53.0
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccC------CCcceEEEEECC-----CC---CEEE
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS------LRWTVTDTSLSP-----DQ---RHLV 185 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------~~~~v~~~~~sp-----~~---~~l~ 185 (279)
+....++|++++.| |=-+++.|.++|.+.|.|++....+... .... ....|+++.|.. |+ -.++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 44558999999997 6679999999999999999877655542 2222 344678888863 33 3678
Q ss_pred EEeCCCeEEEEECC
Q 023642 186 YASMSPIVHIVDVG 199 (279)
Q Consensus 186 ~~~~d~~i~i~d~~ 199 (279)
+|...|.+.+|.+.
T Consensus 160 vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 160 VGTNSGNVLTFKIL 173 (395)
T ss_dssp EEETTSEEEEEEEE
T ss_pred EEeCCCCEEEEEEe
Confidence 88888999999764
No 384
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.08 E-value=0.24 Score=42.50 Aligned_cols=67 Identities=24% Similarity=0.411 Sum_probs=47.9
Q ss_pred CCCCCEEEEEe---------CCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC
Q 023642 178 SPDQRHLVYAS---------MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (279)
Q Consensus 178 sp~~~~l~~~~---------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d 248 (279)
|||+++++... ..+.+.+||+.+++...+... ...+....|||+|+.++... +
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-----------------~~~~~~~~~sP~g~~~~~v~-~ 62 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-----------------PPKLQDAKWSPDGKYIAFVR-D 62 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-----------------ETTBSEEEE-SSSTEEEEEE-T
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-----------------ccccccceeecCCCeeEEEe-c
Confidence 57888766632 246799999999887654432 12677899999999998775 5
Q ss_pred CeEEEEECCCCeEE
Q 023642 249 DCIYVYDLEANKLS 262 (279)
Q Consensus 249 ~~i~vwd~~~~~~~ 262 (279)
+.|++++..++...
T Consensus 63 ~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 63 NNLYLRDLATGQET 76 (353)
T ss_dssp TEEEEESSTTSEEE
T ss_pred CceEEEECCCCCeE
Confidence 78999999888554
No 385
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.02 E-value=2.5 Score=33.69 Aligned_cols=135 Identities=14% Similarity=0.084 Sum_probs=76.1
Q ss_pred hccccCccCCCCeeecc---c-c------ceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEE-EEEeCCCcEEEEE--
Q 023642 86 LAGREGNYSGRGRFSAA---D-C------CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLF-VAGFQASQIRIYD-- 152 (279)
Q Consensus 86 ~~~~~~~~~~~~~~~~~---d-~------~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l-~s~~~d~~i~iwd-- 152 (279)
.+-.+....|+|+|.+. + . .-.+..+........+...-.--+.++|+.|.+.+ ++-+.+-.|.-||
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd 188 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYD 188 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecC
Confidence 34455667888887321 0 0 00112222333333334444445678999887766 4556777887787
Q ss_pred cCCCeEEee--eeeccC---CCc-ceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCc
Q 023642 153 VERGWKIQK--DILAKS---LRW-TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGY 226 (279)
Q Consensus 153 ~~~~~~~~~--~~~~~~---~~~-~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (279)
..+|..... ++.++. ... ..-.++..-+|.+.+++-..++|..+|..+|+...-....
T Consensus 189 ~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP---------------- 252 (310)
T KOG4499|consen 189 CPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP---------------- 252 (310)
T ss_pred CCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC----------------
Confidence 556632211 111111 111 1223445557788888888889999999999975443332
Q ss_pred cccEEEEEEe
Q 023642 227 SFGIFSLKFS 236 (279)
Q Consensus 227 ~~~v~~~~~s 236 (279)
...|++++|-
T Consensus 253 t~qitsccFg 262 (310)
T KOG4499|consen 253 TPQITSCCFG 262 (310)
T ss_pred CCceEEEEec
Confidence 1278999996
No 386
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.89 E-value=0.95 Score=36.00 Aligned_cols=83 Identities=16% Similarity=0.147 Sum_probs=54.1
Q ss_pred ECCCCCEEEEEeCCCeEEEEECCCCceeeee-ccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEE
Q 023642 177 LSPDQRHLVYASMSPIVHIVDVGSGTMESLA-NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 177 ~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd 255 (279)
+..++.+|++...+|.+++||+.+++..... .............. .....|..+.++.+|.-+++-+ ++..+.||
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~---~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDK---SSSPNITSCSLTSNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccC---CCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence 4457889999999999999999998763222 11111110000000 2334789999999998888766 46789998
Q ss_pred CCCCeEEE
Q 023642 256 LEANKLSL 263 (279)
Q Consensus 256 ~~~~~~~~ 263 (279)
..-+..+.
T Consensus 94 ~~L~~W~~ 101 (219)
T PF07569_consen 94 PDLGCWIR 101 (219)
T ss_pred cccceeEE
Confidence 87555444
No 387
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.89 E-value=0.049 Score=50.82 Aligned_cols=133 Identities=14% Similarity=0.107 Sum_probs=78.6
Q ss_pred ceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcC--CCeEEee--eeeccCCCcceEEEEECC---CCCEEEEEeC
Q 023642 118 WPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVE--RGWKIQK--DILAKSLRWTVTDTSLSP---DQRHLVYASM 189 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~--~~~~~~~--~~~~~~~~~~v~~~~~sp---~~~~l~~~~~ 189 (279)
..+++..+.|-.++|.. +...+. -.-|.+.|||++ .|+.... +........++.-+.|.| +.-++.++-.
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 34678889999888854 322332 333688899886 3422111 111122333445555555 6677888888
Q ss_pred CCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEE-----------EEEecCCCEEEEecCCCeEEEEECC-
Q 023642 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFS-----------LKFSTDGRELVAGSSDDCIYVYDLE- 257 (279)
Q Consensus 190 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----------~~~sp~g~~l~t~s~d~~i~vwd~~- 257 (279)
++.+++......... . |.+ |..++.. -..||||+.|++++.||.+++|.+-
T Consensus 204 ~~~i~lL~~~ra~~~----l--------~rs-----Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 204 GGEIRLLNINRALRS----L--------FRS-----HSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred CCceeEeeechHHHH----H--------HHh-----cCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee
Confidence 888888766543321 1 111 2112222 2379999999999999988888653
Q ss_pred ----CCeEEEEEeCCC
Q 023642 258 ----ANKLSLRILAHT 269 (279)
Q Consensus 258 ----~~~~~~~~~~h~ 269 (279)
.-.|+...+.|.
T Consensus 267 ~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 267 TGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eccccHhhhhccCCCC
Confidence 334666666666
No 388
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=93.86 E-value=2.4 Score=34.28 Aligned_cols=126 Identities=18% Similarity=0.167 Sum_probs=67.4
Q ss_pred EEECCCCCEEEEEeC-C--CcEEEEEcCC----CeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCC-eEEEEECCCC
Q 023642 130 SQFSADGSLFVAGFQ-A--SQIRIYDVER----GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-IVHIVDVGSG 201 (279)
Q Consensus 130 ~~~spd~~~l~s~~~-d--~~i~iwd~~~----~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-~i~i~d~~~~ 201 (279)
-++-|||++|.+|+. + ..+++++... .............++.-+ +..-|||+.|+.|+.+. +.-+|.-...
T Consensus 72 g~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT-~~~L~DG~vlIvGG~~~~t~E~~P~~~~ 150 (243)
T PF07250_consen 72 GAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPT-ATTLPDGRVLIVGGSNNPTYEFWPPKGP 150 (243)
T ss_pred cCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcccc-ceECCCCCEEEEeCcCCCcccccCCccC
Confidence 357889999998865 2 3688888654 111111111223333333 44557999998888763 2333333211
Q ss_pred c--eeeeeccccccceeEEeeCCC-CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCC
Q 023642 202 T--MESLANVTEIHDGLDFSAADD-GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 202 ~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h 268 (279)
. ...+ .|..... ......---+...|+|+.|+.+..+. .|||..+.+.+..++.-
T Consensus 151 ~~~~~~~----------~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP~l 208 (243)
T PF07250_consen 151 GPGPVTL----------PFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTLPDL 208 (243)
T ss_pred CCCceee----------ecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCCCC
Confidence 1 1111 0100000 00001122355679999999888654 67798888777777643
No 389
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.71 E-value=4.2 Score=35.14 Aligned_cols=110 Identities=20% Similarity=0.152 Sum_probs=57.4
Q ss_pred CCeEEEEECCCCCEEEEEe-----------CCC-cEEEEEcCC--CeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC
Q 023642 125 SRAYVSQFSADGSLFVAGF-----------QAS-QIRIYDVER--GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~-----------~d~-~i~iwd~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d 190 (279)
.....++|.++|+++++-. ..+ +|.+++-.. |..- +...+...-.....+++.+++ .++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d-~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD-KSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc-eeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 4556789999999887753 223 777776532 3221 111222222346889999998 444 4444
Q ss_pred CeEEEEECCCC-----ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec
Q 023642 191 PIVHIVDVGSG-----TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 191 ~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
...++.|.... +...+... |.... ..+......++|.|||.+.++-+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~--------~~~~~-~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSG--------FGGQI-NNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEc--------cCCCC-CcccccccCceECCCCCEEEecc
Confidence 43334454321 11111110 11100 00123577899999998766544
No 390
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.65 E-value=5.5 Score=36.32 Aligned_cols=32 Identities=9% Similarity=0.199 Sum_probs=25.9
Q ss_pred CCCEEEEecCCCeEEEEECCCCeEEEEEeCCC
Q 023642 238 DGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (279)
Q Consensus 238 ~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~ 269 (279)
.+..++.++.++.++.+|.++|+.+-+++-..
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence 45566678889999999999999998887543
No 391
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.45 E-value=0.96 Score=35.99 Aligned_cols=74 Identities=16% Similarity=0.189 Sum_probs=53.8
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcCCCeEEeeee----ecc-------CCCcceEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 023642 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDI----LAK-------SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (279)
Q Consensus 132 ~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~-------~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~ 200 (279)
+..++.+|++-+.+|.+++||+.+++.+.... .+. .....|..+.++.+|.-|++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 34578899999999999999999886654331 111 2445789999998888877765 47789998876
Q ss_pred Cceeee
Q 023642 201 GTMESL 206 (279)
Q Consensus 201 ~~~~~~ 206 (279)
+....+
T Consensus 97 ~~W~~v 102 (219)
T PF07569_consen 97 GCWIRV 102 (219)
T ss_pred ceeEEe
Confidence 665443
No 392
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=93.32 E-value=5.3 Score=35.14 Aligned_cols=110 Identities=9% Similarity=0.067 Sum_probs=63.4
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~ 203 (279)
.+++..+++||+++++|.-..+|.+.+.+.+-.+.....- .+-......+.|+-+...++.- ...+.++....
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~--~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~~~--- 288 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD--TDSKSPPKQMAWCGNDAVVLSW--EDELLLVGPDG--- 288 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee--cCcCCCCcEEEEECCCcEEEEe--CCEEEEECCCC---
Confidence 3689999999999999999999999998876554443321 1222345566665443222211 22233322111
Q ss_pred eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCC
Q 023642 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h 268 (279)
..+.|..++..++..-.|| ++|..-...+.+++++..
T Consensus 289 ---------------------------~~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp~~ 325 (410)
T PF04841_consen 289 ---------------------------DSISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVPDS 325 (410)
T ss_pred ---------------------------CceEEeccCceEEeccCCc-eEEEeCCceEEEEECCHH
Confidence 1234444555444444565 888877767777776543
No 393
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.14 E-value=3.8 Score=33.27 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=53.7
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeee
Q 023642 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL 206 (279)
Q Consensus 135 d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~ 206 (279)
-|++++.|...+.+.+.+..+|.....+..+.... ......+++..|..++.|+..+..|.++..+...
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk---~~a~~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK---VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhc---cceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence 46789999999999999999997666654433321 2334678999999999999999999998776543
No 394
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=93.03 E-value=3.2 Score=35.00 Aligned_cols=97 Identities=6% Similarity=-0.075 Sum_probs=60.4
Q ss_pred eccccceEeeeeecCCCCceeeCC--CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-CeEEeeeeeccCCCcceEEEE
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQT--TSRAYVSQFSADGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTS 176 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h--~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~ 176 (279)
.+.+..+.++++...........+ ...+.++... +++++.|.....+.++..+. +..+..... ......++++.
T Consensus 103 ~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~ 179 (321)
T PF03178_consen 103 VAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVAR-DYQPRWVTAAE 179 (321)
T ss_dssp EEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEE-ESS-BEEEEEE
T ss_pred EeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEe-cCCCccEEEEE
Confidence 456677777777766622222222 2355555544 56999999888888875543 322322211 12234688999
Q ss_pred ECCCCCEEEEEeCCCeEEEEECC
Q 023642 177 LSPDQRHLVYASMSPIVHIVDVG 199 (279)
Q Consensus 177 ~sp~~~~l~~~~~d~~i~i~d~~ 199 (279)
|-+++..++.+..+|.+.++...
T Consensus 180 ~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 180 FLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EE-SSSEEEEEETTSEEEEEEE-
T ss_pred EecCCcEEEEEcCCCeEEEEEEC
Confidence 98777899999999999998875
No 395
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.00 E-value=0.67 Score=41.09 Aligned_cols=126 Identities=17% Similarity=0.226 Sum_probs=71.2
Q ss_pred CCCEE-EEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCC-------EEEEEeCCCeEEEEECCCCceeee
Q 023642 135 DGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-------HLVYASMSPIVHIVDVGSGTMESL 206 (279)
Q Consensus 135 d~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-------~l~~~~~d~~i~i~d~~~~~~~~~ 206 (279)
+.++| .++.....|+-.|+.+|+.+..- .....|.-+.+.|+.+ .-+.|-.|..|+-||.+-.....+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEW----k~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEW----KFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEe----eccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 44444 44555678888999999766542 2222377778888753 223455677899999873221101
Q ss_pred eccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEE
Q 023642 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALW 275 (279)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v 275 (279)
.... +-.|.... .-.|.+-..+| ++|.||.+|.|++||.-....-.-++|-.++|..|
T Consensus 420 -~~~q---~kqy~~k~------nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hV 477 (644)
T KOG2395|consen 420 -AVVQ---SKQYSTKN------NFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHV 477 (644)
T ss_pred -eeee---cccccccc------ccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeE
Confidence 0101 11121111 23444444454 78899999999999973222333445555555544
No 396
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.89 E-value=3 Score=36.53 Aligned_cols=101 Identities=15% Similarity=0.063 Sum_probs=59.0
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCcc--ccEEEEEEecC-CCEE
Q 023642 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYS--FGIFSLKFSTD-GREL 242 (279)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~-g~~l 242 (279)
......+.++..+|++++.++...-|.|.++|+.++....+.+--+.. .+.|.......+. ..-....-.+. ..+|
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA-qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA-QCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc-eEEEEEeecccccccccccccCCCCcceEEE
Confidence 344446889999999999999888899999999998875443321111 1111111110000 00000000001 1233
Q ss_pred E-EecCCCeEEEEECCCCeEEEEEeC
Q 023642 243 V-AGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 243 ~-t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
+ -+-.-|.|-||.+++|..+..+..
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEEe
Confidence 3 456678999999999999888864
No 397
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.85 E-value=3.5 Score=36.83 Aligned_cols=112 Identities=13% Similarity=0.121 Sum_probs=66.2
Q ss_pred eEEEEECCCCC--EE-----EEEeCCCcEEEEEcCCCeEEeeeeeccCCC----cceEEEEECCCCCEEEEEeCCCeEEE
Q 023642 127 AYVSQFSADGS--LF-----VAGFQASQIRIYDVERGWKIQKDILAKSLR----WTVTDTSLSPDQRHLVYASMSPIVHI 195 (279)
Q Consensus 127 V~~~~~spd~~--~l-----~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (279)
|+-+.+.|+.. .| +.|-.|+.|+-||.+-... .++.....|. ....|.+-. ..-+|+.|+.+|.|++
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-~kl~~~q~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRL 455 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-NKLAVVQSKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRL 455 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccCc-ceeeeeeccccccccccceeeec-CCceEEEeecCCcEEe
Confidence 77777888654 22 3455678999999873211 0111112221 122333333 3448999999999999
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
||-...+.... +.+-+ .+|..+..+.+|++++..+ +..+.+.++.
T Consensus 456 Ydri~~~AKTA-----------lPgLG-----~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 456 YDRIGRRAKTA-----------LPGLG-----DAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ehhhhhhhhhc-----------ccccC-----CceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 99833222111 11222 3889999999999987544 5666666653
No 398
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=92.71 E-value=5.6 Score=33.74 Aligned_cols=172 Identities=17% Similarity=0.107 Sum_probs=94.0
Q ss_pred eeeccccceEeeeeecCCCCceeeCCCCCeEEE-------EECC-CCCEEEEEeCCCcEEEEEcC-CCeEEeee-eeccC
Q 023642 98 RFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVS-------QFSA-DGSLFVAGFQASQIRIYDVE-RGWKIQKD-ILAKS 167 (279)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~-------~~sp-d~~~l~s~~~d~~i~iwd~~-~~~~~~~~-~~~~~ 167 (279)
.++..++.+.++++.|.....++.-...+|... ..-| ..+-|.+-+.||++.-..++ .|+...+. ..+..
T Consensus 101 ~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~ 180 (342)
T PF06433_consen 101 ALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDP 180 (342)
T ss_dssp EE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESST
T ss_pred EEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCC
Confidence 345677778889988877766665555444322 1123 22567788999999999987 45443222 12222
Q ss_pred CCcce-EEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecccc---ccceeEEeeCCC--------------------
Q 023642 168 LRWTV-TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTE---IHDGLDFSAADD-------------------- 223 (279)
Q Consensus 168 ~~~~v-~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~-------------------- 223 (279)
-..++ ..-++...+..++-.+.+|.|+-.|+............. ......+.+.+-
T Consensus 181 ~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~ 260 (342)
T PF06433_consen 181 DDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGG 260 (342)
T ss_dssp TTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--
T ss_pred CCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCC
Confidence 22233 244455555555557788888888887765432222110 000001111110
Q ss_pred -CCc-----------------------cccEEEEEEecCCC-EEEEe-cCCCeEEEEECCCCeEEEEEeCCC
Q 023642 224 -GGY-----------------------SFGIFSLKFSTDGR-ELVAG-SSDDCIYVYDLEANKLSLRILAHT 269 (279)
Q Consensus 224 -~~~-----------------------~~~v~~~~~sp~g~-~l~t~-s~d~~i~vwd~~~~~~~~~~~~h~ 269 (279)
..| ...+.++..+.+.+ +|++. ..++.+.+||..+|+.+.++++-.
T Consensus 261 ~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 261 EGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---S
T ss_pred CCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccC
Confidence 001 23456788887755 56544 457899999999999999998543
No 399
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=92.60 E-value=7.2 Score=34.72 Aligned_cols=62 Identities=15% Similarity=0.124 Sum_probs=40.7
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEee--ee-e-ccCCCcceEEEEECCCC
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK--DI-L-AKSLRWTVTDTSLSPDQ 181 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~--~~-~-~~~~~~~v~~~~~sp~~ 181 (279)
+...-..-..++|.||+++|++--..|+|++++..++..... +. . ...-.+....|+|+|+-
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 334446678899999998887776569999998665432111 10 0 11124568999999984
No 400
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.51 E-value=1.6 Score=41.18 Aligned_cols=78 Identities=14% Similarity=0.193 Sum_probs=54.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC----------CeE--Eeee------eeccCCCcceEEEEECCC---CC
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVER----------GWK--IQKD------ILAKSLRWTVTDTSLSPD---QR 182 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~----------~~~--~~~~------~~~~~~~~~v~~~~~sp~---~~ 182 (279)
.-.|..+.++|+|++|+..|..+ |.|-.+.. |.. ..+. +...+....|..+.|+|. +.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 45788899999999999888865 44443321 111 1111 111244557999999996 58
Q ss_pred EEEEEeCCCeEEEEECCCCc
Q 023642 183 HLVYASMSPIVHIVDVGSGT 202 (279)
Q Consensus 183 ~l~~~~~d~~i~i~d~~~~~ 202 (279)
+|+.-..|+++|+||+....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 89999999999999997644
No 401
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.42 E-value=4.5 Score=34.93 Aligned_cols=66 Identities=11% Similarity=0.109 Sum_probs=35.6
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEE-EcCCC-----e--EEeeeeecc--CCCcceEEEEECCCCCEEEEEe
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIY-DVERG-----W--KIQKDILAK--SLRWTVTDTSLSPDQRHLVYAS 188 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iw-d~~~~-----~--~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~ 188 (279)
+.........+++.+++ +++ +... .|..| |.+.. + .+....... .+......++|.|||.+.++-+
T Consensus 67 fa~~l~~p~Gi~~~~~G-lyV-~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 67 FAEELSMVTGLAVAVGG-VYV-ATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred eecCCCCccceeEecCC-EEE-eCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 33344566889999998 444 4443 34433 54321 1 111111111 0223478899999998766544
No 402
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.36 E-value=0.32 Score=38.29 Aligned_cols=98 Identities=13% Similarity=0.027 Sum_probs=56.3
Q ss_pred eccccceEeeeeecCC-CCceeeCCCCCe-EEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCC-cceEEEE
Q 023642 100 SAADCCHMLSRYLPVN-GPWPVDQTTSRA-YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR-WTVTDTS 176 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~-~~~~l~~h~~~V-~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~ 176 (279)
...++.+.+|++..-. .......-...| ..+.--.++.+.++++.|+.|+.|++..++.+.. ...|+ .++..+.
T Consensus 76 G~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~---~g~h~~~~~e~~i 152 (238)
T KOG2444|consen 76 GTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGY---VGQHNFESGEELI 152 (238)
T ss_pred ecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeee---eccccCCCcceeE
Confidence 4556666666544111 111122222233 3333444667889999999999999988755443 23444 4455555
Q ss_pred ECCCCCEEEEE--eCCCeEEEEECCC
Q 023642 177 LSPDQRHLVYA--SMSPIVHIVDVGS 200 (279)
Q Consensus 177 ~sp~~~~l~~~--~~d~~i~i~d~~~ 200 (279)
.+-.++.++.. |.|..++.|++..
T Consensus 153 vv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 153 VVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EecCCceEEeeccccchhhhhcchhh
Confidence 55556666665 6666677777654
No 403
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.26 E-value=5.7 Score=32.76 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=59.7
Q ss_pred CeEEEEECCCC-CEEEEEeCCCc-EEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC-----CeEEEEEC
Q 023642 126 RAYVSQFSADG-SLFVAGFQASQ-IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDV 198 (279)
Q Consensus 126 ~V~~~~~spd~-~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~i~i~d~ 198 (279)
.--.++|+|.. .-++.+-.-|+ ..++|....+.+.......+ ....-.=.|||||.+|+..-.| |.|-|||.
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~-RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG-RHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccC-ceeecccccCCCCcEEEeecCCCCCCCceEEEEec
Confidence 33456777743 34455544443 56788877654433221111 1011123599999998765433 67999999
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
+.+-... - .|+.++ -....+.|.+||+.++.+.
T Consensus 148 r~~fqrv-g---------E~~t~G-----iGpHev~lm~DGrtlvvan 180 (366)
T COG3490 148 REGFQRV-G---------EFSTHG-----IGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred cccccee-c---------ccccCC-----cCcceeEEecCCcEEEEeC
Confidence 8554321 1 122222 2456788999999988654
No 404
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=92.18 E-value=0.83 Score=41.77 Aligned_cols=89 Identities=22% Similarity=0.161 Sum_probs=47.2
Q ss_pred CCCCEEEEEeCCCeEEEEECCC----Cceeeeeccccc-----ccee-EEeeCCCCCccccEEEEEEec----CCCEEEE
Q 023642 179 PDQRHLVYASMSPIVHIVDVGS----GTMESLANVTEI-----HDGL-DFSAADDGGYSFGIFSLKFST----DGRELVA 244 (279)
Q Consensus 179 p~~~~l~~~~~d~~i~i~d~~~----~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~v~~~~~sp----~g~~l~t 244 (279)
++...++.+..||.+....... +........... ..++ .+...+...-...+..+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667888888888887777654 111111110000 0000 000000011223456666666 6789999
Q ss_pred ecCCCeEEEEECCCCeEEEEEeC
Q 023642 245 GSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 245 ~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
.+.|+++++||+.+++++.++.-
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEET
T ss_pred EeCCCeEEEEECCCCeEEEEecc
Confidence 99999999999999999877654
No 405
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=91.88 E-value=1.2 Score=40.81 Aligned_cols=73 Identities=14% Similarity=0.116 Sum_probs=45.5
Q ss_pred CCCCEEEEEeCCCcEEEEEcCC----CeEEeeeeeccC--------------------CCcceEEEEECC----CCCEEE
Q 023642 134 ADGSLFVAGFQASQIRIYDVER----GWKIQKDILAKS--------------------LRWTVTDTSLSP----DQRHLV 185 (279)
Q Consensus 134 pd~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~--------------------~~~~v~~~~~sp----~~~~l~ 185 (279)
++...|+.+..||.+....... +...... .... ....+..+++++ +..+|+
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEE-LFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLF 234 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE-----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEE-EeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEE
Confidence 5777888889999988887764 2111111 0111 123456677777 778999
Q ss_pred EEeCCCeEEEEECCCCceeeee
Q 023642 186 YASMSPIVHIVDVGSGTMESLA 207 (279)
Q Consensus 186 ~~~~d~~i~i~d~~~~~~~~~~ 207 (279)
+.+.|+++|+||+.++.+....
T Consensus 235 tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EEETTSEEEEEETTTTCEEEEE
T ss_pred EEeCCCeEEEEECCCCeEEEEe
Confidence 9999999999999999984443
No 406
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=91.74 E-value=8.7 Score=33.77 Aligned_cols=133 Identities=13% Similarity=0.120 Sum_probs=61.6
Q ss_pred CCeEEEEECCCCCEEEEEeC--------------------CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEEC--CCCC
Q 023642 125 SRAYVSQFSADGSLFVAGFQ--------------------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS--PDQR 182 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~--------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s--p~~~ 182 (279)
.--+..-|.|..+.++|+.. ..++.+||+.+.+.++.+- +.........+.|. |+..
T Consensus 181 ~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~id-Lg~~g~~pLEvRflH~P~~~ 259 (461)
T PF05694_consen 181 PFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTID-LGEEGQMPLEVRFLHDPDAN 259 (461)
T ss_dssp -----EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEE-S-TTEEEEEEEEE-SSTT--
T ss_pred CCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEe-cCCCCCceEEEEecCCCCcc
Confidence 34567788888888888752 3489999999987766543 32222235566664 4555
Q ss_pred E-EEEEeCCCeEEEEEC-CCCceee--eecccccc-ceeEEeeC--CCCCccccEEEEEEecCCCEEEEec-CCCeEEEE
Q 023642 183 H-LVYASMSPIVHIVDV-GSGTMES--LANVTEIH-DGLDFSAA--DDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVY 254 (279)
Q Consensus 183 ~-l~~~~~d~~i~i~d~-~~~~~~~--~~~~~~~~-~~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~t~s-~d~~i~vw 254 (279)
+ ++.+.....|..|-- ..++... +..+.... .+..+..- ....-..-|+.+..|.|.++|..+. .+|.|+.|
T Consensus 260 ~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqY 339 (461)
T PF05694_consen 260 YGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQY 339 (461)
T ss_dssp EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEE
T ss_pred ceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEE
Confidence 5 444445555555543 4444321 11111000 00000000 0000023589999999999998766 58999999
Q ss_pred ECCC
Q 023642 255 DLEA 258 (279)
Q Consensus 255 d~~~ 258 (279)
|+..
T Consensus 340 DISD 343 (461)
T PF05694_consen 340 DISD 343 (461)
T ss_dssp E-SS
T ss_pred ecCC
Confidence 9975
No 407
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=91.22 E-value=4 Score=35.19 Aligned_cols=76 Identities=21% Similarity=0.200 Sum_probs=43.6
Q ss_pred EECCCCCEEEEEe-CCC--cEEEEEcCCCeEEeeeeeccCCC-cceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeee
Q 023642 131 QFSADGSLFVAGF-QAS--QIRIYDVERGWKIQKDILAKSLR-WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL 206 (279)
Q Consensus 131 ~~spd~~~l~s~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~ 206 (279)
+|.+||+.|+.++ .|+ .+.+.|+.+++..+. .... .......++|+.+.++.......++-.|+.+.+...+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QL----Tdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQL----TDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEEC----ccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEE
Confidence 6788997765554 454 567778888865443 2221 2233567789999988777777899999999887655
Q ss_pred eccc
Q 023642 207 ANVT 210 (279)
Q Consensus 207 ~~~~ 210 (279)
....
T Consensus 118 y~~p 121 (386)
T PF14583_consen 118 YEVP 121 (386)
T ss_dssp EE--
T ss_pred EECC
Confidence 5443
No 408
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.90 E-value=4.4 Score=33.46 Aligned_cols=79 Identities=14% Similarity=0.271 Sum_probs=56.7
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec
Q 023642 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 167 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
+....+.++.|+|+.+.|++......-.++=...|+..........+ ..-.+.+..+|+++++--
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~---------------DpE~Ieyig~n~fvi~dE 147 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS---------------DPETIEYIGGNQFVIVDE 147 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC---------------ChhHeEEecCCEEEEEeh
Confidence 44456999999999999998888877777777778875544433221 345567777777777777
Q ss_pred CCCeEEEEECCCCe
Q 023642 247 SDDCIYVYDLEANK 260 (279)
Q Consensus 247 ~d~~i~vwd~~~~~ 260 (279)
.++.++++.+..+.
T Consensus 148 R~~~l~~~~vd~~t 161 (316)
T COG3204 148 RDRALYLFTVDADT 161 (316)
T ss_pred hcceEEEEEEcCCc
Confidence 78888888776553
No 409
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=90.55 E-value=8.4 Score=31.49 Aligned_cols=64 Identities=19% Similarity=0.189 Sum_probs=45.3
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 023642 134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (279)
Q Consensus 134 pd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~ 203 (279)
..++.|+.|.++| |.+++........+. .....|..+...|+-+.++.-+ |+.++++++..-..
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i----~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~ 68 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI----LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEP 68 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeE----eecceEEEEEEecccCEEEEEc-CCccEEEEchhhcc
Confidence 3678899999998 999998433222221 1222499999999888777665 49999999876554
No 410
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.21 E-value=9.2 Score=34.92 Aligned_cols=115 Identities=15% Similarity=0.205 Sum_probs=66.1
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCC-cce-------EEEEECCCCCEEEEEeCCCeEEEEECCCCceeeee
Q 023642 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR-WTV-------TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (279)
Q Consensus 136 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~v-------~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 207 (279)
+..++.++.++.|.-.|..+|+.+.+........ ..+ ..+++ .+..++.++.|+.+.-+|.++|+.....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4567777778899999999997766532211100 000 11122 2346777888999999999999985433
Q ss_pred ccccccceeEEeeCCCCCccccEEE-EEEecCCCEEEEec------CCCeEEEEECCCCeEEEEEe
Q 023642 208 NVTEIHDGLDFSAADDGGYSFGIFS-LKFSTDGRELVAGS------SDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~g~~l~t~s------~d~~i~vwd~~~~~~~~~~~ 266 (279)
........ ..+.+ .... ++. ++.+. .++.|+-+|.++|+.+=++.
T Consensus 147 ~~~~~~~~------------~~~tssP~v~-~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 147 KNGDYKAG------------YTITAAPLVV-KGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred cccccccc------------ccccCCcEEE-CCE-EEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 22110000 01111 1111 344 44432 26789999999999876654
No 411
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.98 E-value=2.2 Score=32.47 Aligned_cols=30 Identities=13% Similarity=0.106 Sum_probs=25.4
Q ss_pred ceEEEEECCCC------CEEEEEeCCCeEEEEECCC
Q 023642 171 TVTDTSLSPDQ------RHLVYASMSPIVHIVDVGS 200 (279)
Q Consensus 171 ~v~~~~~sp~~------~~l~~~~~d~~i~i~d~~~ 200 (279)
.|.+++|||.| .+|++...++.+.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 68999999965 3688899999999998764
No 412
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=89.89 E-value=15 Score=33.24 Aligned_cols=116 Identities=20% Similarity=0.252 Sum_probs=64.7
Q ss_pred CCCcEEEEEcCCCeEEeeeeeccCC----------------C-cce-EEEEECCCCCEEEEEeCCC--------------
Q 023642 144 QASQIRIYDVERGWKIQKDILAKSL----------------R-WTV-TDTSLSPDQRHLVYASMSP-------------- 191 (279)
Q Consensus 144 ~d~~i~iwd~~~~~~~~~~~~~~~~----------------~-~~v-~~~~~sp~~~~l~~~~~d~-------------- 191 (279)
.++.|..+|..+|+.+.+....... . ..+ ...++.+.+..++.++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence 3678999999999776654321110 0 001 1234555566777776554
Q ss_pred ----eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccE-EEEEEecCCC---EEEEecCCCeEEEEECCCCeEEE
Q 023642 192 ----IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGI-FSLKFSTDGR---ELVAGSSDDCIYVYDLEANKLSL 263 (279)
Q Consensus 192 ----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~sp~g~---~l~t~s~d~~i~vwd~~~~~~~~ 263 (279)
.+.-+|..+|+......... +....+.. ....+ ..+. .-+|. .++.++.++.++..|.++|+.+-
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~~~~-~~~~~~~~-----~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W 325 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQTTP-HDLWDYDG-----PNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLIS 325 (488)
T ss_pred CceeeEEEEcCCCCCEEEEeeCCC-CCCccccc-----CCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEee
Confidence 68889999999864432211 00000000 00011 1111 12343 57778889999999999999876
Q ss_pred EEe
Q 023642 264 RIL 266 (279)
Q Consensus 264 ~~~ 266 (279)
...
T Consensus 326 ~~~ 328 (488)
T cd00216 326 ARP 328 (488)
T ss_pred EeE
Confidence 543
No 413
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=89.77 E-value=11 Score=36.24 Aligned_cols=116 Identities=15% Similarity=0.107 Sum_probs=69.9
Q ss_pred CCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEE--eeeeeccCCCcc----------eEEEEECCCCCEEEEEeCC
Q 023642 124 TSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKI--QKDILAKSLRWT----------VTDTSLSPDQRHLVYASMS 190 (279)
Q Consensus 124 ~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~----------v~~~~~sp~~~~l~~~~~d 190 (279)
..+...++|+| +...||.-...|...||++...... ........+.+. -..+.|.++-..|+.++..
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~ 224 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS 224 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC
Confidence 35678899999 6678999999999999999221110 011111122222 3367888888888887764
Q ss_pred CeEEEEECCCCceeee-eccccccceeEEeeCCCCCccccEEEEEEecC--CC-EEEEecCCCeEEEEECCC
Q 023642 191 PIVHIVDVGSGTMESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GR-ELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 191 ~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~-~l~t~s~d~~i~vwd~~~ 258 (279)
.+.++|+.+...... .... ...+|..+.-+|. +. +++|. ..|...++..
T Consensus 225 -~l~~~d~~~~~~~~~l~~~~---------------~~~~IlDv~~~~~~~~~~FiLTs---~eiiw~~~~~ 277 (765)
T PF10214_consen 225 -KLMLIDFESNWQTEYLVTAK---------------TWSWILDVKRSPDNPSHVFILTS---KEIIWLDVKS 277 (765)
T ss_pred -ceEEEECCCCCccchhccCC---------------ChhheeeEEecCCccceEEEEec---CeEEEEEccC
Confidence 578889987765331 1110 1236777777766 22 22232 4566666655
No 414
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=89.52 E-value=10 Score=30.97 Aligned_cols=123 Identities=19% Similarity=0.197 Sum_probs=68.0
Q ss_pred CCEEEEEeCCCcEEEEEcCCC-----eEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccc
Q 023642 136 GSLFVAGFQASQIRIYDVERG-----WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVT 210 (279)
Q Consensus 136 ~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 210 (279)
...|+.+.. .+|.+|..... ..... + .....+..++|. ++.|+.+..+ ...+.|+.++....+....
T Consensus 105 ~~~L~va~k-k~i~i~~~~~~~~~f~~~~ke-~---~lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~ 176 (275)
T PF00780_consen 105 SRRLCVAVK-KKILIYEWNDPRNSFSKLLKE-I---SLPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPS 176 (275)
T ss_pred ceEEEEEEC-CEEEEEEEECCcccccceeEE-E---EcCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCcc
Confidence 344554444 58988887653 12222 2 223578899998 5577777654 4777888876654443221
Q ss_pred ccc-----------ceeEEeeC--------CC-------CCcc---------ccEEEEEEecCCCEEEEecCCCeEEEEE
Q 023642 211 EIH-----------DGLDFSAA--------DD-------GGYS---------FGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 211 ~~~-----------~~~~~~~~--------~~-------~~~~---------~~v~~~~~sp~g~~l~t~s~d~~i~vwd 255 (279)
... ....+.-. .+ .|.. ..+.++++ ..++|+..+. +.|-||+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~--~~pyli~~~~-~~iEV~~ 253 (275)
T PF00780_consen 177 DSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDNIGVFVNKNGEPSRKSTIQWSSAPQSVAY--SSPYLIAFSS-NSIEVRS 253 (275)
T ss_pred CCcchhhhcccCCCceEEEEeCCceEEEEecceEEEEcCCCCcCcccEEEcCCchhEEEE--ECCEEEEECC-CEEEEEE
Confidence 110 00000000 00 1111 12233333 3557766554 5699999
Q ss_pred CCCCeEEEEEeCCC
Q 023642 256 LEANKLSLRILAHT 269 (279)
Q Consensus 256 ~~~~~~~~~~~~h~ 269 (279)
+.+++.++++....
T Consensus 254 ~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 254 LETGELVQTIPLPN 267 (275)
T ss_pred CcCCcEEEEEECCC
Confidence 99999999998643
No 415
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.48 E-value=7.8 Score=36.37 Aligned_cols=118 Identities=12% Similarity=0.078 Sum_probs=72.3
Q ss_pred CCeEEEEECC--CCCEEEEEeCCCcEEEEEcCC-------C----eE------EeeeeeccCCCcceEEEEEC--CCCCE
Q 023642 125 SRAYVSQFSA--DGSLFVAGFQASQIRIYDVER-------G----WK------IQKDILAKSLRWTVTDTSLS--PDQRH 183 (279)
Q Consensus 125 ~~V~~~~~sp--d~~~l~s~~~d~~i~iwd~~~-------~----~~------~~~~~~~~~~~~~v~~~~~s--p~~~~ 183 (279)
..|+-+.+.- +...|+.+..||.|.+|.+++ . .. +..... ......+++++++ ...++
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~-~~v~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFH-LRVGASAWGLDIHDYKKSRL 179 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeE-eecCCceeEEEEEecCcceE
Confidence 3355554443 456788999999999996631 0 00 001111 1234479999999 88889
Q ss_pred EEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCC---C---EEEEecCCCeEEEEEC
Q 023642 184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG---R---ELVAGSSDDCIYVYDL 256 (279)
Q Consensus 184 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g---~---~l~t~s~d~~i~vwd~ 256 (279)
||+++....|.||-............ . + .+..-|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~-s-~-----------~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVP-S-H-----------QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEecccccccccc-c-c-----------ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 99988888877765543211111000 0 0 023368889987643 2 6777888998888887
No 416
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=89.37 E-value=14 Score=32.45 Aligned_cols=120 Identities=13% Similarity=0.036 Sum_probs=57.0
Q ss_pred CCCEEEEEe-CCCcEEEEEcCCC---eEEeeeeec---cC--CCcceEEEEECCCCCEEEEEeCC------CeEEEEECC
Q 023642 135 DGSLFVAGF-QASQIRIYDVERG---WKIQKDILA---KS--LRWTVTDTSLSPDQRHLVYASMS------PIVHIVDVG 199 (279)
Q Consensus 135 d~~~l~s~~-~d~~i~iwd~~~~---~~~~~~~~~---~~--~~~~v~~~~~sp~~~~l~~~~~d------~~i~i~d~~ 199 (279)
+.++|+..+ ..++|.|.|+.+. -.+.+++.. .. --.....+-.-|+|+.++++-.| |-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 566777776 6789999998742 123333321 00 00123334455899888876432 357777877
Q ss_pred CCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec--------------------CCCeEEEEECCCC
Q 023642 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--------------------SDDCIYVYDLEAN 259 (279)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s--------------------~d~~i~vwd~~~~ 259 (279)
+.+.......... ...--+.+-|.|..+.++|+. ...++++||+.+.
T Consensus 166 tf~v~g~We~~~~-------------~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r 232 (461)
T PF05694_consen 166 TFEVKGRWEKDRG-------------PQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR 232 (461)
T ss_dssp T--EEEE--SB-T-------------T------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT
T ss_pred cccccceeccCCC-------------CCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC
Confidence 6665432222111 111345566677777776643 2457999999999
Q ss_pred eEEEEEeC
Q 023642 260 KLSLRILA 267 (279)
Q Consensus 260 ~~~~~~~~ 267 (279)
+.++++.-
T Consensus 233 ~~~Q~idL 240 (461)
T PF05694_consen 233 KLLQTIDL 240 (461)
T ss_dssp EEEEEEES
T ss_pred cEeeEEec
Confidence 99999873
No 417
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=89.04 E-value=3.5 Score=35.55 Aligned_cols=106 Identities=18% Similarity=0.206 Sum_probs=50.8
Q ss_pred EEcCCCeEEeeeeecc--CCCcceEEEEECCCCCEEEEEe-CC--CeEEEEECCCCceeeeeccccccceeEEeeCCCCC
Q 023642 151 YDVERGWKIQKDILAK--SLRWTVTDTSLSPDQRHLVYAS-MS--PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGG 225 (279)
Q Consensus 151 wd~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~-~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (279)
-|..+|..+.+..... .|.-..+.=+|.+||+.|+.++ .| ..+.+.|+.+++...+......
T Consensus 15 ~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~------------- 81 (386)
T PF14583_consen 15 IDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGD------------- 81 (386)
T ss_dssp E-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-------------
T ss_pred eCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCC-------------
Confidence 3666775554433222 2223445557889997765554 34 4678889999987665542110
Q ss_pred ccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcce
Q 023642 226 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNI 272 (279)
Q Consensus 226 ~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v 272 (279)
......++|+.+.++-......|+-.|+.+.+....+......+
T Consensus 82 ---~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~ 125 (386)
T PF14583_consen 82 ---NTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWK 125 (386)
T ss_dssp ----TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEE
T ss_pred ---CccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccc
Confidence 11234567888887665556789999999987655555444433
No 418
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.32 E-value=2.8 Score=22.95 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=26.6
Q ss_pred cCCCEEEEec-CCCeEEEEECCCCeEEEEEeCCCcc
Q 023642 237 TDGRELVAGS-SDDCIYVYDLEANKLSLRILAHTVN 271 (279)
Q Consensus 237 p~g~~l~t~s-~d~~i~vwd~~~~~~~~~~~~h~~~ 271 (279)
|++++|+++. .+++|.++|..+++.+.++.....+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P 36 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYP 36 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCC
Confidence 5777766655 5789999999999999888764333
No 419
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=88.05 E-value=18 Score=31.89 Aligned_cols=31 Identities=29% Similarity=0.354 Sum_probs=25.6
Q ss_pred cEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 229 ~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
.|..++..+..+.+++.+.++.|.+|++..+
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 4999999998899999999999999999753
No 420
>PHA02713 hypothetical protein; Provisional
Probab=87.86 E-value=3.2 Score=38.13 Aligned_cols=75 Identities=5% Similarity=0.061 Sum_probs=45.8
Q ss_pred CCCEEEEEeCC------CeEEEEECCC-CceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC--e
Q 023642 180 DQRHLVYASMS------PIVHIVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD--C 250 (279)
Q Consensus 180 ~~~~l~~~~~d------~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~--~ 250 (279)
+++..+.|+.+ ..+..||..+ .+........... .....+. -+|+..++|+.++ +
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r--------------~~~~~~~--~~~~iyv~Gg~~~~~~ 526 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL--------------SALHTIL--HDNTIMMLHCYESYML 526 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc--------------ccceeEE--ECCEEEEEeeecceee
Confidence 56666666654 2467788887 5654333221110 1112222 2688888999888 8
Q ss_pred EEEEECCCCeEEEEEeCCCc
Q 023642 251 IYVYDLEANKLSLRILAHTV 270 (279)
Q Consensus 251 i~vwd~~~~~~~~~~~~h~~ 270 (279)
+-.||..+.+....-+.|..
T Consensus 527 ~e~yd~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 527 QDTFNVYTYEWNHICHQHSN 546 (557)
T ss_pred hhhcCcccccccchhhhcCC
Confidence 89999998887666666654
No 421
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=87.68 E-value=4.1 Score=27.25 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=25.7
Q ss_pred CCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEE
Q 023642 144 QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187 (279)
Q Consensus 144 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 187 (279)
.+|++..||..+++.... ..+ -.....++++||+.+++.+
T Consensus 35 ~~GRll~ydp~t~~~~vl---~~~-L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVL---LDG-LYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp --EEEEEEETTTTEEEEE---EEE-ESSEEEEEE-TTSSEEEEE
T ss_pred CCcCEEEEECCCCeEEEe---hhC-CCccCeEEEcCCCCEEEEE
Confidence 467899999999854221 112 1257899999999986654
No 422
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.48 E-value=17 Score=30.89 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=65.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCc------EEEEEcCC--C----eEEeeeeeccCCCc--------ceEEEEECCCCCE
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQ------IRIYDVER--G----WKIQKDILAKSLRW--------TVTDTSLSPDQRH 183 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~------i~iwd~~~--~----~~~~~~~~~~~~~~--------~v~~~~~sp~~~~ 183 (279)
-+.++.+.+.|++..+++-+.++. +..+++.. + -.......+..-.+ ...++++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 466788888876666666666666 55555443 1 01111111222111 3457888778888
Q ss_pred EEEEeCC------CeEEEEECCCCceeeeeccccccceeEEeeC--CCCCccccEEEEEEecCCCEEEEec
Q 023642 184 LVYASMS------PIVHIVDVGSGTMESLANVTEIHDGLDFSAA--DDGGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 184 l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
+++.=.+ ..|+.++.. |.......... .+..... .....+...-+++++|+|+.|+++.
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~---~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPA---AFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEcccc---ccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 8777677 788888876 55422211111 1100000 1111344688999999999666543
No 423
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=87.27 E-value=29 Score=33.36 Aligned_cols=128 Identities=14% Similarity=0.107 Sum_probs=70.0
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCc-----ceEEEEEC----------------CCCCEEEEEeCCCeE
Q 023642 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-----TVTDTSLS----------------PDQRHLVYASMSPIV 193 (279)
Q Consensus 135 d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~~~~s----------------p~~~~l~~~~~d~~i 193 (279)
.+..++.++.++.|.-.|..+|+.+.+......... ..+.+++. ..+..++.++.|+.+
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 355677778888999999999987766432111110 01223332 134478888899999
Q ss_pred EEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEec--CCCEEEEecC----------CCeEEEEECCCCeE
Q 023642 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSS----------DDCIYVYDLEANKL 261 (279)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~g~~l~t~s~----------d~~i~vwd~~~~~~ 261 (279)
.-.|.++|+.......... +.+...-.. ....-..+.-.| .+..++.|+. ++.|+-+|+++|+.
T Consensus 273 iALDA~TGk~~W~fg~~G~---vdl~~~~g~-~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 273 IALDADTGKLCEDFGNNGT---VDLTAGMGT-TPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred EEEECCCCCEEEEecCCCc---eeeecccCc-CCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence 9999999987532211000 001000000 000000111112 1334555532 57899999999998
Q ss_pred EEEEe
Q 023642 262 SLRIL 266 (279)
Q Consensus 262 ~~~~~ 266 (279)
+=++.
T Consensus 349 ~W~~~ 353 (764)
T TIGR03074 349 VWAWD 353 (764)
T ss_pred eeEEe
Confidence 87765
No 424
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.08 E-value=18 Score=30.75 Aligned_cols=62 Identities=23% Similarity=0.308 Sum_probs=42.4
Q ss_pred CeEEEEECCCCCEEEEEeCC------CcEEEEEcCCCeEEeeee------------eccCCCcceEEEEECCCCCEEEEE
Q 023642 126 RAYVSQFSADGSLFVAGFQA------SQIRIYDVERGWKIQKDI------------LAKSLRWTVTDTSLSPDQRHLVYA 187 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~~d------~~i~iwd~~~~~~~~~~~------------~~~~~~~~v~~~~~sp~~~~l~~~ 187 (279)
..-++++.+++.++++.=.+ ..|..++.. |.....+. .....+....+++++|||+.|+++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 44578887888888887666 788888876 54433221 112234579999999999976665
Q ss_pred e
Q 023642 188 S 188 (279)
Q Consensus 188 ~ 188 (279)
.
T Consensus 165 ~ 165 (326)
T PF13449_consen 165 M 165 (326)
T ss_pred E
Confidence 5
No 425
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=86.83 E-value=7.3 Score=26.05 Aligned_cols=41 Identities=10% Similarity=-0.015 Sum_probs=27.2
Q ss_pred eCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEe
Q 023642 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (279)
Q Consensus 188 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~ 245 (279)
..+|.+..||..+++...+..-. .-.+.|++++|+.+++.+
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L-----------------~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGL-----------------YFPNGVALSPDESFVLVA 74 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEE-----------------SSEEEEEE-TTSSEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhCC-----------------CccCeEEEcCCCCEEEEE
Confidence 34678999999998865443321 156889999999987764
No 426
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.49 E-value=8 Score=34.68 Aligned_cols=81 Identities=17% Similarity=0.146 Sum_probs=54.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEE-----c----CCCeEEee--e------eeccCCCcceEEEEECCCC---CE
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYD-----V----ERGWKIQK--D------ILAKSLRWTVTDTSLSPDQ---RH 183 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd-----~----~~~~~~~~--~------~~~~~~~~~v~~~~~sp~~---~~ 183 (279)
.-.|..+..+|.|..++-++.+|-+.++= . +.|+.... . +......-.+..++|+|+. ..
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 45577888999999999999988655432 1 22321111 0 0011222357789999976 67
Q ss_pred EEEEeCCCeEEEEECCCCcee
Q 023642 184 LVYASMSPIVHIVDVGSGTME 204 (279)
Q Consensus 184 l~~~~~d~~i~i~d~~~~~~~ 204 (279)
|..-+.|..+++||+......
T Consensus 183 L~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEEecCcEEEEEecCCcchh
Confidence 888889999999999876654
No 427
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=86.49 E-value=32 Score=33.12 Aligned_cols=134 Identities=13% Similarity=0.105 Sum_probs=75.7
Q ss_pred CCCCCeEEEEEC---C----CCCEEEEEeCCCcEEEEEc------CCC---------eEEeeeeeccCCCcceEEEEECC
Q 023642 122 QTTSRAYVSQFS---A----DGSLFVAGFQASQIRIYDV------ERG---------WKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 122 ~h~~~V~~~~~s---p----d~~~l~s~~~d~~i~iwd~------~~~---------~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.-..+|..+.|. . ..++|++-.. ..+.|+.. ... .++..+........+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~-~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTE-TSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcC-CEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456888889888 2 2235554443 56666661 110 11111111111223678999999
Q ss_pred -CCCEEEEEeCCCeEEEEECCCCcee--eeeccccccceeE-EeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEE
Q 023642 180 -DQRHLVYASMSPIVHIVDVGSGTME--SLANVTEIHDGLD-FSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 180 -~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd 255 (279)
+.+.||.....|...|||+...... ..........+-. +.+. .......+.|.++...|+.++. ..+.++|
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~----e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d 230 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPE----ELSNWKRILWVSDSNRLLVCNR-SKLMLID 230 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCc----ccCcceeeEecCCCCEEEEEcC-CceEEEE
Confidence 5578999999999999999322211 1111111111111 1111 1134568899988888887765 4588999
Q ss_pred CCCCeE
Q 023642 256 LEANKL 261 (279)
Q Consensus 256 ~~~~~~ 261 (279)
+.+...
T Consensus 231 ~~~~~~ 236 (765)
T PF10214_consen 231 FESNWQ 236 (765)
T ss_pred CCCCCc
Confidence 987654
No 428
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=86.27 E-value=11 Score=27.39 Aligned_cols=118 Identities=13% Similarity=0.175 Sum_probs=68.0
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCeEEe----eeeeccCCCcceEEEEECC---C--CCEEEEEeCCCeEEEEECC
Q 023642 129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQ----KDILAKSLRWTVTDTSLSP---D--QRHLVYASMSPIVHIVDVG 199 (279)
Q Consensus 129 ~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~v~~~~~sp---~--~~~l~~~~~d~~i~i~d~~ 199 (279)
.-.|......|+.++.-++|.|++........ ..+.+-.....|++++--| + ...|+.|+. ..+..||+.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence 34566666788888888999999875431110 0111223444677775433 2 345666655 479999998
Q ss_pred CCceeeeeccccccceeEEeeCCCCCccccEEEEEEe---c-CCCEEEEecCCCeEEEEECCCCeEEEEE
Q 023642 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS---T-DGRELVAGSSDDCIYVYDLEANKLSLRI 265 (279)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---p-~g~~l~t~s~d~~i~vwd~~~~~~~~~~ 265 (279)
...-........ .|.++.+- . +.+.++. +.+..|.-||....+..-+.
T Consensus 82 ~N~d~Fyke~~D-----------------Gvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 82 NNSDLFYKEVPD-----------------GVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cCchhhhhhCcc-----------------ceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCcEEEEEe
Confidence 766543333222 45555552 2 2344444 44677888887755554443
No 429
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.18 E-value=7.1 Score=38.73 Aligned_cols=151 Identities=13% Similarity=0.048 Sum_probs=86.8
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEE-CCC-------CCE-EEEEeCCCcEEEEEcCCCeEEeee------ee
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQF-SAD-------GSL-FVAGFQASQIRIYDVERGWKIQKD------IL 164 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~-spd-------~~~-l~s~~~d~~i~iwd~~~~~~~~~~------~~ 164 (279)
...|..+++|++........+.+-...|..+.. -|. =++ |+.+.. -.|.++-+.-.+..... ..
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~-~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATP-VEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEeccc-ceEEEEEEEeccccCccccccccee
Confidence 678999999999997777778888888877753 232 223 333332 45666654322111010 11
Q ss_pred ccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECC----CCc----eeeeeccccc----cce-eEEeeCCCCCccccEE
Q 023642 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG----SGT----MESLANVTEI----HDG-LDFSAADDGGYSFGIF 231 (279)
Q Consensus 165 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~----~~~----~~~~~~~~~~----~~~-~~~~~~~~~~~~~~v~ 231 (279)
..--...|.++....+|+.+++|-.+ .+|.+. .+- +......... ... ..+. ..+..+|.
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~----~~~~dpI~ 246 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP----GSSKDPIR 246 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC----CCCCCcce
Confidence 11123468888888888887776555 444331 111 1000000000 000 0111 12445899
Q ss_pred EEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 232 SLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 232 ~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
.++....-..+.+-+..++|.+||+..
T Consensus 247 qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 247 QITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeEeccccceeeeeccCceEEEEEccC
Confidence 999887777888999999999999976
No 430
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=86.04 E-value=3.3 Score=22.45 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=19.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeC-C--CcEEEE
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQ-A--SQIRIY 151 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~-d--~~i~iw 151 (279)
....-....|||||+.|+-.+. + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4456778899999998876544 4 444444
No 431
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=85.96 E-value=1.1 Score=42.49 Aligned_cols=69 Identities=22% Similarity=0.315 Sum_probs=46.7
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEE-----------ECCCCCEEEEEeCCCeEEE
Q 023642 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS-----------LSPDQRHLVYASMSPIVHI 195 (279)
Q Consensus 127 V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-----------~sp~~~~l~~~~~d~~i~i 195 (279)
|..+-|-++..++..+-.++.|++...++... ..+++|...+.+++ ++|||..++....||.++.
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f 261 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGF 261 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccce
Confidence 33344445778888888888888877765422 12344654444433 6899999999999998888
Q ss_pred EECC
Q 023642 196 VDVG 199 (279)
Q Consensus 196 ~d~~ 199 (279)
|.+-
T Consensus 262 ~Qiy 265 (1283)
T KOG1916|consen 262 YQIY 265 (1283)
T ss_pred eeee
Confidence 8653
No 432
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.88 E-value=15 Score=32.49 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=30.2
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 023642 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (279)
Q Consensus 167 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~ 201 (279)
.-+++|.++.|+||.+.||.--.+.+|-+++....
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d 98 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPD 98 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCC
Confidence 44568999999999999999999999999987543
No 433
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=85.67 E-value=4.2 Score=22.22 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=20.1
Q ss_pred CCCCEEEEEe-CCCeEEEEECCCCceee
Q 023642 179 PDQRHLVYAS-MSPIVHIVDVGSGTMES 205 (279)
Q Consensus 179 p~~~~l~~~~-~d~~i~i~d~~~~~~~~ 205 (279)
|+++.|+++. .++.|.++|..+++...
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~ 28 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIA 28 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEE
Confidence 6777766655 57899999998877644
No 434
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.93 E-value=6.8 Score=38.41 Aligned_cols=125 Identities=9% Similarity=0.022 Sum_probs=73.8
Q ss_pred CCeEEEEECCCCCEEEE--EeCCCcEEEEEcCCCeE--------EeeeeeccCCCcceEEEEECCCCC-EEEEEeCCCeE
Q 023642 125 SRAYVSQFSADGSLFVA--GFQASQIRIYDVERGWK--------IQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIV 193 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s--~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~i 193 (279)
-++..+...+|+...+. .+++..|..||+..-.. +..............++.|.|.-. ..+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 45566677778665433 44555888999875311 111001111122355677888543 35666778888
Q ss_pred EEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
++..+.-...... ... -....++++|+|.|+.++.|-..|++.-|--. ++....++
T Consensus 181 ~V~~~~~~~~~v~-s~p---------------~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip 236 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVT-SFP---------------VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIP 236 (1405)
T ss_pred hhhhhhhhhhhhc-ccC---------------cccceeeEEeccccceeeEecCCCeEEEeecc-cceeeccc
Confidence 8876543221110 000 12268999999999999999999998888653 44444444
No 435
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=84.70 E-value=20 Score=29.30 Aligned_cols=108 Identities=17% Similarity=0.045 Sum_probs=66.7
Q ss_pred EEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEee
Q 023642 141 AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSA 220 (279)
Q Consensus 141 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 220 (279)
-.=.++...+||..+-+.+..+ ...+. =+.++ .|+..|+.+.....++.+|..+-+............
T Consensus 105 LTWk~~~~f~yd~~tl~~~~~~-~y~~E---GWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~------ 172 (264)
T PF05096_consen 105 LTWKEGTGFVYDPNTLKKIGTF-PYPGE---GWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGR------ 172 (264)
T ss_dssp EESSSSEEEEEETTTTEEEEEE-E-SSS-----EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTE------
T ss_pred EEecCCeEEEEccccceEEEEE-ecCCc---ceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCE------
Confidence 3346788999999988776653 23332 24444 578888888888899999998876644333221111
Q ss_pred CCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 221 ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 221 ~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
--..++-+.|- +|...|=.-....|...|..+|+.+..+.
T Consensus 173 -----pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iD 212 (264)
T PF05096_consen 173 -----PVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWID 212 (264)
T ss_dssp -----E---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE
T ss_pred -----ECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEE
Confidence 11256677775 67666656667789999999998887764
No 436
>PRK10115 protease 2; Provisional
Probab=83.73 E-value=18 Score=34.23 Aligned_cols=71 Identities=10% Similarity=0.072 Sum_probs=46.7
Q ss_pred ceEEEEECCCCCEEEEEeCC-----CeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEe
Q 023642 171 TVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (279)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~ 245 (279)
.+..+.++||+++|+.+... ..+++.|+.++...... . . ..-..++|++|++.|+..
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i-~----------------~~~~~~~w~~D~~~~~y~ 189 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-L-D----------------NVEPSFVWANDSWTFYYV 189 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-c-c----------------CcceEEEEeeCCCEEEEE
Confidence 57788999999998765432 25888999887631110 0 0 011458999998866554
Q ss_pred cC------CCeEEEEECCCC
Q 023642 246 SS------DDCIYVYDLEAN 259 (279)
Q Consensus 246 s~------d~~i~vwd~~~~ 259 (279)
.. ...|+.+++.++
T Consensus 190 ~~~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 190 RKHPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred EecCCCCCCCEEEEEECCCC
Confidence 32 246888999887
No 437
>PRK13684 Ycf48-like protein; Provisional
Probab=83.63 E-value=27 Score=29.80 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=60.3
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEE-EEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRI-YDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~ 202 (279)
...+..+.+.|++.+++++.. |.+.. +| ..++..... ...-...+.++.+.|+++.++.+ ..|.+++=....+.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~-~gg~tW~~~--~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWE-PGQTAWTPH--QRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE 246 (334)
T ss_pred cceEEEEEECCCCeEEEEeCC-ceEEEEcC-CCCCeEEEe--eCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC
Confidence 567899999999877766554 54432 22 222222121 12334578999999999887765 45665432233333
Q ss_pred eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEE
Q 023642 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 252 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~ 252 (279)
.-........ .....+..+.|.|++..++.+ .++.|.
T Consensus 247 sW~~~~~~~~------------~~~~~l~~v~~~~~~~~~~~G-~~G~v~ 283 (334)
T PRK13684 247 SWSKPIIPEI------------TNGYGYLDLAYRTPGEIWAGG-GNGTLL 283 (334)
T ss_pred ccccccCCcc------------ccccceeeEEEcCCCCEEEEc-CCCeEE
Confidence 2110000000 011257888999888766554 456443
No 438
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.60 E-value=3 Score=40.66 Aligned_cols=104 Identities=8% Similarity=-0.007 Sum_probs=65.6
Q ss_pred CCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 023642 125 SRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (279)
Q Consensus 125 ~~V~~~~~spd~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~ 203 (279)
.-+.++.|+|.- ...+....|+.|++..+..-...... .......++++|+|.|++++.|-..|++.-|...-...
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s---~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik 232 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTS---FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK 232 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhhhhcc---cCcccceeeEEeccccceeeEecCCCeEEEeeccccee
Confidence 344667898843 34566677888888876543222111 13344689999999999999999999998886543322
Q ss_pred eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEE
Q 023642 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (279)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t 244 (279)
..+...... -.+.|.+|+|-..-.++++
T Consensus 233 ~~ip~Pp~~-------------e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 233 SEIPEPPVE-------------ENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ecccCCCcC-------------CCcceeEEEEecceeEEEE
Confidence 111111000 1237899999876666664
No 439
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=83.53 E-value=26 Score=32.66 Aligned_cols=70 Identities=24% Similarity=0.223 Sum_probs=45.6
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEe--cCCCEEEEecCCC
Q 023642 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS--TDGRELVAGSSDD 249 (279)
Q Consensus 172 v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~g~~l~t~s~d~ 249 (279)
..-+.-+.-++..+.-+....+.|||.+.+....... |. ....|.++.|. |+|+.+++.+-..
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~---------f~------~~~~I~dLDWtst~d~qsiLaVGf~~ 96 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEES---------FS------EDDPIRDLDWTSTPDGQSILAVGFPH 96 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeee---------ec------CCCceeeceeeecCCCCEEEEEEcCc
Confidence 3344444445554444455689999999887543222 21 12378888884 6899888888888
Q ss_pred eEEEEEC
Q 023642 250 CIYVYDL 256 (279)
Q Consensus 250 ~i~vwd~ 256 (279)
.|.++--
T Consensus 97 ~v~l~~Q 103 (631)
T PF12234_consen 97 HVLLYTQ 103 (631)
T ss_pred EEEEEEc
Confidence 8888854
No 440
>PHA02713 hypothetical protein; Provisional
Probab=82.24 E-value=26 Score=32.27 Aligned_cols=68 Identities=16% Similarity=0.039 Sum_probs=37.1
Q ss_pred CCCEEEEEeCCC-----cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCC------------------
Q 023642 135 DGSLFVAGFQAS-----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP------------------ 191 (279)
Q Consensus 135 d~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~------------------ 191 (279)
++...+.||.++ .+..||..+...... ............+.+ +|+..+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~-~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKML-PDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEEC-CCCCcccccccEEEE--CCEEEEEeCCCccccccccccccccccccc
Confidence 567777887654 478899887633221 111111111122222 677777776542
Q ss_pred -----eEEEEECCCCceee
Q 023642 192 -----IVHIVDVGSGTMES 205 (279)
Q Consensus 192 -----~i~i~d~~~~~~~~ 205 (279)
.+..||..+.+...
T Consensus 428 ~~~~~~ve~YDP~td~W~~ 446 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWET 446 (557)
T ss_pred ccccceEEEECCCCCeEee
Confidence 46678877766543
No 441
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.15 E-value=19 Score=31.94 Aligned_cols=73 Identities=5% Similarity=0.067 Sum_probs=48.3
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEee-eeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK-DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d 197 (279)
-.++|.++.||+|.+.+|.--.|+.|-+++....+.... ...+......|.+..|+.+ .-+|.-...| +-+|.
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~ 138 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQ 138 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEE
Confidence 357999999999999999999999999999843322111 1112233345888888765 5555555444 34443
No 442
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=80.19 E-value=11 Score=35.35 Aligned_cols=77 Identities=9% Similarity=0.117 Sum_probs=54.4
Q ss_pred eeCCCCCeEEEEEC--CCCCEEEEEeCCCcEEEEEcCCC--eEEeeeeeccCCCcceEEEEECCCC---C---EEEEEeC
Q 023642 120 VDQTTSRAYVSQFS--ADGSLFVAGFQASQIRIYDVERG--WKIQKDILAKSLRWTVTDTSLSPDQ---R---HLVYASM 189 (279)
Q Consensus 120 l~~h~~~V~~~~~s--pd~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~sp~~---~---~l~~~~~ 189 (279)
.......+++++++ ...+++|++++...|.||-.... +..... ...+...|.+++|-++. . .+++++-
T Consensus 159 ~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~--s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI 236 (717)
T PF08728_consen 159 HLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP--SHQHSHNIPNVSFLDDDLDPNGHVKVVATDI 236 (717)
T ss_pred EeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc--ccccccCCCeeEeecCCCCCccceEEEEEec
Confidence 34456789999998 88889999988888888765432 111110 12344578999997753 2 7888999
Q ss_pred CCeEEEEEC
Q 023642 190 SPIVHIVDV 198 (279)
Q Consensus 190 d~~i~i~d~ 198 (279)
.|.+.+|++
T Consensus 237 ~G~v~~~~I 245 (717)
T PF08728_consen 237 SGEVWTFKI 245 (717)
T ss_pred cCcEEEEEE
Confidence 999999887
No 443
>PHA03098 kelch-like protein; Provisional
Probab=79.90 E-value=32 Score=31.41 Aligned_cols=108 Identities=16% Similarity=0.138 Sum_probs=56.0
Q ss_pred CCCEEEEEeCC------CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC--------CeEEEEECCC
Q 023642 135 DGSLFVAGFQA------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--------PIVHIVDVGS 200 (279)
Q Consensus 135 d~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--------~~i~i~d~~~ 200 (279)
+++.++.|+.+ ..+..||..+.+............ .. ++ ..-++..++.|+.+ ..+.+||..+
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~-~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY-GG-CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc-Cc-eE-EEECCEEEEECCccCCCCCcccceEEEecCCC
Confidence 55666777632 357889988763322111011111 11 12 22255566666542 2388899988
Q ss_pred CceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC-----CeEEEEECCCCeE
Q 023642 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKL 261 (279)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d-----~~i~vwd~~~~~~ 261 (279)
.+........... .....+. .+++.++.|+.+ ..|.+||..+.+.
T Consensus 466 ~~W~~~~~~~~~r--------------~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 466 NKWTELSSLNFPR--------------INASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CceeeCCCCCccc--------------ccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 7764433211100 0111122 267777777754 4789999987654
No 444
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=79.85 E-value=35 Score=28.66 Aligned_cols=114 Identities=18% Similarity=0.289 Sum_probs=57.1
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEE-cCCCeEEeeee-eccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYD-VERGWKIQKDI-LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd-~~~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~ 200 (279)
-...|..+.|+|++.+.+.+ +.+.|+.=+ ........+.. ........+.+++|.+++...++|+ .|.+. .....
T Consensus 185 ~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~-~S~Dg 261 (302)
T PF14870_consen 185 SSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL-VSTDG 261 (302)
T ss_dssp SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE-EESST
T ss_pred ccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE-EeCCC
Confidence 46889999999998876655 888888877 23332222211 1112233589999999877777655 44333 33444
Q ss_pred Cce-eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEE
Q 023642 201 GTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY 254 (279)
Q Consensus 201 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vw 254 (279)
|+. ........ -..-.+.+.|.++.+-++. +.+|.|--|
T Consensus 262 GktW~~~~~~~~--------------~~~n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 262 GKTWQKDRVGEN--------------VPSNLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp TSS-EE-GGGTT--------------SSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred CccceECccccC--------------CCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 442 11111111 1225788888766555555 456655433
No 445
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=79.20 E-value=20 Score=32.73 Aligned_cols=69 Identities=13% Similarity=0.015 Sum_probs=43.3
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcCCCe-EEeeeeeccCCCcceEEEEECCCCCEEEEEeCC-CeEEEEECC
Q 023642 128 YVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-PIVHIVDVG 199 (279)
Q Consensus 128 ~~~~~spd~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~i~i~d~~ 199 (279)
..+.|+|....|+.-.....-.++++.... .+... ....+.|.+.+|.+||+.|+.+-.. =.-++||-.
T Consensus 116 QGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaD---i~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 116 QGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKAD---IKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CcccccCCCceEEEEecCceeEeeeeeeCCceEEEe---ccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 456799988887665554444456654332 22221 2445579999999999987665433 346777753
No 446
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=79.18 E-value=36 Score=28.30 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=40.3
Q ss_pred CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe------CCCeEEEEECCCCcee
Q 023642 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS------MSPIVHIVDVGSGTME 204 (279)
Q Consensus 146 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~------~d~~i~i~d~~~~~~~ 204 (279)
..|++||....+.... ..+..+.|+++.|..+.+.++.|. ....+..||..+....
T Consensus 16 ~~lC~yd~~~~qW~~~---g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~ 77 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSP---GNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS 77 (281)
T ss_pred CEEEEEECCCCEeecC---CCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee
Confidence 4799999887754332 345677899999987666777665 3456888998877653
No 447
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=78.92 E-value=38 Score=28.55 Aligned_cols=91 Identities=18% Similarity=0.171 Sum_probs=55.4
Q ss_pred EEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCcccc
Q 023642 150 IYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFG 229 (279)
Q Consensus 150 iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (279)
++|+.+++.+.. +.. ...+..|+ +|++.++-+..|.+.-+|..+|+...+..... .
T Consensus 189 vidv~s~evl~~-----GLs-mPhSPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG-----------------~ 244 (335)
T TIGR03032 189 VIDIPSGEVVAS-----GLS-MPHSPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPG-----------------F 244 (335)
T ss_pred EEEeCCCCEEEc-----Ccc-CCcCCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEECCC-----------------C
Confidence 467766654432 111 12233343 67888888899999999998888765554433 3
Q ss_pred EEEEEEecCCCEEEEecC--------------------CCeEEEEECCCCeEEEEEe
Q 023642 230 IFSLKFSTDGRELVAGSS--------------------DDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 230 v~~~~~sp~g~~l~t~s~--------------------d~~i~vwd~~~~~~~~~~~ 266 (279)
...+.|. |.++++|.. ..-|.|.|+++|..+..++
T Consensus 245 ~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~ 299 (335)
T TIGR03032 245 TRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLR 299 (335)
T ss_pred Cccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEE
Confidence 3444444 444433211 1238899999999887765
No 448
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=78.32 E-value=40 Score=28.48 Aligned_cols=85 Identities=13% Similarity=0.089 Sum_probs=51.4
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC----C----------------CeEE
Q 023642 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----S----------------PIVH 194 (279)
Q Consensus 135 d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----d----------------~~i~ 194 (279)
+|++.++=+..|.+..+|.++|+.... ....+....++|. |++++++.. + .-+.
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~V----a~vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~ 285 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPV----AFLPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVA 285 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEE----EECCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEE
Confidence 455556666667777778776643222 2233467888887 888766542 1 1267
Q ss_pred EEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCC
Q 023642 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG 239 (279)
Q Consensus 195 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 239 (279)
+.|+++|......++.... ..++++++-|.-
T Consensus 286 vidl~tG~vv~~l~feg~v--------------~EifdV~vLPg~ 316 (335)
T TIGR03032 286 VIDLNSGDVVHWLRFEGVI--------------EEIYDVAVLPGV 316 (335)
T ss_pred EEECCCCCEEEEEEeCCce--------------eEEEEEEEecCC
Confidence 7788888765554433322 157777777763
No 449
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=78.29 E-value=57 Score=30.21 Aligned_cols=108 Identities=19% Similarity=0.193 Sum_probs=61.5
Q ss_pred CCCEEEEEeCCC-----cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCC------eEEEEECCCCce
Q 023642 135 DGSLFVAGFQAS-----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP------IVHIVDVGSGTM 203 (279)
Q Consensus 135 d~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~------~i~i~d~~~~~~ 203 (279)
+|...|.|+.|| ++-.||..+.+.-.... .......+-.+.+ +|...++|+.++ .+..||..+...
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W 456 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTW 456 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCce
Confidence 677888999886 57788887763322110 1111111222222 677778887554 578899988887
Q ss_pred eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC-----eEEEEECCCCeE
Q 023642 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-----CIYVYDLEANKL 261 (279)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~-----~i~vwd~~~~~~ 261 (279)
........... -..++. -++.+.+.|+.|+ +|..||..+.+.
T Consensus 457 ~~~~~M~~~R~---------------~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W 503 (571)
T KOG4441|consen 457 TLIAPMNTRRS---------------GFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQW 503 (571)
T ss_pred eecCCcccccc---------------cceEEE-ECCEEEEECCccCCCccceEEEEcCCCCce
Confidence 55444322211 111222 3567777777665 377788776553
No 450
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=78.18 E-value=7.3 Score=19.94 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=19.8
Q ss_pred EEEEecCCCeEEEEECCCCeEEEE
Q 023642 241 ELVAGSSDDCIYVYDLEANKLSLR 264 (279)
Q Consensus 241 ~l~t~s~d~~i~vwd~~~~~~~~~ 264 (279)
.++.++.++.++.+|.++|+.+-+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 567788899999999999887654
No 451
>PHA03098 kelch-like protein; Provisional
Probab=76.81 E-value=49 Score=30.15 Aligned_cols=109 Identities=13% Similarity=0.067 Sum_probs=55.7
Q ss_pred CCCCEEEEEeCCC------cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC-----CeEEEEECCCCc
Q 023642 134 ADGSLFVAGFQAS------QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGT 202 (279)
Q Consensus 134 pd~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~i~i~d~~~~~ 202 (279)
.++..++.|+.++ .+..||..+.+.... ............+.+ +++.++.|+.+ ..+..||..+.+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~-~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKV-PELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeEC-CCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 3556667776542 577888877644221 111111111222222 56677777754 347778887766
Q ss_pred eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC------CeEEEEECCCCeE
Q 023642 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------DCIYVYDLEANKL 261 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d------~~i~vwd~~~~~~ 261 (279)
........... . . .+++ .-+++.++.|+.+ ..+..||..+++.
T Consensus 370 W~~~~~lp~~r-------------~-~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 370 WREEPPLIFPR-------------Y-N-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred eeeCCCcCcCC-------------c-c-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 54322211100 0 0 1111 2356667777632 3578888876543
No 452
>PRK13684 Ycf48-like protein; Provisional
Probab=76.13 E-value=48 Score=28.24 Aligned_cols=114 Identities=16% Similarity=0.178 Sum_probs=62.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeec-cCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA-KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~ 202 (279)
...++++.+.|+++.++.| ..|.+++=+.+.|......... ..-...+.++.+.|++..++. +.+|.+.. ....++
T Consensus 214 ~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~~-S~d~G~ 290 (334)
T PRK13684 214 SRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLLV-SKDGGK 290 (334)
T ss_pred cccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEE-cCCCeEEE-eCCCCC
Confidence 4678899999999877765 4576653344555332221111 111235788999998776554 45665543 233333
Q ss_pred e-eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEE
Q 023642 203 M-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 203 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd 255 (279)
. ........ -....+.+.|..+++.+++ +..|.|-.|+
T Consensus 291 tW~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~-G~~G~il~~~ 329 (334)
T PRK13684 291 TWEKDPVGEE--------------VPSNFYKIVFLDPEKGFVL-GQRGVLLRYV 329 (334)
T ss_pred CCeECCcCCC--------------CCcceEEEEEeCCCceEEE-CCCceEEEec
Confidence 2 11100000 1125677888777666665 4467676654
No 453
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.90 E-value=69 Score=30.35 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=31.4
Q ss_pred ccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 228 ~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
+.+..+..||+.++|+--...|.|.+-++...+++..+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 457788899999999988889999988887776665554
No 454
>PHA02790 Kelch-like protein; Provisional
Probab=74.81 E-value=62 Score=29.19 Aligned_cols=105 Identities=12% Similarity=0.025 Sum_probs=54.3
Q ss_pred CCCEEEEEeCCC---cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecccc
Q 023642 135 DGSLFVAGFQAS---QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTE 211 (279)
Q Consensus 135 d~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 211 (279)
+|+..+.|+.++ .+..||..+....... ...........+ .-+++..+.|+ .+-+||..+.+.........
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~-~m~~~r~~~~~~--~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~ 435 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGP-STYYPHYKSCAL--VFGRRLFLVGR---NAEFYCESSNTWTLIDDPIY 435 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCC-CCCCccccceEE--EECCEEEEECC---ceEEecCCCCcEeEcCCCCC
Confidence 566667777543 4678888766332211 111111111122 22555555553 46788888776644332211
Q ss_pred ccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC-----CeEEEEECCCCeE
Q 023642 212 IHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKL 261 (279)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d-----~~i~vwd~~~~~~ 261 (279)
.. ... +++ .-+|+..+.|+.+ .++..||..+++.
T Consensus 436 ~r--------------~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 436 PR--------------DNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred Cc--------------ccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 10 011 122 2367788888754 3577888877654
No 455
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=74.78 E-value=47 Score=27.49 Aligned_cols=142 Identities=13% Similarity=0.077 Sum_probs=77.2
Q ss_pred CccCCCCee-eccccceEeeeeecCCCCce--eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccC
Q 023642 91 GNYSGRGRF-SAADCCHMLSRYLPVNGPWP--VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS 167 (279)
Q Consensus 91 ~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~--l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 167 (279)
..-.++|.+ ...+..-.+-++.|..+... -.+-...-..+..-|||..-++-+.. .|.-.|-++.+...-......
T Consensus 67 vapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~ 145 (353)
T COG4257 67 VAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEH 145 (353)
T ss_pred cccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeeccccc
Confidence 344555532 33344444455655444322 22334445567778887766554332 555566655533222122222
Q ss_pred CCcceEEEEECCCCCEEEEEeC---------CCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC
Q 023642 168 LRWTVTDTSLSPDQRHLVYASM---------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238 (279)
Q Consensus 168 ~~~~v~~~~~sp~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 238 (279)
-........|.+.|++.+++.. .+.|++|+...|. ..+.|+..|+
T Consensus 146 a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~--------------------------gpyGi~atpd 199 (353)
T COG4257 146 ADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGG--------------------------GPYGICATPD 199 (353)
T ss_pred CCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCC--------------------------CCcceEECCC
Confidence 3346788899999999888763 2345555554332 3456667777
Q ss_pred CCEEEEecCCCeEEEEECCCC
Q 023642 239 GRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 239 g~~l~t~s~d~~i~vwd~~~~ 259 (279)
|..-++.-.+..|-..|-.++
T Consensus 200 Gsvwyaslagnaiaridp~~~ 220 (353)
T COG4257 200 GSVWYASLAGNAIARIDPFAG 220 (353)
T ss_pred CcEEEEeccccceEEcccccC
Confidence 776666555555555555443
No 456
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=74.76 E-value=71 Score=29.63 Aligned_cols=108 Identities=17% Similarity=0.179 Sum_probs=59.9
Q ss_pred CCCEEEEEeCCC------cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCC-----eEEEEECCCCce
Q 023642 135 DGSLFVAGFQAS------QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-----IVHIVDVGSGTM 203 (279)
Q Consensus 135 d~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-----~i~i~d~~~~~~ 203 (279)
+|...++|+.++ ++..||..+....... ....-..... ++. -++...+.|+.|+ +|-.||..+.+.
T Consensus 427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~-~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W 503 (571)
T KOG4441|consen 427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA-PMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQW 503 (571)
T ss_pred CCEEEEEcCcCCCccccceEEEEcCCCCceeecC-Ccccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCce
Confidence 667778887554 5788898876433221 1111111122 222 2566777777665 377788888776
Q ss_pred eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC-----eEEEEECCCCeE
Q 023642 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-----CIYVYDLEANKL 261 (279)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~-----~i~vwd~~~~~~ 261 (279)
..+....... ..+..+. -++...+.|+.|+ +|-.||..+.+.
T Consensus 504 ~~v~~m~~~r--------------s~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 504 TMVAPMTSPR--------------SAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred eEcccCcccc--------------ccccEEE--ECCEEEEEecccCccccceeEEcCCCCCce
Confidence 5443221111 1111122 2566777888766 588888777653
No 457
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=74.11 E-value=16 Score=28.90 Aligned_cols=49 Identities=22% Similarity=0.206 Sum_probs=32.5
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEe
Q 023642 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (279)
Q Consensus 182 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~ 245 (279)
..|+.+...+.|.+|++..........+ .-- +.|..+.++..|.+|+|-
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F---------~Tv------~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTF---------STV------GRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEE---------cch------hheeEEEeccccceEEEE
Confidence 4454446667899999984443322221 111 378999999999999984
No 458
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=72.77 E-value=54 Score=27.20 Aligned_cols=118 Identities=13% Similarity=0.079 Sum_probs=75.7
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCcee
Q 023642 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~ 204 (279)
..-..++-+|||..-+++...+.|--.|..+|+...-. .+....-..+..-|||...++-+.. -|.-+|-++.+..
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~yp---Lg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt 137 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYP---LGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT 137 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEe---cCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE
Confidence 44567888899988888887788888888888654321 2334456778889999877765444 4555677676654
Q ss_pred eeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC---------CCeEEEEECCCC
Q 023642 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---------DDCIYVYDLEAN 259 (279)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~---------d~~i~vwd~~~~ 259 (279)
........ -..-.....|.+.|..-+|+.. .+.|++|+...|
T Consensus 138 ~f~lp~~~-------------a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG 188 (353)
T COG4257 138 RFPLPLEH-------------ADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG 188 (353)
T ss_pred Eeeccccc-------------CCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC
Confidence 43322111 1124566778888887777642 235778877643
No 459
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=72.68 E-value=18 Score=30.75 Aligned_cols=74 Identities=18% Similarity=0.186 Sum_probs=46.2
Q ss_pred eCCCCCeEEEEECC-------CCCEEEEEeCCCcEEEEEcCCCeEEee-eeeccCCCcceEEEEECCCCCEEEEEeCCCe
Q 023642 121 DQTTSRAYVSQFSA-------DGSLFVAGFQASQIRIYDVERGWKIQK-DILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (279)
Q Consensus 121 ~~h~~~V~~~~~sp-------d~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~ 192 (279)
..+...+..+.|-+ .|.+|++.-..+.|....++.+..+.. ...+......+.++++.|||.++++.+.+|.
T Consensus 249 ~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~ 328 (331)
T PF07995_consen 249 YPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGK 328 (331)
T ss_dssp ETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTT
T ss_pred ecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCe
Confidence 34446677777764 345666666667888888875533322 2223455557999999999999888887777
Q ss_pred EE
Q 023642 193 VH 194 (279)
Q Consensus 193 i~ 194 (279)
|.
T Consensus 329 iy 330 (331)
T PF07995_consen 329 IY 330 (331)
T ss_dssp EE
T ss_pred Ee
Confidence 64
No 460
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=72.34 E-value=29 Score=31.26 Aligned_cols=62 Identities=15% Similarity=0.230 Sum_probs=44.5
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 023642 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (279)
Q Consensus 135 d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~ 200 (279)
...++|.|+..|-|++||--.-... . .+.+....|..+..+.+|.++++.+.. .+.+.|++-
T Consensus 572 esGyIa~as~kGDirLyDRig~rAK-t--alP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~i 633 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAK-T--ALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVPI 633 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhh-h--cCcccccceeeeEeecCCcEEEEeecc-eEEEEeccc
Confidence 3458999999999999996432211 1 234556689999999999998766653 677777753
No 461
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=71.08 E-value=11 Score=18.74 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=18.8
Q ss_pred cEEEEEEecCCCEEEEecCCCeEEEE
Q 023642 229 GIFSLKFSTDGRELVAGSSDDCIYVY 254 (279)
Q Consensus 229 ~v~~~~~sp~g~~l~t~s~d~~i~vw 254 (279)
....++++++|..+++=+....|.++
T Consensus 3 ~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 3 YPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 35678888888888777767777654
No 462
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=70.98 E-value=25 Score=26.71 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=25.4
Q ss_pred ccEEEEEEecCC------CEEEEecCCCeEEEEECCC
Q 023642 228 FGIFSLKFSTDG------RELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 228 ~~v~~~~~sp~g------~~l~t~s~d~~i~vwd~~~ 258 (279)
..+.+++|||.| -.|++.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999943 3788889999999998763
No 463
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=70.88 E-value=0.57 Score=41.16 Aligned_cols=130 Identities=16% Similarity=0.178 Sum_probs=84.6
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEE-EEeCCCeEEEEECCCCceee
Q 023642 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTMES 205 (279)
Q Consensus 127 V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~i~i~d~~~~~~~~ 205 (279)
--...|-|.+.-++.++.+..+..||-... .... ....+...+++|..++..++ .+-..+.+.+||+.+..-..
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq-~~le----~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq 111 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILE----LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ 111 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcc-eecc----cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH
Confidence 334567787766888888888989986543 2221 23344567788888887654 44567789999997654322
Q ss_pred eeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
+. +.+. |+... +.|++.+..++.+-..+.+.|++..+.+.+..+--|...+.+...
T Consensus 112 LE----------~gg~----~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av 167 (615)
T KOG2247|consen 112 LE----------SGGT----SSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAV 167 (615)
T ss_pred Hh----------ccCc----chHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEe
Confidence 11 1111 22222 678888888888888889999998776655555446666665543
No 464
>PLN02193 nitrile-specifier protein
Probab=70.43 E-value=82 Score=28.33 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=57.0
Q ss_pred CCCEEEEEeCCC-----cEEEEEcCCCeEEeeeee--ccCCCcceEEEEECCCCCEEEEEeCC----CeEEEEECCCCce
Q 023642 135 DGSLFVAGFQAS-----QIRIYDVERGWKIQKDIL--AKSLRWTVTDTSLSPDQRHLVYASMS----PIVHIVDVGSGTM 203 (279)
Q Consensus 135 d~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~d----~~i~i~d~~~~~~ 203 (279)
++++++.|+.++ .+..||+.+.+....... ....+.....+.+ +++.++.++.+ ..+.+||+.+.+.
T Consensus 278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 278 EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE--CCcEEEEECCCCCccCceEEEECCCCEE
Confidence 456667776543 467788877643221000 0011111112222 56676666654 4689999988776
Q ss_pred eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC--------------CeEEEEECCCCeEE
Q 023642 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--------------DCIYVYDLEANKLS 262 (279)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d--------------~~i~vwd~~~~~~~ 262 (279)
..+......+. .. ....++ .-++++++.|+.. ..+.++|..+.+..
T Consensus 356 ~~~~~~g~~P~-------~R----~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 356 TQVETFGVRPS-------ER----SVFASA--AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred EEeccCCCCCC-------Cc----ceeEEE--EECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence 44332111000 00 011122 2356777777753 25889999877643
No 465
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=70.34 E-value=70 Score=27.55 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=43.0
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeec
Q 023642 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLAN 208 (279)
Q Consensus 135 d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 208 (279)
+++ +..+..+|.|.-.|..++..+....... ....+..-.+..+|+ |+.++.++.++.+|..+|+......
T Consensus 68 dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~-~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~ 138 (370)
T COG1520 68 DGT-VYVGTRDGNIFALNPDTGLVKWSYPLLG-AVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRN 138 (370)
T ss_pred CCe-EEEecCCCcEEEEeCCCCcEEecccCcC-cceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEe
Confidence 444 4455788888888998887554322211 011122222222666 7777888899999998888754443
No 466
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=68.86 E-value=1.2e+02 Score=29.43 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.8
Q ss_pred EEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 241 ELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 241 ~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
.++.++.+|.++++|.++|+++...+
T Consensus 461 ~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 461 ALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred EEEEECCCCEEEEEECCCCCEEeece
Confidence 78889999999999999999887654
No 467
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=68.64 E-value=21 Score=28.20 Aligned_cols=50 Identities=14% Similarity=0.053 Sum_probs=32.3
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe
Q 023642 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS 188 (279)
Q Consensus 137 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 188 (279)
..|..+...+.|.+|++....+... ..+.. -+.|..+.++..|.||++-=
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~-~~F~T-v~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLL-CTFST-VGRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCcee-EEEcc-hhheeEEEeccccceEEEEE
Confidence 3343335557899999984322111 11222 25799999999999999864
No 468
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=68.50 E-value=17 Score=19.60 Aligned_cols=26 Identities=19% Similarity=0.448 Sum_probs=22.0
Q ss_pred EEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 242 LVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 242 l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
++.++.++.|+-.|.++|+.+=.++.
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 45568899999999999999888764
No 469
>PRK13615 lipoprotein LpqB; Provisional
Probab=68.03 E-value=1e+02 Score=28.50 Aligned_cols=106 Identities=18% Similarity=0.146 Sum_probs=61.2
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCC-Cceeee
Q 023642 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS-GTMESL 206 (279)
Q Consensus 128 ~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~-~~~~~~ 206 (279)
.+++.++++..++....++.+.++....... . ...+ ..++.-.|.++| .+-+...+...++..... |.....
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~~~~--~--~~~~--~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v 409 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDRDAV--L--LDTR--PGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPV 409 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCCcce--e--eccC--CccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEe
Confidence 7889999999998887788888876652211 1 1111 146667788877 554544433345444332 332111
Q ss_pred eccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC---CCeEEEE
Q 023642 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVY 254 (279)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~---d~~i~vw 254 (279)
.. .+. -...|..+..|+||..++.-.. .+.|+|-
T Consensus 410 -~v-------~~~------~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va 446 (557)
T PRK13615 410 -AV-------SWT------ATGRVVSLEVARDGARVLVQLETGAGPQLLVA 446 (557)
T ss_pred -ec-------ccc------CCCeeEEEEeCCCccEEEEEEecCCCCEEEEE
Confidence 11 111 1137999999999998765332 3456553
No 470
>PLN02153 epithiospecifier protein
Probab=67.55 E-value=77 Score=26.93 Aligned_cols=70 Identities=17% Similarity=0.175 Sum_probs=34.8
Q ss_pred CCCEEEEEeCC-----------CcEEEEEcCCCeEEeeeeecc--CCCcceEEEEECCCCCEEEEEeCC-----------
Q 023642 135 DGSLFVAGFQA-----------SQIRIYDVERGWKIQKDILAK--SLRWTVTDTSLSPDQRHLVYASMS----------- 190 (279)
Q Consensus 135 d~~~l~s~~~d-----------~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d----------- 190 (279)
++++++.|+.+ ..|.+||..+..-........ ........+. -+++.++.++.+
T Consensus 137 ~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~gG~~~~ 214 (341)
T PLN02153 137 ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAV--VQGKIWVVYGFATSILPGGKSDY 214 (341)
T ss_pred CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEE--ECCeEEEEeccccccccCCccce
Confidence 55666777653 247788988763322110000 1111111222 255655554422
Q ss_pred --CeEEEEECCCCceeee
Q 023642 191 --PIVHIVDVGSGTMESL 206 (279)
Q Consensus 191 --~~i~i~d~~~~~~~~~ 206 (279)
..+.+||..+.+...+
T Consensus 215 ~~~~v~~yd~~~~~W~~~ 232 (341)
T PLN02153 215 ESNAVQFFDPASGKWTEV 232 (341)
T ss_pred ecCceEEEEcCCCcEEec
Confidence 3588888887765443
No 471
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=67.39 E-value=74 Score=26.68 Aligned_cols=105 Identities=16% Similarity=0.074 Sum_probs=0.0
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccce
Q 023642 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (279)
Q Consensus 136 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 215 (279)
+++...+..+.-++|.|+.+...... +..-...+...++.. .|++...+..|.-+.++|+.+.....+........+
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~-~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~ 172 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTL-IGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGG 172 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcce-eccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCC
Q ss_pred eEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 216 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
....++.| |++-..+..|+-+.+-|+..
T Consensus 173 -------------d~~~v~IS--Gn~AYvA~~d~GL~ivDVSn 200 (370)
T COG5276 173 -------------DTHDVAIS--GNYAYVAWRDGGLTIVDVSN 200 (370)
T ss_pred -------------CceeEEEe--cCeEEEEEeCCCeEEEEccC
No 472
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=67.11 E-value=76 Score=28.78 Aligned_cols=107 Identities=17% Similarity=0.185 Sum_probs=61.5
Q ss_pred EEEECCCC--------CEEEEEeCCCcEEEEEcC-CCeEEeeeeeccCCCcceEEEEECC----CCCEEEEEeCCCeEEE
Q 023642 129 VSQFSADG--------SLFVAGFQASQIRIYDVE-RGWKIQKDILAKSLRWTVTDTSLSP----DQRHLVYASMSPIVHI 195 (279)
Q Consensus 129 ~~~~spd~--------~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~sp----~~~~l~~~~~d~~i~i 195 (279)
-+.|.|+. +.|+ |-.+..|.-.|.+ .|.++.. ......++.-.|+. ..-++|.++..|.|++
T Consensus 513 vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v----~esKdY~tKn~Fss~~tTesGyIa~as~kGDirL 587 (776)
T COG5167 513 VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKV----VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRL 587 (776)
T ss_pred eeecCCchhHHhcCccceEE-eecccceEEecccccCCceee----eeehhccccccccccccccCceEEEecCCCceee
Confidence 56777743 2344 4344555555654 2322221 12222333333433 4569999999999999
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
||--+.+...... + -...|..+..+.+|++++..+ ...+-+-|++
T Consensus 588 yDRig~rAKtalP-----------~-----lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 588 YDRIGKRAKTALP-----------G-----LGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred ehhhcchhhhcCc-----------c-----cccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 9976544322111 1 112678888889999877655 3567777765
No 473
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.53 E-value=41 Score=33.84 Aligned_cols=98 Identities=15% Similarity=0.305 Sum_probs=50.8
Q ss_pred eCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEE--------CCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccc
Q 023642 143 FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL--------SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (279)
Q Consensus 143 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--------sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 214 (279)
+.|+.+.+|+.+++..... ..+....|..+.+ .|.=++++..+.--.|.|+-+.-.+...-... -..
T Consensus 96 TiDn~L~lWny~~~~e~~~---~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~--f~~ 170 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAE---YDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSI--FNT 170 (1311)
T ss_pred EeCCeEEEEEcCCCCcccc---ccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccc--ccc
Confidence 4578999999998544332 2233334555543 33335555544445566664432221100000 011
Q ss_pred eeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeE
Q 023642 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 251 (279)
Q Consensus 215 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i 251 (279)
++....++- .|.++....+|+.+++|- |+.|
T Consensus 171 ~~~i~~dg~-----~V~~I~~t~nGRIF~~G~-dg~l 201 (1311)
T KOG1900|consen 171 SFKISVDGV-----SVNCITYTENGRIFFAGR-DGNL 201 (1311)
T ss_pred ceeeecCCc-----eEEEEEeccCCcEEEeec-CCCE
Confidence 122333222 789999888898887655 5533
No 474
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=66.17 E-value=32 Score=22.80 Aligned_cols=30 Identities=23% Similarity=0.176 Sum_probs=23.6
Q ss_pred cEEEEEEecCCCEEEEec-CCCeEEEEECCC
Q 023642 229 GIFSLKFSTDGRELVAGS-SDDCIYVYDLEA 258 (279)
Q Consensus 229 ~v~~~~~sp~g~~l~t~s-~d~~i~vwd~~~ 258 (279)
..+.+.++|++++|..++ ..+.|++|....
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 457889999999887665 467899998753
No 475
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=66.14 E-value=1.4e+02 Score=29.42 Aligned_cols=101 Identities=10% Similarity=0.203 Sum_probs=64.0
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECC--CCceeeeeccccc
Q 023642 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG--SGTMESLANVTEI 212 (279)
Q Consensus 135 d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~ 212 (279)
+|+++|.- ...|++|++.+.+.++. ...+..++..+...-.|..++.|..=+.+.+.-.+ .|......+ .
T Consensus 839 ngkllA~I--n~~vrLye~t~~~eLr~---e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr--D- 910 (1096)
T KOG1897|consen 839 NGKLLAGI--NQSVRLYEWTTERELRI---ECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR--D- 910 (1096)
T ss_pred CCeEEEec--CcEEEEEEccccceehh---hhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeeh--h-
Confidence 55666544 35899999988755554 34666678999998899999999877766665444 333332221 1
Q ss_pred cceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEEC
Q 023642 213 HDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (279)
Q Consensus 213 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~ 256 (279)
-+..|++++.+-.+..++ -+..++.+++-..
T Consensus 911 ------------~~p~Wmtaveil~~d~yl-gae~~gNlf~v~~ 941 (1096)
T KOG1897|consen 911 ------------YNPNWMTAVEILDDDTYL-GAENSGNLFTVRK 941 (1096)
T ss_pred ------------hCccceeeEEEecCceEE-eecccccEEEEEe
Confidence 144588888876555554 3344555555443
No 476
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=65.37 E-value=49 Score=32.12 Aligned_cols=88 Identities=11% Similarity=0.057 Sum_probs=49.9
Q ss_pred ccCCCCeeeccc-cceEeeeeecCCCCcee-eCCCCCeEEEEECCCCCEEEE-EeCCC-----cEEEEEcCCCe-EEeee
Q 023642 92 NYSGRGRFSAAD-CCHMLSRYLPVNGPWPV-DQTTSRAYVSQFSADGSLFVA-GFQAS-----QIRIYDVERGW-KIQKD 162 (279)
Q Consensus 92 ~~~~~~~~~~~d-~~~~~~~~~~~~~~~~l-~~h~~~V~~~~~spd~~~l~s-~~~d~-----~i~iwd~~~~~-~~~~~ 162 (279)
.|+....|.... +.+.+.+. ....+..+ ..+..+|..-+|||||++|+- .+.++ .|.+-|+.+.. .+.++
T Consensus 316 ~f~tkiAfv~~~~~~L~~~D~-dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl 394 (912)
T TIGR02171 316 TYKAKLAFRNDVTGNLAYIDY-TKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKL 394 (912)
T ss_pred cceeeEEEEEcCCCeEEEEec-CCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEe
Confidence 344444444332 23333333 33444555 778999999999999999987 44433 58888887542 22221
Q ss_pred eeccCCCcceEEEEECCCCCE
Q 023642 163 ILAKSLRWTVTDTSLSPDQRH 183 (279)
Q Consensus 163 ~~~~~~~~~v~~~~~sp~~~~ 183 (279)
.-....|..-...++|..
T Consensus 395 ---~ve~aaiprwrv~e~gdt 412 (912)
T TIGR02171 395 ---PVENAAIPRWRVLENGDT 412 (912)
T ss_pred ---ecccccccceEecCCCCe
Confidence 111334555555666654
No 477
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=64.94 E-value=80 Score=30.36 Aligned_cols=81 Identities=10% Similarity=-0.014 Sum_probs=53.7
Q ss_pred ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 023642 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d 197 (279)
..+..-..+|.+.++..| ++-|+.+|.|.++...+............|...|+.+...-.|-+++..+.| .+++++
T Consensus 620 ~~~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~-~~rlfh 695 (925)
T KOG3522|consen 620 ISIPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD-EERLFH 695 (925)
T ss_pred cccccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC-EEEEec
Confidence 334555677777777644 5667788999999987654333322234555579999998888777777766 566666
Q ss_pred CCCCc
Q 023642 198 VGSGT 202 (279)
Q Consensus 198 ~~~~~ 202 (279)
.++..
T Consensus 696 tetl~ 700 (925)
T KOG3522|consen 696 TETLW 700 (925)
T ss_pred ccccC
Confidence 65543
No 478
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=64.33 E-value=40 Score=27.34 Aligned_cols=92 Identities=15% Similarity=0.052 Sum_probs=48.3
Q ss_pred EEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC-C--CeEEEEECCC----CceeeeeccccccceeEEee
Q 023642 148 IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-S--PIVHIVDVGS----GTMESLANVTEIHDGLDFSA 220 (279)
Q Consensus 148 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d--~~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~ 220 (279)
-.+||+.+++.... . ....-...+=++-|||++|.+|+. + ..+++++... .......... .
T Consensus 48 s~~yD~~tn~~rpl-~--v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m---------~ 115 (243)
T PF07250_consen 48 SVEYDPNTNTFRPL-T--VQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDM---------Q 115 (243)
T ss_pred EEEEecCCCcEEec-c--CCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccc---------c
Confidence 34788877643221 1 111112223357789999988874 2 3577777644 1111000000 0
Q ss_pred CCCCCccccEEEEEEecCCCEEEEecCCC-eEEEEEC
Q 023642 221 ADDGGYSFGIFSLKFSTDGRELVAGSSDD-CIYVYDL 256 (279)
Q Consensus 221 ~~~~~~~~~v~~~~~sp~g~~l~t~s~d~-~i~vwd~ 256 (279)
..-|--++.--|||+.|+.|+... +.-+|.-
T Consensus 116 -----~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~ 147 (243)
T PF07250_consen 116 -----SGRWYPTATTLPDGRVLIVGGSNNPTYEFWPP 147 (243)
T ss_pred -----CCCccccceECCCCCEEEEeCcCCCcccccCC
Confidence 111445556678999999888764 3445543
No 479
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=63.81 E-value=33 Score=33.22 Aligned_cols=60 Identities=15% Similarity=0.316 Sum_probs=38.5
Q ss_pred CeEEEEECCCCceeee-eccccccceeEEeeCCCCCccccEEEEEEecCCCEEEE-ecCCC-----eEEEEECCC-CeEE
Q 023642 191 PIVHIVDVGSGTMESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA-GSSDD-----CIYVYDLEA-NKLS 262 (279)
Q Consensus 191 ~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t-~s~d~-----~i~vwd~~~-~~~~ 262 (279)
+.+.+-|..+.....+ .. +...|.+-.|||||++|+- .+.++ .|++-|+.+ +.-+
T Consensus 329 ~~L~~~D~dG~n~~~ve~~-----------------~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~ 391 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVEIE-----------------DTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGL 391 (912)
T ss_pred CeEEEEecCCCCceEEEec-----------------CCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCc
Confidence 4677777766554432 11 3347889999999999987 33333 599999976 3333
Q ss_pred EEEeC
Q 023642 263 LRILA 267 (279)
Q Consensus 263 ~~~~~ 267 (279)
.+++-
T Consensus 392 vkl~v 396 (912)
T TIGR02171 392 VKLPV 396 (912)
T ss_pred eEeec
Confidence 44443
No 480
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=62.04 E-value=1.1e+02 Score=26.75 Aligned_cols=72 Identities=21% Similarity=0.116 Sum_probs=43.8
Q ss_pred EEEECCCCCEEEEEeCCC-----------cEEEEEcCCCeEEeeeeeccCCC-cc-eEEEEECCCCCEEEEEeC---C-C
Q 023642 129 VSQFSADGSLFVAGFQAS-----------QIRIYDVERGWKIQKDILAKSLR-WT-VTDTSLSPDQRHLVYASM---S-P 191 (279)
Q Consensus 129 ~~~~spd~~~l~s~~~d~-----------~i~iwd~~~~~~~~~~~~~~~~~-~~-v~~~~~sp~~~~l~~~~~---d-~ 191 (279)
.+.|.+|++.|+....+. .|+.|.+.++..-... .+.... .. ...+..++|+++|+..+. + .
T Consensus 174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~l-vfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s 252 (414)
T PF02897_consen 174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDEL-VFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSES 252 (414)
T ss_dssp EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EE-EEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEE
T ss_pred eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCee-EEeecCCCcEEEEEEecCcccEEEEEEEccccCC
Confidence 399999988876664333 3788888776332111 122222 22 668899999999775442 2 3
Q ss_pred eEEEEECCCC
Q 023642 192 IVHIVDVGSG 201 (279)
Q Consensus 192 ~i~i~d~~~~ 201 (279)
.+++.|+..+
T Consensus 253 ~v~~~d~~~~ 262 (414)
T PF02897_consen 253 EVYLLDLDDG 262 (414)
T ss_dssp EEEEEECCCT
T ss_pred eEEEEecccc
Confidence 5888888875
No 481
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=61.58 E-value=1.7e+02 Score=28.87 Aligned_cols=120 Identities=18% Similarity=0.195 Sum_probs=66.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCC------CEEEEEeCCCeEEEEEC
Q 023642 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ------RHLVYASMSPIVHIVDV 198 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~------~~l~~~~~d~~i~i~d~ 198 (279)
..++....+.+...++.++.++.+...++..+. +... .-...+..|.|+.++|-| ++++.|.++..+.+.-.
T Consensus 488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~-~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~ 565 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREV-SHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTF 565 (1096)
T ss_pred CceEEEEEeecceEEEEecCccEEEEEEeeccc-eeee-eeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEE
Confidence 445555555556667777766777666666543 1111 112345579999999842 37888888776555432
Q ss_pred -CCCceeeee--ccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEE--ECCCCe
Q 023642 199 -GSGTMESLA--NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY--DLEANK 260 (279)
Q Consensus 199 -~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vw--d~~~~~ 260 (279)
......... .....+ -.|.-..|-.|..+|.++..||.+.-| |..+|.
T Consensus 566 ~pd~~~~~~~~l~~~~iP--------------RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~ 618 (1096)
T KOG1897|consen 566 LPDLILITHEQLSGEIIP--------------RSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQ 618 (1096)
T ss_pred CCCcceeeeeccCCCccc--------------hheeeEEeeccceEEEEEcCCceEEEEEEEcccce
Confidence 222221111 011111 134444555567889899999976655 444443
No 482
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=60.32 E-value=99 Score=25.71 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=46.0
Q ss_pred eCCCCCeEEEEECCCCCEEEEEe------CCCcEEEEEcCCCeEEeeeeec-cCCCcceEEEEECC-CCC-EEEEEe-CC
Q 023642 121 DQTTSRAYVSQFSADGSLFVAGF------QASQIRIYDVERGWKIQKDILA-KSLRWTVTDTSLSP-DQR-HLVYAS-MS 190 (279)
Q Consensus 121 ~~h~~~V~~~~~spd~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~sp-~~~-~l~~~~-~d 190 (279)
.+..+.|+++.|..+.+++++|. ....+..||+.+.......... ....++|..+.+.. |+. ..+.|. .+
T Consensus 33 ~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~ 112 (281)
T PF12768_consen 33 NGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSAN 112 (281)
T ss_pred CCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecC
Confidence 34678999999997777777774 3557889999876432210000 12346788887743 443 333333 33
Q ss_pred C--eEEEEEC
Q 023642 191 P--IVHIVDV 198 (279)
Q Consensus 191 ~--~i~i~d~ 198 (279)
+ .+..||=
T Consensus 113 g~~~l~~~dG 122 (281)
T PF12768_consen 113 GSTFLMKYDG 122 (281)
T ss_pred CCceEEEEcC
Confidence 3 4555643
No 483
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=59.50 E-value=1.1e+02 Score=25.77 Aligned_cols=42 Identities=26% Similarity=0.355 Sum_probs=36.1
Q ss_pred cccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCC
Q 023642 227 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 227 ~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h 268 (279)
...+++|...++|.+|+++-.-.+|.+.|-++|+.+-.+.|.
T Consensus 143 ~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~ 184 (299)
T PF14269_consen 143 YFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGK 184 (299)
T ss_pred ccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCC
Confidence 345888998899999999888889999999999988888665
No 484
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=59.42 E-value=49 Score=21.92 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=23.0
Q ss_pred ceEEEEECCCCCEEEEEe-CCCeEEEEECC
Q 023642 171 TVTDTSLSPDQRHLVYAS-MSPIVHIVDVG 199 (279)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~ 199 (279)
....+.++|++++|..++ ..+.|++|...
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 467899999999887665 56889998765
No 485
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=58.94 E-value=1.3e+02 Score=26.53 Aligned_cols=111 Identities=18% Similarity=0.259 Sum_probs=62.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeE-----EeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK-----IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~ 198 (279)
...++++.|.+++.+++++ .+|.+ +|..+.++. ..... ...-...+.++.|.+++..+++ +..|.+....-
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~~f~~~~-~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~D 355 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDFDFEEAD-IKSRGFGILDVGYRSKKEAWAA-GGSGILLRSTD 355 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccccceeecc-cCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeCC
Confidence 4668899999999988766 44554 444444431 11110 1112235889999988776555 45676665533
Q ss_pred CCCce-eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEE
Q 023642 199 GSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY 254 (279)
Q Consensus 199 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vw 254 (279)
.|+. ........ -....+.+.|.++++.+++| .+|.|.-|
T Consensus 356 -~G~tW~~~~~~~~--------------~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 356 -GGKSWKRDKGADN--------------IAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred -CCcceeEccccCC--------------CCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 3332 21110000 12257899998877777665 45655433
No 486
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=58.91 E-value=95 Score=25.04 Aligned_cols=80 Identities=11% Similarity=0.115 Sum_probs=50.0
Q ss_pred CCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeee--eccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEe
Q 023642 168 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL--ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (279)
Q Consensus 168 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~ 245 (279)
....+..+.|.|....|+.-+.++.++..|..++..... ...... -.+....+.|.|--..|=..
T Consensus 25 ~ge~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~a-------------l~g~~~gvDFNP~aDRlRvv 91 (236)
T PF14339_consen 25 AGESLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVA-------------LSGTAFGVDFNPAADRLRVV 91 (236)
T ss_pred CCCeEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeeccccccc-------------ccCceEEEecCcccCcEEEE
Confidence 345789999999666666667788899999999886443 111111 11245778888864444334
Q ss_pred cCCCeEEEEECCCCe
Q 023642 246 SSDDCIYVYDLEANK 260 (279)
Q Consensus 246 s~d~~i~vwd~~~~~ 260 (279)
+.++.-.-.+..+|.
T Consensus 92 s~~GqNlR~npdtGa 106 (236)
T PF14339_consen 92 SNTGQNLRLNPDTGA 106 (236)
T ss_pred ccCCcEEEECCCCCC
Confidence 445555555666654
No 487
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=58.23 E-value=22 Score=19.24 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=15.8
Q ss_pred CCCEEEEecCCCeEEEEECCC
Q 023642 238 DGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 238 ~g~~l~t~s~d~~i~vwd~~~ 258 (279)
.+..++.++.|+.++.+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 356788888899999999864
No 488
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=57.80 E-value=1.1e+02 Score=25.62 Aligned_cols=69 Identities=13% Similarity=0.089 Sum_probs=36.1
Q ss_pred CCCEEEEEeC-----CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCC----eEEEEECCCCceee
Q 023642 135 DGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP----IVHIVDVGSGTMES 205 (279)
Q Consensus 135 d~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----~i~i~d~~~~~~~~ 205 (279)
++...+.|+. ...+..||+.+.+.... ....... .....+..-+++..+.|+.++ .+.+||..+.+...
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~ 200 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFEL-PDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQK 200 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeEC-CCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEE
Confidence 5666677764 24688889887633221 1111100 111122233566777777653 35678888776543
No 489
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=57.12 E-value=1.2e+02 Score=25.52 Aligned_cols=137 Identities=18% Similarity=0.125 Sum_probs=70.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCC-Ccc----eEEEEECCCCCEEEEEeCCCeEEEEECC
Q 023642 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL-RWT----VTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~----v~~~~~sp~~~~l~~~~~d~~i~i~d~~ 199 (279)
-.++++...++|.+|+|+-.-..|.+.|..+|+.+.... +. .+. -...++--|-+++-.+..++.|.+||=.
T Consensus 144 ~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lg---G~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 144 FHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLG---GKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred cEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeC---CCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 457888888999999999888899999999987666531 11 000 0112222233334334556667777652
Q ss_pred C----------Cceeeeeccccccc-eeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEE
Q 023642 200 S----------GTMESLANVTEIHD-GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI 265 (279)
Q Consensus 200 ~----------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~ 265 (279)
. +....+-....... -..+..+...-++..--++..-|+|..|++=+..+.+.-++.. |+.+..+
T Consensus 221 ~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~~g~~~E~~~~-G~vv~~~ 296 (299)
T PF14269_consen 221 NSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGNNGRISEFTPD-GEVVWEA 296 (299)
T ss_pred CCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCCCceEEEECCC-CCEEEEE
Confidence 1 11111110000000 0011101111122222344556888888887777777766643 5555443
No 490
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=55.44 E-value=1.9e+02 Score=27.38 Aligned_cols=32 Identities=25% Similarity=0.468 Sum_probs=29.5
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVE 154 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~ 154 (279)
..+.|-.+.|.++++.+++.-.+|.|.+||..
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~ 159 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFS 159 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEecc
Confidence 47889999999999999999999999999993
No 491
>PHA02790 Kelch-like protein; Provisional
Probab=55.32 E-value=1.6e+02 Score=26.57 Aligned_cols=108 Identities=9% Similarity=0.003 Sum_probs=53.9
Q ss_pred CCCEEEEEeCCC-----cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC--CeEEEEECCCCceeeee
Q 023642 135 DGSLFVAGFQAS-----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--PIVHIVDVGSGTMESLA 207 (279)
Q Consensus 135 d~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--~~i~i~d~~~~~~~~~~ 207 (279)
++..++.|+.++ .+..||..++...... ...........+. -++...+.|+.+ ..+..||..+.+.....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~-~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIP-PMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECC-CCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 455667777543 5777888876433221 1111111122222 366677777753 35777887766543332
Q ss_pred ccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC---eEEEEECCCCeE
Q 023642 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD---CIYVYDLEANKL 261 (279)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~---~i~vwd~~~~~~ 261 (279)
....... ....+ .-+|+..+.|+.++ ++..||.++.+.
T Consensus 348 ~l~~~r~--------------~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 348 SLLKPRC--------------NPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred CCCCCCc--------------ccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEE
Confidence 2211100 11111 23566667766543 466777766543
No 492
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=55.27 E-value=1.5e+02 Score=26.14 Aligned_cols=112 Identities=15% Similarity=0.235 Sum_probs=57.5
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCC-eEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceee
Q 023642 127 AYVSQFSADGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (279)
Q Consensus 127 V~~~~~spd~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~ 205 (279)
...+..++|+.+++.+..-.-++-||--.. +.... ......+.++.|.+++..++.+ .+|.+.. ....++.-.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~----~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~ 314 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHN----RASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEE 314 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEec----CCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccc
Confidence 455667788887777765433334443221 11111 2334468999999999888765 4455433 222332100
Q ss_pred eeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEE
Q 023642 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY 254 (279)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vw 254 (279)
.. .|.......-...+.++.|.+++..+++| ..|.+...
T Consensus 315 ~~---------~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s 353 (398)
T PLN00033 315 DF---------DFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRS 353 (398)
T ss_pred cc---------ceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEe
Confidence 00 00000000011258889999887766655 45655544
No 493
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.95 E-value=1.6e+02 Score=29.58 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=26.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVE 154 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~ 154 (279)
......++|+|.-.+++.+...|.|++|-..
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEeccc
Confidence 4556678999999999999999999998654
No 494
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=54.18 E-value=1.3e+02 Score=25.34 Aligned_cols=73 Identities=12% Similarity=0.091 Sum_probs=46.7
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcC------CCeEEeeeeecc---CCCcceEEEEECCCCCE------------E
Q 023642 126 RAYVSQFSADGSLFVAGFQASQIRIYDVE------RGWKIQKDILAK---SLRWTVTDTSLSPDQRH------------L 184 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~~d~~i~iwd~~------~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~------------l 184 (279)
.-+.++++|.+.+-++...-+...+||.. ..+.+...+... ......+.+.|+....+ +
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 34678999988877887778899999986 222222222111 12345778888754433 4
Q ss_pred EEEeCCCeEEEEEC
Q 023642 185 VYASMSPIVHIVDV 198 (279)
Q Consensus 185 ~~~~~d~~i~i~d~ 198 (279)
+.+++||+|.=|..
T Consensus 104 if~tEdGTisaW~p 117 (336)
T TIGR03118 104 LFVTEDGTLSGWAP 117 (336)
T ss_pred EEEeCCceEEeecC
Confidence 56667777777764
No 495
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=53.48 E-value=1.4e+02 Score=25.17 Aligned_cols=110 Identities=10% Similarity=0.026 Sum_probs=54.2
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCCeE---EeeeeeccCCCcceEEEEECCCCCEEEEEeC-----CCeEEEEECCCC
Q 023642 135 DGSLFVAGFQA-----SQIRIYDVERGWK---IQKDILAKSLRWTVTDTSLSPDQRHLVYASM-----SPIVHIVDVGSG 201 (279)
Q Consensus 135 d~~~l~s~~~d-----~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-----d~~i~i~d~~~~ 201 (279)
++.+++.|+.+ ..+..||+.+... ............. .+++. -+++..+.|+. ...+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~-~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFEN-GSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccC-ceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 55666777654 3566777766542 1111111111111 12222 24566666653 236888898877
Q ss_pred ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC----eEEEEECCCCeE
Q 023642 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD----CIYVYDLEANKL 261 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~----~i~vwd~~~~~~ 261 (279)
+...+....... .....+...++++.+.|+.++ .+.+||..+.+.
T Consensus 150 ~W~~~~~~p~~~---------------r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 150 EWFELPDFPGEP---------------RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CeeECCCCCCCC---------------CCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 654332211000 111122234567777777653 356888887654
No 496
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.95 E-value=1.3e+02 Score=28.75 Aligned_cols=53 Identities=17% Similarity=0.267 Sum_probs=36.1
Q ss_pred CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 023642 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (279)
Q Consensus 146 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~ 203 (279)
-.|+||+.. |..+.... ..|. .+..+.|+.+. .|++...+|++++|++.....
T Consensus 64 ~~I~If~~s-G~lL~~~~--w~~~-~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~i 116 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRIL--WKHG-ELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFI 116 (829)
T ss_pred eeEEEEecc-ccchHHHH--hcCC-CeeeecccCCc-eEEEEeccceEEEeecchhhh
Confidence 358888876 44444322 2333 68889998765 455668999999999976554
No 497
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=52.53 E-value=57 Score=23.77 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=27.6
Q ss_pred CCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCe-EEeeeeeccCCCcceEEEEECCC
Q 023642 124 TSRAYVSQFSADGSLFVAGF-QASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPD 180 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~sp~ 180 (279)
...+.-.-|.+|.+.|..++ .|+.|+.|.+.... .+.... ......+..+++|-|.
T Consensus 10 s~g~L~P~yD~dt~llyl~gKGD~~ir~yEv~~~~p~l~~l~-~~~s~~~~~G~~~lPK 67 (136)
T PF08954_consen 10 SSGVLMPFYDEDTNLLYLAGKGDGNIRYYEVSDESPYLHYLS-EYRSPEPQKGFAFLPK 67 (136)
T ss_dssp -SS-EEEEE-TTT-EEEEEETT-S-EEEEEE-SSTTSEEEEE-EE--SS--SEEEE--G
T ss_pred CCceeEeeEcCCCCEEEEEeccCcEEEEEEEcCCCCceEEcc-ccccCCCeEeeEecCc
Confidence 34566677888888876554 57899999997663 222222 2234456778888884
No 498
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=50.49 E-value=27 Score=33.09 Aligned_cols=33 Identities=12% Similarity=0.058 Sum_probs=28.1
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 023642 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (279)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~ 202 (279)
..++++.-+|.|+.++.+..||.+++|+....+
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence 357888899999999999999999999876544
No 499
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=50.24 E-value=33 Score=17.18 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=19.1
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 023642 125 SRAYVSQFSADGSLFVAGFQASQIRIYD 152 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~d~~i~iwd 152 (279)
..|.+++..+ .+++.+...+-+|+|.
T Consensus 2 E~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccC--CEEEEEeCCCeEEecC
Confidence 3567777765 5888888888898873
No 500
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=49.29 E-value=1.4e+02 Score=25.91 Aligned_cols=113 Identities=13% Similarity=0.039 Sum_probs=55.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCC-CcceEEEEECCCCCEEEEEe---------------
Q 023642 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL-RWTVTDTSLSPDQRHLVYAS--------------- 188 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~--------------- 188 (279)
++-..++|...+.-|+.+..---+..-+...+......-...+. -.-..++...|+|...++-+
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~ 194 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALE 194 (376)
T ss_pred CCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeec
Confidence 55677899988866666654333444444443211000000000 01133455555444333322
Q ss_pred --CCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC--CCeEEEE
Q 023642 189 --MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVY 254 (279)
Q Consensus 189 --~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~--d~~i~vw 254 (279)
.+|.+.-||..+.....+.... .-.+.++.|||+.+++.+-. ...-+.|
T Consensus 195 g~~~GRl~~YD~~tK~~~VLld~L-----------------~F~NGlaLS~d~sfvl~~Et~~~ri~ryw 247 (376)
T KOG1520|consen 195 GDPTGRLFRYDPSTKVTKVLLDGL-----------------YFPNGLALSPDGSFVLVAETTTARIKRYW 247 (376)
T ss_pred CCCccceEEecCcccchhhhhhcc-----------------cccccccCCCCCCEEEEEeeccceeeeeE
Confidence 3456666666655443222211 13567889999998876532 2344555
Done!