BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023643
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
+A + SA+ D WDV S + KGHS+Y+ C +N IV+GS D +
Sbjct: 93 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 152
Query: 225 ARIWDCKSGKCIKVI----DPV 242
RIWD K+GKC+K + DPV
Sbjct: 153 VRIWDVKTGKCLKTLPAHSDPV 174
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 168 DPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARI 227
+PQ I S + D WDV++ + HSD + + + IV+ S DG RI
Sbjct: 138 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 197
Query: 228 WDCKSGKCIKVI 239
WD SG+C+K +
Sbjct: 198 WDTASGQCLKTL 209
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED 222
+++ P G + S++ D W + + GH + + + +N +V+ S+D
Sbjct: 49 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD 108
Query: 223 GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLV 267
T +IWD SGKC+K LKG + V C + + +V
Sbjct: 109 KTLKIWDVSSGKCLKT--------LKGHSNYVFCCNFNPQSNLIV 145
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ---I 216
P + + P G I +A D+ WD + + GH + +CI A S I
Sbjct: 215 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 274
Query: 217 VTGSEDGTARIWDCKSGKCIKVI 239
V+GSED IW+ ++ + ++ +
Sbjct: 275 VSGSEDNLVYIWNLQTKEIVQKL 297
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSR-IKMVFKGHSDYLHCIVARNSTNQIVTGSE 221
+A+ + G I S++ D WD S + +K + + + + + I+ +
Sbjct: 175 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 234
Query: 222 DGTARIWDCKSGKCIKVIDPVKDKQ 246
D T ++WD GKC+K K+++
Sbjct: 235 DNTLKLWDYSKGKCLKTYTGHKNEK 259
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS--EDGTARIW 228
G I S + D+ Y W++++ I +GH+D + + N I + + D T ++W
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Query: 229 --DC 230
DC
Sbjct: 331 KSDC 334
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
+A + SA+ D WDV S + KGHS+Y+ C +N IV+GS D +
Sbjct: 95 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 154
Query: 225 ARIWDCKSGKCIKVI----DPV 242
RIWD K+GKC+K + DPV
Sbjct: 155 VRIWDVKTGKCLKTLPAHSDPV 176
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 168 DPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARI 227
+PQ I S + D WDV++ + HSD + + + IV+ S DG RI
Sbjct: 140 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 199
Query: 228 WDCKSGKCIKVI 239
WD SG+C+K +
Sbjct: 200 WDTASGQCLKTL 211
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED 222
+++ P G + S++ D W + + GH + + + +N +V+ S+D
Sbjct: 51 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD 110
Query: 223 GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLV 267
T +IWD SGKC+K LKG + V C + + +V
Sbjct: 111 KTLKIWDVSSGKCLKT--------LKGHSNYVFCCNFNPQSNLIV 147
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ---I 216
P + + P G I +A D+ WD + + GH + +CI A S I
Sbjct: 217 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 276
Query: 217 VTGSEDGTARIWDCKSGKCIKVI 239
V+GSED IW+ ++ + ++ +
Sbjct: 277 VSGSEDNLVYIWNLQTKEIVQKL 299
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSR-IKMVFKGHSDYLHCIVARNSTNQIVTGSE 221
+A+ + G I S++ D WD S + +K + + + + + I+ +
Sbjct: 177 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 236
Query: 222 DGTARIWDCKSGKCIKVIDPVKDKQ 246
D T ++WD GKC+K K+++
Sbjct: 237 DNTLKLWDYSKGKCLKTYTGHKNEK 261
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS--EDGTARIW 228
G I S + D+ Y W++++ I +GH+D + + N I + + D T ++W
Sbjct: 273 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Query: 229 --DC 230
DC
Sbjct: 333 KSDC 336
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
+A + SA+ D WDV S + KGHS+Y+ C +N IV+GS D +
Sbjct: 88 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 147
Query: 225 ARIWDCKSGKCIKVI----DPV 242
RIWD K+GKC+K + DPV
Sbjct: 148 VRIWDVKTGKCLKTLPAHSDPV 169
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 168 DPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARI 227
+PQ I S + D WDV++ + HSD + + + IV+ S DG RI
Sbjct: 133 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 192
Query: 228 WDCKSGKCIKVI 239
WD SG+C+K +
Sbjct: 193 WDTASGQCLKTL 204
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 10/137 (7%)
Query: 131 INLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVES 190
+ QG KP N+ K + +++ P G + S++ D W
Sbjct: 14 LYFQGTQSKPTPVKPNYALKFTLAGHTKAV--SSVKFSPNGEWLASSSADKLIKIWGAYD 71
Query: 191 SRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGV 250
+ + GH + + + +N +V+ S+D T +IWD SGKC+K LKG
Sbjct: 72 GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--------LKGH 123
Query: 251 ISCVSCITLDASESWLV 267
+ V C + + +V
Sbjct: 124 SNYVFCCNFNPQSNLIV 140
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ---I 216
P + + P G I +A D+ WD + + GH + +CI A S I
Sbjct: 210 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 269
Query: 217 VTGSEDGTARIWDCKSGKCIKVI 239
V+GSED IW+ ++ + ++ +
Sbjct: 270 VSGSEDNLVYIWNLQTKEIVQKL 292
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSR-IKMVFKGHSDYLHCIVARNSTNQIVTGSE 221
+A+ + G I S++ D WD S + +K + + + + + I+ +
Sbjct: 170 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 229
Query: 222 DGTARIWDCKSGKCIKVIDPVKDKQ 246
D T ++WD GKC+K K+++
Sbjct: 230 DNTLKLWDYSKGKCLKTYTGHKNEK 254
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS--EDGTARIW 228
G I S + D+ Y W++++ I +GH+D + + N I + + D T ++W
Sbjct: 266 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Query: 229 --DC 230
DC
Sbjct: 326 KSDC 329
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
+A + SA+ D WDV S + KGHS+Y+ C +N IV+GS D +
Sbjct: 71 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 225 ARIWDCKSGKCIKVI----DPV 242
RIWD K+GKC+K + DPV
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPV 152
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 168 DPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARI 227
+PQ I S + D WDV++ + HSD + + + IV+ S DG RI
Sbjct: 116 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175
Query: 228 WDCKSGKCIKVI 239
WD SG+C+K +
Sbjct: 176 WDTASGQCLKTL 187
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED 222
+++ P G + S++ D W + + GH + + + +N +V+ S+D
Sbjct: 27 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD 86
Query: 223 GTARIWDCKSGKCIKVI 239
T +IWD SGKC+K +
Sbjct: 87 KTLKIWDVSSGKCLKTL 103
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ---I 216
P + + P G I +A D+ WD + + GH + +CI A S I
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 252
Query: 217 VTGSEDGTARIWDCKSGKCIK 237
V+GSED IW+ ++ + ++
Sbjct: 253 VSGSEDNLVYIWNLQTKEIVQ 273
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSR-IKMVFKGHSDYLHCIVARNSTNQIVTGSE 221
+A+ + G I S++ D WD S + +K + + + + + I+ +
Sbjct: 153 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 212
Query: 222 DGTARIWDCKSGKCIKVIDPVKDKQ 246
D T ++WD GKC+K K+++
Sbjct: 213 DNTLKLWDYSKGKCLKTYTGHKNEK 237
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS--EDGTARIW 228
G I S + D+ Y W++++ I +GH+D + + N I + + D T ++W
Sbjct: 249 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Query: 229 --DC 230
DC
Sbjct: 309 KSDC 312
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
+A + SA+ D WDV S + KGHS+Y+ C +N IV+GS D +
Sbjct: 71 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 225 ARIWDCKSGKCIKVI----DPV 242
RIWD K+GKC+K + DPV
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPV 152
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 168 DPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARI 227
+PQ I S + D WDV++ + HSD + + + IV+ S DG RI
Sbjct: 116 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175
Query: 228 WDCKSGKCIKVI 239
WD SG+C+K +
Sbjct: 176 WDTASGQCLKTL 187
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED 222
+++ P G + S++ D W + + GH + + + +N +V+ S+D
Sbjct: 27 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD 86
Query: 223 GTARIWDCKSGKCIKVI 239
T +IWD SGKC+K +
Sbjct: 87 KTLKIWDVSSGKCLKTL 103
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ---I 216
P + + P G I +A D+ WD + + GH + +CI A S I
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 252
Query: 217 VTGSEDGTARIWDCKSGKCIK 237
V+GSED IW+ ++ + ++
Sbjct: 253 VSGSEDNLVYIWNLQTKEIVQ 273
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSR-IKMVFKGHSDYLHCIVARNSTNQIVTGSE 221
+A+ + G I S++ D WD S + +K + + + + + I+ +
Sbjct: 153 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 212
Query: 222 DGTARIWDCKSGKCIKVIDPVKDKQ 246
D T ++WD GKC+K K+++
Sbjct: 213 DNTLKLWDYSKGKCLKTYTGHKNEK 237
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS--EDGTARIW 228
G I S + D+ Y W++++ I +GH+D + + N I + + D T ++W
Sbjct: 249 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Query: 229 --DC 230
DC
Sbjct: 309 KSDC 312
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
+A + SA+ D WDV S + KGHS+Y+ C +N IV+GS D +
Sbjct: 67 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 126
Query: 225 ARIWDCKSGKCIKVI----DPV 242
RIWD K+GKC+K + DPV
Sbjct: 127 VRIWDVKTGKCLKTLPAHSDPV 148
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 168 DPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARI 227
+PQ I S + D WDV++ + HSD + + + IV+ S DG RI
Sbjct: 112 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 171
Query: 228 WDCKSGKCIKVI 239
WD SG+C+K +
Sbjct: 172 WDTASGQCLKTL 183
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED 222
+++ P G + S++ D W + + GH + + + +N +V+ S+D
Sbjct: 23 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD 82
Query: 223 GTARIWDCKSGKCIKVI 239
T +IWD SGKC+K +
Sbjct: 83 KTLKIWDVSSGKCLKTL 99
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ---I 216
P + + P G I +A D+ WD + + GH + +CI A S I
Sbjct: 189 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 248
Query: 217 VTGSEDGTARIWDCKSGKCIK 237
V+GSED IW+ ++ + ++
Sbjct: 249 VSGSEDNLVYIWNLQTKEIVQ 269
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSR-IKMVFKGHSDYLHCIVARNSTNQIVTGSE 221
+A+ + G I S++ D WD S + +K + + + + + I+ +
Sbjct: 149 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 208
Query: 222 DGTARIWDCKSGKCIKVIDPVKDKQ 246
D T ++WD GKC+K K+++
Sbjct: 209 DNTLKLWDYSKGKCLKTYTGHKNEK 233
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS--EDGTARIW 228
G I S + D+ Y W++++ I +GH+D + + N I + + D T ++W
Sbjct: 245 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Query: 229 --DC 230
DC
Sbjct: 305 KSDC 308
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
+A + SA+ D WDV S + KGHS+Y+ C +N IV+GS D +
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 225 ARIWDCKSGKCIKVI----DPV 242
RIWD K+GKC+K + DPV
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPV 158
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 168 DPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARI 227
+PQ I S + D WDV++ + HSD + + + IV+ S DG RI
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 228 WDCKSGKCIKVI 239
WD SG+C+K +
Sbjct: 182 WDTASGQCLKTL 193
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED 222
+++ P G + S++ D W + + GH + + + +N +V+ S+D
Sbjct: 33 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD 92
Query: 223 GTARIWDCKSGKCIKVI 239
T +IWD SGKC+K +
Sbjct: 93 KTLKIWDVSSGKCLKTL 109
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ---I 216
P + + P G I +A D+ WD + + GH + +CI A S I
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 258
Query: 217 VTGSEDGTARIWDCKSGKCIKVI 239
V+GSED IW+ ++ + ++ +
Sbjct: 259 VSGSEDNLVYIWNLQTKEIVQKL 281
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSR-IKMVFKGHSDYLHCIVARNSTNQIVTGSE 221
+A+ + G I S++ D WD S + +K + + + + + I+ +
Sbjct: 159 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 218
Query: 222 DGTARIWDCKSGKCIKVIDPVKDKQ 246
D T ++WD GKC+K K+++
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGHKNEK 243
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS--EDGTARIW 228
G I S + D+ Y W++++ I +GH+D + + N I + + D T ++W
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Query: 229 --DC 230
DC
Sbjct: 315 KSDC 318
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
+A + SA+ D WDV S + KGHS+Y+ C +N IV+GS D +
Sbjct: 70 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 129
Query: 225 ARIWDCKSGKCIKVI----DPV 242
RIWD K+GKC+K + DPV
Sbjct: 130 VRIWDVKTGKCLKTLPAHSDPV 151
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 168 DPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARI 227
+PQ I S + D WDV++ + HSD + + + IV+ S DG RI
Sbjct: 115 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 174
Query: 228 WDCKSGKCIKVI 239
WD SG+C+K +
Sbjct: 175 WDTASGQCLKTL 186
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED 222
+++ P G + S++ D W + + GH + + + +N +V+ S+D
Sbjct: 26 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD 85
Query: 223 GTARIWDCKSGKCIKVI 239
T +IWD SGKC+K +
Sbjct: 86 KTLKIWDVSSGKCLKTL 102
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ---I 216
P + + P G I +A D+ WD + + GH + +CI A S I
Sbjct: 192 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 251
Query: 217 VTGSEDGTARIWDCKSGKCIK 237
V+GSED IW+ ++ + ++
Sbjct: 252 VSGSEDNLVYIWNLQTKEIVQ 272
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSR-IKMVFKGHSDYLHCIVARNSTNQIVTGSE 221
+A+ + G I S++ D WD S + +K + + + + + I+ +
Sbjct: 152 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 211
Query: 222 DGTARIWDCKSGKCIKVIDPVKDKQ 246
D T ++WD GKC+K K+++
Sbjct: 212 DNTLKLWDYSKGKCLKTYTGHKNEK 236
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS--EDGTARIW 228
G I S + D+ Y W++++ I +GH+D + + N I + + D T ++W
Sbjct: 248 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
Query: 229 --DC 230
DC
Sbjct: 308 KSDC 311
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
+A + SA+ D WDV S + KGHS+Y+ C +N IV+GS D +
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 225 ARIWDCKSGKCIKVI----DPV 242
RIWD K+GKC+K + DPV
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPV 158
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 168 DPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARI 227
+PQ I S + D WDV++ + HSD + + + IV+ S DG RI
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 228 WDCKSGKCIKVI 239
WD SG+C+K +
Sbjct: 182 WDTASGQCLKTL 193
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED 222
+++ P G + S++ D W + + GH + + + +N +V+ S+D
Sbjct: 33 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD 92
Query: 223 GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLV 267
T +IWD SGKC+K LKG + V C + + +V
Sbjct: 93 KTLKIWDVSSGKCLKT--------LKGHSNYVFCCNFNPQSNLIV 129
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ---I 216
P + + P G I +A D+ WD + + GH + +CI A S I
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 258
Query: 217 VTGSEDGTARIWDCKSGKCIKVI 239
V+GSED IW+ ++ + ++ +
Sbjct: 259 VSGSEDNLVYIWNLQTKEIVQKL 281
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSR-IKMVFKGHSDYLHCIVARNSTNQIVTGSE 221
+A+ + G I S++ D WD S + +K + + + + + I+ +
Sbjct: 159 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 218
Query: 222 DGTARIWDCKSGKCIKVIDPVKDKQ 246
D T ++WD GKC+K K+++
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGHKNEK 243
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS--EDGTARIW 228
G I S + D+ Y W++++ I +GH+D + + N I + + D T ++W
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Query: 229 --DC 230
DC
Sbjct: 315 KSDC 318
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
+A + SA+ D WDV S + KGHS+Y+ C +N IV+GS D +
Sbjct: 72 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 131
Query: 225 ARIWDCKSGKCIKVI----DPV 242
RIWD K+GKC+K + DPV
Sbjct: 132 VRIWDVKTGKCLKTLPAHSDPV 153
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 168 DPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARI 227
+PQ I S + D WDV++ + HSD + + + IV+ S DG RI
Sbjct: 117 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 176
Query: 228 WDCKSGKCIKVI 239
WD SG+C+K +
Sbjct: 177 WDTASGQCLKTL 188
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED 222
+++ P G + S++ D W + + GH + + + +N +V+ S+D
Sbjct: 28 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD 87
Query: 223 GTARIWDCKSGKCIKVI 239
T +IWD SGKC+K +
Sbjct: 88 KTLKIWDVSSGKCLKTL 104
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ---I 216
P + + P G I +A D+ WD + + GH + +CI A S I
Sbjct: 194 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 253
Query: 217 VTGSEDGTARIWDCKSGKCIK 237
V+GSED IW+ ++ + ++
Sbjct: 254 VSGSEDNLVYIWNLQTKEIVQ 274
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSR-IKMVFKGHSDYLHCIVARNSTNQIVTGSE 221
+A+ + G I S++ D WD S + +K + + + + + I+ +
Sbjct: 154 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 213
Query: 222 DGTARIWDCKSGKCIKVIDPVKDKQ 246
D T ++WD GKC+K K+++
Sbjct: 214 DNTLKLWDYSKGKCLKTYTGHKNEK 238
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS--EDGTARIW 228
G I S + D+ Y W++++ I +GH+D + + N I + + D T ++W
Sbjct: 250 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Query: 229 --DC 230
DC
Sbjct: 310 KSDC 313
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
+A + SA+ D WDV S + KGHS+Y+ C +N IV+GS D +
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 225 ARIWDCKSGKCIKVI----DPV 242
RIWD K+GKC+K + DPV
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPV 158
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 168 DPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARI 227
+PQ I S + D WDV++ + HSD + + + IV+ S DG RI
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 228 WDCKSGKCIKVI 239
WD SG+C+K +
Sbjct: 182 WDTASGQCLKTL 193
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED 222
+++ P G + S++ D W + + GH + + + +N +V+ S+D
Sbjct: 33 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD 92
Query: 223 GTARIWDCKSGKCIKVI 239
T +IWD SGKC+K +
Sbjct: 93 KTLKIWDVSSGKCLKTL 109
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ---I 216
P + + P G I +A D+ WD + + GH + +CI A S I
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 258
Query: 217 VTGSEDGTARIWDCKSGKCIKVI 239
V+GSED IW+ ++ + ++ +
Sbjct: 259 VSGSEDNLVYIWNLQTKEIVQKL 281
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSR-IKMVFKGHSDYLHCIVARNSTNQIVTGSE 221
+A+ + G I S++ D WD S + +K + + + + + I+ +
Sbjct: 159 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 218
Query: 222 DGTARIWDCKSGKCIKVIDPVKDKQ 246
D T ++WD GKC+K K+++
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGHKNEK 243
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS--EDGTARIW 228
G I S + D+ Y W++++ I +GH+D + + N I + + D T ++W
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Query: 229 --DC 230
DC
Sbjct: 315 KSDC 318
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
+A + SA+ D WDV S + KGHS+Y+ C +N IV+GS D +
Sbjct: 76 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 135
Query: 225 ARIWDCKSGKCIKVI----DPV 242
RIWD K+GKC+K + DPV
Sbjct: 136 VRIWDVKTGKCLKTLPAHSDPV 157
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 168 DPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARI 227
+PQ I S + D WDV++ + HSD + + + IV+ S DG RI
Sbjct: 121 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 180
Query: 228 WDCKSGKCIKVI 239
WD SG+C+K +
Sbjct: 181 WDTASGQCLKTL 192
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED 222
+++ P G + S++ D W + + GH + + + +N +V+ S+D
Sbjct: 32 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD 91
Query: 223 GTARIWDCKSGKCIKVI 239
T +IWD SGKC+K +
Sbjct: 92 KTLKIWDVSSGKCLKTL 108
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ---I 216
P + + P G I +A D+ WD + + GH + +CI A S I
Sbjct: 198 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 257
Query: 217 VTGSEDGTARIWDCKSGKCIKVI 239
V+GSED IW+ ++ + ++ +
Sbjct: 258 VSGSEDNLVYIWNLQTKEIVQKL 280
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSR-IKMVFKGHSDYLHCIVARNSTNQIVTGSE 221
+A+ + G I S++ D WD S + +K + + + + + I+ +
Sbjct: 158 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 217
Query: 222 DGTARIWDCKSGKCIKVIDPVKDKQ 246
D T ++WD GKC+K K+++
Sbjct: 218 DNTLKLWDYSKGKCLKTYTGHKNEK 242
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS--EDGTARIW 228
G I S + D+ Y W++++ I +GH+D + + N I + + D T ++W
Sbjct: 254 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Query: 229 --DC 230
DC
Sbjct: 314 KSDC 317
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
+A + SA+ D WDV S + KGHS+Y+ C +N IV+GS D +
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 225 ARIWDCKSGKCIKVI----DPV 242
RIWD K+GKC+K + DPV
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPV 155
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 168 DPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARI 227
+PQ I S + D WDV++ + HSD + + + IV+ S DG RI
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 228 WDCKSGKCIKVI 239
WD SG+C+K +
Sbjct: 179 WDTASGQCLKTL 190
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 38/77 (49%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED 222
+++ P G + +++ D W + + GH + + + +N +V+ S+D
Sbjct: 30 SSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD 89
Query: 223 GTARIWDCKSGKCIKVI 239
T +IWD SGKC+K +
Sbjct: 90 KTLKIWDVSSGKCLKTL 106
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ---I 216
P + + P G I +A D+ WD + + GH + +CI A S I
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 217 VTGSEDGTARIWDCKSGKCIKVI 239
V+GSED IW+ ++ + ++ +
Sbjct: 256 VSGSEDNLVYIWNLQTKEIVQKL 278
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSR-IKMVFKGHSDYLHCIVARNSTNQIVTGSE 221
+A+ + G I S++ D WD S + +K + + + + + I+ +
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 215
Query: 222 DGTARIWDCKSGKCIKVIDPVKDKQ 246
D T ++WD GKC+K K+++
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEK 240
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS--EDGTARIW 228
G I S + D+ Y W++++ I +GH+D + + N I + + D T ++W
Sbjct: 252 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Query: 229 --DC 230
DC
Sbjct: 312 KSDC 315
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
+A + SA+ D WDV S + KGHS+Y+ C +N IV+GS D +
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 225 ARIWDCKSGKCIKVI----DPV 242
RIWD K+GKC+K + DPV
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPV 155
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 168 DPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARI 227
+PQ I S + D WDV++ + HSD + + + IV+ S DG RI
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 228 WDCKSGKCIKVI 239
WD SG+C+K +
Sbjct: 179 WDTASGQCLKTL 190
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED 222
+++ P G + S++ D W + + GH + + + +N +V+ S+D
Sbjct: 30 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD 89
Query: 223 GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLV 267
T +IWD SGKC+K LKG + V C + + +V
Sbjct: 90 KTLKIWDVSSGKCLKT--------LKGHSNYVFCCNFNPQSNLIV 126
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ---I 216
P + + P G I +A D+ WD + + GH + +CI A S I
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 217 VTGSEDGTARIWDCKSGKCIKVI 239
V+GSED IW+ ++ + ++ +
Sbjct: 256 VSGSEDNLVYIWNLQTKEIVQKL 278
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSR-IKMVFKGHSDYLHCIVARNSTNQIVTGSE 221
+A+ + G I S++ D WD S + +K + + + + + I+ +
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 215
Query: 222 DGTARIWDCKSGKCIKVIDPVKDKQ 246
D T ++WD GKC+K K+++
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEK 240
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
+A + SA+ D WDV S + KGHS+Y+ C +N IV+GS D +
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 225 ARIWDCKSGKCIKVI----DPV 242
RIWD K+GKC+K + DPV
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPV 155
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 168 DPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARI 227
+PQ I S + D WDV++ + HSD + + + IV+ S DG RI
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 228 WDCKSGKCIKVI 239
WD SG+C+K +
Sbjct: 179 WDTASGQCLKTL 190
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED 222
+++ P G + S++ D W + + GH + + + +N +V+ S+D
Sbjct: 30 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD 89
Query: 223 GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLV 267
T +IWD SGKC+K LKG + V C + + +V
Sbjct: 90 KTLKIWDVSSGKCLKT--------LKGHSNYVFCCNFNPQSNLIV 126
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ---I 216
P + + P G I +A D+ WD + + GH + +CI A S I
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 217 VTGSEDGTARIWDCKSGKCIKVI 239
V+GSED IW+ ++ + ++ +
Sbjct: 256 VSGSEDNLVYIWNLQTKEIVQKL 278
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSR-IKMVFKGHSDYLHCIVARNSTNQIVTGSE 221
+A+ + G I S++ D WD S + +K + + + + + I+ +
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 215
Query: 222 DGTARIWDCKSGKCIKVIDPVKDKQ 246
D T ++WD GKC+K K+++
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEK 240
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS--EDGTARIW 228
G I S + D+ Y W++++ I +GH+D + + N I + + D T +++
Sbjct: 252 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311
Query: 229 --DC 230
DC
Sbjct: 312 KSDC 315
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
+A + SA+ D WDV S + KGHS+Y+ C +N IV+GS D +
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 225 ARIWDCKSGKCIKVI----DPV 242
RIWD K+G C+K + DPV
Sbjct: 134 VRIWDVKTGMCLKTLPAHSDPV 155
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%)
Query: 168 DPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARI 227
+PQ I S + D WDV++ HSD + + + IV+ S DG RI
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 228 WDCKSGKCIKVI 239
WD SG+C+K +
Sbjct: 179 WDTASGQCLKTL 190
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED 222
+++ P G + S++ D W + + GH + + + +N +V+ S+D
Sbjct: 30 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD 89
Query: 223 GTARIWDCKSGKCIKVI 239
T +IWD SGKC+K +
Sbjct: 90 KTLKIWDVSSGKCLKTL 106
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ---I 216
P + + P G I +A D+ WD + + GH + +CI A S I
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 217 VTGSEDGTARIWDCKSGKCIK 237
V+GSED IW+ ++ + ++
Sbjct: 256 VSGSEDNMVYIWNLQTKEIVQ 276
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS--EDGTARIW 228
G I S + D+ Y W++++ I +GH+D + + N I + + D T ++W
Sbjct: 252 GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Query: 229 --DC 230
DC
Sbjct: 312 KSDC 315
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSR-IKMVFKGHSDYLHCIVARNSTNQIVTGSE 221
+A+ + G I S++ D WD S + +K + + + + + I+ +
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 215
Query: 222 DGTARIWDCKSGKCIKVIDPVKDKQ 246
D ++WD GKC+K K+++
Sbjct: 216 DNDLKLWDYSKGKCLKTYTGHKNEK 240
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
+A + SA+ D WDV S + KGHS+Y+ C +N IV+GS D +
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 225 ARIWDCKSGKCIKVI----DPV 242
RIWD K+G C+K + DPV
Sbjct: 134 VRIWDVKTGMCLKTLPAHSDPV 155
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%)
Query: 168 DPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARI 227
+PQ I S + D WDV++ HSD + + + IV+ S DG RI
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 228 WDCKSGKCIKVI 239
WD SG+C+K +
Sbjct: 179 WDTASGQCLKTL 190
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED 222
+++ P G + S++ D W + + GH + + + +N +V+ S+D
Sbjct: 30 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD 89
Query: 223 GTARIWDCKSGKCIKVI 239
T +IWD SGKC+K +
Sbjct: 90 KTLKIWDVSSGKCLKTL 106
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ---I 216
P + + P G I +A D+ WD + + GH + +CI A S I
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 217 VTGSEDGTARIWDCKSGKCIK 237
V+GSED IW+ ++ + ++
Sbjct: 256 VSGSEDNMVYIWNLQTKEIVQ 276
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSR-IKMVFKGHSDYLHCIVARNSTNQIVTGSE 221
+A+ + G I S++ D WD S + +K + + + + + I+ +
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 215
Query: 222 DGTARIWDCKSGKCIKVIDPVKDKQ 246
D T ++WD GKC+K K+++
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEK 240
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS--EDGTARIW 228
G I S + D+ Y W++++ I +GH+D + + N I + + D T ++W
Sbjct: 252 GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Query: 229 --DC 230
DC
Sbjct: 312 KSDC 315
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 164 AIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG 223
++ P G + + A D WD+E+ +I M+ +GH ++ + S +++V+GS D
Sbjct: 128 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR 187
Query: 224 TARIWDCKSGKC 235
T RIWD ++G+C
Sbjct: 188 TVRIWDLRTGQC 199
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 30/72 (41%)
Query: 169 PQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIW 228
P G + S +GD WD+ + + + V+ I GS D R+W
Sbjct: 175 PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW 234
Query: 229 DCKSGKCIKVID 240
D ++G ++ +D
Sbjct: 235 DSETGFLVERLD 246
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/81 (20%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 171 GGAIFSAAGDSCAYCWDVESSRIK------------MVFKGHSDYLHCIVARNSTNQIVT 218
G ++ S + D W+++++ K + + GH D++ + + I++
Sbjct: 268 GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS 327
Query: 219 GSEDGTARIWDCKSGKCIKVI 239
GS+D WD KSG + ++
Sbjct: 328 GSKDRGVLFWDKKSGNPLLML 348
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 164 AIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNST------NQIV 217
++A I S + D WD +S ++ +GH + + + N + N
Sbjct: 315 SVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 374
Query: 218 TGSEDGTARIWDCK 231
TGS D ARIW K
Sbjct: 375 TGSGDCKARIWKYK 388
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 164 AIAVDPQGGAIFSAAG-DSCAYCWDVESSRIKMVF-------KGHSDYLHCIVARNSTNQ 215
+AV P G +A D WD E+ + GH D ++ +V
Sbjct: 211 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS 270
Query: 216 IVTGSEDGTARIWDCKSG 233
+V+GS D + ++W+ ++
Sbjct: 271 VVSGSLDRSVKLWNLQNA 288
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%)
Query: 157 SPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQI 216
S P A+A+ P FS D WD+ + + F+GH+D CI N ++
Sbjct: 139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKL 198
Query: 217 VTGSEDGTARIWDCKSGKCIKVID 240
TG D T R WD + G+ ++ D
Sbjct: 199 WTGGLDNTVRSWDLREGRQLQQHD 222
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 166 AVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTA 225
VD I SA+GD W+ + GH + C+ R+ +V+GS D T
Sbjct: 261 VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL--VVSGSSDNTI 318
Query: 226 RIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLD 260
R+WD + G C++V L+G V CI D
Sbjct: 319 RLWDIECGACLRV--------LEGHEELVRCIRFD 345
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 174 IFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWD 229
+ S + D+ WD+E V +GH + + CI R +IV+G+ DG ++WD
Sbjct: 309 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI--RFDNKRIVSGAYDGKIKVWD 362
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 174 IFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG 233
I S D+ WD + K + GH+ + C+ + I+TGS D T R+WD +G
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL--QYDERVIITGSSDSTVRVWDVNTG 203
Query: 234 KCIKVI 239
+ + +
Sbjct: 204 EMLNTL 209
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 174 IFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHC--IVARNSTNQIVTGSEDGTARIWDCK 231
I +A+GD WDVES ++ F GH + C + + N V+G D A +WD +
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR 228
Query: 232 SGKCIKVID 240
SG+C++ +
Sbjct: 229 SGQCVQAFE 237
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 200 HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIK 237
H++YL NS QI+T S DGT +WD +SG+ ++
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQ 190
Score = 34.3 bits (77), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 34/74 (45%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
+A G S D A WD+ S + F+ H ++ + S + +GS+D T
Sbjct: 204 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT 263
Query: 225 ARIWDCKSGKCIKV 238
R++D ++ + + +
Sbjct: 264 CRLYDLRADREVAI 277
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 171 GGAIFSAAGDSCAYCWDV-ESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIW 228
G +F+ D WDV + SR+ ++F GH + + + +GS D T R+W
Sbjct: 296 GRLLFAGYNDYTINVWDVLKGSRVSILF-GHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
Query: 174 IFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG 233
I S + D W+ E+ GH+ + C+ ++V+GS D T R+WD ++G
Sbjct: 172 IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETG 229
Query: 234 KCIKVIDPVKDKQLKGVISCVSCITLDA 261
+C+ V L G ++ V C+ D
Sbjct: 230 QCLHV--------LMGHVAAVRCVQYDG 249
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE 221
N ++ G + S + D+ WDVE+ GH + ++ N +V+G+
Sbjct: 280 NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNA 337
Query: 222 DGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS 262
D T +IWD K+G+C++ + Q S V+C+ + +
Sbjct: 338 DSTVKIWDIKTGQCLQTLQGPNKHQ-----SAVTCLQFNKN 373
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 174 IFSAAGDSCAYCWDVESSRIKMVFKG---HSDYLHCIVARNSTNQIVTGSEDGTARIWDC 230
+ S DS WD+++ + +G H + C+ + + N ++T S+DGT ++WD
Sbjct: 332 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL--QFNKNFVITSSDDGTVKLWDL 389
Query: 231 KSGKCIKVIDPVKDKQLKGVI 251
K+G+ I+ + ++ GV+
Sbjct: 390 KTGEFIRNLVTLESGGSGGVV 410
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 167 VDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTAR 226
V G + S A D WD E+ +GH++ ++ + + +V+GS D + R
Sbjct: 245 VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIR 302
Query: 227 IWDCKSGKCIKVI 239
+WD ++G CI +
Sbjct: 303 VWDVETGNCIHTL 315
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 196 VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239
V KGH D++ + N+IV+GS+D T ++W +GKC++ +
Sbjct: 113 VLKGHDDHV-ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL 155
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 174 IFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG 233
+ S + D+ WD+E+ + V GH + C+ + ++V+G+ D ++WD ++
Sbjct: 212 VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV--QYDGRRVVSGAYDFMVKVWDPETE 269
Query: 234 KCIKVI 239
C+ +
Sbjct: 270 TCLHTL 275
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDC 230
G I S + D+ W + + GH+ + R+ N I++GS D T ++W+
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNA 186
Query: 231 KSGKCIKVIDPVKDKQLKGVISCVSCITL 259
++G+CI L G S V C+ L
Sbjct: 187 ETGECIHT--------LYGHTSTVRCMHL 207
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 28/159 (17%)
Query: 84 GFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVK---P 140
G L GH+G + G + LLLS D + W+ L G+ K P
Sbjct: 11 GTLEGHNGWVTSLATSAGQPN-LLLSASRDKTLISWK------------LTGDDQKFGVP 57
Query: 141 VLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGH 200
V H H + ++ + D G SA+ D WDV + F GH
Sbjct: 58 VRSFKGHSH---------IVQDCTLTAD--GAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 201 SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239
+ + + I++GS D T ++W K G+C+ +
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 159 VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVT 218
VP A D I SA D W++ +I+ F GH+ ++ + A I +
Sbjct: 157 VPNEKA---DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS 213
Query: 219 GSEDGTARIWDCKSGKCIKVI 239
+DG +W+ + K + +
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTL 234
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 28/159 (17%)
Query: 84 GFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVK---P 140
G L GH+G + G + LLLS D + W+ L G+ K P
Sbjct: 11 GTLEGHNGWVTSLATSAGQPN-LLLSASRDKTLISWK------------LTGDDQKFGVP 57
Query: 141 VLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGH 200
V H H + ++ + D G SA+ D WDV + F GH
Sbjct: 58 VRSFKGHSH---------IVQDCTLTAD--GAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 201 SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239
+ + + I++GS D T ++W K G+C+ +
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 159 VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVT 218
VP A D I SA D W++ +I+ F GH+ ++ + A I +
Sbjct: 157 VPNEKA---DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS 213
Query: 219 GSEDGTARIWDCKSGKCIKVI 239
+DG +W+ + K + +
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTL 234
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 28/159 (17%)
Query: 84 GFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVK---P 140
G L GH+G + G + LLLS D + W+ L G+ K P
Sbjct: 5 GTLEGHNGWVTSLATSAGQPN-LLLSASRDKTLISWK------------LTGDDQKFGVP 51
Query: 141 VLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGH 200
V H H + ++ + D G SA+ D WDV + F GH
Sbjct: 52 VRSFKGHSH---------IVQDCTLTAD--GAYALSASWDKTLRLWDVATGETYQRFVGH 100
Query: 201 SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239
+ + + I++GS D T ++W K G+C+ +
Sbjct: 101 KSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 138
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 159 VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVT 218
VP A D I SA D W++ +I+ F GH+ ++ + A I +
Sbjct: 151 VPNEKA---DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS 207
Query: 219 GSEDGTARIWDCKSGKCIKVI 239
+DG +W+ + K + +
Sbjct: 208 AGKDGEIMLWNLAAKKAMYTL 228
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 28/159 (17%)
Query: 84 GFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVK---P 140
G L GH+G + G + LLLS D + W+ L G+ K P
Sbjct: 11 GTLEGHNGWVTSLATSAGQPN-LLLSASRDKTLISWK------------LTGDDQKFGVP 57
Query: 141 VLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGH 200
V H H + ++ + D G SA+ D WDV + F GH
Sbjct: 58 VRSFKGHSH---------IVQDCTLTAD--GAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 201 SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239
+ + + I++GS D T ++W K G+C+ +
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 159 VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVT 218
VP A D I SA D W++ +I+ F GH+ ++ + A I +
Sbjct: 157 VPNEKA---DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS 213
Query: 219 GSEDGTARIWDCKSGKCIKVI 239
+DG +W+ + K + +
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTL 234
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 28/159 (17%)
Query: 84 GFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVK---P 140
G L GH+G + G + LLLS D + W+ L G+ K P
Sbjct: 11 GTLEGHNGWVTSLATSAGQPN-LLLSASRDKTLISWK------------LTGDDQKFGVP 57
Query: 141 VLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGH 200
V H H + ++ + D G SA+ D WDV + F GH
Sbjct: 58 VRSFKGHSH---------IVQDCTLTAD--GAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 201 SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239
+ + + I++GS D T ++W K G+C+ +
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 159 VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVT 218
VP A D I SA D W++ +I+ F GH+ ++ + A I +
Sbjct: 157 VPNEKA---DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS 213
Query: 219 GSEDGTARIWDCKSGKCIKVI 239
+DG +W+ + K + +
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTL 234
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 66/170 (38%), Gaps = 32/170 (18%)
Query: 86 LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLV 145
L GH D+ F + LL SC D I W ++ F + + +
Sbjct: 146 LKGHTDSVQDISF--DHSGKLLASCSADMTIKLWDFQGF--------------ECIRTMH 189
Query: 146 NHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLH 205
H H +++++ P G I SA+ D W+V++ F GH +++
Sbjct: 190 GHDHNV-----------SSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR 238
Query: 206 CIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVS 255
+ I + S D T R+W + +C + ++ + V+ C+S
Sbjct: 239 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL-----REHRHVVECIS 283
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 154 GALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNST 213
G SPV + P + SA+ D+ WD E+ + KGH+D + I +S
Sbjct: 106 GHRSPV---TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 214 NQIVTGSEDGTARIWDCKSGKCIKVI 239
+ + S D T ++WD + +CI+ +
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTM 188
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/146 (19%), Positives = 64/146 (43%), Gaps = 6/146 (4%)
Query: 96 VKFYGGNEDALLL-SCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWG 154
V+ N+D L+ SC +D + W + + + V++ ++ + +
Sbjct: 237 VRMVRPNQDGTLIASCSNDQTVRVW-----VVATKECKAELREHRHVVECISWAPESSYS 291
Query: 155 ALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTN 214
++S + G + S + D WDV + M GH +++ ++ +
Sbjct: 292 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK 351
Query: 215 QIVTGSEDGTARIWDCKSGKCIKVID 240
I++ ++D T R+WD K+ +C+K ++
Sbjct: 352 FILSCADDKTLRVWDYKNKRCMKTLN 377
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDC 230
G I S A D WD ++ R H ++ + + +VTGS D T ++W+C
Sbjct: 350 GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409
Query: 231 K 231
+
Sbjct: 410 R 410
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 194 KMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISC 253
K GH + ++ + +V+ SED T ++WD ++G ++ LKG
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF--------ERTLKGHTDS 152
Query: 254 VSCITLDASESWLVRVRATNYVILF 278
V I+ D S L A + L+
Sbjct: 153 VQDISFDHSGKLLASCSADMTIKLW 177
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 28/159 (17%)
Query: 84 GFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVK---P 140
G L GH+G + G + LLLS D + W+ L G+ K P
Sbjct: 11 GTLEGHNGWVTSLATSAGQPN-LLLSASRDKTLISWK------------LTGDDQKFGVP 57
Query: 141 VLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGH 200
V H H + ++ + D G SA+ D WDV + F GH
Sbjct: 58 VRSFKGHSH---------IVQDCTLTAD--GAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 201 SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239
+ + + I++GS D T ++W K G+C+ +
Sbjct: 107 KSDVXSVDIDKKASXIISGSRDKTIKVWTIK-GQCLATL 144
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 159 VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVT 218
VP A D I SA D W++ +I+ F GH+ ++ + A I +
Sbjct: 157 VPNEKA---DDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS 213
Query: 219 GSEDGTARIWDCKSGKC 235
+DG +W+ + K
Sbjct: 214 AGKDGEIXLWNLAAKKA 230
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 36/74 (48%)
Query: 166 AVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTA 225
V G + S + D+ WDV + + GH+D ++ + + + ++ S D T
Sbjct: 275 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTI 334
Query: 226 RIWDCKSGKCIKVI 239
RIWD ++G+ + +
Sbjct: 335 RIWDLENGELMYTL 348
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 169 PQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHC--IVARNSTNQIVTGSEDGTAR 226
GG + S + D WD++ VF+GH+ + C IV + IVTGS D T
Sbjct: 171 AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230
Query: 227 IW 228
+W
Sbjct: 231 VW 232
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 176 SAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDC 230
SA+ D+ WD+E+ + +GH+ + + R S +V+ + DG+ R WD
Sbjct: 327 SASMDTTIRIWDLENGELMYTLQGHTALVGLL--RLSDKFLVSAAADGSIRGWDA 379
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 23/95 (24%)
Query: 174 IFSAAGDSCAYCWDVESSRIKMVFKGHS------DYLHCIVARNSTNQIVTGSEDGTARI 227
+ + A D +D + + + GH Y H + +V+GS D T R+
Sbjct: 135 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI-------LVSGSTDRTVRV 187
Query: 228 WDCKSGKC----------IKVIDPVKDKQLKGVIS 252
WD K G C ++ +D V+ K +K +++
Sbjct: 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT 222
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 196 VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDK 245
V +GH + + N +V+GS D T +WD KC+ ++ D+
Sbjct: 265 VLRGHMASVRTVSGHG--NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR 312
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%)
Query: 166 AVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTA 225
V G + S + D+ WDV + + GH+D ++ + + + ++ S D T
Sbjct: 275 TVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTI 334
Query: 226 RIWDCKSGKC 235
RIWD ++G+
Sbjct: 335 RIWDLENGEL 344
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 169 PQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHC--IVARNSTNQIVTGSEDGTAR 226
GG + S + D WD++ VF+GH+ + C IV + IVTGS D T
Sbjct: 171 AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230
Query: 227 IW 228
+W
Sbjct: 231 VW 232
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 168 DPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARI 227
D + SA+ D+ WD+E+ + +GH+ + + R S +V+ + DG+ R
Sbjct: 319 DHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLL--RLSDKFLVSAAADGSIRG 376
Query: 228 WDC 230
WD
Sbjct: 377 WDA 379
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 10/47 (21%)
Query: 216 IVTGSEDGTARIWDCKSGKC----------IKVIDPVKDKQLKGVIS 252
+V+GS D T R+WD K G C ++ +D V+ K +K +++
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT 222
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 196 VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDK 245
V +GH + + N +V+GS D T +WD KC+ ++ D+
Sbjct: 265 VLRGHXASVRTVSGHG--NIVVSGSYDNTLIVWDVAQXKCLYILSGHTDR 312
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 164 AIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG 223
++++ P S A D+ A WDV + F GH ++ I + N TGS+D
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 224 TARIWDCKSGK 234
T R++D ++ +
Sbjct: 249 TCRLFDLRADQ 259
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 58/148 (39%), Gaps = 32/148 (21%)
Query: 86 LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLV 145
L GH Y + + G + LLLS DG++ W +T +KV H P+
Sbjct: 51 LRGHLAKIYAMHW--GTDSRLLLSASQDGKLI--IWDSYTTNKV-------HAIPL---- 95
Query: 146 NHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS----RIKMVFKGHS 201
+ W A P G + D+ +++++ R+ GH+
Sbjct: 96 ----RSSWVM--------TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT 143
Query: 202 DYLHCIVARNSTNQIVTGSEDGTARIWD 229
YL C + NQIVT S D T +WD
Sbjct: 144 GYLSCCRFLDD-NQIVTSSGDTTCALWD 170
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 164 AIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG 223
++++ P S A D+ A WDV + F GH ++ I + N TGS+D
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 224 TARIWDCKSGK 234
T R++D ++ +
Sbjct: 249 TCRLFDLRADQ 259
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%)
Query: 174 IFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG 233
I +++GD+ WD+E+ + F GH+ + + T V+G+ D +A++WD + G
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 234 KCIKVI 239
C +
Sbjct: 217 MCRQTF 222
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 58/148 (39%), Gaps = 32/148 (21%)
Query: 86 LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLV 145
L GH Y + + G + LL+S DG++ W +T +KV H P+
Sbjct: 51 LRGHLAKIYAMHW--GTDSRLLVSASQDGKLI--IWDSYTTNKV-------HAIPL---- 95
Query: 146 NHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS----RIKMVFKGHS 201
+ W A P G + D+ +++++ R+ GH+
Sbjct: 96 ----RSSWVM--------TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT 143
Query: 202 DYLHCIVARNSTNQIVTGSEDGTARIWD 229
YL C + NQIVT S D T +WD
Sbjct: 144 GYLSCCRFLDD-NQIVTSSGDTTCALWD 170
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 164 AIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG 223
++++ P S A D+ A WDV + F GH ++ I + N TGS+D
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 224 TARIWDCKSGK 234
T R++D ++ +
Sbjct: 249 TCRLFDLRADQ 259
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%)
Query: 174 IFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG 233
I +++GD+ WD+E+ + F GH+ + + T V+G+ D +A++WD + G
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 234 KCIKVI 239
C +
Sbjct: 217 MCRQTF 222
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 58/148 (39%), Gaps = 32/148 (21%)
Query: 86 LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLV 145
L GH Y + + G + LL+S DG++ W +T +KV H P+
Sbjct: 51 LRGHLAKIYAMHW--GTDSRLLVSASQDGKLI--IWDSYTTNKV-------HAIPL---- 95
Query: 146 NHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS----RIKMVFKGHS 201
+ W A P G + D+ +++++ R+ GH+
Sbjct: 96 ----RSSWVM--------TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT 143
Query: 202 DYLHCIVARNSTNQIVTGSEDGTARIWD 229
YL C + NQIVT S D T +WD
Sbjct: 144 GYLSCCRFLDD-NQIVTSSGDTTCALWD 170
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 164 AIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG 223
++++ P S A D+ A WDV + F GH ++ I + N TGS+D
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 224 TARIWDCKSGK 234
T R++D ++ +
Sbjct: 249 TCRLFDLRADQ 259
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 58/148 (39%), Gaps = 32/148 (21%)
Query: 86 LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLV 145
L GH Y + + G + LLLS DG++ W +T +KV H P+
Sbjct: 51 LRGHLAKIYAMHW--GTDSRLLLSASQDGKLI--IWDSYTTNKV-------HAIPL---- 95
Query: 146 NHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS----RIKMVFKGHS 201
+ W A P G + D+ +++++ R+ GH+
Sbjct: 96 ----RSSWVM--------TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT 143
Query: 202 DYLHCIVARNSTNQIVTGSEDGTARIWD 229
YL C + NQIVT S D T +WD
Sbjct: 144 GYLSCCRFLDD-NQIVTSSGDTTCALWD 170
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 164 AIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG 223
++++ P S A D+ A WDV + F GH ++ I + N TGS+D
Sbjct: 200 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 259
Query: 224 TARIWDCKSGK 234
T R++D ++ +
Sbjct: 260 TCRLFDLRADQ 270
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%)
Query: 174 IFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG 233
I +++GD+ WD+E+ + F GH+ + + T V+G+ D +A++WD + G
Sbjct: 168 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 227
Query: 234 KCIKVI 239
C +
Sbjct: 228 MCRQTF 233
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 58/148 (39%), Gaps = 32/148 (21%)
Query: 86 LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLV 145
L GH Y + + G + LL+S DG++ W +T +KV H P+
Sbjct: 62 LRGHLAKIYAMHW--GTDSRLLVSASQDGKLI--IWDSYTTNKV-------HAIPL---- 106
Query: 146 NHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS----RIKMVFKGHS 201
+ W A P G + D+ +++++ R+ GH+
Sbjct: 107 ----RSSWVM--------TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT 154
Query: 202 DYLHCIVARNSTNQIVTGSEDGTARIWD 229
YL C + NQIVT S D T +WD
Sbjct: 155 GYLSCCRFLDD-NQIVTSSGDTTCALWD 181
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 174 IFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG 233
I S D+ WD+ + R+ KGH++Y+ + + + +DG AR+WD G
Sbjct: 169 IVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKG 228
Query: 234 KCI 236
+ +
Sbjct: 229 EAL 231
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
+A+ G SA+ D W++++ + + F GH+ + + QIV+G D
Sbjct: 73 VALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNA 132
Query: 225 ARIWDCKSGKCIKVI 239
R+W+ K G+C+ +
Sbjct: 133 LRVWNVK-GECMHTL 146
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 197 FKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC-IKVIDPVKD 244
+GHS ++ + N+ N V+ S D + R+W+ ++G+C K + KD
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKD 111
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 73/195 (37%), Gaps = 29/195 (14%)
Query: 63 SKLPLGLSNSKVQQLLG--IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWR 120
S + LG N Q ++ + G L GH+G + D ++LS D I W+
Sbjct: 9 SGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPD-MILSASRDKTIIMWK 67
Query: 121 W-KEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG 179
++ T +P H V D+V + G S +
Sbjct: 68 LTRDETNYGIPQRALRGHSHFVSDVV---------------------ISSDGQFALSGSW 106
Query: 180 DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239
D WD+ + F GH+ + + + QIV+GS D T ++W+ G C
Sbjct: 107 DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL-GVCKYT- 164
Query: 240 DPVKDKQLKGVISCV 254
V+D+ +SCV
Sbjct: 165 --VQDESHSEWVSCV 177
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 174 IFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG 233
I S D W++ + ++K GH+ YL+ + + +G +DG A +WD G
Sbjct: 188 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 247
Query: 234 KCIKVID 240
K + +D
Sbjct: 248 KHLYTLD 254
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 131 INLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVES 190
+ QG+H+K + L H+ P+ + + + +G +FS + DS A W +
Sbjct: 16 LYFQGSHMKAI-KLTGHER--------PLTQ---VKYNKEGDLLFSCSKDSSASVWYSLN 63
Query: 191 SRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI 236
GH+ + I T VTGS D + ++WD +G+C+
Sbjct: 64 GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCV 109
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 174 IFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG 233
I S D W++ + ++K GH+ YL+ + + +G +DG A +WD G
Sbjct: 165 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 224
Query: 234 KCIKVID 240
K + +D
Sbjct: 225 KHLYTLD 231
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 64/172 (37%), Gaps = 27/172 (15%)
Query: 84 GFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRW-KEFTESKVPINLQGNHVKPVL 142
G L GH+G + D ++LS D I W+ ++ T +P H V
Sbjct: 9 GTLKGHNGWVTQIATTPQFPD-MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS 67
Query: 143 DLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSD 202
D+V + G S + D WD+ + F GH+
Sbjct: 68 DVV---------------------ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK 106
Query: 203 YLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCV 254
+ + + QIV+GS D T ++W+ G C V+D+ +SCV
Sbjct: 107 DVLSVAFSSDNRQIVSGSRDKTIKLWNTL-GVCKYT---VQDESHSEWVSCV 154
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 169 PQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIW 228
P + +A+ D WD ++ +GH + V + I++GSEDGT +IW
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 229 DCKSGKCIKVID 240
+ + K K ++
Sbjct: 256 NSSTYKVEKTLN 267
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/67 (19%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 197 FKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSC 256
F+ H DY+ I + +++GS+D T ++W+ ++ + ++ +G V C
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL-------EQTFEGHEHFVMC 145
Query: 257 ITLDASE 263
+ + +
Sbjct: 146 VAFNPKD 152
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 169 PQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIW 228
P + +A+ D WD ++ +GH + V + I++GSEDGT +IW
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 229 DCKSGKCIKVID 240
+ + K K ++
Sbjct: 256 NSSTYKVEKTLN 267
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/67 (19%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 197 FKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSC 256
F+ H DY+ I + +++GS+D T ++W+ ++ + ++ +G V C
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL-------EQTFEGHEHFVMC 145
Query: 257 ITLDASE 263
+ + +
Sbjct: 146 VAFNPKD 152
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 3/120 (2%)
Query: 124 FTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAI---AVDPQGGAIFSAAGD 180
+ ++K+ +G+ + L+ +N + L P +A+ G I S D
Sbjct: 584 YRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGAD 643
Query: 181 SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240
+ E+ + K H D + C + + I T S D +IWD +GK + D
Sbjct: 644 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 703
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 174 IFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIV--TGSEDGTARIWDCK 231
I + + D WD + ++ + HS+ ++C N +N ++ TGS D ++WD
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 232 SGKC 235
+C
Sbjct: 739 QKEC 742
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 177 AAGDSCAYCWDVESSRIKMV-FKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK 231
A C W+++S R+K+ +GH ++H ++ + +T S+D T R+W+ K
Sbjct: 865 ALSQYCVELWNIDS-RLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 919
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
Query: 170 QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHS-DYLHCIVARNSTNQIVTGSEDGTARIW 228
Q + S + D W+V + RI+ F H L C ++ ++T + + S D TA+IW
Sbjct: 1061 QDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT-KFSSTSADKTAKIW 1119
Query: 229 DCKSGKCIKVIDPVKDKQLKGVISCVSC 256
++ P+ +LKG CV C
Sbjct: 1120 S------FDLLSPL--HELKGHNGCVRC 1139
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 29/77 (37%)
Query: 166 AVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTA 225
A+ S + D A W + KGH+ + C + TG ++G
Sbjct: 1099 AISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEI 1158
Query: 226 RIWDCKSGKCIKVIDPV 242
RIW+ G+ + P+
Sbjct: 1159 RIWNVSDGQLLHSCAPI 1175
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 18/114 (15%)
Query: 176 SAAGDSCAYCWDVESSRIKMVFKGHSDYL-HCIVARNSTNQIVTGSEDGTARIWDCKSGK 234
+ + D WD+ + GH++ + HC + + + + S DGT R+WD +S
Sbjct: 725 TGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSAN 783
Query: 235 CIKVI----------DPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278
K I DP +D ++ V C + A ++ V A N V+LF
Sbjct: 784 ERKSINVKRFFLSSEDPPEDVEV-----IVKCCSWSADGDKII-VAAKNKVLLF 831
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 3/120 (2%)
Query: 124 FTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAI---AVDPQGGAIFSAAGD 180
+ ++K+ +G+ + L+ +N + L P +A+ G I S D
Sbjct: 577 YRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGAD 636
Query: 181 SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240
+ E+ + K H D + C + + I T S D +IWD +GK + D
Sbjct: 637 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 696
Score = 34.3 bits (77), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 174 IFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIV--TGSEDGTARIWDCK 231
I + + D WD + ++ + HS+ ++C N +N ++ TGS D ++WD
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 232 SGKC 235
+C
Sbjct: 732 QKEC 735
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 177 AAGDSCAYCWDVESSRIKMV-FKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK 231
A C W+++S R+K+ +GH ++H ++ + +T S+D T R+W+ K
Sbjct: 858 ALSQYCVELWNIDS-RLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
Query: 170 QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHS-DYLHCIVARNSTNQIVTGSEDGTARIW 228
Q + S + D W+V + RI+ F H L C ++ ++T + + S D TA+IW
Sbjct: 1054 QDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT-KFSSTSADKTAKIW 1112
Query: 229 DCKSGKCIKVIDPVKDKQLKGVISCVSC 256
++ P+ +LKG CV C
Sbjct: 1113 S------FDLLSPL--HELKGHNGCVRC 1132
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 29/77 (37%)
Query: 166 AVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTA 225
A+ S + D A W + KGH+ + C + TG ++G
Sbjct: 1092 AISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEI 1151
Query: 226 RIWDCKSGKCIKVIDPV 242
RIW+ G+ + P+
Sbjct: 1152 RIWNVSDGQLLHSCAPI 1168
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 18/114 (15%)
Query: 176 SAAGDSCAYCWDVESSRIKMVFKGHSDYL-HCIVARNSTNQIVTGSEDGTARIWDCKSGK 234
+ + D WD+ + GH++ + HC + + + + S DGT R+WD +S
Sbjct: 718 TGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSAN 776
Query: 235 CIKVI----------DPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278
K I DP +D ++ V C + A ++ V A N V+LF
Sbjct: 777 ERKSINVKRFFLSSEDPPEDVEV-----IVKCCSWSADGDKII-VAAKNKVLLF 824
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 169 PQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIW 228
P + +A+ D WD ++ +GH + V + I++GSEDGT +IW
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 229 DCKSGKCIKVID 240
+ + K K ++
Sbjct: 256 NSSTYKVEKTLN 267
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/64 (20%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 197 FKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSC 256
F+ H DY+ I + +++GS+D T ++W+ ++ + ++ +G V C
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL-------EQTFEGHEHFVMC 145
Query: 257 ITLD 260
+ +
Sbjct: 146 VAFN 149
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 169 PQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIW 228
P + +A+ D WD ++ +GH + V + I++GSEDGT +IW
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 229 DCKSGKCIKVID 240
+ + K K ++
Sbjct: 256 NSSTYKVEKTLN 267
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/64 (20%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 197 FKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSC 256
F+ H DY+ I + +++GS+D T ++W+ ++ + ++ +G V C
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL-------EQTFEGHEHFVMC 145
Query: 257 ITLD 260
+ +
Sbjct: 146 VAFN 149
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 35/82 (42%)
Query: 159 VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVT 218
V E + P G A+ S++ D W V+ GH + I + +++
Sbjct: 136 VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLS 195
Query: 219 GSEDGTARIWDCKSGKCIKVID 240
S DGT R+W+C +G I +
Sbjct: 196 ASLDGTIRLWECGTGTTIHTFN 217
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 35/82 (42%)
Query: 159 VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVT 218
V E + P G A+ S++ D W V+ GH + I + +++
Sbjct: 139 VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLS 198
Query: 219 GSEDGTARIWDCKSGKCIKVID 240
S DGT R+W+C +G I +
Sbjct: 199 ASLDGTIRLWECGTGTTIHTFN 220
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 27/165 (16%)
Query: 86 LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPI---NLQGNHVKPVL 142
L GH G A ++ E L+ GD + W T ++ I H VL
Sbjct: 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVL---WDVTTGQRISIFGSEFPSGHTADVL 209
Query: 143 DLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVE-SSRIKMVFKGHS 201
L +++ + N I S + D+ WD+ +SR + GH
Sbjct: 210 SL----------SINSLNANMFI----------SGSCDTTVRLWDLRITSRAVRTYHGHE 249
Query: 202 DYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQ 246
++ + + TGS+DGT R++D ++G ++V + D+
Sbjct: 250 GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN 294
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 24/146 (16%)
Query: 87 HGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVN 146
HGH+G VKF+ D G D C + + LQ + +P D +
Sbjct: 246 HGHEGDINSVKFF---PDGQRFGTGSDDGTC-----RLFDMRTGHQLQVYNREP--DRND 295
Query: 147 HQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKM----VFKGHSD 202
++ +P ++A G +F+ + Y WD + + + + H
Sbjct: 296 NE----------LPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG 345
Query: 203 YLHCIVARNSTNQIVTGSEDGTARIW 228
+ C+ + + + TGS D +IW
Sbjct: 346 RISCLGLSSDGSALCTGSWDKNLKIW 371
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 174 IFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG 233
I SA+ D W++ + +++ GH+ Y+ + + +G +DG +WD G
Sbjct: 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG 593
Query: 234 KCIKVID 240
K + ++
Sbjct: 594 KKLYSLE 600
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 174 IFSAAGDSCAYCW-----DVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIW 228
I SA+ D W D + GHS ++ +V + ++GS DG R+W
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457
Query: 229 DCKSG 233
D +G
Sbjct: 458 DLAAG 462
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
+ + G S + D WD+ + F GH+ + + QIV+ S D T
Sbjct: 436 VVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRT 495
Query: 225 ARIWDCKSGKCIKVI 239
++W+ G+C I
Sbjct: 496 IKLWNT-LGECKYTI 509
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
+A P G I SA+ D W+ + ++ GHS ++ + R I + S+D T
Sbjct: 227 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKT 285
Query: 225 ARIWDCKSGKCIKVI 239
++W+ ++G+ ++ +
Sbjct: 286 VKLWN-RNGQLLQTL 299
Score = 33.9 bits (76), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 30/154 (19%)
Query: 86 LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLV 145
L GH + V F + + S DD + W N G H++ L
Sbjct: 299 LTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLW------------NRNGQHLQT---LT 341
Query: 146 NHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLH 205
H WG +A P G I SA+ D W+ + ++ GHS +
Sbjct: 342 GHS-SSVWG----------VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVR 389
Query: 206 CIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239
+ I + S+D T ++W+ ++G+ ++ +
Sbjct: 390 GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL 422
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
+A P G I SA+ D W+ + ++ GHS + + I + S+D T
Sbjct: 63 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 121
Query: 225 ARIWDCKSGKCIKVI 239
++W+ ++G+ ++ +
Sbjct: 122 VKLWN-RNGQLLQTL 135
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
+A P G I SA+ D W+ + ++ GHS + + I + S+D T
Sbjct: 186 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 244
Query: 225 ARIWDCKSGKCIKVI 239
++W+ ++G+ ++ +
Sbjct: 245 VKLWN-RNGQLLQTL 258
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
+A P G I SA+ D W+ + ++ GHS + + I + S+D T
Sbjct: 473 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 531
Query: 225 ARIWDCKSGKCIKVI 239
++W+ ++G+ ++ +
Sbjct: 532 VKLWN-RNGQLLQTL 545
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED 222
N +A P G I SA+ D W+ + ++ GHS + + I + S+D
Sbjct: 266 NGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 324
Query: 223 GTARIWDCKSGKCIKVI 239
T ++W+ ++G+ ++ +
Sbjct: 325 KTVKLWN-RNGQHLQTL 340
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
+A P G I SA+ D W+ + ++ GHS + + I + S+D T
Sbjct: 22 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 80
Query: 225 ARIWDCKSGKCIKVI 239
++W+ ++G+ ++ +
Sbjct: 81 VKLWN-RNGQLLQTL 94
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
+A P I SA+ D W+ + ++ GHS + + I + S+D T
Sbjct: 432 VAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 490
Query: 225 ARIWDCKSGKCIKVI 239
++W+ ++G+ ++ +
Sbjct: 491 VKLWN-RNGQLLQTL 504
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
+A P G I SA+ D W+ + ++ GHS + + I + S D T
Sbjct: 514 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKT 572
Query: 225 ARIWD 229
++W+
Sbjct: 573 VKLWN 577
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%)
Query: 164 AIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG 223
+IA P G + S A D +D+ + ++ +GH+ + + + +VT S+DG
Sbjct: 169 SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG 228
Query: 224 TARIWDCK 231
+I+D +
Sbjct: 229 YIKIYDVQ 236
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHS--DYLHCIVARNSTNQIVTGSEDGTARIW 228
G +F+A+ D A WD+ S++ + + + +H I A N + ++TGS D T + W
Sbjct: 98 GSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSC-VMTGSWDKTLKFW 156
Query: 229 DCKSGKCIKVI 239
D +S + V+
Sbjct: 157 DTRSSNPMMVL 167
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 185 CWDVESS--RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID-- 240
CW+V+ S I + H+ + + + +++ T S D TA++WD S + I++
Sbjct: 68 CWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHD 127
Query: 241 -PVK 243
PVK
Sbjct: 128 APVK 131
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/220 (20%), Positives = 76/220 (34%), Gaps = 56/220 (25%)
Query: 30 RTVWGPSKDGSPDTIVIASSDGSIT--SYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLH 87
+TVW T++ +S D I ++ + CI FL
Sbjct: 1010 KTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCI----------------------FLR 1047
Query: 88 GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNH 147
GH D + +++ LLS DG + W + GN K D V H
Sbjct: 1048 GHQETVKDFRLL---KNSRLLSWSFDGTVKVWNI-----------ITGNKEK---DFVCH 1090
Query: 148 QHKGPWGALSPVPENNAIAVDPQGGA--IFSAAGDSCAYCWDVESSRIKMVFKGHSDYLH 205
Q ++ D A S + D A W + +GH+ +
Sbjct: 1091 Q-------------GTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVR 1137
Query: 206 CIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDK 245
C + + TG ++G RIW+ +G+ + + P+ ++
Sbjct: 1138 CSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEE 1177
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 169 PQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIW 228
PQ A C W+ +S +GH ++H ++ + +T S+D T R+W
Sbjct: 856 PQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLW 915
Query: 229 DCK 231
+ K
Sbjct: 916 ETK 918
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 3/120 (2%)
Query: 124 FTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAI---AVDPQGGAIFSAAGD 180
+ ++K+ + ++ L+ +N ++ L P +A+ G I S D
Sbjct: 583 YQQAKLQAKQEVDNGMLYLEWINKKNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGAD 642
Query: 181 SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240
+ E+ + K H D + C I T S D +IW+ +G+ + D
Sbjct: 643 KTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYD 702
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 174 IFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIV--TGSEDGTARIWDCK 231
I + + D W+ + + + HS+ ++C NS++ ++ TGS D ++WD
Sbjct: 678 IATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN 737
Query: 232 SGKC 235
+C
Sbjct: 738 QKEC 741
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 18/114 (15%)
Query: 176 SAAGDSCAYCWDVESSRIKMVFKGHSDYL-HCIVARNSTNQIVTGSEDGTARIWDCKSGK 234
+ + D WD+ + GH++ + HC + + + + S DGT ++WD S
Sbjct: 724 TGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD-KLLASCSADGTLKLWDATSAN 782
Query: 235 CIKVI----------DPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278
K I DP +D ++ ++ C S +++ + V A N + LF
Sbjct: 783 ERKSINVKQFFLNLEDPQEDMEV--IVKCCSW----SADGARIMVAAKNKIFLF 830
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 60/163 (36%), Gaps = 30/163 (18%)
Query: 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPI---NLQGNH 137
+PD L GH Y + + N + LLS DD IC W + I N+ H
Sbjct: 174 QPDLRLRGHQKEGYGLS-WNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGH 232
Query: 138 VKPVLDLVNHQ-HKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVE---SSRI 193
V D+ H H+ +G S A D WD +S+
Sbjct: 233 TAVVEDVAWHLLHESLFG---------------------SVADDQKLMIWDTRNNNTSKP 271
Query: 194 KMVFKGHSDYLHCIVARNSTNQIV-TGSEDGTARIWDCKSGKC 235
H+ ++C+ + I+ TGS D T +WD ++ K
Sbjct: 272 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 314
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 60/163 (36%), Gaps = 30/163 (18%)
Query: 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPI---NLQGNH 137
+PD L GH Y + + N + LLS DD IC W + I N+ H
Sbjct: 172 QPDLRLRGHQKEGYGLS-WNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGH 230
Query: 138 VKPVLDLVNHQ-HKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVE---SSRI 193
V D+ H H+ +G S A D WD +S+
Sbjct: 231 TAVVEDVAWHLLHESLFG---------------------SVADDQKLMIWDTRNNNTSKP 269
Query: 194 KMVFKGHSDYLHCIVARNSTNQIV-TGSEDGTARIWDCKSGKC 235
H+ ++C+ + I+ TGS D T +WD ++ K
Sbjct: 270 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 312
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 60/163 (36%), Gaps = 30/163 (18%)
Query: 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPI---NLQGNH 137
+PD L GH Y + + N + LLS DD IC W + I N+ H
Sbjct: 176 QPDLRLRGHQKEGYGLS-WNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGH 234
Query: 138 VKPVLDLVNHQ-HKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVE---SSRI 193
V D+ H H+ +G S A D WD +S+
Sbjct: 235 TAVVEDVAWHLLHESLFG---------------------SVADDQKLMIWDTRNNNTSKP 273
Query: 194 KMVFKGHSDYLHCIVARNSTNQIV-TGSEDGTARIWDCKSGKC 235
H+ ++C+ + I+ TGS D T +WD ++ K
Sbjct: 274 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 316
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 57/154 (37%), Gaps = 29/154 (18%)
Query: 86 LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLV 145
L H+ +D K +E+ L + D K + KV G H D+V
Sbjct: 138 LQAHNASVWDAKVVSFSENKFLTASADK------TIKLWQNDKVIKTFSGIHN----DVV 187
Query: 146 NHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLH 205
H L+ V + G S + D D + + ++GH +++
Sbjct: 188 RH--------LAVVDD----------GHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVY 229
Query: 206 CIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239
CI IV+ ED T RIW ++G +VI
Sbjct: 230 CIKLL-PNGDIVSCGEDRTVRIWSKENGSLKQVI 262
>pdb|1D06|A Chain A, Structural Basis Of Dimerization And Sensory Mechanisms
Of Oxygen- Sensing Domain Of Rhizobium Meliloti Fixl
Determined At 1.4a Resolution
pdb|1EW0|A Chain A, Crystal Structure Analysis Of The Sensor Domain Of
Rmfixl(Ferrous Form)
Length = 130
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 13/79 (16%)
Query: 15 KSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKV 74
+ +++ R+ R++ TV PD V++++DG+I S++ + G + +V
Sbjct: 8 EDVVRARDAHLRSILDTV--------PDATVVSATDGTIVSFNAAAV---RQFGYAEEEV 56
Query: 75 --QQLLGIEPDGFLHGHDG 91
Q L + P+ + H HDG
Sbjct: 57 IGQNLRILMPEPYRHEHDG 75
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQI-VTGSE 221
+ ++V G S + D C WD+ + ++ H+ + C+ A + + ++ SE
Sbjct: 131 STVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSE 190
Query: 222 DGTARIWDCKSGK 234
D +WD + K
Sbjct: 191 DNRILLWDTRCPK 203
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 74 VQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWR 120
V Q+ P G L GH GP ++F N+ LLLS DDG + W
Sbjct: 231 VYQITEKTPTGKLIGHHGPISVLEFNDTNK--LLLSASDDGTLRIWH 275
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 201 SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240
++ + C+ + N IVTG E+G R+W+ K+G + V++
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLN 146
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 44 IVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGF-----LHGHDGPAYDVKF 98
+VIA++ + ++ K S+ K ++ +E + L GH+GP + V +
Sbjct: 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 61
Query: 99 YGGNEDALLLSCGDDGRICGWR 120
+L SC DG++ W+
Sbjct: 62 AHPKFGTILASCSYDGKVMIWK 83
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 44 IVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGF-----LHGHDGPAYDVKF 98
+VIA++ + ++ K S+ K ++ +E + L GH+GP + V +
Sbjct: 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 61
Query: 99 YGGNEDALLLSCGDDGRICGWR 120
+L SC DG++ W+
Sbjct: 62 AHPKFGTILASCSYDGKVLIWK 83
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQI-VTGSEDG 223
++V G S D WD+ + + HS ++C+ A + I ++ EDG
Sbjct: 145 LSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDG 204
Query: 224 TARIWDCKSGKCIKVID 240
+WD + K ID
Sbjct: 205 RILLWDTRKPKPATRID 221
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 103 EDALLLSCGDDGRICGW 119
+D + LSCG+DGRI W
Sbjct: 193 KDTIFLSCGEDGRILLW 209
>pdb|3E1S|A Chain A, Structure Of An N-Terminal Truncation Of Deinococcus
Radiodurans Recd2
pdb|3GP8|A Chain A, Crystal Structure Of The Binary Complex Of Recd2 With Dna
pdb|3GPL|A Chain A, Crystal Structure Of The Ternary Complex Of Recd2 With Dna
And Adpnp
pdb|3GPL|B Chain B, Crystal Structure Of The Ternary Complex Of Recd2 With Dna
And Adpnp
Length = 574
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 10/50 (20%)
Query: 68 GLSNSKVQQLLGIEPDGFLHGHDGPA-YD------VKFYGGNEDALLLSC 110
G + S V +LLG P GF H H PA YD V G DAL+LS
Sbjct: 253 GRTASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG---DALMLSL 299
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 44 IVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGF-----LHGHDGPAYDVKF 98
+VIA++ + ++ K S+ K ++ +E + L GH+GP + V +
Sbjct: 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 63
Query: 99 YGGNEDALLLSCGDDGRICGWR 120
+L SC DG++ W+
Sbjct: 64 AHPKFGTILASCSYDGKVLIWK 85
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 167 VDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHS--DYLHCIVARNSTNQIVTGSEDGT 224
VD G + + A D+ Y W S I + + +Y+ + N + G+
Sbjct: 111 VDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE 170
Query: 225 ARIWDCKSGKCIK 237
++WD + K ++
Sbjct: 171 VQLWDVQQQKRLR 183
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 63/158 (39%), Gaps = 24/158 (15%)
Query: 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPV 141
PD L GH Y + + N LLS DD +C W IN G +
Sbjct: 171 PDLRLRGHQKEGYGLS-WNSNLSGHLLSASDDHTVCLWD----------IN-AGPKEGKI 218
Query: 142 LDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF-SAAGDSCAYCWDVES---SRIKMVF 197
+D K + S V E+ +A ++F S A D WD S S+ +
Sbjct: 219 VDA-----KAIFTGHSAVVED--VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLV 271
Query: 198 KGHSDYLHCIVARNSTNQIV-TGSEDGTARIWDCKSGK 234
H+ ++C+ + I+ TGS D T +WD ++ K
Sbjct: 272 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 309
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 167 VDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHS--DYLHCIVARNSTNQIVTGSEDGT 224
VD G + + A D+ Y W S I + + +Y+ + N + G+
Sbjct: 122 VDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE 181
Query: 225 ARIWDCKSGKCIK 237
++WD + K ++
Sbjct: 182 VQLWDVQQQKRLR 194
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 44 IVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGF-----LHGHDGPAYDVKF 98
+VIA++ ++ K S+ K ++ +E + L GH+GP + V +
Sbjct: 2 VVIANAHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 61
Query: 99 YGGNEDALLLSCGDDGRICGWR 120
+L SC DG++ W+
Sbjct: 62 AHPKFGTILASCSYDGKVXIWK 83
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 167 VDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHS--DYLHCIVARNSTNQIVTGSEDGT 224
VD G + + A D+ Y W S I + + +Y+ + N + G+
Sbjct: 31 VDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE 90
Query: 225 ARIWDCKSGKCIK 237
++WD + K ++
Sbjct: 91 VQLWDVQQQKRLR 103
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 103 EDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGP 152
+D LLLS G D +I W WK T + + +KP L N QH P
Sbjct: 251 KDYLLLSAGGDDKIFAWDWK--TGKNLSTFDYNSLIKPYL---NDQHLAP 295
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 63/158 (39%), Gaps = 24/158 (15%)
Query: 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPV 141
PD L GH Y + + N LLS DD +C W IN G +
Sbjct: 171 PDLRLRGHQKEGYGLS-WNSNLSGHLLSASDDHTVCLWD----------IN-AGPKEGKI 218
Query: 142 LDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF-SAAGDSCAYCWDVES---SRIKMVF 197
+D K + S V E+ +A ++F S A D WD S S+ +
Sbjct: 219 VDA-----KAIFTGHSAVVED--VAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLV 271
Query: 198 KGHSDYLHCIVARNSTNQIV-TGSEDGTARIWDCKSGK 234
H+ ++C+ + I+ TGS D T +WD ++ K
Sbjct: 272 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 309
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 44 IVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGF-----LHGHDGPAYDVKF 98
+VIA++ + ++ K S+ K ++ +E + L GH+GP + V +
Sbjct: 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 61
Query: 99 YGGNEDALLLSCGDDGRICGWR 120
+L SC DG++ W+
Sbjct: 62 AHPKFGTILASCSYDGKVLIWK 83
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 175 FSAAGD--SCAYCWDVESSRIKMV-FKGHSDYLHCIVARNSTN------QIVTGSEDGTA 225
+ A GD + W++E+ + + KGH + ++ I +IVTGS DGT
Sbjct: 82 YLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141
Query: 226 RIWD 229
++WD
Sbjct: 142 KVWD 145
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 18/77 (23%)
Query: 204 LHCIVAR-NSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS 262
LHC+ N + + TG +DG IWD + G VS + +
Sbjct: 239 LHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTM-----------------PVSLLKAHEA 281
Query: 263 ESWLVRVRATNYVILFS 279
E W V +N LF+
Sbjct: 282 EMWEVHFHPSNPEHLFT 298
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 50/142 (35%), Gaps = 16/142 (11%)
Query: 88 GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNH 147
GH Y V F N +LS G + I W N+ G + NH
Sbjct: 116 GHQSEVYSVAFSPDNRQ--ILSAGAEREIKLW------------NILGECKFSSAEKENH 161
Query: 148 QHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCI 207
SP+ ++ A V P S D W+ + +I+ FK H ++ +
Sbjct: 162 SDWVSCVRYSPIMKS-ANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHL 219
Query: 208 VARNSTNQIVTGSEDGTARIWD 229
+ I TG +D IWD
Sbjct: 220 SISPNGKYIATGGKDKKLLIWD 241
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 87 HGHDGPAYDVKFYGGN--EDALLLSCGDDGRICGWRWK 122
H H + DV N E LL SC DDG + W+++
Sbjct: 297 HLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 86 LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWR 120
L GH+GP + V + +L SC D ++ WR
Sbjct: 53 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87
>pdb|3PMQ|A Chain A, Crystal Structure Of The Outer Membrane Decaheme
Cytochrome Mtrf
Length = 669
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 17/104 (16%)
Query: 35 PSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAY 94
P + G P + I+S + S+ +I I+++ +SN + Q ++GI F+
Sbjct: 34 PGEPGKPPAMTISSLNISVDKVAISDGIAQVDYQVSNQENQAVVGIPSATFI-------- 85
Query: 95 DVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHV 138
A LL G G W+ FT + G V
Sbjct: 86 ---------AAQLLPQGATGAGNSSEWQHFTSETCAASCPGTFV 120
>pdb|3EU7|A Chain A, Crystal Structure Of A Palb2 BRCA2 COMPLEX
Length = 356
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 223 GTARIWDCKSGKCIKVIDPVKDKQ 246
GT IWD G+C ++ PV D+
Sbjct: 305 GTIAIWDLLLGQCTALLPPVSDQH 328
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 191 SRIKMVFKGHSDYLH-CIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVK---DKQ 246
+ I+M + H C V + ++ G++ I + S + +VID +K +
Sbjct: 28 AEIRMAASLIRLHFHDCFVNGCDASLLLDGADSEKLAIPNINSARGFEVIDTIKAAVENA 87
Query: 247 LKGVISCVSCITLDASESWLV 267
GV+SC +TL A +S ++
Sbjct: 88 CPGVVSCADILTLAARDSVVL 108
>pdb|2W18|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Human
Palb2
Length = 356
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 223 GTARIWDCKSGKCIKVIDPVKDKQ 246
GT IWD G+C ++ PV D+
Sbjct: 305 GTIAIWDLLLGQCTALLPPVSDQH 328
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,398,279
Number of Sequences: 62578
Number of extensions: 407758
Number of successful extensions: 1609
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1217
Number of HSP's gapped (non-prelim): 352
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)