Query 023643
Match_columns 279
No_of_seqs 406 out of 1099
Neff 12.0
Searched_HMMs 46136
Date Fri Mar 29 05:34:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023643.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023643hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 100.0 4.6E-46 9.9E-51 275.0 17.4 220 2-279 196-416 (459)
2 KOG0271 Notchless-like WD40 re 100.0 3.6E-45 7.9E-50 267.5 21.5 242 2-279 136-479 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-45 3.5E-50 272.1 16.4 219 1-279 239-458 (459)
4 KOG0263 Transcription initiati 100.0 8E-43 1.7E-47 276.0 19.7 204 18-279 444-647 (707)
5 KOG0315 G-protein beta subunit 100.0 6.5E-41 1.4E-45 232.2 23.9 219 3-279 61-286 (311)
6 KOG0271 Notchless-like WD40 re 100.0 7.1E-42 1.5E-46 250.3 19.6 213 17-279 107-395 (480)
7 KOG0279 G protein beta subunit 100.0 6.4E-41 1.4E-45 235.6 21.7 220 1-279 36-260 (315)
8 KOG0279 G protein beta subunit 100.0 7.5E-39 1.6E-43 225.2 22.7 224 2-278 84-310 (315)
9 KOG0273 Beta-transducin family 100.0 3.3E-38 7.1E-43 236.6 23.7 235 1-278 255-520 (524)
10 KOG0286 G-protein beta subunit 100.0 1.3E-37 2.9E-42 220.4 24.1 226 1-279 75-301 (343)
11 KOG0295 WD40 repeat-containing 100.0 3.5E-38 7.6E-43 229.4 20.2 241 2-279 129-404 (406)
12 KOG0281 Beta-TrCP (transducin 100.0 1E-39 2.2E-44 236.8 12.2 211 2-279 216-426 (499)
13 KOG0273 Beta-transducin family 100.0 3.3E-37 7.2E-42 231.2 23.8 220 25-279 235-480 (524)
14 KOG0315 G-protein beta subunit 100.0 4.2E-37 9.2E-42 213.3 21.2 225 1-279 18-243 (311)
15 KOG0284 Polyadenylation factor 100.0 9.3E-39 2E-43 235.6 13.2 219 1-279 158-378 (464)
16 KOG0276 Vesicle coat complex C 100.0 1E-37 2.2E-42 241.7 18.4 219 2-279 34-255 (794)
17 KOG0286 G-protein beta subunit 100.0 2.1E-36 4.5E-41 214.3 23.3 206 18-279 48-257 (343)
18 KOG0284 Polyadenylation factor 100.0 2.2E-38 4.7E-43 233.6 12.3 217 2-279 117-335 (464)
19 KOG0263 Transcription initiati 100.0 2E-37 4.4E-42 245.5 18.6 224 17-279 370-605 (707)
20 KOG0266 WD40 repeat-containing 100.0 4.8E-36 1E-40 241.3 24.8 225 1-279 179-407 (456)
21 KOG0291 WD40-repeat-containing 100.0 3.2E-36 6.9E-41 237.8 22.7 217 3-279 330-548 (893)
22 KOG0277 Peroxisomal targeting 100.0 1.2E-36 2.6E-41 211.6 14.7 221 2-279 82-307 (311)
23 KOG0285 Pleiotropic regulator 100.0 7.8E-36 1.7E-40 217.1 18.9 217 1-279 171-387 (460)
24 KOG0285 Pleiotropic regulator 100.0 1.3E-35 2.9E-40 215.9 18.1 205 16-279 142-346 (460)
25 KOG0645 WD40 repeat protein [G 100.0 2.9E-34 6.2E-39 201.5 23.9 212 16-279 5-223 (312)
26 KOG0318 WD40 repeat stress pro 100.0 3E-34 6.6E-39 218.2 25.7 264 1-279 210-558 (603)
27 KOG0319 WD40-repeat-containing 100.0 2.2E-35 4.7E-40 232.4 19.8 229 2-278 386-616 (775)
28 KOG0645 WD40 repeat protein [G 100.0 2.6E-34 5.6E-39 201.7 22.9 218 2-278 36-258 (312)
29 KOG0313 Microtubule binding pr 100.0 4.4E-35 9.5E-40 214.4 19.6 235 1-278 167-415 (423)
30 PTZ00420 coronin; Provisional 100.0 6.2E-34 1.3E-38 229.6 27.2 229 2-279 53-291 (568)
31 KOG0266 WD40 repeat-containing 100.0 2.6E-34 5.7E-39 231.2 24.9 203 24-279 158-362 (456)
32 KOG0319 WD40-repeat-containing 100.0 1.1E-34 2.3E-39 228.6 21.7 231 2-279 345-575 (775)
33 KOG0265 U5 snRNP-specific prot 100.0 1.7E-34 3.7E-39 205.3 19.5 224 1-279 67-294 (338)
34 KOG0282 mRNA splicing factor [ 100.0 4.8E-36 1E-40 225.6 11.8 215 16-279 205-460 (503)
35 KOG0316 Conserved WD40 repeat- 100.0 1.1E-34 2.4E-39 199.9 16.9 216 2-279 38-255 (307)
36 KOG0295 WD40 repeat-containing 100.0 1.2E-34 2.7E-39 211.0 17.4 207 16-279 99-362 (406)
37 KOG0277 Peroxisomal targeting 100.0 1.3E-33 2.9E-38 196.5 20.5 222 2-279 37-263 (311)
38 KOG0292 Vesicle coat complex C 100.0 3.6E-34 7.8E-39 230.1 19.9 220 2-279 30-278 (1202)
39 KOG0282 mRNA splicing factor [ 100.0 7.3E-35 1.6E-39 219.3 14.8 220 1-279 235-503 (503)
40 KOG0276 Vesicle coat complex C 100.0 4.4E-34 9.5E-39 221.6 19.0 218 2-277 76-295 (794)
41 KOG0313 Microtubule binding pr 100.0 1.1E-33 2.4E-38 207.1 19.9 248 1-279 123-374 (423)
42 KOG0318 WD40 repeat stress pro 100.0 7.3E-33 1.6E-37 210.7 24.6 227 2-279 80-348 (603)
43 cd00200 WD40 WD40 domain, foun 100.0 1.9E-32 4.2E-37 209.7 26.6 218 2-279 72-289 (289)
44 PLN00181 protein SPA1-RELATED; 100.0 1.9E-32 4.1E-37 235.6 28.2 227 1-279 553-791 (793)
45 PTZ00421 coronin; Provisional 100.0 3.8E-32 8.2E-37 218.2 27.5 212 20-279 70-288 (493)
46 KOG0278 Serine/threonine kinas 100.0 5.9E-34 1.3E-38 198.0 14.7 216 1-278 79-294 (334)
47 KOG0265 U5 snRNP-specific prot 100.0 3.6E-33 7.7E-38 198.6 18.6 205 17-279 39-244 (338)
48 PLN00181 protein SPA1-RELATED; 100.0 2.8E-32 6E-37 234.5 26.7 219 1-279 503-736 (793)
49 KOG1332 Vesicle coat complex C 100.0 7.7E-33 1.7E-37 191.7 18.0 229 1-278 31-283 (299)
50 KOG0643 Translation initiation 100.0 2E-32 4.2E-37 192.1 20.1 233 20-277 5-313 (327)
51 KOG0296 Angio-associated migra 100.0 4.3E-32 9.3E-37 197.8 22.0 242 1-279 126-396 (399)
52 KOG0293 WD40 repeat-containing 100.0 2E-32 4.3E-37 202.8 19.2 241 2-279 245-511 (519)
53 cd00200 WD40 WD40 domain, foun 100.0 1.6E-31 3.6E-36 204.5 25.0 218 2-279 30-247 (289)
54 KOG0291 WD40-repeat-containing 100.0 8.3E-32 1.8E-36 213.1 23.3 218 2-279 286-506 (893)
55 KOG0288 WD40 repeat protein Ti 100.0 9.7E-33 2.1E-37 204.2 16.5 247 1-279 195-459 (459)
56 KOG0305 Anaphase promoting com 100.0 1E-31 2.2E-36 209.2 21.9 223 4-279 198-459 (484)
57 KOG0640 mRNA cleavage stimulat 100.0 1.5E-32 3.2E-37 196.8 15.5 222 20-279 107-333 (430)
58 KOG0281 Beta-TrCP (transducin 100.0 2E-33 4.3E-38 204.2 10.9 219 2-279 256-475 (499)
59 KOG0268 Sof1-like rRNA process 100.0 2.5E-32 5.4E-37 199.1 16.3 237 1-279 87-343 (433)
60 KOG0283 WD40 repeat-containing 100.0 8.2E-32 1.8E-36 215.4 20.7 226 19-279 260-530 (712)
61 KOG0310 Conserved WD40 repeat- 100.0 2E-31 4.4E-36 201.0 20.7 216 2-277 89-305 (487)
62 KOG1407 WD40 repeat protein [F 100.0 5.6E-31 1.2E-35 184.2 21.3 238 1-272 40-293 (313)
63 KOG0289 mRNA splicing factor [ 100.0 2.4E-31 5.3E-36 198.1 20.4 220 2-278 240-459 (506)
64 KOG0308 Conserved WD40 repeat- 100.0 9E-32 1.9E-36 209.6 17.4 231 2-277 46-281 (735)
65 KOG0264 Nucleosome remodeling 100.0 2.6E-31 5.6E-36 198.8 18.9 239 2-279 146-402 (422)
66 KOG0316 Conserved WD40 repeat- 100.0 5.8E-31 1.3E-35 181.6 19.0 201 17-279 9-211 (307)
67 KOG0772 Uncharacterized conser 100.0 1.2E-31 2.6E-36 203.9 17.1 231 19-279 161-443 (641)
68 KOG0292 Vesicle coat complex C 100.0 1.7E-30 3.7E-35 209.2 21.6 230 2-275 72-316 (1202)
69 KOG0274 Cdc4 and related F-box 100.0 8.6E-31 1.9E-35 210.8 19.6 212 2-279 227-439 (537)
70 KOG0275 Conserved WD40 repeat- 100.0 9.1E-32 2E-36 194.2 12.1 207 24-277 212-419 (508)
71 KOG1446 Histone H3 (Lys4) meth 100.0 2.5E-29 5.4E-34 180.4 24.2 223 19-279 8-260 (311)
72 KOG0306 WD40-repeat-containing 100.0 4.8E-30 1E-34 203.1 22.3 228 2-279 393-620 (888)
73 KOG1407 WD40 repeat protein [F 100.0 3.1E-30 6.7E-35 180.5 17.7 229 19-277 14-257 (313)
74 KOG0306 WD40-repeat-containing 100.0 3.3E-30 7.2E-35 204.0 19.8 230 2-279 433-662 (888)
75 KOG0310 Conserved WD40 repeat- 100.0 4.5E-30 9.7E-35 193.8 19.1 215 5-279 50-266 (487)
76 KOG0973 Histone transcription 100.0 1.4E-29 3.1E-34 207.7 22.6 239 1-278 35-352 (942)
77 KOG0264 Nucleosome remodeling 100.0 5.1E-30 1.1E-34 191.9 17.9 219 22-279 121-345 (422)
78 KOG0647 mRNA export protein (c 100.0 3.5E-29 7.6E-34 178.6 20.2 235 2-269 49-311 (347)
79 PTZ00421 coronin; Provisional 100.0 1.5E-28 3.2E-33 197.6 25.4 217 25-279 20-243 (493)
80 KOG0294 WD40 repeat-containing 100.0 3.5E-29 7.6E-34 179.6 19.1 216 2-279 62-279 (362)
81 KOG0283 WD40 repeat-containing 100.0 2.1E-29 4.5E-34 201.7 18.5 204 18-279 362-574 (712)
82 KOG0296 Angio-associated migra 100.0 1.3E-28 2.9E-33 179.8 20.8 204 17-277 56-259 (399)
83 KOG0640 mRNA cleavage stimulat 100.0 3.3E-29 7.1E-34 179.7 17.3 233 1-278 132-423 (430)
84 PTZ00420 coronin; Provisional 100.0 4.5E-28 9.7E-33 195.9 25.6 186 47-279 50-246 (568)
85 KOG0641 WD40 repeat protein [G 100.0 9.5E-28 2.1E-32 165.2 23.2 231 19-278 83-346 (350)
86 KOG0274 Cdc4 and related F-box 100.0 4.3E-29 9.2E-34 201.1 19.4 210 1-279 269-480 (537)
87 KOG0646 WD40 repeat protein [G 100.0 2.9E-28 6.4E-33 183.2 21.2 231 5-279 63-305 (476)
88 KOG0275 Conserved WD40 repeat- 100.0 9.3E-30 2E-34 183.9 11.9 221 1-279 233-507 (508)
89 KOG0301 Phospholipase A2-activ 100.0 1.2E-28 2.6E-33 193.5 18.8 213 2-279 34-247 (745)
90 KOG1446 Histone H3 (Lys4) meth 100.0 2.2E-27 4.7E-32 170.5 23.2 218 2-278 79-300 (311)
91 KOG0289 mRNA splicing factor [ 100.0 5.1E-28 1.1E-32 180.5 20.1 196 26-279 220-417 (506)
92 KOG0301 Phospholipase A2-activ 100.0 4.6E-28 1E-32 190.3 20.6 208 1-279 79-286 (745)
93 KOG0302 Ribosome Assembly prot 100.0 3.9E-28 8.4E-33 178.2 18.4 229 2-274 174-432 (440)
94 KOG0270 WD40 repeat-containing 100.0 4.9E-28 1.1E-32 180.9 18.7 225 1-279 200-447 (463)
95 KOG0299 U3 snoRNP-associated p 100.0 1.1E-27 2.5E-32 179.7 19.9 205 22-278 199-407 (479)
96 KOG0973 Histone transcription 100.0 1E-27 2.2E-32 196.9 21.4 235 24-279 12-310 (942)
97 KOG1036 Mitotic spindle checkp 100.0 4.9E-27 1.1E-31 168.1 21.6 232 2-271 34-294 (323)
98 KOG0300 WD40 repeat-containing 100.0 8.5E-28 1.8E-32 173.3 17.4 236 1-279 168-426 (481)
99 KOG4283 Transcription-coupled 100.0 9.3E-28 2E-32 171.1 17.3 222 20-279 38-274 (397)
100 KOG0268 Sof1-like rRNA process 100.0 1.3E-28 2.8E-33 179.8 13.0 222 18-278 59-299 (433)
101 KOG0647 mRNA export protein (c 100.0 5.6E-27 1.2E-31 167.4 20.6 210 22-279 24-279 (347)
102 KOG0267 Microtubule severing p 100.0 3.8E-29 8.3E-34 197.2 10.4 198 18-273 63-260 (825)
103 KOG0300 WD40 repeat-containing 100.0 3.9E-28 8.5E-33 175.0 14.5 230 16-279 139-384 (481)
104 KOG0269 WD40 repeat-containing 100.0 4E-28 8.7E-33 192.8 15.4 220 2-276 109-335 (839)
105 KOG0772 Uncharacterized conser 100.0 5.3E-28 1.1E-32 184.2 15.4 214 19-278 262-484 (641)
106 KOG0269 WD40 repeat-containing 100.0 1.7E-28 3.8E-33 194.8 13.3 200 28-279 90-294 (839)
107 KOG1539 WD repeat protein [Gen 100.0 1.4E-26 3.1E-31 185.4 24.2 252 1-279 222-604 (910)
108 KOG0267 Microtubule severing p 100.0 2.9E-29 6.3E-34 197.9 8.7 202 20-279 23-224 (825)
109 KOG1408 WD40 repeat protein [F 100.0 1.3E-27 2.7E-32 189.0 17.0 229 2-279 480-711 (1080)
110 KOG2445 Nuclear pore complex c 100.0 1.3E-26 2.9E-31 165.9 20.6 253 1-278 33-315 (361)
111 KOG1332 Vesicle coat complex C 100.0 3.1E-28 6.8E-33 169.0 11.9 209 22-279 8-239 (299)
112 KOG0641 WD40 repeat protein [G 100.0 3.9E-25 8.3E-30 152.5 26.1 237 24-279 31-301 (350)
113 KOG0646 WD40 repeat protein [G 100.0 2.2E-27 4.7E-32 178.5 16.3 211 2-262 102-330 (476)
114 KOG0302 Ribosome Assembly prot 100.0 5.1E-27 1.1E-31 172.4 17.7 223 21-279 147-376 (440)
115 KOG4328 WD40 protein [Function 100.0 3.4E-27 7.4E-32 177.2 16.1 216 16-279 177-397 (498)
116 KOG0293 WD40 repeat-containing 100.0 6.6E-27 1.4E-31 173.8 17.3 206 18-279 217-423 (519)
117 KOG2096 WD40 repeat protein [G 99.9 3.9E-26 8.4E-31 164.6 17.9 225 18-279 79-306 (420)
118 KOG1539 WD repeat protein [Gen 99.9 3.1E-26 6.7E-31 183.5 19.0 216 4-279 423-646 (910)
119 KOG0278 Serine/threonine kinas 99.9 1.6E-26 3.5E-31 161.2 14.2 181 2-236 121-302 (334)
120 KOG1036 Mitotic spindle checkp 99.9 1.4E-25 3.1E-30 160.7 19.3 201 23-279 11-260 (323)
121 KOG0639 Transducin-like enhanc 99.9 1.2E-26 2.6E-31 176.6 13.4 214 4-278 488-701 (705)
122 KOG0308 Conserved WD40 repeat- 99.9 1E-25 2.2E-30 176.2 18.4 228 2-278 94-324 (735)
123 KOG0288 WD40 repeat protein Ti 99.9 6.4E-26 1.4E-30 168.3 15.9 228 18-279 168-415 (459)
124 KOG0643 Translation initiation 99.9 2.1E-25 4.5E-30 157.0 16.0 199 2-232 31-318 (327)
125 KOG0307 Vesicle coat complex C 99.9 2.8E-26 6.1E-31 189.5 13.0 226 2-279 89-325 (1049)
126 KOG0305 Anaphase promoting com 99.9 2.3E-25 5E-30 173.9 16.7 181 2-233 279-463 (484)
127 KOG0639 Transducin-like enhanc 99.9 1.9E-25 4E-30 170.2 15.4 211 23-279 417-661 (705)
128 KOG1273 WD40 repeat protein [G 99.9 1.2E-24 2.6E-29 156.7 17.7 220 28-278 26-277 (405)
129 KOG4283 Transcription-coupled 99.9 1.5E-24 3.2E-29 155.0 18.0 236 1-279 122-363 (397)
130 KOG1274 WD40 repeat protein [G 99.9 2.8E-24 6.1E-29 174.1 21.6 220 1-279 33-260 (933)
131 KOG1034 Transcriptional repres 99.9 2.1E-25 4.6E-30 161.2 13.0 240 3-279 115-381 (385)
132 KOG0649 WD40 repeat protein [G 99.9 2.6E-24 5.6E-29 149.7 17.7 220 26-278 11-232 (325)
133 KOG0321 WD40 repeat-containing 99.9 1.2E-24 2.6E-29 169.8 17.4 251 2-279 121-389 (720)
134 KOG2055 WD40 repeat protein [G 99.9 2.9E-24 6.3E-29 161.8 18.6 242 1-278 233-509 (514)
135 KOG1274 WD40 repeat protein [G 99.9 9.3E-24 2E-28 171.1 22.1 217 1-274 74-293 (933)
136 KOG2106 Uncharacterized conser 99.9 2.3E-23 5E-28 158.8 22.9 232 2-279 266-519 (626)
137 KOG0299 U3 snoRNP-associated p 99.9 1.8E-24 3.9E-29 162.7 16.8 218 18-279 135-354 (479)
138 KOG0321 WD40 repeat-containing 99.9 1.7E-24 3.6E-29 169.1 16.7 243 2-278 73-344 (720)
139 KOG0294 WD40 repeat-containing 99.9 7.4E-24 1.6E-28 152.5 18.4 200 18-279 36-235 (362)
140 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.6E-22 3.5E-27 156.3 26.6 238 1-279 9-277 (300)
141 KOG2048 WD40 repeat protein [G 99.9 3.1E-23 6.7E-28 163.0 21.7 219 1-278 45-272 (691)
142 KOG1408 WD40 repeat protein [F 99.9 4.3E-24 9.3E-29 169.3 16.8 203 25-279 459-669 (1080)
143 KOG2055 WD40 repeat protein [G 99.9 4E-23 8.7E-28 155.7 20.6 203 25-279 213-415 (514)
144 KOG2445 Nuclear pore complex c 99.9 4.6E-23 9.9E-28 148.0 19.9 217 21-278 9-253 (361)
145 KOG4378 Nuclear protein COP1 [ 99.9 2.6E-23 5.6E-28 158.4 19.0 203 2-263 100-305 (673)
146 KOG4378 Nuclear protein COP1 [ 99.9 4.4E-24 9.6E-29 162.5 14.7 218 2-279 56-278 (673)
147 KOG2048 WD40 repeat protein [G 99.9 1.8E-22 3.8E-27 158.8 23.8 207 22-279 22-231 (691)
148 KOG2106 Uncharacterized conser 99.9 1.5E-22 3.3E-27 154.4 22.4 233 3-278 222-474 (626)
149 KOG4328 WD40 protein [Function 99.9 3.1E-23 6.8E-28 156.1 17.7 244 2-278 209-492 (498)
150 KOG0650 WD40 repeat nucleolar 99.9 7.4E-23 1.6E-27 159.0 19.4 247 17-278 392-732 (733)
151 KOG0270 WD40 repeat-containing 99.9 4E-23 8.6E-28 154.9 15.6 217 29-279 177-402 (463)
152 KOG1007 WD repeat protein TSSC 99.9 1.3E-22 2.9E-27 144.5 17.0 216 19-278 57-286 (370)
153 KOG0303 Actin-binding protein 99.9 6.4E-23 1.4E-27 151.9 15.9 212 19-278 75-291 (472)
154 KOG0642 Cell-cycle nuclear pro 99.9 4.1E-23 8.8E-28 159.2 15.4 219 20-279 289-559 (577)
155 KOG1063 RNA polymerase II elon 99.9 1.2E-21 2.6E-26 154.6 22.3 252 1-279 287-646 (764)
156 KOG0642 Cell-cycle nuclear pro 99.9 2.4E-22 5.1E-27 155.1 17.3 223 1-240 314-570 (577)
157 KOG0322 G-protein beta subunit 99.9 1.5E-22 3.2E-27 142.5 14.8 227 18-279 7-321 (323)
158 KOG2096 WD40 repeat protein [G 99.9 7.8E-22 1.7E-26 142.6 18.2 166 80-278 218-399 (420)
159 KOG1007 WD repeat protein TSSC 99.9 1.7E-21 3.7E-26 139.0 18.5 212 23-277 121-357 (370)
160 KOG1587 Cytoplasmic dynein int 99.9 2.8E-21 6E-26 155.3 22.0 254 2-279 221-514 (555)
161 KOG0771 Prolactin regulatory e 99.9 6.7E-22 1.4E-26 147.6 16.0 193 29-277 148-350 (398)
162 KOG0307 Vesicle coat complex C 99.9 1.4E-22 3E-27 168.0 13.1 206 25-279 64-282 (1049)
163 KOG1445 Tumor-specific antigen 99.9 1.9E-21 4E-26 152.7 17.0 111 161-279 629-748 (1012)
164 KOG1034 Transcriptional repres 99.9 1.7E-22 3.8E-27 146.3 10.0 213 23-279 87-335 (385)
165 KOG1273 WD40 repeat protein [G 99.9 4.1E-21 9E-26 138.6 16.1 238 1-279 43-320 (405)
166 KOG1009 Chromatin assembly com 99.9 2.7E-20 5.9E-25 138.5 19.7 181 25-229 13-193 (434)
167 KOG2919 Guanine nucleotide-bin 99.9 1.1E-20 2.3E-25 137.0 16.4 207 25-279 104-325 (406)
168 KOG2394 WD40 protein DMR-N9 [G 99.9 1.4E-20 3E-25 144.8 17.9 198 40-261 184-384 (636)
169 KOG1188 WD40 repeat protein [G 99.9 8.1E-21 1.7E-25 138.3 15.5 208 26-279 22-240 (376)
170 KOG0290 Conserved WD40 repeat- 99.9 1.2E-20 2.6E-25 134.8 16.0 225 3-272 121-357 (364)
171 KOG1063 RNA polymerase II elon 99.9 3E-20 6.4E-25 146.9 18.3 215 19-279 519-761 (764)
172 KOG0303 Actin-binding protein 99.9 4.7E-20 1E-24 136.9 18.1 170 83-279 74-247 (472)
173 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.6E-19 5.6E-24 138.4 21.7 180 42-279 2-185 (300)
174 KOG1188 WD40 repeat protein [G 99.9 3.1E-20 6.7E-25 135.3 14.5 242 2-278 49-343 (376)
175 KOG1523 Actin-related protein 99.9 9.9E-20 2.2E-24 131.7 16.7 209 24-277 9-232 (361)
176 KOG1538 Uncharacterized conser 99.9 3.7E-19 8.1E-24 140.8 20.9 234 2-279 32-291 (1081)
177 KOG0290 Conserved WD40 repeat- 99.8 1.2E-19 2.7E-24 129.6 15.6 214 23-279 94-316 (364)
178 KOG2110 Uncharacterized conser 99.8 3.9E-18 8.5E-23 125.7 22.9 194 26-278 47-245 (391)
179 KOG0644 Uncharacterized conser 99.8 7.7E-21 1.7E-25 153.3 9.5 238 2-278 211-465 (1113)
180 COG2319 FOG: WD40 repeat [Gene 99.8 8E-18 1.7E-22 136.1 27.2 220 2-279 133-357 (466)
181 KOG1445 Tumor-specific antigen 99.8 6.4E-20 1.4E-24 144.3 13.4 227 3-278 603-841 (1012)
182 KOG2919 Guanine nucleotide-bin 99.8 2.5E-19 5.4E-24 130.0 15.2 216 2-272 132-361 (406)
183 COG2319 FOG: WD40 repeat [Gene 99.8 1.3E-17 2.8E-22 134.9 25.8 220 1-279 85-312 (466)
184 PRK01742 tolB translocation pr 99.8 1.3E-18 2.8E-23 140.1 19.1 210 2-278 183-398 (429)
185 KOG2394 WD40 protein DMR-N9 [G 99.8 6.6E-19 1.4E-23 135.7 16.0 201 3-233 195-454 (636)
186 KOG1310 WD40 repeat protein [G 99.8 5.5E-19 1.2E-23 136.7 14.6 224 18-279 43-301 (758)
187 PRK11028 6-phosphogluconolacto 99.8 8.9E-17 1.9E-21 125.8 24.6 229 2-279 11-256 (330)
188 KOG1538 Uncharacterized conser 99.8 1.4E-17 3E-22 132.1 19.5 210 27-278 14-249 (1081)
189 PRK11028 6-phosphogluconolacto 99.8 1.2E-16 2.7E-21 124.9 24.8 231 2-279 56-302 (330)
190 KOG1009 Chromatin assembly com 99.8 9.4E-19 2E-23 130.4 11.8 161 90-277 13-191 (434)
191 KOG1240 Protein kinase contain 99.8 9.9E-18 2.1E-22 140.6 18.9 225 8-279 1034-1271(1431)
192 KOG1517 Guanine nucleotide bin 99.8 1.1E-17 2.5E-22 138.5 17.0 232 1-279 1131-1379(1387)
193 KOG3881 Uncharacterized conser 99.8 2.5E-17 5.4E-22 122.4 16.7 214 2-262 124-342 (412)
194 KOG1524 WD40 repeat-containing 99.8 8.2E-18 1.8E-22 130.0 14.6 199 2-277 84-282 (737)
195 KOG1523 Actin-related protein 99.8 2.8E-17 6E-22 119.2 15.9 189 3-234 32-239 (361)
196 KOG0322 G-protein beta subunit 99.8 3.5E-18 7.5E-23 120.7 10.6 172 26-230 151-322 (323)
197 KOG3881 Uncharacterized conser 99.8 9.2E-17 2E-21 119.4 18.3 192 42-279 116-318 (412)
198 KOG2111 Uncharacterized conser 99.8 2.2E-16 4.8E-21 114.5 19.7 173 51-278 75-253 (346)
199 KOG2139 WD40 repeat protein [G 99.8 3.4E-16 7.4E-21 115.5 20.8 229 2-272 119-366 (445)
200 KOG2139 WD40 repeat protein [G 99.8 1.3E-16 2.9E-21 117.6 18.0 199 25-269 98-298 (445)
201 PF08662 eIF2A: Eukaryotic tra 99.8 1.6E-16 3.4E-21 113.6 17.9 106 161-279 61-177 (194)
202 KOG1524 WD40 repeat-containing 99.8 2E-17 4.3E-22 127.9 14.1 173 40-271 74-246 (737)
203 KOG0644 Uncharacterized conser 99.8 4.6E-19 1E-23 143.2 5.5 200 18-279 183-424 (1113)
204 KOG1517 Guanine nucleotide bin 99.8 9.3E-17 2E-21 133.2 18.1 229 4-279 1087-1331(1387)
205 KOG0649 WD40 repeat protein [G 99.8 1.3E-15 2.9E-20 106.7 20.5 220 2-276 31-269 (325)
206 PF08662 eIF2A: Eukaryotic tra 99.8 4.5E-16 9.7E-21 111.2 18.8 156 29-239 9-186 (194)
207 KOG1272 WD40-repeat-containing 99.7 1E-17 2.2E-22 127.1 10.0 210 26-278 130-359 (545)
208 KOG2110 Uncharacterized conser 99.7 4.5E-15 9.8E-20 109.8 23.1 156 25-233 87-250 (391)
209 KOG0771 Prolactin regulatory e 99.7 6.9E-17 1.5E-21 121.1 13.5 186 1-232 164-355 (398)
210 KOG1963 WD40 repeat protein [G 99.7 6.7E-16 1.5E-20 125.6 20.1 238 3-277 37-318 (792)
211 PRK01742 tolB translocation pr 99.7 1.7E-16 3.6E-21 128.0 16.2 195 3-262 228-426 (429)
212 KOG4227 WD40 repeat protein [G 99.7 7.9E-17 1.7E-21 120.2 12.9 209 17-269 48-262 (609)
213 KOG0650 WD40 repeat nucleolar 99.7 4.2E-17 9E-22 127.5 11.7 110 160-278 567-677 (733)
214 PRK04922 tolB translocation pr 99.7 1.8E-15 4E-20 122.2 21.4 203 4-271 185-398 (433)
215 KOG2111 Uncharacterized conser 99.7 1.5E-14 3.2E-19 105.2 23.1 178 3-233 75-258 (346)
216 PRK03629 tolB translocation pr 99.7 4.8E-15 1E-19 119.4 22.7 205 4-274 180-396 (429)
217 KOG4227 WD40 repeat protein [G 99.7 3.6E-15 7.8E-20 111.5 19.7 251 2-279 77-385 (609)
218 PRK05137 tolB translocation pr 99.7 5.8E-15 1.3E-19 119.5 22.7 203 4-271 183-396 (435)
219 KOG1240 Protein kinase contain 99.7 4.9E-15 1.1E-19 124.9 22.1 240 1-279 1069-1332(1431)
220 KOG1310 WD40 repeat protein [G 99.7 1.1E-16 2.3E-21 124.3 10.4 173 81-279 41-229 (758)
221 KOG1334 WD40 repeat protein [G 99.7 7.9E-16 1.7E-20 117.7 14.2 250 17-279 134-464 (559)
222 PRK02889 tolB translocation pr 99.7 8E-15 1.7E-19 118.2 20.9 206 4-273 177-392 (427)
223 KOG1963 WD40 repeat protein [G 99.7 4.6E-15 1E-19 120.9 18.9 202 22-270 202-417 (792)
224 KOG2321 WD40 repeat protein [G 99.7 1.5E-14 3.2E-19 113.1 17.0 224 24-277 50-339 (703)
225 KOG1272 WD40-repeat-containing 99.7 9.6E-16 2.1E-20 116.6 9.9 207 4-273 192-401 (545)
226 TIGR02800 propeller_TolB tol-p 99.6 1.5E-13 3.3E-18 111.2 21.7 204 4-273 171-386 (417)
227 KOG1354 Serine/threonine prote 99.6 1.5E-14 3.3E-19 106.3 12.8 247 25-279 25-299 (433)
228 KOG1587 Cytoplasmic dynein int 99.6 5.2E-14 1.1E-18 113.8 16.9 201 51-279 222-470 (555)
229 KOG0280 Uncharacterized conser 99.6 7.3E-14 1.6E-18 100.6 13.9 199 28-278 124-330 (339)
230 PRK03629 tolB translocation pr 99.6 5.8E-13 1.3E-17 107.4 19.0 194 4-261 224-427 (429)
231 PRK02889 tolB translocation pr 99.6 4.2E-13 9.2E-18 108.3 18.2 197 4-262 221-425 (427)
232 KOG4497 Uncharacterized conser 99.6 1.2E-12 2.7E-17 96.0 18.6 255 2-274 70-425 (447)
233 PF02239 Cytochrom_D1: Cytochr 99.6 3.2E-12 7E-17 100.3 21.6 242 2-279 15-345 (369)
234 KOG0974 WD-repeat protein WDR6 99.6 4.1E-13 8.8E-18 111.7 16.9 183 40-279 98-286 (967)
235 PRK00178 tolB translocation pr 99.6 4.2E-12 9E-17 103.1 22.7 201 5-271 181-393 (430)
236 KOG1354 Serine/threonine prote 99.5 2.2E-13 4.8E-18 100.3 12.9 232 25-279 84-357 (433)
237 PRK05137 tolB translocation pr 99.5 3.4E-12 7.5E-17 103.5 20.6 158 83-278 194-363 (435)
238 KOG4547 WD40 repeat-containing 99.5 2.9E-12 6.3E-17 100.6 19.0 188 40-278 4-217 (541)
239 KOG0974 WD-repeat protein WDR6 99.5 5.9E-13 1.3E-17 110.7 15.5 145 40-232 144-289 (967)
240 KOG4547 WD40 repeat-containing 99.5 3.1E-12 6.8E-17 100.5 17.6 183 2-232 14-221 (541)
241 KOG4497 Uncharacterized conser 99.5 2.2E-12 4.8E-17 94.7 15.6 221 26-279 49-389 (447)
242 PRK01029 tolB translocation pr 99.5 1.7E-11 3.7E-16 98.7 22.3 206 4-269 166-388 (428)
243 PRK04922 tolB translocation pr 99.5 4.8E-12 1E-16 102.5 18.8 192 4-261 229-432 (433)
244 PRK04792 tolB translocation pr 99.5 1.2E-11 2.6E-16 100.3 21.1 201 5-271 200-412 (448)
245 KOG0280 Uncharacterized conser 99.5 2.5E-11 5.5E-16 87.8 19.0 164 90-279 69-239 (339)
246 KOG1064 RAVE (regulator of V-A 99.5 3E-13 6.6E-18 118.3 10.6 185 22-279 2205-2396(2439)
247 PF10282 Lactonase: Lactonase, 99.5 4.3E-10 9.3E-15 88.4 27.5 236 2-278 61-319 (345)
248 KOG1409 Uncharacterized conser 99.5 7.4E-12 1.6E-16 92.4 16.1 221 2-279 45-268 (404)
249 KOG4190 Uncharacterized conser 99.5 1.3E-13 2.8E-18 108.0 7.2 182 18-242 728-917 (1034)
250 KOG2315 Predicted translation 99.4 1.1E-10 2.4E-15 91.5 22.0 217 2-279 145-388 (566)
251 PF02239 Cytochrom_D1: Cytochr 99.4 5.9E-11 1.3E-15 93.3 20.8 184 41-278 5-199 (369)
252 KOG1064 RAVE (regulator of V-A 99.4 4.8E-13 1E-17 117.1 9.3 177 2-241 2229-2408(2439)
253 KOG2321 WD40 repeat protein [G 99.4 1.2E-11 2.5E-16 97.3 15.8 186 89-279 50-256 (703)
254 TIGR02800 propeller_TolB tol-p 99.4 3.9E-11 8.5E-16 97.2 19.6 158 84-279 183-352 (417)
255 KOG4532 WD40-like repeat conta 99.4 9.2E-11 2E-15 84.0 18.7 221 3-272 94-323 (344)
256 PRK01029 tolB translocation pr 99.4 1.1E-10 2.4E-15 94.1 20.5 202 5-263 213-426 (428)
257 TIGR02658 TTQ_MADH_Hv methylam 99.4 8.5E-10 1.8E-14 85.1 23.5 239 2-279 26-328 (352)
258 COG4946 Uncharacterized protei 99.4 1.8E-10 3.9E-15 88.9 19.4 207 1-269 285-506 (668)
259 COG5170 CDC55 Serine/threonine 99.4 1.6E-11 3.6E-16 89.7 12.8 235 25-279 26-307 (460)
260 PF10282 Lactonase: Lactonase, 99.4 2.2E-09 4.8E-14 84.5 25.5 241 3-278 13-272 (345)
261 COG5170 CDC55 Serine/threonine 99.4 1.9E-11 4.2E-16 89.3 11.7 229 26-277 86-363 (460)
262 KOG1409 Uncharacterized conser 99.3 7.7E-11 1.7E-15 87.2 13.3 232 17-279 106-392 (404)
263 PRK00178 tolB translocation pr 99.3 9.1E-10 2E-14 89.5 20.6 150 84-271 192-350 (430)
264 PLN02919 haloacid dehalogenase 99.3 3.3E-09 7.2E-14 94.1 25.3 233 28-279 626-886 (1057)
265 KOG3914 WD repeat protein WDR4 99.3 1.4E-10 3E-15 87.4 13.6 164 29-241 66-233 (390)
266 COG2706 3-carboxymuconate cycl 99.3 2.6E-08 5.6E-13 74.6 24.4 236 2-271 15-263 (346)
267 KOG4532 WD40-like repeat conta 99.3 1.8E-09 3.9E-14 77.5 17.4 176 40-263 83-262 (344)
268 PRK04792 tolB translocation pr 99.3 8.4E-10 1.8E-14 89.7 17.9 192 4-261 243-446 (448)
269 KOG4714 Nucleoporin [Nuclear s 99.3 2.8E-11 6.2E-16 86.1 8.0 207 28-279 39-252 (319)
270 COG2706 3-carboxymuconate cycl 99.3 2.3E-08 5E-13 74.9 23.5 227 3-278 64-318 (346)
271 KOG3914 WD repeat protein WDR4 99.2 1.7E-10 3.6E-15 87.0 11.6 154 93-279 65-221 (390)
272 KOG2695 WD40 repeat protein [G 99.2 6.9E-11 1.5E-15 87.5 9.2 146 89-261 251-402 (425)
273 KOG4714 Nucleoporin [Nuclear s 99.2 3E-10 6.4E-15 81.0 11.7 114 162-279 182-316 (319)
274 PF04762 IKI3: IKI3 family; I 99.2 5.5E-09 1.2E-13 91.2 21.6 221 25-278 75-330 (928)
275 KOG2041 WD40 repeat protein [G 99.2 5.5E-10 1.2E-14 90.6 13.8 216 25-277 14-243 (1189)
276 KOG4190 Uncharacterized conser 99.2 1.5E-10 3.3E-15 91.2 10.0 152 2-198 756-915 (1034)
277 KOG0882 Cyclophilin-related pe 99.2 9.8E-10 2.1E-14 84.3 14.0 222 1-240 28-314 (558)
278 PF00400 WD40: WD domain, G-be 99.2 1.5E-10 3.3E-15 59.8 6.1 39 191-229 1-39 (39)
279 PRK04043 tolB translocation pr 99.2 4.6E-08 1E-12 78.6 22.6 181 27-271 189-387 (419)
280 PF15492 Nbas_N: Neuroblastoma 99.2 2.7E-08 5.9E-13 72.4 19.0 180 27-243 45-271 (282)
281 KOG1334 WD40 repeat protein [G 99.2 3.3E-10 7.2E-15 87.5 9.6 198 2-232 254-467 (559)
282 PF04762 IKI3: IKI3 family; I 99.1 4.2E-08 9.1E-13 85.8 22.5 230 2-277 96-375 (928)
283 PF08450 SGL: SMP-30/Gluconola 99.1 3.5E-07 7.6E-12 68.7 24.5 181 28-269 42-243 (246)
284 KOG0309 Conserved WD40 repeat- 99.1 4.8E-10 1E-14 91.1 9.4 217 6-278 94-336 (1081)
285 KOG2315 Predicted translation 99.1 1.9E-08 4E-13 79.4 17.6 119 89-238 269-396 (566)
286 KOG0309 Conserved WD40 repeat- 99.1 1.5E-09 3.2E-14 88.4 11.1 187 27-263 69-257 (1081)
287 KOG2066 Vacuolar assembly/sort 99.1 8.1E-09 1.8E-13 84.8 14.5 176 26-270 40-223 (846)
288 PF00400 WD40: WD domain, G-be 99.1 4.2E-10 9.2E-15 58.1 4.8 38 81-120 2-39 (39)
289 KOG2695 WD40 repeat protein [G 99.1 5.6E-10 1.2E-14 82.8 6.7 135 25-200 252-387 (425)
290 PLN02919 haloacid dehalogenase 99.0 1.3E-07 2.7E-12 84.4 22.4 192 29-235 686-892 (1057)
291 PF15492 Nbas_N: Neuroblastoma 99.0 8.8E-07 1.9E-11 64.7 22.6 209 31-279 3-257 (282)
292 COG4946 Uncharacterized protei 99.0 4.3E-08 9.4E-13 76.2 16.6 122 23-195 357-483 (668)
293 KOG2114 Vacuolar assembly/sort 99.0 1.1E-07 2.4E-12 78.9 18.7 201 32-279 30-241 (933)
294 TIGR02658 TTQ_MADH_Hv methylam 99.0 1.1E-06 2.4E-11 68.3 22.8 213 2-239 76-338 (352)
295 KOG1832 HIV-1 Vpr-binding prot 99.0 1.1E-09 2.3E-14 91.1 5.7 187 18-270 1094-1285(1516)
296 KOG1645 RING-finger-containing 98.9 2.2E-07 4.7E-12 70.8 16.8 84 18-125 186-269 (463)
297 KOG2041 WD40 repeat protein [G 98.9 3.2E-08 7E-13 80.7 13.2 196 19-272 65-279 (1189)
298 KOG1920 IkappaB kinase complex 98.9 5.2E-07 1.1E-11 77.8 19.9 221 26-278 69-319 (1265)
299 PF13360 PQQ_2: PQQ-like domai 98.9 1.2E-06 2.5E-11 65.5 20.1 212 2-279 2-228 (238)
300 PF08450 SGL: SMP-30/Gluconola 98.9 5.8E-06 1.3E-10 62.1 23.6 193 30-279 4-211 (246)
301 PRK04043 tolB translocation pr 98.9 4.6E-07 1E-11 72.9 18.1 170 4-232 214-401 (419)
302 COG5354 Uncharacterized protei 98.9 1.7E-06 3.6E-11 68.0 20.0 237 4-279 109-393 (561)
303 TIGR03300 assembly_YfgL outer 98.9 6.5E-07 1.4E-11 71.7 18.8 132 106-278 243-376 (377)
304 KOG1912 WD40 repeat protein [G 98.9 4.9E-07 1.1E-11 74.6 17.7 212 15-278 45-301 (1062)
305 KOG0882 Cyclophilin-related pe 98.9 5.8E-08 1.3E-12 74.9 11.4 210 23-279 7-229 (558)
306 KOG1275 PAB-dependent poly(A) 98.8 1.2E-07 2.5E-12 79.4 13.4 180 41-279 147-340 (1118)
307 COG5354 Uncharacterized protei 98.8 1.1E-06 2.3E-11 69.1 17.4 199 2-272 201-420 (561)
308 KOG2314 Translation initiation 98.8 1.4E-06 3E-11 69.3 17.8 182 28-268 213-410 (698)
309 PF07433 DUF1513: Protein of u 98.8 1.6E-05 3.4E-10 60.0 22.1 202 29-279 8-245 (305)
310 KOG1275 PAB-dependent poly(A) 98.8 2.7E-07 5.9E-12 77.3 13.9 149 26-229 178-340 (1118)
311 PF06977 SdiA-regulated: SdiA- 98.8 2.6E-05 5.6E-10 57.8 22.1 218 20-278 16-247 (248)
312 PF11768 DUF3312: Protein of u 98.7 2.2E-05 4.8E-10 63.3 22.2 107 163-279 209-327 (545)
313 KOG2114 Vacuolar assembly/sort 98.7 7.9E-06 1.7E-10 68.4 20.1 200 2-240 44-252 (933)
314 TIGR03300 assembly_YfgL outer 98.7 5.3E-06 1.2E-10 66.5 19.0 96 171-279 241-336 (377)
315 KOG1008 Uncharacterized conser 98.7 5.4E-09 1.2E-13 83.9 1.7 208 25-279 56-273 (783)
316 KOG1912 WD40 repeat protein [G 98.6 1.5E-06 3.2E-11 71.9 13.8 161 24-276 14-181 (1062)
317 KOG2314 Translation initiation 98.6 2.1E-06 4.6E-11 68.3 14.2 137 93-268 213-363 (698)
318 PF11768 DUF3312: Protein of u 98.6 6.4E-07 1.4E-11 71.8 11.2 72 160-233 260-331 (545)
319 PF07433 DUF1513: Protein of u 98.6 8.2E-05 1.8E-09 56.2 21.5 194 31-271 56-276 (305)
320 KOG1008 Uncharacterized conser 98.6 5.4E-08 1.2E-12 78.3 4.9 184 2-232 79-276 (783)
321 KOG3617 WD40 and TPR repeat-co 98.5 2.4E-06 5.1E-11 71.5 12.2 71 28-123 62-132 (1416)
322 PF08596 Lgl_C: Lethal giant l 98.5 4.3E-05 9.2E-10 60.9 18.6 220 27-279 3-288 (395)
323 KOG2066 Vacuolar assembly/sort 98.5 2E-05 4.4E-10 65.6 17.0 143 40-231 82-233 (846)
324 KOG1920 IkappaB kinase complex 98.4 8.3E-05 1.8E-09 64.9 19.4 196 2-233 89-324 (1265)
325 KOG3621 WD40 repeat-containing 98.4 8.7E-06 1.9E-10 66.7 13.0 151 24-218 32-186 (726)
326 KOG4640 Anaphase-promoting com 98.4 2.9E-06 6.3E-11 68.6 9.3 92 162-261 23-115 (665)
327 PF04841 Vps16_N: Vps16, N-ter 98.4 0.00075 1.6E-08 54.6 23.7 193 4-240 62-255 (410)
328 KOG3617 WD40 and TPR repeat-co 98.3 8.4E-06 1.8E-10 68.4 10.7 109 94-231 19-131 (1416)
329 PF13360 PQQ_2: PQQ-like domai 98.3 0.00026 5.5E-09 52.9 17.6 186 2-238 45-237 (238)
330 PF04053 Coatomer_WDAD: Coatom 98.3 0.00019 4.1E-09 58.2 16.9 146 20-231 27-173 (443)
331 smart00320 WD40 WD40 repeats. 98.2 5.7E-06 1.2E-10 41.8 5.8 39 191-229 2-40 (40)
332 COG0823 TolB Periplasmic compo 98.2 0.00022 4.9E-09 57.5 17.1 166 24-239 191-366 (425)
333 PRK02888 nitrous-oxide reducta 98.2 0.00033 7.1E-09 58.2 18.0 105 162-270 323-450 (635)
334 KOG3621 WD40 repeat-containing 98.2 2.1E-05 4.6E-10 64.6 10.3 109 166-277 40-150 (726)
335 PRK11138 outer membrane biogen 98.2 0.0011 2.4E-08 53.6 20.4 95 171-278 256-350 (394)
336 PF14783 BBS2_Mid: Ciliary BBS 98.2 0.00043 9.3E-09 43.8 14.1 101 162-277 2-110 (111)
337 PRK11138 outer membrane biogen 98.2 0.00091 2E-08 54.1 19.6 98 170-278 293-391 (394)
338 PF04053 Coatomer_WDAD: Coatom 98.2 0.00033 7.2E-09 56.8 16.4 136 89-273 31-166 (443)
339 KOG1645 RING-finger-containing 98.1 6.4E-06 1.4E-10 63.1 6.1 88 183-279 175-264 (463)
340 PF08596 Lgl_C: Lethal giant l 98.1 0.00021 4.6E-09 57.0 14.7 224 22-271 83-326 (395)
341 smart00320 WD40 WD40 repeats. 98.1 1.6E-05 3.5E-10 40.0 5.5 32 248-279 9-40 (40)
342 PF14783 BBS2_Mid: Ciliary BBS 98.1 0.00083 1.8E-08 42.6 13.2 68 28-120 2-69 (111)
343 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.00094 2E-08 48.8 14.8 71 170-240 62-132 (354)
344 PRK02888 nitrous-oxide reducta 98.0 0.0018 3.9E-08 53.9 17.9 98 170-279 287-402 (635)
345 PF04841 Vps16_N: Vps16, N-ter 98.0 0.0033 7.1E-08 51.0 18.8 40 80-122 70-109 (410)
346 PF08553 VID27: VID27 cytoplas 98.0 0.00035 7.6E-09 60.0 13.5 148 40-230 492-646 (794)
347 KOG4640 Anaphase-promoting com 97.9 7.9E-05 1.7E-09 60.6 8.6 74 25-124 20-94 (665)
348 KOG2444 WD40 repeat protein [G 97.9 5.4E-05 1.2E-09 53.9 6.5 104 106-232 72-178 (238)
349 KOG2395 Protein involved in va 97.9 0.00024 5.2E-09 56.9 10.4 146 44-230 349-499 (644)
350 KOG1832 HIV-1 Vpr-binding prot 97.9 2.2E-05 4.8E-10 66.4 4.8 153 80-267 1091-1246(1516)
351 PF03178 CPSF_A: CPSF A subuni 97.8 0.0023 5E-08 50.2 15.4 175 3-228 62-262 (321)
352 PF03178 CPSF_A: CPSF A subuni 97.8 0.0034 7.3E-08 49.3 16.3 106 162-278 91-199 (321)
353 COG0823 TolB Periplasmic compo 97.8 0.0021 4.6E-08 52.0 14.6 164 5-221 220-389 (425)
354 PF08553 VID27: VID27 cytoplas 97.8 0.0047 1E-07 53.4 17.0 92 173-273 544-640 (794)
355 COG3490 Uncharacterized protei 97.7 0.005 1.1E-07 45.9 14.2 149 94-270 71-244 (366)
356 KOG2444 WD40 repeat protein [G 97.7 0.0001 2.2E-09 52.5 5.4 101 171-279 70-175 (238)
357 COG3386 Gluconolactonase [Carb 97.6 0.017 3.7E-07 44.7 19.5 99 162-269 165-273 (307)
358 PRK13616 lipoprotein LpqB; Pro 97.6 0.02 4.4E-07 48.6 18.9 106 161-276 449-563 (591)
359 PF06977 SdiA-regulated: SdiA- 97.6 0.0073 1.6E-07 45.0 14.6 169 85-279 16-199 (248)
360 COG3391 Uncharacterized conser 97.6 0.023 4.9E-07 45.8 21.2 167 27-240 117-292 (381)
361 PF06433 Me-amine-dh_H: Methyl 97.6 0.019 4E-07 44.5 19.9 105 166-279 190-318 (342)
362 PRK13616 lipoprotein LpqB; Pro 97.6 0.0083 1.8E-07 50.8 16.1 102 163-273 400-517 (591)
363 COG3391 Uncharacterized conser 97.5 0.035 7.6E-07 44.7 20.7 181 30-269 78-270 (381)
364 KOG2079 Vacuolar assembly/sort 97.5 0.00093 2E-08 58.1 8.9 100 170-274 98-198 (1206)
365 KOG2079 Vacuolar assembly/sort 97.5 0.0034 7.4E-08 54.8 12.2 65 40-124 98-162 (1206)
366 KOG3630 Nuclear pore complex, 97.5 0.0057 1.2E-07 53.9 13.4 210 30-268 46-260 (1405)
367 PF12894 Apc4_WD40: Anaphase-p 97.5 0.00052 1.1E-08 36.3 4.8 31 25-59 11-41 (47)
368 PHA02713 hypothetical protein; 97.4 0.029 6.3E-07 47.6 17.5 82 182-273 433-523 (557)
369 PF12894 Apc4_WD40: Anaphase-p 97.4 0.00073 1.6E-08 35.8 5.1 34 201-235 11-44 (47)
370 KOG2395 Protein involved in va 97.4 0.013 2.8E-07 47.5 14.0 89 175-272 398-492 (644)
371 COG3386 Gluconolactonase [Carb 97.4 0.041 8.9E-07 42.6 17.5 69 162-231 113-193 (307)
372 KOG4649 PQQ (pyrrolo-quinoline 97.4 0.0092 2E-07 43.9 11.6 98 172-279 24-121 (354)
373 PF00780 CNH: CNH domain; Int 97.3 0.042 9.1E-07 42.1 20.6 160 40-239 6-173 (275)
374 cd00216 PQQ_DH Dehydrogenases 97.3 0.078 1.7E-06 44.4 18.7 61 179-241 364-434 (488)
375 PF00930 DPPIV_N: Dipeptidyl p 97.3 0.021 4.5E-07 45.6 14.1 192 3-239 23-226 (353)
376 PF00930 DPPIV_N: Dipeptidyl p 97.2 0.0018 3.8E-08 51.6 7.8 103 168-272 1-121 (353)
377 KOG4441 Proteins containing BT 97.1 0.1 2.2E-06 44.4 17.4 95 170-274 427-534 (571)
378 PF00780 CNH: CNH domain; Int 97.1 0.061 1.3E-06 41.2 14.5 129 106-273 9-158 (275)
379 PF08728 CRT10: CRT10; InterP 97.0 0.052 1.1E-06 46.5 14.5 174 41-230 49-245 (717)
380 KOG4499 Ca2+-binding protein R 97.0 0.064 1.4E-06 39.0 12.6 104 93-211 160-263 (310)
381 COG3204 Uncharacterized protei 96.9 0.11 2.4E-06 39.3 18.7 206 23-269 83-301 (316)
382 PHA02713 hypothetical protein; 96.8 0.059 1.3E-06 45.8 13.7 68 170-239 463-541 (557)
383 KOG1916 Nuclear protein, conta 96.8 0.00053 1.2E-08 58.5 1.4 96 3-121 153-264 (1283)
384 TIGR02604 Piru_Ver_Nterm putat 96.8 0.2 4.2E-06 40.3 16.2 98 162-270 74-202 (367)
385 KOG2280 Vacuolar assembly/sort 96.8 0.2 4.3E-06 42.9 15.7 39 160-198 217-255 (829)
386 PF06433 Me-amine-dh_H: Methyl 96.8 0.17 3.8E-06 39.4 15.9 169 41-240 147-329 (342)
387 cd00216 PQQ_DH Dehydrogenases 96.8 0.26 5.6E-06 41.3 20.0 62 179-240 173-273 (488)
388 PF15390 DUF4613: Domain of un 96.7 0.11 2.4E-06 43.1 13.7 111 162-279 59-184 (671)
389 PF12234 Rav1p_C: RAVE protein 96.7 0.086 1.9E-06 44.8 13.5 109 163-279 33-154 (631)
390 PF15390 DUF4613: Domain of un 96.7 0.14 3.1E-06 42.5 14.0 122 91-230 57-185 (671)
391 PF10313 DUF2415: Uncharacteri 96.7 0.013 2.9E-07 30.0 5.4 32 202-233 1-35 (43)
392 PF14870 PSII_BNR: Photosynthe 96.7 0.2 4.4E-06 38.7 14.5 111 160-274 145-255 (302)
393 PF05096 Glu_cyclase_2: Glutam 96.7 0.18 3.9E-06 37.9 19.3 199 17-269 35-249 (264)
394 PF12234 Rav1p_C: RAVE protein 96.6 0.16 3.4E-06 43.3 14.4 115 41-188 41-155 (631)
395 PF10313 DUF2415: Uncharacteri 96.6 0.014 3.1E-07 29.9 5.3 31 161-191 2-35 (43)
396 KOG3630 Nuclear pore complex, 96.6 0.027 5.8E-07 50.0 10.1 154 26-218 101-260 (1405)
397 PF10647 Gmad1: Lipoprotein Lp 96.6 0.2 4.3E-06 37.9 17.9 109 162-272 68-186 (253)
398 PF08728 CRT10: CRT10; InterP 96.6 0.2 4.3E-06 43.2 14.7 113 161-279 102-244 (717)
399 COG3490 Uncharacterized protei 96.5 0.22 4.8E-06 37.6 17.4 175 32-239 120-318 (366)
400 PF02897 Peptidase_S9_N: Proly 96.5 0.083 1.8E-06 43.2 12.2 101 162-270 126-245 (414)
401 PF14761 HPS3_N: Hermansky-Pud 96.5 0.19 4.1E-06 36.3 13.5 162 42-230 29-213 (215)
402 KOG4499 Ca2+-binding protein R 96.5 0.21 4.6E-06 36.5 16.7 91 163-261 161-263 (310)
403 TIGR03118 PEPCTERM_chp_1 conse 96.5 0.27 5.8E-06 37.6 20.2 211 26-279 23-277 (336)
404 PF10168 Nup88: Nuclear pore c 96.4 0.15 3.2E-06 44.5 13.5 74 160-233 85-181 (717)
405 PHA03098 kelch-like protein; P 96.4 0.39 8.4E-06 40.8 16.1 66 170-237 389-470 (534)
406 PF10168 Nup88: Nuclear pore c 96.4 0.6 1.3E-05 40.9 21.0 102 26-132 85-189 (717)
407 COG3204 Uncharacterized protei 96.4 0.15 3.2E-06 38.6 11.4 117 162-278 88-207 (316)
408 PF14870 PSII_BNR: Photosynthe 96.3 0.34 7.4E-06 37.5 15.6 155 25-228 144-301 (302)
409 PF14655 RAB3GAP2_N: Rab3 GTPa 96.1 0.11 2.3E-06 42.1 10.4 81 160-240 308-407 (415)
410 PF14583 Pectate_lyase22: Olig 95.8 0.76 1.6E-05 36.7 18.4 113 164-278 242-378 (386)
411 KOG4441 Proteins containing BT 95.7 1.2 2.6E-05 38.2 15.6 66 170-237 380-458 (571)
412 PF05096 Glu_cyclase_2: Glutam 95.6 0.68 1.5E-05 34.9 16.4 133 42-219 101-249 (264)
413 PHA03098 kelch-like protein; P 95.6 1.3 2.7E-05 37.8 15.7 64 170-235 437-515 (534)
414 PF02897 Peptidase_S9_N: Proly 95.5 1.2 2.5E-05 36.6 22.1 159 28-234 126-312 (414)
415 KOG1897 Damage-specific DNA bi 95.4 1.8 3.9E-05 38.7 20.8 102 164-276 779-893 (1096)
416 PF07569 Hira: TUP1-like enhan 95.4 0.13 2.7E-06 37.9 7.7 68 209-279 18-93 (219)
417 KOG4460 Nuclear pore complex, 95.4 0.75 1.6E-05 38.0 12.3 79 161-239 105-206 (741)
418 PF07569 Hira: TUP1-like enhan 95.3 0.29 6.3E-06 36.0 9.3 73 166-239 17-103 (219)
419 PF07995 GSDH: Glucose / Sorbo 95.1 0.98 2.1E-05 35.8 12.4 104 162-272 4-134 (331)
420 PF14583 Pectate_lyase22: Olig 95.1 1.4 3E-05 35.2 14.3 81 180-267 167-253 (386)
421 KOG2247 WD40 repeat-containing 94.9 0.0049 1.1E-07 49.4 -0.9 145 28-224 37-181 (615)
422 PF14727 PHTB1_N: PTHB1 N-term 94.9 1.8 3.8E-05 35.4 15.6 146 105-278 38-201 (418)
423 PF14727 PHTB1_N: PTHB1 N-term 94.8 1.8 4E-05 35.3 19.1 193 41-277 145-356 (418)
424 PF10647 Gmad1: Lipoprotein Lp 94.7 1.4 3E-05 33.4 20.6 148 27-224 25-188 (253)
425 PF11715 Nup160: Nucleoporin N 94.7 0.34 7.4E-06 41.3 9.5 72 169-240 156-257 (547)
426 PHA02790 Kelch-like protein; P 94.5 2.5 5.4E-05 35.5 15.7 90 170-272 362-456 (480)
427 PF13449 Phytase-like: Esteras 94.5 1.9 4.2E-05 34.1 12.6 110 161-271 21-166 (326)
428 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.4 0.82 1.8E-05 38.7 10.8 60 181-241 441-500 (527)
429 KOG1900 Nuclear pore complex, 94.3 1 2.3E-05 41.3 11.5 71 161-232 180-273 (1311)
430 COG5167 VID27 Protein involved 94.3 1.4 3E-05 36.4 11.1 61 170-231 572-632 (776)
431 TIGR02604 Piru_Ver_Nterm putat 94.2 2.4 5.2E-05 34.2 15.8 60 162-222 126-204 (367)
432 KOG2280 Vacuolar assembly/sort 94.1 3.7 8E-05 35.7 13.9 40 201-240 216-255 (829)
433 KOG2377 Uncharacterized conser 94.0 1.8 4E-05 35.2 11.2 99 161-269 68-171 (657)
434 PF14269 Arylsulfotran_2: Aryl 94.0 2.3 4.9E-05 33.2 13.0 97 180-279 95-218 (299)
435 PF05694 SBP56: 56kDa selenium 93.9 0.97 2.1E-05 36.6 9.6 123 3-131 222-351 (461)
436 PF12657 TFIIIC_delta: Transcr 93.8 0.96 2.1E-05 31.9 8.8 27 252-278 86-118 (173)
437 TIGR02276 beta_rpt_yvtn 40-res 93.8 0.44 9.6E-06 24.1 5.9 40 169-209 1-41 (42)
438 PF11635 Med16: Mediator compl 93.5 5.3 0.00012 35.7 16.2 67 160-226 260-345 (753)
439 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.5 4.3 9.4E-05 34.6 16.3 74 164-237 238-339 (527)
440 PRK13684 Ycf48-like protein; P 93.3 3.3 7.2E-05 32.9 16.2 65 162-229 262-329 (334)
441 KOG1897 Damage-specific DNA bi 93.1 6.4 0.00014 35.5 20.4 97 170-276 839-937 (1096)
442 COG4257 Vgb Streptogramin lyas 93.1 3 6.5E-05 31.6 15.6 110 162-279 150-260 (353)
443 KOG2247 WD40 repeat-containing 93.1 0.18 3.8E-06 41.0 4.4 91 2-120 96-186 (615)
444 PF05694 SBP56: 56kDa selenium 92.9 4.4 9.5E-05 33.1 14.0 135 106-261 89-254 (461)
445 TIGR03606 non_repeat_PQQ dehyd 92.8 5 0.00011 33.3 14.0 52 162-213 32-90 (454)
446 PF11715 Nup160: Nucleoporin N 92.6 0.97 2.1E-05 38.6 8.6 36 162-197 217-256 (547)
447 COG4590 ABC-type uncharacteriz 92.5 5.2 0.00011 32.8 12.4 160 86-277 216-382 (733)
448 PRK10115 protease 2; Provision 92.5 2.7 5.8E-05 37.1 11.1 70 162-233 129-209 (686)
449 COG5167 VID27 Protein involved 92.4 5.7 0.00012 33.1 14.9 53 212-272 572-624 (776)
450 PF14655 RAB3GAP2_N: Rab3 GTPa 92.3 3.4 7.4E-05 33.8 10.7 37 21-61 303-339 (415)
451 PF12657 TFIIIC_delta: Transcr 92.3 2.8 6E-05 29.6 9.3 32 91-122 86-121 (173)
452 TIGR03074 PQQ_membr_DH membran 91.9 5.2 0.00011 35.7 12.1 70 171-240 194-287 (764)
453 KOG1916 Nuclear protein, conta 91.8 0.11 2.5E-06 45.3 2.0 89 181-278 153-262 (1283)
454 PHA02790 Kelch-like protein; P 91.7 7.3 0.00016 32.8 15.3 60 170-234 407-473 (480)
455 PF10214 Rrn6: RNA polymerase 91.5 10 0.00022 34.2 23.6 190 23-232 77-277 (765)
456 PF13449 Phytase-like: Esteras 91.5 5.9 0.00013 31.4 17.9 168 90-268 19-231 (326)
457 PF10214 Rrn6: RNA polymerase 91.2 11 0.00024 34.0 19.6 160 88-262 77-257 (765)
458 smart00564 PQQ beta-propeller 91.1 0.83 1.8E-05 21.6 4.1 25 173-197 8-32 (33)
459 COG5276 Uncharacterized conser 90.9 6.1 0.00013 30.4 16.7 142 92-270 88-232 (370)
460 COG3823 Glutamine cyclotransfe 90.7 5 0.00011 29.2 13.1 101 168-269 137-247 (262)
461 TIGR02276 beta_rpt_yvtn 40-res 90.5 1.4 2.9E-05 22.3 5.6 30 211-240 1-31 (42)
462 KOG2377 Uncharacterized conser 90.2 9.4 0.0002 31.4 11.7 104 88-216 64-168 (657)
463 KOG4460 Nuclear pore complex, 90.2 6.8 0.00015 32.8 10.3 92 26-123 104-199 (741)
464 KOG1983 Tomosyn and related SN 90.1 7 0.00015 36.1 11.6 32 25-60 35-66 (993)
465 TIGR03074 PQQ_membr_DH membran 89.9 14 0.00031 33.1 17.2 61 180-240 413-486 (764)
466 PF11635 Med16: Mediator compl 89.6 15 0.00033 33.0 19.5 75 202-276 260-345 (753)
467 PF01011 PQQ: PQQ enzyme repea 89.5 1.6 3.5E-05 21.7 4.7 27 173-199 2-28 (38)
468 PF12341 DUF3639: Protein of u 89.4 1.2 2.7E-05 20.3 3.7 26 26-57 2-27 (27)
469 COG3823 Glutamine cyclotransfe 89.4 6.6 0.00014 28.6 11.8 127 47-219 107-247 (262)
470 PF07995 GSDH: Glucose / Sorbo 89.3 9.6 0.00021 30.3 19.8 71 202-276 253-330 (331)
471 PF14761 HPS3_N: Hermansky-Pud 89.0 2.9 6.4E-05 30.4 6.8 56 172-228 29-92 (215)
472 smart00564 PQQ beta-propeller 88.7 1.6 3.5E-05 20.6 4.3 26 214-239 7-32 (33)
473 PF12768 Rax2: Cortical protei 88.1 10 0.00023 29.2 10.3 76 181-260 16-97 (281)
474 PRK10115 protease 2; Provision 88.1 18 0.0004 32.1 24.8 30 27-60 128-162 (686)
475 KOG1900 Nuclear pore complex, 87.7 12 0.00025 35.1 10.9 169 2-190 98-273 (1311)
476 PF14781 BBS2_N: Ciliary BBSom 87.7 6.4 0.00014 26.3 12.3 100 165-276 4-120 (136)
477 COG5290 IkappaB kinase complex 87.6 20 0.00044 31.9 13.0 70 163-234 250-327 (1243)
478 COG4880 Secreted protein conta 87.2 15 0.00032 30.0 12.5 82 24-128 426-509 (603)
479 PF03088 Str_synth: Strictosid 87.0 5.3 0.00011 24.6 8.0 41 178-219 34-74 (89)
480 TIGR03118 PEPCTERM_chp_1 conse 86.9 13 0.00028 29.0 21.6 90 169-261 210-307 (336)
481 PF01011 PQQ: PQQ enzyme repea 86.9 2.6 5.6E-05 20.9 5.4 27 215-241 2-28 (38)
482 PF02333 Phytase: Phytase; In 86.8 15 0.00033 29.7 16.3 190 2-231 77-290 (381)
483 TIGR03606 non_repeat_PQQ dehyd 86.5 18 0.00038 30.2 18.2 62 24-102 28-90 (454)
484 PF12768 Rax2: Cortical protei 85.3 14 0.0003 28.6 9.1 52 3-60 16-73 (281)
485 PLN00033 photosystem II stabil 85.2 19 0.00042 29.5 18.0 107 162-278 283-396 (398)
486 COG4590 ABC-type uncharacteriz 85.2 9.5 0.00021 31.4 8.3 174 20-237 215-392 (733)
487 COG1520 FOG: WD40-like repeat 84.8 18 0.00039 29.2 10.2 69 172-241 69-139 (370)
488 KOG2109 WD40 repeat protein [G 84.2 0.69 1.5E-05 39.2 1.9 89 183-273 297-390 (788)
489 KOG3522 Predicted guanine nucl 83.4 33 0.00073 30.7 11.4 73 162-238 629-704 (925)
490 TIGR02171 Fb_sc_TIGR02171 Fibr 82.3 16 0.00035 33.0 9.2 59 173-232 321-386 (912)
491 PF01436 NHL: NHL repeat; Int 81.3 4 8.6E-05 18.6 4.6 25 204-228 4-28 (28)
492 KOG3616 Selective LIM binding 80.9 3.4 7.4E-05 36.1 4.7 34 202-235 15-48 (1636)
493 COG5290 IkappaB kinase complex 80.5 25 0.00055 31.4 9.5 50 162-212 298-347 (1243)
494 PF03088 Str_synth: Strictosid 80.2 11 0.00025 23.2 8.3 43 218-269 32-74 (89)
495 PF07250 Glyoxal_oxid_N: Glyox 79.5 14 0.00031 27.8 7.1 87 183-273 48-139 (243)
496 PF13570 PQQ_3: PQQ-like domai 79.4 6.2 0.00013 19.7 4.8 21 212-232 20-40 (40)
497 KOG3522 Predicted guanine nucl 78.1 9.8 0.00021 33.8 6.5 69 197-273 622-690 (925)
498 PF14779 BBS1: Ciliary BBSome 78.1 28 0.0006 26.5 17.3 55 173-228 197-255 (257)
499 PF07676 PD40: WD40-like Beta 77.7 6.9 0.00015 19.3 5.0 29 90-119 8-38 (39)
500 PF07250 Glyoxal_oxid_N: Glyox 77.7 28 0.0006 26.3 12.0 75 164-240 122-206 (243)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.6e-46 Score=274.96 Aligned_cols=220 Identities=23% Similarity=0.310 Sum_probs=199.0
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
+|.+++|+.... ..+..+.+|...|.++.|+|.. ++..||+++.||++++|++.+ ..
T Consensus 196 sG~~kvW~~~~~--~~~~~l~gH~~~v~~~~fhP~~--~~~~lat~s~Dgtvklw~~~~-------------------e~ 252 (459)
T KOG0272|consen 196 SGLVKVWSVPQC--NLLQTLRGHTSRVGAAVFHPVD--SDLNLATASADGTVKLWKLSQ-------------------ET 252 (459)
T ss_pred CCceeEeecCCc--ceeEEEeccccceeeEEEccCC--CccceeeeccCCceeeeccCC-------------------Cc
Confidence 699999998777 5588999999999999999930 266899999999999999998 68
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
++..+.+|...|..++|+|+|+ +|+|++.|.+-++||+++. .......||. . .
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk---~ElL~QEGHs-~---------------------~ 305 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETK---SELLLQEGHS-K---------------------G 305 (459)
T ss_pred chhhhhcchhhheeeeecCCCc--eeeecccccchhhcccccc---hhhHhhcccc-c---------------------c
Confidence 8899999999999999999999 9999999999999998764 2222333322 2 3
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
|.+++|.|||.++++|+.|..-+|||+++++++..+.+|..+|.+|+|+|+|..|+|||.|++++|||++..+++.++
T Consensus 306 v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i-- 383 (459)
T KOG0272|consen 306 VFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI-- 383 (459)
T ss_pred cceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec--
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CccccccCcceeeeEEEEcC-CCCEEEEEcCcceEEeCC
Q 023643 242 VKDKQLKGVISCVSCITLDA-SESWLVRVRATNYVILFS 279 (279)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd 279 (279)
.+|..-|+.|+|+| .|.+|+|++.|+++++|+
T Consensus 384 ------pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs 416 (459)
T KOG0272|consen 384 ------PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWS 416 (459)
T ss_pred ------ccccchhhheEecccCCeEEEEcccCcceeeec
Confidence 79999999999999 789999999999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.6e-45 Score=267.49 Aligned_cols=242 Identities=21% Similarity=0.249 Sum_probs=199.8
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
|-++|+||+.+.. .+.+.++|..-|.|++|+| |+..||+|+.||+|++||..++ ..
T Consensus 136 D~TvR~WD~~TeT--p~~t~KgH~~WVlcvawsP----Dgk~iASG~~dg~I~lwdpktg------------------~~ 191 (480)
T KOG0271|consen 136 DTTVRLWDLDTET--PLFTCKGHKNWVLCVAWSP----DGKKIASGSKDGSIRLWDPKTG------------------QQ 191 (480)
T ss_pred CceEEeeccCCCC--cceeecCCccEEEEEEECC----CcchhhccccCCeEEEecCCCC------------------Cc
Confidence 6689999999874 4788999999999999999 9999999999999999999986 45
Q ss_pred ccccccCCccCeEEEEecCCC---CceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecC-----------
Q 023643 82 PDGFLHGHDGPAYDVKFYGGN---EDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNH----------- 147 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~---~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 147 (279)
....+.+|...|++++|.|-. ...+|++++.||+++|||+... .+...+.+ |..++.++...
T Consensus 192 ~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~---~~~~~lsg-HT~~VTCvrwGG~gliySgS~D 267 (480)
T KOG0271|consen 192 IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG---TCVRTLSG-HTASVTCVRWGGEGLIYSGSQD 267 (480)
T ss_pred ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc---eEEEEecc-CccceEEEEEcCCceEEecCCC
Confidence 667899999999999998732 1238999999999999998542 11111111 11111111000
Q ss_pred --------------------------------------------------------------------------------
Q 023643 148 -------------------------------------------------------------------------------- 147 (279)
Q Consensus 148 -------------------------------------------------------------------------------- 147 (279)
T Consensus 268 rtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~t 347 (480)
T KOG0271|consen 268 RTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFT 347 (480)
T ss_pred ceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCce
Confidence
Q ss_pred -------CCCCcc-ccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEe
Q 023643 148 -------QHKGPW-GALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTG 219 (279)
Q Consensus 148 -------~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 219 (279)
....++ ....|..-|+.+.|+||++++++++-|..|++||.++|+.+.+|++|-++|+.++|+.|.++|++|
T Consensus 348 lflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~ 427 (480)
T KOG0271|consen 348 LFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSG 427 (480)
T ss_pred EEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEc
Confidence 000000 002344568999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 220 SEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 220 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
|.|.++++||+++.+....+ .+|...|.++.|+|||..+++|+.|..+++|.
T Consensus 428 SkDsTLKvw~V~tkKl~~DL--------pGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 428 SKDSTLKVWDVRTKKLKQDL--------PGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCCceEEEEEeeeeeecccC--------CCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999988888 78999999999999999999999999999994
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-45 Score=272.07 Aligned_cols=219 Identities=19% Similarity=0.260 Sum_probs=203.3
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
+||++++|++++. ..+..+.+|...|..++|+| +|++|+|++.|.+-++||+.+ .
T Consensus 239 ~Dgtvklw~~~~e--~~l~~l~gH~~RVs~VafHP----sG~~L~TasfD~tWRlWD~~t-------------------k 293 (459)
T KOG0272|consen 239 ADGTVKLWKLSQE--TPLQDLEGHLARVSRVAFHP----SGKFLGTASFDSTWRLWDLET-------------------K 293 (459)
T ss_pred cCCceeeeccCCC--cchhhhhcchhhheeeeecC----CCceeeecccccchhhccccc-------------------c
Confidence 5999999999887 45889999999999999999 999999999999999999999 5
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
..+....||...|.+++|.|+|. +++|||.|..-+|||++++ .++..+.+ |.+
T Consensus 294 ~ElL~QEGHs~~v~~iaf~~DGS--L~~tGGlD~~~RvWDlRtg---r~im~L~g-H~k--------------------- 346 (459)
T KOG0272|consen 294 SELLLQEGHSKGVFSIAFQPDGS--LAATGGLDSLGRVWDLRTG---RCIMFLAG-HIK--------------------- 346 (459)
T ss_pred hhhHhhcccccccceeEecCCCc--eeeccCccchhheeecccC---cEEEEecc-ccc---------------------
Confidence 66777889999999999999998 9999999999999998764 56666666 443
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcC-CCcEEEEecCCCeEEEEeCCCCceEEEe
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARN-STNQIVTGSEDGTARIWDCKSGKCIKVI 239 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 239 (279)
+|.+++|+|+|..|++|+.|++++|||++..+++.++.+|.+-|+.+.|+| .|.+|++++.|++++||..++.++++.+
T Consensus 347 ~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL 426 (459)
T KOG0272|consen 347 EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL 426 (459)
T ss_pred ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh
Confidence 368999999999999999999999999999999999999999999999999 6899999999999999999999999999
Q ss_pred cCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 240 DPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 240 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+|...|.++.+++++.+++|++.|.++++|.
T Consensus 427 --------aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 427 --------AGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred --------cCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 79999999999999999999999999999994
No 4
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8e-43 Score=275.96 Aligned_cols=204 Identities=20% Similarity=0.335 Sum_probs=186.1
Q ss_pred eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643 18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK 97 (279)
Q Consensus 18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 97 (279)
.+++-+|.++|+.+.|+| +.++|++++.|+++|+|.+.+ ...+-.+++|..||..+.
T Consensus 444 ~~~L~GH~GPVyg~sFsP----d~rfLlScSED~svRLWsl~t-------------------~s~~V~y~GH~~PVwdV~ 500 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFSP----DRRFLLSCSEDSSVRLWSLDT-------------------WSCLVIYKGHLAPVWDVQ 500 (707)
T ss_pred eEEeecCCCceeeeeecc----cccceeeccCCcceeeeeccc-------------------ceeEEEecCCCcceeeEE
Confidence 345789999999999999 899999999999999999999 677778889999999999
Q ss_pred ecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe
Q 023643 98 FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA 177 (279)
Q Consensus 98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 177 (279)
|+|.|- +|||+|.|++-++|..... ...+.+.++- ..|.|+.|+|+..++++|
T Consensus 501 F~P~Gy--YFatas~D~tArLWs~d~~---~PlRifaghl----------------------sDV~cv~FHPNs~Y~aTG 553 (707)
T KOG0263|consen 501 FAPRGY--YFATASHDQTARLWSTDHN---KPLRIFAGHL----------------------SDVDCVSFHPNSNYVATG 553 (707)
T ss_pred ecCCce--EEEecCCCceeeeeecccC---Cchhhhcccc----------------------cccceEEECCcccccccC
Confidence 999986 9999999999999997542 2222333321 237899999999999999
Q ss_pred cCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEE
Q 023643 178 AGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCI 257 (279)
Q Consensus 178 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 257 (279)
+.|.++++||..+|..++.|.+|.++|.+++|+|+|++|++|+.||.|.+||+.+++.+..+ .+|++.|.++
T Consensus 554 SsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l--------~~Ht~ti~Sl 625 (707)
T KOG0263|consen 554 SSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL--------KGHTGTIYSL 625 (707)
T ss_pred CCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh--------hcccCceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999998 7899999999
Q ss_pred EEcCCCCEEEEEcCcceEEeCC
Q 023643 258 TLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 258 ~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.|+.+|..||+|+.|++|++||
T Consensus 626 sFS~dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 626 SFSRDGNVLASGGADNSVRLWD 647 (707)
T ss_pred EEecCCCEEEecCCCCeEEEEE
Confidence 9999999999999999999997
No 5
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.5e-41 Score=232.17 Aligned_cols=219 Identities=18% Similarity=0.239 Sum_probs=189.2
Q ss_pred CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccc
Q 023643 3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEP 82 (279)
Q Consensus 3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (279)
-.||+||+++.....+.++.+|...|+++.|.. +|+.+++|+.||+++|||++. ...
T Consensus 61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~----dgrWMyTgseDgt~kIWdlR~-------------------~~~ 117 (311)
T KOG0315|consen 61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC----DGRWMYTGSEDGTVKIWDLRS-------------------LSC 117 (311)
T ss_pred CeeEEEEccCCCCCceeEEeccCCceEEEEEee----cCeEEEecCCCceEEEEeccC-------------------ccc
Confidence 368999999988778899999999999999999 999999999999999999997 344
Q ss_pred cccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCc
Q 023643 83 DGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPEN 162 (279)
Q Consensus 83 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 162 (279)
.+.++ |..+|+++..+|+.. .|++|..+|.|++||+.+.... ..+..+.. ..|
T Consensus 118 qR~~~-~~spVn~vvlhpnQt--eLis~dqsg~irvWDl~~~~c~---~~liPe~~---------------------~~i 170 (311)
T KOG0315|consen 118 QRNYQ-HNSPVNTVVLHPNQT--ELISGDQSGNIRVWDLGENSCT---HELIPEDD---------------------TSI 170 (311)
T ss_pred chhcc-CCCCcceEEecCCcc--eEEeecCCCcEEEEEccCCccc---cccCCCCC---------------------cce
Confidence 44444 779999999999987 8999999999999998754221 11111111 137
Q ss_pred eeEEEcCCCCeEEEecCCCeEEEEecCCC------cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC-ce
Q 023643 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESS------RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG-KC 235 (279)
Q Consensus 163 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~-~~ 235 (279)
.++...|+|.+++.+.+.|..++|++-.. +++..++.|++.+..+.+||++++|+++|.|.+++||+.... +.
T Consensus 171 ~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kl 250 (311)
T KOG0315|consen 171 QSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKL 250 (311)
T ss_pred eeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceee
Confidence 89999999999999999999999998653 567788999999999999999999999999999999999887 45
Q ss_pred EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 236 IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
...+ .+|..+++.++||.||+||+||+.|+.+++||
T Consensus 251 e~~l--------~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 251 ELVL--------TGHQRWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred EEEe--------ecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence 5555 78999999999999999999999999999997
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.1e-42 Score=250.32 Aligned_cols=213 Identities=18% Similarity=0.283 Sum_probs=183.1
Q ss_pred ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEE
Q 023643 17 ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDV 96 (279)
Q Consensus 17 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 96 (279)
+...+.+|.++|.+++|+| ++..||+|+.|.++|+||+.+ ..+..+.++|...|.|+
T Consensus 107 CssS~~GH~e~Vl~~~fsp----~g~~l~tGsGD~TvR~WD~~T-------------------eTp~~t~KgH~~WVlcv 163 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSP----TGSRLVTGSGDTTVRLWDLDT-------------------ETPLFTCKGHKNWVLCV 163 (480)
T ss_pred eccccCCCCCcEEEEEecC----CCceEEecCCCceEEeeccCC-------------------CCcceeecCCccEEEEE
Confidence 3457789999999999999 999999999999999999999 78899999999999999
Q ss_pred EecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC-----CC
Q 023643 97 KFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP-----QG 171 (279)
Q Consensus 97 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~ 171 (279)
+|+|+++ .|++|+.||+|++||..+++ +....+.+| . +.|++++|.| ..
T Consensus 164 awsPDgk--~iASG~~dg~I~lwdpktg~--~~g~~l~gH-~---------------------K~It~Lawep~hl~p~~ 217 (480)
T KOG0271|consen 164 AWSPDGK--KIASGSKDGSIRLWDPKTGQ--QIGRALRGH-K---------------------KWITALAWEPLHLVPPC 217 (480)
T ss_pred EECCCcc--hhhccccCCeEEEecCCCCC--cccccccCc-c---------------------cceeEEeecccccCCCc
Confidence 9999999 99999999999999976542 222233332 2 2478999876 56
Q ss_pred CeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCcc-------
Q 023643 172 GAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKD------- 244 (279)
Q Consensus 172 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~------- 244 (279)
++|++++.||.|+|||+..+.++..+.+|..+|+|+.|-.+ .+|++||.|++|++|+...|++...+..|..
T Consensus 218 r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lal 296 (480)
T KOG0271|consen 218 RRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLAL 296 (480)
T ss_pred cceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeec
Confidence 79999999999999999999999999999999999999643 6899999999999999888776655543321
Q ss_pred ----------------------------------------------------------------ccccCcceeeeEEEEc
Q 023643 245 ----------------------------------------------------------------KQLKGVISCVSCITLD 260 (279)
Q Consensus 245 ----------------------------------------------------------------~~~~~~~~~v~~~~~~ 260 (279)
....+|..-|+.+.|+
T Consensus 297 sTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fS 376 (480)
T KOG0271|consen 297 STDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFS 376 (480)
T ss_pred cchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEEC
Confidence 1446889999999999
Q ss_pred CCCCEEEEEcCcceEEeCC
Q 023643 261 ASESWLVRVRATNYVILFS 279 (279)
Q Consensus 261 ~~~~~l~~~~~d~~i~~wd 279 (279)
||++++|++|-|..|++||
T Consensus 377 Pd~r~IASaSFDkSVkLW~ 395 (480)
T KOG0271|consen 377 PDGRYIASASFDKSVKLWD 395 (480)
T ss_pred CCccEEEEeecccceeeee
Confidence 9999999999999999997
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.4e-41 Score=235.60 Aligned_cols=220 Identities=18% Similarity=0.313 Sum_probs=190.5
Q ss_pred CCCceeeecccccccc---ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccccee
Q 023643 1 MCGDSTNWDEDAYRKS---ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQL 77 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 77 (279)
+|-++.+|++.....+ ..+.+.+|...|..+..++ ++++.++++.|+++++||+.+
T Consensus 36 rDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~----dg~~alS~swD~~lrlWDl~~----------------- 94 (315)
T KOG0279|consen 36 RDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS----DGNFALSASWDGTLRLWDLAT----------------- 94 (315)
T ss_pred cceEEEEEEeccCccccCceeeeeeccceEecceEEcc----CCceEEeccccceEEEEEecC-----------------
Confidence 4678889987654433 3778999999999999999 999999999999999999998
Q ss_pred eeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643 78 LGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS 157 (279)
Q Consensus 78 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (279)
+++.+.|.+|...|.+++|+|+.. +++||+.|.+|++|++-. .+..........
T Consensus 95 --g~~t~~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g----~ck~t~~~~~~~------------------ 148 (315)
T KOG0279|consen 95 --GESTRRFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLG----VCKYTIHEDSHR------------------ 148 (315)
T ss_pred --CcEEEEEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecc----cEEEEEecCCCc------------------
Confidence 677889999999999999999998 999999999999999642 222222221101
Q ss_pred CCCCceeEEEcCC--CCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce
Q 023643 158 PVPENNAIAVDPQ--GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC 235 (279)
Q Consensus 158 ~~~~i~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~ 235 (279)
..|+|+.|+|+ ..+|++++.|+++++||+++.+....+.+|++.++.++++|||...++|+.||.+.+||++.++.
T Consensus 149 --~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ 226 (315)
T KOG0279|consen 149 --EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN 226 (315)
T ss_pred --CcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce
Confidence 14899999998 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 236 IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
++.+ .|...|.+++|+|+..+|+.+.. ..|+|||
T Consensus 227 lysl---------~a~~~v~sl~fspnrywL~~at~-~sIkIwd 260 (315)
T KOG0279|consen 227 LYSL---------EAFDIVNSLCFSPNRYWLCAATA-TSIKIWD 260 (315)
T ss_pred eEec---------cCCCeEeeEEecCCceeEeeccC-CceEEEe
Confidence 8887 67789999999998877777654 4599996
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.5e-39 Score=225.23 Aligned_cols=224 Identities=16% Similarity=0.204 Sum_probs=183.8
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
||++|+||+.++ +..+.+.+|...|.+++|+| |...+++|+.|.+|++|+... .
T Consensus 84 D~~lrlWDl~~g--~~t~~f~GH~~dVlsva~s~----dn~qivSGSrDkTiklwnt~g--------------------~ 137 (315)
T KOG0279|consen 84 DGTLRLWDLATG--ESTRRFVGHTKDVLSVAFST----DNRQIVSGSRDKTIKLWNTLG--------------------V 137 (315)
T ss_pred cceEEEEEecCC--cEEEEEEecCCceEEEEecC----CCceeecCCCcceeeeeeecc--------------------c
Confidence 899999999987 44778999999999999999 899999999999999999985 3
Q ss_pred ccccccC--CccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643 82 PDGFLHG--HDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV 159 (279)
Q Consensus 82 ~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (279)
+..++.. |.+.|.|++|+|+..+.+|+++|.|++|++||+++.+ ....+.++ .
T Consensus 138 ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~---l~~~~~gh----------------------~ 192 (315)
T KOG0279|consen 138 CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ---LRTTFIGH----------------------S 192 (315)
T ss_pred EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc---hhhccccc----------------------c
Confidence 3334433 3789999999999544599999999999999987542 22222221 1
Q ss_pred CCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEe
Q 023643 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239 (279)
Q Consensus 160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 239 (279)
+.++.++++|||.++++|+.||.+.+||++.++.+..+. |...|.+++|+|+...|+.+. +..|+|||+.++.++..+
T Consensus 193 ~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 193 GYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEEL 270 (315)
T ss_pred ccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhc
Confidence 237999999999999999999999999999999988886 888999999999877776664 555999999999988887
Q ss_pred cCCcccc-ccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 240 DPVKDKQ-LKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 240 ~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
.+..... .........+++|+++|..|++|-.|+.|++|
T Consensus 271 ~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 271 KLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVW 310 (315)
T ss_pred cccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence 6543211 12234567788999999999999999999998
No 9
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.3e-38 Score=236.57 Aligned_cols=235 Identities=22% Similarity=0.318 Sum_probs=196.7
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccc-----
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQ----- 75 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~----- 75 (279)
.||.+|+|+..+ ..+.++..|.++|.++.|+. +|++|++++.||++.+||.-++.....+.+......
T Consensus 255 ~~G~~riw~~~G---~l~~tl~~HkgPI~slKWnk----~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~ 327 (524)
T KOG0273|consen 255 EDGEARIWNKDG---NLISTLGQHKGPIFSLKWNK----KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ 327 (524)
T ss_pred cCcEEEEEecCc---hhhhhhhccCCceEEEEEcC----CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe
Confidence 489999999888 55778889999999999999 899999999999999999988776665554433311
Q ss_pred -----------------eeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcc
Q 023643 76 -----------------QLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHV 138 (279)
Q Consensus 76 -----------------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 138 (279)
++-..+|+.++.+|.++|.++.|+|.+. +|+|+|.|++++||..... .....+..+
T Consensus 328 ~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~--LLaS~SdD~TlkiWs~~~~---~~~~~l~~H-- 400 (524)
T KOG0273|consen 328 SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS--LLASCSDDGTLKIWSMGQS---NSVHDLQAH-- 400 (524)
T ss_pred cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc--eEEEecCCCeeEeeecCCC---cchhhhhhh--
Confidence 0111678899999999999999999998 9999999999999996533 222222222
Q ss_pred cceEEeecCCCCCccccCCCCCCceeEEEcCCC---------CeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEE
Q 023643 139 KPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG---------GAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVA 209 (279)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~ 209 (279)
.+.|..+.|+|++ ..+++++.|++|++||+..+.++..|..|+.+|++++|
T Consensus 401 --------------------skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvaf 460 (524)
T KOG0273|consen 401 --------------------SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAF 460 (524)
T ss_pred --------------------ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEe
Confidence 2236777777754 36899999999999999999999999999999999999
Q ss_pred cCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 210 RNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 210 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
+|+|+++++|+.||.|.+|+.++++..+.+. -...|..++|+.+|.+|..+-.|+.+++-
T Consensus 461 S~~g~ylAsGs~dg~V~iws~~~~~l~~s~~---------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvl 520 (524)
T KOG0273|consen 461 SPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ---------GTGGIFELCWNAAGDKLGACASDGSVCVL 520 (524)
T ss_pred cCCCcEEEecCCCCeeEeccccchheeEeec---------CCCeEEEEEEcCCCCEEEEEecCCCceEE
Confidence 9999999999999999999999999999873 34569999999999999999999988764
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.3e-37 Score=220.40 Aligned_cols=226 Identities=19% Similarity=0.303 Sum_probs=194.7
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.+-|||.-+..+ ...++....-|..++|+| .++++|+|+-|+...||++.+...... .
T Consensus 75 qDGklIvWDs~TtnK--~haipl~s~WVMtCA~sP----Sg~~VAcGGLdN~Csiy~ls~~d~~g~-------------~ 135 (343)
T KOG0286|consen 75 QDGKLIVWDSFTTNK--VHAIPLPSSWVMTCAYSP----SGNFVACGGLDNKCSIYPLSTRDAEGN-------------V 135 (343)
T ss_pred cCCeEEEEEcccccc--eeEEecCceeEEEEEECC----CCCeEEecCcCceeEEEeccccccccc-------------c
Confidence 389999999666533 555666778999999999 899999999999999999986422111 2
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
...+.+.+|++.+.++.|.+++ .|+|+|.|.+.-+||+++. +....+.+|..
T Consensus 136 ~v~r~l~gHtgylScC~f~dD~---~ilT~SGD~TCalWDie~g---~~~~~f~GH~g---------------------- 187 (343)
T KOG0286|consen 136 RVSRELAGHTGYLSCCRFLDDN---HILTGSGDMTCALWDIETG---QQTQVFHGHTG---------------------- 187 (343)
T ss_pred eeeeeecCccceeEEEEEcCCC---ceEecCCCceEEEEEcccc---eEEEEecCCcc----------------------
Confidence 4456788999999999999966 7999999999999998654 44555555332
Q ss_pred CceeEEEcC-CCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEe
Q 023643 161 ENNAIAVDP-QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239 (279)
Q Consensus 161 ~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 239 (279)
.|.+++++| +++.+++|+.|+..++||++.+.+++.|.+|+..|.+++|.|+|.-+++|+.|++.++||+|..+.+..+
T Consensus 188 DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~y 267 (343)
T KOG0286|consen 188 DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVY 267 (343)
T ss_pred cEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeee
Confidence 378999999 9999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 240 DPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 240 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.. ..-..+|++++|+..|++|++|..|.++.+||
T Consensus 268 s~------~~~~~gitSv~FS~SGRlLfagy~d~~c~vWD 301 (343)
T KOG0286|consen 268 SH------DSIICGITSVAFSKSGRLLFAGYDDFTCNVWD 301 (343)
T ss_pred cc------CcccCCceeEEEcccccEEEeeecCCceeEee
Confidence 64 34456899999999999999999999999998
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-38 Score=229.36 Aligned_cols=241 Identities=20% Similarity=0.287 Sum_probs=200.9
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
|++|++||..+++. ...+++|.+.|..++|+. .|.+||+++.|-.+++||..+. .+
T Consensus 129 d~tikv~D~~tg~~--e~~LrGHt~sv~di~~~a----~Gk~l~tcSsDl~~~LWd~~~~------------------~~ 184 (406)
T KOG0295|consen 129 DATIKVFDTETGEL--ERSLRGHTDSVFDISFDA----SGKYLATCSSDLSAKLWDFDTF------------------FR 184 (406)
T ss_pred CceEEEEEccchhh--hhhhhccccceeEEEEec----CccEEEecCCccchhheeHHHH------------------HH
Confidence 88999999998854 889999999999999999 8999999999999999999875 67
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcc----------cceEEe-ecCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHV----------KPVLDL-VNHQHK 150 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~ 150 (279)
+++.+.+|+..|.+++|-|.+. ++++++.|.+|+.|++.++ .+...+.++.. ..+... .+..+-
T Consensus 185 c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg---~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl 259 (406)
T KOG0295|consen 185 CIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTG---YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTL 259 (406)
T ss_pred HHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccc---eeEEeccCchHhEEEEEecCCeeEEEecCCCceE
Confidence 8888999999999999999998 9999999999999998764 23333322211 011000 111111
Q ss_pred Cccc---------cCCCCCCceeEEEcCC---------------CCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEE
Q 023643 151 GPWG---------ALSPVPENNAIAVDPQ---------------GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHC 206 (279)
Q Consensus 151 ~~~~---------~~~~~~~i~~~~~~~~---------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~ 206 (279)
..|. ...++..|.|++|.|. ++.+.+++.|++|++||+.++.++.++.+|.++|+.
T Consensus 260 ~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~ 339 (406)
T KOG0295|consen 260 RVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRG 339 (406)
T ss_pred EEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeee
Confidence 1111 1234456888888763 248899999999999999999999999999999999
Q ss_pred EEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 207 IVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 207 i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
++|+|.|+||+++..|+++++||++++++...+ ..|...|+++.|+.+..+++||+-|.++++|.
T Consensus 340 ~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~--------~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 340 VAFSPGGKYILSCADDKTLRVWDLKNLQCMKTL--------EAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred eEEcCCCeEEEEEecCCcEEEEEeccceeeecc--------CCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 999999999999999999999999999999999 67888999999999999999999999999983
No 12
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1e-39 Score=236.76 Aligned_cols=211 Identities=25% Similarity=0.451 Sum_probs=186.1
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
|.+|+|||.+.. .+++.+.+|++.|.|+.|.. ..+++|++|.+|+|||+++ ++
T Consensus 216 DnTikiWD~n~~--~c~~~L~GHtGSVLCLqyd~------rviisGSSDsTvrvWDv~t-------------------ge 268 (499)
T KOG0281|consen 216 DNTIKIWDKNSL--ECLKILTGHTGSVLCLQYDE------RVIVSGSSDSTVRVWDVNT-------------------GE 268 (499)
T ss_pred cCceEEeccccH--HHHHhhhcCCCcEEeeeccc------eEEEecCCCceEEEEeccC-------------------Cc
Confidence 789999998887 56888999999999999976 6999999999999999999 89
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
++.++-+|...|..+.|+.. +++|++.|.++.+||+...........+.++. . +
T Consensus 269 ~l~tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr-A---------------------a 322 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHR-A---------------------A 322 (499)
T ss_pred hhhHHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhh-h---------------------h
Confidence 99999999999999999854 99999999999999987543322333333432 2 3
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
|+.+.|+ .+++++++.|.+|++|++.+.+.++++.+|.-.|-|+.+. ++++++||.|.+|++||+..|.++..+
T Consensus 323 VNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvL-- 396 (499)
T KOG0281|consen 323 VNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL-- 396 (499)
T ss_pred eeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHH--
Confidence 6788885 5699999999999999999999999999999999998874 899999999999999999999999999
Q ss_pred CccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 242 VKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+|+.-|.++.|+ .+.+++|+.||+|++||
T Consensus 397 ------eGHEeLvRciRFd--~krIVSGaYDGkikvWd 426 (499)
T KOG0281|consen 397 ------EGHEELVRCIRFD--NKRIVSGAYDGKIKVWD 426 (499)
T ss_pred ------hchHHhhhheeec--CceeeeccccceEEEEe
Confidence 7999999999995 67899999999999997
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.3e-37 Score=231.21 Aligned_cols=220 Identities=19% Similarity=0.232 Sum_probs=182.7
Q ss_pred ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED 104 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 104 (279)
...|++++|+. +|.+||+|+.||.+++|+.. +..+.++..|.+||.++.|+..+.
T Consensus 235 nkdVT~L~Wn~----~G~~LatG~~~G~~riw~~~--------------------G~l~~tl~~HkgPI~slKWnk~G~- 289 (524)
T KOG0273|consen 235 NKDVTSLDWNN----DGTLLATGSEDGEARIWNKD--------------------GNLISTLGQHKGPIFSLKWNKKGT- 289 (524)
T ss_pred cCCcceEEecC----CCCeEEEeecCcEEEEEecC--------------------chhhhhhhccCCceEEEEEcCCCC-
Confidence 46799999999 99999999999999999998 577888999999999999999998
Q ss_pred eEEEEeeCCCcEEEeecCCCccCcceeeeccCc-----------------ccceEEeecCCCCCccccCCCCCCceeEEE
Q 023643 105 ALLLSCGDDGRICGWRWKEFTESKVPINLQGNH-----------------VKPVLDLVNHQHKGPWGALSPVPENNAIAV 167 (279)
Q Consensus 105 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 167 (279)
+|++++.|+++.+||..+.... ....+.... ...+.-++-...........|.+.|.++.|
T Consensus 290 -yilS~~vD~ttilwd~~~g~~~-q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~ 367 (524)
T KOG0273|consen 290 -YILSGGVDGTTILWDAHTGTVK-QQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKW 367 (524)
T ss_pred -EEEeccCCccEEEEeccCceEE-EeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEE
Confidence 9999999999999997543211 111111100 001111111122222223447778999999
Q ss_pred cCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCC---------cEEEEecCCCeEEEEeCCCCceEEE
Q 023643 168 DPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNST---------NQIVTGSEDGTARIWDCKSGKCIKV 238 (279)
Q Consensus 168 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~---------~~l~~~~~d~~i~vwd~~~~~~~~~ 238 (279)
+|.+.+|++++.|++++||........+.+..|...|+.+.|+|.| ..+++++.|++|++||+..+.++.+
T Consensus 368 n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~ 447 (524)
T KOG0273|consen 368 NPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT 447 (524)
T ss_pred CCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe
Confidence 9999999999999999999999899999999999999999999864 3799999999999999999999999
Q ss_pred ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+ ..|..+|.+++|+|+|+++|+|+.||.|.+|+
T Consensus 448 f--------~kH~~pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 448 L--------MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred e--------ccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence 8 79999999999999999999999999999996
No 14
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.2e-37 Score=213.31 Aligned_cols=225 Identities=13% Similarity=0.226 Sum_probs=189.3
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.|.+||+|...++ .+..++....+.|..+...| ++..||+++.- .||+||+++.. .
T Consensus 18 YDhTIRfWqa~tG--~C~rTiqh~dsqVNrLeiTp----dk~~LAaa~~q-hvRlyD~~S~n-----------------p 73 (311)
T KOG0315|consen 18 YDHTIRFWQALTG--ICSRTIQHPDSQVNRLEITP----DKKDLAAAGNQ-HVRLYDLNSNN-----------------P 73 (311)
T ss_pred CcceeeeeehhcC--eEEEEEecCccceeeEEEcC----CcchhhhccCC-eeEEEEccCCC-----------------C
Confidence 4889999998888 55888887789999999999 89999998775 79999999864 4
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
.|+.++.+|++.|+++.|..++. .++|||.||+++|||++.. .+...++. ..
T Consensus 74 ~Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~---~~qR~~~~-----------------------~s 125 (311)
T KOG0315|consen 74 NPVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSL---SCQRNYQH-----------------------NS 125 (311)
T ss_pred CceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCc---ccchhccC-----------------------CC
Confidence 58899999999999999999998 9999999999999999852 11111111 11
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee-cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEe
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK-GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 239 (279)
+|+++..+|+...|++|..+|.|++||+....+.+.+. .....|.++...|+|.+++.+...|..++|++...+....+
T Consensus 126 pVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l 205 (311)
T KOG0315|consen 126 PVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASEL 205 (311)
T ss_pred CcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccc
Confidence 47999999999999999999999999999886666554 34578999999999999999999999999999876544444
Q ss_pred cCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 240 DPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 240 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+.. ++..|+..+..+.+||++++||++|.|.+++||+
T Consensus 206 ~P~~--k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn 243 (311)
T KOG0315|consen 206 EPVH--KFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWN 243 (311)
T ss_pred eEhh--heecccceEEEEEECCCCcEEEeecCCceEEEEe
Confidence 3322 3478999999999999999999999999999995
No 15
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9.3e-39 Score=235.55 Aligned_cols=219 Identities=15% Similarity=0.241 Sum_probs=192.2
Q ss_pred CCCceeeeccccccccceeee-eecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643 1 MCGDSTNWDEDAYRKSILKER-EILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG 79 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 79 (279)
.+|.|++|+++-.. ++.. ..|...|.+++|+| +...+++++.||+|+|||...
T Consensus 158 ~gG~iKyWqpnmnn---Vk~~~ahh~eaIRdlafSp----nDskF~t~SdDg~ikiWdf~~------------------- 211 (464)
T KOG0284|consen 158 KGGMIKYWQPNMNN---VKIIQAHHAEAIRDLAFSP----NDSKFLTCSDDGTIKIWDFRM------------------- 211 (464)
T ss_pred CCceEEecccchhh---hHHhhHhhhhhhheeccCC----CCceeEEecCCCeEEEEeccC-------------------
Confidence 37899999977643 3333 34559999999999 888999999999999999987
Q ss_pred ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643 80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV 159 (279)
Q Consensus 80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (279)
..+...+++|.-.|.+++|+|... +++++|.|..|++||.++. .++..+.++..
T Consensus 212 ~kee~vL~GHgwdVksvdWHP~kg--LiasgskDnlVKlWDprSg---~cl~tlh~HKn--------------------- 265 (464)
T KOG0284|consen 212 PKEERVLRGHGWDVKSVDWHPTKG--LIASGSKDNLVKLWDPRSG---SCLATLHGHKN--------------------- 265 (464)
T ss_pred CchhheeccCCCCcceeccCCccc--eeEEccCCceeEeecCCCc---chhhhhhhccc---------------------
Confidence 566677899999999999999987 9999999999999997654 45555554332
Q ss_pred CCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcC-CCcEEEEecCCCeEEEEeCCCCceEEE
Q 023643 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARN-STNQIVTGSEDGTARIWDCKSGKCIKV 238 (279)
Q Consensus 160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~ 238 (279)
.|..+.|+|++++|++++.|..++++|+++.+.++.+++|...++++.|+| ...+|.+|+.||.|..|.+...+++..
T Consensus 266 -tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~ 344 (464)
T KOG0284|consen 266 -TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGE 344 (464)
T ss_pred -eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccC
Confidence 378999999999999999999999999999999999999999999999999 578999999999999999987777777
Q ss_pred ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+. .+|...|++++|+|-|.+|++|+.|.++++|.
T Consensus 345 i~-------~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 345 IP-------PAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred CC-------cccccceeeeeccccceeEeecCCCcceeeec
Confidence 75 68999999999999999999999999999994
No 16
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-37 Score=241.66 Aligned_cols=219 Identities=19% Similarity=0.334 Sum_probs=198.9
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
.|+|.|||.++. ..++.+.....+|.+..|-+ ..+.+++|+.|..|+||+.++ .+
T Consensus 34 nG~V~IWnyetq--tmVksfeV~~~PvRa~kfia----RknWiv~GsDD~~IrVfnynt-------------------~e 88 (794)
T KOG0276|consen 34 NGDVQIWNYETQ--TMVKSFEVSEVPVRAAKFIA----RKNWIVTGSDDMQIRVFNYNT-------------------GE 88 (794)
T ss_pred cCeeEEEecccc--eeeeeeeecccchhhheeee----ccceEEEecCCceEEEEeccc-------------------ce
Confidence 699999998887 45888888889999999999 899999999999999999999 78
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
.+..|..|.+.|.+++.+|..+ +++|+|.|-+|++||.+. .-.+...+.+|.. .
T Consensus 89 kV~~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~--~wa~~qtfeGH~H----------------------y 142 (794)
T KOG0276|consen 89 KVKTFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWEN--EWACEQTFEGHEH----------------------Y 142 (794)
T ss_pred eeEEeeccccceeeeeecCCCC--eEEecCCccEEEEeeccC--ceeeeeEEcCcce----------------------E
Confidence 8999999999999999999998 999999999999999864 3344455555432 2
Q ss_pred ceeEEEcC-CCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCC--CcEEEEecCCCeEEEEeCCCCceEEE
Q 023643 162 NNAIAVDP-QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNS--TNQIVTGSEDGTARIWDCKSGKCIKV 238 (279)
Q Consensus 162 i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~ 238 (279)
|.+++|+| |.+.+++++-|++|++|.+.+..+..++++|...|.|+.|-+. ..+|++|+.|.+|+|||.++..|+++
T Consensus 143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T 222 (794)
T KOG0276|consen 143 VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT 222 (794)
T ss_pred EEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHH
Confidence 78999999 5669999999999999999999999999999999999999874 57999999999999999999999999
Q ss_pred ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+ .+|...|+.+.|+|.-.++++||+||++++|.
T Consensus 223 L--------eGHt~Nvs~v~fhp~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 223 L--------EGHTNNVSFVFFHPELPIIISGSEDGTVRIWN 255 (794)
T ss_pred h--------hcccccceEEEecCCCcEEEEecCCccEEEec
Confidence 9 79999999999999999999999999999994
No 17
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.1e-36 Score=214.34 Aligned_cols=206 Identities=17% Similarity=0.292 Sum_probs=181.9
Q ss_pred eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643 18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK 97 (279)
Q Consensus 18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 97 (279)
.+.+++|.+.|.++.|++ |.++|++++.||.+.|||.-+ ...++.+.-....|...+
T Consensus 48 rr~LkGH~~Ki~~~~ws~----Dsr~ivSaSqDGklIvWDs~T-------------------tnK~haipl~s~WVMtCA 104 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWST----DSRRIVSASQDGKLIVWDSFT-------------------TNKVHAIPLPSSWVMTCA 104 (343)
T ss_pred EEEecccccceeeeEecC----CcCeEEeeccCCeEEEEEccc-------------------ccceeEEecCceeEEEEE
Confidence 468899999999999999 999999999999999999988 455666666778899999
Q ss_pred ecCCCCceEEEEeeCCCcEEEeecCCCccC---cceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeE
Q 023643 98 FYGGNEDALLLSCGDDGRICGWRWKEFTES---KVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAI 174 (279)
Q Consensus 98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 174 (279)
|+|.++ +++.|+.|+...||++...... .....+.++ . +.+.|+.|-+ ...|
T Consensus 105 ~sPSg~--~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gH-t---------------------gylScC~f~d-D~~i 159 (343)
T KOG0286|consen 105 YSPSGN--FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGH-T---------------------GYLSCCRFLD-DNHI 159 (343)
T ss_pred ECCCCC--eEEecCcCceeEEEecccccccccceeeeeecCc-c---------------------ceeEEEEEcC-CCce
Confidence 999998 9999999999999999743111 122222222 2 2368899987 5678
Q ss_pred EEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcC-CCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCccee
Q 023643 175 FSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARN-STNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISC 253 (279)
Q Consensus 175 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 253 (279)
++++.|.+.-+||+++++.+..|.+|.+.|.+++++| +++.+++|+.|+..++||+|.+.+.+.+ .+|...
T Consensus 160 lT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF--------~ghesD 231 (343)
T KOG0286|consen 160 LTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF--------EGHESD 231 (343)
T ss_pred EecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEee--------cccccc
Confidence 9999999999999999999999999999999999999 8999999999999999999999999999 799999
Q ss_pred eeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 254 VSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 254 v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
|++++|.|+|.-+++|+.|++.++||
T Consensus 232 INsv~ffP~G~afatGSDD~tcRlyD 257 (343)
T KOG0286|consen 232 INSVRFFPSGDAFATGSDDATCRLYD 257 (343)
T ss_pred cceEEEccCCCeeeecCCCceeEEEe
Confidence 99999999999999999999999997
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.2e-38 Score=233.60 Aligned_cols=217 Identities=20% Similarity=0.325 Sum_probs=187.1
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
.|...+|+...... ...+..|..+|.++.|++ ++.++++|+.+|.|++|+.+- .
T Consensus 117 SGEFtLWNg~~fnF--EtilQaHDs~Vr~m~ws~----~g~wmiSgD~gG~iKyWqpnm--------------------n 170 (464)
T KOG0284|consen 117 SGEFTLWNGTSFNF--ETILQAHDSPVRTMKWSH----NGTWMISGDKGGMIKYWQPNM--------------------N 170 (464)
T ss_pred cccEEEecCceeeH--HHHhhhhcccceeEEEcc----CCCEEEEcCCCceEEecccch--------------------h
Confidence 57888999655432 234567999999999999 999999999999999999984 4
Q ss_pred ccccccCC-ccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 82 PDGFLHGH-DGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 82 ~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
.+..++.| ...|.+++|+|+.. .|++++.||+|+|||.... .....+.++.-
T Consensus 171 nVk~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~---kee~vL~GHgw---------------------- 223 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMP---KEERVLRGHGW---------------------- 223 (464)
T ss_pred hhHHhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCC---chhheeccCCC----------------------
Confidence 45556655 48999999999887 9999999999999997643 22233344322
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
.|.+++|+|.-.++++|+.|..|++||.++++++.++.+|...|..+.|+|++++|+++|.|..++++|+++.+.+.++
T Consensus 224 dVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~- 302 (464)
T KOG0284|consen 224 DVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY- 302 (464)
T ss_pred CcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh-
Confidence 3789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCccccccCcceeeeEEEEcC-CCCEEEEEcCcceEEeCC
Q 023643 241 PVKDKQLKGVISCVSCITLDA-SESWLVRVRATNYVILFS 279 (279)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd 279 (279)
++|+..|+++.|+| ...+|.+|+.||.|..|.
T Consensus 303 -------r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~ 335 (464)
T KOG0284|consen 303 -------RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWV 335 (464)
T ss_pred -------hcchhhheeeccccccccceeeccCCCceEEEe
Confidence 78999999999999 456788999999999874
No 19
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2e-37 Score=245.49 Aligned_cols=224 Identities=20% Similarity=0.375 Sum_probs=186.2
Q ss_pred ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccc-----cccC-----Cc--ccceeeeccccc
Q 023643 17 ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLP-----LGLS-----NS--KVQQLLGIEPDG 84 (279)
Q Consensus 17 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-----~~~~-----~~--~~~~~~~~~~~~ 84 (279)
++.++..-...++|..|++ ++.+||.|..|-.|++|.+...+.... +... .. ...+........
T Consensus 370 c~YT~~nt~~~v~ca~fSd----dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~ 445 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSD----DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR 445 (707)
T ss_pred EEEEEEEcCCcceeEeecC----CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeE
Confidence 3445555567899999999 899999999999999999985321110 0000 00 000011133445
Q ss_pred cccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCcee
Q 023643 85 FLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNA 164 (279)
Q Consensus 85 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 164 (279)
++.+|.++|.+..|+|+.+ +|+++|.|+++|+|.+++. .....+++ |..| |..
T Consensus 446 ~L~GH~GPVyg~sFsPd~r--fLlScSED~svRLWsl~t~---s~~V~y~G-H~~P---------------------Vwd 498 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRR--FLLSCSEDSSVRLWSLDTW---SCLVIYKG-HLAP---------------------VWD 498 (707)
T ss_pred EeecCCCceeeeeeccccc--ceeeccCCcceeeeecccc---eeEEEecC-CCcc---------------------eee
Confidence 6889999999999999998 9999999999999998754 33444443 4444 578
Q ss_pred EEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCcc
Q 023643 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKD 244 (279)
Q Consensus 165 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 244 (279)
+.|+|-|-++++++.|++-++|......+++.|.+|.+.|.|+.|+|+..|+++||.|.++|+||+.+|..++.+
T Consensus 499 V~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF----- 573 (707)
T KOG0263|consen 499 VQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF----- 573 (707)
T ss_pred EEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe-----
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 245 KQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 245 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+|..+|++++|+|+|++|++|+.||.|.+||
T Consensus 574 ---~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWD 605 (707)
T KOG0263|consen 574 ---TGHKGPVTALAFSPCGRYLASGDEDGLIKIWD 605 (707)
T ss_pred ---cCCCCceEEEEEcCCCceEeecccCCcEEEEE
Confidence 79999999999999999999999999999997
No 20
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.8e-36 Score=241.25 Aligned_cols=225 Identities=20% Similarity=0.332 Sum_probs=190.4
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.|+.+++|+........+..+.+|...|..++|+| ++.++++++.|++|+|||+... +
T Consensus 179 ~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~----d~~~l~s~s~D~tiriwd~~~~------------------~ 236 (456)
T KOG0266|consen 179 SDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSP----DGSYLLSGSDDKTLRIWDLKDD------------------G 236 (456)
T ss_pred CCCcEEEeecccccchhhccccccccceeeeEECC----CCcEEEEecCCceEEEeeccCC------------------C
Confidence 47899999986554234666789999999999999 9999999999999999999442 5
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
..++++++|...|++++|+|+++ ++++|+.|++|++||+++ ......+.++..
T Consensus 237 ~~~~~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~---~~~~~~l~~hs~---------------------- 289 (456)
T KOG0266|consen 237 RNLKTLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRT---GECVRKLKGHSD---------------------- 289 (456)
T ss_pred eEEEEecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccC---CeEEEeeeccCC----------------------
Confidence 77899999999999999999997 999999999999999875 345555554432
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCc--EEEEeecCCcc--eEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSR--IKMVFKGHSDY--LHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI 236 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~ 236 (279)
.|++++|++++.+|++++.|+.|++||+.++. ++..+..+... +++++|+|++.++++++.|+.+++||++.++..
T Consensus 290 ~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 290 GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV 369 (456)
T ss_pred ceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcce
Confidence 37999999999999999999999999999998 56777776655 999999999999999999999999999999999
Q ss_pred EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
..+..+.. . ...+.+...++.+.++++|+.|+.|.+||
T Consensus 370 ~~~~~~~~----~-~~~~~~~~~~~~~~~i~sg~~d~~v~~~~ 407 (456)
T KOG0266|consen 370 GTYTGHSN----L-VRCIFSPTLSTGGKLIYSGSEDGSVYVWD 407 (456)
T ss_pred eeecccCC----c-ceeEecccccCCCCeEEEEeCCceEEEEe
Confidence 99854331 1 02344455678899999999999999996
No 21
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.2e-36 Score=237.82 Aligned_cols=217 Identities=19% Similarity=0.319 Sum_probs=187.0
Q ss_pred CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccc
Q 023643 3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEP 82 (279)
Q Consensus 3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (279)
|.+-||+.+.... +-...+|...+++++++| ||+++|+|+.||.|+|||..+ +-+
T Consensus 330 gQLlVweWqsEsY--VlKQQgH~~~i~~l~YSp----Dgq~iaTG~eDgKVKvWn~~S-------------------gfC 384 (893)
T KOG0291|consen 330 GQLLVWEWQSESY--VLKQQGHSDRITSLAYSP----DGQLIATGAEDGKVKVWNTQS-------------------GFC 384 (893)
T ss_pred ceEEEEEeeccce--eeeccccccceeeEEECC----CCcEEEeccCCCcEEEEeccC-------------------ceE
Confidence 5778899887643 566778999999999999 999999999999999999998 788
Q ss_pred cccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCc
Q 023643 83 DGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPEN 162 (279)
Q Consensus 83 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 162 (279)
..+|..|+..|+.+.|+..++ .+++++.||+|+.||+... .....+...... +.
T Consensus 385 ~vTFteHts~Vt~v~f~~~g~--~llssSLDGtVRAwDlkRY---rNfRTft~P~p~---------------------Qf 438 (893)
T KOG0291|consen 385 FVTFTEHTSGVTAVQFTARGN--VLLSSSLDGTVRAWDLKRY---RNFRTFTSPEPI---------------------QF 438 (893)
T ss_pred EEEeccCCCceEEEEEEecCC--EEEEeecCCeEEeeeeccc---ceeeeecCCCce---------------------ee
Confidence 899999999999999999998 9999999999999998643 233333322111 24
Q ss_pred eeEEEcCCCCeEEEecCCC-eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC-ceEEEec
Q 023643 163 NAIAVDPQGGAIFSAAGDS-CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG-KCIKVID 240 (279)
Q Consensus 163 ~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~ 240 (279)
.|++..|.|..+.+|+.|. .|.+|++++|+.+-.+.+|+++|.+++|+|.+..|+++|.|.+|++||+-.. ....++
T Consensus 439 scvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl- 517 (893)
T KOG0291|consen 439 SCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL- 517 (893)
T ss_pred eEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE-
Confidence 7999999999999888875 5999999999999999999999999999999999999999999999998654 234444
Q ss_pred CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+...+..++|+|+|+-|++++-||.|.+||
T Consensus 518 --------~i~sdvl~vsfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 518 --------EIRSDVLAVSFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred --------eeccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence 4455789999999999999999999999997
No 22
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-36 Score=211.65 Aligned_cols=221 Identities=15% Similarity=0.219 Sum_probs=186.2
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
||.+++||... ....+..++.|..+|.++.|++. +...+++++.|++|++|+.+. .+
T Consensus 82 DGSLrl~d~~~-~s~Pi~~~kEH~~EV~Svdwn~~---~r~~~ltsSWD~TiKLW~~~r-------------------~~ 138 (311)
T KOG0277|consen 82 DGSLRLFDLTM-PSKPIHKFKEHKREVYSVDWNTV---RRRIFLTSSWDGTIKLWDPNR-------------------PN 138 (311)
T ss_pred CceEEEeccCC-CCcchhHHHhhhhheEEeccccc---cceeEEeeccCCceEeecCCC-------------------Cc
Confidence 89999999443 33567889999999999999995 788899999999999999998 67
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
.+.++.+|...|....|+|... ++++++|.|+++++||++... +... +..+. .+
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~g--k~~~-i~ah~----------------------~E 192 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIP-NLFASASGDGTLRLWDVRSPG--KFMS-IEAHN----------------------SE 192 (311)
T ss_pred ceEeecCCccEEEEEecCCCCC-CeEEEccCCceEEEEEecCCC--ceeE-EEecc----------------------ce
Confidence 7889999999999999999876 599999999999999987531 1111 22211 13
Q ss_pred ceeEEEcC-CCCeEEEecCCCeEEEEecCCC-cEEEEeecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCc-eEE
Q 023643 162 NNAIAVDP-QGGAIFSAAGDSCAYCWDVESS-RIKMVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGK-CIK 237 (279)
Q Consensus 162 i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~-~~~ 237 (279)
|.|+.|+. +.+.+++|+.|+.|+.||+++- .++.++.+|.-.|+.+.|||. ...|++++.|-+++|||...+. .+.
T Consensus 193 il~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e 272 (311)
T KOG0277|consen 193 ILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIE 272 (311)
T ss_pred eEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhh
Confidence 78999986 5668999999999999999974 678889999999999999995 6789999999999999998554 334
Q ss_pred EecCCccccccCcceeeeEEEEcC-CCCEEEEEcCcceEEeCC
Q 023643 238 VIDPVKDKQLKGVISCVSCITLDA-SESWLVRVRATNYVILFS 279 (279)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd 279 (279)
+. ..|+..|..+.|++ ++.++|+++.|..+.||+
T Consensus 273 ~~--------~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 273 TV--------DHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred hh--------hccceEEeccccccccCceeeecccccceeeec
Confidence 44 57889999999998 577899999999999996
No 23
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.8e-36 Score=217.08 Aligned_cols=217 Identities=14% Similarity=0.245 Sum_probs=194.4
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
||++++|||+.+++ +..++.+|...|..+++++ ...+|++++.|+.|+.||++. .
T Consensus 171 ~DrtikIwDlatg~--LkltltGhi~~vr~vavS~----rHpYlFs~gedk~VKCwDLe~-------------------n 225 (460)
T KOG0285|consen 171 ADRTIKIWDLATGQ--LKLTLTGHIETVRGVAVSK----RHPYLFSAGEDKQVKCWDLEY-------------------N 225 (460)
T ss_pred CCceeEEEEcccCe--EEEeecchhheeeeeeecc----cCceEEEecCCCeeEEEechh-------------------h
Confidence 69999999999984 4668999999999999999 789999999999999999998 6
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
+.++.+.+|-..|.+++.+|.-. .|+||+.|.++++||+++. ..+..+.++..
T Consensus 226 kvIR~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr---~~V~~l~GH~~---------------------- 278 (460)
T KOG0285|consen 226 KVIRHYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTR---ASVHVLSGHTN---------------------- 278 (460)
T ss_pred hhHHHhccccceeEEEeccccce--eEEecCCcceEEEeeeccc---ceEEEecCCCC----------------------
Confidence 78889999999999999999987 9999999999999998753 34444444332
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
.|..+.+.|....+++|+.|++|++||++.++....+..|...+++++.+|....+++++.|. |+-|++..|..+..+
T Consensus 279 ~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nl- 356 (460)
T KOG0285|consen 279 PVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNL- 356 (460)
T ss_pred cceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcc-
Confidence 368889999888999999999999999999999999999999999999999999999999886 899999999998887
Q ss_pred CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+|+..|.+++...|+ ++++|+.+|.+.+||
T Consensus 357 -------sgh~~iintl~~nsD~-v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 357 -------SGHNAIINTLSVNSDG-VLVSGGDNGSIMFWD 387 (460)
T ss_pred -------ccccceeeeeeeccCc-eEEEcCCceEEEEEe
Confidence 7999999999988664 688999999999997
No 24
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.3e-35 Score=215.91 Aligned_cols=205 Identities=20% Similarity=0.321 Sum_probs=184.6
Q ss_pred cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEE
Q 023643 16 SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYD 95 (279)
Q Consensus 16 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 95 (279)
+..+.+.+|.+-|.++++.| ...+|++|+.|++|+|||+.+ ++...++.+|...|..
T Consensus 142 Kl~rVi~gHlgWVr~vavdP----~n~wf~tgs~DrtikIwDlat-------------------g~LkltltGhi~~vr~ 198 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDP----GNEWFATGSADRTIKIWDLAT-------------------GQLKLTLTGHIETVRG 198 (460)
T ss_pred eehhhhhhccceEEEEeeCC----CceeEEecCCCceeEEEEccc-------------------CeEEEeecchhheeee
Confidence 34556789999999999999 889999999999999999999 6778889999999999
Q ss_pred EEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEE
Q 023643 96 VKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF 175 (279)
Q Consensus 96 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 175 (279)
+++++-.. |+++++.|+.|+.||++.. +.+..+.++-. .|.|++.+|.-..|+
T Consensus 199 vavS~rHp--YlFs~gedk~VKCwDLe~n---kvIR~YhGHlS----------------------~V~~L~lhPTldvl~ 251 (460)
T KOG0285|consen 199 VAVSKRHP--YLFSAGEDKQVKCWDLEYN---KVIRHYHGHLS----------------------GVYCLDLHPTLDVLV 251 (460)
T ss_pred eeecccCc--eEEEecCCCeeEEEechhh---hhHHHhccccc----------------------eeEEEeccccceeEE
Confidence 99999998 9999999999999998643 55556665432 378999999999999
Q ss_pred EecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeee
Q 023643 176 SAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVS 255 (279)
Q Consensus 176 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 255 (279)
+|+.|.++++||+++...+..+.+|..+|..+.+.|-...+++||.|++|++||++.|+...++ ..|...|.
T Consensus 252 t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tl--------t~hkksvr 323 (460)
T KOG0285|consen 252 TGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITL--------THHKKSVR 323 (460)
T ss_pred ecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEee--------ecccceee
Confidence 9999999999999999999999999999999999998889999999999999999999999998 78889999
Q ss_pred EEEEcCCCCEEEEEcCcceEEeCC
Q 023643 256 CITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 256 ~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+++.+|....+|+++.|. |+-|+
T Consensus 324 al~lhP~e~~fASas~dn-ik~w~ 346 (460)
T KOG0285|consen 324 ALCLHPKENLFASASPDN-IKQWK 346 (460)
T ss_pred EEecCCchhhhhccCCcc-ceecc
Confidence 999999999999998875 55553
No 25
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.9e-34 Score=201.47 Aligned_cols=212 Identities=17% Similarity=0.300 Sum_probs=177.4
Q ss_pred cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccc-cCCccCeE
Q 023643 16 SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFL-HGHDGPAY 94 (279)
Q Consensus 16 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~ 94 (279)
..++.+++|.+.++.++|+|. .|..||+++.|..|++|+...... ..+...+ .+|+..|.
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~---~g~ilAscg~Dk~vriw~~~~~~s----------------~~ck~vld~~hkrsVR 65 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPG---KGVILASCGTDKAVRIWSTSSGDS----------------WTCKTVLDDGHKRSVR 65 (312)
T ss_pred eeEEeecCCCCcEEEEEeccC---CceEEEeecCCceEEEEecCCCCc----------------EEEEEeccccchheee
Confidence 345678899999999999992 378999999999999999984211 2233333 36999999
Q ss_pred EEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeE
Q 023643 95 DVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAI 174 (279)
Q Consensus 95 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 174 (279)
+++|+|.++ +|+++|.|.++.||.-.. ..-++...+.++.. .|.|++|+++|++|
T Consensus 66 svAwsp~g~--~La~aSFD~t~~Iw~k~~-~efecv~~lEGHEn----------------------EVK~Vaws~sG~~L 120 (312)
T KOG0645|consen 66 SVAWSPHGR--YLASASFDATVVIWKKED-GEFECVATLEGHEN----------------------EVKCVAWSASGNYL 120 (312)
T ss_pred eeeecCCCc--EEEEeeccceEEEeecCC-CceeEEeeeecccc----------------------ceeEEEEcCCCCEE
Confidence 999999998 999999999999998442 23344444444432 48999999999999
Q ss_pred EEecCCCeEEEEecCCC---cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC---CceEEEecCCcccccc
Q 023643 175 FSAAGDSCAYCWDVESS---RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS---GKCIKVIDPVKDKQLK 248 (279)
Q Consensus 175 ~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~---~~~~~~~~~~~~~~~~ 248 (279)
|+++.|..|-||.+... ++...++.|..-|..+.|+|...+|+++|.|++|++|+-.. -.+.+++ .
T Consensus 121 ATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl--------~ 192 (312)
T KOG0645|consen 121 ATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTL--------D 192 (312)
T ss_pred EEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEe--------c
Confidence 99999999999998743 67788999999999999999999999999999999998762 3567777 7
Q ss_pred CcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 249 GVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 249 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+|...|.+++|++.|..|++++.|++++||.
T Consensus 193 g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 193 GHENTVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred CccceEEEEEecCCCceEEEecCCcceEeee
Confidence 8888999999999999999999999999993
No 26
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3e-34 Score=218.19 Aligned_cols=264 Identities=15% Similarity=0.236 Sum_probs=196.8
Q ss_pred CCCceeeeccccccccceeeee---ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccccee
Q 023643 1 MCGDSTNWDEDAYRKSILKERE---ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQL 77 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 77 (279)
.||.|.+||-++++. +..+. +|.+.|++++|+| |+..+++++.|.+++|||+.+.+...++.......++.
T Consensus 210 sDgki~iyDGktge~--vg~l~~~~aHkGsIfalsWsP----Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqq 283 (603)
T KOG0318|consen 210 SDGKIYIYDGKTGEK--VGELEDSDAHKGSIFALSWSP----DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQ 283 (603)
T ss_pred CCccEEEEcCCCccE--EEEecCCCCccccEEEEEECC----CCceEEEecCCceEEEEEeeccceEEEeecCCchhceE
Confidence 489999999777643 44444 8999999999999 99999999999999999999876665444333311111
Q ss_pred ee------------------------ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcce---
Q 023643 78 LG------------------------IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVP--- 130 (279)
Q Consensus 78 ~~------------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~--- 130 (279)
+. ..+...+.+|...|+++..+|+++ +|++|+.||.|.-|+..........
T Consensus 284 vG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~--~i~SgsyDG~I~~W~~~~g~~~~~~g~~ 361 (603)
T KOG0318|consen 284 VGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK--TIYSGSYDGHINSWDSGSGTSDRLAGKG 361 (603)
T ss_pred EEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC--EEEeeccCceEEEEecCCcccccccccc
Confidence 11 557788899999999999999998 9999999999999998654332111
Q ss_pred -----eeeccCcccceEEe-----------ecCCCC---------Cccc----------------------------cCC
Q 023643 131 -----INLQGNHVKPVLDL-----------VNHQHK---------GPWG----------------------------ALS 157 (279)
Q Consensus 131 -----~~~~~~~~~~~~~~-----------~~~~~~---------~~~~----------------------------~~~ 157 (279)
..+.......+... ...... .|.. ...
T Consensus 362 h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~ 441 (603)
T KOG0318|consen 362 HTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIP 441 (603)
T ss_pred ccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeec
Confidence 11111110111111 000000 0000 011
Q ss_pred CCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEE--EEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce
Q 023643 158 PVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIK--MVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC 235 (279)
Q Consensus 158 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~ 235 (279)
......+++++|++..+++|+.|+.|++|.+...... ..+..|.++|++++|+|++.+|+++...+.+.+||+.+.+.
T Consensus 442 ~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 442 IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV 521 (603)
T ss_pred cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce
Confidence 1234578999999999999999999999999865533 34567999999999999999999999999999999998776
Q ss_pred EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 236 IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.... ..-|...|.+++|+|+..++|||+-|..|.+|+
T Consensus 522 ~~~~-------w~FHtakI~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 522 KTNR-------WAFHTAKINCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred ecce-------eeeeeeeEEEEEeCCCceEEEeccccceEEEEE
Confidence 3222 145999999999999999999999999999995
No 27
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-35 Score=232.43 Aligned_cols=229 Identities=13% Similarity=0.201 Sum_probs=195.9
Q ss_pred CCceeeeccccc--cccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643 2 CGDSTNWDEDAY--RKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG 79 (279)
Q Consensus 2 dG~v~iw~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 79 (279)
|.++++|.+++. ...++....+|.+.|.+++++.. ...+|++++.|++|++|++...+.... .+.
T Consensus 386 D~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~---~asffvsvS~D~tlK~W~l~~s~~~~~---------~~~- 452 (775)
T KOG0319|consen 386 DKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKL---GASFFVSVSQDCTLKLWDLPKSKETAF---------PIV- 452 (775)
T ss_pred CceEEEEEecCCcchhhhhhhhcccccccceeeeccc---CccEEEEecCCceEEEecCCCcccccc---------cce-
Confidence 678999977433 33556778899999999999873 678999999999999999986221111 000
Q ss_pred ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643 80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV 159 (279)
Q Consensus 80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (279)
.....+...|...|++++.+|+.+ +++|||.|.+.+||+++ .......+.+|..
T Consensus 453 ~~~~~t~~aHdKdIN~Vaia~ndk--LiAT~SqDktaKiW~le---~~~l~~vLsGH~R--------------------- 506 (775)
T KOG0319|consen 453 LTCRYTERAHDKDINCVAIAPNDK--LIATGSQDKTAKIWDLE---QLRLLGVLSGHTR--------------------- 506 (775)
T ss_pred ehhhHHHHhhcccccceEecCCCc--eEEecccccceeeeccc---CceEEEEeeCCcc---------------------
Confidence 233345567999999999999998 99999999999999986 3344445555433
Q ss_pred CCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEe
Q 023643 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239 (279)
Q Consensus 160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 239 (279)
.|.|+.|+|..+.+++++.|++|+||.+.+..++.+|.+|...|..+.|-.++..|++++.||.|++|++.++.++.++
T Consensus 507 -Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl 585 (775)
T KOG0319|consen 507 -GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL 585 (775)
T ss_pred -ceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh
Confidence 3789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 240 DPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 240 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
..|+..|++++-+|....++||+.||.|.+|
T Consensus 586 --------D~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 586 --------DAHNDRVWALSVSPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred --------hhccceeEEEeecCccceeEecCCCeEEEEe
Confidence 7899999999999999999999999999998
No 28
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.6e-34 Score=201.69 Aligned_cols=218 Identities=18% Similarity=0.239 Sum_probs=183.5
Q ss_pred CCceeeeccccc-cccceeee-eecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643 2 CGDSTNWDEDAY-RKSILKER-EILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG 79 (279)
Q Consensus 2 dG~v~iw~~~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 79 (279)
|..||+|+...+ ...+...+ .+|+..|.+++|+| .|++||+|+.|.++.||.-...+
T Consensus 36 Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp----~g~~La~aSFD~t~~Iw~k~~~e----------------- 94 (312)
T KOG0645|consen 36 DKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP----HGRYLASASFDATVVIWKKEDGE----------------- 94 (312)
T ss_pred CceEEEEecCCCCcEEEEEeccccchheeeeeeecC----CCcEEEEeeccceEEEeecCCCc-----------------
Confidence 678999998742 22333222 47999999999999 89999999999999999987644
Q ss_pred ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643 80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV 159 (279)
Q Consensus 80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (279)
.+++.++.||+..|.+++|+++|. +||++++|.+|-||.+....+..+...++.|..
T Consensus 95 fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~Htq--------------------- 151 (312)
T KOG0645|consen 95 FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ--------------------- 151 (312)
T ss_pred eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeeccccc---------------------
Confidence 677889999999999999999998 999999999999999986555555555555332
Q ss_pred CCceeEEEcCCCCeEEEecCCCeEEEEecC---CCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE
Q 023643 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVE---SSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI 236 (279)
Q Consensus 160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~ 236 (279)
.|..+.|+|...+|++++.|.+|++|+-. ..+++.++.+|.+.|.+++|++.|..|++++.|++++||...+
T Consensus 152 -DVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~---- 226 (312)
T KOG0645|consen 152 -DVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT---- 226 (312)
T ss_pred -cccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc----
Confidence 26789999999999999999999999876 3578999999999999999999999999999999999998762
Q ss_pred EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
.+. ..|...+..++|. ...|++++.|+.|++|
T Consensus 227 -~~~-------~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf 258 (312)
T KOG0645|consen 227 -DLS-------GMHSRALYDVPWD--NGVIASGGGDDAIRLF 258 (312)
T ss_pred -Ccc-------hhcccceEeeeec--ccceEeccCCCEEEEE
Confidence 221 3566788899998 5679999999999987
No 29
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=4.4e-35 Score=214.39 Aligned_cols=235 Identities=21% Similarity=0.243 Sum_probs=189.0
Q ss_pred CCCceeeecccccc--ccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCc------
Q 023643 1 MCGDSTNWDEDAYR--KSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNS------ 72 (279)
Q Consensus 1 ~dG~v~iw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------ 72 (279)
+|.++++|..+... ...++.-.+|...|-+++..+ ++.++++|+.|..|.||+.... ....++-...
T Consensus 167 ~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~----sgtr~~SgS~D~~lkiWs~~~~-~~~~~E~~s~~rrk~~ 241 (423)
T KOG0313|consen 167 MDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS----SGTRFCSGSWDTMLKIWSVETD-EEDELESSSNRRRKKQ 241 (423)
T ss_pred CCceEEEEEecCchhhhhHHhHhcccccceeEEEecC----CCCeEEeecccceeeecccCCC-ccccccccchhhhhhh
Confidence 58899999866554 233444559999999999999 9999999999999999994332 2222221111
Q ss_pred -ccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCC
Q 023643 73 -KVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKG 151 (279)
Q Consensus 73 -~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (279)
...+.....|+.++.+|.++|.++.|++.+ .+.+++.|.+|+.||+.+.. ......+..
T Consensus 242 ~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~---v~yS~SwDHTIk~WDletg~---~~~~~~~~k-------------- 301 (423)
T KOG0313|consen 242 KREKEGGTRTPLVTLEGHTEPVSSVVWSDAT---VIYSVSWDHTIKVWDLETGG---LKSTLTTNK-------------- 301 (423)
T ss_pred hhhhcccccCceEEecccccceeeEEEcCCC---ceEeecccceEEEEEeeccc---ceeeeecCc--------------
Confidence 112222367888999999999999999954 89999999999999987642 222222211
Q ss_pred ccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCc---EEEEeecCCcceEEEEEcCC-CcEEEEecCCCeEEE
Q 023643 152 PWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSR---IKMVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARI 227 (279)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~v 227 (279)
.++|++.+|..++|++|+.|..|++||.+++. ..++|.+|.+.|.++.|+|. ..+|++|+.|+++++
T Consensus 302 ---------sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~kl 372 (423)
T KOG0313|consen 302 ---------SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKL 372 (423)
T ss_pred ---------ceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEE
Confidence 26899999999999999999999999999763 55688999999999999995 677999999999999
Q ss_pred EeCCCCc-eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 228 WDCKSGK-CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 228 wd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
||+|+.+ ++..+ .+|...|.++.|. ++.+|++|+.|++++++
T Consensus 373 WDvRS~k~plydI--------~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 373 WDVRSTKAPLYDI--------AGHNDKVLSVDWN-EGGLIVSGGADNKLRIF 415 (423)
T ss_pred EEeccCCCcceee--------ccCCceEEEEecc-CCceEEeccCcceEEEe
Confidence 9999988 88998 7899999999998 46789999999999987
No 30
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=6.2e-34 Score=229.62 Aligned_cols=229 Identities=12% Similarity=0.111 Sum_probs=172.5
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
+|.|++|+.... ..+..+.+|.+.|.+++|+|. ++.+||+|+.||+|+|||+.+...... .. ..
T Consensus 53 ~gvI~L~~~~r~--~~v~~L~gH~~~V~~lafsP~---~~~lLASgS~DgtIrIWDi~t~~~~~~----------~i-~~ 116 (568)
T PTZ00420 53 IGAIRLENQMRK--PPVIKLKGHTSSILDLQFNPC---FSEILASGSEDLTIRVWEIPHNDESVK----------EI-KD 116 (568)
T ss_pred eeEEEeeecCCC--ceEEEEcCCCCCEEEEEEcCC---CCCEEEEEeCCCeEEEEECCCCCcccc----------cc-cc
Confidence 577888886554 346678899999999999993 478999999999999999976321000 00 13
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
++..+.+|...|.+++|+|++. .+|++++.|++|++||+++.. ....+.. . ..
T Consensus 117 p~~~L~gH~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~---~~~~i~~-~----------------------~~ 169 (568)
T PTZ00420 117 PQCILKGHKKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEK---RAFQINM-P----------------------KK 169 (568)
T ss_pred ceEEeecCCCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCc---EEEEEec-C----------------------Cc
Confidence 4456788999999999999886 356899999999999987542 1111111 0 12
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEE-----EEEcCCCcEEEEecCCC----eEEEEeCCC
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHC-----IVARNSTNQIVTGSEDG----TARIWDCKS 232 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~-----i~~~~~~~~l~~~~~d~----~i~vwd~~~ 232 (279)
|.+++|+|+|.+|++++.|+.|++||+++++.+.++.+|.+.+.+ ..|++++.+|++++.|+ +|+|||++.
T Consensus 170 V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 170 LSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred EEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 789999999999999999999999999999999999999876533 23558888999887764 799999995
Q ss_pred -CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 233 -GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 233 -~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
++++..+.. ..+...+......+++.++++|+.|+.|++|+
T Consensus 250 ~~~pl~~~~l------d~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e 291 (568)
T PTZ00420 250 TTSALVTMSI------DNASAPLIPHYDESTGLIYLIGKGDGNCRYYQ 291 (568)
T ss_pred CCCceEEEEe------cCCccceEEeeeCCCCCEEEEEECCCeEEEEE
Confidence 556655421 23333343344455689999999999999995
No 31
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.6e-34 Score=231.20 Aligned_cols=203 Identities=26% Similarity=0.414 Sum_probs=175.0
Q ss_pred cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643 24 LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE 103 (279)
Q Consensus 24 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 103 (279)
+...|.++.|+| ++..+++++.|+.+++|+...... .....+.+|...|.+++|+|++.
T Consensus 158 ~~~sv~~~~fs~----~g~~l~~~~~~~~i~~~~~~~~~~-----------------~~~~~l~~h~~~v~~~~fs~d~~ 216 (456)
T KOG0266|consen 158 ECPSVTCVDFSP----DGRALAAASSDGLIRIWKLEGIKS-----------------NLLRELSGHTRGVSDVAFSPDGS 216 (456)
T ss_pred ccCceEEEEEcC----CCCeEEEccCCCcEEEeecccccc-----------------hhhccccccccceeeeEECCCCc
Confidence 378899999999 999999999999999999966210 14566688999999999999998
Q ss_pred ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeE
Q 023643 104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCA 183 (279)
Q Consensus 104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 183 (279)
++++++.|++|++||+. ........+.+|.. .|++++|+|+++++++|+.|++|
T Consensus 217 --~l~s~s~D~tiriwd~~--~~~~~~~~l~gH~~----------------------~v~~~~f~p~g~~i~Sgs~D~tv 270 (456)
T KOG0266|consen 217 --YLLSGSDDKTLRIWDLK--DDGRNLKTLKGHST----------------------YVTSVAFSPDGNLLVSGSDDGTV 270 (456)
T ss_pred --EEEEecCCceEEEeecc--CCCeEEEEecCCCC----------------------ceEEEEecCCCCEEEEecCCCcE
Confidence 99999999999999983 23344455554332 37999999999999999999999
Q ss_pred EEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCc--eEEEecCCccccccCcceeeeEEEEcC
Q 023643 184 YCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGK--CIKVIDPVKDKQLKGVISCVSCITLDA 261 (279)
Q Consensus 184 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~ 261 (279)
++||+++++++..+.+|.+.|++++|++++++|++++.|+.|+|||+.+++ +...+... .... +++.+.|+|
T Consensus 271 riWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-----~~~~-~~~~~~fsp 344 (456)
T KOG0266|consen 271 RIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGA-----ENSA-PVTSVQFSP 344 (456)
T ss_pred EEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCC-----CCCC-ceeEEEECC
Confidence 999999999999999999999999999999999999999999999999998 45666322 1222 699999999
Q ss_pred CCCEEEEEcCcceEEeCC
Q 023643 262 SESWLVRVRATNYVILFS 279 (279)
Q Consensus 262 ~~~~l~~~~~d~~i~~wd 279 (279)
++.+|++++.|+.+++||
T Consensus 345 ~~~~ll~~~~d~~~~~w~ 362 (456)
T KOG0266|consen 345 NGKYLLSASLDRTLKLWD 362 (456)
T ss_pred CCcEEEEecCCCeEEEEE
Confidence 999999999999999996
No 32
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-34 Score=228.55 Aligned_cols=231 Identities=20% Similarity=0.244 Sum_probs=193.4
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
.+.+|+|+..+... +.+.+|.+.|.++.... +|.+|++|+.|.++++|.++..... ..
T Consensus 345 s~~lr~y~~~~~~c---~ii~GH~e~vlSL~~~~----~g~llat~sKD~svilWr~~~~~~~---------------~~ 402 (775)
T KOG0319|consen 345 SPELRLYTLPTSYC---QIIPGHTEAVLSLDVWS----SGDLLATGSKDKSVILWRLNNNCSK---------------SL 402 (775)
T ss_pred CCceEEEecCCCce---EEEeCchhheeeeeecc----cCcEEEEecCCceEEEEEecCCcch---------------hh
Confidence 46788998777543 26889999999999555 5789999999999999988542211 34
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
++....+|++.|.+++++..+. .+|+++|.|+++++|++...........+. ..+....|.+.
T Consensus 403 ~~a~~~gH~~svgava~~~~~a-sffvsvS~D~tlK~W~l~~s~~~~~~~~~~----------------~~~t~~aHdKd 465 (775)
T KOG0319|consen 403 CVAQANGHTNSVGAVAGSKLGA-SFFVSVSQDCTLKLWDLPKSKETAFPIVLT----------------CRYTERAHDKD 465 (775)
T ss_pred hhhhhcccccccceeeecccCc-cEEEEecCCceEEEecCCCcccccccceeh----------------hhHHHHhhccc
Confidence 4566678999999999987665 699999999999999986522211111111 11122345567
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
|+|++++|+.++++||+.|.+.++|++.+.+...++.+|...|.|+.|+|..+.++++|.|++|+||.+.+..+++++
T Consensus 466 IN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~-- 543 (775)
T KOG0319|consen 466 INCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF-- 543 (775)
T ss_pred ccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeee--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 242 VKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+|+..|..+.|-.++..|+++++||.+++|+
T Consensus 544 ------eGH~~aVlra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 544 ------EGHTSAVLRASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred ------cCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence 79999999999999999999999999999996
No 33
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.7e-34 Score=205.33 Aligned_cols=224 Identities=14% Similarity=0.186 Sum_probs=188.1
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
+|..|.+|++-+.. +-...+++|.+.|..+.|.+ |++.+++++.|.+++.||+++ +
T Consensus 67 ~Dr~I~LWnv~gdc-eN~~~lkgHsgAVM~l~~~~----d~s~i~S~gtDk~v~~wD~~t-------------------G 122 (338)
T KOG0265|consen 67 SDRAIVLWNVYGDC-ENFWVLKGHSGAVMELHGMR----DGSHILSCGTDKTVRGWDAET-------------------G 122 (338)
T ss_pred CcceEEEEeccccc-cceeeeccccceeEeeeecc----CCCEEEEecCCceEEEEeccc-------------------c
Confidence 47889999965543 33456779999999999999 999999999999999999999 7
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
+.++.+++|...|+++.-+.-+. .++.|++.|+++++||++.....+ .+.. ..
T Consensus 123 ~~~rk~k~h~~~vNs~~p~rrg~-~lv~SgsdD~t~kl~D~R~k~~~~---t~~~-----------------------ky 175 (338)
T KOG0265|consen 123 KRIRKHKGHTSFVNSLDPSRRGP-QLVCSGSDDGTLKLWDIRKKEAIK---TFEN-----------------------KY 175 (338)
T ss_pred eeeehhccccceeeecCccccCC-eEEEecCCCceEEEEeecccchhh---cccc-----------------------ce
Confidence 88899999999999998554454 578899999999999987532211 1111 01
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC----CceE
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS----GKCI 236 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~----~~~~ 236 (279)
+++++.|..++..+.+|+-|+.|++||++.+...+.+.+|..+|+.|..+|+|.++++-+.|.++++||++- ..++
T Consensus 176 qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v 255 (338)
T KOG0265|consen 176 QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCV 255 (338)
T ss_pred eEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceE
Confidence 368999999999999999999999999999999999999999999999999999999999999999999974 3456
Q ss_pred EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
..+..+. .........++|+|++..+.+|+.|..+++||
T Consensus 256 ~if~g~~----hnfeknlL~cswsp~~~~i~ags~dr~vyvwd 294 (338)
T KOG0265|consen 256 KIFQGHI----HNFEKNLLKCSWSPNGTKITAGSADRFVYVWD 294 (338)
T ss_pred EEeecch----hhhhhhcceeeccCCCCccccccccceEEEee
Confidence 6665432 23344567789999999999999999999997
No 34
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.8e-36 Score=225.61 Aligned_cols=215 Identities=17% Similarity=0.236 Sum_probs=182.6
Q ss_pred cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEE
Q 023643 16 SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYD 95 (279)
Q Consensus 16 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 95 (279)
..+..+.+|+..|+++.|.|. .+.+|++++.|+.|+||++... +++++++.+|..+|..
T Consensus 205 k~~~~~~gH~kgvsai~~fp~---~~hLlLS~gmD~~vklW~vy~~------------------~~~lrtf~gH~k~Vrd 263 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPK---KGHLLLSGGMDGLVKLWNVYDD------------------RRCLRTFKGHRKPVRD 263 (503)
T ss_pred hheeeccCCccccchhhhccc---eeeEEEecCCCceEEEEEEecC------------------cceehhhhcchhhhhh
Confidence 446688999999999999995 8999999999999999999874 7889999999999999
Q ss_pred EEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC-CeE
Q 023643 96 VKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG-GAI 174 (279)
Q Consensus 96 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l 174 (279)
++|++++. .|+|+|.|+.|++||++++ ++...+.... .++|+.|+|++ +.+
T Consensus 264 ~~~s~~g~--~fLS~sfD~~lKlwDtETG---~~~~~f~~~~-----------------------~~~cvkf~pd~~n~f 315 (503)
T KOG0282|consen 264 ASFNNCGT--SFLSASFDRFLKLWDTETG---QVLSRFHLDK-----------------------VPTCVKFHPDNQNIF 315 (503)
T ss_pred hhccccCC--eeeeeecceeeeeeccccc---eEEEEEecCC-----------------------CceeeecCCCCCcEE
Confidence 99999998 9999999999999998765 3333333322 26899999998 788
Q ss_pred EEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCC------------
Q 023643 175 FSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPV------------ 242 (279)
Q Consensus 175 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~------------ 242 (279)
++|+.|+.|+.||+++++.++++..|-+.|..+.|-++++++++.+.|++++||+.+.+-.+..+...
T Consensus 316 l~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P 395 (503)
T KOG0282|consen 316 LVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHP 395 (503)
T ss_pred EEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCC
Confidence 99999999999999999999999999999999999999999999999999999998765433322111
Q ss_pred --------------------------ccccccCcce--eeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 243 --------------------------KDKQLKGVIS--CVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 243 --------------------------~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
....+.+|.. .-..+.|||||.+|++|+.||.+.+||
T Consensus 396 ~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 396 NGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred CCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEee
Confidence 0124556653 346678999999999999999999997
No 35
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-34 Score=199.87 Aligned_cols=216 Identities=15% Similarity=0.183 Sum_probs=182.6
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
|.+||+||+..+ .+++++.+|..+|..++.+. |...+++++.|..+.+||+++ ++
T Consensus 38 drtvrLWNp~rg--~liktYsghG~EVlD~~~s~----Dnskf~s~GgDk~v~vwDV~T-------------------Gk 92 (307)
T KOG0316|consen 38 DRTVRLWNPLRG--ALIKTYSGHGHEVLDAALSS----DNSKFASCGGDKAVQVWDVNT-------------------GK 92 (307)
T ss_pred CceEEeeccccc--ceeeeecCCCceeeeccccc----cccccccCCCCceEEEEEccc-------------------Ce
Confidence 779999998777 56999999999999999999 899999999999999999999 78
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
..+.+++|.+.|+.++|+.+.. .+++|+.|.++++||-+.. ..+.+..+.... ..
T Consensus 93 v~Rr~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~-s~ePiQildea~----------------------D~ 147 (307)
T KOG0316|consen 93 VDRRFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSR-SFEPIQILDEAK----------------------DG 147 (307)
T ss_pred eeeecccccceeeEEEecCcce--EEEeccccceeEEEEcccC-CCCccchhhhhc----------------------Cc
Confidence 8899999999999999999887 9999999999999997642 222222221110 13
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
|.++..+ +..+++|+.||+++.||++.|+....+.+ .+|+|+.|+++++..++++.|+++++.|-.+|+.+..+.
T Consensus 148 V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk- 222 (307)
T KOG0316|consen 148 VSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK- 222 (307)
T ss_pred eeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc-
Confidence 6777775 45799999999999999999988776654 579999999999999999999999999999999999984
Q ss_pred CccccccCcce--eeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 242 VKDKQLKGVIS--CVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 242 ~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+|.. .-...++.....++++|++||.|.+||
T Consensus 223 -------Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wd 255 (307)
T KOG0316|consen 223 -------GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWD 255 (307)
T ss_pred -------ccccceeeeeeeecccceeEEeccCCceEEEEE
Confidence 4442 334566777788999999999999997
No 36
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-34 Score=210.97 Aligned_cols=207 Identities=21% Similarity=0.417 Sum_probs=171.8
Q ss_pred cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEE
Q 023643 16 SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYD 95 (279)
Q Consensus 16 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 95 (279)
.....+.+|..+|+.+-|+| +-.++++++.|++|++||..+ ++....+++|.+.|..
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp----~~~~v~~as~d~tikv~D~~t-------------------g~~e~~LrGHt~sv~d 155 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHP----SEALVVSASEDATIKVFDTET-------------------GELERSLRGHTDSVFD 155 (406)
T ss_pred Cchhhhhccccceeeeeecc----CceEEEEecCCceEEEEEccc-------------------hhhhhhhhccccceeE
Confidence 34456678999999999999 888999999999999999999 7778999999999999
Q ss_pred EEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEE
Q 023643 96 VKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF 175 (279)
Q Consensus 96 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 175 (279)
++|+..|+ +|++++.|-.+++||..+. ..+.....++.. .|.++.|-|.|.+++
T Consensus 156 i~~~a~Gk--~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h----------------------~vS~V~f~P~gd~il 209 (406)
T KOG0295|consen 156 ISFDASGK--YLATCSSDLSAKLWDFDTF--FRCIKSLIGHEH----------------------GVSSVFFLPLGDHIL 209 (406)
T ss_pred EEEecCcc--EEEecCCccchhheeHHHH--HHHHHHhcCccc----------------------ceeeEEEEecCCeee
Confidence 99999998 9999999999999998642 233333333322 278999999999999
Q ss_pred EecCCCeEEEEecCCCcEEEEeecC------------------------------------------CcceEEEEEcCC-
Q 023643 176 SAAGDSCAYCWDVESSRIKMVFKGH------------------------------------------SDYLHCIVARNS- 212 (279)
Q Consensus 176 ~~~~d~~i~i~d~~~~~~~~~~~~~------------------------------------------~~~i~~i~~~~~- 212 (279)
+++.|.+|+.|++.++.++.+|.+| +.+|-|++|.|.
T Consensus 210 S~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~ 289 (406)
T KOG0295|consen 210 SCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPES 289 (406)
T ss_pred ecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccc
Confidence 9999999999999988877776444 445555665431
Q ss_pred --------------CcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 213 --------------TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 213 --------------~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
+.++.+++.|++|++||+.++.++.++ .+|.++|..++|+|.|+||+++..|+++++|
T Consensus 290 ~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL--------~ghdnwVr~~af~p~Gkyi~ScaDDktlrvw 361 (406)
T KOG0295|consen 290 SYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL--------VGHDNWVRGVAFSPGGKYILSCADDKTLRVW 361 (406)
T ss_pred cCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE--------ecccceeeeeEEcCCCeEEEEEecCCcEEEE
Confidence 137777778888888888888888877 8999999999999999999999999999999
Q ss_pred C
Q 023643 279 S 279 (279)
Q Consensus 279 d 279 (279)
|
T Consensus 362 d 362 (406)
T KOG0295|consen 362 D 362 (406)
T ss_pred E
Confidence 7
No 37
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-33 Score=196.55 Aligned_cols=222 Identities=19% Similarity=0.265 Sum_probs=178.3
Q ss_pred CCceeeeccccc-cccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 2 CGDSTNWDEDAY-RKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 2 dG~v~iw~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.|.+.|-+++.. .......+. -.+.+..++|++. ..+.+++++.||++++||.... .
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~---~e~~~~~a~GDGSLrl~d~~~~------------------s 94 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSEN---HENQVIAASGDGSLRLFDLTMP------------------S 94 (311)
T ss_pred CceEEEEecCCCCCeEEEEeee-cccceeEeeecCC---CcceEEEEecCceEEEeccCCC------------------C
Confidence 466666666422 222222332 3578999999995 7788999999999999996543 5
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
.|++.++.|..+|.++.|++... ..++++|.|++|++|+.. ..+.+.++.++..
T Consensus 95 ~Pi~~~kEH~~EV~Svdwn~~~r-~~~ltsSWD~TiKLW~~~---r~~Sv~Tf~gh~~---------------------- 148 (311)
T KOG0277|consen 95 KPIHKFKEHKREVYSVDWNTVRR-RIFLTSSWDGTIKLWDPN---RPNSVQTFNGHNS---------------------- 148 (311)
T ss_pred cchhHHHhhhhheEEeccccccc-eeEEeeccCCceEeecCC---CCcceEeecCCcc----------------------
Confidence 78999999999999999999766 477888999999999964 3344445555332
Q ss_pred CceeEEEcC-CCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcC-CCcEEEEecCCCeEEEEeCCCC-ceEE
Q 023643 161 ENNAIAVDP-QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARN-STNQIVTGSEDGTARIWDCKSG-KCIK 237 (279)
Q Consensus 161 ~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~-~~~~ 237 (279)
.|....|+| ..+++++++.|+.+++||++..-....+..|...+.|+.|+. +.+.+++|+.|+.|++||++.. .++.
T Consensus 149 ~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~ 228 (311)
T KOG0277|consen 149 CIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLF 228 (311)
T ss_pred EEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccce
Confidence 278889999 456899999999999999987554455889999999999998 6788999999999999999975 4555
Q ss_pred EecCCccccccCcceeeeEEEEcCC-CCEEEEEcCcceEEeCC
Q 023643 238 VIDPVKDKQLKGVISCVSCITLDAS-ESWLVRVRATNYVILFS 279 (279)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd 279 (279)
.+ .+|.-.|..++|||. ...||+++.|-++++||
T Consensus 229 eL--------~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~ 263 (311)
T KOG0277|consen 229 EL--------NGHGLAVRKVKFSPHHASLLASASYDMTVRIWD 263 (311)
T ss_pred ee--------cCCceEEEEEecCcchhhHhhhccccceEEecc
Confidence 66 799999999999996 56899999999999997
No 38
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-34 Score=230.11 Aligned_cols=220 Identities=20% Similarity=0.288 Sum_probs=191.6
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
.|.|++||.+-. .++..+..|.++|..++|+| .+.++++|+.|-+|+||+..+ .+
T Consensus 30 sG~IQlWDYRM~--tli~rFdeHdGpVRgv~FH~----~qplFVSGGDDykIkVWnYk~-------------------rr 84 (1202)
T KOG0292|consen 30 SGVIQLWDYRMG--TLIDRFDEHDGPVRGVDFHP----TQPLFVSGGDDYKIKVWNYKT-------------------RR 84 (1202)
T ss_pred Cceeeeehhhhh--hHHhhhhccCCccceeeecC----CCCeEEecCCccEEEEEeccc-------------------ce
Confidence 589999997766 45888999999999999999 899999999999999999998 78
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
++.++.+|-+.|..+.|++.-+ .++|+|.|.+|+||+.. +..++..+.||.. .
T Consensus 85 clftL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwq---sr~~iavltGHnH----------------------Y 137 (1202)
T KOG0292|consen 85 CLFTLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQ---SRKCIAVLTGHNH----------------------Y 137 (1202)
T ss_pred ehhhhccccceeEEeeccCCCc--eEEEccCCCeEEEEecc---CCceEEEEecCce----------------------E
Confidence 8899999999999999999998 99999999999999964 4566666666532 2
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCC-----------------------------cEEEEeecCCcceEEEEEcCC
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESS-----------------------------RIKMVFKGHSDYLHCIVARNS 212 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----------------------------~~~~~~~~~~~~i~~i~~~~~ 212 (279)
|.|..|+|....+++++-|.+|++||+..- -..+.+++|.-.|.-++|+|.
T Consensus 138 VMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT 217 (1202)
T KOG0292|consen 138 VMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT 217 (1202)
T ss_pred EEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC
Confidence 789999999999999999999999998521 123456789999999999999
Q ss_pred CcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 213 TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 213 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
-..|++|+.|+.|++|.+...+.- ... ...+|.+.|+++-|+|...++++.|+|++|++||
T Consensus 218 lpliVSG~DDRqVKlWrmnetKaW-EvD-----tcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 218 LPLIVSGADDRQVKLWRMNETKAW-EVD-----TCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD 278 (1202)
T ss_pred cceEEecCCcceeeEEEeccccce-eeh-----hhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence 999999999999999998655432 221 1279999999999999999999999999999997
No 39
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=7.3e-35 Score=219.26 Aligned_cols=220 Identities=19% Similarity=0.240 Sum_probs=176.6
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
|||.|+||++-.. ..+++++.+|..+|.+++|++ +|..+++++.|+.|++||.++ +
T Consensus 235 mD~~vklW~vy~~-~~~lrtf~gH~k~Vrd~~~s~----~g~~fLS~sfD~~lKlwDtET-------------------G 290 (503)
T KOG0282|consen 235 MDGLVKLWNVYDD-RRCLRTFKGHRKPVRDASFNN----CGTSFLSASFDRFLKLWDTET-------------------G 290 (503)
T ss_pred CCceEEEEEEecC-cceehhhhcchhhhhhhhccc----cCCeeeeeecceeeeeecccc-------------------c
Confidence 7999999997763 377999999999999999999 899999999999999999999 5
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
+.+..+. -...++++.|+|++. +.|++|+.|+.|+.||++... ....+ .++..+
T Consensus 291 ~~~~~f~-~~~~~~cvkf~pd~~-n~fl~G~sd~ki~~wDiRs~k---vvqeY-d~hLg~-------------------- 344 (503)
T KOG0282|consen 291 QVLSRFH-LDKVPTCVKFHPDNQ-NIFLVGGSDKKIRQWDIRSGK---VVQEY-DRHLGA-------------------- 344 (503)
T ss_pred eEEEEEe-cCCCceeeecCCCCC-cEEEEecCCCcEEEEeccchH---HHHHH-Hhhhhh--------------------
Confidence 5555554 234689999999995 599999999999999998642 22222 233332
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcE----------------------------------------------E
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRI----------------------------------------------K 194 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----------------------------------------------~ 194 (279)
|..+.|-++++++++.+.|++++||+.+...+ .
T Consensus 345 -i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkk 423 (503)
T KOG0282|consen 345 -ILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKK 423 (503)
T ss_pred -eeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHh
Confidence 46667777777777777777777776653211 1
Q ss_pred EEeecCC--cceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCC-CCEEEEEcC
Q 023643 195 MVFKGHS--DYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS-ESWLVRVRA 271 (279)
Q Consensus 195 ~~~~~~~--~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~ 271 (279)
..|++|. +.-..+.|||||.+|++|+.||.+.+||.++.+.+..+ .+|...+..+.|+|. ...+||++.
T Consensus 424 K~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l--------kah~~~ci~v~wHP~e~Skvat~~w 495 (503)
T KOG0282|consen 424 KRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL--------KAHDQPCIGVDWHPVEPSKVATCGW 495 (503)
T ss_pred hhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc--------ccCCcceEEEEecCCCcceeEeccc
Confidence 1244554 45567899999999999999999999999999999998 789999999999995 467999999
Q ss_pred cceEEeCC
Q 023643 272 TNYVILFS 279 (279)
Q Consensus 272 d~~i~~wd 279 (279)
||.|++|+
T Consensus 496 ~G~Ikiwd 503 (503)
T KOG0282|consen 496 DGLIKIWD 503 (503)
T ss_pred CceeEecC
Confidence 99999997
No 40
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-34 Score=221.64 Aligned_cols=218 Identities=19% Similarity=0.253 Sum_probs=192.5
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
|+.||||+.++.+. ++.++.|.+-|.+++.+| ...++++++.|-+|++||.+.. ..
T Consensus 76 D~~IrVfnynt~ek--V~~FeAH~DyIR~iavHP----t~P~vLtsSDDm~iKlW~we~~------------------wa 131 (794)
T KOG0276|consen 76 DMQIRVFNYNTGEK--VKTFEAHSDYIRSIAVHP----TLPYVLTSSDDMTIKLWDWENE------------------WA 131 (794)
T ss_pred CceEEEEeccccee--eEEeeccccceeeeeecC----CCCeEEecCCccEEEEeeccCc------------------ee
Confidence 78999999999854 889999999999999999 7899999999999999999875 77
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
+.+++.+|+..|.+++|+|... +.++|++-|++|++|.+.. .....++.+|.. .
T Consensus 132 ~~qtfeGH~HyVMqv~fnPkD~-ntFaS~sLDrTVKVWslgs---~~~nfTl~gHek----------------------G 185 (794)
T KOG0276|consen 132 CEQTFEGHEHYVMQVAFNPKDP-NTFASASLDRTVKVWSLGS---PHPNFTLEGHEK----------------------G 185 (794)
T ss_pred eeeEEcCcceEEEEEEecCCCc-cceeeeeccccEEEEEcCC---CCCceeeecccc----------------------C
Confidence 8899999999999999999877 6999999999999999743 344445555433 4
Q ss_pred ceeEEEcCCC--CeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEe
Q 023643 162 NNAIAVDPQG--GAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239 (279)
Q Consensus 162 i~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 239 (279)
|+|+.+-+-| .+|++|+.|.+|++||.++..+++++++|...|.++.|+|.-..+++||+||+++||+-.+-+....+
T Consensus 186 VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 186 VNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL 265 (794)
T ss_pred cceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhh
Confidence 8999998744 59999999999999999999999999999999999999999999999999999999999888877777
Q ss_pred cCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643 240 DPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL 277 (279)
Q Consensus 240 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 277 (279)
.-.-..+++++-.+.+..++.|..+|.|.+
T Consensus 266 --------n~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 266 --------NYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred --------hcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 444568999999998888999988887754
No 41
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.1e-33 Score=207.10 Aligned_cols=248 Identities=19% Similarity=0.209 Sum_probs=184.9
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||++|+||.++ +......+|.++|.+++|.-... ....|++++.|.++++|..+.++.. .
T Consensus 123 YDg~~riWd~~G---k~~~~~~Ght~~ik~v~~v~~n~-~~~~fvsas~Dqtl~Lw~~~~~~~~---------------~ 183 (423)
T KOG0313|consen 123 YDGTSRIWDLKG---KSIKTIVGHTGPIKSVAWVIKNS-SSCLFVSASMDQTLRLWKWNVGENK---------------V 183 (423)
T ss_pred cCCeeEEEecCC---ceEEEEecCCcceeeeEEEecCC-ccceEEEecCCceEEEEEecCchhh---------------h
Confidence 589999999998 66788999999999998865211 2336999999999999999875322 2
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
+.+..-+||...|.+++..+++. .+++|+.|.+|+||+............-..........-.............|..
T Consensus 184 ~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~ 261 (423)
T KOG0313|consen 184 KALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTE 261 (423)
T ss_pred hHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccc
Confidence 33344559999999999999998 9999999999999993321110000000000000000000001111112234555
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce---EE
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC---IK 237 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~---~~ 237 (279)
.|.++.|++ ...+++++.|.+|+.||+.++..+.++.+ ...+.|+.++|..++|++|+.|..|++||.|++.- .+
T Consensus 262 ~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~ 339 (423)
T KOG0313|consen 262 PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQ 339 (423)
T ss_pred ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEE
Confidence 689999998 67899999999999999999999988874 56789999999999999999999999999998642 23
Q ss_pred EecCCccccccCcceeeeEEEEcCCC-CEEEEEcCcceEEeCC
Q 023643 238 VIDPVKDKQLKGVISCVSCITLDASE-SWLVRVRATNYVILFS 279 (279)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd 279 (279)
.+ .+|.+.|.++.|+|.. ..|++|+.|+++++||
T Consensus 340 s~--------~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWD 374 (423)
T KOG0313|consen 340 SL--------IGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWD 374 (423)
T ss_pred ee--------ecchhhhhheecCCCCceEEEEEecCCeEEEEE
Confidence 33 7999999999999965 5678999999999998
No 42
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=7.3e-33 Score=210.74 Aligned_cols=227 Identities=16% Similarity=0.238 Sum_probs=189.9
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecC--C--CcEEEEeCCCCCcccccccCCccccee
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASS--D--GSITSYSIPSCISKLPLGLSNSKVQQL 77 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~--d--g~i~iw~~~~~~~~~~~~~~~~~~~~~ 77 (279)
.|.|||||.......+..+++.-.++|..++|++ ++.+|++.+. + |.+.+||-
T Consensus 80 sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~----ds~RI~avGEGrerfg~~F~~DS------------------- 136 (603)
T KOG0318|consen 80 SGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDF----DSKRIAAVGEGRERFGHVFLWDS------------------- 136 (603)
T ss_pred cCcEEEEeccCcceeeeeeeeecccccccceeCC----CCcEEEEEecCccceeEEEEecC-------------------
Confidence 5899999977655445557788889999999999 8888877653 2 34555654
Q ss_pred eeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643 78 LGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS 157 (279)
Q Consensus 78 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (279)
+..+..+.+|...|+++.|-|..+ ..++||+.|++|.+|+ ++.-+.......| .+
T Consensus 137 --G~SvGei~GhSr~ins~~~KpsRP-fRi~T~sdDn~v~ffe---GPPFKFk~s~r~H-sk------------------ 191 (603)
T KOG0318|consen 137 --GNSVGEITGHSRRINSVDFKPSRP-FRIATGSDDNTVAFFE---GPPFKFKSSFREH-SK------------------ 191 (603)
T ss_pred --CCccceeeccceeEeeeeccCCCc-eEEEeccCCCeEEEee---CCCeeeeeccccc-cc------------------
Confidence 445677889999999999999988 6899999999999998 3333333333322 22
Q ss_pred CCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee---cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCc
Q 023643 158 PVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK---GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGK 234 (279)
Q Consensus 158 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~ 234 (279)
-|+|+.|+|||..+++++.||+|.+||-.+++.+..+. +|.+.|.+++|+||+..+++++.|.+++|||+.+.+
T Consensus 192 ---FV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~s 268 (603)
T KOG0318|consen 192 ---FVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNS 268 (603)
T ss_pred ---ceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccc
Confidence 27999999999999999999999999999999999998 899999999999999999999999999999999988
Q ss_pred eEEEecCCcc-----------------------------------ccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 235 CIKVIDPVKD-----------------------------------KQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 235 ~~~~~~~~~~-----------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
++.++..... ..+.+|...|+++..+|++.+|++|+.||.|.-||
T Consensus 269 lv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 269 LVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWD 348 (603)
T ss_pred eEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEe
Confidence 8887753321 25679999999999999999999999999999996
No 43
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.9e-32 Score=209.69 Aligned_cols=218 Identities=21% Similarity=0.372 Sum_probs=186.8
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
||.|++|+.+.. ..+..+..|...+.++.|+| ++.++++++.+|.|++|++.+ .+
T Consensus 72 ~~~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~i~~~~~~~-------------------~~ 126 (289)
T cd00200 72 DKTIRLWDLETG--ECVRTLTGHTSYVSSVAFSP----DGRILSSSSRDKTIKVWDVET-------------------GK 126 (289)
T ss_pred CCeEEEEEcCcc--cceEEEeccCCcEEEEEEcC----CCCEEEEecCCCeEEEEECCC-------------------cE
Confidence 799999998875 33566778888999999999 788888888899999999986 45
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
....+..|...+.+++|+|++. ++++++.|+.|++||++.... ...+..+ ...
T Consensus 127 ~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~d~~~~~~---~~~~~~~----------------------~~~ 179 (289)
T cd00200 127 CLTTLRGHTDWVNSVAFSPDGT--FVASSSQDGTIKLWDLRTGKC---VATLTGH----------------------TGE 179 (289)
T ss_pred EEEEeccCCCcEEEEEEcCcCC--EEEEEcCCCcEEEEEcccccc---ceeEecC----------------------ccc
Confidence 5666778999999999999976 888888899999999864321 1111111 113
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
+.++.|+|+++.+++++.++.|++||+++++.+..+..|...+.+++|+|++.++++++.||.|++||+.+++....+
T Consensus 180 i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~-- 257 (289)
T cd00200 180 VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL-- 257 (289)
T ss_pred cceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc--
Confidence 789999999999999999999999999999999999889999999999999899999988999999999998888888
Q ss_pred CccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 242 VKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
..|...|.+++|+|++++|++++.|+.+++|+
T Consensus 258 ------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 258 ------SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ------cccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 57778899999999999999999999999997
No 44
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.9e-32 Score=235.56 Aligned_cols=227 Identities=16% Similarity=0.202 Sum_probs=180.4
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||+|++||+++. ..+..+.+|...|++++|+|. ++.+|++|+.||+|++||+.+ +
T Consensus 553 ~Dg~v~lWd~~~~--~~~~~~~~H~~~V~~l~~~p~---~~~~L~Sgs~Dg~v~iWd~~~-------------------~ 608 (793)
T PLN00181 553 FEGVVQVWDVARS--QLVTEMKEHEKRVWSIDYSSA---DPTLLASGSDDGSVKLWSINQ-------------------G 608 (793)
T ss_pred CCCeEEEEECCCC--eEEEEecCCCCCEEEEEEcCC---CCCEEEEEcCCCEEEEEECCC-------------------C
Confidence 4899999998876 346778899999999999973 789999999999999999987 4
Q ss_pred cccccccCCccCeEEEEecC-CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYG-GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV 159 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (279)
..+..+..+ ..+.++.|.+ ++. +|++|+.||.|++||++.... ....+.+ + .
T Consensus 609 ~~~~~~~~~-~~v~~v~~~~~~g~--~latgs~dg~I~iwD~~~~~~--~~~~~~~-h---------------------~ 661 (793)
T PLN00181 609 VSIGTIKTK-ANICCVQFPSESGR--SLAFGSADHKVYYYDLRNPKL--PLCTMIG-H---------------------S 661 (793)
T ss_pred cEEEEEecC-CCeEEEEEeCCCCC--EEEEEeCCCeEEEEECCCCCc--cceEecC-C---------------------C
Confidence 445555544 5799999965 566 999999999999999864321 1111222 1 1
Q ss_pred CCceeEEEcCCCCeEEEecCCCeEEEEecCC------CcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC
Q 023643 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVES------SRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG 233 (279)
Q Consensus 160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~ 233 (279)
..|.++.|. ++.+|++++.|+.|++||++. ..++..+.+|...+.+++|+|++.+|++|+.|+.|++|+....
T Consensus 662 ~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 662 KTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 237889997 678999999999999999974 3578889999999999999999999999999999999998776
Q ss_pred ceEEEecCCc-----cccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 234 KCIKVIDPVK-----DKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 234 ~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
..+..+.... ......+...|.+++|+|++..|++|+.||.|++|+
T Consensus 741 ~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 741 MPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred CceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 5544332111 011234567899999999999999999999999996
No 45
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=3.8e-32 Score=218.19 Aligned_cols=212 Identities=17% Similarity=0.167 Sum_probs=164.4
Q ss_pred eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEec
Q 023643 20 EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFY 99 (279)
Q Consensus 20 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 99 (279)
.+.+|.+.|.+++|+|. ++++|++|+.|++|++||+.+...... ...++..+.+|...|.+++|+
T Consensus 70 ~l~GH~~~V~~v~fsP~---d~~~LaSgS~DgtIkIWdi~~~~~~~~------------~~~~l~~L~gH~~~V~~l~f~ 134 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPF---DPQKLFTASEDGTIMGWGIPEEGLTQN------------ISDPIVHLQGHTKKVGIVSFH 134 (493)
T ss_pred eEeCCCCCEEEEEEcCC---CCCEEEEEeCCCEEEEEecCCCccccc------------cCcceEEecCCCCcEEEEEeC
Confidence 46789999999999993 678999999999999999976321100 024566788999999999999
Q ss_pred CCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC
Q 023643 100 GGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG 179 (279)
Q Consensus 100 ~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 179 (279)
|.+. ++|++++.|++|+|||+++. .....+.++ ...|.+++|+|++.+|++++.
T Consensus 135 P~~~-~iLaSgs~DgtVrIWDl~tg---~~~~~l~~h----------------------~~~V~sla~spdG~lLatgs~ 188 (493)
T PTZ00421 135 PSAM-NVLASAGADMVVNVWDVERG---KAVEVIKCH----------------------SDQITSLEWNLDGSLLCTTSK 188 (493)
T ss_pred cCCC-CEEEEEeCCCEEEEEECCCC---eEEEEEcCC----------------------CCceEEEEEECCCCEEEEecC
Confidence 9863 38999999999999998653 222222221 113799999999999999999
Q ss_pred CCeEEEEecCCCcEEEEeecCCcc-eEEEEEcCCCcEEEEec----CCCeEEEEeCCCCc-eEEEecCCccccccCccee
Q 023643 180 DSCAYCWDVESSRIKMVFKGHSDY-LHCIVARNSTNQIVTGS----EDGTARIWDCKSGK-CIKVIDPVKDKQLKGVISC 253 (279)
Q Consensus 180 d~~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~----~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~ 253 (279)
|+.|++||+++++.+..+.+|.+. +..+.|.+++..+++++ .|+.|++||+++.. +..... ..+...
T Consensus 189 Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~-------~d~~~~ 261 (493)
T PTZ00421 189 DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD-------LDQSSA 261 (493)
T ss_pred CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec-------cCCCCc
Confidence 999999999999999999988765 44677888877777654 58999999998754 333331 122345
Q ss_pred eeEEEEcCCCCEEEEEc-CcceEEeCC
Q 023643 254 VSCITLDASESWLVRVR-ATNYVILFS 279 (279)
Q Consensus 254 v~~~~~~~~~~~l~~~~-~d~~i~~wd 279 (279)
+....|++++.+|++|+ .|+.|++||
T Consensus 262 ~~~~~~d~d~~~L~lggkgDg~Iriwd 288 (493)
T PTZ00421 262 LFIPFFDEDTNLLYIGSKGEGNIRCFE 288 (493)
T ss_pred eEEEEEcCCCCEEEEEEeCCCeEEEEE
Confidence 66678999999999887 599999996
No 46
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=5.9e-34 Score=198.02 Aligned_cols=216 Identities=18% Similarity=0.250 Sum_probs=182.9
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
+|=+.++||.-++. .+..+. |..-|.+++|+. |.++|++|+.+..+||||++.. .
T Consensus 79 adftakvw~a~tgd--elhsf~-hkhivk~~af~~----ds~~lltgg~ekllrvfdln~p------------------~ 133 (334)
T KOG0278|consen 79 ADFTAKVWDAVTGD--ELHSFE-HKHIVKAVAFSQ----DSNYLLTGGQEKLLRVFDLNRP------------------K 133 (334)
T ss_pred ccchhhhhhhhhhh--hhhhhh-hhheeeeEEecc----cchhhhccchHHHhhhhhccCC------------------C
Confidence 35577899966653 366665 888999999999 9999999999999999999975 4
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
.+...+.+|.+.|..+.|+...+ .|+++..|++||+||.++....+ .+.-.+
T Consensus 134 App~E~~ghtg~Ir~v~wc~eD~--~iLSSadd~tVRLWD~rTgt~v~---sL~~~s----------------------- 185 (334)
T KOG0278|consen 134 APPKEISGHTGGIRTVLWCHEDK--CILSSADDKTVRLWDHRTGTEVQ---SLEFNS----------------------- 185 (334)
T ss_pred CCchhhcCCCCcceeEEEeccCc--eEEeeccCCceEEEEeccCcEEE---EEecCC-----------------------
Confidence 56678889999999999999887 89999999999999987653222 221111
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
.|+++.++++|.+|.++. .+.|.+||..+..++..++ -...|.+..++|+...+++|+.|..++.||..+++.+..+.
T Consensus 186 ~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n 263 (334)
T KOG0278|consen 186 PVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN 263 (334)
T ss_pred CCcceeeccCCCEEEEec-CceeEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeecc
Confidence 278999999998776655 5789999999998888877 44568889999999999999999999999999999888753
Q ss_pred CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
++|.++|.|+.|+|+|...++||+||+|++|
T Consensus 264 -------kgh~gpVhcVrFSPdGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 264 -------KGHFGPVHCVRFSPDGELYASGSEDGTIRLW 294 (334)
T ss_pred -------cCCCCceEEEEECCCCceeeccCCCceEEEE
Confidence 7999999999999999999999999999999
No 47
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.6e-33 Score=198.64 Aligned_cols=205 Identities=18% Similarity=0.322 Sum_probs=175.3
Q ss_pred ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEE
Q 023643 17 ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDV 96 (279)
Q Consensus 17 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 96 (279)
.+..+.+|.++|+.+.|+| ++.+||+|+.|..|.+|++... .+-...+++|.+.|..+
T Consensus 39 p~m~l~gh~geI~~~~F~P----~gs~~aSgG~Dr~I~LWnv~gd------------------ceN~~~lkgHsgAVM~l 96 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHP----DGSCFASGGSDRAIVLWNVYGD------------------CENFWVLKGHSGAVMEL 96 (338)
T ss_pred hhhhcCCCcceEEEEEECC----CCCeEeecCCcceEEEEecccc------------------ccceeeeccccceeEee
Confidence 3456789999999999999 9999999999999999997653 34456677999999999
Q ss_pred EecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC-CeEE
Q 023643 97 KFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG-GAIF 175 (279)
Q Consensus 97 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~ 175 (279)
.|.+++. .+++++.|.+++.||.+++ +.....+++.. -++++.-+.-| .++.
T Consensus 97 ~~~~d~s--~i~S~gtDk~v~~wD~~tG---~~~rk~k~h~~----------------------~vNs~~p~rrg~~lv~ 149 (338)
T KOG0265|consen 97 HGMRDGS--HILSCGTDKTVRGWDAETG---KRIRKHKGHTS----------------------FVNSLDPSRRGPQLVC 149 (338)
T ss_pred eeccCCC--EEEEecCCceEEEEecccc---eeeehhccccc----------------------eeeecCccccCCeEEE
Confidence 9999998 9999999999999998654 44444444321 14555533223 3677
Q ss_pred EecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeee
Q 023643 176 SAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVS 255 (279)
Q Consensus 176 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 255 (279)
+++.|+++++||+++.+.+.++. ....++++.|..++..+.+|+-|+.|++||++.+...+.+ .+|..+|+
T Consensus 150 SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~l--------sGh~DtIt 220 (338)
T KOG0265|consen 150 SGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTL--------SGHADTIT 220 (338)
T ss_pred ecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEe--------ecccCcee
Confidence 89999999999999999888886 4567999999999999999999999999999999999999 89999999
Q ss_pred EEEEcCCCCEEEEEcCcceEEeCC
Q 023643 256 CITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 256 ~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+..+|+|.++.+-+.|.++++||
T Consensus 221 ~lsls~~gs~llsnsMd~tvrvwd 244 (338)
T KOG0265|consen 221 GLSLSRYGSFLLSNSMDNTVRVWD 244 (338)
T ss_pred eEEeccCCCccccccccceEEEEE
Confidence 999999999999999999999997
No 48
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.8e-32 Score=234.53 Aligned_cols=219 Identities=14% Similarity=0.257 Sum_probs=176.5
Q ss_pred CCCceeeeccccccc------cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccc
Q 023643 1 MCGDSTNWDEDAYRK------SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKV 74 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 74 (279)
.||.|+||+.+.... ....... +...|.+++|+|. ++.+||+++.||+|++||+.+
T Consensus 503 ~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~---~~~~las~~~Dg~v~lWd~~~-------------- 564 (793)
T PLN00181 503 VNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSY---IKSQVASSNFEGVVQVWDVAR-------------- 564 (793)
T ss_pred CCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccC---CCCEEEEEeCCCeEEEEECCC--------------
Confidence 489999999753210 0112222 3468999999983 678999999999999999987
Q ss_pred ceeeeccccccccCCccCeEEEEecC-CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcc
Q 023643 75 QQLLGIEPDGFLHGHDGPAYDVKFYG-GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPW 153 (279)
Q Consensus 75 ~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (279)
.+.+..+.+|.+.|++++|+| ++. +|++|+.|++|++||++... ....+..+
T Consensus 565 -----~~~~~~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~---~~~~~~~~----------------- 617 (793)
T PLN00181 565 -----SQLVTEMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGV---SIGTIKTK----------------- 617 (793)
T ss_pred -----CeEEEEecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCc---EEEEEecC-----------------
Confidence 566677889999999999997 566 99999999999999986432 11121111
Q ss_pred ccCCCCCCceeEEEc-CCCCeEEEecCCCeEEEEecCCCc-EEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC
Q 023643 154 GALSPVPENNAIAVD-PQGGAIFSAAGDSCAYCWDVESSR-IKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK 231 (279)
Q Consensus 154 ~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~ 231 (279)
..+.++.|+ +++.+|++|+.|+.|++||+++.+ ++..+.+|...|.++.|. ++.+|++++.|++|++||++
T Consensus 618 ------~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 618 ------ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred ------CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence 026788995 578899999999999999998765 567788999999999996 67899999999999999997
Q ss_pred CC------ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 232 SG------KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 232 ~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+ +++..+ .+|...+..++|+|++.+|++|+.|+.|++|+
T Consensus 691 ~~~~~~~~~~l~~~--------~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 691 MSISGINETPLHSF--------MGHTNVKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred CCccccCCcceEEE--------cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 53 455555 68888999999999999999999999999996
No 49
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.7e-33 Score=191.71 Aligned_cols=229 Identities=18% Similarity=0.242 Sum_probs=182.2
Q ss_pred CCCceeeeccccccc-cceeeeeecccceEEEEE-CCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643 1 MCGDSTNWDEDAYRK-SILKEREILTRTVFRTVW-GPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL 78 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~-~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 78 (279)
.||+|||+...+... ..+.++.+|.++|+.++| +|. -|.+||+++.||.|.||.-..+.
T Consensus 31 SD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk---~G~iLAScsYDgkVIiWke~~g~---------------- 91 (299)
T KOG1332|consen 31 SDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPK---FGTILASCSYDGKVIIWKEENGR---------------- 91 (299)
T ss_pred CCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccc---cCcEeeEeecCceEEEEecCCCc----------------
Confidence 389999999776654 678899999999999999 563 79999999999999999988742
Q ss_pred eccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643 79 GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP 158 (279)
Q Consensus 79 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (279)
.........|...|++++|.|.+-+..|+.++.||.|.|.+.+............ .|
T Consensus 92 -w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~----------------------aH 148 (299)
T KOG1332|consen 92 -WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVF----------------------AH 148 (299)
T ss_pred -hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhh----------------------cc
Confidence 4555667789999999999998877799999999999999987531111111111 22
Q ss_pred CCCceeEEEcCC---C-----------CeEEEecCCCeEEEEecCCC--cEEEEeecCCcceEEEEEcCC----CcEEEE
Q 023643 159 VPENNAIAVDPQ---G-----------GAIFSAAGDSCAYCWDVESS--RIKMVFKGHSDYLHCIVARNS----TNQIVT 218 (279)
Q Consensus 159 ~~~i~~~~~~~~---~-----------~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~i~~i~~~~~----~~~l~~ 218 (279)
...|++++|.|. | +.|++|+.|..|+||+..++ +..+.|.+|.+.|+.++|.|. ..+|++
T Consensus 149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS 228 (299)
T KOG1332|consen 149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIAS 228 (299)
T ss_pred ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEE
Confidence 224788999885 3 46999999999999999875 344568999999999999995 357999
Q ss_pred ecCCCeEEEEeCCCC--ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 219 GSEDGTARIWDCKSG--KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 219 ~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
+|.||++.||-.+.. ....++ +......+..+.|++.|+.|+.++.|+.|.+|
T Consensus 229 ~SqDg~viIwt~~~e~e~wk~tl-------l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlw 283 (299)
T KOG1332|consen 229 CSQDGTVIIWTKDEEYEPWKKTL-------LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLW 283 (299)
T ss_pred ecCCCcEEEEEecCccCcccccc-------cccCCcceEEEEEeccccEEEEecCCcEEEEE
Confidence 999999999986532 111122 13455679999999999999999999999998
No 50
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=2e-32 Score=192.06 Aligned_cols=233 Identities=16% Similarity=0.194 Sum_probs=187.5
Q ss_pred eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEec
Q 023643 20 EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFY 99 (279)
Q Consensus 20 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 99 (279)
.+.+|..+++.+.|+. +|++|++++.|.+..||-... ++.+.++.+|++.|+++...
T Consensus 5 ~l~GHERplTqiKyN~----eGDLlFscaKD~~~~vw~s~n-------------------GerlGty~GHtGavW~~Did 61 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNR----EGDLLFSCAKDSTPTVWYSLN-------------------GERLGTYDGHTGAVWCCDID 61 (327)
T ss_pred ccccCccccceEEecC----CCcEEEEecCCCCceEEEecC-------------------CceeeeecCCCceEEEEEec
Confidence 3568999999999999 999999999999999998866 78889999999999999999
Q ss_pred CCCCceEEEEeeCCCcEEEeecCCCccCcce----------eeeccC-------------cccceEEeecCC----CCC-
Q 023643 100 GGNEDALLLSCGDDGRICGWRWKEFTESKVP----------INLQGN-------------HVKPVLDLVNHQ----HKG- 151 (279)
Q Consensus 100 ~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~----------~~~~~~-------------~~~~~~~~~~~~----~~~- 151 (279)
-+.+ .++||+.|.++++||+++++..... ....++ ....++++.... ...
T Consensus 62 ~~s~--~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep 139 (327)
T KOG0643|consen 62 WDSK--HLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP 139 (327)
T ss_pred CCcc--eeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCc
Confidence 8887 9999999999999999875321100 000010 000122222111 111
Q ss_pred ccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCC-cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeC
Q 023643 152 PWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS-RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDC 230 (279)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~ 230 (279)
......+...++.+.|.|-++.|++|..||.|.+||++++ +.+..-+.|...|+.|+++|+..+++++|.|.+-++||.
T Consensus 140 ~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~ 219 (327)
T KOG0643|consen 140 YLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDV 219 (327)
T ss_pred eEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeec
Confidence 2233556678999999999999999999999999999997 556666789999999999999999999999999999999
Q ss_pred CCCceEEEecCCcc-----------------------------------------------ccccCcceeeeEEEEcCCC
Q 023643 231 KSGKCIKVIDPVKD-----------------------------------------------KQLKGVISCVSCITLDASE 263 (279)
Q Consensus 231 ~~~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~v~~~~~~~~~ 263 (279)
++.+.++++..... ..+++|-++|++++|+|+|
T Consensus 220 ~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdG 299 (327)
T KOG0643|consen 220 RTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDG 299 (327)
T ss_pred cceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCC
Confidence 99887777652211 2567999999999999999
Q ss_pred CEEEEEcCcceEEe
Q 023643 264 SWLVRVRATNYVIL 277 (279)
Q Consensus 264 ~~l~~~~~d~~i~~ 277 (279)
+..++|++||.|++
T Consensus 300 ksYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 300 KSYSSGGEDGYVRL 313 (327)
T ss_pred cccccCCCCceEEE
Confidence 99999999999987
No 51
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.3e-32 Score=197.85 Aligned_cols=242 Identities=19% Similarity=0.237 Sum_probs=186.7
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
|+|.|+||...++.. ...+...-+.+.=+.|+| .+..|++|+.||.+.+|.+.. .
T Consensus 126 msG~v~v~~~stg~~--~~~~~~e~~dieWl~WHp----~a~illAG~~DGsvWmw~ip~-------------------~ 180 (399)
T KOG0296|consen 126 MSGKVLVFKVSTGGE--QWKLDQEVEDIEWLKWHP----RAHILLAGSTDGSVWMWQIPS-------------------Q 180 (399)
T ss_pred CCccEEEEEcccCce--EEEeecccCceEEEEecc----cccEEEeecCCCcEEEEECCC-------------------c
Confidence 789999999887643 333434567788899999 899999999999999999997 4
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCccee------------------eeccCcccceE
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPI------------------NLQGNHVKPVL 142 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~------------------~~~~~~~~~~~ 142 (279)
...+.+.+|..++++=.|.|+|+ .++++..||+|++|++.+........ .+.++...++.
T Consensus 181 ~~~kv~~Gh~~~ct~G~f~pdGK--r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~ 258 (399)
T KOG0296|consen 181 ALCKVMSGHNSPCTCGEFIPDGK--RILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVAC 258 (399)
T ss_pred ceeeEecCCCCCcccccccCCCc--eEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEE
Confidence 56678899999999999999998 99999999999999987653211111 01111111111
Q ss_pred Eee--------cCCCCCccccCCCCCCcee---EEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcC
Q 023643 143 DLV--------NHQHKGPWGALSPVPENNA---IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARN 211 (279)
Q Consensus 143 ~~~--------~~~~~~~~~~~~~~~~i~~---~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~ 211 (279)
-.. ......+.........+.| +.++..-++.|+|+-||+|.|||+...++.+.+. |..+|..+.|-+
T Consensus 259 ~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~ 337 (399)
T KOG0296|consen 259 GVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN 337 (399)
T ss_pred EEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC
Confidence 000 0000111111222233344 4455566688999999999999999888777776 888999999998
Q ss_pred CCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 212 STNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 212 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
..+|++++.+|.|+.||.|+|+++.++ .+|...|.+++++|+.++++|+|.|++.+||+
T Consensus 338 -t~~l~t~c~~g~v~~wDaRtG~l~~~y--------~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 338 -TDYLLTACANGKVRQWDARTGQLKFTY--------TGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred -cchheeeccCceEEeeeccccceEEEE--------ecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 789999999999999999999999999 89999999999999999999999999999984
No 52
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-32 Score=202.82 Aligned_cols=241 Identities=16% Similarity=0.223 Sum_probs=185.7
Q ss_pred CCceeeecccc-ccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 2 CGDSTNWDEDA-YRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 2 dG~v~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
|-+.-+|.+.. ...++.+++.+|..+|..+.||| |.++|++++.|..+.+||+.+ +
T Consensus 245 D~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP----DdryLlaCg~~e~~~lwDv~t-------------------g 301 (519)
T KOG0293|consen 245 DSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP----DDRYLLACGFDEVLSLWDVDT-------------------G 301 (519)
T ss_pred CceEEEEEEecCcceeeeeeeecccCceEEEEECC----CCCeEEecCchHheeeccCCc-------------------c
Confidence 45667787432 22466789999999999999999 899999999999999999999 4
Q ss_pred ccccccc-CCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEee------------cC
Q 023643 81 EPDGFLH-GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLV------------NH 147 (279)
Q Consensus 81 ~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~ 147 (279)
+....+. +|...+.+.+|.|++. .+++|+.|+++..||++.... ....+.....++++. ..
T Consensus 302 d~~~~y~~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~wdlDgn~~----~~W~gvr~~~v~dlait~Dgk~vl~v~~d 375 (519)
T KOG0293|consen 302 DLRHLYPSGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMWDLDGNIL----GNWEGVRDPKVHDLAITYDGKYVLLVTVD 375 (519)
T ss_pred hhhhhcccCcCCCcceeEEccCCc--eeEecCCCCcEEEecCCcchh----hcccccccceeEEEEEcCCCcEEEEEecc
Confidence 4444443 3567899999999998 999999999999999864221 111111112222221 11
Q ss_pred CCC--------CccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcc--eEEEEEcC-CCcEE
Q 023643 148 QHK--------GPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDY--LHCIVARN-STNQI 216 (279)
Q Consensus 148 ~~~--------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--i~~i~~~~-~~~~l 216 (279)
... ..........+|+++..+.+++++++.-.+..|++||+...+.++.+.+|... +-.-+|-. +..++
T Consensus 376 ~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fi 455 (519)
T KOG0293|consen 376 KKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFI 455 (519)
T ss_pred cceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceE
Confidence 111 11112334457899999999999999989999999999999999999998754 33335544 45899
Q ss_pred EEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCC-CCEEEEEcCcceEEeCC
Q 023643 217 VTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS-ESWLVRVRATNYVILFS 279 (279)
Q Consensus 217 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd 279 (279)
++||+|+.|+||+..+|+++.++ .+|...|++++|+|. -..+|+||.||+|++|-
T Consensus 456 aSGSED~kvyIWhr~sgkll~~L--------sGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 456 ASGSEDSKVYIWHRISGKLLAVL--------SGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred EecCCCceEEEEEccCCceeEee--------cCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 99999999999999999999999 799999999999995 46789999999999993
No 53
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.6e-31 Score=204.53 Aligned_cols=218 Identities=21% Similarity=0.343 Sum_probs=185.9
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
||.+++|+.+... .......|...+..+.|+| ++++|++++.||.|++|++.+ .+
T Consensus 30 ~g~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~~~~i~i~~~~~-------------------~~ 84 (289)
T cd00200 30 DGTIKVWDLETGE--LLRTLKGHTGPVRDVAASA----DGTYLASGSSDKTIRLWDLET-------------------GE 84 (289)
T ss_pred CcEEEEEEeeCCC--cEEEEecCCcceeEEEECC----CCCEEEEEcCCCeEEEEEcCc-------------------cc
Confidence 7899999988764 4566778889999999999 889999999999999999997 45
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
....+..|...+.++.|+|++. ++++++.|+.|++||+++. .....+..+ ...
T Consensus 85 ~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~---~~~~~~~~~----------------------~~~ 137 (289)
T cd00200 85 CVRTLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETG---KCLTTLRGH----------------------TDW 137 (289)
T ss_pred ceEEEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCc---EEEEEeccC----------------------CCc
Confidence 5666778888999999999976 8888888999999998632 111111111 113
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
+.++.|+|++.++++++.++.|++||+++++.+..+..|...+.+++|+|+++.+++++.|+.|++||++.++.+..+
T Consensus 138 i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~-- 215 (289)
T cd00200 138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL-- 215 (289)
T ss_pred EEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch--
Confidence 789999999888888888999999999999999999999999999999999999999999999999999998888777
Q ss_pred CccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 242 VKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
..|...+.+++|+|++.++++++.||.+++||
T Consensus 216 ------~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~ 247 (289)
T cd00200 216 ------RGHENGVNSVAFSPDGYLLASGSEDGTIRVWD 247 (289)
T ss_pred ------hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEE
Confidence 56777999999999999999988899999996
No 54
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.3e-32 Score=213.07 Aligned_cols=218 Identities=15% Similarity=0.299 Sum_probs=189.4
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCC-CcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSD-GSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.|...+|++-.. .+++.+.....+|..++|+. .|+.||.|+.. |++-||+.++ .
T Consensus 286 sG~f~LyelP~f--~lih~LSis~~~I~t~~~N~----tGDWiA~g~~klgQLlVweWqs-------------------E 340 (893)
T KOG0291|consen 286 SGEFGLYELPDF--NLIHSLSISDQKILTVSFNS----TGDWIAFGCSKLGQLLVWEWQS-------------------E 340 (893)
T ss_pred CCeeEEEecCCc--eEEEEeecccceeeEEEecc----cCCEEEEcCCccceEEEEEeec-------------------c
Confidence 466677776655 44777777778999999999 89999998765 8999999998 4
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
..+...++|...+++++++|+|+ +++||+.||.|+|||.. ...+..++..+..
T Consensus 341 sYVlKQQgH~~~i~~l~YSpDgq--~iaTG~eDgKVKvWn~~---SgfC~vTFteHts---------------------- 393 (893)
T KOG0291|consen 341 SYVLKQQGHSDRITSLAYSPDGQ--LIATGAEDGKVKVWNTQ---SGFCFVTFTEHTS---------------------- 393 (893)
T ss_pred ceeeeccccccceeeEEECCCCc--EEEeccCCCcEEEEecc---CceEEEEeccCCC----------------------
Confidence 56677789999999999999998 99999999999999964 4456666655432
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCC-cceEEEEEcCCCcEEEEecCCCe-EEEEeCCCCceEEE
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHS-DYLHCIVARNSTNQIVTGSEDGT-ARIWDCKSGKCIKV 238 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d~~-i~vwd~~~~~~~~~ 238 (279)
.|+.+.|+..++.+++.+.||+|+.||+...+..++|.... -...|++..|.|..+++|+.|.. |.||++++|+.+..
T Consensus 394 ~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 394 GVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI 473 (893)
T ss_pred ceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh
Confidence 37999999999999999999999999999999999998543 45678999999999999998875 99999999999999
Q ss_pred ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+ .+|.++|.+++|+|++..|++||.|.+|++||
T Consensus 474 L--------sGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 474 L--------SGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD 506 (893)
T ss_pred h--------cCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence 9 89999999999999999999999999999996
No 55
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=9.7e-33 Score=204.20 Aligned_cols=247 Identities=16% Similarity=0.222 Sum_probs=198.4
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
+|..|++|+..+.......++.+..++|+++.|.+ ++..+++++.|+.+++|+++. .
T Consensus 195 ~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~----~~~~~iAas~d~~~r~Wnvd~-------------------~ 251 (459)
T KOG0288|consen 195 SDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDS----DNKHVIAASNDKNLRLWNVDS-------------------L 251 (459)
T ss_pred hhhhhhhhhcccchhhhhhhhhccCCCcceeeecC----CCceEEeecCCCceeeeeccc-------------------h
Confidence 47789999988887777888998899999999999 899999999999999999998 7
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceee--------------eccCcccceEEeec
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPIN--------------LQGNHVKPVLDLVN 146 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~ 146 (279)
+...++.+|++.|+++.|..... .+++|+.|.+|++||+......+.+.. +.+|..+. ..+..
T Consensus 252 r~~~TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~Dkk-vRfwD 328 (459)
T KOG0288|consen 252 RLRHTLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKK-VRFWD 328 (459)
T ss_pred hhhhhhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccc-eEEEe
Confidence 88999999999999999998876 699999999999999976433222221 11221111 11111
Q ss_pred CCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecC----CcceEEEEEcCCCcEEEEecCC
Q 023643 147 HQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGH----SDYLHCIVARNSTNQIVTGSED 222 (279)
Q Consensus 147 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~----~~~i~~i~~~~~~~~l~~~~~d 222 (279)
.............+.|+++..++++..+.+.+.|.++.+.|+++.+....+... ....+.+.|||++.|+++||.|
T Consensus 329 ~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~d 408 (459)
T KOG0288|consen 329 IRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSAD 408 (459)
T ss_pred ccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCC
Confidence 111112222333457999999999999999999999999999999888877532 2347889999999999999999
Q ss_pred CeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 223 GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 223 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
|.|+||++.++++...+... .....|++++|+|.|..|++++.++.+.+|-
T Consensus 409 gsv~iW~v~tgKlE~~l~~s------~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 409 GSVYIWSVFTGKLEKVLSLS------TSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CcEEEEEccCceEEEEeccC------CCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999999999999998642 2223799999999999999999999999993
No 56
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-31 Score=209.19 Aligned_cols=223 Identities=20% Similarity=0.328 Sum_probs=186.9
Q ss_pred ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccc
Q 023643 4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPD 83 (279)
Q Consensus 4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (279)
.|.+|+........+..+ +...|+++.|++ +|.+||+|..+|.|.|||..+ .+.+
T Consensus 198 ~vylW~~~s~~v~~l~~~--~~~~vtSv~ws~----~G~~LavG~~~g~v~iwD~~~-------------------~k~~ 252 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSF--GEELVTSVKWSP----DGSHLAVGTSDGTVQIWDVKE-------------------QKKT 252 (484)
T ss_pred eEEEEecCCCceEEeEec--CCCceEEEEECC----CCCEEEEeecCCeEEEEehhh-------------------cccc
Confidence 689999877754334333 378999999999 999999999999999999998 5667
Q ss_pred ccccC-CccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCc
Q 023643 84 GFLHG-HDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPEN 162 (279)
Q Consensus 84 ~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 162 (279)
..+.+ |...|-+++|... .+.+|+.|+.|..+|++....... .+.++. ..|
T Consensus 253 ~~~~~~h~~rvg~laW~~~----~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~----------------------qeV 304 (484)
T KOG0305|consen 253 RTLRGSHASRVGSLAWNSS----VLSSGSRDGKILNHDVRISQHVVS--TLQGHR----------------------QEV 304 (484)
T ss_pred ccccCCcCceeEEEeccCc----eEEEecCCCcEEEEEEecchhhhh--hhhccc----------------------cee
Confidence 77887 9999999999833 899999999999999875432222 122222 237
Q ss_pred eeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcC-CCcEEEEec--CCCeEEEEeCCCCceEEEe
Q 023643 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARN-STNQIVTGS--EDGTARIWDCKSGKCIKVI 239 (279)
Q Consensus 163 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~--~d~~i~vwd~~~~~~~~~~ 239 (279)
-.++|++++.++++|+.|+.+.|||....+++..+..|.+.|.+++|+| ....||+|+ .|+.|++||..+++.+..+
T Consensus 305 CgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v 384 (484)
T KOG0305|consen 305 CGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV 384 (484)
T ss_pred eeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc
Confidence 8999999999999999999999999988999999999999999999999 578888875 6999999999988777665
Q ss_pred cCCcc-----------------------------------ccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 240 DPVKD-----------------------------------KQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 240 ~~~~~-----------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
....+ ..+.+|...|..++++|||..+++|+.|.++++|+
T Consensus 385 dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 385 DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 42211 25679999999999999999999999999999995
No 57
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=1.5e-32 Score=196.84 Aligned_cols=222 Identities=16% Similarity=0.239 Sum_probs=177.8
Q ss_pred eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccc-ccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643 20 EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKL-PLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF 98 (279)
Q Consensus 20 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 98 (279)
.+..|.+++.+.+|+| ||.++|+|+.|..|+|.|++..-... ..+........ ..-.++++-.|.++|+++.|
T Consensus 107 ylt~HK~~cR~aafs~----DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa--~hPvIRTlYDH~devn~l~F 180 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSP----DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQA--RHPVIRTLYDHVDEVNDLDF 180 (430)
T ss_pred EEeecccceeeeeeCC----CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCccc--CCceEeehhhccCcccceee
Confidence 4567999999999999 99999999999999999998532111 11111111000 02345778889999999999
Q ss_pred cCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec
Q 023643 99 YGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA 178 (279)
Q Consensus 99 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 178 (279)
+|... .|++++.|++|++||+......+....++. ...|.+++|+|.|.+|++|.
T Consensus 181 HPre~--ILiS~srD~tvKlFDfsK~saKrA~K~~qd-----------------------~~~vrsiSfHPsGefllvgT 235 (430)
T KOG0640|consen 181 HPRET--ILISGSRDNTVKLFDFSKTSAKRAFKVFQD-----------------------TEPVRSISFHPSGEFLLVGT 235 (430)
T ss_pred cchhh--eEEeccCCCeEEEEecccHHHHHHHHHhhc-----------------------cceeeeEeecCCCceEEEec
Confidence 99998 999999999999999864321111111111 11379999999999999999
Q ss_pred CCCeEEEEecCCCcEEEEe---ecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcc-eee
Q 023643 179 GDSCAYCWDVESSRIKMVF---KGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVI-SCV 254 (279)
Q Consensus 179 ~d~~i~i~d~~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~v 254 (279)
.-..+++||+.+.++...- ..|.+.|+++.+++.+++.+++|.||.|++||--+++++.++. .+|. ..|
T Consensus 236 dHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~-------~AH~gsev 308 (430)
T KOG0640|consen 236 DHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG-------NAHGGSEV 308 (430)
T ss_pred CCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH-------hhcCCcee
Confidence 9999999999998776544 3588999999999999999999999999999999999999986 4564 578
Q ss_pred eEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 255 SCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 255 ~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+..|..+++|+++.+.|..+++|.
T Consensus 309 cSa~Ftkn~kyiLsSG~DS~vkLWE 333 (430)
T KOG0640|consen 309 CSAVFTKNGKYILSSGKDSTVKLWE 333 (430)
T ss_pred eeEEEccCCeEEeecCCcceeeeee
Confidence 9999999999999999999999994
No 58
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2e-33 Score=204.19 Aligned_cols=219 Identities=20% Similarity=0.307 Sum_probs=178.5
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
|.+|++||.+++ ++++++-+|.+.|..+.|+. .++++++.|.+|.+||+..... ..
T Consensus 256 DsTvrvWDv~tg--e~l~tlihHceaVLhlrf~n------g~mvtcSkDrsiaVWdm~sps~----------------it 311 (499)
T KOG0281|consen 256 DSTVRVWDVNTG--EPLNTLIHHCEAVLHLRFSN------GYMVTCSKDRSIAVWDMASPTD----------------IT 311 (499)
T ss_pred CceEEEEeccCC--chhhHHhhhcceeEEEEEeC------CEEEEecCCceeEEEeccCchH----------------HH
Confidence 789999999998 45889999999999999987 7999999999999999987421 34
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
..+.+.||...|+.+.|... ++++++.|.+|++|++.+ ...+..+.++.. .
T Consensus 312 ~rrVLvGHrAaVNvVdfd~k----yIVsASgDRTikvW~~st---~efvRtl~gHkR----------------------G 362 (499)
T KOG0281|consen 312 LRRVLVGHRAAVNVVDFDDK----YIVSASGDRTIKVWSTST---CEFVRTLNGHKR----------------------G 362 (499)
T ss_pred HHHHHhhhhhheeeeccccc----eEEEecCCceEEEEeccc---eeeehhhhcccc----------------------c
Confidence 56778899999999999743 999999999999999764 355555555432 2
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
|-|+.+ .++++++|+.|.+|++||+..|.+++.+++|+.-|+|+.|. .+.+++|..||+|+|||+..+........
T Consensus 363 IAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~ 438 (499)
T KOG0281|consen 363 IACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPAS 438 (499)
T ss_pred ceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCccccc
Confidence 455555 57899999999999999999999999999999999999995 78999999999999999987543211100
Q ss_pred C-ccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 242 V-KDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 242 ~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
. ....+..|.+.|..+.|+ ...+++++-|.+|.+||
T Consensus 439 ~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 439 TLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWD 475 (499)
T ss_pred chHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEE
Confidence 0 011226788899999985 57799999999999997
No 59
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.5e-32 Score=199.08 Aligned_cols=237 Identities=16% Similarity=0.216 Sum_probs=186.1
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccc---------------
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKL--------------- 65 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--------------- 65 (279)
+||.|++||+... .++..+..|.+.|..|++.. ..+++++.|.+|+.|.++......
T Consensus 87 ~DG~VkiWnlsqR--~~~~~f~AH~G~V~Gi~v~~------~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~ 158 (433)
T KOG0268|consen 87 CDGEVKIWNLSQR--ECIRTFKAHEGLVRGICVTQ------TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRK 158 (433)
T ss_pred cCceEEEEehhhh--hhhheeecccCceeeEEecc------cceEEecCCcceeeeeccCCcceeeeccccccccccccc
Confidence 5999999998876 55888999999999999976 678899999999999976421110
Q ss_pred -ccccCCcccceeee---ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccce
Q 023643 66 -PLGLSNSKVQQLLG---IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPV 141 (279)
Q Consensus 66 -~~~~~~~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 141 (279)
......+..-.++. ..|+..+..-...|.++.|+|... ..|++|+.|++|.+||++.......+..-.
T Consensus 159 ~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~~m------- 230 (433)
T KOG0268|consen 159 NSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVILTM------- 230 (433)
T ss_pred cccccccCceeeecccccCCccceeecCCCceeEEecCCCcc-hheeeeccCCceEEEecccCCccceeeeec-------
Confidence 00001111111221 446667776677899999999877 588999999999999998653322222111
Q ss_pred EEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCC-CcEEEEeecCCcceEEEEEcCCCcEEEEec
Q 023643 142 LDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVES-SRIKMVFKGHSDYLHCIVARNSTNQIVTGS 220 (279)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 220 (279)
..+.|+|+|..-.+++|..|..++.||++. .+++..+++|.+.|.+++|+|.|+.+++||
T Consensus 231 -------------------RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs 291 (433)
T KOG0268|consen 231 -------------------RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS 291 (433)
T ss_pred -------------------cccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccc
Confidence 137899999777888999999999999987 468888999999999999999999999999
Q ss_pred CCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 221 EDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 221 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.|.+|+||..+.+.....+. ...-..|.++.|+.|.+++++||.|+.|++|-
T Consensus 292 yDksIRIf~~~~~~SRdiYh-------tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 292 YDKSIRIFPVNHGHSRDIYH-------TKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred ccceEEEeecCCCcchhhhh-------HhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 99999999999887766653 22335699999999999999999999999993
No 60
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.2e-32 Score=215.38 Aligned_cols=226 Identities=14% Similarity=0.169 Sum_probs=170.8
Q ss_pred eeee-ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccc--------------------ccccCC------
Q 023643 19 KERE-ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKL--------------------PLGLSN------ 71 (279)
Q Consensus 19 ~~~~-~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--------------------~~~~~~------ 71 (279)
+.+. .|.+.|+++.|++ ||+|||+|+.||.|+||.+...+... +.....
T Consensus 260 Qe~~~ah~gaIw~mKFS~----DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSH----DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR 335 (712)
T ss_pred eccccccCCcEEEEEeCC----CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence 3455 8999999999999 99999999999999999987621110 000000
Q ss_pred --------cc-------cceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccC
Q 023643 72 --------SK-------VQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGN 136 (279)
Q Consensus 72 --------~~-------~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 136 (279)
.. ..-.+..+|++.+.||.+.|..|.|+.++ +|++++.|.+||+|++... .+...+
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~---~CL~~F--- 406 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRK---ECLKVF--- 406 (712)
T ss_pred ccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCc---ceeeEE---
Confidence 00 00111268889999999999999999886 8999999999999997543 222222
Q ss_pred cccceEEeecCCCCCccccCCCCCCceeEEEcC-CCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcE
Q 023643 137 HVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP-QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ 215 (279)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 215 (279)
.|...|+|++|+| |.+++++|+-|+.|+||++...+.+.-.. -..-|++++|.|+|++
T Consensus 407 --------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~ 465 (712)
T KOG0283|consen 407 --------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKG 465 (712)
T ss_pred --------------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCce
Confidence 2222489999999 77899999999999999998776666444 3478999999999999
Q ss_pred EEEecCCCeEEEEeCCCCceEEEecCCcccc-ccCcceeeeEEEEcCCC-CEEEEEcCcceEEeCC
Q 023643 216 IVTGSEDGTARIWDCKSGKCIKVIDPVKDKQ-LKGVISCVSCITLDASE-SWLVRVRATNYVILFS 279 (279)
Q Consensus 216 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd 279 (279)
.+.|+.+|.+++|+....+............ -..|. .|+++.|.|.. ..+++.+.|..|+|||
T Consensus 466 avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d 530 (712)
T KOG0283|consen 466 AVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYD 530 (712)
T ss_pred EEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEe
Confidence 9999999999999998887776654322111 11233 89999999743 3577778999999987
No 61
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-31 Score=201.03 Aligned_cols=216 Identities=18% Similarity=0.294 Sum_probs=181.8
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
.|.|+|+|.++. .++..+..|+.+|..+.|+|. ++..|++|+.|+.+++||+.+. .
T Consensus 89 sG~V~vfD~k~r--~iLR~~~ah~apv~~~~f~~~---d~t~l~s~sDd~v~k~~d~s~a-------------------~ 144 (487)
T KOG0310|consen 89 SGHVKVFDMKSR--VILRQLYAHQAPVHVTKFSPQ---DNTMLVSGSDDKVVKYWDLSTA-------------------Y 144 (487)
T ss_pred cCcEEEeccccH--HHHHHHhhccCceeEEEeccc---CCeEEEecCCCceEEEEEcCCc-------------------E
Confidence 589999996653 568889999999999999995 8888999999999999999983 3
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
....+.+|++.|.+.+|+|... ++++|||.||.|++||++... ..+..+. +. .+
T Consensus 145 v~~~l~~htDYVR~g~~~~~~~-hivvtGsYDg~vrl~DtR~~~--~~v~eln--hg---------------------~p 198 (487)
T KOG0310|consen 145 VQAELSGHTDYVRCGDISPAND-HIVVTGSYDGKVRLWDTRSLT--SRVVELN--HG---------------------CP 198 (487)
T ss_pred EEEEecCCcceeEeeccccCCC-eEEEecCCCceEEEEEeccCC--ceeEEec--CC---------------------Cc
Confidence 4567889999999999999876 689999999999999987532 2222222 21 13
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCC-cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESS-RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
|..+.+-|.|..+++++. ..+++||+.+| +.+..+..|...|+|+++..++..|++|+.|+.+++||+.+-+.+..+
T Consensus 199 Ve~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~- 276 (487)
T KOG0310|consen 199 VESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW- 276 (487)
T ss_pred eeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEee-
Confidence 788999999999998874 67999999965 555555569999999999999999999999999999998888888887
Q ss_pred CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643 241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL 277 (279)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 277 (279)
...++|.+++.+|+++.++.|..+|.+.+
T Consensus 277 --------~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 277 --------KYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred --------ecccceeeEEecCCCceEEEecccceeee
Confidence 45578999999999999999999998754
No 62
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=5.6e-31 Score=184.15 Aligned_cols=238 Identities=16% Similarity=0.131 Sum_probs=188.2
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.|+++++|+++..+...-....+|.+.|-.++|+|. .+++|++++.|.+|++||++. .
T Consensus 40 ~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~---~~d~~atas~dk~ir~wd~r~-------------------~ 97 (313)
T KOG1407|consen 40 FDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPK---HPDLFATASGDKTIRIWDIRS-------------------G 97 (313)
T ss_pred cCCceEEEEecchhhhhhhcccCCCcchhhheeCCC---CCcceEEecCCceEEEEEecc-------------------C
Confidence 378999999888765445567889999999999995 899999999999999999998 5
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCccee------ee----------ccCcccceEEe
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPI------NL----------QGNHVKPVLDL 144 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~------~~----------~~~~~~~~~~~ 144 (279)
++........+.+ -+.|+|+++ +++.++.|..|...|.++.+...... .. .......+.-+
T Consensus 98 k~~~~i~~~~eni-~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~IL 174 (313)
T KOG1407|consen 98 KCTARIETKGENI-NITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEIL 174 (313)
T ss_pred cEEEEeeccCcce-EEEEcCCCC--EEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEE
Confidence 6666655444444 578999998 99999999999999987643211100 00 00111112222
Q ss_pred ecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCe
Q 023643 145 VNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224 (279)
Q Consensus 145 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~ 224 (279)
..+.-........|.....||.|+|+|++|++|+.|..+.+||++..-+++.+..+.-+|+.+.|+-+|++||++|+|..
T Consensus 175 sypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~ 254 (313)
T KOG1407|consen 175 SYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHF 254 (313)
T ss_pred eccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccce
Confidence 22223333344556667889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643 225 ARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT 272 (279)
Q Consensus 225 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 272 (279)
|-|=++++|..+..+ .+.++...++|+|...+||-+..|
T Consensus 255 IDIA~vetGd~~~eI---------~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 255 IDIAEVETGDRVWEI---------PCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred EEeEecccCCeEEEe---------eccCCceeEEecCCCceeeEEecC
Confidence 999999999999998 456788999999999999877654
No 63
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=2.4e-31 Score=198.09 Aligned_cols=220 Identities=21% Similarity=0.268 Sum_probs=187.1
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
|..+.++|.... ..+..+++|...|+.+.|+| +...+++++.|-.|+||.... ..
T Consensus 240 d~~av~~d~~s~--q~l~~~~Gh~kki~~v~~~~----~~~~v~~aSad~~i~vws~~~-------------------~s 294 (506)
T KOG0289|consen 240 DKTAVLFDKPSN--QILATLKGHTKKITSVKFHK----DLDTVITASADEIIRVWSVPL-------------------SS 294 (506)
T ss_pred CCceEEEecchh--hhhhhccCcceEEEEEEecc----chhheeecCCcceEEeecccc-------------------cc
Confidence 456778886666 45889999999999999999 899999999999999999987 44
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
.....+.|+++|+.+..+|.+. ||++++.|++..+.|++++.. ....... ...+ .
T Consensus 295 ~~~~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~---lt~vs~~-~s~v-------------------~ 349 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQ---LTVVSDE-TSDV-------------------E 349 (506)
T ss_pred CccccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcE---EEEEeec-cccc-------------------e
Confidence 5566778999999999999998 999999999999999875422 1111111 1111 2
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
+++.+|+|||..|.+|..|+.++|||+.++..+..|.+|.++|..++|+.+|.+|++++.|+.|++||+|..+..+++..
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l 429 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL 429 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999988888854
Q ss_pred CccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 242 VKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
. ....+.++.|++.|.+|+.++.|=.|+++
T Consensus 430 ~-------~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 430 D-------EKKEVNSLSFDQSGTYLGIAGSDLQVYIC 459 (506)
T ss_pred c-------ccccceeEEEcCCCCeEEeecceeEEEEE
Confidence 2 22378999999999999999888777764
No 64
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9e-32 Score=209.57 Aligned_cols=231 Identities=18% Similarity=0.226 Sum_probs=191.8
Q ss_pred CCceeeeccccccc----cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccccee
Q 023643 2 CGDSTNWDEDAYRK----SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQL 77 (279)
Q Consensus 2 dG~v~iw~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 77 (279)
||.|++|+...... ..+..++.|..-|..++... +++.|++++.|-+|++|+.....
T Consensus 46 Dg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~----~~~tlIS~SsDtTVK~W~~~~~~--------------- 106 (735)
T KOG0308|consen 46 DGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG----NGKTLISASSDTTVKVWNAHKDN--------------- 106 (735)
T ss_pred CceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc----CCCceEEecCCceEEEeecccCc---------------
Confidence 89999999653321 24667889999999999998 89999999999999999998731
Q ss_pred eeccccccccCCccCeEEEEe-cCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643 78 LGIEPDGFLHGHDGPAYDVKF-YGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL 156 (279)
Q Consensus 78 ~~~~~~~~~~~h~~~v~~~~~-~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (279)
.-++.+++.|.+.|.|++. .++.. +++|||-|+.|.+||++.... ....... ..+...+. .
T Consensus 107 --~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~-~l~~s~n---~~t~~sl~----------s 168 (735)
T KOG0308|consen 107 --TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTA-TLVASFN---NVTVNSLG----------S 168 (735)
T ss_pred --chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcch-hhhhhcc---ccccccCC----------C
Confidence 1567888999999999999 66665 999999999999999986533 0000000 00000000 0
Q ss_pred CCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE
Q 023643 157 SPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI 236 (279)
Q Consensus 157 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~ 236 (279)
.+...|++++.++.+..+++|+..+.+++||.++.+.+..+++|...|+++..+++|..++++|.||+|++||+...+++
T Consensus 169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl 248 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCL 248 (735)
T ss_pred CCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccccee
Confidence 22235899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643 237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL 277 (279)
Q Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 277 (279)
.++ ..|...|+++..+|+-.++++|+.||.|..
T Consensus 249 ~T~--------~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~ 281 (735)
T KOG0308|consen 249 ATY--------IVHKEGVWALQSSPSFTHVYSGGRDGNIYR 281 (735)
T ss_pred eeE--------EeccCceEEEeeCCCcceEEecCCCCcEEe
Confidence 998 688888999999999999999999998864
No 65
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=2.6e-31 Score=198.77 Aligned_cols=239 Identities=19% Similarity=0.277 Sum_probs=181.8
Q ss_pred CCceeeeccccccccc--------eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcc
Q 023643 2 CGDSTNWDEDAYRKSI--------LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSK 73 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 73 (279)
.|.|.|||........ -..+.+|..+-++|+|++. ..-.|++++.|++|++||++.......
T Consensus 146 ~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~---~~g~Lls~~~d~~i~lwdi~~~~~~~~------- 215 (422)
T KOG0264|consen 146 SGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQ---QEGTLLSGSDDHTICLWDINAESKEDK------- 215 (422)
T ss_pred CCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccc---cceeEeeccCCCcEEEEeccccccCCc-------
Confidence 5789999965433211 1267899998899999994 677899999999999999986432100
Q ss_pred cceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcc
Q 023643 74 VQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPW 153 (279)
Q Consensus 74 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (279)
...+...+.+|+..|..++|++... .+|++++.|+.+.|||+|.. ..+....... +
T Consensus 216 -----~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~a-h---------------- 271 (422)
T KOG0264|consen 216 -----VVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSN-TSKPSHSVKA-H---------------- 271 (422)
T ss_pred -----cccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCC-CCCCcccccc-c----------------
Confidence 0355677889999999999999876 58999999999999999863 2222222222 2
Q ss_pred ccCCCCCCceeEEEcCC-CCeEEEecCCCeEEEEecCCC-cEEEEeecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeC
Q 023643 154 GALSPVPENNAIAVDPQ-GGAIFSAAGDSCAYCWDVESS-RIKMVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDC 230 (279)
Q Consensus 154 ~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~ 230 (279)
...++|++|+|- +..||+|+.|++|.+||+|+. +++.++.+|...|.++.|+|. ...|++++.|+.+.|||+
T Consensus 272 -----~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDl 346 (422)
T KOG0264|consen 272 -----SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDL 346 (422)
T ss_pred -----CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEec
Confidence 224799999994 457899999999999999984 688899999999999999996 678999999999999999
Q ss_pred CCCceEEEec----CCc--cccccCcceeeeEEEEcCCCCE-EEEEcCcceEEeCC
Q 023643 231 KSGKCIKVID----PVK--DKQLKGVISCVSCITLDASESW-LVRVRATNYVILFS 279 (279)
Q Consensus 231 ~~~~~~~~~~----~~~--~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~wd 279 (279)
..-...+.-. .+. .....||...|..+.|+|+..+ |++.+.|+.+.||.
T Consensus 347 s~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 347 SRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred cccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 6522111100 000 0122689999999999998765 56778999999994
No 66
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.8e-31 Score=181.62 Aligned_cols=201 Identities=18% Similarity=0.241 Sum_probs=176.8
Q ss_pred ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEE
Q 023643 17 ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDV 96 (279)
Q Consensus 17 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 96 (279)
.+..+..+.++|.++.|+- +|++.+++++|.+|++|++.. +..++++.+|...|..+
T Consensus 9 r~~~l~~~qgaV~avryN~----dGnY~ltcGsdrtvrLWNp~r-------------------g~liktYsghG~EVlD~ 65 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNV----DGNYCLTCGSDRTVRLWNPLR-------------------GALIKTYSGHGHEVLDA 65 (307)
T ss_pred hceeecccccceEEEEEcc----CCCEEEEcCCCceEEeecccc-------------------cceeeeecCCCceeeec
Confidence 3556778899999999999 999999999999999999998 78899999999999999
Q ss_pred EecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEE
Q 023643 97 KFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFS 176 (279)
Q Consensus 97 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 176 (279)
+.+.++. .|++|+.|..+.+||++++ +....+.++.. +|+.+.|+.+...+++
T Consensus 66 ~~s~Dns--kf~s~GgDk~v~vwDV~TG---kv~Rr~rgH~a----------------------qVNtV~fNeesSVv~S 118 (307)
T KOG0316|consen 66 ALSSDNS--KFASCGGDKAVQVWDVNTG---KVDRRFRGHLA----------------------QVNTVRFNEESSVVAS 118 (307)
T ss_pred ccccccc--ccccCCCCceEEEEEcccC---eeeeecccccc----------------------eeeEEEecCcceEEEe
Confidence 9999887 9999999999999998764 44555555332 3899999999999999
Q ss_pred ecCCCeEEEEecCC--CcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceee
Q 023643 177 AAGDSCAYCWDVES--SRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCV 254 (279)
Q Consensus 177 ~~~d~~i~i~d~~~--~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v 254 (279)
|+.|.++++||.++ .++++.+......|.++... +..|++||.||+++.||++.|+..... .+ .+|
T Consensus 119 gsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy--------~g--~pi 186 (307)
T KOG0316|consen 119 GSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDY--------FG--HPI 186 (307)
T ss_pred ccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhh--------cC--Ccc
Confidence 99999999999986 47888888888889999876 788999999999999999999876655 23 489
Q ss_pred eEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 255 SCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 255 ~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
++++|+++++..++++.|+++++-|
T Consensus 187 t~vs~s~d~nc~La~~l~stlrLlD 211 (307)
T KOG0316|consen 187 TSVSFSKDGNCSLASSLDSTLRLLD 211 (307)
T ss_pred eeEEecCCCCEEEEeeccceeeecc
Confidence 9999999999999999999999865
No 67
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=1.2e-31 Score=203.88 Aligned_cols=231 Identities=18% Similarity=0.153 Sum_probs=170.9
Q ss_pred eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccc---------------ccccCCccc---------
Q 023643 19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKL---------------PLGLSNSKV--------- 74 (279)
Q Consensus 19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---------------~~~~~~~~~--------- 74 (279)
..+.+|+..|.++++.| .|.+|++|+.|.+|++||+..+.... .+.+++.+.
T Consensus 161 i~l~hgtk~Vsal~~Dp----~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDP----SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred EeccCCceEEEEeeecC----CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 45778899999999999 89999999999999999998654322 112222111
Q ss_pred -ceeee---------------ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcc
Q 023643 75 -QQLLG---------------IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHV 138 (279)
Q Consensus 75 -~~~~~---------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 138 (279)
-.++. ..-+..-++|...+++.+|+|..+ ..|+|++.||++|||++++......++.......
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k-~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK-EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcc-cceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence 00110 233445678999999999999887 5899999999999999987655544444443332
Q ss_pred cceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCc--EE-EEeecCCc--ceEEEEEcCCC
Q 023643 139 KPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSR--IK-MVFKGHSD--YLHCIVARNST 213 (279)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~-~~~~~~~~--~i~~i~~~~~~ 213 (279)
..+ .+++++|+|+++++|+|+.||.|.+|+..+.. +. ..-+.|.. .|+||.|+++|
T Consensus 316 ~Rv-------------------~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg 376 (641)
T KOG0772|consen 316 KRV-------------------PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG 376 (641)
T ss_pred ccc-------------------CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc
Confidence 222 37899999999999999999999999986532 22 23346776 89999999999
Q ss_pred cEEEEecCCCeEEEEeCCCC-ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC------cceEEeCC
Q 023643 214 NQIVTGSEDGTARIWDCKSG-KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA------TNYVILFS 279 (279)
Q Consensus 214 ~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~~wd 279 (279)
++|++-+.|+++++||++.. +++.....- ....+-+.++|||+.++|+||+. .|++.+||
T Consensus 377 ~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL------~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 377 NYLLSRGFDDTLKVWDLRQFKKPLNVRTGL------PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred chhhhccCCCceeeeeccccccchhhhcCC------CccCCCCccccCCCceEEEecccccCCCCCceEEEEe
Confidence 99999999999999999974 444443211 11234578899999999999864 45666664
No 68
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.7e-30 Score=209.22 Aligned_cols=230 Identities=16% Similarity=0.185 Sum_probs=188.3
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
|=.|++|+.+.. .++.++.+|-+-|..+.|++ .-.+++++|.|-+|+||+..+ .+
T Consensus 72 DykIkVWnYk~r--rclftL~GHlDYVRt~~FHh----eyPWIlSASDDQTIrIWNwqs-------------------r~ 126 (1202)
T KOG0292|consen 72 DYKIKVWNYKTR--RCLFTLLGHLDYVRTVFFHH----EYPWILSASDDQTIRIWNWQS-------------------RK 126 (1202)
T ss_pred ccEEEEEecccc--eehhhhccccceeEEeeccC----CCceEEEccCCCeEEEEeccC-------------------Cc
Confidence 457999998887 55889999999999999999 789999999999999999999 78
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceee-----eccCc--------ccceEEeecCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPIN-----LQGNH--------VKPVLDLVNHQ 148 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-----~~~~~--------~~~~~~~~~~~ 148 (279)
++..+.||...|.|..|+|... +++|+|-|.+||+||+.-.+....... +.+.+ ...+.....
T Consensus 127 ~iavltGHnHYVMcAqFhptED--lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL-- 202 (1202)
T KOG0292|consen 127 CIAVLTGHNHYVMCAQFHPTED--LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL-- 202 (1202)
T ss_pred eEEEEecCceEEEeeccCCccc--eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee--
Confidence 8999999999999999999887 999999999999999864322111111 11111 011222222
Q ss_pred CCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCc--EEEEeecCCcceEEEEEcCCCcEEEEecCCCeEE
Q 023643 149 HKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSR--IKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTAR 226 (279)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~ 226 (279)
..|...|+-++|+|.-.++++|+.|..|++|....-+ .+-+.++|.+.|.++-|+|..+++++.|+|++|+
T Consensus 203 -------EGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksir 275 (1202)
T KOG0292|consen 203 -------EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIR 275 (1202)
T ss_pred -------cccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEE
Confidence 2334468999999999999999999999999986543 4557789999999999999999999999999999
Q ss_pred EEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceE
Q 023643 227 IWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYV 275 (279)
Q Consensus 227 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 275 (279)
|||+...+.++++ +......+.++-+|..+++|+|-..|.+
T Consensus 276 VwDm~kRt~v~tf--------rrendRFW~laahP~lNLfAAgHDsGm~ 316 (1202)
T KOG0292|consen 276 VWDMTKRTSVQTF--------RRENDRFWILAAHPELNLFAAGHDSGMI 316 (1202)
T ss_pred EEecccccceeee--------eccCCeEEEEEecCCcceeeeecCCceE
Confidence 9999999999998 4455678899999999988888766654
No 69
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.98 E-value=8.6e-31 Score=210.82 Aligned_cols=212 Identities=23% Similarity=0.340 Sum_probs=182.1
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
|+++++|+..... .+...+.+|.+.|+++++.. .+.+|++|+.|.++++||..+ +.
T Consensus 227 ~~tl~~~~~~~~~-~i~~~l~GH~g~V~~l~~~~----~~~~lvsgS~D~t~rvWd~~s-------------------g~ 282 (537)
T KOG0274|consen 227 DSTLHLWDLNNGY-LILTRLVGHFGGVWGLAFPS----GGDKLVSGSTDKTERVWDCST-------------------GE 282 (537)
T ss_pred CceeEEeecccce-EEEeeccCCCCCceeEEEec----CCCEEEEEecCCcEEeEecCC-------------------Cc
Confidence 6788999977664 33444999999999999997 689999999999999999998 78
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
+...+.+|...|.++...+. ++++|+.|.+|++|++.+ ......+.+ +.. +
T Consensus 283 C~~~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n---~~~l~l~~~-h~~---------------------~ 333 (537)
T KOG0274|consen 283 CTHSLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTN---GACLNLLRG-HTG---------------------P 333 (537)
T ss_pred EEEEecCCCceEEEEEccCc----eEeeccCCceEEEEeccC---cceEEEecc-ccc---------------------c
Confidence 89999999999999988765 789999999999999863 233333333 333 3
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC-ceEEEec
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG-KCIKVID 240 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~ 240 (279)
|+++..+ +.++++|+.|++|++||+.+++++.++.+|..+|+++.+.+. ..+++|+.|++|++||+++. +++.++
T Consensus 334 V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl- 409 (537)
T KOG0274|consen 334 VNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL- 409 (537)
T ss_pred EEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh-
Confidence 6888887 779999999999999999999999999999999999988755 89999999999999999999 899888
Q ss_pred CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+|..-+..+.+ .+++|++++.|++|++||
T Consensus 410 -------~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD 439 (537)
T KOG0274|consen 410 -------QGHTSLVSSLLL--RDNFLVSSSADGTIKLWD 439 (537)
T ss_pred -------cCCccccccccc--ccceeEeccccccEEEee
Confidence 688877866555 578999999999999997
No 70
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=9.1e-32 Score=194.19 Aligned_cols=207 Identities=21% Similarity=0.330 Sum_probs=173.3
Q ss_pred cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643 24 LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE 103 (279)
Q Consensus 24 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 103 (279)
...-+.|..|+| |+++|++|+.||-|.+|+..+++....+. .+....+.-+..+|.|++|+.+..
T Consensus 212 ~KSh~EcA~FSP----DgqyLvsgSvDGFiEVWny~~GKlrKDLk-----------YQAqd~fMMmd~aVlci~FSRDsE 276 (508)
T KOG0275|consen 212 QKSHVECARFSP----DGQYLVSGSVDGFIEVWNYTTGKLRKDLK-----------YQAQDNFMMMDDAVLCISFSRDSE 276 (508)
T ss_pred cccchhheeeCC----CCceEeeccccceeeeehhccchhhhhhh-----------hhhhcceeecccceEEEeecccHH
Confidence 456688999999 99999999999999999999865443322 222334555789999999999998
Q ss_pred ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeE
Q 023643 104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCA 183 (279)
Q Consensus 104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 183 (279)
++++|+.||.|++|.++++ .+...+...|.+ .|+|+.|+.|+..+++++.|.++
T Consensus 277 --MlAsGsqDGkIKvWri~tG---~ClRrFdrAHtk---------------------Gvt~l~FSrD~SqiLS~sfD~tv 330 (508)
T KOG0275|consen 277 --MLASGSQDGKIKVWRIETG---QCLRRFDRAHTK---------------------GVTCLSFSRDNSQILSASFDQTV 330 (508)
T ss_pred --HhhccCcCCcEEEEEEecc---hHHHHhhhhhcc---------------------CeeEEEEccCcchhhcccccceE
Confidence 9999999999999998754 555555544433 37999999999999999999999
Q ss_pred EEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCC-
Q 023643 184 YCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS- 262 (279)
Q Consensus 184 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 262 (279)
++.-+.+|+++.+|++|.+.|+...|.++|.++++++.||+|++|+.++++++.++.+ .+...+|..+..-|.
T Consensus 331 RiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~------~~~d~~vnsv~~~PKn 404 (508)
T KOG0275|consen 331 RIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP------LGTDYPVNSVILLPKN 404 (508)
T ss_pred EEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC------CCCcccceeEEEcCCC
Confidence 9999999999999999999999999999999999999999999999999999999976 355667888887774
Q ss_pred CCEEEEEcCcceEEe
Q 023643 263 ESWLVRVRATNYVIL 277 (279)
Q Consensus 263 ~~~l~~~~~d~~i~~ 277 (279)
...++.+...+++.+
T Consensus 405 peh~iVCNrsntv~i 419 (508)
T KOG0275|consen 405 PEHFIVCNRSNTVYI 419 (508)
T ss_pred CceEEEEcCCCeEEE
Confidence 456777776666654
No 71
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.5e-29 Score=180.41 Aligned_cols=223 Identities=13% Similarity=0.105 Sum_probs=174.2
Q ss_pred eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCC-------------------ccc-----
Q 023643 19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSN-------------------SKV----- 74 (279)
Q Consensus 19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-------------------~~~----- 74 (279)
+.+..-...|.++.|++ +|.+|++++.|.+|+|||..++.....+.... .+.
T Consensus 8 k~f~~~~~~i~sl~fs~----~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSD----DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred cccccCCCceeEEEecC----CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 34444568899999999 99999999999999999999877655222111 011
Q ss_pred -ceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcc
Q 023643 75 -QQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPW 153 (279)
Q Consensus 75 -~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (279)
..+.+.+.++.+.||...|++|+.+|-+. .+++++.|++|++||++.. ..+-.....+
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~-~cqg~l~~~~------------------ 142 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVK-KCQGLLNLSG------------------ 142 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCC-CCceEEecCC------------------
Confidence 11222677889999999999999999997 9999999999999999843 2222222222
Q ss_pred ccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCC--cEEEEeec---CCcceEEEEEcCCCcEEEEecCCCeEEEE
Q 023643 154 GALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS--RIKMVFKG---HSDYLHCIVARNSTNQIVTGSEDGTARIW 228 (279)
Q Consensus 154 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~d~~i~vw 228 (279)
-..++|+|+|-.+|++.....|++||+++- .+..+|.- .......|.|+|+|++|+.+...+.+++.
T Consensus 143 --------~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~l 214 (311)
T KOG1446|consen 143 --------RPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLL 214 (311)
T ss_pred --------CcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEE
Confidence 146799999999999998889999999863 45555543 35678999999999999999999999999
Q ss_pred eCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 229 DCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 229 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
|.-+|..+..+..+. .....+ -..+|.||++++++|+.||+|.+|+
T Consensus 215 DAf~G~~~~tfs~~~----~~~~~~-~~a~ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 215 DAFDGTVKSTFSGYP----NAGNLP-LSATFTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred EccCCcEeeeEeecc----CCCCcc-eeEEECCCCcEEEEecCCCcEEEEE
Confidence 999999888886543 111122 4677999999999999999999995
No 72
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=4.8e-30 Score=203.10 Aligned_cols=228 Identities=17% Similarity=0.293 Sum_probs=191.7
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
.+.+++|+.++. ++++++. .+-+.+..|.| .++++++|...|.+.+||+.+ ..
T Consensus 393 ~~SikiWn~~t~--kciRTi~--~~y~l~~~Fvp----gd~~Iv~G~k~Gel~vfdlaS-------------------~~ 445 (888)
T KOG0306|consen 393 GESIKIWNRDTL--KCIRTIT--CGYILASKFVP----GDRYIVLGTKNGELQVFDLAS-------------------AS 445 (888)
T ss_pred CCcEEEEEccCc--ceeEEec--cccEEEEEecC----CCceEEEeccCCceEEEEeeh-------------------hh
Confidence 478999998876 4465554 34888999999 899999999999999999998 67
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
.+.+.+.|.+.+.+++.+|++. .+++||.|.+|++||..-... ..+ ....+..+... ....-...
T Consensus 446 l~Eti~AHdgaIWsi~~~pD~~--g~vT~saDktVkfWdf~l~~~------~~g-t~~k~lsl~~~------rtLel~dd 510 (888)
T KOG0306|consen 446 LVETIRAHDGAIWSISLSPDNK--GFVTGSADKTVKFWDFKLVVS------VPG-TQKKVLSLKHT------RTLELEDD 510 (888)
T ss_pred hhhhhhccccceeeeeecCCCC--ceEEecCCcEEEEEeEEEEec------cCc-ccceeeeeccc------eEEecccc
Confidence 7778889999999999999998 999999999999999743211 001 00011111000 00111224
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
|.|+++|||+++|+++--|.++++|-+++-+..-++.+|.-||.||..+||++.++|||.|.+|+||-+.-|.|-+.+
T Consensus 511 vL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~-- 588 (888)
T KOG0306|consen 511 VLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF-- 588 (888)
T ss_pred EEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh--
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 242 VKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
-+|...|.++.|.|....+.+++.|+.|+-||
T Consensus 589 ------fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 589 ------FAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWD 620 (888)
T ss_pred ------hcccCceeEEEEcccceeEEEecCcceEEeec
Confidence 79999999999999999999999999999997
No 73
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=3.1e-30 Score=180.47 Aligned_cols=229 Identities=14% Similarity=0.184 Sum_probs=180.2
Q ss_pred eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643 19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF 98 (279)
Q Consensus 19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 98 (279)
+...+|...|.+++|+. +|..|++|+.|+++.+|++.... .......++|.+.|-.++|
T Consensus 14 r~~~~~~~~v~Sv~wn~----~g~~lasgs~dktv~v~n~e~~r-----------------~~~~~~~~gh~~svdql~w 72 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNC----DGTKLASGSFDKTVSVWNLERDR-----------------FRKELVYRGHTDSVDQLCW 72 (313)
T ss_pred HHhhhhhhcceEEEEcc----cCceeeecccCCceEEEEecchh-----------------hhhhhcccCCCcchhhhee
Confidence 46678999999999999 99999999999999999998742 2223456789999999999
Q ss_pred cCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccC----------cc-----cceEEeecCCCCCccccCCCCCCce
Q 023643 99 YGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGN----------HV-----KPVLDLVNHQHKGPWGALSPVPENN 163 (279)
Q Consensus 99 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~----------~~-----~~~~~~~~~~~~~~~~~~~~~~~i~ 163 (279)
.|..+ ..|++++.|.+|++||++..+....+..-.++ .. .....+.................+.
T Consensus 73 ~~~~~-d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~n 151 (313)
T KOG1407|consen 73 DPKHP-DLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVN 151 (313)
T ss_pred CCCCC-cceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceee
Confidence 99876 59999999999999999865432221111110 00 0011111112222222333344678
Q ss_pred eEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCc
Q 023643 164 AIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVK 243 (279)
Q Consensus 164 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 243 (279)
-++|+-++.+++.....|+|.|.....-+++..++.|.....||.|+|+|+++|+|+.|..+.+||+...-+++.+
T Consensus 152 e~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i---- 227 (313)
T KOG1407|consen 152 EISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI---- 227 (313)
T ss_pred eeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee----
Confidence 8899987787777777899999999999999999999999999999999999999999999999999999899988
Q ss_pred cccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643 244 DKQLKGVISCVSCITLDASESWLVRVRATNYVIL 277 (279)
Q Consensus 244 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 277 (279)
..+.-+|..+.|+.||++||+||+|..|-|
T Consensus 228 ----sRldwpVRTlSFS~dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 228 ----SRLDWPVRTLSFSHDGRMLASASEDHFIDI 257 (313)
T ss_pred ----ccccCceEEEEeccCcceeeccCccceEEe
Confidence 678889999999999999999999987754
No 74
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.3e-30 Score=203.99 Aligned_cols=230 Identities=17% Similarity=0.263 Sum_probs=193.2
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
.|.+.+||+... ..+.+.+.|.+.|+.++.+| |+..+++|+.|.+|++||+.-... .+......+...
T Consensus 433 ~Gel~vfdlaS~--~l~Eti~AHdgaIWsi~~~p----D~~g~vT~saDktVkfWdf~l~~~------~~gt~~k~lsl~ 500 (888)
T KOG0306|consen 433 NGELQVFDLASA--SLVETIRAHDGAIWSISLSP----DNKGFVTGSADKTVKFWDFKLVVS------VPGTQKKVLSLK 500 (888)
T ss_pred CCceEEEEeehh--hhhhhhhccccceeeeeecC----CCCceEEecCCcEEEEEeEEEEec------cCcccceeeeec
Confidence 478888987776 34667779999999999999 999999999999999999864221 111111111122
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
..+++. -+..|.|++++|+++ +|+.+=-|.++++|-+++. +....+.||.. +
T Consensus 501 ~~rtLe-l~ddvL~v~~Spdgk--~LaVsLLdnTVkVyflDtl---KFflsLYGHkL----------------------P 552 (888)
T KOG0306|consen 501 HTRTLE-LEDDVLCVSVSPDGK--LLAVSLLDNTVKVYFLDTL---KFFLSLYGHKL----------------------P 552 (888)
T ss_pred cceEEe-ccccEEEEEEcCCCc--EEEEEeccCeEEEEEecce---eeeeeeccccc----------------------c
Confidence 222332 456799999999998 9999999999999998753 45555555433 3
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
|.|+.++||+++++||+.|.+|++|-++-|.+-.++-+|...|.++.|-|....+.+++.|+.|+-||-..-+.++.+
T Consensus 553 V~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L-- 630 (888)
T KOG0306|consen 553 VLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL-- 630 (888)
T ss_pred eeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheee--
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 242 VKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+|...|+|++.+|+|.+++++|.|.+|++|.
T Consensus 631 ------~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 631 ------DGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred ------ccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 79999999999999999999999999999994
No 75
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.5e-30 Score=193.81 Aligned_cols=215 Identities=16% Similarity=0.240 Sum_probs=176.0
Q ss_pred eeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccc
Q 023643 5 STNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDG 84 (279)
Q Consensus 5 v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (279)
+.||+..+.. ..+.+.-....|+++.|.. ||.+||+|...|.|+|||+.+ ...++
T Consensus 50 vqly~~~~~~--~~k~~srFk~~v~s~~fR~----DG~LlaaGD~sG~V~vfD~k~-------------------r~iLR 104 (487)
T KOG0310|consen 50 VQLYSSVTRS--VRKTFSRFKDVVYSVDFRS----DGRLLAAGDESGHVKVFDMKS-------------------RVILR 104 (487)
T ss_pred EEEEecchhh--hhhhHHhhccceeEEEeec----CCeEEEccCCcCcEEEecccc-------------------HHHHH
Confidence 5566655543 2444555668899999999 999999999999999999766 56778
Q ss_pred cccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCcee
Q 023643 85 FLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNA 164 (279)
Q Consensus 85 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 164 (279)
.+.+|+.+|..+.|+|.++ ..|++|+.|+.+++||+.+.. ....+.++ ...|+|
T Consensus 105 ~~~ah~apv~~~~f~~~d~-t~l~s~sDd~v~k~~d~s~a~---v~~~l~~h----------------------tDYVR~ 158 (487)
T KOG0310|consen 105 QLYAHQAPVHVTKFSPQDN-TMLVSGSDDKVVKYWDLSTAY---VQAELSGH----------------------TDYVRC 158 (487)
T ss_pred HHhhccCceeEEEecccCC-eEEEecCCCceEEEEEcCCcE---EEEEecCC----------------------cceeEe
Confidence 8999999999999999877 689999999999999987542 22233332 224899
Q ss_pred EEEcCCCC-eEEEecCCCeEEEEecCCC-cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCC
Q 023643 165 IAVDPQGG-AIFSAAGDSCAYCWDVESS-RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPV 242 (279)
Q Consensus 165 ~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~ 242 (279)
.+|+|... .+++|+.||.|++||+++. ..+.++. |..+|..+.+-|.|..|++++ ...|+|||+-+|..+....
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~-- 234 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSM-- 234 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhh--
Confidence 99999655 8899999999999999987 6667775 999999999999999999987 4569999998665443331
Q ss_pred ccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 243 KDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 243 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
..|...|+|+++..++..|++|+-|+.|++||
T Consensus 235 -----~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd 266 (487)
T KOG0310|consen 235 -----FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFD 266 (487)
T ss_pred -----hcccceEEEEEeecCCceEeecccccceEEEE
Confidence 45889999999999999999999999999986
No 76
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.4e-29 Score=207.67 Aligned_cols=239 Identities=18% Similarity=0.227 Sum_probs=182.6
Q ss_pred CCCceeeeccccc----------cccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccC
Q 023643 1 MCGDSTNWDEDAY----------RKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLS 70 (279)
Q Consensus 1 ~dG~v~iw~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 70 (279)
+||.++||+.+.- ....+.+...|.+.|.|+.|+| ||.+||+|+.|+.|.||..... .......+
T Consensus 35 ~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~----dG~~lAsGSDD~~v~iW~~~~~-~~~~~fgs 109 (942)
T KOG0973|consen 35 LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP----DGSYLASGSDDRLVMIWERAEI-GSGTVFGS 109 (942)
T ss_pred ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC----CCCeEeeccCcceEEEeeeccc-CCcccccc
Confidence 4788889985421 1234556778999999999999 9999999999999999998852 11111111
Q ss_pred CcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCC
Q 023643 71 NSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHK 150 (279)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (279)
..+....-..+....+++|...|..++|+|++. +|++++.|++|.+|+.++. .....+.+|+..
T Consensus 110 ~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF---~~~~vl~~H~s~----------- 173 (942)
T KOG0973|consen 110 TGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF---ELLKVLRGHQSL----------- 173 (942)
T ss_pred cccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc---eeeeeeeccccc-----------
Confidence 111111112567788999999999999999998 9999999999999997665 444445544332
Q ss_pred CccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcE-------------------------------------
Q 023643 151 GPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRI------------------------------------- 193 (279)
Q Consensus 151 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~------------------------------------- 193 (279)
|-.+.|+|-|++|++-+.|++|++|++.+...
T Consensus 174 -----------VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~ 242 (942)
T KOG0973|consen 174 -----------VKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNG 242 (942)
T ss_pred -----------ccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccC
Confidence 67888999999999999999999998653211
Q ss_pred ---------------EEEeecCCcceEEEEEcCC-----Cc------------EEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 194 ---------------KMVFKGHSDYLHCIVARNS-----TN------------QIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 194 ---------------~~~~~~~~~~i~~i~~~~~-----~~------------~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
-..|-+|.+++.+++|+|. .+ .+|+|+.|++|.||.....+++..+.
T Consensus 243 ~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~- 321 (942)
T KOG0973|consen 243 GKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH- 321 (942)
T ss_pred CcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh-
Confidence 1124589999999999872 12 67899999999999987777777663
Q ss_pred CccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 242 VKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
.-....|..++|+|||..|+++|.||+|.++
T Consensus 322 ------~lf~~SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 322 ------NLFNKSIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred ------hhhcCceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 3455689999999999999999999999874
No 77
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=5.1e-30 Score=191.89 Aligned_cols=219 Identities=22% Similarity=0.299 Sum_probs=172.5
Q ss_pred eecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCC
Q 023643 22 EILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGG 101 (279)
Q Consensus 22 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 101 (279)
-.|.++|+.+.+-|. +...+|+++..+.|.|||..+......... ..++-..+.+|++.-++|+|++.
T Consensus 121 i~h~gEVnRaRymPQ---np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~---------~~~Pdl~L~gH~~eg~glsWn~~ 188 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQ---NPNIVATKTSSGDVYVFDYTKHPSKPKASG---------ECRPDLRLKGHEKEGYGLSWNRQ 188 (422)
T ss_pred ccCCccchhhhhCCC---CCcEEEecCCCCCEEEEEeccCCCcccccc---------cCCCceEEEeecccccccccccc
Confidence 358999999999994 888999999999999999987543322110 03555678899998899999998
Q ss_pred CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC-CeEEEecCC
Q 023643 102 NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG-GAIFSAAGD 180 (279)
Q Consensus 102 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d 180 (279)
.. -.|++++.|++|++||++........ ..+...+ ..+...|..++|++.. .+|++++.|
T Consensus 189 ~~-g~Lls~~~d~~i~lwdi~~~~~~~~~-------~~p~~~~-----------~~h~~~VeDV~~h~~h~~lF~sv~dd 249 (422)
T KOG0264|consen 189 QE-GTLLSGSDDHTICLWDINAESKEDKV-------VDPKTIF-----------SGHEDVVEDVAWHPLHEDLFGSVGDD 249 (422)
T ss_pred cc-eeEeeccCCCcEEEEeccccccCCcc-------ccceEEe-----------ecCCcceehhhccccchhhheeecCC
Confidence 77 48999999999999999754332000 0010000 0112247899999844 578889999
Q ss_pred CeEEEEecC--CCcEEEEeecCCcceEEEEEcC-CCcEEEEecCCCeEEEEeCCCC-ceEEEecCCccccccCcceeeeE
Q 023643 181 SCAYCWDVE--SSRIKMVFKGHSDYLHCIVARN-STNQIVTGSEDGTARIWDCKSG-KCIKVIDPVKDKQLKGVISCVSC 256 (279)
Q Consensus 181 ~~i~i~d~~--~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~ 256 (279)
+.+.|||+| +.++....++|.+.|.|++|+| ++..||+||.|++|++||+|+. +++.++ .+|...|.+
T Consensus 250 ~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~--------e~H~dev~~ 321 (422)
T KOG0264|consen 250 GKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTF--------EGHEDEVFQ 321 (422)
T ss_pred CeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceec--------cCCCcceEE
Confidence 999999999 5667778889999999999999 5778999999999999999985 455666 799999999
Q ss_pred EEEcCC-CCEEEEEcCcceEEeCC
Q 023643 257 ITLDAS-ESWLVRVRATNYVILFS 279 (279)
Q Consensus 257 ~~~~~~-~~~l~~~~~d~~i~~wd 279 (279)
+.|+|+ ...||+++.|+.+.+||
T Consensus 322 V~WSPh~etvLASSg~D~rl~vWD 345 (422)
T KOG0264|consen 322 VEWSPHNETVLASSGTDRRLNVWD 345 (422)
T ss_pred EEeCCCCCceeEecccCCcEEEEe
Confidence 999996 56888999999999997
No 78
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.5e-29 Score=178.58 Aligned_cols=235 Identities=14% Similarity=0.183 Sum_probs=176.6
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
||+||+|+++......-+....|.++|.+++|+. +|..+++|+.|+.+++||+.+ +
T Consensus 49 D~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd----dgskVf~g~~Dk~~k~wDL~S-------------------~- 104 (347)
T KOG0647|consen 49 DGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD----DGSKVFSGGCDKQAKLWDLAS-------------------G- 104 (347)
T ss_pred CCceEEEEEecCCcccchhhhccCCCeEEEEEcc----CCceEEeeccCCceEEEEccC-------------------C-
Confidence 8999999988742223356667899999999999 999999999999999999998 3
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeee-----------------ccCcccceEEe
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINL-----------------QGNHVKPVLDL 144 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-----------------~~~~~~~~~~~ 144 (279)
....+..|.++|..+.|.+......|+|||.|.+|+.||++..... ....+ ..+....++.+
T Consensus 105 Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv-~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL 183 (347)
T KOG0647|consen 105 QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPV-ATLQLPERVYAADVLYPMAVVATAERHIAVYNL 183 (347)
T ss_pred CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCee-eeeeccceeeehhccCceeEEEecCCcEEEEEc
Confidence 3456677999999999998665458999999999999999853211 11111 01111122222
Q ss_pred ecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCC--cEEEEeecCCc---------ceEEEEEcCCC
Q 023643 145 VNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS--RIKMVFKGHSD---------YLHCIVARNST 213 (279)
Q Consensus 145 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~---------~i~~i~~~~~~ 213 (279)
.++.....-....-.-.++|++..++....+.|+-+|.+-+..+..+ +.-..|+.|.. .|.+|+|+|..
T Consensus 184 ~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h 263 (347)
T KOG0647|consen 184 ENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH 263 (347)
T ss_pred CCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeeccc
Confidence 22211111111112236899999999888899999999999998876 44456777762 57789999999
Q ss_pred cEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEE
Q 023643 214 NQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV 269 (279)
Q Consensus 214 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 269 (279)
..|++++.||++.+||-.....+... ..|..+|++.+|+.+|.++|-+
T Consensus 264 gtlvTaGsDGtf~FWDkdar~kLk~s--------~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 264 GTLVTAGSDGTFSFWDKDARTKLKTS--------ETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ceEEEecCCceEEEecchhhhhhhcc--------CcCCCccceeEecCCCCEEEEE
Confidence 99999999999999998877777776 6788899999999999998865
No 79
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.5e-28 Score=197.61 Aligned_cols=217 Identities=18% Similarity=0.262 Sum_probs=160.2
Q ss_pred ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecC-CCC
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYG-GNE 103 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~ 103 (279)
-..|.....++ ++..+++++.+.....|+...+.... ..... +.. ......+.+|.++|.+++|+| ++.
T Consensus 20 ~~~i~~~~~~~----d~~~~~~~n~~~~a~~w~~~gg~~v~--~~~~~--G~~--~~~~~~l~GH~~~V~~v~fsP~d~~ 89 (493)
T PTZ00421 20 FLNVTPSTALW----DCSNTIACNDRFIAVPWQQLGSTAVL--KHTDY--GKL--ASNPPILLGQEGPIIDVAFNPFDPQ 89 (493)
T ss_pred eeccccccccC----CCCCcEeECCceEEEEEecCCceEEe--ecccc--ccC--CCCCceEeCCCCCEEEEEEcCCCCC
Confidence 34566666777 66777888888888888876542111 11100 000 111234778999999999999 666
Q ss_pred ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC-CeEEEecCCCe
Q 023643 104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG-GAIFSAAGDSC 182 (279)
Q Consensus 104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~ 182 (279)
+|++++.|++|++||+........ ...++..+ ..+...|.+++|+|++ ++|++++.|+.
T Consensus 90 --~LaSgS~DgtIkIWdi~~~~~~~~-------~~~~l~~L-----------~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 90 --KLFTASEDGTIMGWGIPEEGLTQN-------ISDPIVHL-----------QGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred --EEEEEeCCCEEEEEecCCCccccc-------cCcceEEe-----------cCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 999999999999999864311100 00111111 1122348999999975 68999999999
Q ss_pred EEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCccee-eeEEEEcC
Q 023643 183 AYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISC-VSCITLDA 261 (279)
Q Consensus 183 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~ 261 (279)
|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||+++++.+..+ .+|... +..+.|.+
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl--------~~H~~~~~~~~~w~~ 221 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSV--------EAHASAKSQRCLWAK 221 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEE--------ecCCCCcceEEEEcC
Confidence 999999999999999999999999999999999999999999999999999988887 455443 45677899
Q ss_pred CCCEEEEEc----CcceEEeCC
Q 023643 262 SESWLVRVR----ATNYVILFS 279 (279)
Q Consensus 262 ~~~~l~~~~----~d~~i~~wd 279 (279)
++..+++++ .|+.|++||
T Consensus 222 ~~~~ivt~G~s~s~Dr~VklWD 243 (493)
T PTZ00421 222 RKDLIITLGCSKSQQRQIMLWD 243 (493)
T ss_pred CCCeEEEEecCCCCCCeEEEEe
Confidence 887777654 479999997
No 80
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.5e-29 Score=179.60 Aligned_cols=216 Identities=15% Similarity=0.208 Sum_probs=176.9
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
|-+|+|||+.... .+..+-.|.+.|+++.|.+..+ .+.|++|+.||.|.+|+... ..
T Consensus 62 DetI~IYDm~k~~--qlg~ll~HagsitaL~F~~~~S--~shLlS~sdDG~i~iw~~~~-------------------W~ 118 (362)
T KOG0294|consen 62 DETIHIYDMRKRK--QLGILLSHAGSITALKFYPPLS--KSHLLSGSDDGHIIIWRVGS-------------------WE 118 (362)
T ss_pred CCcEEEEeccchh--hhcceeccccceEEEEecCCcc--hhheeeecCCCcEEEEEcCC-------------------eE
Confidence 7799999988764 3667778999999999998321 23899999999999999998 78
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
.+..+++|.+.|+.++.+|.++ +.++.+.|+.+++||+-.++... ...+.. .
T Consensus 119 ~~~slK~H~~~Vt~lsiHPS~K--LALsVg~D~~lr~WNLV~Gr~a~-v~~L~~-------------------------~ 170 (362)
T KOG0294|consen 119 LLKSLKAHKGQVTDLSIHPSGK--LALSVGGDQVLRTWNLVRGRVAF-VLNLKN-------------------------K 170 (362)
T ss_pred EeeeecccccccceeEecCCCc--eEEEEcCCceeeeehhhcCccce-eeccCC-------------------------c
Confidence 8899999999999999999998 99999999999999986542221 111111 0
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
.+.+.|+|.|.+++.+.. ..|-+|.+.+......+. ....+.|+.|- ++..|++|..|+.|++||..+..+...+
T Consensus 171 at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~-- 245 (362)
T KOG0294|consen 171 ATLVSWSPQGDHFVVSGR-NKIDIYQLDNASVFREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEF-- 245 (362)
T ss_pred ceeeEEcCCCCEEEEEec-cEEEEEecccHhHhhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCCccceee--
Confidence 256899999998888775 568999998877666554 33556677664 6789999999999999999998888888
Q ss_pred CccccccCcceeeeEEEE--cCCCCEEEEEcCcceEEeCC
Q 023643 242 VKDKQLKGVISCVSCITL--DASESWLVRVRATNYVILFS 279 (279)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~~wd 279 (279)
.+|...|..+.+ .|++.+|+|+|.||.|++||
T Consensus 246 ------~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 246 ------LAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred ------ecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 789999999984 46789999999999999997
No 81
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.1e-29 Score=201.71 Aligned_cols=204 Identities=15% Similarity=0.197 Sum_probs=165.0
Q ss_pred eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643 18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK 97 (279)
Q Consensus 18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 97 (279)
+..+.+|.+.|..|.|+. .++|++++.|.+||+|++.. .+++..|. |.+.|+|++
T Consensus 362 ~~ef~GHt~DILDlSWSK-----n~fLLSSSMDKTVRLWh~~~-------------------~~CL~~F~-HndfVTcVa 416 (712)
T KOG0283|consen 362 FCEFKGHTADILDLSWSK-----NNFLLSSSMDKTVRLWHPGR-------------------KECLKVFS-HNDFVTCVA 416 (712)
T ss_pred hhhhhccchhheeccccc-----CCeeEeccccccEEeecCCC-------------------cceeeEEe-cCCeeEEEE
Confidence 556789999999999998 58899999999999999998 56777776 999999999
Q ss_pred ecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe
Q 023643 98 FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA 177 (279)
Q Consensus 98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 177 (279)
|+|... ++|++|+-||.||||++.+. +...-..-+ . -|++++|.|+|+..++|
T Consensus 417 FnPvDD-ryFiSGSLD~KvRiWsI~d~---~Vv~W~Dl~---~--------------------lITAvcy~PdGk~avIG 469 (712)
T KOG0283|consen 417 FNPVDD-RYFISGSLDGKVRLWSISDK---KVVDWNDLR---D--------------------LITAVCYSPDGKGAVIG 469 (712)
T ss_pred ecccCC-CcEeecccccceEEeecCcC---eeEeehhhh---h--------------------hheeEEeccCCceEEEE
Confidence 999766 59999999999999998542 111111111 1 28999999999999999
Q ss_pred cCCCeEEEEecCCCcEEEEeec--C------CcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCceEEEecCCcccccc
Q 023643 178 AGDSCAYCWDVESSRIKMVFKG--H------SDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLK 248 (279)
Q Consensus 178 ~~d~~i~i~d~~~~~~~~~~~~--~------~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 248 (279)
+.+|.+++|++...+....+.- | ...|+.+.|.|. ...+++.+.|..|||||++..+++..+.+.. .
T Consensus 470 t~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~----n 545 (712)
T KOG0283|consen 470 TFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR----N 545 (712)
T ss_pred EeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc----c
Confidence 9999999999987776655431 1 227999999984 4567778899999999999988888885432 1
Q ss_pred CcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 249 GVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 249 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
. ..-....|+.||++|+++++|..|++|+
T Consensus 546 ~--~SQ~~Asfs~Dgk~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 546 T--SSQISASFSSDGKHIVSASEDSWVYIWK 574 (712)
T ss_pred C--CcceeeeEccCCCEEEEeecCceEEEEe
Confidence 1 1234567999999999999999999995
No 82
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1.3e-28 Score=179.78 Aligned_cols=204 Identities=21% Similarity=0.298 Sum_probs=175.0
Q ss_pred ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEE
Q 023643 17 ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDV 96 (279)
Q Consensus 17 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 96 (279)
.+..+..|+..|.+++.+| +.+++|||+.|..-.+|++.+ ++....+.+|...|+++
T Consensus 56 S~~tF~~H~~svFavsl~P----~~~l~aTGGgDD~AflW~~~~-------------------ge~~~eltgHKDSVt~~ 112 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHP----NNNLVATGGGDDLAFLWDIST-------------------GEFAGELTGHKDSVTCC 112 (399)
T ss_pred ceeehhhcCCceEEEEeCC----CCceEEecCCCceEEEEEccC-------------------CcceeEecCCCCceEEE
Confidence 4567889999999999999 899999999999999999998 56677888999999999
Q ss_pred EecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEE
Q 023643 97 KFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFS 176 (279)
Q Consensus 97 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 176 (279)
.|+.++. +|+||+.+|.|+||+..++... ..+.. . ...+.=+.|+|.+..|+.
T Consensus 113 ~Fshdgt--lLATGdmsG~v~v~~~stg~~~---~~~~~-e---------------------~~dieWl~WHp~a~illA 165 (399)
T KOG0296|consen 113 SFSHDGT--LLATGDMSGKVLVFKVSTGGEQ---WKLDQ-E---------------------VEDIEWLKWHPRAHILLA 165 (399)
T ss_pred EEccCce--EEEecCCCccEEEEEcccCceE---EEeec-c---------------------cCceEEEEecccccEEEe
Confidence 9999998 9999999999999997654221 11111 0 012577899999999999
Q ss_pred ecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeE
Q 023643 177 AAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSC 256 (279)
Q Consensus 177 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 256 (279)
|+.||.+-+|.+.++...+.+.+|..++++=.|.|+|+.++++..||+|++|++.+++++..+... .....++
T Consensus 166 G~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~-------e~~~~~~ 238 (399)
T KOG0296|consen 166 GSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQA-------EGLELPC 238 (399)
T ss_pred ecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccc-------ccCcCCc
Confidence 999999999999998888999999999999999999999999999999999999999999998532 2345677
Q ss_pred EEEcCCCCEEEEEcCcceEEe
Q 023643 257 ITLDASESWLVRVRATNYVIL 277 (279)
Q Consensus 257 ~~~~~~~~~l~~~~~d~~i~~ 277 (279)
+.++..+..+++|+.++.+++
T Consensus 239 ~~~~~~~~~~~~g~~e~~~~~ 259 (399)
T KOG0296|consen 239 ISLNLAGSTLTKGNSEGVACG 259 (399)
T ss_pred cccccccceeEeccCCccEEE
Confidence 888888888888888877654
No 83
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=3.3e-29 Score=179.74 Aligned_cols=233 Identities=14% Similarity=0.180 Sum_probs=185.5
Q ss_pred CCCceeeeccccc----------------cccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcc
Q 023643 1 MCGDSTNWDEDAY----------------RKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISK 64 (279)
Q Consensus 1 ~dG~v~iw~~~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 64 (279)
+|-.|+|.|++.. +...++++-.|.++|+++.|+| ....|++|+.|++|++||+.....
T Consensus 132 aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP----re~ILiS~srD~tvKlFDfsK~sa- 206 (430)
T KOG0640|consen 132 ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP----RETILISGSRDNTVKLFDFSKTSA- 206 (430)
T ss_pred CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc----hhheEEeccCCCeEEEEecccHHH-
Confidence 4667888886511 1234667778999999999999 899999999999999999986321
Q ss_pred cccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEe
Q 023643 65 LPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDL 144 (279)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (279)
.+..+.++ ...+|.+++|+|.|. +|+.|..-.++++||+++.+...... ....+
T Consensus 207 ---------------KrA~K~~q-d~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~Qcfvsan-Pd~qh------- 260 (430)
T KOG0640|consen 207 ---------------KRAFKVFQ-DTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSAN-PDDQH------- 260 (430)
T ss_pred ---------------HHHHHHhh-ccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecC-ccccc-------
Confidence 12222333 456899999999998 99999999999999987653221111 12222
Q ss_pred ecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee-cCC-cceEEEEEcCCCcEEEEecCC
Q 023643 145 VNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK-GHS-DYLHCIVARNSTNQIVTGSED 222 (279)
Q Consensus 145 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~-~~i~~i~~~~~~~~l~~~~~d 222 (279)
...|+++.+++.+++.++++.||.|++||--++++++++. .|. ..|.+..|..+++++++.+.|
T Consensus 261 --------------t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~D 326 (430)
T KOG0640|consen 261 --------------TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKD 326 (430)
T ss_pred --------------ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCc
Confidence 2248999999999999999999999999999999999886 354 468888999999999999999
Q ss_pred CeEEEEeCCCCceEEEecCCcc-----------------------------------------ccccCcceeeeEEEEcC
Q 023643 223 GTARIWDCKSGKCIKVIDPVKD-----------------------------------------KQLKGVISCVSCITLDA 261 (279)
Q Consensus 223 ~~i~vwd~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~v~~~~~~~ 261 (279)
..+++|.+.+++.+..+.+.-. .--.+|++.+..+.-+|
T Consensus 327 S~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP 406 (430)
T KOG0640|consen 327 STVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSP 406 (430)
T ss_pred ceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCC
Confidence 9999999999998887754310 01247999999999999
Q ss_pred CCCEEEEEcCcceEEeC
Q 023643 262 SESWLVRVRATNYVILF 278 (279)
Q Consensus 262 ~~~~l~~~~~d~~i~~w 278 (279)
.+.-++|++.|-.+++|
T Consensus 407 ~~p~FmTcsdD~raRFW 423 (430)
T KOG0640|consen 407 VEPAFMTCSDDFRARFW 423 (430)
T ss_pred CCCceeeecccceeeee
Confidence 99999999999999999
No 84
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=4.5e-28 Score=195.89 Aligned_cols=186 Identities=17% Similarity=0.143 Sum_probs=143.8
Q ss_pred ecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCC-CCceEEEEeeCCCcEEEeecCCCc
Q 023643 47 ASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGG-NEDALLLSCGDDGRICGWRWKEFT 125 (279)
Q Consensus 47 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iw~~~~~~ 125 (279)
|+.++.|++|+... ..++..+.+|.++|.+++|+|+ +. +|++|+.|++|++||+.+..
T Consensus 50 GG~~gvI~L~~~~r-------------------~~~v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~ 108 (568)
T PTZ00420 50 GGLIGAIRLENQMR-------------------KPPVIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHND 108 (568)
T ss_pred CCceeEEEeeecCC-------------------CceEEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCC
Confidence 55678889998776 4556778899999999999997 55 99999999999999986432
Q ss_pred cCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCe-EEEecCCCeEEEEecCCCcEEEEeecCCcce
Q 023643 126 ESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGA-IFSAAGDSCAYCWDVESSRIKMVFKGHSDYL 204 (279)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i 204 (279)
.... .. ..++..+ ..+...|.+++|+|++.. +++++.|+.|++||+++++.+..+. |...|
T Consensus 109 ~~~~--~i----~~p~~~L-----------~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V 170 (568)
T PTZ00420 109 ESVK--EI----KDPQCIL-----------KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKL 170 (568)
T ss_pred cccc--cc----ccceEEe-----------ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcE
Confidence 1000 00 0011111 112234899999998875 5788999999999999998887776 66789
Q ss_pred EEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceee-----eEEEEcCCCCEEEEEcCcc----eE
Q 023643 205 HCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCV-----SCITLDASESWLVRVRATN----YV 275 (279)
Q Consensus 205 ~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~d~----~i 275 (279)
.+++|+|+|.+|++++.|+.|+|||+++++.+..+ .+|...+ ....|++++.+|++++.|+ .|
T Consensus 171 ~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl--------~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~V 242 (568)
T PTZ00420 171 SSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF--------HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREM 242 (568)
T ss_pred EEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE--------ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEE
Confidence 99999999999999999999999999999998888 4555433 3344678999999887764 79
Q ss_pred EeCC
Q 023643 276 ILFS 279 (279)
Q Consensus 276 ~~wd 279 (279)
+|||
T Consensus 243 kLWD 246 (568)
T PTZ00420 243 KLWD 246 (568)
T ss_pred EEEE
Confidence 9997
No 85
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=9.5e-28 Score=165.25 Aligned_cols=231 Identities=18% Similarity=0.256 Sum_probs=171.7
Q ss_pred eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccc-----ccccCCccc------------ceee---
Q 023643 19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKL-----PLGLSNSKV------------QQLL--- 78 (279)
Q Consensus 19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-----~~~~~~~~~------------~~~~--- 78 (279)
+..+.|.+.|+|.+|+| +|++||+|++|.+|++..++...+.. .+....... ..++
T Consensus 83 kr~khhkgsiyc~~ws~----~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ 158 (350)
T KOG0641|consen 83 KRNKHHKGSIYCTAWSP----CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA 158 (350)
T ss_pred eeccccCccEEEEEecC----ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec
Confidence 34567899999999999 89999999999999998776543222 111111110 0010
Q ss_pred -------------eccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEee
Q 023643 79 -------------GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLV 145 (279)
Q Consensus 79 -------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (279)
.++..+.+.+|++-|.++--- ++- ++++|+.|.+|++||++-.. +...+....
T Consensus 159 gagdc~iy~tdc~~g~~~~a~sghtghilalysw-n~~--m~~sgsqdktirfwdlrv~~---~v~~l~~~~-------- 224 (350)
T KOG0641|consen 159 GAGDCKIYITDCGRGQGFHALSGHTGHILALYSW-NGA--MFASGSQDKTIRFWDLRVNS---CVNTLDNDF-------- 224 (350)
T ss_pred CCCcceEEEeecCCCCcceeecCCcccEEEEEEe-cCc--EEEccCCCceEEEEeeeccc---eeeeccCcc--------
Confidence 167777888999999886422 343 89999999999999987432 222221110
Q ss_pred cCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeE
Q 023643 146 NHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTA 225 (279)
Q Consensus 146 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i 225 (279)
+.+ -.....|.+++..|.|++|++|..|....+||++.+++++.|..|...|+|+.|+|.-.|+++++.|..|
T Consensus 225 ---~~~----glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~i 297 (350)
T KOG0641|consen 225 ---HDG----GLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKI 297 (350)
T ss_pred ---cCC----CcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceE
Confidence 000 0001247899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 226 RIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 226 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
++=|+.- .+...+..- ....|...+..+.|+|..--+++.+.|.++.+|
T Consensus 298 kltdlqg-dla~el~~~---vv~ehkdk~i~~rwh~~d~sfisssadkt~tlw 346 (350)
T KOG0641|consen 298 KLTDLQG-DLAHELPIM---VVAEHKDKAIQCRWHPQDFSFISSSADKTATLW 346 (350)
T ss_pred EEeeccc-chhhcCceE---EEEeccCceEEEEecCccceeeeccCcceEEEe
Confidence 9999863 222221100 015677788889999999999999999999999
No 86
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=4.3e-29 Score=201.08 Aligned_cols=210 Identities=22% Similarity=0.395 Sum_probs=181.7
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.|.++|+||..++ .+...+.+|.+.|.++...+ .++++|+.|.+|++|++.+ +
T Consensus 269 ~D~t~rvWd~~sg--~C~~~l~gh~stv~~~~~~~------~~~~sgs~D~tVkVW~v~n-------------------~ 321 (537)
T KOG0274|consen 269 TDKTERVWDCSTG--ECTHSLQGHTSSVRCLTIDP------FLLVSGSRDNTVKVWDVTN-------------------G 321 (537)
T ss_pred cCCcEEeEecCCC--cEEEEecCCCceEEEEEccC------ceEeeccCCceEEEEeccC-------------------c
Confidence 4889999998877 66888999999999999877 6888999999999999998 7
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
..+..+.+|.++|.++... +. ++++|+.|++|++||+. ..++...+.+|..
T Consensus 322 ~~l~l~~~h~~~V~~v~~~--~~--~lvsgs~d~~v~VW~~~---~~~cl~sl~gH~~---------------------- 372 (537)
T KOG0274|consen 322 ACLNLLRGHTGPVNCVQLD--EP--LLVSGSYDGTVKVWDPR---TGKCLKSLSGHTG---------------------- 372 (537)
T ss_pred ceEEEeccccccEEEEEec--CC--EEEEEecCceEEEEEhh---hceeeeeecCCcc----------------------
Confidence 7888888999999999998 44 99999999999999986 3456666666332
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCC-cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEe
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESS-RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 239 (279)
+|.++.+.+. ..+++|+.|+.|++||+++. +++..+.+|.+-+..+.+ .+++|++++.|++|++||..++++++++
T Consensus 373 ~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~ 449 (537)
T KOG0274|consen 373 RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTL 449 (537)
T ss_pred eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeee
Confidence 3678877664 79999999999999999999 999999999998877665 4789999999999999999999999999
Q ss_pred cCCccccccC-cceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 240 DPVKDKQLKG-VISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 240 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
. + |...|+.+++. ...+++++.||.+.+||
T Consensus 450 ~--------~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 450 E--------GRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred c--------cCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 4 4 66788888876 57789999999999997
No 87
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.9e-28 Score=183.16 Aligned_cols=231 Identities=13% Similarity=0.195 Sum_probs=176.0
Q ss_pred eeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccc
Q 023643 5 STNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDG 84 (279)
Q Consensus 5 v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (279)
+.+|.+..... ......-+++|.+++-+| +|.+|+.|+-.|.|++|.+.+ +..+.
T Consensus 63 l~vw~i~k~~~--~~q~~v~Pg~v~al~s~n----~G~~l~ag~i~g~lYlWelss-------------------G~LL~ 117 (476)
T KOG0646|consen 63 LHVWEILKKDQ--VVQYIVLPGPVHALASSN----LGYFLLAGTISGNLYLWELSS-------------------GILLN 117 (476)
T ss_pred ccccccCchhh--hhhhcccccceeeeecCC----CceEEEeecccCcEEEEEecc-------------------ccHHH
Confidence 45666555432 222333468899999999 899999999999999999999 78888
Q ss_pred cccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCcee
Q 023643 85 FLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNA 164 (279)
Q Consensus 85 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 164 (279)
.+.+|-.+|+++.|+.++. +|+|||.||.|.+|.+-+.-.. ...+...|+..+. .| .-.|+.
T Consensus 118 v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~lv~a-----~~~~~~~p~~~f~--~H---------tlsITD 179 (476)
T KOG0646|consen 118 VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDLVSA-----DNDHSVKPLHIFS--DH---------TLSITD 179 (476)
T ss_pred HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEeeccc-----ccCCCccceeeec--cC---------cceeEE
Confidence 9999999999999999998 9999999999999997432111 0111122222111 11 113677
Q ss_pred EEEcCC--CCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCc--eE----
Q 023643 165 IAVDPQ--GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGK--CI---- 236 (279)
Q Consensus 165 ~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~--~~---- 236 (279)
+...+. ..++++++.|.++++||+..+.++.++. ....+.+++.+|.++.+..|+.+|.|.+.++.... ..
T Consensus 180 l~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~ 258 (476)
T KOG0646|consen 180 LQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQ 258 (476)
T ss_pred EEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccc
Confidence 766653 4589999999999999999999988886 56789999999999999999999999998875432 11
Q ss_pred EE--ecCCccccccCcce--eeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 237 KV--IDPVKDKQLKGVIS--CVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 237 ~~--~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+. ........+.+|.. .|+|++.+-||..|++|+.||.|++||
T Consensus 259 k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 259 KGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred cccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 11 11111234478887 999999999999999999999999997
No 88
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=9.3e-30 Score=183.86 Aligned_cols=221 Identities=17% Similarity=0.172 Sum_probs=182.5
Q ss_pred CCCceeeecccccccc------ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccc
Q 023643 1 MCGDSTNWDEDAYRKS------ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKV 74 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 74 (279)
.||-|.+||..+++.. .-..+-.+..+|.|+.|+. |...||+|+.||.|++|.+.+
T Consensus 233 vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR----DsEMlAsGsqDGkIKvWri~t-------------- 294 (508)
T KOG0275|consen 233 VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR----DSEMLASGSQDGKIKVWRIET-------------- 294 (508)
T ss_pred ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc----cHHHhhccCcCCcEEEEEEec--------------
Confidence 3899999997665421 1123446789999999999 999999999999999999999
Q ss_pred ceeeecccccccc-CCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcc
Q 023643 75 QQLLGIEPDGFLH-GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPW 153 (279)
Q Consensus 75 ~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (279)
+.+++.|. .|...|+++.|+.++. .+++++.|.++++.-+.. ++....+.++..
T Consensus 295 -----G~ClRrFdrAHtkGvt~l~FSrD~S--qiLS~sfD~tvRiHGlKS---GK~LKEfrGHsS--------------- 349 (508)
T KOG0275|consen 295 -----GQCLRRFDRAHTKGVTCLSFSRDNS--QILSASFDQTVRIHGLKS---GKCLKEFRGHSS--------------- 349 (508)
T ss_pred -----chHHHHhhhhhccCeeEEEEccCcc--hhhcccccceEEEecccc---chhHHHhcCccc---------------
Confidence 78888886 7999999999999998 999999999999998754 345555555432
Q ss_pred ccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec----------------------------------
Q 023643 154 GALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG---------------------------------- 199 (279)
Q Consensus 154 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---------------------------------- 199 (279)
.|+...|.++|..+++++.||+|++|+..+.+++.+|+.
T Consensus 350 -------yvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~ 422 (508)
T KOG0275|consen 350 -------YVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM 422 (508)
T ss_pred -------cccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec
Confidence 268889999999999999999999999887665544321
Q ss_pred -------------CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEE
Q 023643 200 -------------HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWL 266 (279)
Q Consensus 200 -------------~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 266 (279)
..+...+.+.+|.|.++.+.+.|+.++.|...+|+...++ .-|...|-+++-+|..+.|
T Consensus 423 qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl--------~VhEkdvIGl~HHPHqNll 494 (508)
T KOG0275|consen 423 QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL--------PVHEKDVIGLTHHPHQNLL 494 (508)
T ss_pred cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeee--------ecccccccccccCcccchh
Confidence 1122345678899999999999999999999999999998 6777888999999999999
Q ss_pred EEEcCcceEEeCC
Q 023643 267 VRVRATNYVILFS 279 (279)
Q Consensus 267 ~~~~~d~~i~~wd 279 (279)
|+-++||.+++|-
T Consensus 495 AsYsEDgllKLWk 507 (508)
T KOG0275|consen 495 ASYSEDGLLKLWK 507 (508)
T ss_pred hhhcccchhhhcC
Confidence 9999999999993
No 89
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=1.2e-28 Score=193.52 Aligned_cols=213 Identities=20% Similarity=0.331 Sum_probs=181.3
Q ss_pred CCceeeeccccccccceeeeeecccceEE-EEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFR-TVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
||++++|+.++........+.+|.+-|.. ++|-+. ++-+|++|+.|+.|.+|...+ .
T Consensus 34 d~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~---~~~~l~~g~~D~~i~v~~~~~-------------------~ 91 (745)
T KOG0301|consen 34 DGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAES---DKGRLVVGGMDTTIIVFKLSQ-------------------A 91 (745)
T ss_pred CCceeeeeccCcccccceecccCcceeeccceeccc---cCcceEeecccceEEEEecCC-------------------C
Confidence 89999999877765445567777787777 888873 677899999999999999998 7
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
.|..++++|+..|.++....++ .++|||.|.++++|.... ....+.+|. .
T Consensus 92 ~P~~~LkgH~snVC~ls~~~~~---~~iSgSWD~TakvW~~~~-----l~~~l~gH~-a--------------------- 141 (745)
T KOG0301|consen 92 EPLYTLKGHKSNVCSLSIGEDG---TLISGSWDSTAKVWRIGE-----LVYSLQGHT-A--------------------- 141 (745)
T ss_pred CchhhhhccccceeeeecCCcC---ceEecccccceEEecchh-----hhcccCCcc-h---------------------
Confidence 8999999999999999987766 599999999999999643 222233332 2
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
.|.+++.-|++ .+++|+.|.+|++|.- ++.+++|.+|...|+.+++-++ ..+++++.||.|++|++ +|+++.+.
T Consensus 142 sVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~- 215 (745)
T KOG0301|consen 142 SVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEM- 215 (745)
T ss_pred heeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEec-cCceeeee-
Confidence 36788888876 8999999999999985 8899999999999999999865 56789999999999998 78888888
Q ss_pred CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+|+..|.+++..+++..++++++|+++++|+
T Consensus 216 -------~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 216 -------HGHTNFVYSISMALSDGLIVSTGEDRTLRIWK 247 (745)
T ss_pred -------eccceEEEEEEecCCCCeEEEecCCceEEEee
Confidence 79999999999888889999999999999995
No 90
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.2e-27 Score=170.53 Aligned_cols=218 Identities=17% Similarity=0.237 Sum_probs=170.9
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
|-+||.-++... +.++-+.+|...|.+|+.+| -++.+++++.|++|++||++.. +
T Consensus 79 d~tIryLsl~dN--kylRYF~GH~~~V~sL~~sP----~~d~FlS~S~D~tvrLWDlR~~-------------------~ 133 (311)
T KOG1446|consen 79 DDTIRYLSLHDN--KYLRYFPGHKKRVNSLSVSP----KDDTFLSSSLDKTVRLWDLRVK-------------------K 133 (311)
T ss_pred CCceEEEEeecC--ceEEEcCCCCceEEEEEecC----CCCeEEecccCCeEEeeEecCC-------------------C
Confidence 456777777766 45889999999999999999 6799999999999999999973 3
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCc-ceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESK-VPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
+...+.. ..-...+|.|.|- ++|++.....|++||++....+. ....+.... ..
T Consensus 134 cqg~l~~--~~~pi~AfDp~GL--ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~---------------------~~ 188 (311)
T KOG1446|consen 134 CQGLLNL--SGRPIAAFDPEGL--IFALANGSELIKLYDLRSFDKGPFTTFSITDND---------------------EA 188 (311)
T ss_pred CceEEec--CCCcceeECCCCc--EEEEecCCCeEEEEEecccCCCCceeEccCCCC---------------------cc
Confidence 3333322 2234578999997 88888887799999998653221 122222111 11
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcce---EEEEEcCCCcEEEEecCCCeEEEEeCCCCceEE
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYL---HCIVARNSTNQIVTGSEDGTARIWDCKSGKCIK 237 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i---~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~ 237 (279)
+.+.+.|+|+|+.++.++..+.+++.|.-+|..+.++..+...- ...+|.|+++++++|+.||+|.+|++++++.+.
T Consensus 189 ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 189 EWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVA 268 (311)
T ss_pred ceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEee
Confidence 36899999999999999999999999999999999988765432 567899999999999999999999999999999
Q ss_pred EecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 238 VIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
.+.+ .+..++.++.|.|.-..+++++ ..+.+|
T Consensus 269 ~~~~-------~~~~~~~~~~fnP~~~mf~sa~--s~l~fw 300 (311)
T KOG1446|consen 269 VLRG-------PNGGPVSCVRFNPRYAMFVSAS--SNLVFW 300 (311)
T ss_pred EecC-------CCCCCccccccCCceeeeeecC--ceEEEE
Confidence 9953 2677899999999777777664 455555
No 91
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=5.1e-28 Score=180.51 Aligned_cols=196 Identities=20% Similarity=0.253 Sum_probs=170.8
Q ss_pred cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643 26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA 105 (279)
Q Consensus 26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 105 (279)
..+.++...| ..+.+++|+.|..+.++|..+ .+.+.+++||...|+.+.|+|+..
T Consensus 220 pgi~ald~~~----s~~~ilTGG~d~~av~~d~~s-------------------~q~l~~~~Gh~kki~~v~~~~~~~-- 274 (506)
T KOG0289|consen 220 PGITALDIIP----SSSKILTGGEDKTAVLFDKPS-------------------NQILATLKGHTKKITSVKFHKDLD-- 274 (506)
T ss_pred CCeeEEeecC----CCCcceecCCCCceEEEecch-------------------hhhhhhccCcceEEEEEEeccchh--
Confidence 4678888888 578999999999999999998 788899999999999999999988
Q ss_pred EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEE
Q 023643 106 LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYC 185 (279)
Q Consensus 106 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 185 (279)
.+++++.|..|++|........ .... .+...|+.+..+|.|.||+++++|++..+
T Consensus 275 ~v~~aSad~~i~vws~~~~s~~---~~~~----------------------~h~~~V~~ls~h~tgeYllsAs~d~~w~F 329 (506)
T KOG0289|consen 275 TVITASADEIIRVWSVPLSSEP---TSSR----------------------PHEEPVTGLSLHPTGEYLLSASNDGTWAF 329 (506)
T ss_pred heeecCCcceEEeeccccccCc---cccc----------------------cccccceeeeeccCCcEEEEecCCceEEE
Confidence 9999999999999997543211 1111 12224799999999999999999999999
Q ss_pred EecCCCcEEEEeec--CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCC
Q 023643 186 WDVESSRIKMVFKG--HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASE 263 (279)
Q Consensus 186 ~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 263 (279)
.|++++..+..... ..-.+++.+|+|||..|.+|..||.|+|||+.++..+..| .+|.++|..++|+.+|
T Consensus 330 sd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~F--------pght~~vk~i~FsENG 401 (506)
T KOG0289|consen 330 SDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKF--------PGHTGPVKAISFSENG 401 (506)
T ss_pred EEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccC--------CCCCCceeEEEeccCc
Confidence 99999988876653 2345899999999999999999999999999999988888 7899999999999999
Q ss_pred CEEEEEcCcceEEeCC
Q 023643 264 SWLVRVRATNYVILFS 279 (279)
Q Consensus 264 ~~l~~~~~d~~i~~wd 279 (279)
-||+++..|+.|++||
T Consensus 402 Y~Lat~add~~V~lwD 417 (506)
T KOG0289|consen 402 YWLATAADDGSVKLWD 417 (506)
T ss_pred eEEEEEecCCeEEEEE
Confidence 9999999999999998
No 92
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=4.6e-28 Score=190.27 Aligned_cols=208 Identities=20% Similarity=0.265 Sum_probs=175.4
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
||+++-+|.+.+. ..+..+.+|...|.+++-.. ++. +++|+.|.++++|-...
T Consensus 79 ~D~~i~v~~~~~~--~P~~~LkgH~snVC~ls~~~----~~~-~iSgSWD~TakvW~~~~-------------------- 131 (745)
T KOG0301|consen 79 MDTTIIVFKLSQA--EPLYTLKGHKSNVCSLSIGE----DGT-LISGSWDSTAKVWRIGE-------------------- 131 (745)
T ss_pred ccceEEEEecCCC--CchhhhhccccceeeeecCC----cCc-eEecccccceEEecchh--------------------
Confidence 6889999998776 44888999999999999877 566 99999999999999865
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
....+++|+..|+++...|.+ .++|||.|.+|++|.- ......+.+ |..
T Consensus 132 -l~~~l~gH~asVWAv~~l~e~---~~vTgsaDKtIklWk~-----~~~l~tf~g-HtD--------------------- 180 (745)
T KOG0301|consen 132 -LVYSLQGHTASVWAVASLPEN---TYVTGSADKTIKLWKG-----GTLLKTFSG-HTD--------------------- 180 (745)
T ss_pred -hhcccCCcchheeeeeecCCC---cEEeccCcceeeeccC-----Cchhhhhcc-chh---------------------
Confidence 345689999999999999987 6999999999999983 233444444 322
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
.|+.+++-+++ .++++++||.|++|++ +++.+.++.+|++.++++...+++..++++++|++++||+.. ++.+.+.
T Consensus 181 ~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~ 256 (745)
T KOG0301|consen 181 CVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT 256 (745)
T ss_pred heeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe
Confidence 26888988754 6889999999999999 799999999999999999988889999999999999999865 7777773
Q ss_pred CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
-....|+++.+-++|. |++|+.||.|+||.
T Consensus 257 --------lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 257 --------LPTTSIWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred --------cCccceEEEEEeeCCC-EEEeccCceEEEEE
Confidence 3334789999888887 78889999999984
No 93
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.96 E-value=3.9e-28 Score=178.17 Aligned_cols=229 Identities=16% Similarity=0.207 Sum_probs=170.3
Q ss_pred CCceeeeccccc--------------cccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccccc
Q 023643 2 CGDSTNWDEDAY--------------RKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPL 67 (279)
Q Consensus 2 dG~v~iw~~~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 67 (279)
.|.|+||++... ....+.++.+|...=++|+|||. ....|++|..-+.|++|...++.=
T Consensus 174 ~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~---~~g~LlsGDc~~~I~lw~~~~g~W---- 246 (440)
T KOG0302|consen 174 NGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPI---KTGRLLSGDCVKGIHLWEPSTGSW---- 246 (440)
T ss_pred cCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccc---cccccccCccccceEeeeeccCce----
Confidence 488999995321 23446688899999999999994 455688999999999999987420
Q ss_pred ccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecC
Q 023643 68 GLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNH 147 (279)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (279)
..-...+.+|+..|..|+|+|... ..|+|||.||+|+|||+|..+...+... +. +
T Consensus 247 ------------~vd~~Pf~gH~~SVEDLqWSptE~-~vfaScS~DgsIrIWDiRs~~~~~~~~~-kA-h---------- 301 (440)
T KOG0302|consen 247 ------------KVDQRPFTGHTKSVEDLQWSPTED-GVFASCSCDGSIRIWDIRSGPKKAAVST-KA-H---------- 301 (440)
T ss_pred ------------eecCccccccccchhhhccCCccC-ceEEeeecCceEEEEEecCCCccceeEe-ec-c----------
Confidence 111234567999999999999877 5999999999999999987544333333 11 1
Q ss_pred CCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCC---CcEEEEeecCCcceEEEEEcCC-CcEEEEecCCC
Q 023643 148 QHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVES---SRIKMVFKGHSDYLHCIVARNS-TNQIVTGSEDG 223 (279)
Q Consensus 148 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~ 223 (279)
...|+.|+|+....+|++|+.||+++|||+++ ++++..|+.|..+|+++.|+|. ...|++++.|.
T Consensus 302 -----------~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~ 370 (440)
T KOG0302|consen 302 -----------NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDN 370 (440)
T ss_pred -----------CCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCC
Confidence 12379999999888999999999999999986 5788999999999999999995 67889999999
Q ss_pred eEEEEeCCCCce-----------EEEecCCccccccCcceeeeEEEEcCC-CCEEEEEcCcce
Q 023643 224 TARIWDCKSGKC-----------IKVIDPVKDKQLKGVISCVSCITLDAS-ESWLVRVRATNY 274 (279)
Q Consensus 224 ~i~vwd~~~~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~ 274 (279)
+|.+||+....- +..++++. ..+..-...+..+.|++. .-+|++.+.||.
T Consensus 371 QitiWDlsvE~D~ee~~~~a~~~L~dlPpQL-LFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 371 QITIWDLSVEADEEEIDQEAAEGLQDLPPQL-LFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred cEEEEEeeccCChhhhccccccchhcCCcee-EEEecchhHhhhheeccCCCCeEEEecccce
Confidence 999999853211 11111111 001112345778899986 346777777874
No 94
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.9e-28 Score=180.95 Aligned_cols=225 Identities=17% Similarity=0.263 Sum_probs=176.1
Q ss_pred CCCceeeecccccccc--c-----------------eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCC
Q 023643 1 MCGDSTNWDEDAYRKS--I-----------------LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSC 61 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~--~-----------------~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 61 (279)
||-.|.|||++-.... . -....+|+..|.+|+|+.. ..+.||+|+.|.+|++||+.+
T Consensus 200 mdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~---~~nVLaSgsaD~TV~lWD~~~- 275 (463)
T KOG0270|consen 200 MDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN---FRNVLASGSADKTVKLWDVDT- 275 (463)
T ss_pred cCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc---cceeEEecCCCceEEEEEcCC-
Confidence 5778999997532100 0 0113479999999999985 678999999999999999999
Q ss_pred CcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccce
Q 023643 62 ISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPV 141 (279)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 141 (279)
+++..++..|.++|.++.|+|... .+|++|+.|++|.+.|.|..........+.+
T Consensus 276 ------------------g~p~~s~~~~~k~Vq~l~wh~~~p-~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g------ 330 (463)
T KOG0270|consen 276 ------------------GKPKSSITHHGKKVQTLEWHPYEP-SVLLSGSYDGTVALKDCRDPSNSGKEWKFDG------ 330 (463)
T ss_pred ------------------CCcceehhhcCCceeEEEecCCCc-eEEEeccccceEEeeeccCccccCceEEecc------
Confidence 788888999999999999999877 6999999999999999885333333333333
Q ss_pred EEeecCCCCCccccCCCCCCceeEEEcCCCC-eEEEecCCCeEEEEecCCC-cEEEEeecCCcceEEEEEcCC-CcEEEE
Q 023643 142 LDLVNHQHKGPWGALSPVPENNAIAVDPQGG-AIFSAAGDSCAYCWDVESS-RIKMVFKGHSDYLHCIVARNS-TNQIVT 218 (279)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~-~~~l~~ 218 (279)
.|..++|+|... .+++++.||+++-+|+|+. +++.+++.|.+.|.++++++. ..++++
T Consensus 331 -------------------~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t 391 (463)
T KOG0270|consen 331 -------------------EVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLST 391 (463)
T ss_pred -------------------ceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceee
Confidence 378899998654 6778889999999999985 999999999999999999985 678999
Q ss_pred ecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCC-CEEEEEcCcceEEeCC
Q 023643 219 GSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASE-SWLVRVRATNYVILFS 279 (279)
Q Consensus 219 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd 279 (279)
++.|+.|++|++........... .-.-+...|+++.|+- -+|+.|+..+.+++||
T Consensus 392 ~s~d~~Vklw~~~~~~~~~v~~~------~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 392 ASTDKVVKLWKFDVDSPKSVKEH------SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred ccccceEEEEeecCCCCcccccc------cccccceeecccCCCcceEEEecCccceEEEee
Confidence 99999999999876544333211 0111236677788864 4677888888999997
No 95
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.1e-27 Score=179.72 Aligned_cols=205 Identities=14% Similarity=0.247 Sum_probs=169.3
Q ss_pred eecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCC
Q 023643 22 EILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGG 101 (279)
Q Consensus 22 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 101 (279)
+.|...+.+++.++ |+.+||+|+.|..|.||+.++ .+++..+.+|.+.|.+++|-..
T Consensus 199 ~~h~keil~~avS~----Dgkylatgg~d~~v~Iw~~~t-------------------~ehv~~~~ghr~~V~~L~fr~g 255 (479)
T KOG0299|consen 199 KGHVKEILTLAVSS----DGKYLATGGRDRHVQIWDCDT-------------------LEHVKVFKGHRGAVSSLAFRKG 255 (479)
T ss_pred ccccceeEEEEEcC----CCcEEEecCCCceEEEecCcc-------------------cchhhcccccccceeeeeeecC
Confidence 37899999999999 999999999999999999999 7888999999999999999877
Q ss_pred CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCC
Q 023643 102 NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDS 181 (279)
Q Consensus 102 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 181 (279)
.. .|++++.|++|++|+++.. ..+..+.+++. .|..|....-++.+-+|+.|.
T Consensus 256 t~--~lys~s~Drsvkvw~~~~~---s~vetlyGHqd----------------------~v~~IdaL~reR~vtVGgrDr 308 (479)
T KOG0299|consen 256 TS--ELYSASADRSVKVWSIDQL---SYVETLYGHQD----------------------GVLGIDALSRERCVTVGGRDR 308 (479)
T ss_pred cc--ceeeeecCCceEEEehhHh---HHHHHHhCCcc----------------------ceeeechhcccceEEeccccc
Confidence 76 8999999999999998643 22233333332 366777666677777788999
Q ss_pred eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccc----cccCcceeeeEE
Q 023643 182 CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDK----QLKGVISCVSCI 257 (279)
Q Consensus 182 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~----~~~~~~~~v~~~ 257 (279)
++++|++. .+....+.++.+.+-|++|- +...+++||.+|.|.+|++...+++.+.+..... ....+..+|+++
T Consensus 309 T~rlwKi~-eesqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsl 386 (479)
T KOG0299|consen 309 TVRLWKIP-EESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSL 386 (479)
T ss_pred eeEEEecc-ccceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeee
Confidence 99999994 45556688899999999996 4578999999999999999999988877543211 012233599999
Q ss_pred EEcCCCCEEEEEcCcceEEeC
Q 023643 258 TLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 258 ~~~~~~~~l~~~~~d~~i~~w 278 (279)
+..|...++|+|+.+|.|++|
T Consensus 387 a~i~~sdL~asGS~~G~vrLW 407 (479)
T KOG0299|consen 387 AVIPGSDLLASGSWSGCVRLW 407 (479)
T ss_pred EecccCceEEecCCCCceEEE
Confidence 999999999999999999999
No 96
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1e-27 Score=196.88 Aligned_cols=235 Identities=17% Similarity=0.207 Sum_probs=176.1
Q ss_pred cccceEEEEECCCCCCCCCEEEEec--CCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCC
Q 023643 24 LTRTVFRTVWGPSKDGSPDTIVIAS--SDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGG 101 (279)
Q Consensus 24 ~~~~v~~~~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 101 (279)
+...|.++..+| ++..+|+|+ .||.++||+...-..... ..+..+ .+.+..+..|.+.|+|+.|+|+
T Consensus 12 ~~~~IfSIdv~p----dg~~~aTgGq~~d~~~~iW~~~~vl~~~~------~~~~~l-~k~l~~m~~h~~sv~CVR~S~d 80 (942)
T KOG0973|consen 12 NEKSIFSIDVHP----DGVKFATGGQVLDGGIVIWSQDPVLDEKE------EKNENL-PKHLCTMDDHDGSVNCVRFSPD 80 (942)
T ss_pred CCeeEEEEEecC----CceeEecCCccccccceeeccccccchhh------hhhccc-chhheeeccccCceeEEEECCC
Confidence 456699999999 999999999 999999999875211100 001111 5667788889999999999999
Q ss_pred CCceEEEEeeCCCcEEEeecCCCccCcceeee-ccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCC
Q 023643 102 NEDALLLSCGDDGRICGWRWKEFTESKVPINL-QGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD 180 (279)
Q Consensus 102 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 180 (279)
|+ +||+|+.|+.|.||..... ........ .+.+...-|... .....|...|..++|+|++.+|++++.|
T Consensus 81 G~--~lAsGSDD~~v~iW~~~~~-~~~~~fgs~g~~~~vE~wk~~-------~~l~~H~~DV~Dv~Wsp~~~~lvS~s~D 150 (942)
T KOG0973|consen 81 GS--YLASGSDDRLVMIWERAEI-GSGTVFGSTGGAKNVESWKVV-------SILRGHDSDVLDVNWSPDDSLLVSVSLD 150 (942)
T ss_pred CC--eEeeccCcceEEEeeeccc-CCcccccccccccccceeeEE-------EEEecCCCccceeccCCCccEEEEeccc
Confidence 99 9999999999999997631 11111111 111111111100 0011234468999999999999999999
Q ss_pred CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCc-----------------
Q 023643 181 SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVK----------------- 243 (279)
Q Consensus 181 ~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~----------------- 243 (279)
++|.+||.++.+.+..+++|.+.|-.+.|.|-|+||++-+.|++|+||++.+-...+.+..+.
T Consensus 151 nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPD 230 (942)
T KOG0973|consen 151 NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPD 230 (942)
T ss_pred ceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCC
Confidence 999999999999999999999999999999999999999999999999976544444443221
Q ss_pred ---------------------------cccccCcceeeeEEEEcCC-----CC------------EEEEEcCcceEEeCC
Q 023643 244 ---------------------------DKQLKGVISCVSCITLDAS-----ES------------WLVRVRATNYVILFS 279 (279)
Q Consensus 244 ---------------------------~~~~~~~~~~v~~~~~~~~-----~~------------~l~~~~~d~~i~~wd 279 (279)
...+.+|..++.+++|+|. .. .+|+|+.|++|.||.
T Consensus 231 G~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~ 310 (942)
T KOG0973|consen 231 GHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWN 310 (942)
T ss_pred cCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEe
Confidence 1256799999999999872 11 678999999999994
No 97
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=4.9e-27 Score=168.12 Aligned_cols=232 Identities=18% Similarity=0.180 Sum_probs=175.3
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
||.+++|+..... ....+ .|..++.+++|.+ ...+++|+.||.|+.+|++++
T Consensus 34 DgslrlYdv~~~~--l~~~~-~~~~plL~c~F~d-----~~~~~~G~~dg~vr~~Dln~~-------------------- 85 (323)
T KOG1036|consen 34 DGSLRLYDVPANS--LKLKF-KHGAPLLDCAFAD-----ESTIVTGGLDGQVRRYDLNTG-------------------- 85 (323)
T ss_pred cCcEEEEeccchh--hhhhe-ecCCceeeeeccC-----CceEEEeccCceEEEEEecCC--------------------
Confidence 8999999988763 23333 4889999999997 467899999999999999973
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCcc------Ccceeee----------ccCcccceEEee
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTE------SKVPINL----------QGNHVKPVLDLV 145 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~------~~~~~~~----------~~~~~~~~~~~~ 145 (279)
....+..|..+|.+|.+++... .+++||.|++|++||.+.... .+.+..+ .......++++.
T Consensus 86 ~~~~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLR 163 (323)
T KOG1036|consen 86 NEDQIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLR 163 (323)
T ss_pred cceeeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcc
Confidence 2345567999999999998776 899999999999999884211 1111111 111222333443
Q ss_pred cCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCC----cEEEEeecCCc---------ceEEEEEcCC
Q 023643 146 NHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS----RIKMVFKGHSD---------YLHCIVARNS 212 (279)
Q Consensus 146 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~---------~i~~i~~~~~ 212 (279)
+...........-...++|+++-|++.-+++++-||.|.+=.++.. +....|+.|.. +|.+|+|+|-
T Consensus 164 n~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 164 NLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred cccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 3322222222233346899999998888999999999988766655 45566777753 7899999999
Q ss_pred CcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643 213 TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA 271 (279)
Q Consensus 213 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 271 (279)
...|+||+.||.|.+||+.+.+.+..+ ......|..++|+.+|..||+++.
T Consensus 244 ~~tfaTgGsDG~V~~Wd~~~rKrl~q~--------~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 244 HGTFATGGSDGIVNIWDLFNRKRLKQL--------AKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cceEEecCCCceEEEccCcchhhhhhc--------cCCCCceEEEEeccCCCeEEEEec
Confidence 999999999999999999999998888 455667999999999999999864
No 98
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=8.5e-28 Score=173.25 Aligned_cols=236 Identities=19% Similarity=0.238 Sum_probs=186.2
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCC------CCC------cccccc
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIP------SCI------SKLPLG 68 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~------~~~------~~~~~~ 68 (279)
+|.+.+||.++.+ .++..+.+|.+.|++++|++ .+.++++++.|++-.||... ... .+...+
T Consensus 168 ADhTA~iWs~Esg--~CL~~Y~GH~GSVNsikfh~----s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e 241 (481)
T KOG0300|consen 168 ADHTARIWSLESG--ACLATYTGHTGSVNSIKFHN----SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEE 241 (481)
T ss_pred cccceeEEeeccc--cceeeecccccceeeEEecc----ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhh
Confidence 5889999999988 56899999999999999999 89999999999999999832 110 000111
Q ss_pred cCCc---------ccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCccc
Q 023643 69 LSNS---------KVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVK 139 (279)
Q Consensus 69 ~~~~---------~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 139 (279)
-++. ..+......|+..+.+|.+.|.+..|...++ .+++++.|.+-.+||++++ .....+.++..
T Consensus 242 ~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~--Q~vTaSWDRTAnlwDVEtg---e~v~~LtGHd~- 315 (481)
T KOG0300|consen 242 HSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ--QMVTASWDRTANLWDVETG---EVVNILTGHDS- 315 (481)
T ss_pred cccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc--eeeeeeccccceeeeeccC---ceeccccCcch-
Confidence 1110 1111111567788999999999999999998 9999999999999998754 34444444332
Q ss_pred ceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCC-cEEEEeecCCcceEEEEEcCCCcEEEE
Q 023643 140 PVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS-RIKMVFKGHSDYLHCIVARNSTNQIVT 218 (279)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~ 218 (279)
..+.++-+|..+++++.+.|.+.++||.+.. ..+..|++|...|+++.|..+ ..+++
T Consensus 316 ---------------------ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVS 373 (481)
T KOG0300|consen 316 ---------------------ELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVS 373 (481)
T ss_pred ---------------------hccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-Cceee
Confidence 2467778899999999999999999999853 567789999999999999754 67899
Q ss_pred ecCCCeEEEEeCCCCc-eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 219 GSEDGTARIWDCKSGK-CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 219 ~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
|+.|.+|+|||+++.+ ++.++. ...+++.++.+..++.|+.--.+..|++||
T Consensus 374 gSDDrTvKvWdLrNMRsplATIR---------tdS~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 374 GSDDRTVKVWDLRNMRSPLATIR---------TDSPANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cCCCceEEEeeeccccCcceeee---------cCCccceeEeecCCceEEeccCCceEEEEe
Confidence 9999999999999864 566663 345788889998888888888888999987
No 99
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=9.3e-28 Score=171.14 Aligned_cols=222 Identities=18% Similarity=0.267 Sum_probs=169.6
Q ss_pred eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee-ccc---cccccCCccCeEE
Q 023643 20 EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG-IEP---DGFLHGHDGPAYD 95 (279)
Q Consensus 20 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~h~~~v~~ 95 (279)
....|.+.|.++...+. .++++++|+.||.|.+||++....... ..+.. ..+ ...-.+|.-.|.+
T Consensus 38 ~~r~HgGsvNsL~id~t---egrymlSGgadgsi~v~Dl~n~t~~e~--------s~li~k~~c~v~~~h~~~Hky~iss 106 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLT---EGRYMLSGGADGSIAVFDLQNATDYEA--------SGLIAKHKCIVAKQHENGHKYAISS 106 (397)
T ss_pred eeccCCCccceeeeccc---cceEEeecCCCccEEEEEeccccchhh--------ccceeheeeeccccCCccceeeeee
Confidence 34578999999999995 899999999999999999986431110 00000 111 1122358889999
Q ss_pred EEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC---CC
Q 023643 96 VKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ---GG 172 (279)
Q Consensus 96 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~ 172 (279)
+.|.|-.. -+|.+++.|.++++||.++.+.. ..+.+.+ .|.+-+++|- .-
T Consensus 107 ~~WyP~Dt-GmFtssSFDhtlKVWDtnTlQ~a-~~F~me~-------------------------~VYshamSp~a~sHc 159 (397)
T KOG4283|consen 107 AIWYPIDT-GMFTSSSFDHTLKVWDTNTLQEA-VDFKMEG-------------------------KVYSHAMSPMAMSHC 159 (397)
T ss_pred eEEeeecC-ceeecccccceEEEeecccceee-EEeecCc-------------------------eeehhhcChhhhcce
Confidence 99999766 38999999999999998754221 1111111 2566677773 33
Q ss_pred eEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcE-EEEecCCCeEEEEeCCCC-ceEEEecCCcc------
Q 023643 173 AIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ-IVTGSEDGTARIWDCKSG-KCIKVIDPVKD------ 244 (279)
Q Consensus 173 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~------ 244 (279)
++++|..+-.|++.|+.+|..-+.+.+|.+.|.++.|+|...+ |++|+.||.|++||++.. -+...+..+..
T Consensus 160 LiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~ 239 (397)
T KOG4283|consen 160 LIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPIL 239 (397)
T ss_pred EEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccc
Confidence 7888899999999999999999999999999999999997554 789999999999999864 45555543321
Q ss_pred ccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 245 KQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 245 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+.-..|.+.|.+++|..++.++++.+.|..+++|.
T Consensus 240 ~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 240 KTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred cccccccceeeeeeecccchhhhhccCccceEEee
Confidence 12357889999999999999999999999999995
No 100
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.3e-28 Score=179.83 Aligned_cols=222 Identities=15% Similarity=0.179 Sum_probs=171.9
Q ss_pred eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643 18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK 97 (279)
Q Consensus 18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 97 (279)
+..+.+|.+.|.+++=+|. .-..+|+|+.||.|+|||+.+ ..+..+++.|.+.|..|+
T Consensus 59 v~~L~gHrdGV~~lakhp~---~ls~~aSGs~DG~VkiWnlsq-------------------R~~~~~f~AH~G~V~Gi~ 116 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPN---KLSTVASGSCDGEVKIWNLSQ-------------------RECIRTFKAHEGLVRGIC 116 (433)
T ss_pred hhhccccccccchhhcCcc---hhhhhhccccCceEEEEehhh-------------------hhhhheeecccCceeeEE
Confidence 4567899999999999993 447899999999999999998 678899999999999999
Q ss_pred ecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccC----------------cccceEEeecCCCCCccccCCC-CC
Q 023643 98 FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGN----------------HVKPVLDLVNHQHKGPWGALSP-VP 160 (279)
Q Consensus 98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~-~~ 160 (279)
+.. . .+++++.|.+|+.|.++-. ....+.+. ..+...++.......|...+.. ..
T Consensus 117 v~~--~--~~~tvgdDKtvK~wk~~~~----p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~D 188 (433)
T KOG0268|consen 117 VTQ--T--SFFTVGDDKTVKQWKIDGP----PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGAD 188 (433)
T ss_pred ecc--c--ceEEecCCcceeeeeccCC----cceeeeccccccccccccccccccccCceeeecccccCCccceeecCCC
Confidence 987 3 7999999999999996531 11111110 0001111222222233333322 24
Q ss_pred CceeEEEcCCCC-eEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCc-eEEE
Q 023643 161 ENNAIAVDPQGG-AIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGK-CIKV 238 (279)
Q Consensus 161 ~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~ 238 (279)
.|.++.|+|... .|+++..|+.|.+||++++.++.... -...-..|+|+|..-.+++|++|..++.||++..+ ++..
T Consensus 189 ti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v 267 (433)
T KOG0268|consen 189 SISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNV 267 (433)
T ss_pred ceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchh
Confidence 588999999665 67777799999999999999888664 33455789999988889999999999999998753 4455
Q ss_pred ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
. .+|.+.|..+.|+|.|+-+++||.|.+|+||
T Consensus 268 ~--------~dhvsAV~dVdfsptG~EfvsgsyDksIRIf 299 (433)
T KOG0268|consen 268 H--------KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIF 299 (433)
T ss_pred h--------cccceeEEEeccCCCcchhccccccceEEEe
Confidence 4 7999999999999999999999999999997
No 101
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=5.6e-27 Score=167.42 Aligned_cols=210 Identities=16% Similarity=0.205 Sum_probs=155.2
Q ss_pred eecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCC
Q 023643 22 EILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGG 101 (279)
Q Consensus 22 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 101 (279)
....+.|.+|+|||. ...++++++.||+||+|+++.... ..+ +....|.++|.+++|+.+
T Consensus 24 ~pP~DsIS~l~FSP~---~~~~~~A~SWD~tVR~wevq~~g~----------------~~~-ka~~~~~~PvL~v~Wsdd 83 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQ---ADNLLAAGSWDGTVRIWEVQNSGQ----------------LVP-KAQQSHDGPVLDVCWSDD 83 (347)
T ss_pred CCcccchheeEeccc---cCceEEecccCCceEEEEEecCCc----------------ccc-hhhhccCCCeEEEEEccC
Confidence 445688999999993 667788999999999999986311 111 445679999999999999
Q ss_pred CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCC--eEEEecC
Q 023643 102 NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG--AIFSAAG 179 (279)
Q Consensus 102 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~ 179 (279)
+. .+++|+.|+.+++||+...+.. .. +.| ..+|.++.|-+... .|++|+.
T Consensus 84 gs--kVf~g~~Dk~~k~wDL~S~Q~~----~v-~~H---------------------d~pvkt~~wv~~~~~~cl~TGSW 135 (347)
T KOG0647|consen 84 GS--KVFSGGCDKQAKLWDLASGQVS----QV-AAH---------------------DAPVKTCHWVPGMNYQCLVTGSW 135 (347)
T ss_pred Cc--eEEeeccCCceEEEEccCCCee----ee-eec---------------------ccceeEEEEecCCCcceeEeccc
Confidence 98 9999999999999998754211 11 111 12367888876555 8999999
Q ss_pred CCeEEEEecCCCcEEEEee-------------------------------------cCC----cceEEEEEcCCCcEEEE
Q 023643 180 DSCAYCWDVESSRIKMVFK-------------------------------------GHS----DYLHCIVARNSTNQIVT 218 (279)
Q Consensus 180 d~~i~i~d~~~~~~~~~~~-------------------------------------~~~----~~i~~i~~~~~~~~l~~ 218 (279)
|.+|++||+++..++.++. .+. -.++|++..++....+.
T Consensus 136 DKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~al 215 (347)
T KOG0647|consen 136 DKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFAL 215 (347)
T ss_pred ccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEe
Confidence 9999999999876655431 111 24678888887777788
Q ss_pred ecCCCeEEEEeCCCC--ceEEEecCCccccc-cCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 219 GSEDGTARIWDCKSG--KCIKVIDPVKDKQL-KGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 219 ~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
|+.+|.+.|..+..+ +.-..++.|..... .+.--.|++++|+|.-..|+|++.||+..+||
T Consensus 216 GsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 216 GSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred eeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEec
Confidence 888998888888776 33344443332111 11134689999999999999999999999998
No 102
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=3.8e-29 Score=197.20 Aligned_cols=198 Identities=17% Similarity=0.254 Sum_probs=175.2
Q ss_pred eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643 18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK 97 (279)
Q Consensus 18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 97 (279)
+..+.+|..+|.++.|++ ...+|++|+.+|+|++||++. ...++++.+|...+.++.
T Consensus 63 i~S~~~hespIeSl~f~~----~E~LlaagsasgtiK~wDlee-------------------Ak~vrtLtgh~~~~~sv~ 119 (825)
T KOG0267|consen 63 ITSLTGHESPIESLTFDT----SERLLAAGSASGTIKVWDLEE-------------------AKIVRTLTGHLLNITSVD 119 (825)
T ss_pred hheeeccCCcceeeecCc----chhhhcccccCCceeeeehhh-------------------hhhhhhhhccccCcceee
Confidence 446789999999999999 889999999999999999998 677889999999999999
Q ss_pred ecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe
Q 023643 98 FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA 177 (279)
Q Consensus 98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 177 (279)
|+|-+. ++++|+.|+-+++||++. ..+...+.+ +.. .+.++.|+|+|++++++
T Consensus 120 f~P~~~--~~a~gStdtd~~iwD~Rk---~Gc~~~~~s-~~~---------------------vv~~l~lsP~Gr~v~~g 172 (825)
T KOG0267|consen 120 FHPYGE--FFASGSTDTDLKIWDIRK---KGCSHTYKS-HTR---------------------VVDVLRLSPDGRWVASG 172 (825)
T ss_pred eccceE--Eeccccccccceehhhhc---cCceeeecC-Ccc---------------------eeEEEeecCCCceeecc
Confidence 999998 999999999999999763 244444444 222 26899999999999999
Q ss_pred cCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEE
Q 023643 178 AGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCI 257 (279)
Q Consensus 178 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 257 (279)
+.|..+++||+..|+....|+.|.+.+..+.|+|..-++++|+.|+++++||+++-+.+... ......|.+.
T Consensus 173 ~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~--------~~~~~~v~~~ 244 (825)
T KOG0267|consen 173 GEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSG--------KPETDGVRSL 244 (825)
T ss_pred CCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeecc--------CCccCCceee
Confidence 99999999999999999999999999999999999999999999999999999988877776 3446789999
Q ss_pred EEcCCCCEEEEEcCcc
Q 023643 258 TLDASESWLVRVRATN 273 (279)
Q Consensus 258 ~~~~~~~~l~~~~~d~ 273 (279)
+|+|++..+++|....
T Consensus 245 ~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 245 AFNPDGKIVLSGEQIS 260 (825)
T ss_pred eecCCceeeecCchhh
Confidence 9999999999886543
No 103
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.9e-28 Score=174.99 Aligned_cols=230 Identities=20% Similarity=0.271 Sum_probs=179.1
Q ss_pred cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEE
Q 023643 16 SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYD 95 (279)
Q Consensus 16 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 95 (279)
...+.+.+|.+.|+.++-.. ....+.+++.|.+.+||.+++ +.++..+.+|.+.|++
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~----tqpi~gtASADhTA~iWs~Es-------------------g~CL~~Y~GH~GSVNs 195 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADS----TQPICGTASADHTARIWSLES-------------------GACLATYTGHTGSVNS 195 (481)
T ss_pred eehhhhcccccceeeehhhc----CCcceeecccccceeEEeecc-------------------ccceeeecccccceee
Confidence 55678899999999999887 667999999999999999999 7888999999999999
Q ss_pred EEecCCCCceEEEEeeCCCcEEEeecCCC----c-------cCcceeeeccCcccceE-EeecCCCC--Ccc-ccCCCCC
Q 023643 96 VKFYGGNEDALLLSCGDDGRICGWRWKEF----T-------ESKVPINLQGNHVKPVL-DLVNHQHK--GPW-GALSPVP 160 (279)
Q Consensus 96 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~----~-------~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~-~~~~~~~ 160 (279)
+.|++.+. ++++++.|++-.||...-. . ..+........+....- +.....+. .|. ....+..
T Consensus 196 ikfh~s~~--L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~ 273 (481)
T KOG0300|consen 196 IKFHNSGL--LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRA 273 (481)
T ss_pred EEeccccc--eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecccc
Confidence 99999998 9999999999999983210 0 00000000000000000 00000000 011 1123445
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC-ceEEEe
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG-KCIKVI 239 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~ 239 (279)
.|.+..|-..++.+++++.|.+-.+||+++++++..+.+|...++.++-+|..+++++.+.|.+.++||++.. +.+..+
T Consensus 274 vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VF 353 (481)
T KOG0300|consen 274 VVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVF 353 (481)
T ss_pred ceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeee
Confidence 5788889999999999999999999999999999999999999999999999999999999999999999842 344455
Q ss_pred cCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 240 DPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 240 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+|...|+++.|..+. .+++|+.|.+|++||
T Consensus 354 --------QGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWd 384 (481)
T KOG0300|consen 354 --------QGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWD 384 (481)
T ss_pred --------cccccceeEEEEecCC-ceeecCCCceEEEee
Confidence 7999999999998765 489999999999997
No 104
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4e-28 Score=192.77 Aligned_cols=220 Identities=18% Similarity=0.238 Sum_probs=174.5
Q ss_pred CCceeeecccc-ccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 2 CGDSTNWDEDA-YRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 2 dG~v~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.|.|.+||+.. .+.+.+..+..|...+.++.|++. ..++|++|+.||+|++||++. .
T Consensus 109 nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~t---ep~iliSGSQDg~vK~~DlR~-------------------~ 166 (839)
T KOG0269|consen 109 NGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHST---EPNILISGSQDGTVKCWDLRS-------------------K 166 (839)
T ss_pred CCcEEEEecCccccchhhhHhhhhccceeeeeeccC---CccEEEecCCCceEEEEeeec-------------------c
Confidence 58999999876 233556788999999999999995 889999999999999999998 4
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
+...++.+....|..+.|+|... ++|+++...|.+++||++.... ....+. +|.+
T Consensus 167 ~S~~t~~~nSESiRDV~fsp~~~-~~F~s~~dsG~lqlWDlRqp~r--~~~k~~----------------------AH~G 221 (839)
T KOG0269|consen 167 KSKSTFRSNSESIRDVKFSPGYG-NKFASIHDSGYLQLWDLRQPDR--CEKKLT----------------------AHNG 221 (839)
T ss_pred cccccccccchhhhceeeccCCC-ceEEEecCCceEEEeeccCchh--HHHHhh----------------------cccC
Confidence 55677788888999999999765 6999999999999999975321 112221 2223
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec-CCcceEEEEEcCCC-cEEEEec--CCCeEEEEeCCCCc-e
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG-HSDYLHCIVARNST-NQIVTGS--EDGTARIWDCKSGK-C 235 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~-~~l~~~~--~d~~i~vwd~~~~~-~ 235 (279)
.|.|+.|+|++.+||+|+.|+.|+|||..+.+......- ...+|.+++|-|.. ..|++++ .|-.|+|||++..- +
T Consensus 222 pV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 222 PVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP 301 (839)
T ss_pred ceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccccc
Confidence 478999999999999999999999999987654433332 34789999999975 4567665 47889999998653 3
Q ss_pred EEEecCCccccccCcceeeeEEEEcC-CCCEEEEEcCcceEE
Q 023643 236 IKVIDPVKDKQLKGVISCVSCITLDA-SESWLVRVRATNYVI 276 (279)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~ 276 (279)
..++ ..|+..++.++|.. |...|.+++.||+|.
T Consensus 302 ~~t~--------~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 302 YATF--------LEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred ceee--------eccCccccceeccCCCceeeEeecCccHHH
Confidence 3444 68899999999976 567788999999764
No 105
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=5.3e-28 Score=184.21 Aligned_cols=214 Identities=15% Similarity=0.170 Sum_probs=163.8
Q ss_pred eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643 19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF 98 (279)
Q Consensus 19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 98 (279)
...++|...+++-+|+|. +...+++++.||++|||+++....... ++.. ....+..-+++.++|
T Consensus 262 ~nTKGHia~lt~g~whP~---~k~~FlT~s~DgtlRiWdv~~~k~q~q----------Vik~---k~~~g~Rv~~tsC~~ 325 (641)
T KOG0772|consen 262 YNTKGHIAELTCGCWHPD---NKEEFLTCSYDGTLRIWDVNNTKSQLQ----------VIKT---KPAGGKRVPVTSCAW 325 (641)
T ss_pred hccCCceeeeeccccccC---cccceEEecCCCcEEEEecCCchhhee----------EEee---ccCCCcccCceeeec
Confidence 345789999999999995 778899999999999999987532211 1101 111234567899999
Q ss_pred cCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec
Q 023643 99 YGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA 178 (279)
Q Consensus 99 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 178 (279)
+|+++ .||+|..||+|.+|+..... ......+...|.. ...|+||+|+++|++|++-+
T Consensus 326 nrdg~--~iAagc~DGSIQ~W~~~~~~-v~p~~~vk~AH~~-------------------g~~Itsi~FS~dg~~LlSRg 383 (641)
T KOG0772|consen 326 NRDGK--LIAAGCLDGSIQIWDKGSRT-VRPVMKVKDAHLP-------------------GQDITSISFSYDGNYLLSRG 383 (641)
T ss_pred CCCcc--hhhhcccCCceeeeecCCcc-cccceEeeeccCC-------------------CCceeEEEeccccchhhhcc
Confidence 99998 99999999999999975321 1111122211111 11489999999999999999
Q ss_pred CCCeEEEEecCCC-cEEEEeecC--CcceEEEEEcCCCcEEEEec------CCCeEEEEeCCCCceEEEecCCccccccC
Q 023643 179 GDSCAYCWDVESS-RIKMVFKGH--SDYLHCIVARNSTNQIVTGS------EDGTARIWDCKSGKCIKVIDPVKDKQLKG 249 (279)
Q Consensus 179 ~d~~i~i~d~~~~-~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 249 (279)
.|+++++||+++. +++....+- .-+-+.++|+|+.++|++|. ..|.+.+||..+-+.++.+. -
T Consensus 384 ~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~--------i 455 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID--------I 455 (641)
T ss_pred CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec--------C
Confidence 9999999999974 566655442 23457889999999999986 36789999999999999984 4
Q ss_pred cceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 250 VISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 250 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
....|..+.|+|.-+.|.+|+.||++++|
T Consensus 456 ~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 456 STASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred CCceEEEEeecchhhheeeecCCCceEEE
Confidence 46788999999998889999999999875
No 106
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.7e-28 Score=194.83 Aligned_cols=200 Identities=18% Similarity=0.311 Sum_probs=158.0
Q ss_pred eEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEE
Q 023643 28 VFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALL 107 (279)
Q Consensus 28 v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 107 (279)
+..+.|... +.++||+++..|.|.+||++.... ...+..|..|+..+++++|++... ++|
T Consensus 90 ~~DVkW~~~---~~NlIAT~s~nG~i~vWdlnk~~r----------------nk~l~~f~EH~Rs~~~ldfh~tep-~il 149 (839)
T KOG0269|consen 90 AADVKWGQL---YSNLIATCSTNGVISVWDLNKSIR----------------NKLLTVFNEHERSANKLDFHSTEP-NIL 149 (839)
T ss_pred hhhcccccc---hhhhheeecCCCcEEEEecCcccc----------------chhhhHhhhhccceeeeeeccCCc-cEE
Confidence 445677753 789999999999999999986310 344567889999999999999887 699
Q ss_pred EEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC-CCCeEEEecCCCeEEEE
Q 023643 108 LSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP-QGGAIFSAAGDSCAYCW 186 (279)
Q Consensus 108 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~ 186 (279)
++||.||+|++||++......... ++. ..|+.+.|+| .+..++++...|.+.+|
T Consensus 150 iSGSQDg~vK~~DlR~~~S~~t~~---~nS----------------------ESiRDV~fsp~~~~~F~s~~dsG~lqlW 204 (839)
T KOG0269|consen 150 ISGSQDGTVKCWDLRSKKSKSTFR---SNS----------------------ESIRDVKFSPGYGNKFASIHDSGYLQLW 204 (839)
T ss_pred EecCCCceEEEEeeeccccccccc---ccc----------------------hhhhceeeccCCCceEEEecCCceEEEe
Confidence 999999999999998643322222 211 1378999998 45688999999999999
Q ss_pred ecCCC-cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCC-
Q 023643 187 DVESS-RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASES- 264 (279)
Q Consensus 187 d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 264 (279)
|++.. ++...+..|.++|.|+.|+|++.+||+|+.|+.|+|||..+++...... .....+|.+++|-|...
T Consensus 205 DlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~t-------InTiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 205 DLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHT-------INTIAPVGRVKWRPARSY 277 (839)
T ss_pred eccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeE-------EeecceeeeeeeccCccc
Confidence 99975 5667888999999999999999999999999999999998654332221 12346899999999765
Q ss_pred EEEEEc--CcceEEeCC
Q 023643 265 WLVRVR--ATNYVILFS 279 (279)
Q Consensus 265 ~l~~~~--~d~~i~~wd 279 (279)
.||+++ .|-.|+|||
T Consensus 278 hLAtcsmv~dtsV~VWD 294 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWD 294 (839)
T ss_pred hhhhhhccccceEEEEe
Confidence 466665 388999997
No 107
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=1.4e-26 Score=185.41 Aligned_cols=252 Identities=15% Similarity=0.249 Sum_probs=192.4
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCC-EEEEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPD-TIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG 79 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 79 (279)
++|+|.++|++.. +.+.+++...++|++++|.. ||+ ++|+|+..|.+-+||++.
T Consensus 222 ~~G~ViifNlK~d--kil~sFk~d~g~VtslSFrt----DG~p~las~~~~G~m~~wDLe~------------------- 276 (910)
T KOG1539|consen 222 ENGTVIIFNLKFD--KILMSFKQDWGRVTSLSFRT----DGNPLLASGRSNGDMAFWDLEK------------------- 276 (910)
T ss_pred cCceEEEEEcccC--cEEEEEEccccceeEEEecc----CCCeeEEeccCCceEEEEEcCC-------------------
Confidence 5899999999987 45778885569999999998 555 677788889999999997
Q ss_pred cccccccc-CCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEe--------------
Q 023643 80 IEPDGFLH-GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDL-------------- 144 (279)
Q Consensus 80 ~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 144 (279)
.+.+..++ .|.+.|....|.|..+ .+++++.|.++++|=.++...........+.|..|-.++
T Consensus 277 kkl~~v~~nah~~sv~~~~fl~~ep--Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~ 354 (910)
T KOG1539|consen 277 KKLINVTRNAHYGSVTGATFLPGEP--VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAK 354 (910)
T ss_pred CeeeeeeeccccCCcccceecCCCc--eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecc
Confidence 34444454 6989999999999988 999999999999887663322222222211121111110
Q ss_pred -----------------------------------------------ec-CCCCCcccc---------------------
Q 023643 145 -----------------------------------------------VN-HQHKGPWGA--------------------- 155 (279)
Q Consensus 145 -----------------------------------------------~~-~~~~~~~~~--------------------- 155 (279)
.. ......|+-
T Consensus 355 ~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~ 434 (910)
T KOG1539|consen 355 QDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTS 434 (910)
T ss_pred cCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccc
Confidence 00 000000000
Q ss_pred ----CCC------CCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEe---ecCCcceEEEEEcCCCcEEEEecCC
Q 023643 156 ----LSP------VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVF---KGHSDYLHCIVARNSTNQIVTGSED 222 (279)
Q Consensus 156 ----~~~------~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~~~~~d 222 (279)
+.+ ...+++++.++.|+..+.|+..|.|-+|++++|....+| ..|.++|+.++...-++.+++++.+
T Consensus 435 G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~ 514 (910)
T KOG1539|consen 435 GRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGAD 514 (910)
T ss_pred ccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCc
Confidence 111 246789999999999999999999999999999988888 5799999999999889999999999
Q ss_pred CeEEEEeCCCCceEEEecCCcc---------------------------------ccccCcceeeeEEEEcCCCCEEEEE
Q 023643 223 GTARIWDCKSGKCIKVIDPVKD---------------------------------KQLKGVISCVSCITLDASESWLVRV 269 (279)
Q Consensus 223 ~~i~vwd~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~ 269 (279)
|.+++||.....++..+..... ..+.+|...|+.++|||||++|+++
T Consensus 515 Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisa 594 (910)
T KOG1539|consen 515 GILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISA 594 (910)
T ss_pred ceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEe
Confidence 9999999988776655543221 2567899999999999999999999
Q ss_pred cCcceEEeCC
Q 023643 270 RATNYVILFS 279 (279)
Q Consensus 270 ~~d~~i~~wd 279 (279)
+.|++|++||
T Consensus 595 smD~tIr~wD 604 (910)
T KOG1539|consen 595 SMDSTIRTWD 604 (910)
T ss_pred ecCCcEEEEe
Confidence 9999999998
No 108
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=2.9e-29 Score=197.87 Aligned_cols=202 Identities=21% Similarity=0.308 Sum_probs=179.3
Q ss_pred eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEec
Q 023643 20 EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFY 99 (279)
Q Consensus 20 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 99 (279)
.+..|...|.++..-. .++.+++|+.|..+-+|.+.. ...+..+.+|+.+|.++.|+
T Consensus 23 ~~~~hsaav~~lk~~~----s~r~~~~Gg~~~k~~L~~i~k-------------------p~~i~S~~~hespIeSl~f~ 79 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRK----SSRSLVTGGEDEKVNLWAIGK-------------------PNAITSLTGHESPIESLTFD 79 (825)
T ss_pred hhhhhhhhhceeeeec----cceeeccCCCceeeccccccC-------------------CchhheeeccCCcceeeecC
Confidence 3446788888888855 788999999999999999987 56667789999999999999
Q ss_pred CCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC
Q 023643 100 GGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG 179 (279)
Q Consensus 100 ~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 179 (279)
+... +|++|+.+|+|++||++.. +....+.++.. .+.++.|+|-+.+.+.|+.
T Consensus 80 ~~E~--LlaagsasgtiK~wDleeA---k~vrtLtgh~~----------------------~~~sv~f~P~~~~~a~gSt 132 (825)
T KOG0267|consen 80 TSER--LLAAGSASGTIKVWDLEEA---KIVRTLTGHLL----------------------NITSVDFHPYGEFFASGST 132 (825)
T ss_pred cchh--hhcccccCCceeeeehhhh---hhhhhhhcccc----------------------CcceeeeccceEEeccccc
Confidence 9987 9999999999999998643 33444444332 2678999999999999999
Q ss_pred CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEE
Q 023643 180 DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITL 259 (279)
Q Consensus 180 d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 259 (279)
|+.+++||++..-+.+.+++|...+..++|+|+|++++.|+.|.+++|||+..|+....| ..|...+..+.|
T Consensus 133 dtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef--------~~~e~~v~sle~ 204 (825)
T KOG0267|consen 133 DTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEF--------KSHEGKVQSLEF 204 (825)
T ss_pred cccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccc--------cccccccccccc
Confidence 999999999988899999999999999999999999999999999999999999999998 788899999999
Q ss_pred cCCCCEEEEEcCcceEEeCC
Q 023643 260 DASESWLVRVRATNYVILFS 279 (279)
Q Consensus 260 ~~~~~~l~~~~~d~~i~~wd 279 (279)
+|..-++++|+.|+++++||
T Consensus 205 hp~e~Lla~Gs~d~tv~f~d 224 (825)
T KOG0267|consen 205 HPLEVLLAPGSSDRTVRFWD 224 (825)
T ss_pred CchhhhhccCCCCceeeeec
Confidence 99999999999999999997
No 109
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=189.02 Aligned_cols=229 Identities=20% Similarity=0.238 Sum_probs=189.3
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
.|++|||++...+. +...+.|..+|.|+.|+-. ....++||+++.|..|+|||+... ..
T Consensus 480 ~GnlrVy~Lq~l~~--~~~~eAHesEilcLeyS~p-~~~~kLLASasrdRlIHV~Dv~rn------------------y~ 538 (1080)
T KOG1408|consen 480 GGNLRVYDLQELEY--TCFMEAHESEILCLEYSFP-VLTNKLLASASRDRLIHVYDVKRN------------------YD 538 (1080)
T ss_pred cCceEEEEehhhhh--hhheecccceeEEEeecCc-hhhhHhhhhccCCceEEEEecccc------------------cc
Confidence 48999999988754 5567889999999999852 124578999999999999999875 77
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
++.++.+|...|+++.|...+-+..+++++.|..|.+ +........ ......++... ...
T Consensus 539 l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g-~~f~r~t~t~~------------------ktT 598 (1080)
T KOG1408|consen 539 LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSG-RLFPRHTQTLS------------------KTT 598 (1080)
T ss_pred hhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCc-eeccccccccc------------------cce
Confidence 8899999999999999998875458999999988764 332111111 11111111110 113
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec---CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG---HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV 238 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 238 (279)
++.++..|..+++++++.|..|+|||+.+++.++.|++ |++..-.+...|.|.||++.+.|.++.++|.-+|+++.+
T Consensus 599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~ 678 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ 678 (1080)
T ss_pred EEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence 68899999999999999999999999999999999985 667788899999999999999999999999999999999
Q ss_pred ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
. .+|...|+++.|.+|-++|++.+.||.|.+|.
T Consensus 679 m--------~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 679 M--------TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred h--------cCcchheeeeeecccchhheeecCCceEEEEE
Confidence 8 79999999999999999999999999999993
No 110
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.3e-26 Score=165.94 Aligned_cols=253 Identities=14% Similarity=0.134 Sum_probs=176.4
Q ss_pred CCCceeeecccc--ccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643 1 MCGDSTNWDEDA--YRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL 78 (279)
Q Consensus 1 ~dG~v~iw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 78 (279)
.|++|+|||.+. +...+....+.|.+.|..+.|.+. .-|+.+|+++.|+++.||.-........ . .
T Consensus 33 sDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhP--EfGqvvA~cS~Drtv~iWEE~~~~~~~~--------~--~ 100 (361)
T KOG2445|consen 33 SDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHP--EFGQVVATCSYDRTVSIWEEQEKSEEAH--------G--R 100 (361)
T ss_pred CCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCc--cccceEEEEecCCceeeeeecccccccc--------c--c
Confidence 489999999543 334566788999999999999653 3789999999999999998742111000 0 0
Q ss_pred eccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643 79 GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP 158 (279)
Q Consensus 79 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (279)
......++......|+.++|.|...+-.|++++.||.+|||+.-+...... -.+. +..+.+.. + .-.+
T Consensus 101 ~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~-W~Lq-~Ei~~~~~---p-------p~~~ 168 (361)
T KOG2445|consen 101 RWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ-WTLQ-HEIQNVID---P-------PGKN 168 (361)
T ss_pred eeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc-chhh-hhhhhccC---C-------cccc
Confidence 023445666778899999999987777999999999999999643211100 0000 00000000 0 0001
Q ss_pred CCCceeEEEcCC---CCeEEEecCC-----CeEEEEecCCC----cEEEEeecCCcceEEEEEcCC-C---cEEEEecCC
Q 023643 159 VPENNAIAVDPQ---GGAIFSAAGD-----SCAYCWDVESS----RIKMVFKGHSDYLHCIVARNS-T---NQIVTGSED 222 (279)
Q Consensus 159 ~~~i~~~~~~~~---~~~l~~~~~d-----~~i~i~d~~~~----~~~~~~~~~~~~i~~i~~~~~-~---~~l~~~~~d 222 (279)
.....|+.|+|. .++|++|+.+ +.++||....+ ..+.++.+|..+|++++|.|+ | ..|++++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 113579999984 4578888765 47888876543 345567789999999999995 3 469999999
Q ss_pred CeEEEEeCCCC------------ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 223 GTARIWDCKSG------------KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 223 ~~i~vwd~~~~------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
| |+||.++.. .....++.+....+.+|+..|+.+.|+-.|..|++.+.||.|++|
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLW 315 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLW 315 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeeh
Confidence 9 999998731 111122222223458999999999999999999999999999999
No 111
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.1e-28 Score=168.98 Aligned_cols=209 Identities=18% Similarity=0.227 Sum_probs=161.0
Q ss_pred eecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCC
Q 023643 22 EILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGG 101 (279)
Q Consensus 22 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 101 (279)
..|.+.|..+...- .|.+|||+++|++|+|+.++.... ..++.++.+|++||..++|...
T Consensus 8 t~H~D~IHda~lDy----ygkrlATcsSD~tVkIf~v~~n~~----------------s~ll~~L~Gh~GPVwqv~wahP 67 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDY----YGKRLATCSSDGTVKIFEVRNNGQ----------------SKLLAELTGHSGPVWKVAWAHP 67 (299)
T ss_pred hhhhhhhhHhhhhh----hcceeeeecCCccEEEEEEcCCCC----------------ceeeeEecCCCCCeeEEeeccc
Confidence 45777777777666 789999999999999999987531 2567889999999999999763
Q ss_pred CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC--CeEEEecC
Q 023643 102 NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG--GAIFSAAG 179 (279)
Q Consensus 102 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~ 179 (279)
..+.+|++++.||.|.||.-... .-....... .+...|++++|.|.+ -.|++++.
T Consensus 68 k~G~iLAScsYDgkVIiWke~~g-~w~k~~e~~----------------------~h~~SVNsV~wapheygl~LacasS 124 (299)
T KOG1332|consen 68 KFGTILASCSYDGKVIIWKEENG-RWTKAYEHA----------------------AHSASVNSVAWAPHEYGLLLACASS 124 (299)
T ss_pred ccCcEeeEeecCceEEEEecCCC-chhhhhhhh----------------------hhcccceeecccccccceEEEEeeC
Confidence 33349999999999999995432 111111111 122348999999854 48899999
Q ss_pred CCeEEEEecCCC---cEEEEeecCCcceEEEEEcCC---C-----------cEEEEecCCCeEEEEeCCCCceEEEecCC
Q 023643 180 DSCAYCWDVESS---RIKMVFKGHSDYLHCIVARNS---T-----------NQIVTGSEDGTARIWDCKSGKCIKVIDPV 242 (279)
Q Consensus 180 d~~i~i~d~~~~---~~~~~~~~~~~~i~~i~~~~~---~-----------~~l~~~~~d~~i~vwd~~~~~~~~~~~~~ 242 (279)
||.|.+.+.++. ........|.-.|++++|.|. | +.|++|+.|+.|+||+..+++-+..-
T Consensus 125 DG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~--- 201 (299)
T KOG1332|consen 125 DGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLER--- 201 (299)
T ss_pred CCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhh---
Confidence 999999988754 233455679999999999985 4 57999999999999999886322111
Q ss_pred ccccccCcceeeeEEEEcCCC----CEEEEEcCcceEEeCC
Q 023643 243 KDKQLKGVISCVSCITLDASE----SWLVRVRATNYVILFS 279 (279)
Q Consensus 243 ~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~~wd 279 (279)
.+.+|...|..++|.|.- .+||+++.||++.||.
T Consensus 202 ---~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 202 ---TLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred ---hhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 137999999999999963 5899999999999983
No 112
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.9e-25 Score=152.46 Aligned_cols=237 Identities=14% Similarity=0.181 Sum_probs=165.6
Q ss_pred cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643 24 LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE 103 (279)
Q Consensus 24 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 103 (279)
....|.+++|+| .|.+.|+|++..+.+|.....-.....-........ .-..+.-+.|.+.|.|.+|+|.++
T Consensus 31 dsqairav~fhp----~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp----~v~~kr~khhkgsiyc~~ws~~ge 102 (350)
T KOG0641|consen 31 DSQAIRAVAFHP----AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPP----SVLCKRNKHHKGSIYCTAWSPCGE 102 (350)
T ss_pred chhheeeEEecC----CCceEEeccCCceEEEEccccccCcccccccccCCC----eEEeeeccccCccEEEEEecCccC
Confidence 567899999999 899999999999999876643211110000000000 011123346899999999999998
Q ss_pred ceEEEEeeCCCcEEEeecCCCccCc----ceeeeccCcccceEEeecCCCCCccc-----------------------cC
Q 023643 104 DALLLSCGDDGRICGWRWKEFTESK----VPINLQGNHVKPVLDLVNHQHKGPWG-----------------------AL 156 (279)
Q Consensus 104 ~~~l~s~~~dg~i~iw~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~ 156 (279)
++++|+.|.+|++..++...... ..+.+.......+..+..+...+.+. ..
T Consensus 103 --liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 103 --LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred --eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 99999999999998876432211 11122111111111111111111110 11
Q ss_pred CCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec--C-----CcceEEEEEcCCCcEEEEecCCCeEEEEe
Q 023643 157 SPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG--H-----SDYLHCIVARNSTNQIVTGSEDGTARIWD 229 (279)
Q Consensus 157 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~-----~~~i~~i~~~~~~~~l~~~~~d~~i~vwd 229 (279)
.+.+.|.++ ++=++.++++|+.|.+|++||++-..+++++.. | .+.|.+++..|.|++|++|-.|...-+||
T Consensus 181 ghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 181 GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD 259 (350)
T ss_pred CCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence 222334443 223567899999999999999999888887642 2 35789999999999999999999999999
Q ss_pred CCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 230 CKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
++-++.++.+ ..|...|.++.|+|...||++++.|..|++=|
T Consensus 260 irg~r~iq~f--------~phsadir~vrfsp~a~yllt~syd~~ikltd 301 (350)
T KOG0641|consen 260 IRGGRMIQRF--------HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTD 301 (350)
T ss_pred eeCCceeeee--------CCCccceeEEEeCCCceEEEEecccceEEEee
Confidence 9999999999 67888999999999999999999999998743
No 113
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.2e-27 Score=178.54 Aligned_cols=211 Identities=17% Similarity=0.299 Sum_probs=169.6
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
.|.+++|.+.++. .+..+..|-..|+++.|+- |+.+|++|+.||.|.+|.+..-..... +. ...
T Consensus 102 ~g~lYlWelssG~--LL~v~~aHYQ~ITcL~fs~----dgs~iiTgskDg~V~vW~l~~lv~a~~--------~~--~~~ 165 (476)
T KOG0646|consen 102 SGNLYLWELSSGI--LLNVLSAHYQSITCLKFSD----DGSHIITGSKDGAVLVWLLTDLVSADN--------DH--SVK 165 (476)
T ss_pred cCcEEEEEecccc--HHHHHHhhccceeEEEEeC----CCcEEEecCCCccEEEEEEEeeccccc--------CC--Ccc
Confidence 4789999999985 4777889999999999999 999999999999999999865211100 00 157
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
+.+.+..|.-+|+++...+.+...+++|+|.|.++++||+..+ .......-. ..
T Consensus 166 p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---~LLlti~fp-----------------------~s 219 (476)
T KOG0646|consen 166 PLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG---VLLLTITFP-----------------------SS 219 (476)
T ss_pred ceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc---eeeEEEecC-----------------------Cc
Confidence 8889999999999999888755569999999999999998653 221111110 13
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCC----------------cEEEEeecCCc--ceEEEEEcCCCcEEEEecCCC
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESS----------------RIKMVFKGHSD--YLHCIVARNSTNQIVTGSEDG 223 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----------------~~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~d~ 223 (279)
+.+++.+|.+..+++|+.+|.|.+.++... ..+..+.+|.+ .|+|++.+-||..|++|+.||
T Consensus 220 i~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg 299 (476)
T KOG0646|consen 220 IKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDG 299 (476)
T ss_pred ceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCC
Confidence 789999999999999999999998877532 34556778888 999999999999999999999
Q ss_pred eEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCC
Q 023643 224 TARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS 262 (279)
Q Consensus 224 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 262 (279)
.++|||+.+.++++++. ...++|+.+.+.|-
T Consensus 300 ~VcvWdi~S~Q~iRtl~--------~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 300 KVCVWDIYSKQCIRTLQ--------TSKGPVTNLQINPL 330 (476)
T ss_pred CEEEEecchHHHHHHHh--------hhccccceeEeecc
Confidence 99999999999998873 34567777777553
No 114
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.96 E-value=5.1e-27 Score=172.35 Aligned_cols=223 Identities=17% Similarity=0.205 Sum_probs=167.1
Q ss_pred eeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecC
Q 023643 21 REILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYG 100 (279)
Q Consensus 21 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 100 (279)
...|.+.+..+.-++. .+..+.|+-+..|.|+||++........ .+.........+++.++.+|.+.-++|+|+|
T Consensus 147 ~i~h~g~~NRvr~~~~--~~~~~~aswse~G~V~Vw~l~~~l~~l~---~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp 221 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRL--GNEVLCASWSENGRVQVWDLAPHLNALS---EPGLEVKDSEFRPLFTFNGHKGEGYGLDWSP 221 (440)
T ss_pred ccccccccceeeeccc--CCcceeeeecccCcEEEEEchhhhhhhc---CccccccccccCceEEecccCccceeeeccc
Confidence 3457788888887772 1446677778899999999975321110 0000111122688899999999999999999
Q ss_pred CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCC-eEEEecC
Q 023643 101 GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG-AIFSAAG 179 (279)
Q Consensus 101 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~ 179 (279)
-.. ..|+||..-+.|++|...++.=......+.+ |...|..+.|+|... .|++++.
T Consensus 222 ~~~-g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~g----------------------H~~SVEDLqWSptE~~vfaScS~ 278 (440)
T KOG0302|consen 222 IKT-GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTG----------------------HTKSVEDLQWSPTEDGVFASCSC 278 (440)
T ss_pred ccc-cccccCccccceEeeeeccCceeecCccccc----------------------cccchhhhccCCccCceEEeeec
Confidence 544 2689998899999999765211111112222 233478999999665 7899999
Q ss_pred CCeEEEEecCCCc--EEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC---CceEEEecCCccccccCcceee
Q 023643 180 DSCAYCWDVESSR--IKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS---GKCIKVIDPVKDKQLKGVISCV 254 (279)
Q Consensus 180 d~~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~v 254 (279)
||+|+|||+|.+. .....+.|.+-|..|.|+....+|++|+.||+++|||+|+ ++++..+ ..|..+|
T Consensus 279 DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f--------k~Hk~pI 350 (440)
T KOG0302|consen 279 DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATF--------KYHKAPI 350 (440)
T ss_pred CceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeE--------EeccCCe
Confidence 9999999999872 2223478999999999999877999999999999999986 5566666 7899999
Q ss_pred eEEEEcCC-CCEEEEEcCcceEEeCC
Q 023643 255 SCITLDAS-ESWLVRVRATNYVILFS 279 (279)
Q Consensus 255 ~~~~~~~~-~~~l~~~~~d~~i~~wd 279 (279)
+++.|+|. ...|++++.|..|.+||
T Consensus 351 tsieW~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 351 TSIEWHPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred eEEEeccccCceEEeccCCCcEEEEE
Confidence 99999995 56788899999999997
No 115
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=3.4e-27 Score=177.17 Aligned_cols=216 Identities=14% Similarity=0.186 Sum_probs=168.6
Q ss_pred cceeeeeecccceEEEEECCCCCCCC-CEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeE
Q 023643 16 SILKEREILTRTVFRTVWGPSKDGSP-DTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAY 94 (279)
Q Consensus 16 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 94 (279)
......+.+...|++++|+|. .. +++|+|...|+|-+||+.+.+.. ...+..+..|.++|.
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt---~~~~lva~GdK~G~VG~Wn~~~~~~d---------------~d~v~~f~~hs~~Vs 238 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPT---ENRKLVAVGDKGGQVGLWNFGTQEKD---------------KDGVYLFTPHSGPVS 238 (498)
T ss_pred eecceeEecccceEEEEeccc---CcceEEEEccCCCcEEEEecCCCCCc---------------cCceEEeccCCcccc
Confidence 445567788999999999995 34 78999999999999999642211 233456678999999
Q ss_pred EEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeE
Q 023643 95 DVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAI 174 (279)
Q Consensus 95 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 174 (279)
+|.|+|... ..+++.|.||+|++-|++.... .......... .....+.|+.+...+
T Consensus 239 ~l~F~P~n~-s~i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~----------------------~~fs~~d~~~e~~~v 294 (498)
T KOG4328|consen 239 GLKFSPANT-SQIYSSSYDGTIRLQDFEGNIS-EEVLSLDTDN----------------------IWFSSLDFSAESRSV 294 (498)
T ss_pred ceEecCCCh-hheeeeccCceeeeeeecchhh-HHHhhcCccc----------------------eeeeeccccCCCccE
Confidence 999999876 5899999999999999864311 1111111110 024677888888888
Q ss_pred EEecCCCeEEEEecCCCcE-EEEeecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCceEEE--ecCCccccccCc
Q 023643 175 FSAAGDSCAYCWDVESSRI-KMVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKCIKV--IDPVKDKQLKGV 250 (279)
Q Consensus 175 ~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~~ 250 (279)
+.+.+=|...+||++++.. ...+..|...|..|+++|. ..+|+++|.|++.+|||+|....... +.. ..|
T Consensus 295 l~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst------~~H 368 (498)
T KOG4328|consen 295 LFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLST------LPH 368 (498)
T ss_pred EEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceec------ccc
Confidence 8888888999999998654 6667778889999999995 67799999999999999997443332 211 578
Q ss_pred ceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 251 ISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 251 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
...|.++.|||.+-.|+|.+.|..|+|||
T Consensus 369 rrsV~sAyFSPs~gtl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 369 RRSVNSAYFSPSGGTLLTTCQDNEIRVFD 397 (498)
T ss_pred cceeeeeEEcCCCCceEeeccCCceEEee
Confidence 89999999999988899999999999997
No 116
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.6e-27 Score=173.76 Aligned_cols=206 Identities=14% Similarity=0.153 Sum_probs=170.1
Q ss_pred eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643 18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK 97 (279)
Q Consensus 18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 97 (279)
.+.+..|.++|+-+.||+ +|++||+++.|.+..+|++..... .+...++.+|..+|.-+.
T Consensus 217 ~qil~~htdEVWfl~FS~----nGkyLAsaSkD~Taiiw~v~~d~~----------------~kl~~tlvgh~~~V~yi~ 276 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSH----NGKYLASASKDSTAIIWIVVYDVH----------------FKLKKTLVGHSQPVSYIM 276 (519)
T ss_pred hhhHhhCCCcEEEEEEcC----CCeeEeeccCCceEEEEEEecCcc----------------eeeeeeeecccCceEEEE
Confidence 446678999999999999 999999999999999999875321 345678889999999999
Q ss_pred ecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe
Q 023643 98 FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA 177 (279)
Q Consensus 98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 177 (279)
|+|+.. +|++|+.|..+++||+.++... ..+.... ...+.+++|.||+..+++|
T Consensus 277 wSPDdr--yLlaCg~~e~~~lwDv~tgd~~---~~y~~~~---------------------~~S~~sc~W~pDg~~~V~G 330 (519)
T KOG0293|consen 277 WSPDDR--YLLACGFDEVLSLWDVDTGDLR---HLYPSGL---------------------GFSVSSCAWCPDGFRFVTG 330 (519)
T ss_pred ECCCCC--eEEecCchHheeeccCCcchhh---hhcccCc---------------------CCCcceeEEccCCceeEec
Confidence 999998 9999999999999998764221 1111111 0136899999999999999
Q ss_pred cCCCeEEEEecCCCcEEEEeecCC-cceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeE
Q 023643 178 AGDSCAYCWDVESSRIKMVFKGHS-DYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSC 256 (279)
Q Consensus 178 ~~d~~i~i~d~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 256 (279)
+.|+.|..||++ |..+...++-. ..|.+++..+||+++++.+.|..|++|+..+......+ ....+|++
T Consensus 331 s~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li---------se~~~its 400 (519)
T KOG0293|consen 331 SPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI---------SEEQPITS 400 (519)
T ss_pred CCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc---------cccCceeE
Confidence 999999999997 55555555433 56899999999999999999999999998877666554 23357999
Q ss_pred EEEcCCCCEEEEEcCcceEEeCC
Q 023643 257 ITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 257 ~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
++.|.+++++++.=.+..+++||
T Consensus 401 ~~iS~d~k~~LvnL~~qei~LWD 423 (519)
T KOG0293|consen 401 FSISKDGKLALVNLQDQEIHLWD 423 (519)
T ss_pred EEEcCCCcEEEEEcccCeeEEee
Confidence 99999999999999999999997
No 117
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.9e-26 Score=164.57 Aligned_cols=225 Identities=14% Similarity=0.116 Sum_probs=162.2
Q ss_pred eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643 18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK 97 (279)
Q Consensus 18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 97 (279)
+..+++|.+.|++++|+. ||..||+++.|++|++|+++.-+... .+.++.-- .-+-.+.+.
T Consensus 79 ~~~LKgH~~~vt~~~FsS----dGK~lat~~~Dr~Ir~w~~~DF~~~e--------------Hr~~R~nv-e~dhpT~V~ 139 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSS----DGKKLATISGDRSIRLWDVRDFENKE--------------HRCIRQNV-EYDHPTRVV 139 (420)
T ss_pred hhhhhccCCceeeeEEcC----CCceeEEEeCCceEEEEecchhhhhh--------------hhHhhccc-cCCCceEEE
Confidence 446789999999999999 99999999999999999998622110 11111111 112467899
Q ss_pred ecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe
Q 023643 98 FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA 177 (279)
Q Consensus 98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 177 (279)
|.|+-. ..++++-...++++|.+...+.+........ .-.+..+ ..+...+..+.....+.+++++
T Consensus 140 FapDc~-s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~-----~D~~~f~--------~kh~v~~i~iGiA~~~k~imsa 205 (420)
T KOG2096|consen 140 FAPDCK-SVVVSVKRGNKLCVYKLVKKTDGSGSHHFVH-----IDNLEFE--------RKHQVDIINIGIAGNAKYIMSA 205 (420)
T ss_pred ECCCcc-eEEEEEccCCEEEEEEeeecccCCCCccccc-----ccccccc--------hhcccceEEEeecCCceEEEEe
Confidence 999987 4677777788999998754322221111100 0000000 0011124556677778899999
Q ss_pred cCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC---CceEEEecCCccccccCcceee
Q 023643 178 AGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS---GKCIKVIDPVKDKQLKGVISCV 254 (279)
Q Consensus 178 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~v 254 (279)
+.|..|.+|+++ |+.+..+......-+..+.+|+|+++++++..--|+||.+-- |...... ....+.+|...|
T Consensus 206 s~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~---rvf~LkGH~saV 281 (420)
T KOG2096|consen 206 SLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVK---RVFSLKGHQSAV 281 (420)
T ss_pred cCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhh---hhheeccchhhe
Confidence 999999999998 999998887777788899999999999999999999998632 2211110 111248999999
Q ss_pred eEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 255 SCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 255 ~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
..++|+++...++|.|.||+.++||
T Consensus 282 ~~~aFsn~S~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 282 LAAAFSNSSTRAVTVSKDGKWRIWD 306 (420)
T ss_pred eeeeeCCCcceeEEEecCCcEEEee
Confidence 9999999999999999999999997
No 118
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=3.1e-26 Score=183.53 Aligned_cols=216 Identities=20% Similarity=0.260 Sum_probs=175.9
Q ss_pred ceeeeccccccccc--e--eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643 4 DSTNWDEDAYRKSI--L--KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG 79 (279)
Q Consensus 4 ~v~iw~~~~~~~~~--~--~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 79 (279)
.++.|+..+...-. + ..++.....+++++.++ .|++.+.|++.|.|-+|+++++
T Consensus 423 ~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~----CGNF~~IG~S~G~Id~fNmQSG------------------ 480 (910)
T KOG1539|consen 423 SAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF----CGNFVFIGYSKGTIDRFNMQSG------------------ 480 (910)
T ss_pred eEEEEeccCcccccEEecCccccccCcceEEEEEec----cCceEEEeccCCeEEEEEcccC------------------
Confidence 46778876654210 1 11222347899999999 8999999999999999999984
Q ss_pred ccccccc---cCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643 80 IEPDGFL---HGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL 156 (279)
Q Consensus 80 ~~~~~~~---~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (279)
.....+ ..|.++|.+++...-++ .+++++.+|.+++||.... .....+.-..
T Consensus 481 -i~r~sf~~~~ah~~~V~gla~D~~n~--~~vsa~~~Gilkfw~f~~k---~l~~~l~l~~------------------- 535 (910)
T KOG1539|consen 481 -IHRKSFGDSPAHKGEVTGLAVDGTNR--LLVSAGADGILKFWDFKKK---VLKKSLRLGS------------------- 535 (910)
T ss_pred -eeecccccCccccCceeEEEecCCCc--eEEEccCcceEEEEecCCc---ceeeeeccCC-------------------
Confidence 344444 46999999999987776 9999999999999997642 1111221111
Q ss_pred CCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE
Q 023643 157 SPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI 236 (279)
Q Consensus 157 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~ 236 (279)
.+.++..+.....++++..|-.|+++|..+.+.++.|.+|.+.|++++|||+|++|++++.|++|++||+.++.++
T Consensus 536 ----~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 536 ----SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred ----CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee
Confidence 2567778877888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc-ceEEeCC
Q 023643 237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT-NYVILFS 279 (279)
Q Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~wd 279 (279)
..+ .-..+++.+.|+|+|.+|||...| .-|++|.
T Consensus 612 D~~---------~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 612 DGL---------LVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred eeE---------ecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 887 344578999999999999999988 6788883
No 119
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=1.6e-26 Score=161.19 Aligned_cols=181 Identities=19% Similarity=0.272 Sum_probs=147.5
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
+..+||||++... ...+++.+|++.|..+-|+. ..+.+++++.|++||+||.++ +.
T Consensus 121 ekllrvfdln~p~-App~E~~ghtg~Ir~v~wc~----eD~~iLSSadd~tVRLWD~rT-------------------gt 176 (334)
T KOG0278|consen 121 EKLLRVFDLNRPK-APPKEISGHTGGIRTVLWCH----EDKCILSSADDKTVRLWDHRT-------------------GT 176 (334)
T ss_pred HHHhhhhhccCCC-CCchhhcCCCCcceeEEEec----cCceEEeeccCCceEEEEecc-------------------Cc
Confidence 3467899987765 45678899999999999999 778888889999999999999 45
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
.++.+. -..+|+++..++++. +++-...++|++||.......+ .++ .| ..
T Consensus 177 ~v~sL~-~~s~VtSlEvs~dG~---ilTia~gssV~Fwdaksf~~lK---s~k----~P-------------------~n 226 (334)
T KOG0278|consen 177 EVQSLE-FNSPVTSLEVSQDGR---ILTIAYGSSVKFWDAKSFGLLK---SYK----MP-------------------CN 226 (334)
T ss_pred EEEEEe-cCCCCcceeeccCCC---EEEEecCceeEEecccccccee---ecc----Cc-------------------cc
Confidence 555554 345799999999996 5555567899999976532111 111 11 12
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEe-ecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVF-KGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI 236 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~ 236 (279)
|.+.+++|+...+++|+.|..++.||..+++.+..+ ++|.++|.|+.|+|+|...++||.||+|++|....++..
T Consensus 227 V~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 227 VESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred cccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 788899999999999999999999999999999986 899999999999999999999999999999998766544
No 120
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.4e-25 Score=160.67 Aligned_cols=201 Identities=17% Similarity=0.262 Sum_probs=154.4
Q ss_pred ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCC
Q 023643 23 ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGN 102 (279)
Q Consensus 23 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 102 (279)
.....|.++.|+| .++.|++++.||++++|++.. ... ...-.|..++.+.+|.+..
T Consensus 11 pP~d~IS~v~f~~----~~~~LLvssWDgslrlYdv~~-------------------~~l-~~~~~~~~plL~c~F~d~~ 66 (323)
T KOG1036|consen 11 PPEDGISSVKFSP----SSSDLLVSSWDGSLRLYDVPA-------------------NSL-KLKFKHGAPLLDCAFADES 66 (323)
T ss_pred CChhceeeEEEcC----cCCcEEEEeccCcEEEEeccc-------------------hhh-hhheecCCceeeeeccCCc
Confidence 3467899999999 778888888999999999997 222 2233489999999999865
Q ss_pred CceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCe
Q 023643 103 EDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSC 182 (279)
Q Consensus 103 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 182 (279)
.+++|+-||.|+.+|+++..... .+ .|...|+|+.+++....+++|+.|++
T Consensus 67 ---~~~~G~~dg~vr~~Dln~~~~~~-----ig---------------------th~~~i~ci~~~~~~~~vIsgsWD~~ 117 (323)
T KOG1036|consen 67 ---TIVTGGLDGQVRRYDLNTGNEDQ-----IG---------------------THDEGIRCIEYSYEVGCVISGSWDKT 117 (323)
T ss_pred ---eEEEeccCceEEEEEecCCccee-----ec---------------------cCCCceEEEEeeccCCeEEEcccCcc
Confidence 79999999999999997642211 11 12224799999998889999999999
Q ss_pred EEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEE---------------EecCCc----
Q 023643 183 AYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIK---------------VIDPVK---- 243 (279)
Q Consensus 183 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~---------------~~~~~~---- 243 (279)
|++||.+.......+. ....|.++... ++.|+.|+.|..+.+||+++..... .++..+
T Consensus 118 ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~ 194 (323)
T KOG1036|consen 118 IKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVV 194 (323)
T ss_pred EEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEE
Confidence 9999999866666665 34478888765 7899999999999999998743221 111000
Q ss_pred ---------------------cccccCcc---------eeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 244 ---------------------DKQLKGVI---------SCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 244 ---------------------~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
...++.|. -+|++++|+|-...||||+.||.|.+||
T Consensus 195 sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 195 SSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWD 260 (323)
T ss_pred EeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEcc
Confidence 01333443 3799999999989999999999999997
No 121
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=1.2e-26 Score=176.58 Aligned_cols=214 Identities=14% Similarity=0.171 Sum_probs=180.1
Q ss_pred ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccc
Q 023643 4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPD 83 (279)
Q Consensus 4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (279)
++.|||+......+..++..-.-..++++.+| |.++.+++..||.|.|||+.. ...+
T Consensus 488 tlsiWDLAapTprikaeltssapaCyALa~sp----DakvcFsccsdGnI~vwDLhn-------------------q~~V 544 (705)
T KOG0639|consen 488 TLSIWDLAAPTPRIKAELTSSAPACYALAISP----DAKVCFSCCSDGNIAVWDLHN-------------------QTLV 544 (705)
T ss_pred eeeeeeccCCCcchhhhcCCcchhhhhhhcCC----ccceeeeeccCCcEEEEEccc-------------------ceee
Confidence 68899988766554555554456788899999 999999999999999999998 6778
Q ss_pred ccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCce
Q 023643 84 GFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENN 163 (279)
Q Consensus 84 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 163 (279)
+.|++|.+.+.||..+++|. .|.||+-|.+||.||+++..... .+... ..|.
T Consensus 545 rqfqGhtDGascIdis~dGt--klWTGGlDntvRcWDlregrqlq------qhdF~--------------------SQIf 596 (705)
T KOG0639|consen 545 RQFQGHTDGASCIDISKDGT--KLWTGGLDNTVRCWDLREGRQLQ------QHDFS--------------------SQIF 596 (705)
T ss_pred ecccCCCCCceeEEecCCCc--eeecCCCccceeehhhhhhhhhh------hhhhh--------------------hhhe
Confidence 99999999999999999998 99999999999999998642211 11110 1378
Q ss_pred eEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCc
Q 023643 164 AIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVK 243 (279)
Q Consensus 164 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 243 (279)
++..+|++.++++|-.++.+-+.... +.....+..|+.-|.++.|.+.|+++++.+.|+.+-.|...-|..+...
T Consensus 597 SLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs---- 671 (705)
T KOG0639|consen 597 SLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS---- 671 (705)
T ss_pred ecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeec----
Confidence 99999999999999999999888765 5556667779999999999999999999999999999999888877765
Q ss_pred cccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 244 DKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 244 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
.....|.++.++.|.++++||+.|....+|
T Consensus 672 -----kE~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 672 -----KESSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred -----cccCcceeeeeccCceEEEecCCCcceEEE
Confidence 344689999999999999999999776665
No 122
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1e-25 Score=176.17 Aligned_cols=228 Identities=14% Similarity=0.202 Sum_probs=175.1
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEE-CCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVW-GPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
|-+|++|+......-++.++..|.+-|.|+++ .+ +..++|+|+-|+.|.+||++++.......+.+
T Consensus 94 DtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak----~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~--------- 160 (735)
T KOG0308|consen 94 DTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAK----NNELVASGGLDRKIFLWDINTGTATLVASFNN--------- 160 (735)
T ss_pred CceEEEeecccCcchhHhhhhcccchheeeeeccc----CceeEEecCCCccEEEEEccCcchhhhhhccc---------
Confidence 67899999776544567889999999999999 55 88999999999999999999864322111111
Q ss_pred ccccccc-CCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643 81 EPDGFLH-GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV 159 (279)
Q Consensus 81 ~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (279)
.....+. ++..+|++++.++.+. .|++|+..+.+++||.++. ..+..+.+|..
T Consensus 161 ~t~~sl~sG~k~siYSLA~N~t~t--~ivsGgtek~lr~wDprt~---~kimkLrGHTd--------------------- 214 (735)
T KOG0308|consen 161 VTVNSLGSGPKDSIYSLAMNQTGT--IIVSGGTEKDLRLWDPRTC---KKIMKLRGHTD--------------------- 214 (735)
T ss_pred cccccCCCCCccceeeeecCCcce--EEEecCcccceEEeccccc---cceeeeecccc---------------------
Confidence 1222333 8999999999999997 9999999999999997654 44444554332
Q ss_pred CCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC-ceEEE
Q 023643 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG-KCIKV 238 (279)
Q Consensus 160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~ 238 (279)
-|.++..++||..+++++.||+|++||+...+++.++..|...|+++..+|+-..+.+|+.||.|..=|+++. ++...
T Consensus 215 -NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tli 293 (735)
T KOG0308|consen 215 -NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLI 293 (735)
T ss_pred -ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEe
Confidence 2789999999999999999999999999999999999999999999999999999999999999999999984 33333
Q ss_pred ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
+. ...+|..+..+.+.+-+-+++.|+.|+-|
T Consensus 294 ck---------~daPv~~l~~~~~~~~~WvtTtds~I~rW 324 (735)
T KOG0308|consen 294 CK---------EDAPVLKLHLHEHDNSVWVTTTDSSIKRW 324 (735)
T ss_pred ec---------CCCchhhhhhccccCCceeeeccccceec
Confidence 32 22344555554333323444455555555
No 123
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=6.4e-26 Score=168.32 Aligned_cols=228 Identities=16% Similarity=0.195 Sum_probs=175.5
Q ss_pred eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643 18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK 97 (279)
Q Consensus 18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 97 (279)
...+..|.++|..+.|-+ +...|++|+.|..|++|++.... .+.+.++.+..++|+++.
T Consensus 168 ~~~ld~h~gev~~v~~l~----~sdtlatgg~Dr~Ik~W~v~~~k-----------------~~~~~tLaGs~g~it~~d 226 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLR----NSDTLATGGSDRIIKLWNVLGEK-----------------SELISTLAGSLGNITSID 226 (459)
T ss_pred hhhhhccccccceeEEcc----Ccchhhhcchhhhhhhhhcccch-----------------hhhhhhhhccCCCcceee
Confidence 345667899999999999 88999999999999999998643 346678888889999999
Q ss_pred ecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEe------------ecCCCCCcccc--------CC
Q 023643 98 FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDL------------VNHQHKGPWGA--------LS 157 (279)
Q Consensus 98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~--------~~ 157 (279)
|.+++. ++++++.|+.+++|+++.. .....+.+ |...+... ........|+. ..
T Consensus 227 ~d~~~~--~~iAas~d~~~r~Wnvd~~---r~~~TLsG-HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l 300 (459)
T KOG0288|consen 227 FDSDNK--HVIAASNDKNLRLWNVDSL---RLRHTLSG-HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL 300 (459)
T ss_pred ecCCCc--eEEeecCCCceeeeeccch---hhhhhhcc-cccceeeehhhccccceeeccccchhhhhhhhhhheecccc
Confidence 999998 9999999999999998754 22233333 22222222 11111222222 11
Q ss_pred CCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEE
Q 023643 158 PVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIK 237 (279)
Q Consensus 158 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~ 237 (279)
+...+..|..+ ...+++|..|++|++||.++..+..+...+. .|+++..++++..|++++.|.++.+.|+++.+...
T Consensus 301 ~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~ 377 (459)
T KOG0288|consen 301 PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQ 377 (459)
T ss_pred ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEE
Confidence 22334555554 4578889999999999999999999988665 89999999999999999999999999999988888
Q ss_pred EecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 238 VIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+.... ..-....+.+.|||++.|+++||.||.|+||+
T Consensus 378 ~~sA~g----~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~ 415 (459)
T KOG0288|consen 378 TFSAEG----FKCASDWTRVVFSPDGSYVAAGSADGSVYIWS 415 (459)
T ss_pred Eeeccc----cccccccceeEECCCCceeeeccCCCcEEEEE
Confidence 775432 11223488999999999999999999999996
No 124
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=2.1e-25 Score=157.01 Aligned_cols=199 Identities=16% Similarity=0.126 Sum_probs=153.4
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccccccc---------CCc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGL---------SNS 72 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---------~~~ 72 (279)
|.++.+|-..++ +.+-++.+|.+.|+++...- +.+++++|+.|.++++||+.++++...+.. ...
T Consensus 31 D~~~~vw~s~nG--erlGty~GHtGavW~~Did~----~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~ 104 (327)
T KOG0643|consen 31 DSTPTVWYSLNG--ERLGTYDGHTGAVWCCDIDW----DSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFG 104 (327)
T ss_pred CCCceEEEecCC--ceeeeecCCCceEEEEEecC----CcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccC
Confidence 567788875444 45889999999999999998 899999999999999999999876652211 111
Q ss_pred cc-------------------------ceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccC
Q 023643 73 KV-------------------------QQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTES 127 (279)
Q Consensus 73 ~~-------------------------~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 127 (279)
+. .+....+|...+..+...++..-|.|.++ .|++|..||.|.+||++++...
T Consensus 105 gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~--~ii~Ghe~G~is~~da~~g~~~ 182 (327)
T KOG0643|consen 105 GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE--TIIAGHEDGSISIYDARTGKEL 182 (327)
T ss_pred CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC--EEEEecCCCcEEEEEcccCcee
Confidence 10 01111455666777888999999999998 9999999999999998764221
Q ss_pred cceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEE-----------
Q 023643 128 KVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMV----------- 196 (279)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----------- 196 (279)
. .....|.. .|+.+.++|+..++++++.|.+-++||.++-+.+.+
T Consensus 183 v---~s~~~h~~---------------------~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aa 238 (327)
T KOG0643|consen 183 V---DSDEEHSS---------------------KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAA 238 (327)
T ss_pred e---echhhhcc---------------------ccccccccCCcceEEecccCccceeeeccceeeEEEeeeccccccee
Confidence 1 11111111 378999999999999999999999999876544332
Q ss_pred --------------------------------------------eecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC
Q 023643 197 --------------------------------------------FKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS 232 (279)
Q Consensus 197 --------------------------------------------~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~ 232 (279)
.++|-++|.+++|+|+|+..++|++||.|++.-...
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 367889999999999999999999999999986554
No 125
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.8e-26 Score=189.53 Aligned_cols=226 Identities=14% Similarity=0.219 Sum_probs=178.7
Q ss_pred CCceeeecccc----ccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccccee
Q 023643 2 CGDSTNWDEDA----YRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQL 77 (279)
Q Consensus 2 dG~v~iw~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 77 (279)
||.|-+||... .....+.+...|.+.|..+.|++. .+++||+|++||.|.|||++..+....+.
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~---q~nlLASGa~~geI~iWDlnn~~tP~~~~--------- 156 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPF---QGNLLASGADDGEILIWDLNKPETPFTPG--------- 156 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeecccc---CCceeeccCCCCcEEEeccCCcCCCCCCC---------
Confidence 89999999654 345667788899999999999994 67799999999999999999742211110
Q ss_pred eeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643 78 LGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS 157 (279)
Q Consensus 78 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (279)
-..-.+.|.+++|+..-. +.|++++.+|.+.|||++.. +.+..+......
T Consensus 157 --------~~~~~~eI~~lsWNrkvq-hILAS~s~sg~~~iWDlr~~---~pii~ls~~~~~------------------ 206 (1049)
T KOG0307|consen 157 --------SQAPPSEIKCLSWNRKVS-HILASGSPSGRAVIWDLRKK---KPIIKLSDTPGR------------------ 206 (1049)
T ss_pred --------CCCCcccceEeccchhhh-HHhhccCCCCCceeccccCC---CcccccccCCCc------------------
Confidence 122456799999998766 68999999999999999753 222222221110
Q ss_pred CCCCceeEEEcCCCC-eEEEecCC---CeEEEEecCCC-cEEEEeecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCC
Q 023643 158 PVPENNAIAVDPQGG-AIFSAAGD---SCAYCWDVESS-RIKMVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCK 231 (279)
Q Consensus 158 ~~~~i~~~~~~~~~~-~l~~~~~d---~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~ 231 (279)
..+..++|+|+.. .+++++.| -.|.+||+|.. .+++++++|...|.+|.|++. ..+|++++.|+.|.+|+..
T Consensus 207 --~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~ 284 (1049)
T KOG0307|consen 207 --MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN 284 (1049)
T ss_pred --cceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence 1268999999875 56666655 36999999864 678888999999999999995 5899999999999999999
Q ss_pred CCceEEEecCCccccccCcceeeeEEEEcCCCC-EEEEEcCcceEEeCC
Q 023643 232 SGKCIKVIDPVKDKQLKGVISCVSCITLDASES-WLVRVRATNYVILFS 279 (279)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd 279 (279)
+++.+..+ .....++..+.|+|... .+++++-||.|.||+
T Consensus 285 tgEvl~~~--------p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 285 TGEVLGEL--------PAQGNWCFDVQWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred CceEeeec--------CCCCcceeeeeecCCCcchhhhheeccceeeee
Confidence 99999998 45667999999999765 788889999998874
No 126
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.3e-25 Score=173.92 Aligned_cols=181 Identities=17% Similarity=0.210 Sum_probs=152.7
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
||.|..+|+...+.. ...+.+|..+|..++|++ ++.+||+|+.|+.+.|||... .+
T Consensus 279 ~~~I~~~dvR~~~~~-~~~~~~H~qeVCgLkws~----d~~~lASGgnDN~~~Iwd~~~-------------------~~ 334 (484)
T KOG0305|consen 279 DGKILNHDVRISQHV-VSTLQGHRQEVCGLKWSP----DGNQLASGGNDNVVFIWDGLS-------------------PE 334 (484)
T ss_pred CCcEEEEEEecchhh-hhhhhcccceeeeeEECC----CCCeeccCCCccceEeccCCC-------------------cc
Confidence 788889998776532 225889999999999999 999999999999999999966 67
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEee--CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCG--DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV 159 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (279)
+...+..|.+.|.+++|+|-.. .+||+|+ .|+.|++||..++... ..... .
T Consensus 335 p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i---~~vdt-----------------------g 387 (484)
T KOG0305|consen 335 PKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARI---DSVDT-----------------------G 387 (484)
T ss_pred ccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEe---ccccc-----------------------C
Confidence 7888999999999999999766 4888875 5999999998643221 11111 1
Q ss_pred CCceeEEEcCCCCeEEE--ecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC
Q 023643 160 PENNAIAVDPQGGAIFS--AAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG 233 (279)
Q Consensus 160 ~~i~~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~ 233 (279)
.+|.+|.|++..+.|++ |..+..|.||+..+.+.+..+.+|...|..++++|+|..+++|+.|.++++|++-..
T Consensus 388 sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 388 SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 14899999998877766 455788999999999999999999999999999999999999999999999998764
No 127
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=1.9e-25 Score=170.18 Aligned_cols=211 Identities=21% Similarity=0.356 Sum_probs=166.4
Q ss_pred ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccccccc--CCccCeEEEEecC
Q 023643 23 ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLH--GHDGPAYDVKFYG 100 (279)
Q Consensus 23 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~ 100 (279)
.|.+-|.++..+. ..+.+.||+. |.|+|||+..... ..++..+. .....|.++...|
T Consensus 417 ~HGEvVcAvtIS~----~trhVyTgGk-gcVKVWdis~pg~----------------k~PvsqLdcl~rdnyiRSckL~p 475 (705)
T KOG0639|consen 417 AHGEVVCAVTISN----PTRHVYTGGK-GCVKVWDISQPGN----------------KSPVSQLDCLNRDNYIRSCKLLP 475 (705)
T ss_pred ccCcEEEEEEecC----CcceeEecCC-CeEEEeeccCCCC----------------CCccccccccCcccceeeeEecC
Confidence 4778888888888 7788888876 6799999986422 22333332 2356788999999
Q ss_pred CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCC
Q 023643 101 GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD 180 (279)
Q Consensus 101 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 180 (279)
++. .|++|+.-.++.|||+.... ......+.... ....+++.+||.+..++++.|
T Consensus 476 dgr--tLivGGeastlsiWDLAapT-prikaeltssa----------------------paCyALa~spDakvcFsccsd 530 (705)
T KOG0639|consen 476 DGR--TLIVGGEASTLSIWDLAAPT-PRIKAELTSSA----------------------PACYALAISPDAKVCFSCCSD 530 (705)
T ss_pred CCc--eEEeccccceeeeeeccCCC-cchhhhcCCcc----------------------hhhhhhhcCCccceeeeeccC
Confidence 998 99999999999999986421 11111111110 125788999999999999999
Q ss_pred CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCC------------------
Q 023643 181 SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPV------------------ 242 (279)
Q Consensus 181 ~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~------------------ 242 (279)
|.|.|||+.+...++.|++|...+.||..+++|..|-+|+.|++||.||+++++.+......
T Consensus 531 GnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavG 610 (705)
T KOG0639|consen 531 GNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVG 610 (705)
T ss_pred CcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeee
Confidence 99999999999999999999999999999999999999999999999999988665543211
Q ss_pred --------------ccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 243 --------------KDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 243 --------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
....+.-|..-|.++.|.+.|+++++.+.|+.+..|+
T Consensus 611 Mens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawr 661 (705)
T KOG0639|consen 611 MENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 661 (705)
T ss_pred cccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhcc
Confidence 1135567888899999999999999999999888884
No 128
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.2e-24 Score=156.71 Aligned_cols=220 Identities=12% Similarity=0.113 Sum_probs=158.6
Q ss_pred eEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEE
Q 023643 28 VFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALL 107 (279)
Q Consensus 28 v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 107 (279)
-.|+.|++ .|.+||+|+.||.|.|||+.+ ...-+.+.+|..+|.+++|+++|. .|
T Consensus 26 a~~~~Fs~----~G~~lAvGc~nG~vvI~D~~T-------------------~~iar~lsaH~~pi~sl~WS~dgr--~L 80 (405)
T KOG1273|consen 26 AECCQFSR----WGDYLAVGCANGRVVIYDFDT-------------------FRIARMLSAHVRPITSLCWSRDGR--KL 80 (405)
T ss_pred cceEEecc----CcceeeeeccCCcEEEEEccc-------------------cchhhhhhccccceeEEEecCCCC--Ee
Confidence 78899999 999999999999999999999 677788899999999999999998 99
Q ss_pred EEeeCCCcEEEeecCCCccCccee--------eeccC-cccceEEeecCC--------CCCccccCCCC----CCceeEE
Q 023643 108 LSCGDDGRICGWRWKEFTESKVPI--------NLQGN-HVKPVLDLVNHQ--------HKGPWGALSPV----PENNAIA 166 (279)
Q Consensus 108 ~s~~~dg~i~iw~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~--------~~~~~~~~~~~----~~i~~~~ 166 (279)
+|+|.|..|.+||+..+.....+. .+..+ ....+..+.... ........... ....+..
T Consensus 81 ltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~ 160 (405)
T KOG1273|consen 81 LTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGV 160 (405)
T ss_pred eeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccccc
Confidence 999999999999997654222111 00100 011111111000 00000000111 1122345
Q ss_pred EcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCC-cceEEEEEcCCCcEEEEecCCCeEEEEeCCCC-------ceE--
Q 023643 167 VDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHS-DYLHCIVARNSTNQIVTGSEDGTARIWDCKSG-------KCI-- 236 (279)
Q Consensus 167 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~-------~~~-- 236 (279)
|++.|+++++|...|.+.++|..+.+++..++-.. ..|..+.++..|+.|+.-+.|+.||.|+++.- +..
T Consensus 161 fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~ 240 (405)
T KOG1273|consen 161 FDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPE 240 (405)
T ss_pred ccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChh
Confidence 88899999999999999999999999999998766 78999999999999999999999999998631 111
Q ss_pred EEecCCccccccCcceeeeEEEEcCCCCEEEEEcC-cceEEeC
Q 023643 237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA-TNYVILF 278 (279)
Q Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~w 278 (279)
+.+.. .-....-.+++|+.+|.|+++|+. ...+++|
T Consensus 241 ~K~qD------vVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIW 277 (405)
T KOG1273|consen 241 HKLQD------VVNKLQWKKCCFSGDGEYVCAGSARAHALYIW 277 (405)
T ss_pred HHHHH------HHhhhhhhheeecCCccEEEeccccceeEEEE
Confidence 11100 112234567899999999988874 4567777
No 129
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=1.5e-24 Score=154.96 Aligned_cols=236 Identities=17% Similarity=0.196 Sum_probs=174.4
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.|.++++||.++.+. ...++ -.+.|++-+++|... ...++|+|..+-+|++.|+.+ +
T Consensus 122 FDhtlKVWDtnTlQ~--a~~F~-me~~VYshamSp~a~-sHcLiA~gtr~~~VrLCDi~S-------------------G 178 (397)
T KOG4283|consen 122 FDHTLKVWDTNTLQE--AVDFK-MEGKVYSHAMSPMAM-SHCLIAAGTRDVQVRLCDIAS-------------------G 178 (397)
T ss_pred ccceEEEeeccccee--eEEee-cCceeehhhcChhhh-cceEEEEecCCCcEEEEeccC-------------------C
Confidence 488999999988654 33333 347899999999532 346889999999999999999 7
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
...+++.+|.+.|.++.|+|... ..|++|+.||.|++||++... .+...+..+..+....+. .-..+.+
T Consensus 179 s~sH~LsGHr~~vlaV~Wsp~~e-~vLatgsaDg~irlWDiRras--gcf~~lD~hn~k~~p~~~--------~n~ah~g 247 (397)
T KOG4283|consen 179 SFSHTLSGHRDGVLAVEWSPSSE-WVLATGSADGAIRLWDIRRAS--GCFRVLDQHNTKRPPILK--------TNTAHYG 247 (397)
T ss_pred cceeeeccccCceEEEEeccCce-eEEEecCCCceEEEEEeeccc--ceeEEeecccCccCcccc--------ccccccc
Confidence 78899999999999999999887 578999999999999997532 233333332211100000 1233445
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEE-Eee--cCCcc---eEEEEEcCCCcEEEEecCCCeEEEEeCCCCc
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKM-VFK--GHSDY---LHCIVARNSTNQIVTGSEDGTARIWDCKSGK 234 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~--~~~~~---i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~ 234 (279)
.++.++|+.++.++++.+.|..+++|+..+|+... .+- .|... -..+. +.+...++---.++.+.++.+-++.
T Consensus 248 kvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs 326 (397)
T KOG4283|consen 248 KVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGS 326 (397)
T ss_pred eeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCce
Confidence 68999999999999999999999999998875322 110 11111 11122 2333444444556899999999999
Q ss_pred eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 235 CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+..+ ..|-..|.+.++.|+-+...+|..|+.+..|.
T Consensus 327 ~ir~l--------~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 327 FVRRL--------STHLKRINCAAYRPDFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred EEEee--------ecccceeeEEeecCchhhhhccccCCcccccc
Confidence 99998 67888899999999999999999999999883
No 130
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.8e-24 Score=174.11 Aligned_cols=220 Identities=15% Similarity=0.218 Sum_probs=173.4
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.||+|+..... ........+...|.+++-.. .+|++|+.+++|.+|.+..+
T Consensus 33 sdg~ir~~~~~sd~-e~P~ti~~~g~~v~~ia~~s------~~f~~~s~~~tv~~y~fps~------------------- 86 (933)
T KOG1274|consen 33 SDGDIRKWKTNSDE-EEPETIDISGELVSSIACYS------NHFLTGSEQNTVLRYKFPSG------------------- 86 (933)
T ss_pred CCCceEEeecCCcc-cCCchhhccCceeEEEeecc------cceEEeeccceEEEeeCCCC-------------------
Confidence 48999999855432 11222333667788777654 69999999999999999983
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
+.-..+..-+-++.+++|+.+|+ +++.||.|-.|++-++.+.... ..+.++ ..
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~---~~lrgh----------------------~a 139 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQE---KVLRGH----------------------DA 139 (933)
T ss_pred CccceeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchh---eeeccc----------------------CC
Confidence 44444445667899999999998 9999999999999997654222 222221 12
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec-------C-CcceEEEEEcCCCcEEEEecCCCeEEEEeCCC
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG-------H-SDYLHCIVARNSTNQIVTGSEDGTARIWDCKS 232 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------~-~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~ 232 (279)
+|.++.|+|.+++||+.+.||.|++||+.++.+...+.+ - ...+..++|+|++..++..+.|+.|++|+...
T Consensus 140 pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 140 PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG 219 (933)
T ss_pred ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC
Confidence 479999999999999999999999999999887766543 1 34566789999988888899999999999999
Q ss_pred CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 233 GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
......+.. ..+...+..+.|+|+|.|||+++.||.|.|||
T Consensus 220 we~~f~Lr~------~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 220 WELQFKLRD------KLSSSKFSDLQWSPNGKYIAASTLDGQILVWN 260 (933)
T ss_pred ceeheeecc------cccccceEEEEEcCCCcEEeeeccCCcEEEEe
Confidence 988888865 34445599999999999999999999999997
No 131
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.93 E-value=2.1e-25 Score=161.18 Aligned_cols=240 Identities=18% Similarity=0.193 Sum_probs=169.4
Q ss_pred CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccc
Q 023643 3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEP 82 (279)
Q Consensus 3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (279)
|.|||.|+... ++.+.+.+|...|..+.++|. +.+++++++.|..||+|++++..+...+
T Consensus 115 GvIrVid~~~~--~~~~~~~ghG~sINeik~~p~---~~qlvls~SkD~svRlwnI~~~~Cv~Vf--------------- 174 (385)
T KOG1034|consen 115 GVIRVIDVVSG--QCSKNYRGHGGSINEIKFHPD---RPQLVLSASKDHSVRLWNIQTDVCVAVF--------------- 174 (385)
T ss_pred eEEEEEecchh--hhccceeccCccchhhhcCCC---CCcEEEEecCCceEEEEeccCCeEEEEe---------------
Confidence 78899998776 557789999999999999995 7889999999999999999994332221
Q ss_pred cccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcccc-------
Q 023643 83 DGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGA------- 155 (279)
Q Consensus 83 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 155 (279)
.-+.+|.+.|.++.|++++. +|++++.|.+|++|+++..+-.. +......+..+...+++..
T Consensus 175 -GG~egHrdeVLSvD~~~~gd--~i~ScGmDhslk~W~l~~~~f~~--------~lE~s~~~~~~~t~~pfpt~~~~fp~ 243 (385)
T KOG1034|consen 175 -GGVEGHRDEVLSVDFSLDGD--RIASCGMDHSLKLWRLNVKEFKN--------KLELSITYSPNKTTRPFPTPKTHFPD 243 (385)
T ss_pred -cccccccCcEEEEEEcCCCC--eeeccCCcceEEEEecChhHHhh--------hhhhhcccCCCCccCcCCcccccccc
Confidence 22356999999999999998 99999999999999997321100 0000011111111111111
Q ss_pred ----CCCCCCceeEEEcCCCCeEEEecCCCeEEEEec-CCC-------------cEEEEeecCCcceEEEEE--cCCCcE
Q 023643 156 ----LSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDV-ESS-------------RIKMVFKGHSDYLHCIVA--RNSTNQ 215 (279)
Q Consensus 156 ----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~-------------~~~~~~~~~~~~i~~i~~--~~~~~~ 215 (279)
.-|...|-|+.|- |+++++-+.++.|..|.. +-. ..+.++.-....|+-|.| .|-++.
T Consensus 244 fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~ 321 (385)
T KOG1034|consen 244 FSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKM 321 (385)
T ss_pred ccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHH
Confidence 1122345666664 568888888999999987 211 123344444555666654 556899
Q ss_pred EEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 216 IVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 216 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
||.|...|.|.+||++...+...-.... ......|...+|+.|+..|+....|++|.-||
T Consensus 322 la~gnq~g~v~vwdL~~~ep~~~ttl~~----s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPPKCTTLTH----SKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred HhhccCCCcEEEEECCCCCCccCceEEe----ccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 9999999999999999876531111000 23346799999999999999999999999886
No 132
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.6e-24 Score=149.71 Aligned_cols=220 Identities=34% Similarity=0.536 Sum_probs=162.4
Q ss_pred cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643 26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA 105 (279)
Q Consensus 26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 105 (279)
..|.+-+++| .+++|++|+.+|+|.+..+++....... +.+ ..++-..++|.++++.++|..+
T Consensus 11 ~tvf~qa~sp----~~~~l~agn~~G~iav~sl~sl~s~sa~---~~g------k~~iv~eqahdgpiy~~~f~d~---- 73 (325)
T KOG0649|consen 11 NTVFAQAISP----SKQYLFAGNLFGDIAVLSLKSLDSGSAE---PPG------KLKIVPEQAHDGPIYYLAFHDD---- 73 (325)
T ss_pred HHHHHHhhCC----cceEEEEecCCCeEEEEEehhhhccccC---CCC------CcceeeccccCCCeeeeeeehh----
Confidence 4577778999 8999999999999999999864322210 000 3344556899999999999833
Q ss_pred EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEE
Q 023643 106 LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYC 185 (279)
Q Consensus 106 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 185 (279)
+|++|+ ||.|+=|..++..+. .+.++++.+..+.+.. ....+.|+++...|..+-++.++.|+.++-
T Consensus 74 ~Lls~g-dG~V~gw~W~E~~es--------~~~K~lwe~~~P~~~~----~~evPeINam~ldP~enSi~~AgGD~~~y~ 140 (325)
T KOG0649|consen 74 FLLSGG-DGLVYGWEWNEEEES--------LATKRLWEVKIPMQVD----AVEVPEINAMWLDPSENSILFAGGDGVIYQ 140 (325)
T ss_pred heeecc-CceEEEeeehhhhhh--------ccchhhhhhcCccccC----cccCCccceeEeccCCCcEEEecCCeEEEE
Confidence 677777 599999998754221 3444444444443332 222346899999998888888889999999
Q ss_pred EecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccC-c-ceeeeEEEEcCCC
Q 023643 186 WDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKG-V-ISCVSCITLDASE 263 (279)
Q Consensus 186 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~-~~~v~~~~~~~~~ 263 (279)
||+++|+..+++++|+..|.++.-......+++|++||++|+||+++++++..+.+.....+.. | ..+|-+++- +.
T Consensus 141 ~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~e 218 (325)
T KOG0649|consen 141 VDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NE 218 (325)
T ss_pred EEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cC
Confidence 9999999999999999999999886667789999999999999999999999998765433222 2 234555554 56
Q ss_pred CEEEEEcCcceEEeC
Q 023643 264 SWLVRVRATNYVILF 278 (279)
Q Consensus 264 ~~l~~~~~d~~i~~w 278 (279)
.+|++|+.- .+.+|
T Consensus 219 dWlvCGgGp-~lslw 232 (325)
T KOG0649|consen 219 DWLVCGGGP-KLSLW 232 (325)
T ss_pred ceEEecCCC-ceeEE
Confidence 778887653 34555
No 133
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=1.2e-24 Score=169.84 Aligned_cols=251 Identities=16% Similarity=0.149 Sum_probs=172.7
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccc-------cCCc--
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLG-------LSNS-- 72 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------~~~~-- 72 (279)
|.++|+||++.....-...+.+|...|.+++|.|. +...|++|+.||.|.|||++......... ..+.
T Consensus 121 DsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~---n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p 197 (720)
T KOG0321|consen 121 DSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPT---NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP 197 (720)
T ss_pred CceeeeeeeccceeecceeecccccccchhhhccC---CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC
Confidence 67899999998865445568899999999999995 88999999999999999997644222111 1111
Q ss_pred ccceeeeccccccccCCccCeEE---EEecCCCCceEEEEeeC-CCcEEEeecCCCccCcceeeeccCcccceEEeecCC
Q 023643 73 KVQQLLGIEPDGFLHGHDGPAYD---VKFYGGNEDALLLSCGD-DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQ 148 (279)
Q Consensus 73 ~~~~~~~~~~~~~~~~h~~~v~~---~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (279)
...+.. .+.+...+.|...|.+ +.+..|.. .|+++|. |+.|++||++.............+ . +...
T Consensus 198 tpskp~-~kr~~k~kA~s~ti~ssvTvv~fkDe~--tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~-~-----~~t~- 267 (720)
T KOG0321|consen 198 TPSKPL-KKRIRKWKAASNTIFSSVTVVLFKDES--TLASAGAADSTIKVWDLRKNYTAYRQEPRGSD-K-----YPTH- 267 (720)
T ss_pred CCCchh-hccccccccccCceeeeeEEEEEeccc--eeeeccCCCcceEEEeecccccccccCCCccc-C-----ccCc-
Confidence 111111 3334444556655655 55566665 8999888 999999999864322111111000 0 0000
Q ss_pred CCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCC--cEEEEeecCCcce--EEEEEcCCCcEEEEecCCCe
Q 023643 149 HKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS--RIKMVFKGHSDYL--HCIVARNSTNQIVTGSEDGT 224 (279)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~i--~~i~~~~~~~~l~~~~~d~~ 224 (279)
......+.++..+..|.+|++.+.|+.|++||+.+- .++..+.++...- ..-..+|++.++++|+.|..
T Consensus 268 -------skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ 340 (720)
T KOG0321|consen 268 -------SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQ 340 (720)
T ss_pred -------ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcc
Confidence 000113678888888999998888999999999863 4555555543321 12246799999999999999
Q ss_pred EEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCC-CCEEEEEcCcceEEeCC
Q 023643 225 ARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS-ESWLVRVRATNYVILFS 279 (279)
Q Consensus 225 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd 279 (279)
.++|.+.+.+.-..+. .+|...|++++|.|. -.-++|++.|..+++|+
T Consensus 341 ayiw~vs~~e~~~~~l-------~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 341 AYIWVVSSPEAPPALL-------LGHTREVTTVRWLPSATTPVATCSDDFRVKIWR 389 (720)
T ss_pred eeeeeecCccCChhhh-------hCcceEEEEEeeccccCCCceeeccCcceEEEe
Confidence 9999998866544442 799999999999884 23467779999999996
No 134
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.9e-24 Score=161.77 Aligned_cols=242 Identities=12% Similarity=0.193 Sum_probs=182.7
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCC-EEEEecCCCcEEEEeCCCCCccc-------------c
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPD-TIVIASSDGSITSYSIPSCISKL-------------P 66 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~-------------~ 66 (279)
+||.++||.+++.....++.+.....+|.+.+|.| +|. .+++++.-..+..||+.+.+... .
T Consensus 233 ~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p----~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~ 308 (514)
T KOG2055|consen 233 LDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAP----NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMER 308 (514)
T ss_pred CCCcEEEEEecCccChhheeeeeccCccceeeecC----CCceEEEecccceEEEEeeccccccccccCCCCcccchhhe
Confidence 58999999999988778888888889999999999 787 89999999999999998764332 1
Q ss_pred cccCCcccceeee-------------ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeee
Q 023643 67 LGLSNSKVQQLLG-------------IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINL 133 (279)
Q Consensus 67 ~~~~~~~~~~~~~-------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 133 (279)
++.++...--.+. .+.+..++ -.+.|..++|+.+++ .|++++.+|.|.+||++.. .+...+
T Consensus 309 FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk--~l~~~~~~GeV~v~nl~~~---~~~~rf 382 (514)
T KOG2055|consen 309 FEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSK--ELLASGGTGEVYVWNLRQN---SCLHRF 382 (514)
T ss_pred eEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCc--EEEEEcCCceEEEEecCCc---ceEEEE
Confidence 1111211100000 22222332 356789999999997 8888888999999999753 222222
Q ss_pred ccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCC------CcEEEEeecCCcceEEE
Q 023643 134 QGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVES------SRIKMVFKGHSDYLHCI 207 (279)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~------~~~~~~~~~~~~~i~~i 207 (279)
...... .-++++.++++.+||+|+..|.|.|||..+ .+++..+..-...|+.|
T Consensus 383 ~D~G~v---------------------~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl 441 (514)
T KOG2055|consen 383 VDDGSV---------------------HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSL 441 (514)
T ss_pred eecCcc---------------------ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeee
Confidence 211100 126788889999999999999999999653 46777777677889999
Q ss_pred EEcCCCcEEEEecC--CCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 208 VARNSTNQIVTGSE--DGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 208 ~~~~~~~~l~~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
.|+++.+.|+.+|. +..+++-.+.+......++.. ...-..|+|++|+|.+-+||.|..+|.+.+|
T Consensus 442 ~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~-----n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~ 509 (514)
T KOG2055|consen 442 QFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTS-----NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLF 509 (514)
T ss_pred eeCcchhhhhhhhhccccceEEEeccceeeeccCCCC-----CCcccceEEEEecCCCceEEeecCCCceeeE
Confidence 99999999888774 677999888887766666543 3444679999999999999999999999998
No 135
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=9.3e-24 Score=171.13 Aligned_cols=217 Identities=14% Similarity=0.215 Sum_probs=166.7
Q ss_pred CCCceeeecccccccc-ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643 1 MCGDSTNWDEDAYRKS-ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG 79 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 79 (279)
++++|.+|........ ++..+ .-++..++|+- +|+++|.|+.|-.|++-+..+
T Consensus 74 ~~~tv~~y~fps~~~~~iL~Rf---tlp~r~~~v~g----~g~~iaagsdD~~vK~~~~~D------------------- 127 (933)
T KOG1274|consen 74 EQNTVLRYKFPSGEEDTILARF---TLPIRDLAVSG----SGKMIAAGSDDTAVKLLNLDD------------------- 127 (933)
T ss_pred ccceEEEeeCCCCCccceeeee---eccceEEEEec----CCcEEEeecCceeEEEEeccc-------------------
Confidence 4678888886665433 33333 47899999999 999999999999999999998
Q ss_pred ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643 80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV 159 (279)
Q Consensus 80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (279)
......+++|.++|.++.|+|++. +||+.+-||.|++|++.+.........+..... +.. .
T Consensus 128 ~s~~~~lrgh~apVl~l~~~p~~~--fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~-----~~~------------s 188 (933)
T KOG1274|consen 128 SSQEKVLRGHDAPVLQLSYDPKGN--FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE-----FIL------------S 188 (933)
T ss_pred cchheeecccCCceeeeeEcCCCC--EEEEEecCceEEEEEcccchhhhhcccCCcccc-----ccc------------c
Confidence 566788999999999999999998 999999999999999876433222221111100 000 0
Q ss_pred CCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec--CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEE
Q 023643 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG--HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIK 237 (279)
Q Consensus 160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~ 237 (279)
.-+..++|+|++..+++.+.|+.|++|+...++....+.. +...+.++.|+|.|+|||+++.||.|.|||.++...
T Consensus 189 ~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-- 266 (933)
T KOG1274|consen 189 RICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-- 266 (933)
T ss_pred ceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh--
Confidence 1257889999999999999999999999999988887754 445589999999999999999999999999987221
Q ss_pred EecCCccccccCcceeeeEEEEcCCCCEEEEEcCcce
Q 023643 238 VIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNY 274 (279)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 274 (279)
......|.+++|.|+.+.+-.-...|.
T Consensus 267 ----------~~~~~~Vc~~aw~p~~n~it~~~~~g~ 293 (933)
T KOG1274|consen 267 ----------HEFKRAVCCEAWKPNANAITLITALGT 293 (933)
T ss_pred ----------ccccceeEEEecCCCCCeeEEEeeccc
Confidence 123357899999998776544433333
No 136
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=2.3e-23 Score=158.76 Aligned_cols=232 Identities=14% Similarity=0.165 Sum_probs=172.9
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCc---------
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNS--------- 72 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--------- 72 (279)
+|.|.||+..+.+. .+....|.+.|.+++.-. +|.+|- |+.|..|..||-+ -......+....
T Consensus 266 ~G~i~Iw~~~~~~~--~k~~~aH~ggv~~L~~lr----~GtllS-GgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e 337 (626)
T KOG2106|consen 266 GGNILIWSKGTNRI--SKQVHAHDGGVFSLCMLR----DGTLLS-GGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAE 337 (626)
T ss_pred CceEEEEeCCCceE--EeEeeecCCceEEEEEec----CccEee-cCccceEEecccc-ccccccccCchhcCCeeEEec
Confidence 68999999877643 444558999999999998 787655 9999999999932 222211111110
Q ss_pred -ccc--------eeee----ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCccc
Q 023643 73 -KVQ--------QLLG----IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVK 139 (279)
Q Consensus 73 -~~~--------~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 139 (279)
..+ .++. ........+|......++.+|+.+ +++|++.|+.+++|+ ............
T Consensus 338 ~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~--q~~T~gqdk~v~lW~---~~k~~wt~~~~d---- 408 (626)
T KOG2106|consen 338 GKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN--QLLTCGQDKHVRLWN---DHKLEWTKIIED---- 408 (626)
T ss_pred CCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh--heeeccCcceEEEcc---CCceeEEEEecC----
Confidence 000 1111 222234567889999999999998 999999999999999 211111111111
Q ss_pred ceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEe
Q 023643 140 PVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTG 219 (279)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 219 (279)
++.|+.|+|.| .++.|+..|...+.|.++...+..-.. ..++.+|+|+|+|.+||.|
T Consensus 409 ---------------------~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvg 465 (626)
T KOG2106|consen 409 ---------------------PAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVG 465 (626)
T ss_pred ---------------------ceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEe
Confidence 25799999999 999999999999999998766665554 8899999999999999999
Q ss_pred cCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 220 SEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 220 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+.|+.|+||.+..+........ ..+..+|+.+.|++|+++|.+-+.|-.|..|.
T Consensus 466 s~d~~iyiy~Vs~~g~~y~r~~------k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 466 SHDNHIYIYRVSANGRKYSRVG------KCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred cCCCeEEEEEECCCCcEEEEee------eecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 9999999999876544333322 23338999999999999999999999998883
No 137
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.8e-24 Score=162.68 Aligned_cols=218 Identities=17% Similarity=0.264 Sum_probs=171.5
Q ss_pred eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCc-ccceeeeccccccc-cCCccCeEE
Q 023643 18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNS-KVQQLLGIEPDGFL-HGHDGPAYD 95 (279)
Q Consensus 18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~h~~~v~~ 95 (279)
+.....|.-++.+++++| +..+.++++.+|+|.-|++.++.....+--.+. .... +.+...- +.|...+.+
T Consensus 135 ~~~~~~H~~s~~~vals~----d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~---~~~~k~~r~~h~keil~ 207 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSP----DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSH---GNPLKESRKGHVKEILT 207 (479)
T ss_pred ceeeccccCcceEEEeec----cccceeecCCCcceeeeehhcCcccccccccchhhhhc---cCCCCcccccccceeEE
Confidence 455677999999999999 899999999999999999998754421111100 0000 2222222 489999999
Q ss_pred EEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEE
Q 023643 96 VKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF 175 (279)
Q Consensus 96 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 175 (279)
++.+++++ +|++|+.|..|.||+.++....+ .+.++. +.|.+++|-.....++
T Consensus 208 ~avS~Dgk--ylatgg~d~~v~Iw~~~t~ehv~---~~~ghr----------------------~~V~~L~fr~gt~~ly 260 (479)
T KOG0299|consen 208 LAVSSDGK--YLATGGRDRHVQIWDCDTLEHVK---VFKGHR----------------------GAVSSLAFRKGTSELY 260 (479)
T ss_pred EEEcCCCc--EEEecCCCceEEEecCcccchhh---cccccc----------------------cceeeeeeecCcccee
Confidence 99999998 99999999999999987642222 222221 2478999988778999
Q ss_pred EecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeee
Q 023643 176 SAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVS 255 (279)
Q Consensus 176 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 255 (279)
+++.|..|++|+++....+.++-+|++.|..|....-++.+-+|+.|+++++|++..... ..+ .++...+-
T Consensus 261 s~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lif--------rg~~~sid 331 (479)
T KOG0299|consen 261 SASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIF--------RGGEGSID 331 (479)
T ss_pred eeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccce-eee--------eCCCCCee
Confidence 999999999999999999999999999999998887788888888999999999954332 233 57788899
Q ss_pred EEEEcCCCCEEEEEcCcceEEeCC
Q 023643 256 CITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 256 ~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
|++|-. ...+++||.+|.|.+|+
T Consensus 332 cv~~In-~~HfvsGSdnG~IaLWs 354 (479)
T KOG0299|consen 332 CVAFIN-DEHFVSGSDNGSIALWS 354 (479)
T ss_pred eEEEec-ccceeeccCCceEEEee
Confidence 999974 56799999999999996
No 138
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=1.7e-24 Score=169.09 Aligned_cols=243 Identities=17% Similarity=0.185 Sum_probs=164.5
Q ss_pred CCceeeeccccccc----cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccccee
Q 023643 2 CGDSTNWDEDAYRK----SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQL 77 (279)
Q Consensus 2 dG~v~iw~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 77 (279)
||.|.++|.+.... ..++....|...|..+.|.| ...+|++++.|.++++||+.+.
T Consensus 73 ~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap----ge~~lVsasGDsT~r~Wdvk~s---------------- 132 (720)
T KOG0321|consen 73 DGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP----GESLLVSASGDSTIRPWDVKTS---------------- 132 (720)
T ss_pred CCceeeecchhhhcchhhhhhcccccccceeEeeccCC----CceeEEEccCCceeeeeeeccc----------------
Confidence 78999999665432 22556778999999999999 7889999999999999999983
Q ss_pred eeccccc--cccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccC----cceeeeccCcc--cceEEeecCCC
Q 023643 78 LGIEPDG--FLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTES----KVPINLQGNHV--KPVLDLVNHQH 149 (279)
Q Consensus 78 ~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~ 149 (279)
+... .+.+|.+.|.+++|.|..+ ..|++|+.||.|.|||++..... ........+.. .+..-+....+
T Consensus 133 ---~l~G~~~~~GH~~SvkS~cf~~~n~-~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~ 208 (720)
T KOG0321|consen 133 ---RLVGGRLNLGHTGSVKSECFMPTNP-AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR 208 (720)
T ss_pred ---eeecceeecccccccchhhhccCCC-cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence 3333 3789999999999999887 68999999999999999754311 01111111111 11111111111
Q ss_pred CCccccCCCCCCcee---EEEcCCCCeEEEecC-CCeEEEEecCCCcEEEE------e--ecC---CcceEEEEEcCCCc
Q 023643 150 KGPWGALSPVPENNA---IAVDPQGGAIFSAAG-DSCAYCWDVESSRIKMV------F--KGH---SDYLHCIVARNSTN 214 (279)
Q Consensus 150 ~~~~~~~~~~~~i~~---~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~------~--~~~---~~~i~~i~~~~~~~ 214 (279)
. -..+...|.+ +.+..|+..|++++. |+.|++||++....... . ..| .-.+.++.....|.
T Consensus 209 k----~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt 284 (720)
T KOG0321|consen 209 K----WKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT 284 (720)
T ss_pred c----cccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence 1 1122223333 445567888998887 99999999987543222 2 223 23567788888889
Q ss_pred EEEEecCCCeEEEEeCCCCc--eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 215 QIVTGSEDGTARIWDCKSGK--CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 215 ~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
+|++.+.|+.|++|++++.. ++..+..+ ......|. -..+|++.+|++|+.|...++|
T Consensus 285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~-----~~~sf~vk-s~lSpd~~~l~SgSsd~~ayiw 344 (720)
T KOG0321|consen 285 YLFASCTDNSIYFYNMRSLSISPVAEFSGK-----LNSSFYVK-SELSPDDCSLLSGSSDEQAYIW 344 (720)
T ss_pred eEEEEecCCcEEEEeccccCcCchhhccCc-----ccceeeee-eecCCCCceEeccCCCcceeee
Confidence 98888889999999998643 22333111 01111222 2468999999999999999998
No 139
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.4e-24 Score=152.47 Aligned_cols=200 Identities=20% Similarity=0.298 Sum_probs=158.8
Q ss_pred eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643 18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK 97 (279)
Q Consensus 18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 97 (279)
+..+..|.+.|++++.+- .++|+|+.|-+|+|||+.+ ...+..+..|.+.|+++.
T Consensus 36 lF~~~aH~~sitavAVs~------~~~aSGssDetI~IYDm~k-------------------~~qlg~ll~HagsitaL~ 90 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVSG------PYVASGSSDETIHIYDMRK-------------------RKQLGILLSHAGSITALK 90 (362)
T ss_pred cccccccccceeEEEecc------eeEeccCCCCcEEEEeccc-------------------hhhhcceeccccceEEEE
Confidence 446678999999999864 8999999999999999998 566777888999999999
Q ss_pred ecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe
Q 023643 98 FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA 177 (279)
Q Consensus 98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 177 (279)
|.+.-....|++|+.||.|.+|+.... .....++.+.. +|+.++++|.+++-++.
T Consensus 91 F~~~~S~shLlS~sdDG~i~iw~~~~W---~~~~slK~H~~----------------------~Vt~lsiHPS~KLALsV 145 (362)
T KOG0294|consen 91 FYPPLSKSHLLSGSDDGHIIIWRVGSW---ELLKSLKAHKG----------------------QVTDLSIHPSGKLALSV 145 (362)
T ss_pred ecCCcchhheeeecCCCcEEEEEcCCe---EEeeeeccccc----------------------ccceeEecCCCceEEEE
Confidence 998764447999999999999997543 33333333222 37999999999999999
Q ss_pred cCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEE
Q 023643 178 AGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCI 257 (279)
Q Consensus 178 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 257 (279)
+.|+.++.||+-.|+.-..+.-. ...+-+.|+|.|.+++.++.++ |-+|.+.+.+....+.. ...+.++
T Consensus 146 g~D~~lr~WNLV~Gr~a~v~~L~-~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~---------~~r~l~~ 214 (362)
T KOG0294|consen 146 GGDQVLRTWNLVRGRVAFVLNLK-NKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIEN---------PKRILCA 214 (362)
T ss_pred cCCceeeeehhhcCccceeeccC-CcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhc---------cccceee
Confidence 99999999999988776655422 2234499999999988887665 89999988777666532 1345666
Q ss_pred EEcCCCCEEEEEcCcceEEeCC
Q 023643 258 TLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 258 ~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.|. ++..|++|+.|+.|.+||
T Consensus 215 ~~l-~~~~L~vG~d~~~i~~~D 235 (362)
T KOG0294|consen 215 TFL-DGSELLVGGDNEWISLKD 235 (362)
T ss_pred eec-CCceEEEecCCceEEEec
Confidence 665 577899999999999997
No 140
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=1.6e-22 Score=156.29 Aligned_cols=238 Identities=10% Similarity=0.023 Sum_probs=156.9
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEE-EEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTI-VIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG 79 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 79 (279)
.||.|++||+++.+ .+..+..+ ..+..++|+| ++..+ ++++.++.|++||..+
T Consensus 9 ~d~~v~~~d~~t~~--~~~~~~~~-~~~~~l~~~~----dg~~l~~~~~~~~~v~~~d~~~------------------- 62 (300)
T TIGR03866 9 KDNTISVIDTATLE--VTRTFPVG-QRPRGITLSK----DGKLLYVCASDSDTIQVIDLAT------------------- 62 (300)
T ss_pred CCCEEEEEECCCCc--eEEEEECC-CCCCceEECC----CCCEEEEEECCCCeEEEEECCC-------------------
Confidence 37999999987764 35555544 3467899999 78766 6678899999999987
Q ss_pred ccccccccCCccCeEEEEecCCCCceEE-EEeeCCCcEEEeecCCCccCcceeeeccC---------cccceEEee----
Q 023643 80 IEPDGFLHGHDGPAYDVKFYGGNEDALL-LSCGDDGRICGWRWKEFTESKVPINLQGN---------HVKPVLDLV---- 145 (279)
Q Consensus 80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---------~~~~~~~~~---- 145 (279)
++....+..+.. +..+.|+|+++ .+ ++++.|+.+++||+++... ...+... .........
T Consensus 63 ~~~~~~~~~~~~-~~~~~~~~~g~--~l~~~~~~~~~l~~~d~~~~~~---~~~~~~~~~~~~~~~~~dg~~l~~~~~~~ 136 (300)
T TIGR03866 63 GEVIGTLPSGPD-PELFALHPNGK--ILYIANEDDNLVTVIDIETRKV---LAEIPVGVEPEGMAVSPDGKIVVNTSETT 136 (300)
T ss_pred CcEEEeccCCCC-ccEEEECCCCC--EEEEEcCCCCeEEEEECCCCeE---EeEeeCCCCcceEEECCCCCEEEEEecCC
Confidence 333334443333 46788999987 55 4556789999999875321 1111100 000000000
Q ss_pred ------cCCCCCccccCCCCCCceeEEEcCCCCeEEEe-cCCCeEEEEecCCCcEEEEeecCC-----c--ceEEEEEcC
Q 023643 146 ------NHQHKGPWGALSPVPENNAIAVDPQGGAIFSA-AGDSCAYCWDVESSRIKMVFKGHS-----D--YLHCIVARN 211 (279)
Q Consensus 146 ------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~-----~--~i~~i~~~~ 211 (279)
..................+++|+|++++++++ ..++.|++||+.+++.+..+..+. . ....++|+|
T Consensus 137 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~ 216 (300)
T TIGR03866 137 NMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK 216 (300)
T ss_pred CeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC
Confidence 00000000001112245678999999988654 468999999999988777664321 1 234688999
Q ss_pred CCcEEEE-ecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEE-cCcceEEeCC
Q 023643 212 STNQIVT-GSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV-RATNYVILFS 279 (279)
Q Consensus 212 ~~~~l~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~wd 279 (279)
++++++. .+.++.+.+||+++++.+..+. +...+.+++|+|++++|+++ +.++.|.+||
T Consensus 217 dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~---------~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 217 DGKTAFVALGPANRVAVVDAKTYEVLDYLL---------VGQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCCCcEEEEEE---------eCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 9988544 4567789999999888776552 22368899999999999886 4689999997
No 141
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.1e-23 Score=162.97 Aligned_cols=219 Identities=16% Similarity=0.235 Sum_probs=173.0
Q ss_pred CCCceeeeccccccccceeeeeec-ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643 1 MCGDSTNWDEDAYRKSILKEREIL-TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG 79 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 79 (279)
.||.|.||++...-.. ...+.++ ...|.+++|++ +.+|++.+.+|.|.-||+.+
T Consensus 45 t~g~IEiwN~~~~w~~-~~vi~g~~drsIE~L~W~e-----~~RLFS~g~sg~i~EwDl~~------------------- 99 (691)
T KOG2048|consen 45 TDGNIEIWNLSNNWFL-EPVIHGPEDRSIESLAWAE-----GGRLFSSGLSGSITEWDLHT------------------- 99 (691)
T ss_pred cCCcEEEEccCCCcee-eEEEecCCCCceeeEEEcc-----CCeEEeecCCceEEEEeccc-------------------
Confidence 4899999998874322 2233333 56799999997 56788889999999999998
Q ss_pred ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643 80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV 159 (279)
Q Consensus 80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (279)
.++...+....+.|++++.+|.+. .++.|+.||.+..++..... ......+.. . .
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~-I~~~r~l~r-q---------------------~ 154 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDK-ITYKRSLMR-Q---------------------K 154 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCce-EEEEeeccc-c---------------------c
Confidence 677778888889999999999998 99999999977777754321 111111111 1 1
Q ss_pred CCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee--------cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC
Q 023643 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK--------GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK 231 (279)
Q Consensus 160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--------~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~ 231 (279)
.++.+++|+|++..+++|+.||.|++||..++..+.... +...-|+++.|-. ...|++|...|+|++||..
T Consensus 155 sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd~~ 233 (691)
T KOG2048|consen 155 SRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWDSI 233 (691)
T ss_pred ceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEEEccc
Confidence 147899999999999999999999999999987776221 1234567777764 5689999999999999999
Q ss_pred CCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 232 SGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
.+.+++.+ ..|.+.|.+++..+++.++++++.|+.|..|
T Consensus 234 ~gTLiqS~--------~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~ 272 (691)
T KOG2048|consen 234 FGTLIQSH--------SCHDADVLALAVADNEDRVFSAGVDPKIIQY 272 (691)
T ss_pred Ccchhhhh--------hhhhcceeEEEEcCCCCeEEEccCCCceEEE
Confidence 99999888 7888999999999999999999999988654
No 142
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=4.3e-24 Score=169.28 Aligned_cols=203 Identities=17% Similarity=0.216 Sum_probs=163.5
Q ss_pred ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCC-CC
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGG-NE 103 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~ 103 (279)
...+.+++.+| ++++||+|..-|+|+||++.. .+.+..+..|+..|.|+.|+.. -.
T Consensus 459 r~G~R~~~vSp----~gqhLAsGDr~GnlrVy~Lq~-------------------l~~~~~~eAHesEilcLeyS~p~~~ 515 (1080)
T KOG1408|consen 459 RFGFRALAVSP----DGQHLASGDRGGNLRVYDLQE-------------------LEYTCFMEAHESEILCLEYSFPVLT 515 (1080)
T ss_pred ccceEEEEECC----CcceecccCccCceEEEEehh-------------------hhhhhheecccceeEEEeecCchhh
Confidence 45689999999 999999999999999999998 6777888999999999999853 22
Q ss_pred ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC--CeEEEecCCC
Q 023643 104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG--GAIFSAAGDS 181 (279)
Q Consensus 104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~ 181 (279)
..+|++++.|.-|.++|+.. +......+.++.. .|+++.|...| ..+++++.|.
T Consensus 516 ~kLLASasrdRlIHV~Dv~r--ny~l~qtld~HSs----------------------sITsvKFa~~gln~~MiscGADk 571 (1080)
T KOG1408|consen 516 NKLLASASRDRLIHVYDVKR--NYDLVQTLDGHSS----------------------SITSVKFACNGLNRKMISCGADK 571 (1080)
T ss_pred hHhhhhccCCceEEEEeccc--ccchhhhhccccc----------------------ceeEEEEeecCCceEEEeccCch
Confidence 24899999999999999742 2233333333222 37999998877 5788999998
Q ss_pred eEEEEecCCCcEEEEeecC-----CcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeE
Q 023643 182 CAYCWDVESSRIKMVFKGH-----SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSC 256 (279)
Q Consensus 182 ~i~i~d~~~~~~~~~~~~~-----~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 256 (279)
.|.+--.+.....+.|..| ...++.|+..|..+++++++.|+.|+|||+.+++..+.++.. .+|.+..-.
T Consensus 572 simFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs-----~~~eG~lIK 646 (1080)
T KOG1408|consen 572 SIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGS-----RDHEGDLIK 646 (1080)
T ss_pred hhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccc-----ccCCCceEE
Confidence 8776444332223333322 356899999999999999999999999999999999999765 578788888
Q ss_pred EEEcCCCCEEEEEcCcceEEeCC
Q 023643 257 ITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 257 ~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+..+|.|.|||+...|.++.++|
T Consensus 647 v~lDPSgiY~atScsdktl~~~D 669 (1080)
T KOG1408|consen 647 VILDPSGIYLATSCSDKTLCFVD 669 (1080)
T ss_pred EEECCCccEEEEeecCCceEEEE
Confidence 99999999999999999999886
No 143
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4e-23 Score=155.70 Aligned_cols=203 Identities=11% Similarity=0.204 Sum_probs=165.4
Q ss_pred ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED 104 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 104 (279)
.+.|+++.|+| ...+|++++.||+++||.+.... ...+..+.--..||.+.+|.|+|.
T Consensus 213 ~~~I~sv~FHp----~~plllvaG~d~~lrifqvDGk~-----------------N~~lqS~~l~~fPi~~a~f~p~G~- 270 (514)
T KOG2055|consen 213 HGGITSVQFHP----TAPLLLVAGLDGTLRIFQVDGKV-----------------NPKLQSIHLEKFPIQKAEFAPNGH- 270 (514)
T ss_pred cCCceEEEecC----CCceEEEecCCCcEEEEEecCcc-----------------ChhheeeeeccCccceeeecCCCc-
Confidence 47899999999 89999999999999999998642 223344444567899999999987
Q ss_pred eEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEE
Q 023643 105 ALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAY 184 (279)
Q Consensus 105 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 184 (279)
..+++++....++.||+.+.+..+. ..+.+.... .+....++|++++|+..+..|.|+
T Consensus 271 ~~i~~s~rrky~ysyDle~ak~~k~-~~~~g~e~~---------------------~~e~FeVShd~~fia~~G~~G~I~ 328 (514)
T KOG2055|consen 271 SVIFTSGRRKYLYSYDLETAKVTKL-KPPYGVEEK---------------------SMERFEVSHDSNFIAIAGNNGHIH 328 (514)
T ss_pred eEEEecccceEEEEeeccccccccc-cCCCCcccc---------------------hhheeEecCCCCeEEEcccCceEE
Confidence 5899999999999999965422211 111121111 257788999999999999999999
Q ss_pred EEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCC
Q 023643 185 CWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASES 264 (279)
Q Consensus 185 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 264 (279)
+.-..+++.+..++ -.+.|..++|+.+++.|++++.+|.|.+||++...+++++...- .-.-+++|.++++.
T Consensus 329 lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G-------~v~gts~~~S~ng~ 400 (514)
T KOG2055|consen 329 LLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDG-------SVHGTSLCISLNGS 400 (514)
T ss_pred eehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecC-------ccceeeeeecCCCc
Confidence 99999999999998 67889999999999999999999999999999999999885321 11236778889999
Q ss_pred EEEEEcCcceEEeCC
Q 023643 265 WLVRVRATNYVILFS 279 (279)
Q Consensus 265 ~l~~~~~d~~i~~wd 279 (279)
|||+||..|.|.|||
T Consensus 401 ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 401 YLATGSDSGIVNIYD 415 (514)
T ss_pred eEEeccCcceEEEec
Confidence 999999999999997
No 144
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=4.6e-23 Score=148.01 Aligned_cols=217 Identities=14% Similarity=0.185 Sum_probs=155.7
Q ss_pred eeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecC
Q 023643 21 REILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYG 100 (279)
Q Consensus 21 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 100 (279)
..+|.+-|.++.|.+ .|+++|+++.|++|+|||.+..... ..+....+.|.+.|..+.|.+
T Consensus 9 ~s~h~DlihdVs~D~----~GRRmAtCSsDq~vkI~d~~~~s~~---------------W~~Ts~Wrah~~Si~rV~WAh 69 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDF----YGRRMATCSSDQTVKIWDSTSDSGT---------------WSCTSSWRAHDGSIWRVVWAH 69 (361)
T ss_pred ccCCcceeeeeeecc----cCceeeeccCCCcEEEEeccCCCCc---------------eEEeeeEEecCCcEEEEEecC
Confidence 346888999999999 8999999999999999997543211 455677889999999999988
Q ss_pred CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC--CCeEEEec
Q 023643 101 GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ--GGAIFSAA 178 (279)
Q Consensus 101 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~ 178 (279)
..-++.+++++.|++++||.-.... ....+.+=.....+.+. ...|+.+.|.|. |-.|++++
T Consensus 70 PEfGqvvA~cS~Drtv~iWEE~~~~-----~~~~~~~Wv~~ttl~Ds-----------rssV~DV~FaP~hlGLklA~~~ 133 (361)
T KOG2445|consen 70 PEFGQVVATCSYDRTVSIWEEQEKS-----EEAHGRRWVRRTTLVDS-----------RSSVTDVKFAPKHLGLKLAAAS 133 (361)
T ss_pred ccccceEEEEecCCceeeeeecccc-----cccccceeEEEEEeecC-----------CcceeEEEecchhcceEEEEec
Confidence 6555699999999999999842110 00001011111111111 124899999994 55889999
Q ss_pred CCCeEEEEecCC------CcEEEEee-------cCCcceEEEEEcCC---CcEEEEecCC-----CeEEEEeCCCCc-eE
Q 023643 179 GDSCAYCWDVES------SRIKMVFK-------GHSDYLHCIVARNS---TNQIVTGSED-----GTARIWDCKSGK-CI 236 (279)
Q Consensus 179 ~d~~i~i~d~~~------~~~~~~~~-------~~~~~i~~i~~~~~---~~~l~~~~~d-----~~i~vwd~~~~~-~~ 236 (279)
.||.++||+... ..+..+++ .+..+..|+.|+|. ..+|+.|+.+ +.++||....+. ..
T Consensus 134 aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw 213 (361)
T KOG2445|consen 134 ADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKW 213 (361)
T ss_pred cCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCccee
Confidence 999999998754 23333443 35667789999984 5678888766 478888765432 22
Q ss_pred EEecCCccccccCcceeeeEEEEcCC----CCEEEEEcCcceEEeC
Q 023643 237 KVIDPVKDKQLKGVISCVSCITLDAS----ESWLVRVRATNYVILF 278 (279)
Q Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~d~~i~~w 278 (279)
..+ ..+.+|..+|+.++|.|+ ...||+++.|| |+||
T Consensus 214 ~kv-----a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~ 253 (361)
T KOG2445|consen 214 LKV-----AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIF 253 (361)
T ss_pred eee-----hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEE
Confidence 222 123789999999999996 36799999999 9987
No 145
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=2.6e-23 Score=158.35 Aligned_cols=203 Identities=16% Similarity=0.157 Sum_probs=162.7
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
.|.|+|||++.. .+.+.++.|...|+++.|.- ...+||+++..|.|.|-.+.++ .
T Consensus 100 ~~~Vkiwdl~~k--l~hr~lkdh~stvt~v~YN~----~DeyiAsvs~gGdiiih~~~t~-------------------~ 154 (673)
T KOG4378|consen 100 SGCVKIWDLRAK--LIHRFLKDHQSTVTYVDYNN----TDEYIASVSDGGDIIIHGTKTK-------------------Q 154 (673)
T ss_pred CceeeehhhHHH--HHhhhccCCcceeEEEEecC----CcceeEEeccCCcEEEEecccC-------------------c
Confidence 578999999954 55778899999999999999 8899999999999999999883 3
Q ss_pred ccccccCC-ccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 82 PDGFLHGH-DGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 82 ~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
....|... ...|.-+.|+|..+ .+|.+++.+|.|.+||+.. ..........|..
T Consensus 155 ~tt~f~~~sgqsvRll~ys~skr-~lL~~asd~G~VtlwDv~g---~sp~~~~~~~HsA--------------------- 209 (673)
T KOG4378|consen 155 KTTTFTIDSGQSVRLLRYSPSKR-FLLSIASDKGAVTLWDVQG---MSPIFHASEAHSA--------------------- 209 (673)
T ss_pred cccceecCCCCeEEEeecccccc-eeeEeeccCCeEEEEeccC---CCcccchhhhccC---------------------
Confidence 33444432 34466899999877 6889999999999999752 2222333333333
Q ss_pred CceeEEEcCCCC-eEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC-ceEEE
Q 023643 161 ENNAIAVDPQGG-AIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG-KCIKV 238 (279)
Q Consensus 161 ~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~ 238 (279)
+...|+|+|... +|++.+.|..|.+||++..+....+. ...+...++|+++|.+|++|+..|.|..||+|.. .++.+
T Consensus 210 P~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v 288 (673)
T KOG4378|consen 210 PCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAV 288 (673)
T ss_pred CcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceE
Confidence 257899999655 77889999999999999777666665 5678999999999999999999999999999974 46666
Q ss_pred ecCCccccccCcceeeeEEEEcCCC
Q 023643 239 IDPVKDKQLKGVISCVSCITLDASE 263 (279)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~~~~~ 263 (279)
+ ..|...|++++|-|..
T Consensus 289 ~--------sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 289 R--------SAHDASVTRVAFQPSP 305 (673)
T ss_pred e--------eecccceeEEEeeecc
Confidence 6 7888999999998764
No 146
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=4.4e-24 Score=162.47 Aligned_cols=218 Identities=14% Similarity=0.136 Sum_probs=168.0
Q ss_pred CCceeeeccccccc--cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643 2 CGDSTNWDEDAYRK--SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG 79 (279)
Q Consensus 2 dG~v~iw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 79 (279)
|..+++|.-++... ..+....+. .-.|++... ...++++|+..+.|+|||++.
T Consensus 56 dk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s----~S~y~~sgG~~~~Vkiwdl~~------------------- 110 (673)
T KOG4378|consen 56 DKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACAS----QSLYEISGGQSGCVKIWDLRA------------------- 110 (673)
T ss_pred ceeEEEecccCCCCccceeeccccc--hHHHHhhhh----cceeeeccCcCceeeehhhHH-------------------
Confidence 45677776544321 122222222 334444444 457999999999999999996
Q ss_pred ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643 80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV 159 (279)
Q Consensus 80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (279)
....+.+++|+..|+++.++-... +|++++..|.|.|..+.+...........+.
T Consensus 111 kl~hr~lkdh~stvt~v~YN~~De--yiAsvs~gGdiiih~~~t~~~tt~f~~~sgq----------------------- 165 (673)
T KOG4378|consen 111 KLIHRFLKDHQSTVTYVDYNNTDE--YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQ----------------------- 165 (673)
T ss_pred HHHhhhccCCcceeEEEEecCCcc--eeEEeccCCcEEEEecccCccccceecCCCC-----------------------
Confidence 667788899999999999998887 9999999999999998654322221111111
Q ss_pred CCceeEEEcCCCC-eEEEecCCCeEEEEecCCCcEEEEe-ecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCceE
Q 023643 160 PENNAIAVDPQGG-AIFSAAGDSCAYCWDVESSRIKMVF-KGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKCI 236 (279)
Q Consensus 160 ~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~ 236 (279)
.|+-+.|+|..+ +|.+++.+|.|.+||+....++..+ +.|..+...|+|+|. ..+|++.+.|..|.+||.++.+..
T Consensus 166 -svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~ 244 (673)
T KOG4378|consen 166 -SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST 244 (673)
T ss_pred -eEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc
Confidence 156788998766 6677899999999999988777765 569999999999995 678999999999999999988777
Q ss_pred EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
..+ ....+.+.++|.++|.+|++|+..|.|..||
T Consensus 245 ~~l---------~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 245 DRL---------TYSHPLSTVAFSECGTYLCAGNSKGELIAYD 278 (673)
T ss_pred cee---------eecCCcceeeecCCceEEEeecCCceEEEEe
Confidence 776 3345789999999999999999999999987
No 147
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.8e-22 Score=158.80 Aligned_cols=207 Identities=18% Similarity=0.323 Sum_probs=160.9
Q ss_pred eecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCC-ccCeEEEEecC
Q 023643 22 EILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGH-DGPAYDVKFYG 100 (279)
Q Consensus 22 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~ 100 (279)
..-+.+|.++||+. +.+.||.+-.+|.|.+|++... .-....+.++ ...|.+++|++
T Consensus 22 d~~Ps~I~slA~s~----kS~~lAvsRt~g~IEiwN~~~~------------------w~~~~vi~g~~drsIE~L~W~e 79 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSH----KSNQLAVSRTDGNIEIWNLSNN------------------WFLEPVIHGPEDRSIESLAWAE 79 (691)
T ss_pred eeeccceEEEEEec----cCCceeeeccCCcEEEEccCCC------------------ceeeEEEecCCCCceeeEEEcc
Confidence 34578999999999 7888999999999999999874 3344455554 46799999996
Q ss_pred CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCC
Q 023643 101 GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD 180 (279)
Q Consensus 101 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 180 (279)
.+ .|.+.+.+|+|.-||+.+.. ........ .+.|.+++.+|.+..+++|+.|
T Consensus 80 ~~---RLFS~g~sg~i~EwDl~~lk---~~~~~d~~----------------------gg~IWsiai~p~~~~l~Igcdd 131 (691)
T KOG2048|consen 80 GG---RLFSSGLSGSITEWDLHTLK---QKYNIDSN----------------------GGAIWSIAINPENTILAIGCDD 131 (691)
T ss_pred CC---eEEeecCCceEEEEecccCc---eeEEecCC----------------------CcceeEEEeCCccceEEeecCC
Confidence 66 79999999999999986542 22222111 1147999999999999999999
Q ss_pred CeEEEEecCCCcEEE--EeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEE
Q 023643 181 SCAYCWDVESSRIKM--VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCIT 258 (279)
Q Consensus 181 ~~i~i~d~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 258 (279)
|.++.++...++... .|....+.|.++.|+|++..|++|+.||.|++||..+++.+..+..+....-++...-|+++.
T Consensus 132 Gvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~ 211 (691)
T KOG2048|consen 132 GVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVL 211 (691)
T ss_pred ceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEE
Confidence 988888877665543 455567899999999999999999999999999999998887443322111133456788998
Q ss_pred EcCCCCEEEEEcCcceEEeCC
Q 023643 259 LDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 259 ~~~~~~~l~~~~~d~~i~~wd 279 (279)
|-.++ .|++|..-|+|.+||
T Consensus 212 ~Lrd~-tI~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 212 FLRDS-TIASGDSAGTVTFWD 231 (691)
T ss_pred EeecC-cEEEecCCceEEEEc
Confidence 88654 599999999999998
No 148
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=1.5e-22 Score=154.35 Aligned_cols=233 Identities=15% Similarity=0.202 Sum_probs=168.0
Q ss_pred Cceeeecccccccccee-eeee-cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 3 GDSTNWDEDAYRKSILK-EREI-LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 3 G~v~iw~~~~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
|.+.+|++.+....... .++. ...-|.|++|.+ +++ +++|.++|.|.||+..+ .
T Consensus 222 ~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~e----ngd-viTgDS~G~i~Iw~~~~-------------------~ 277 (626)
T KOG2106|consen 222 GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLE----NGD-VITGDSGGNILIWSKGT-------------------N 277 (626)
T ss_pred ceEEEEEccCCceEEEeeccccccceEEEEEEEcC----CCC-EEeecCCceEEEEeCCC-------------------c
Confidence 67889998776432111 2222 236799999999 676 67999999999999987 3
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCC-----------
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQH----------- 149 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 149 (279)
+..+....|.+.|.+++...+|. |+||+.|..|..||-+..+...... .....++..+.....
T Consensus 278 ~~~k~~~aH~ggv~~L~~lr~Gt---llSGgKDRki~~Wd~~y~k~r~~el---Pe~~G~iRtv~e~~~di~vGTtrN~i 351 (626)
T KOG2106|consen 278 RISKQVHAHDGGVFSLCMLRDGT---LLSGGKDRKIILWDDNYRKLRETEL---PEQFGPIRTVAEGKGDILVGTTRNFI 351 (626)
T ss_pred eEEeEeeecCCceEEEEEecCcc---EeecCccceEEeccccccccccccC---chhcCCeeEEecCCCcEEEeeccceE
Confidence 44444458999999999999994 7779999999999933211111100 111111211111111
Q ss_pred -------CCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC
Q 023643 150 -------KGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED 222 (279)
Q Consensus 150 -------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 222 (279)
.-....+.+..+...++.+|+.+++++++.|+.+++|+ ..+++.+.. -..+..|+.|+|.| .++.|...
T Consensus 352 L~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~ 427 (626)
T KOG2106|consen 352 LQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTAT 427 (626)
T ss_pred EEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeecc
Confidence 01111123344678899999999999999999999999 455555544 45778999999999 99999999
Q ss_pred CeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 223 GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 223 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
|...+.|.++...+..- .. ..++++++|+|+|.+||.|+.|+.|++|
T Consensus 428 G~w~V~d~e~~~lv~~~--------~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy 474 (626)
T KOG2106|consen 428 GRWFVLDTETQDLVTIH--------TD-NEQLSVVRYSPDGAFLAVGSHDNHIYIY 474 (626)
T ss_pred ceEEEEecccceeEEEE--------ec-CCceEEEEEcCCCCEEEEecCCCeEEEE
Confidence 99999999885555443 33 7899999999999999999999999987
No 149
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=3.1e-23 Score=156.07 Aligned_cols=244 Identities=16% Similarity=0.161 Sum_probs=173.1
Q ss_pred CCceeeeccccc--cccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccC---------
Q 023643 2 CGDSTNWDEDAY--RKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLS--------- 70 (279)
Q Consensus 2 dG~v~iw~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--------- 70 (279)
-|+|-+||+.+. ...-+.-+..|..+|.++.|+|. +...+.+.+.||+|++-|++.......+...
T Consensus 209 ~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~---n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~ 285 (498)
T KOG4328|consen 209 GGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPA---NTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSL 285 (498)
T ss_pred CCcEEEEecCCCCCccCceEEeccCCccccceEecCC---ChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeec
Confidence 388999998633 23445567889999999999995 8889999999999999999876544432221
Q ss_pred ---Ccccc----------eeee----ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeee
Q 023643 71 ---NSKVQ----------QLLG----IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINL 133 (279)
Q Consensus 71 ---~~~~~----------~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 133 (279)
.+... .++. +.....+.-|...|.+|+++|... .+|+|+|.|++.+|||++...........
T Consensus 286 d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~ls 364 (498)
T KOG4328|consen 286 DFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLS 364 (498)
T ss_pred cccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCc-hheeecccCcceeeeehhhhcCCCCccee
Confidence 11100 1111 233344566888999999999887 68999999999999999865333221111
Q ss_pred ccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecC----CCcEEEEeecCCc------c
Q 023643 134 QGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVE----SSRIKMVFKGHSD------Y 203 (279)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~~------~ 203 (279)
. ..|...|.+..|+|.+..|++.+.|..|+|||.. .-.+...+. |.. .
T Consensus 365 t---------------------~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT 422 (498)
T KOG4328|consen 365 T---------------------LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLT 422 (498)
T ss_pred c---------------------ccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCccccccc
Confidence 1 1122247999999998889999999999999983 334455544 322 2
Q ss_pred eEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEE-EEcCCCCEEEE-EcCcceEEeC
Q 023643 204 LHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCI-TLDASESWLVR-VRATNYVILF 278 (279)
Q Consensus 204 i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~-~~~d~~i~~w 278 (279)
....+|.|+..++++|-.-..|-|+|-..++.+..+..+. ...|.++ .|+|-+..+++ ++..|.|+||
T Consensus 423 ~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~-------~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 423 PFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE-------SSTIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred chhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc-------ccccccceeecccccceeccCCccceEEEE
Confidence 3345799999999999999999999988888777764321 1234443 69998884554 4567889887
No 150
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=7.4e-23 Score=159.04 Aligned_cols=247 Identities=15% Similarity=0.160 Sum_probs=176.7
Q ss_pred ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccccc---------ccCCcccceee---------
Q 023643 17 ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPL---------GLSNSKVQQLL--------- 78 (279)
Q Consensus 17 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---------~~~~~~~~~~~--------- 78 (279)
+-..+.+|++.|.++...| .|.+||+|+.||+|+||.+.++.+...+ .+.+.....++
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp----~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ 467 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDP----SGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVL 467 (733)
T ss_pred eeeeEeccCCeEEEEEecC----CcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceE
Confidence 3456789999999999999 8999999999999999999988766411 11111100000
Q ss_pred ---------------------------------e---------ccccccccCCccCeEEEEecCCCCceEEEEeeCC---
Q 023643 79 ---------------------------------G---------IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDD--- 113 (279)
Q Consensus 79 ---------------------------------~---------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d--- 113 (279)
. ..-++..-.|..+|..+.|+..|. ||++...+
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD--YlatV~~~~~~ 545 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD--YLATVMPDSGN 545 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc--eEEEeccCCCc
Confidence 0 011123334778899999999998 99988764
Q ss_pred CcEEEeecCCCccCcceeee--------ccCcccceEEeecCCCCCcccc---------CCCCCCceeEEEcCCCCeEEE
Q 023643 114 GRICGWRWKEFTESKVPINL--------QGNHVKPVLDLVNHQHKGPWGA---------LSPVPENNAIAVDPQGGAIFS 176 (279)
Q Consensus 114 g~i~iw~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~l~~ 176 (279)
..|.|+++...... ..+.. .-+...+.+-+.....-..++. ......|..++.+|.|..|+.
T Consensus 546 ~~VliHQLSK~~sQ-~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQ-SPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred ceEEEEeccccccc-CchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence 46889998643222 21111 1122222222223333222222 334456899999999999999
Q ss_pred ecCCCeEEEEecCCC-cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC------CC---ceEEEecCCcccc
Q 023643 177 AAGDSCAYCWDVESS-RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK------SG---KCIKVIDPVKDKQ 246 (279)
Q Consensus 177 ~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~------~~---~~~~~~~~~~~~~ 246 (279)
|+.|+.+..+|+.-. ++.++++.|...++.++|++.-.++++|+.||++.||.-. .. -++..+
T Consensus 625 gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L------- 697 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRL------- 697 (733)
T ss_pred ecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeec-------
Confidence 999999999999754 6778889999999999999999999999999999998532 11 133444
Q ss_pred ccCccee----eeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 247 LKGVISC----VSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 247 ~~~~~~~----v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
.+|... |..+.|+|...+|+++++||+|++|
T Consensus 698 -~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 698 -RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred -cCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 566544 8899999999999999999999998
No 151
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4e-23 Score=154.92 Aligned_cols=217 Identities=15% Similarity=0.158 Sum_probs=156.8
Q ss_pred EEEEECCC---CCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee--eccccccccCCccCeEEEEecCCCC
Q 023643 29 FRTVWGPS---KDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL--GIEPDGFLHGHDGPAYDVKFYGGNE 103 (279)
Q Consensus 29 ~~~~~~~~---~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~ 103 (279)
.|++|... ....|+++|.|+.|..|.|||+.-.....+.-.-.....+.. .++.-....+|+..|.+|+|+..-.
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 45666432 124578999999999999999975433322111111111110 0222334457999999999998766
Q ss_pred ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC-CeEEEecCCCe
Q 023643 104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG-GAIFSAAGDSC 182 (279)
Q Consensus 104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~ 182 (279)
+.|+|||.|.+|++||+.+.+.... +. ++.. .|.++.|+|.. ..|++|+.|++
T Consensus 257 -nVLaSgsaD~TV~lWD~~~g~p~~s---~~-~~~k---------------------~Vq~l~wh~~~p~~LLsGs~D~~ 310 (463)
T KOG0270|consen 257 -NVLASGSADKTVKLWDVDTGKPKSS---IT-HHGK---------------------KVQTLEWHPYEPSVLLSGSYDGT 310 (463)
T ss_pred -eeEEecCCCceEEEEEcCCCCccee---hh-hcCC---------------------ceeEEEecCCCceEEEeccccce
Confidence 6999999999999999986533222 21 1222 37899999854 48899999999
Q ss_pred EEEEecCCCcEEEEeecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCC-ceEEEecCCccccccCcceeeeEEEEc
Q 023643 183 AYCWDVESSRIKMVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSG-KCIKVIDPVKDKQLKGVISCVSCITLD 260 (279)
Q Consensus 183 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~ 260 (279)
+.+.|.|........-.-.+.|-.++|.|. ...++++..||+|+-+|+|.. +++.++ .+|...|++++++
T Consensus 311 V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~--------~AHd~~ISgl~~n 382 (463)
T KOG0270|consen 311 VALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL--------KAHDDEISGLSVN 382 (463)
T ss_pred EEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEE--------EeccCCcceEEec
Confidence 999999953222222124567889999995 567888899999999999985 888888 7999999999998
Q ss_pred CCC-CEEEEEcCcceEEeCC
Q 023643 261 ASE-SWLVRVRATNYVILFS 279 (279)
Q Consensus 261 ~~~-~~l~~~~~d~~i~~wd 279 (279)
+.- .+|+|++.|+.|.+|+
T Consensus 383 ~~~p~~l~t~s~d~~Vklw~ 402 (463)
T KOG0270|consen 383 IQTPGLLSTASTDKVVKLWK 402 (463)
T ss_pred CCCCcceeeccccceEEEEe
Confidence 854 5688999999999995
No 152
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.91 E-value=1.3e-22 Score=144.54 Aligned_cols=216 Identities=17% Similarity=0.210 Sum_probs=156.8
Q ss_pred eeeeecccceEEEEECCCCCCCCCEEEEecCC-------CcEEEEeCCCCCcccccccCCcccceeeecccccccc-CCc
Q 023643 19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSD-------GSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLH-GHD 90 (279)
Q Consensus 19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~ 90 (279)
+.+..|.++|+.++-+|. +...|+++..+ ..+.||.+....... .....+.+..+. .+-
T Consensus 57 kvf~h~agEvw~las~P~---d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S----------~~~tlE~v~~Ldteav 123 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPF---DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS----------NSSTLECVASLDTEAV 123 (370)
T ss_pred hhhhcCCcceehhhcCCC---CCceEEEEEeccCCCcceeeEEEEecccccCcc----------ccchhhHhhcCCHHHh
Confidence 466778899999999994 77888887553 246899987532210 111134445554 456
Q ss_pred cCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC-
Q 023643 91 GPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP- 169 (279)
Q Consensus 91 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 169 (279)
+.|.|+.|.|++. .+++-. |..|.+|++................. .....++-+|+|
T Consensus 124 g~i~cvew~Pns~--klasm~-dn~i~l~~l~ess~~vaev~ss~s~e-------------------~~~~ftsg~WspH 181 (370)
T KOG1007|consen 124 GKINCVEWEPNSD--KLASMD-DNNIVLWSLDESSKIVAEVLSSESAE-------------------MRHSFTSGAWSPH 181 (370)
T ss_pred CceeeEEEcCCCC--eeEEec-cCceEEEEcccCcchheeeccccccc-------------------ccceecccccCCC
Confidence 7899999999987 777766 89999999976543211111111000 001136678998
Q ss_pred -CCCeEEEecCCCeEEEEecCCCcEEEEee-cCCcceEEEEEcCCC-cEEEEecCCCeEEEEeCCCCc-eEEEecCCccc
Q 023643 170 -QGGAIFSAAGDSCAYCWDVESSRIKMVFK-GHSDYLHCIVARNST-NQIVTGSEDGTARIWDCKSGK-CIKVIDPVKDK 245 (279)
Q Consensus 170 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~ 245 (279)
+++.+++. .|+++..||+++.+....++ .|...|+.+.|+|+. .+|++|+.||.|++||.|..+ ++..+
T Consensus 182 Hdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el------ 254 (370)
T KOG1007|consen 182 HDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL------ 254 (370)
T ss_pred CccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc------
Confidence 66677655 48999999999987777664 588889999999974 568999999999999998754 55666
Q ss_pred cccCcceeeeEEEEcCC-CCEEEEEcCcceEEeC
Q 023643 246 QLKGVISCVSCITLDAS-ESWLVRVRATNYVILF 278 (279)
Q Consensus 246 ~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~w 278 (279)
.+|..+|+++.|+|. .++|++|+.|..|.+|
T Consensus 255 --~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Ls 286 (370)
T KOG1007|consen 255 --PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLS 286 (370)
T ss_pred --CCCceEEEEEEecCccceEEEecCCCceeEEE
Confidence 789999999999995 6788899999999886
No 153
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.91 E-value=6.4e-23 Score=151.89 Aligned_cols=212 Identities=18% Similarity=0.147 Sum_probs=161.1
Q ss_pred eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643 19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF 98 (279)
Q Consensus 19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 98 (279)
....+|.++|..++|+|- +...||+|+.|.+|.||++........+ .+++..+.+|...|.-+.|
T Consensus 75 P~v~GHt~~vLDi~w~Pf---nD~vIASgSeD~~v~vW~IPe~~l~~~l------------tepvv~L~gH~rrVg~V~w 139 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPF---NDCVIASGSEDTKVMVWQIPENGLTRDL------------TEPVVELYGHQRRVGLVQW 139 (472)
T ss_pred CCccCccccccccccCcc---CCceeecCCCCceEEEEECCCcccccCc------------ccceEEEeecceeEEEEee
Confidence 356789999999999995 8889999999999999999764322221 4677889999999999999
Q ss_pred cCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec
Q 023643 99 YGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA 178 (279)
Q Consensus 99 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 178 (279)
+|... +.|+|++.|.+|.+|++.++. ....+. | ...|.+++|+.+|.+|++.+
T Consensus 140 HPtA~-NVLlsag~Dn~v~iWnv~tge---ali~l~--h---------------------pd~i~S~sfn~dGs~l~Ttc 192 (472)
T KOG0303|consen 140 HPTAP-NVLLSAGSDNTVSIWNVGTGE---ALITLD--H---------------------PDMVYSMSFNRDGSLLCTTC 192 (472)
T ss_pred cccch-hhHhhccCCceEEEEeccCCc---eeeecC--C---------------------CCeEEEEEeccCCceeeeec
Confidence 99876 699999999999999987542 222222 1 12379999999999999999
Q ss_pred CCCeEEEEecCCCcEEEEeecCCcc-eEEEEEcCCCcEEEEec---CCCeEEEEeCCCCceEEEecCCccccccCcceee
Q 023643 179 GDSCAYCWDVESSRIKMVFKGHSDY-LHCIVARNSTNQIVTGS---EDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCV 254 (279)
Q Consensus 179 ~d~~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v 254 (279)
.|..|+|||.++++.+.+-.+|.+. -..+.|-.++..+-+|- .+..+.+||....+.-..+.. -...+.|
T Consensus 193 kDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~e------lDtSnGv 266 (472)
T KOG0303|consen 193 KDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQE------LDTSNGV 266 (472)
T ss_pred ccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEE------eccCCce
Confidence 9999999999999999988888753 34455667788555443 578899999876433222211 1333456
Q ss_pred eEEEEcCCCCEEE-EEcCcceEEeC
Q 023643 255 SCITLDASESWLV-RVRATNYVILF 278 (279)
Q Consensus 255 ~~~~~~~~~~~l~-~~~~d~~i~~w 278 (279)
.---|++|...++ +|-.|+.|+-|
T Consensus 267 l~PFyD~dt~ivYl~GKGD~~IRYy 291 (472)
T KOG0303|consen 267 LLPFYDPDTSIVYLCGKGDSSIRYF 291 (472)
T ss_pred EEeeecCCCCEEEEEecCCcceEEE
Confidence 6667888877665 56679999876
No 154
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=4.1e-23 Score=159.23 Aligned_cols=219 Identities=18% Similarity=0.272 Sum_probs=167.5
Q ss_pred eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEec
Q 023643 20 EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFY 99 (279)
Q Consensus 20 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 99 (279)
++..|...|..++|.| ....|++++.||+|++|+++....... ...+++.+|++|.++|.|++..
T Consensus 289 tl~s~~d~ir~l~~~~----sep~lit~sed~~lk~WnLqk~~~s~~-----------~~~epi~tfraH~gPVl~v~v~ 353 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHP----SEPVLITASEDGTLKLWNLQKAKKSAE-----------KDVEPILTFRAHEGPVLCVVVP 353 (577)
T ss_pred eeecchhhhhhhhcCC----CCCeEEEeccccchhhhhhcccCCccc-----------cceeeeEEEecccCceEEEEec
Confidence 6778999999999999 788899999999999999944111101 1168889999999999999999
Q ss_pred CCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC
Q 023643 100 GGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG 179 (279)
Q Consensus 100 ~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 179 (279)
+++. .+++|+.||+|+.|++...... ...+....+.. ....+..+++.+++++....|++++.
T Consensus 354 ~n~~--~~ysgg~Dg~I~~w~~p~n~dp-----~ds~dp~vl~~----------~l~Ghtdavw~l~~s~~~~~Llscs~ 416 (577)
T KOG0642|consen 354 SNGE--HCYSGGIDGTIRCWNLPPNQDP-----DDSYDPSVLSG----------TLLGHTDAVWLLALSSTKDRLLSCSS 416 (577)
T ss_pred CCce--EEEeeccCceeeeeccCCCCCc-----ccccCcchhcc----------ceeccccceeeeeecccccceeeecC
Confidence 9998 9999999999999986421100 00000000000 01122335789999998889999999
Q ss_pred CCeEEEEecCCCcEEEEe---------------------------------------------ec-------CCcceEEE
Q 023643 180 DSCAYCWDVESSRIKMVF---------------------------------------------KG-------HSDYLHCI 207 (279)
Q Consensus 180 d~~i~i~d~~~~~~~~~~---------------------------------------------~~-------~~~~i~~i 207 (279)
||+++.|+.....+ .+| .. -...+..+
T Consensus 417 DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~v 495 (577)
T KOG0642|consen 417 DGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKV 495 (577)
T ss_pred CceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceE
Confidence 99999998764333 110 00 01235567
Q ss_pred EEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 208 VARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 208 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.++|.....+++..|+.|+++|..+++.+... ..|...++++++.|+|.+|++++.|+.+++|.
T Consensus 496 Vs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~--------~a~~~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 496 VSHPTADITFTAHEDRSIRFFDNKTGKILHSM--------VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred EecCCCCeeEecccCCceecccccccccchhe--------eeccceecceeecCCCceEEeecCCceeehhh
Confidence 77888889999999999999999999999887 78889999999999999999999999999984
No 155
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=1.2e-21 Score=154.59 Aligned_cols=252 Identities=17% Similarity=0.167 Sum_probs=180.0
Q ss_pred CCCceeeecccccc--c---cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccc
Q 023643 1 MCGDSTNWDEDAYR--K---SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQ 75 (279)
Q Consensus 1 ~dG~v~iw~~~~~~--~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 75 (279)
||.++-+|.++... . ..+-...+.....+...|+| +++.+++-+..|-.++|.......
T Consensus 287 aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~----n~~~ii~~g~~Gg~hlWkt~d~~~------------ 350 (764)
T KOG1063|consen 287 ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP----NSNVIIAHGRTGGFHLWKTKDKTF------------ 350 (764)
T ss_pred cCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC----CCCEEEEecccCcEEEEeccCccc------------
Confidence 68899999876652 1 11223334456789999999 899999999999999999322100
Q ss_pred eeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCc-c-------------Cc-------ceeeec
Q 023643 76 QLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFT-E-------------SK-------VPINLQ 134 (279)
Q Consensus 76 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~-~-------------~~-------~~~~~~ 134 (279)
......+.||.+.|.++.|.|.|. +|+++|.|.+-|+|-.-..+ + .. ...-..
T Consensus 351 ----w~~~~~iSGH~~~V~dv~W~psGe--flLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVS 424 (764)
T KOG1063|consen 351 ----WTQEPVISGHVDGVKDVDWDPSGE--FLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVS 424 (764)
T ss_pred ----eeeccccccccccceeeeecCCCC--EEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeee
Confidence 345566789999999999999998 99999999999988643000 0 00 000000
Q ss_pred cCccc--ceE---------------------------------EeecCC------CCCcc--------------------
Q 023643 135 GNHVK--PVL---------------------------------DLVNHQ------HKGPW-------------------- 153 (279)
Q Consensus 135 ~~~~~--~~~---------------------------------~~~~~~------~~~~~-------------------- 153 (279)
+...+ .++ .+.+.. ..+..
T Consensus 425 gAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP 504 (764)
T KOG1063|consen 425 GADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPP 504 (764)
T ss_pred cccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCC
Confidence 00000 000 000000 00000
Q ss_pred ---------------ccCCCCCCceeEEEcCCCCeEEEecCC-----CeEEEEecCCCcEEEEeecCCcceEEEEEcCCC
Q 023643 154 ---------------GALSPVPENNAIAVDPQGGAIFSAAGD-----SCAYCWDVESSRIKMVFKGHSDYLHCIVARNST 213 (279)
Q Consensus 154 ---------------~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~ 213 (279)
..+.|...|.+++.+|+++++++++.. ..|++|+..+...+..+.+|+-.|+.++|+||+
T Consensus 505 ~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg 584 (764)
T KOG1063|consen 505 TEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDG 584 (764)
T ss_pred hHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCC
Confidence 003345679999999999999998764 469999999999999999999999999999999
Q ss_pred cEEEEecCCCeEEEEeCCCCce-EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 214 NQIVTGSEDGTARIWDCKSGKC-IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 214 ~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
++|++.|.|+++.+|....... ...+.. .+.|+.-|+.+.|+|++.+++|+|.|.+|.+|.
T Consensus 585 ~~LLsvsRDRt~sl~~~~~~~~~e~~fa~-----~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 585 RYLLSVSRDRTVSLYEVQEDIKDEFRFAC-----LKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred cEEEEeecCceEEeeeeecccchhhhhcc-----ccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 9999999999999998754321 111111 278999999999999999999999999999994
No 156
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=2.4e-22 Score=155.07 Aligned_cols=223 Identities=18% Similarity=0.286 Sum_probs=163.9
Q ss_pred CCCceeeecccc------ccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccc
Q 023643 1 MCGDSTNWDEDA------YRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKV 74 (279)
Q Consensus 1 ~dG~v~iw~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 74 (279)
.||++++|+++. ...+.+.++.+|.++|.|+++.+ ++..+.+|+.||+|+.|++... .. .+..
T Consensus 314 ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~----n~~~~ysgg~Dg~I~~w~~p~n-~d-p~ds----- 382 (577)
T KOG0642|consen 314 EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS----NGEHCYSGGIDGTIRCWNLPPN-QD-PDDS----- 382 (577)
T ss_pred cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC----CceEEEeeccCceeeeeccCCC-CC-cccc-----
Confidence 379999999832 12345678999999999999999 9999999999999999987621 11 0000
Q ss_pred ceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccc-eEEeecCC-----
Q 023643 75 QQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKP-VLDLVNHQ----- 148 (279)
Q Consensus 75 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----- 148 (279)
.--......+.||.+.|+.+++++... .|++++.||++++|+...... +.+.....+..+ ..++....
T Consensus 383 --~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~--~~f~~~~e~g~Plsvd~~ss~~a~~~ 456 (577)
T KOG0642|consen 383 --YDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP--CTFGEPKEHGYPLSVDRTSSRPAHSL 456 (577)
T ss_pred --cCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc--cccCCccccCCcceEeeccchhHhhh
Confidence 000233457789999999999999887 899999999999999754322 111111111111 11110000
Q ss_pred ------CC----------------CccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEE
Q 023643 149 ------HK----------------GPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHC 206 (279)
Q Consensus 149 ------~~----------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~ 206 (279)
.. ...........+.-+.++|.....+++..|+.|+++|..+++++.....|...+++
T Consensus 457 ~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svts 536 (577)
T KOG0642|consen 457 ASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTS 536 (577)
T ss_pred hhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecc
Confidence 00 00000111245778889999999999999999999999999999999999999999
Q ss_pred EEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 207 IVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 207 i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
+++.|+|.+|++++.|+.+++|.+....++....
T Consensus 537 lai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 537 LAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred eeecCCCceEEeecCCceeehhhccchheeeccc
Confidence 9999999999999999999999998877777663
No 157
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.90 E-value=1.5e-22 Score=142.51 Aligned_cols=227 Identities=10% Similarity=0.073 Sum_probs=159.5
Q ss_pred eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccccccc-CCccCeEEE
Q 023643 18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLH-GHDGPAYDV 96 (279)
Q Consensus 18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~ 96 (279)
...+++|.+.|+++.|.. + .+|.+|..-|.|++|++.+ .+....++ .|...|+.+
T Consensus 7 ~fvLRp~~~~v~s~~fqa----~-~rL~sg~~~G~V~~w~lqt-------------------~r~~~~~r~~g~~~it~l 62 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQA----N-ERLMSGLSVGIVKMWVLQT-------------------ERDLPLIRLFGRLFITNL 62 (323)
T ss_pred eeEeccccchheehhhcc----c-hhhhcccccceEEEEEeec-------------------Cccchhhhhhccceeece
Confidence 445678999999999988 4 4589999999999999998 56667777 578889999
Q ss_pred EecCCCCceEEEEeeCCCcEEEeecCCCcc-----------CcceeeeccCcccceEEeecCCCC----------Cc--c
Q 023643 97 KFYGGNEDALLLSCGDDGRICGWRWKEFTE-----------SKVPINLQGNHVKPVLDLVNHQHK----------GP--W 153 (279)
Q Consensus 97 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~----------~~--~ 153 (279)
.-.|++ .+.+-+.|+.+.+|++..... ..+...+..+.....+.+..+... .+ .
T Consensus 63 q~~p~d---~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv 139 (323)
T KOG0322|consen 63 QSIPND---SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQV 139 (323)
T ss_pred eecCCc---chhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCcccee
Confidence 999985 699999999999999864210 001111111100000000000000 00 0
Q ss_pred -----ccCCCCCCceeEEEcCC-CC--eEEEecCCCeEEEEecCCCcEEEE----------eecCCc-------------
Q 023643 154 -----GALSPVPENNAIAVDPQ-GG--AIFSAAGDSCAYCWDVESSRIKMV----------FKGHSD------------- 202 (279)
Q Consensus 154 -----~~~~~~~~i~~~~~~~~-~~--~l~~~~~d~~i~i~d~~~~~~~~~----------~~~~~~------------- 202 (279)
......+.+.|..+..+ +. ++++|..+|.+.+||+.++..+-. ...|..
T Consensus 140 ~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r 219 (323)
T KOG0322|consen 140 QIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR 219 (323)
T ss_pred EccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC
Confidence 00112345666665432 22 567788999999999987622211 111222
Q ss_pred ---------------------------------ceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccC
Q 023643 203 ---------------------------------YLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKG 249 (279)
Q Consensus 203 ---------------------------------~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 249 (279)
.|..+..-||++.+++++.|+.||||..++.+++..+ ..
T Consensus 220 Gisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL--------ky 291 (323)
T KOG0322|consen 220 GISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL--------KY 291 (323)
T ss_pred CcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh--------hh
Confidence 3445666788899999999999999999999999998 78
Q ss_pred cceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 250 VISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 250 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
|...|++++|+|+...+|+++.|+.|.+|+
T Consensus 292 Hsagvn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 292 HSAGVNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred hhcceeEEEeCCCCchhhhccCCceEEeee
Confidence 899999999999999999999999999996
No 158
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7.8e-22 Score=142.56 Aligned_cols=166 Identities=13% Similarity=0.134 Sum_probs=120.2
Q ss_pred ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCc-----cCcceeeeccCcccceEEeecCCCCCccc
Q 023643 80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFT-----ESKVPINLQGNHVKPVLDLVNHQHKGPWG 154 (279)
Q Consensus 80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (279)
++.+..+......-+..+.+|+|. ++++++.-.-|++|.+--.+ +......++++
T Consensus 218 Gq~L~~idtnq~~n~~aavSP~GR--Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH------------------ 277 (420)
T KOG2096|consen 218 GQLLQSIDTNQSSNYDAAVSPDGR--FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH------------------ 277 (420)
T ss_pred CceeeeeccccccccceeeCCCCc--EEEEecCCCCceEEEEEeccCcchhhhhhhheeccc------------------
Confidence 344444444455556778899998 99999999999999963211 11222233332
Q ss_pred cCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCC-------CcEEEEee----cCCcceEEEEEcCCCcEEEEecCCC
Q 023643 155 ALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVES-------SRIKMVFK----GHSDYLHCIVARNSTNQIVTGSEDG 223 (279)
Q Consensus 155 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------~~~~~~~~----~~~~~i~~i~~~~~~~~l~~~~~d~ 223 (279)
...|..++|+++...+++.+.||++++||++- .+.+.+.. ...+....++++|.|+.|+.+ ...
T Consensus 278 ----~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs 352 (420)
T KOG2096|consen 278 ----QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGS 352 (420)
T ss_pred ----hhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCC
Confidence 22489999999999999999999999999862 12222221 112334478999999988765 466
Q ss_pred eEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 224 TARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 224 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
.+++|..++|+....++ ..|...|++++|+++|++++|++ |..++++
T Consensus 353 ~l~~~~se~g~~~~~~e-------~~h~~~Is~is~~~~g~~~atcG-dr~vrv~ 399 (420)
T KOG2096|consen 353 DLKVFASEDGKDYPELE-------DIHSTTISSISYSSDGKYIATCG-DRYVRVI 399 (420)
T ss_pred ceEEEEcccCccchhHH-------HhhcCceeeEEecCCCcEEeeec-ceeeeee
Confidence 79999999998887775 68899999999999999999986 4556553
No 159
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.90 E-value=1.7e-21 Score=138.95 Aligned_cols=212 Identities=12% Similarity=0.195 Sum_probs=153.5
Q ss_pred ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCC
Q 023643 23 ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGN 102 (279)
Q Consensus 23 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 102 (279)
.+-+.|.|+.|.| ++..+++-. |..|.+|++........ .-+...-.+|+...++-+|+|..
T Consensus 121 eavg~i~cvew~P----ns~klasm~-dn~i~l~~l~ess~~va-------------ev~ss~s~e~~~~ftsg~WspHH 182 (370)
T KOG1007|consen 121 EAVGKINCVEWEP----NSDKLASMD-DNNIVLWSLDESSKIVA-------------EVLSSESAEMRHSFTSGAWSPHH 182 (370)
T ss_pred HHhCceeeEEEcC----CCCeeEEec-cCceEEEEcccCcchhe-------------eecccccccccceecccccCCCC
Confidence 3456899999999 889888876 77999999987533110 00011112366678889999966
Q ss_pred CceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCC-eEEEecCCC
Q 023643 103 EDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG-AIFSAAGDS 181 (279)
Q Consensus 103 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~ 181 (279)
+++.+++.+ |++++.||+++......+..- |.. .|..+.|+|+-+ +|++++.||
T Consensus 183 dgnqv~tt~-d~tl~~~D~RT~~~~~sI~dA---Hgq---------------------~vrdlDfNpnkq~~lvt~gDdg 237 (370)
T KOG1007|consen 183 DGNQVATTS-DSTLQFWDLRTMKKNNSIEDA---HGQ---------------------RVRDLDFNPNKQHILVTCGDDG 237 (370)
T ss_pred ccceEEEeC-CCcEEEEEccchhhhcchhhh---hcc---------------------eeeeccCCCCceEEEEEcCCCc
Confidence 655777765 899999999865333332222 222 268899999876 678899999
Q ss_pred eEEEEecCC-CcEEEEeecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCceEEEec-------------------
Q 023643 182 CAYCWDVES-SRIKMVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKCIKVID------------------- 240 (279)
Q Consensus 182 ~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~------------------- 240 (279)
.|++||++. ..++.++.+|..+|+++.|+|. .++|++|+.|..|.+|...+-.....+.
T Consensus 238 yvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kp 317 (370)
T KOG1007|consen 238 YVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKP 317 (370)
T ss_pred cEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccc
Confidence 999999986 5688999999999999999995 6789999999999999764322111111
Q ss_pred --CCccccccCcceeeeEEEEcCCCCE-EEEEcCcceEEe
Q 023643 241 --PVKDKQLKGVISCVSCITLDASESW-LVRVRATNYVIL 277 (279)
Q Consensus 241 --~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~ 277 (279)
......+..|...|.+++|+.-..+ +|+-+.||.+.|
T Consensus 318 L~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 318 LQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred ccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 0011255789999999999986665 556699998865
No 160
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.90 E-value=2.8e-21 Score=155.25 Aligned_cols=254 Identities=15% Similarity=0.179 Sum_probs=177.7
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
++.+.+|+++... .....+ .-..+|+++.|+|. +++++|.|..+|+|.+||+........ ..
T Consensus 221 ~~~~~vW~~~~p~-~Pe~~~-~~~s~v~~~~f~p~---~p~ll~gG~y~GqV~lWD~~~~~~~~~-------------s~ 282 (555)
T KOG1587|consen 221 DGVLLVWSLKNPN-TPELVL-ESPSEVTCLKFCPF---DPNLLAGGCYNGQVVLWDLRKGSDTPP-------------SG 282 (555)
T ss_pred CceEEEEecCCCC-CceEEE-ecCCceeEEEeccC---CcceEEeeccCceEEEEEccCCCCCCC-------------cc
Confidence 3568899988762 122222 24588999999995 899999999999999999987532110 01
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeee----------------------------
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINL---------------------------- 133 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---------------------------- 133 (279)
.......|..++..+.|..+..+.-|++++.||.|..|+++...........
T Consensus 283 ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~ 362 (555)
T KOG1587|consen 283 LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNH 362 (555)
T ss_pred cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCce
Confidence 1122235899999999987655335999999999999998764321111100
Q ss_pred --ccCcccceEEeecCCCC-C-------ccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecC-CCcEEEEeecCCc
Q 023643 134 --QGNHVKPVLDLVNHQHK-G-------PWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVE-SSRIKMVFKGHSD 202 (279)
Q Consensus 134 --~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~ 202 (279)
-|...+.++.....+.. . ......+.+.|+++.++|-+..++..+.|.+++||... ...++..+..+..
T Consensus 363 FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~ 442 (555)
T KOG1587|consen 363 FIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPD 442 (555)
T ss_pred EEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccc
Confidence 00111111111111111 1 11334567789999999988766666669999999988 7788888888888
Q ss_pred ceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 203 YLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 203 ~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+++++|||. ...++++..||.|.+||+........... ..+....+.+.|+++|+.|++|...|.+++|+
T Consensus 443 ~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~------~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 443 YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQ------KVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred eeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccc------cccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 9999999995 57889999999999999976543333211 23355678888999999999999999999874
No 161
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=6.7e-22 Score=147.60 Aligned_cols=193 Identities=13% Similarity=0.141 Sum_probs=146.3
Q ss_pred EEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEE
Q 023643 29 FRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLL 108 (279)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 108 (279)
..++|++ ++..|++|+.||++|||+..+ ...+.....|.+.|.++.|+|+++ +|+
T Consensus 148 k~vaf~~----~gs~latgg~dg~lRv~~~Ps-------------------~~t~l~e~~~~~eV~DL~FS~dgk--~la 202 (398)
T KOG0771|consen 148 KVVAFNG----DGSKLATGGTDGTLRVWEWPS-------------------MLTILEEIAHHAEVKDLDFSPDGK--FLA 202 (398)
T ss_pred eEEEEcC----CCCEeeeccccceEEEEecCc-------------------chhhhhhHhhcCccccceeCCCCc--EEE
Confidence 6789999 899999999999999999776 455666777999999999999998 999
Q ss_pred EeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC---C--eEEEecCCCeE
Q 023643 109 SCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG---G--AIFSAAGDSCA 183 (279)
Q Consensus 109 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~--~l~~~~~d~~i 183 (279)
+-+.| ..+||+.++............. .....+.|+.++ . .++....-+.|
T Consensus 203 sig~d-~~~VW~~~~g~~~a~~t~~~k~-----------------------~~~~~cRF~~d~~~~~l~laa~~~~~~~v 258 (398)
T KOG0771|consen 203 SIGAD-SARVWSVNTGAALARKTPFSKD-----------------------EMFSSCRFSVDNAQETLRLAASQFPGGGV 258 (398)
T ss_pred EecCC-ceEEEEeccCchhhhcCCcccc-----------------------hhhhhceecccCCCceEEEEEecCCCCce
Confidence 99999 9999998765211111111110 013456676655 2 22333345667
Q ss_pred EEEecCCCcE-----EEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEE
Q 023643 184 YCWDVESSRI-----KMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCIT 258 (279)
Q Consensus 184 ~i~d~~~~~~-----~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 258 (279)
+.||+...+- .++.......|.+++.+++|++++.|+.||.|.|++..+.+.++.++ +.|...|+.+.
T Consensus 259 ~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk-------~aH~~~VT~lt 331 (398)
T KOG0771|consen 259 RLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVK-------EAHLGFVTGLT 331 (398)
T ss_pred eEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeeh-------hhheeeeeeEE
Confidence 7777654321 11222234579999999999999999999999999999999888886 78999999999
Q ss_pred EcCCCCEEEEEcCcceEEe
Q 023643 259 LDASESWLVRVRATNYVIL 277 (279)
Q Consensus 259 ~~~~~~~l~~~~~d~~i~~ 277 (279)
|+|+.+++++.+.|....+
T Consensus 332 F~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 332 FSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred EcCCcCcccccccCCceeE
Confidence 9999999999888877655
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.4e-22 Score=168.00 Aligned_cols=206 Identities=18% Similarity=0.292 Sum_probs=157.7
Q ss_pred ccceEEEEECCCCCCCCC----EEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecC
Q 023643 25 TRTVFRTVWGPSKDGSPD----TIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYG 100 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~----~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 100 (279)
....+.|+|.+ .+. +||.|..||.|.+||...-..... ...+.....|.+.|..+.|++
T Consensus 64 ~~rF~kL~W~~----~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~-------------~~~la~~~~h~G~V~gLDfN~ 126 (1049)
T KOG0307|consen 64 SNRFNKLAWGS----YGSHSHGLIAGGLEDGNIVLYDPASIIANAS-------------EEVLATKSKHTGPVLGLDFNP 126 (1049)
T ss_pred cccceeeeecc----cCCCccceeeccccCCceEEecchhhccCcc-------------hHHHhhhcccCCceeeeeccc
Confidence 46788999998 444 488999999999999876210000 345667778999999999999
Q ss_pred CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC-CCeEEEecC
Q 023643 101 GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ-GGAIFSAAG 179 (279)
Q Consensus 101 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~ 179 (279)
... ++|++|+.||.|.|||++..... ..+.. ......|.+++|+.. ...|++++.
T Consensus 127 ~q~-nlLASGa~~geI~iWDlnn~~tP---~~~~~--------------------~~~~~eI~~lsWNrkvqhILAS~s~ 182 (1049)
T KOG0307|consen 127 FQG-NLLASGADDGEILIWDLNKPETP---FTPGS--------------------QAPPSEIKCLSWNRKVSHILASGSP 182 (1049)
T ss_pred cCC-ceeeccCCCCcEEEeccCCcCCC---CCCCC--------------------CCCcccceEeccchhhhHHhhccCC
Confidence 876 69999999999999999753221 11111 112224899999974 447888999
Q ss_pred CCeEEEEecCCCcEEEEeecCCc--ceEEEEEcCCC-cEEEEecCCC---eEEEEeCCCC-ceEEEecCCccccccCcce
Q 023643 180 DSCAYCWDVESSRIKMVFKGHSD--YLHCIVARNST-NQIVTGSEDG---TARIWDCKSG-KCIKVIDPVKDKQLKGVIS 252 (279)
Q Consensus 180 d~~i~i~d~~~~~~~~~~~~~~~--~i~~i~~~~~~-~~l~~~~~d~---~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~ 252 (279)
+|.+.|||++..+++-.+..+.. .+..++|+|+. ..|++++.|. .|.+||+|.- .+++++ .+|..
T Consensus 183 sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~--------~~H~~ 254 (1049)
T KOG0307|consen 183 SGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL--------EGHQR 254 (1049)
T ss_pred CCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh--------ccccc
Confidence 99999999999988887775554 46789999974 5566666554 4999999864 455666 68999
Q ss_pred eeeEEEEcCCC-CEEEEEcCcceEEeCC
Q 023643 253 CVSCITLDASE-SWLVRVRATNYVILFS 279 (279)
Q Consensus 253 ~v~~~~~~~~~-~~l~~~~~d~~i~~wd 279 (279)
.|.++.|++.+ ++|++++.|+.|.+|+
T Consensus 255 GilslsWc~~D~~lllSsgkD~~ii~wN 282 (1049)
T KOG0307|consen 255 GILSLSWCPQDPRLLLSSGKDNRIICWN 282 (1049)
T ss_pred ceeeeccCCCCchhhhcccCCCCeeEec
Confidence 99999999966 8899999999999996
No 163
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.88 E-value=1.9e-21 Score=152.75 Aligned_cols=111 Identities=14% Similarity=0.232 Sum_probs=99.8
Q ss_pred CceeEEEcC-CCCeEEEecCCCeEEEEecCCC-------cEEEEeecCCcceEEEEEcC-CCcEEEEecCCCeEEEEeCC
Q 023643 161 ENNAIAVDP-QGGAIFSAAGDSCAYCWDVESS-------RIKMVFKGHSDYLHCIVARN-STNQIVTGSEDGTARIWDCK 231 (279)
Q Consensus 161 ~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~ 231 (279)
.|+.+.|+| |...|++++.||.|++|.+..+ .+...+..|...|+.+.|+| -...|++++.|.+|++||++
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 466788988 6668999999999999998753 45567888999999999999 47889999999999999999
Q ss_pred CCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 232 SGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+++....+ .+|...|..++|+|+|+.+|+.+.||+|++|.
T Consensus 709 ~~~~~~~l--------~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 709 NAKLYSRL--------VGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred hhhhhhee--------ccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 99998888 79999999999999999999999999999984
No 164
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=1.7e-22 Score=146.26 Aligned_cols=213 Identities=16% Similarity=0.217 Sum_probs=157.2
Q ss_pred ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCC
Q 023643 23 ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGN 102 (279)
Q Consensus 23 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 102 (279)
.|.+..+.++|+-+......++|+|+.-|.|+|.|+.+ .+....+.+|...|+.+.++|..
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~-------------------~~~~~~~~ghG~sINeik~~p~~ 147 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS-------------------GQCSKNYRGHGGSINEIKFHPDR 147 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch-------------------hhhccceeccCccchhhhcCCCC
Confidence 36778888999864333356889999999999999998 67888899999999999999998
Q ss_pred CceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCe
Q 023643 103 EDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSC 182 (279)
Q Consensus 103 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 182 (279)
. ++++++|.|.+||+|++++. .++..+.+- ..|...|.++.|++++.++++++.|.+
T Consensus 148 ~-qlvls~SkD~svRlwnI~~~---~Cv~VfGG~-------------------egHrdeVLSvD~~~~gd~i~ScGmDhs 204 (385)
T KOG1034|consen 148 P-QLVLSASKDHSVRLWNIQTD---VCVAVFGGV-------------------EGHRDEVLSVDFSLDGDRIASCGMDHS 204 (385)
T ss_pred C-cEEEEecCCceEEEEeccCC---eEEEEeccc-------------------ccccCcEEEEEEcCCCCeeeccCCcce
Confidence 7 69999999999999998754 344443331 112224899999999999999999999
Q ss_pred EEEEecCCCcEEE----------------------------EeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeC-CCC
Q 023643 183 AYCWDVESSRIKM----------------------------VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDC-KSG 233 (279)
Q Consensus 183 i~i~d~~~~~~~~----------------------------~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~-~~~ 233 (279)
|++|++...+... +-.-|..+|.|+.|- |+++++-|.++.|..|.. +-+
T Consensus 205 lk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~ 282 (385)
T KOG1034|consen 205 LKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLE 282 (385)
T ss_pred EEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhh
Confidence 9999998321100 112367778888876 689999999999999987 333
Q ss_pred ceEEEecCCcc-----ccccCcceeeeE--EEEcCCCCEEEEEcCcceEEeCC
Q 023643 234 KCIKVIDPVKD-----KQLKGVISCVSC--ITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 234 ~~~~~~~~~~~-----~~~~~~~~~v~~--~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+.+..+.+++. ..+.-....|+- .+|+|-++.||.|...|.|.+||
T Consensus 283 e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwd 335 (385)
T KOG1034|consen 283 ESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWD 335 (385)
T ss_pred hhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEE
Confidence 33333322221 111222333444 45667789999999999999997
No 165
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.1e-21 Score=138.63 Aligned_cols=238 Identities=13% Similarity=0.214 Sum_probs=165.2
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCc--------
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNS-------- 72 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-------- 72 (279)
+||.|-|||+.+.. .-+.+.+|..+|++++||+ +|+.|++++.|..|.+||+..+.....+.+...
T Consensus 43 ~nG~vvI~D~~T~~--iar~lsaH~~pi~sl~WS~----dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp 116 (405)
T KOG1273|consen 43 ANGRVVIYDFDTFR--IARMLSAHVRPITSLCWSR----DGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHP 116 (405)
T ss_pred cCCcEEEEEccccc--hhhhhhccccceeEEEecC----CCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeecc
Confidence 58999999999875 3567889999999999999 999999999999999999998765543333222
Q ss_pred -ccceeee------------ccccccccCCc------cCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeee
Q 023643 73 -KVQQLLG------------IEPDGFLHGHD------GPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINL 133 (279)
Q Consensus 73 -~~~~~~~------------~~~~~~~~~h~------~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 133 (279)
+....+. ..+.+.+-... ....+..|.+.|+ ++++|...|.+-+++..+. ++...+
T Consensus 117 ~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~--yIitGtsKGkllv~~a~t~---e~vas~ 191 (405)
T KOG1273|consen 117 RKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK--YIITGTSKGKLLVYDAETL---ECVASF 191 (405)
T ss_pred ccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC--EEEEecCcceEEEEecchh---eeeeee
Confidence 1111110 11111111100 0111234666676 8999998999999987653 222222
Q ss_pred ccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCC-------c--EEEEeec--CCc
Q 023643 134 QGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS-------R--IKMVFKG--HSD 202 (279)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------~--~~~~~~~--~~~ 202 (279)
+-... ..|..+.++..++.|+.-+.|..|+.|+++.- + +.+.++. ...
T Consensus 192 rits~---------------------~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~ 250 (405)
T KOG1273|consen 192 RITSV---------------------QAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL 250 (405)
T ss_pred eechh---------------------eeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh
Confidence 21111 13678899999999999999999999998621 1 1122211 223
Q ss_pred ceEEEEEcCCCcEEEEecC-CCeEEEEeCCCCceEEEecCCccccccCcc-eeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 203 YLHCIVARNSTNQIVTGSE-DGTARIWDCKSGKCIKVIDPVKDKQLKGVI-SCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 203 ~i~~i~~~~~~~~l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.-.+++|+.+|.|+++++. ...++||.-..|.+++.+. |.. .....+.|+|-...+++- ..|.+++|.
T Consensus 251 ~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh--------G~kgE~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 251 QWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH--------GTKGEELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred hhhheeecCCccEEEeccccceeEEEEecCCcceeeeec--------CCchhheeecccccceeeeeec-cCCceEEEE
Confidence 4467899999999988774 4459999999999999994 444 556788999998888887 778999984
No 166
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.88 E-value=2.7e-20 Score=138.46 Aligned_cols=181 Identities=18% Similarity=0.240 Sum_probs=128.5
Q ss_pred ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED 104 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 104 (279)
..+|..+.|.+. ..+.||+|+.|..|++|.++.......- ...+....+..|...|+++.|+|+++
T Consensus 13 ~~pv~s~dfq~n---~~~~laT~G~D~~iriW~v~r~~~~~~~----------~~V~y~s~Ls~H~~aVN~vRf~p~ge- 78 (434)
T KOG1009|consen 13 HEPVYSVDFQKN---SLNKLATAGGDKDIRIWKVNRSEPGGGD----------MKVEYLSSLSRHTRAVNVVRFSPDGE- 78 (434)
T ss_pred CCceEEEEeccC---cccceecccCccceeeeeeeecCCCCCc----------eeEEEeecccCCcceeEEEEEcCCcC-
Confidence 478999999993 4449999999999999999874322110 11345667888999999999999998
Q ss_pred eEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEE
Q 023643 105 ALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAY 184 (279)
Q Consensus 105 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 184 (279)
+|+||+.+|.|.+|.....................+...... .+...|..++|+|++..+++++.|..++
T Consensus 79 -lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr---------~h~~diydL~Ws~d~~~l~s~s~dns~~ 148 (434)
T KOG1009|consen 79 -LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLR---------GHRDDIYDLAWSPDSNFLVSGSVDNSVR 148 (434)
T ss_pred -eeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEec---------ccccchhhhhccCCCceeeeeeccceEE
Confidence 999999999999999753111000000000000111111111 1333588999999999999999999999
Q ss_pred EEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEe
Q 023643 185 CWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWD 229 (279)
Q Consensus 185 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd 229 (279)
+||+..|.....+..|...+..++|.|-++++++-+.|...+.+.
T Consensus 149 l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~ 193 (434)
T KOG1009|consen 149 LWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFS 193 (434)
T ss_pred EEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceee
Confidence 999999998888888888888888877777776666666544444
No 167
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=1.1e-20 Score=136.97 Aligned_cols=207 Identities=14% Similarity=0.164 Sum_probs=152.0
Q ss_pred ccceEEEEECCC---CCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccC--CccC---eEEE
Q 023643 25 TRTVFRTVWGPS---KDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHG--HDGP---AYDV 96 (279)
Q Consensus 25 ~~~v~~~~~~~~---~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~---v~~~ 96 (279)
...|+..+|-+. .+++..++|+.+.+.-|++||.-+++ ....+++ |.+. ..++
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~-------------------lraSy~~ydh~de~taAhsL 164 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGK-------------------LRASYRAYDHQDEYTAAHSL 164 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccc-------------------cccchhhhhhHHhhhhheeE
Confidence 466888888642 22578899999999999999999853 3333332 4433 4689
Q ss_pred EecCCCCceEEEEeeCCCcEEEeecC-CCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCC-eE
Q 023643 97 KFYGGNEDALLLSCGDDGRICGWRWK-EFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG-AI 174 (279)
Q Consensus 97 ~~~~~~~~~~l~s~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l 174 (279)
+|+|+|. +|+.| ....|++||+. .+........+.... +...+-|.+++|+|... .+
T Consensus 165 ~Fs~DGe--qlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k------------------~gq~giisc~a~sP~~~~~~ 223 (406)
T KOG2919|consen 165 QFSPDGE--QLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGK------------------FGQKGIISCFAFSPMDSKTL 223 (406)
T ss_pred EecCCCC--eEeec-ccceEEEeeccCCCCCCcchhhhhccc------------------ccccceeeeeeccCCCCcce
Confidence 9999998 77765 46899999983 322211111111110 01111278999999655 89
Q ss_pred EEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC-CCeEEEEeCCC-CceEEEecCCccccccCcce
Q 023643 175 FSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE-DGTARIWDCKS-GKCIKVIDPVKDKQLKGVIS 252 (279)
Q Consensus 175 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~ 252 (279)
++|+....+-||.-..+.++..+-+|.+.|+.++|.++|+.|.+|+. |-.|-+||+|. +.++..+. .|..
T Consensus 224 a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~--------rhv~ 295 (406)
T KOG2919|consen 224 AVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALE--------RHVG 295 (406)
T ss_pred eeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhh--------hhcc
Confidence 99999999999998889999999999999999999999999999885 77899999986 45566663 3332
Q ss_pred -eeeE--EEEcCCCCEEEEEcCcceEEeCC
Q 023643 253 -CVSC--ITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 253 -~v~~--~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.-.. +...|++++|++|+.||.|++||
T Consensus 296 ~TNQRI~FDld~~~~~LasG~tdG~V~vwd 325 (406)
T KOG2919|consen 296 DTNQRILFDLDPKGEILASGDTDGSVRVWD 325 (406)
T ss_pred CccceEEEecCCCCceeeccCCCccEEEEe
Confidence 2233 44568999999999999999997
No 168
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.87 E-value=1.4e-20 Score=144.81 Aligned_cols=198 Identities=17% Similarity=0.207 Sum_probs=141.1
Q ss_pred CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEe
Q 023643 40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGW 119 (279)
Q Consensus 40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 119 (279)
.+--|++|-..|.|.+.|....+....+. + ...-.+..|+++.|.|.++ ..++.+-.+|.+.++
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~~sklfn------------e---~r~i~ktsvT~ikWvpg~~-~~Fl~a~~sGnlyly 247 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFEVSKLFN------------E---ERLINKSSVTCIKWVPGSD-SLFLVAHASGNLYLY 247 (636)
T ss_pred CCcceEEeeccCceEEecchhhHHHHhhh------------h---cccccccceEEEEEEeCCC-ceEEEEEecCceEEe
Confidence 66778899999999999887522111110 0 0011236799999999876 578888899999999
Q ss_pred ecCCCccCc--ceeeeccCcccceEEeecCCCCCccccC-CCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEE
Q 023643 120 RWKEFTESK--VPINLQGNHVKPVLDLVNHQHKGPWGAL-SPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMV 196 (279)
Q Consensus 120 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 196 (279)
|........ ....+.....-.+...+......|.... -....|+.++|+|||++||+.+.||.++|+|..+.+++..
T Consensus 248 ~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~ 327 (636)
T KOG2394|consen 248 DKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV 327 (636)
T ss_pred eccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH
Confidence 864321110 0001111111111111111111111111 1123689999999999999999999999999999999999
Q ss_pred eecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcC
Q 023643 197 FKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDA 261 (279)
Q Consensus 197 ~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 261 (279)
++..-+...|++|+|||+||++|++|-.|.||.+..++.+..- .+|+.+|+.|+|+|
T Consensus 328 mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG--------qGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 328 MKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG--------QGHKSWVSVVAFDP 384 (636)
T ss_pred HHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec--------cccccceeeEeecc
Confidence 9888899999999999999999999999999999999988887 79999999999984
No 169
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=8.1e-21 Score=138.34 Aligned_cols=208 Identities=17% Similarity=0.245 Sum_probs=149.7
Q ss_pred cceEEEEECCCCC---CCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCC
Q 023643 26 RTVFRTVWGPSKD---GSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGN 102 (279)
Q Consensus 26 ~~v~~~~~~~~~~---~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 102 (279)
.+=.++.+.+... .....+|++.+.|.|++||..+ ++.+..++++...++.+.|....
T Consensus 22 ~~~~~Lk~~~q~~~~~~~e~~vav~lSngsv~lyd~~t-------------------g~~l~~fk~~~~~~N~vrf~~~d 82 (376)
T KOG1188|consen 22 NEDFCLKYDIQEQVKDGFETAVAVSLSNGSVRLYDKGT-------------------GQLLEEFKGPPATTNGVRFISCD 82 (376)
T ss_pred cccceeeccchhhhccCcceeEEEEecCCeEEEEeccc-------------------hhhhheecCCCCcccceEEecCC
Confidence 3445566644211 1125799999999999999998 77888999999999999998753
Q ss_pred CceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC---
Q 023643 103 EDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG--- 179 (279)
Q Consensus 103 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--- 179 (279)
..+.+.+|+.||+|++||+|...... ......+...+ -.|++.+..++.+++|+.
T Consensus 83 s~h~v~s~ssDG~Vr~wD~Rs~~e~a-~~~~~~~~~~~---------------------f~~ld~nck~~ii~~GtE~~~ 140 (376)
T KOG1188|consen 83 SPHGVISCSSDGTVRLWDIRSQAESA-RISWTQQSGTP---------------------FICLDLNCKKNIIACGTELTR 140 (376)
T ss_pred CCCeeEEeccCCeEEEEEeecchhhh-heeccCCCCCc---------------------ceEeeccCcCCeEEecccccc
Confidence 33689999999999999998643222 22222222111 367777777778887753
Q ss_pred -CCeEEEEecCCCcE-EEE-eecCCcceEEEEEcC-CCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeee
Q 023643 180 -DSCAYCWDVESSRI-KMV-FKGHSDYLHCIVARN-STNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVS 255 (279)
Q Consensus 180 -d~~i~i~d~~~~~~-~~~-~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 255 (279)
+-.+.+||.|..+. ++. ...|..-|++++|+| +.++|++||.||.|.|||+.....-..+.. .-.|...|.
T Consensus 141 s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~-----viN~~sSI~ 215 (376)
T KOG1188|consen 141 SDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLH-----VINHGSSIH 215 (376)
T ss_pred CceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHH-----hhcccceee
Confidence 67899999998765 554 457999999999999 579999999999999999875422111110 035667799
Q ss_pred EEEEcCCC-CEEEEEcCcceEEeCC
Q 023643 256 CITLDASE-SWLVRVRATNYVILFS 279 (279)
Q Consensus 256 ~~~~~~~~-~~l~~~~~d~~i~~wd 279 (279)
++.|..++ +.|.+-+-..+..+|+
T Consensus 216 ~igw~~~~ykrI~clTH~Etf~~~e 240 (376)
T KOG1188|consen 216 LIGWLSKKYKRIMCLTHMETFAIYE 240 (376)
T ss_pred eeeeecCCcceEEEEEccCceeEEE
Confidence 99998876 3466666777777764
No 170
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.87 E-value=1.2e-20 Score=134.81 Aligned_cols=225 Identities=18% Similarity=0.228 Sum_probs=159.8
Q ss_pred Cceeeecccc--ccccc---e--eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccc
Q 023643 3 GDSTNWDEDA--YRKSI---L--KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQ 75 (279)
Q Consensus 3 G~v~iw~~~~--~~~~~---~--~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 75 (279)
-.+|+|.+.. .+..+ + ..-..+..++++..|+.. +.+++.+.+-|.+..|||++++..
T Consensus 121 D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~---dp~~igtSSiDTTCTiWdie~~~~------------ 185 (364)
T KOG0290|consen 121 DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEV---DPNLIGTSSIDTTCTIWDIETGVS------------ 185 (364)
T ss_pred CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccC---CcceeEeecccCeEEEEEEeeccc------------
Confidence 3579998653 22111 1 122346689999999985 899999999999999999998411
Q ss_pred eeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcccc
Q 023643 76 QLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGA 155 (279)
Q Consensus 76 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (279)
+.....+-.|..+|..++|...+. ..|+++|.||++|+||++.......+.. ......
T Consensus 186 ----~~vkTQLIAHDKEV~DIaf~~~s~-~~FASvgaDGSvRmFDLR~leHSTIIYE-~p~~~~---------------- 243 (364)
T KOG0290|consen 186 ----GTVKTQLIAHDKEVYDIAFLKGSR-DVFASVGADGSVRMFDLRSLEHSTIIYE-DPSPST---------------- 243 (364)
T ss_pred ----cceeeEEEecCcceeEEEeccCcc-ceEEEecCCCcEEEEEecccccceEEec-CCCCCC----------------
Confidence 222345667999999999998665 6999999999999999986422211111 111111
Q ss_pred CCCCCCceeEEEcCCC-CeEEEecC-CCeEEEEecCCC-cEEEEeecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCC
Q 023643 156 LSPVPENNAIAVDPQG-GAIFSAAG-DSCAYCWDVESS-RIKMVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCK 231 (279)
Q Consensus 156 ~~~~~~i~~~~~~~~~-~~l~~~~~-d~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~ 231 (279)
+...++|+++. +++++-.. ...|.|.|++.. .++..+++|.+.|..++|.|. +..|++++.|..+-+||+.
T Consensus 244 -----pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 244 -----PLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred -----cceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecc
Confidence 24678888744 46776544 467999999974 678899999999999999995 7889999999999999997
Q ss_pred CCceEEEecCCccccccCcceeeeEEEEcC-CCCEEEEEcCc
Q 023643 232 SGKCIKVIDPVKDKQLKGVISCVSCITLDA-SESWLVRVRAT 272 (279)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d 272 (279)
+.-......+... ..-...|..+.|++ .+.+++.+...
T Consensus 319 q~~~~~~~dPila---y~a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 319 QMPRENGEDPILA---YTAGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred cccccCCCCchhh---hhccceeeeeeecccCCCEEEEEecC
Confidence 6432111111111 12345799999996 46788877654
No 171
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=3e-20 Score=146.88 Aligned_cols=215 Identities=14% Similarity=0.099 Sum_probs=160.1
Q ss_pred eeeeecccceEEEEECCCCCCCCCEEEEecCCC-----cEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCe
Q 023643 19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSDG-----SITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPA 93 (279)
Q Consensus 19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 93 (279)
+.+-+|.-+|++++.+| +++++|+++... .|++|+..+ ......+.+|.-.|
T Consensus 519 ~KLYGHGyEv~~l~~s~----~gnliASaCKS~~~ehAvI~lw~t~~-------------------W~~~~~L~~HsLTV 575 (764)
T KOG1063|consen 519 HKLYGHGYEVYALAISP----TGNLIASACKSSLKEHAVIRLWNTAN-------------------WLQVQELEGHSLTV 575 (764)
T ss_pred HHhccCceeEEEEEecC----CCCEEeehhhhCCccceEEEEEeccc-------------------hhhhheecccceEE
Confidence 45668999999999999 999999988654 489999988 56667889999999
Q ss_pred EEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCe
Q 023643 94 YDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGA 173 (279)
Q Consensus 94 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 173 (279)
+.|+|+|+++ +|+++++|.++.+|...+.............|. + -|..+.|+|++.+
T Consensus 576 T~l~FSpdg~--~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~Ht------------R---------IIWdcsW~pde~~ 632 (764)
T KOG1063|consen 576 TRLAFSPDGR--YLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHT------------R---------IIWDCSWSPDEKY 632 (764)
T ss_pred EEEEECCCCc--EEEEeecCceEEeeeeecccchhhhhccccccc------------e---------EEEEcccCcccce
Confidence 9999999999 999999999999999754322222111111111 1 1789999999999
Q ss_pred EEEecCCCeEEEEecCCC--cEEEE--eecCCcceEEEEEcC-C----CcEEEEecCCCeEEEEeCCCCceEEEe---c-
Q 023643 174 IFSAAGDSCAYCWDVESS--RIKMV--FKGHSDYLHCIVARN-S----TNQIVTGSEDGTARIWDCKSGKCIKVI---D- 240 (279)
Q Consensus 174 l~~~~~d~~i~i~d~~~~--~~~~~--~~~~~~~i~~i~~~~-~----~~~l~~~~~d~~i~vwd~~~~~~~~~~---~- 240 (279)
++|++.|.+|++|..... +.+.. ...+..+|+++++.| + +..++.|-..|.|.+|.........+. .
T Consensus 633 FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~ 712 (764)
T KOG1063|consen 633 FATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNL 712 (764)
T ss_pred eEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeee
Confidence 999999999999998876 33333 234778999999987 2 337888999999999986521111000 0
Q ss_pred CCccccccCcceeeeEEEEcCC----------CCEEEEEcCcceEEeCC
Q 023643 241 PVKDKQLKGVISCVSCITLDAS----------ESWLVRVRATNYVILFS 279 (279)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~----------~~~l~~~~~d~~i~~wd 279 (279)
........+|...|+.++|.|. ...|++|+.|..+++++
T Consensus 713 ~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~n 761 (764)
T KOG1063|consen 713 DTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFN 761 (764)
T ss_pred ccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEee
Confidence 0001122577889999999974 23579999999999874
No 172
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=4.7e-20 Score=136.90 Aligned_cols=170 Identities=18% Similarity=0.310 Sum_probs=132.1
Q ss_pred cccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCc
Q 023643 83 DGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPEN 162 (279)
Q Consensus 83 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 162 (279)
.-.+.+|+++|..++|+|.+. +.|||||.|.+|.||++-..... .....++..+..+. ..|
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD-~vIASgSeD~~v~vW~IPe~~l~-------~~ltepvv~L~gH~-----------rrV 134 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFND-CVIASGSEDTKVMVWQIPENGLT-------RDLTEPVVELYGHQ-----------RRV 134 (472)
T ss_pred CCCccCccccccccccCccCC-ceeecCCCCceEEEEECCCcccc-------cCcccceEEEeecc-----------eeE
Confidence 346789999999999999876 59999999999999997543111 11123333332222 247
Q ss_pred eeEEEcCCC-CeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 163 NAIAVDPQG-GAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 163 ~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
--++|+|.. +.|++++.|..|.+||+.+++.+-++. |...|+++.|+.+|.+|++.+.|..|||||.++++.+..-..
T Consensus 135 g~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~ 213 (472)
T KOG0303|consen 135 GLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVA 213 (472)
T ss_pred EEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccc
Confidence 889999964 478899999999999999999998888 999999999999999999999999999999999999988743
Q ss_pred CccccccCcceeeeEEEEcCCCCEEEEEc---CcceEEeCC
Q 023643 242 VKDKQLKGVISCVSCITLDASESWLVRVR---ATNYVILFS 279 (279)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~~wd 279 (279)
|+ ++ .-..+.|-.++..+-||- .+..+-+||
T Consensus 214 he-----G~--k~~Raifl~~g~i~tTGfsr~seRq~aLwd 247 (472)
T KOG0303|consen 214 HE-----GA--KPARAIFLASGKIFTTGFSRMSERQIALWD 247 (472)
T ss_pred cc-----CC--CcceeEEeccCceeeeccccccccceeccC
Confidence 32 22 234556888888555553 477888886
No 173
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=2.6e-19 Score=138.40 Aligned_cols=180 Identities=14% Similarity=0.109 Sum_probs=132.7
Q ss_pred CEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEE-EEeeCCCcEEEee
Q 023643 42 DTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALL-LSCGDDGRICGWR 120 (279)
Q Consensus 42 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iw~ 120 (279)
.++++++.|+.|++||+.+ ++.+..+..+.. +.+++|+|++. .+ ++++.++.|++||
T Consensus 2 ~~~~s~~~d~~v~~~d~~t-------------------~~~~~~~~~~~~-~~~l~~~~dg~--~l~~~~~~~~~v~~~d 59 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTAT-------------------LEVTRTFPVGQR-PRGITLSKDGK--LLYVCASDSDTIQVID 59 (300)
T ss_pred cEEEEecCCCEEEEEECCC-------------------CceEEEEECCCC-CCceEECCCCC--EEEEEECCCCeEEEEE
Confidence 5788999999999999987 445555655543 67899999987 55 6778899999999
Q ss_pred cCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe-cCCCeEEEEecCCCcEEEEeec
Q 023643 121 WKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA-AGDSCAYCWDVESSRIKMVFKG 199 (279)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~ 199 (279)
+.+.. ....+.... .+..++|+|+++.++++ ..++.|++||+++.+.+..+..
T Consensus 60 ~~~~~---~~~~~~~~~-----------------------~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~ 113 (300)
T TIGR03866 60 LATGE---VIGTLPSGP-----------------------DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV 113 (300)
T ss_pred CCCCc---EEEeccCCC-----------------------CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC
Confidence 76431 111111110 13577899999977655 5689999999999888877763
Q ss_pred CCcceEEEEEcCCCcEEEEecCCC-eEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEE-cCcceEEe
Q 023643 200 HSDYLHCIVARNSTNQIVTGSEDG-TARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV-RATNYVIL 277 (279)
Q Consensus 200 ~~~~i~~i~~~~~~~~l~~~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~ 277 (279)
...+.+++|+|+++++++++.++ .+.+||.++++....+.. ......++|+|++++|+++ ..++.|++
T Consensus 114 -~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~---------~~~~~~~~~s~dg~~l~~~~~~~~~v~i 183 (300)
T TIGR03866 114 -GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV---------DQRPRFAEFTADGKELWVSSEIGGTVSV 183 (300)
T ss_pred -CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc---------CCCccEEEECCCCCEEEEEcCCCCEEEE
Confidence 33468899999999999888765 467889988877655421 1234678999999988654 46899999
Q ss_pred CC
Q 023643 278 FS 279 (279)
Q Consensus 278 wd 279 (279)
||
T Consensus 184 ~d 185 (300)
T TIGR03866 184 ID 185 (300)
T ss_pred EE
Confidence 96
No 174
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.1e-20 Score=135.34 Aligned_cols=242 Identities=16% Similarity=0.161 Sum_probs=162.0
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcc--------
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSK-------- 73 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-------- 73 (279)
.|.|++||..+. ..+..+++++..+..++|..+. .+..+.+++.||+|++||++.......+.+....
T Consensus 49 ngsv~lyd~~tg--~~l~~fk~~~~~~N~vrf~~~d--s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld 124 (376)
T KOG1188|consen 49 NGSVRLYDKGTG--QLLEEFKGPPATTNGVRFISCD--SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLD 124 (376)
T ss_pred CCeEEEEeccch--hhhheecCCCCcccceEEecCC--CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEee
Confidence 589999998886 4588899999999999997631 4678999999999999999876544322221111
Q ss_pred ---cce----------------eee----ccccccc-cCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcc
Q 023643 74 ---VQQ----------------LLG----IEPDGFL-HGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKV 129 (279)
Q Consensus 74 ---~~~----------------~~~----~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 129 (279)
... ++. .+++..+ ..|.+.|++++|+|+.+ ++|+|||.||.|.+||++.......
T Consensus 125 ~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p-nlLlSGSvDGLvnlfD~~~d~EeDa 203 (376)
T KOG1188|consen 125 LNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP-NLLLSGSVDGLVNLFDTKKDNEEDA 203 (376)
T ss_pred ccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC-CeEEeecccceEEeeecCCCcchhh
Confidence 011 111 2223333 45999999999999887 6999999999999999875422211
Q ss_pred eeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC-CeEEEecCCCeEEEEecCCCcEEEEeecCC-------
Q 023643 130 PINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG-GAIFSAAGDSCAYCWDVESSRIKMVFKGHS------- 201 (279)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------- 201 (279)
....... ...|.++.|..++ +.+++-+..+...+|++..+.+...+....
T Consensus 204 L~~viN~----------------------~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r 261 (376)
T KOG1188|consen 204 LLHVINH----------------------GSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLR 261 (376)
T ss_pred HHHhhcc----------------------cceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHH
Confidence 1111111 1137889998765 468888999999999999887555443210
Q ss_pred -----cceEEEEEcC-CCcEEEEecC-CCeEEEEeCC---CC---ceEEEecCCccccccCcceeeeEEEEcCCCCEEEE
Q 023643 202 -----DYLHCIVARN-STNQIVTGSE-DGTARIWDCK---SG---KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVR 268 (279)
Q Consensus 202 -----~~i~~i~~~~-~~~~l~~~~~-d~~i~vwd~~---~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 268 (279)
..+-.. .+| ++...+.++. -+...++-+. ++ +.+..+. .+|...|.++.|...+..+.|
T Consensus 262 ~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~-------g~~~eiVR~i~~~~~~~~l~T 333 (376)
T KOG1188|consen 262 KEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQ-------GGHEEIVRDILFDVKNDVLYT 333 (376)
T ss_pred hhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeecccccccCcccccc-------CCcHHHHHHHhhhcccceeec
Confidence 111111 223 3444444433 5666665443 22 2233332 357888999999999999999
Q ss_pred EcCcceEEeC
Q 023643 269 VRATNYVILF 278 (279)
Q Consensus 269 ~~~d~~i~~w 278 (279)
|++||.+.+|
T Consensus 334 GGEDG~l~~W 343 (376)
T KOG1188|consen 334 GGEDGLLQAW 343 (376)
T ss_pred cCCCceEEEE
Confidence 9999999999
No 175
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.85 E-value=9.9e-20 Score=131.70 Aligned_cols=209 Identities=15% Similarity=0.160 Sum_probs=158.3
Q ss_pred cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643 24 LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE 103 (279)
Q Consensus 24 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 103 (279)
-.++|+|.+|++ |...+|++..+..|.||....... .++.++++.|...|++++|.|..+
T Consensus 9 ~~~pitchAwn~----drt~iAv~~~~~evhiy~~~~~~~----------------w~~~htls~Hd~~vtgvdWap~sn 68 (361)
T KOG1523|consen 9 LLEPITCHAWNS----DRTQIAVSPNNHEVHIYSMLGADL----------------WEPAHTLSEHDKIVTGVDWAPKSN 68 (361)
T ss_pred ccCceeeeeecC----CCceEEeccCCceEEEEEecCCCC----------------ceeceehhhhCcceeEEeecCCCC
Confidence 458999999999 999999999999999999876321 467789999999999999999998
Q ss_pred ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeE
Q 023643 104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCA 183 (279)
Q Consensus 104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 183 (279)
.|++|+.|..-++|.......-+....+... +.+.+++.|+|.++.|++|+.-..|
T Consensus 69 --rIvtcs~drnayVw~~~~~~~WkptlvLlRi----------------------NrAAt~V~WsP~enkFAVgSgar~i 124 (361)
T KOG1523|consen 69 --RIVTCSHDRNAYVWTQPSGGTWKPTLVLLRI----------------------NRAATCVKWSPKENKFAVGSGARLI 124 (361)
T ss_pred --ceeEccCCCCccccccCCCCeeccceeEEEe----------------------ccceeeEeecCcCceEEeccCccEE
Confidence 9999999999999997433222222222211 1136899999999999999999999
Q ss_pred EEEecCCCcE----EEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCc-----------ccccc
Q 023643 184 YCWDVESSRI----KMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVK-----------DKQLK 248 (279)
Q Consensus 184 ~i~d~~~~~~----~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-----------~~~~~ 248 (279)
.+|-.+...- .+.-+.+.+.|.+++|+|++-+|++|+.|+..+||...-. .+..-+... ..++.
T Consensus 125 sVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK-~Vdekpap~pWgsk~PFG~lm~E~~ 203 (361)
T KOG1523|consen 125 SVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIK-GVDEKPAPTPWGSKMPFGQLMSEAS 203 (361)
T ss_pred EEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeee-ccccCCCCCCCccCCcHHHHHHhhc
Confidence 9998765422 2233456788999999999999999999999999964210 000000000 01113
Q ss_pred CcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643 249 GVISCVSCITLDASESWLVRVRATNYVIL 277 (279)
Q Consensus 249 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 277 (279)
...+++..+.|+|+|..|+-.+.|..+.+
T Consensus 204 ~~ggwvh~v~fs~sG~~lawv~Hds~v~~ 232 (361)
T KOG1523|consen 204 SSGGWVHGVLFSPSGNRLAWVGHDSTVSF 232 (361)
T ss_pred cCCCceeeeEeCCCCCEeeEecCCCceEE
Confidence 45578999999999999999988888765
No 176
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=3.7e-19 Score=140.79 Aligned_cols=234 Identities=13% Similarity=0.103 Sum_probs=167.3
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
+..+.+||++.+ ..++++++|.+.|++++|+. +|.++|+|+.|..|.+|+..-... +.++....-+.....
T Consensus 32 g~rlliyD~ndG--~llqtLKgHKDtVycVAys~----dGkrFASG~aDK~VI~W~~klEG~---LkYSH~D~IQCMsFN 102 (1081)
T KOG1538|consen 32 GSRLLVYDTSDG--TLLQPLKGHKDTVYCVAYAK----DGKRFASGSADKSVIIWTSKLEGI---LKYSHNDAIQCMSFN 102 (1081)
T ss_pred CCEEEEEeCCCc--ccccccccccceEEEEEEcc----CCceeccCCCceeEEEecccccce---eeeccCCeeeEeecC
Confidence 456788998877 45889999999999999999 999999999999999999764211 111111111100000
Q ss_pred c-------------------cccccC--CccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccc
Q 023643 82 P-------------------DGFLHG--HDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKP 140 (279)
Q Consensus 82 ~-------------------~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 140 (279)
| ...... ....+.+.+|..+|+ +|+.|-.+|+|.+-+-. .+.+....-.+....
T Consensus 103 P~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGq--ylalG~~nGTIsiRNk~--gEek~~I~Rpgg~Ns- 177 (1081)
T KOG1538|consen 103 PITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQ--YLALGMFNGTISIRNKN--GEEKVKIERPGGSNS- 177 (1081)
T ss_pred chHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCc--EEEEeccCceEEeecCC--CCcceEEeCCCCCCC-
Confidence 0 011111 234678889999988 99999999999987532 112222222222222
Q ss_pred eEEeecCCCCCccccCCCCCCceeEEEcCCC-----CeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcE
Q 023643 141 VLDLVNHQHKGPWGALSPVPENNAIAVDPQG-----GAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ 215 (279)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 215 (279)
.|.+++|+|.. ..+++.....++.+|.+. |+.+..-+.-.-...|+.+.++|.+
T Consensus 178 --------------------piwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy 236 (1081)
T KOG1538|consen 178 --------------------PIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEY 236 (1081)
T ss_pred --------------------CceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcE
Confidence 36889999853 368888888889998875 5555533333334578999999999
Q ss_pred EEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 216 IVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 216 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
++.|+.|+.+++|- +.|-.+.++ .....+|+.++..|++++++.|+.||+|..|+
T Consensus 237 ~LiGGsdk~L~~fT-R~GvrLGTv--------g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 237 ILLGGSDKQLSLFT-RDGVRLGTV--------GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred EEEccCCCceEEEe-ecCeEEeec--------cccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 99999999999996 678777777 45678999999999999999999999997653
No 177
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.85 E-value=1.2e-19 Score=129.64 Aligned_cols=214 Identities=15% Similarity=0.134 Sum_probs=151.6
Q ss_pred ecccceEEEEECCCCC-CCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCC
Q 023643 23 ILTRTVFRTVWGPSKD-GSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGG 101 (279)
Q Consensus 23 ~~~~~v~~~~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 101 (279)
.|.-+++.+-|.|+.. ...++||+.+. .+|+|.+...+....... .-....-..+..++++..|+.-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~----------~L~~~kns~~~aPlTSFDWne~ 161 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQS----------VLNNNKNSEFCAPLTSFDWNEV 161 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhh----------hhccCcccccCCcccccccccC
Confidence 5788999999999532 22356776543 799999985322211000 0000112236679999999986
Q ss_pred CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCC-eEEEecCC
Q 023643 102 NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG-AIFSAAGD 180 (279)
Q Consensus 102 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d 180 (279)
.. +++.++|-|-+..|||++..........+ ..|.++|..++|...+. .+++.+.|
T Consensus 162 dp-~~igtSSiDTTCTiWdie~~~~~~vkTQL----------------------IAHDKEV~DIaf~~~s~~~FASvgaD 218 (364)
T KOG0290|consen 162 DP-NLIGTSSIDTTCTIWDIETGVSGTVKTQL----------------------IAHDKEVYDIAFLKGSRDVFASVGAD 218 (364)
T ss_pred Cc-ceeEeecccCeEEEEEEeeccccceeeEE----------------------EecCcceeEEEeccCccceEEEecCC
Confidence 66 59999999999999999764121111111 23334588999998554 78999999
Q ss_pred CeEEEEecCCCcEEEEe---ecCCcceEEEEEcC-CCcEEEEecCCC-eEEEEeCCC-CceEEEecCCccccccCcceee
Q 023643 181 SCAYCWDVESSRIKMVF---KGHSDYLHCIVARN-STNQIVTGSEDG-TARIWDCKS-GKCIKVIDPVKDKQLKGVISCV 254 (279)
Q Consensus 181 ~~i~i~d~~~~~~~~~~---~~~~~~i~~i~~~~-~~~~l~~~~~d~-~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v 254 (279)
|.+++||++..+--..+ .....+...++|++ +.+++++-..|. .|.|.|+|. ..++..+ .+|.+.|
T Consensus 219 GSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L--------~~H~a~V 290 (364)
T KOG0290|consen 219 GSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL--------RNHQASV 290 (364)
T ss_pred CcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh--------hcCcccc
Confidence 99999999976543332 22246788899988 577888766554 599999987 4566666 7999999
Q ss_pred eEEEEcCC-CCEEEEEcCcceEEeCC
Q 023643 255 SCITLDAS-ESWLVRVRATNYVILFS 279 (279)
Q Consensus 255 ~~~~~~~~-~~~l~~~~~d~~i~~wd 279 (279)
++++|.|. ...|.|++.|..+.+||
T Consensus 291 NgIaWaPhS~~hictaGDD~qaliWD 316 (364)
T KOG0290|consen 291 NGIAWAPHSSSHICTAGDDCQALIWD 316 (364)
T ss_pred cceEecCCCCceeeecCCcceEEEEe
Confidence 99999995 57899999999999997
No 178
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.84 E-value=3.9e-18 Score=125.75 Aligned_cols=194 Identities=12% Similarity=0.124 Sum_probs=141.9
Q ss_pred cceEEEEECCCCCCCCCEEEEecCCC--cEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643 26 RTVFRTVWGPSKDGSPDTIVIASSDG--SITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE 103 (279)
Q Consensus 26 ~~v~~~~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 103 (279)
..|..+-|+. .++|..+.+. .+++.++... ..+..+. -..+|.++.++.+
T Consensus 47 ~~IvEmLFSS------SLvaiV~~~qpr~Lkv~~~Kk~-------------------~~ICe~~-fpt~IL~VrmNr~-- 98 (391)
T KOG2110|consen 47 VSIVEMLFSS------SLVAIVSIKQPRKLKVVHFKKK-------------------TTICEIF-FPTSILAVRMNRK-- 98 (391)
T ss_pred eEEEEeeccc------ceeEEEecCCCceEEEEEcccC-------------------ceEEEEe-cCCceEEEEEccc--
Confidence 3456666765 5666665443 4788888762 2233332 3456899998765
Q ss_pred ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe--cCCC
Q 023643 104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA--AGDS 181 (279)
Q Consensus 104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~d~ 181 (279)
.|+++=.+ .|+|||+++.+....+.....+.. .+.++++++.+.+++-- ...|
T Consensus 99 --RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~----------------------gl~AlS~n~~n~ylAyp~s~t~G 153 (391)
T KOG2110|consen 99 --RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPK----------------------GLCALSPNNANCYLAYPGSTTSG 153 (391)
T ss_pred --eEEEEEcc-cEEEEecccceeehhhhccCCCcc----------------------ceEeeccCCCCceEEecCCCCCc
Confidence 56666554 499999986533333222212111 13455555555577653 3368
Q ss_pred eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCe-EEEEeCCCCceEEEecCCccccccCcceeeeEEEEc
Q 023643 182 CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT-ARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLD 260 (279)
Q Consensus 182 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 260 (279)
.|.+||+.+-+++..+..|.+.+-+++|+++|.+||++|..|+ ||||.+.+|+.+..++.- .....|.+++|+
T Consensus 154 dV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG------~~~~~IySL~Fs 227 (391)
T KOG2110|consen 154 DVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRG------TYPVSIYSLSFS 227 (391)
T ss_pred eEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCC------ceeeEEEEEEEC
Confidence 9999999999999999999999999999999999999999998 799999999999999631 124678999999
Q ss_pred CCCCEEEEEcCcceEEeC
Q 023643 261 ASESWLVRVRATNYVILF 278 (279)
Q Consensus 261 ~~~~~l~~~~~d~~i~~w 278 (279)
|++.+|++.|..++|++|
T Consensus 228 ~ds~~L~~sS~TeTVHiF 245 (391)
T KOG2110|consen 228 PDSQFLAASSNTETVHIF 245 (391)
T ss_pred CCCCeEEEecCCCeEEEE
Confidence 999999999999999987
No 179
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.84 E-value=7.7e-21 Score=153.28 Aligned_cols=238 Identities=18% Similarity=0.193 Sum_probs=169.4
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
|.-|+||..++. .++....+|.+.|+.++.+. +..++|+++.|..|++|.+.+ +.
T Consensus 211 d~lvKiwS~et~--~~lAs~rGhs~ditdlavs~----~n~~iaaaS~D~vIrvWrl~~-------------------~~ 265 (1113)
T KOG0644|consen 211 DRLVKIWSMETA--RCLASCRGHSGDITDLAVSS----NNTMIAAASNDKVIRVWRLPD-------------------GA 265 (1113)
T ss_pred cceeeeeeccch--hhhccCCCCccccchhccch----hhhhhhhcccCceEEEEecCC-------------------Cc
Confidence 557899998877 55889999999999999998 888999999999999999998 78
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEe--ecCCC---CCccccC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDL--VNHQH---KGPWGAL 156 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~ 156 (279)
++..+++|++.|++++|+|- .+.+.||++++||.+-.................+-.+ .+... .+.-+..
T Consensus 266 pvsvLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~e 339 (1113)
T KOG0644|consen 266 PVSVLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGE 339 (1113)
T ss_pred hHHHHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcc
Confidence 99999999999999999985 3778899999999872111111111111111100000 00000 0000001
Q ss_pred CCCCCceeEEEcCCCC-----------eEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcC-CCcEEEEecCCCe
Q 023643 157 SPVPENNAIAVDPQGG-----------AIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARN-STNQIVTGSEDGT 224 (279)
Q Consensus 157 ~~~~~i~~~~~~~~~~-----------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~ 224 (279)
+......+++|....- +.+++-.+-.+++|++.++...+.+.+|...+..+.++| +.....+++.||.
T Consensus 340 a~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgs 419 (1113)
T KOG0644|consen 340 ARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGS 419 (1113)
T ss_pred cccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCc
Confidence 1111223333333322 334444567789999999999999999999999999999 5667788999999
Q ss_pred EEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 225 ARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 225 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
..|||+-.|.+++.+. .+| ..+..-+|+++|..++....-|.+.+.
T Consensus 420 t~iwdi~eg~pik~y~-------~gh-~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 420 TIIWDIWEGIPIKHYF-------IGH-GKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred eEeeecccCCcceeee-------ccc-ceeeccccCCCCceEecCCCCCceEEe
Confidence 9999999998888774 344 445567899999888887777776654
No 180
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=8e-18 Score=136.10 Aligned_cols=220 Identities=25% Similarity=0.411 Sum_probs=167.6
Q ss_pred CCceeeecccc-ccccceeeeeecccceEEEEECCCCCCCCCEEEEecC-CCcEEEEeCCCCCcccccccCCcccceeee
Q 023643 2 CGDSTNWDEDA-YRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASS-DGSITSYSIPSCISKLPLGLSNSKVQQLLG 79 (279)
Q Consensus 2 dG~v~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 79 (279)
|+.+++|+... . .....+..|...|..++|+| ++..+++++. |+.+++|++..
T Consensus 133 d~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~------------------- 187 (466)
T COG2319 133 DGTVKLWDLSTPG--KLIRTLEGHSESVTSLAFSP----DGKLLASGSSLDGTIKLWDLRT------------------- 187 (466)
T ss_pred CccEEEEEecCCC--eEEEEEecCcccEEEEEECC----CCCEEEecCCCCCceEEEEcCC-------------------
Confidence 78899999876 3 34667788999999999999 7888888885 99999999997
Q ss_pred ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCccee-eeccCcccceEEeecCCCCCccccCCC
Q 023643 80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPI-NLQGNHVKPVLDLVNHQHKGPWGALSP 158 (279)
Q Consensus 80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (279)
...+..+.+|...|.+++|+|++. ..+++++.|+.|++||.+. ..... ...++..
T Consensus 188 ~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~d~~i~~wd~~~---~~~~~~~~~~~~~-------------------- 243 (466)
T COG2319 188 GKPLSTLAGHTDPVSSLAFSPDGG-LLIASGSSDGTIRLWDLST---GKLLRSTLSGHSD-------------------- 243 (466)
T ss_pred CceEEeeccCCCceEEEEEcCCcc-eEEEEecCCCcEEEEECCC---CcEEeeecCCCCc--------------------
Confidence 455667777999999999998886 2455559999999997652 12222 1222111
Q ss_pred CCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcE-EEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEE
Q 023643 159 VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRI-KMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIK 237 (279)
Q Consensus 159 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~ 237 (279)
.. ...|+|++..+++++.|+.+++||++.... ...+..|...+.++.|.|++..+++++.|+.+.+||..+.....
T Consensus 244 --~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 320 (466)
T COG2319 244 --SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS 320 (466)
T ss_pred --ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE
Confidence 11 117899988888999999999999987654 44456788999999999988888889999999999998887766
Q ss_pred EecCCccccccCcceeeeEEEEcCCCCEEEEE-cCcceEEeCC
Q 023643 238 VIDPVKDKQLKGVISCVSCITLDASESWLVRV-RATNYVILFS 279 (279)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~wd 279 (279)
... ...|...+..+.|.+++..++.+ ..|+.+.+|+
T Consensus 321 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 321 SLT------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred Eee------ecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 663 03566678899994333555555 6788888774
No 181
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.84 E-value=6.4e-20 Score=144.26 Aligned_cols=227 Identities=15% Similarity=0.166 Sum_probs=155.3
Q ss_pred Cceeeeccccccc---cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643 3 GDSTNWDEDAYRK---SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG 79 (279)
Q Consensus 3 G~v~iw~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 79 (279)
|.|-||+++..-. ..+..+ .....|+.+.|.| .|...||+++.||.|++|.+.........
T Consensus 603 G~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdP---FD~~rLAVa~ddg~i~lWr~~a~gl~e~~------------ 666 (1012)
T KOG1445|consen 603 GVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDP---FDDERLAVATDDGQINLWRLTANGLPENE------------ 666 (1012)
T ss_pred ceEEEEEcCCCCCCCccccccc-ccCceeeecccCC---CChHHeeecccCceEEEEEeccCCCCccc------------
Confidence 6778888654321 111122 2356799999999 58999999999999999999865322211
Q ss_pred ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643 80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV 159 (279)
Q Consensus 80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (279)
..+...+..|...|+++.|+|-.. +.|++++.|.+|++||+.+. .....+.+|.
T Consensus 667 ~tPe~~lt~h~eKI~slRfHPLAa-dvLa~asyd~Ti~lWDl~~~---~~~~~l~gHt---------------------- 720 (1012)
T KOG1445|consen 667 MTPEKILTIHGEKITSLRFHPLAA-DVLAVASYDSTIELWDLANA---KLYSRLVGHT---------------------- 720 (1012)
T ss_pred CCcceeeecccceEEEEEecchhh-hHhhhhhccceeeeeehhhh---hhhheeccCc----------------------
Confidence 466678889999999999999754 48999999999999998754 2333333332
Q ss_pred CCceeEEEcCCCCeEEEecCCCeEEEEecCCCc-EEEEeecCC-cceEEEEEcCCCcEEEEecCCC----eEEEEeCCCC
Q 023643 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSR-IKMVFKGHS-DYLHCIVARNSTNQIVTGSEDG----TARIWDCKSG 233 (279)
Q Consensus 160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d~----~i~vwd~~~~ 233 (279)
..|..++|+|+|+.+++.+.||+|++|..++++ ++++-++.- ..--.|.|.-+|++++..+.|. .|.+||..+-
T Consensus 721 dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 721 DQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred CceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhc
Confidence 248899999999999999999999999998764 444433321 1223456777899988777654 4888887652
Q ss_pred --ceEEEecCCccccccCcceeeeEEEEcCCC-CEEEEEcCcceEEeC
Q 023643 234 --KCIKVIDPVKDKQLKGVISCVSCITLDASE-SWLVRVRATNYVILF 278 (279)
Q Consensus 234 --~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~w 278 (279)
..+.+... .-...+.--.+++|. -++++|-.|..|.+|
T Consensus 801 ~~~pl~t~~l-------Dvaps~LvP~YD~Ds~~lfltGKGD~~v~~y 841 (1012)
T KOG1445|consen 801 DLRPLYTQVL-------DVAPSPLVPHYDYDSNVLFLTGKGDRFVNMY 841 (1012)
T ss_pred cCCcceeeee-------cccCccccccccCCCceEEEecCCCceEEEE
Confidence 33333211 000011112345554 456788888888876
No 182
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=2.5e-19 Score=129.97 Aligned_cols=216 Identities=16% Similarity=0.171 Sum_probs=151.4
Q ss_pred CCceeeeccccccccceeeeeecccc---eEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRT---VFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL 78 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 78 (279)
|.-|++||.-+++.......-.|.++ -.+++|+| ||..|++|.. ..|+++|+......
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~----DGeqlfaGyk-rcirvFdt~RpGr~-------------- 192 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP----DGEQLFAGYK-RCIRVFDTSRPGRD-------------- 192 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecC----CCCeEeeccc-ceEEEeeccCCCCC--------------
Confidence 34588999766543332222234433 45789999 9999988755 68999999542111
Q ss_pred eccccccc-----cCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcc
Q 023643 79 GIEPDGFL-----HGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPW 153 (279)
Q Consensus 79 ~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (279)
.+.... .+..+-+.+++|+|... ..++.++...++-|+.-... .....+.+ +
T Consensus 193 --c~vy~t~~~~k~gq~giisc~a~sP~~~-~~~a~gsY~q~~giy~~~~~---~pl~llgg-h---------------- 249 (406)
T KOG2919|consen 193 --CPVYTTVTKGKFGQKGIISCFAFSPMDS-KTLAVGSYGQRVGIYNDDGR---RPLQLLGG-H---------------- 249 (406)
T ss_pred --CcchhhhhcccccccceeeeeeccCCCC-cceeeecccceeeeEecCCC---Cceeeecc-c----------------
Confidence 111111 22367789999999765 48899998888888874321 11122222 1
Q ss_pred ccCCCCCCceeEEEcCCCCeEEEecC-CCeEEEEecCC-CcEEEEeecCCc-ceEEE--EEcCCCcEEEEecCCCeEEEE
Q 023643 154 GALSPVPENNAIAVDPQGGAIFSAAG-DSCAYCWDVES-SRIKMVFKGHSD-YLHCI--VARNSTNQIVTGSEDGTARIW 228 (279)
Q Consensus 154 ~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~-~~~~~~~~~~~~-~i~~i--~~~~~~~~l~~~~~d~~i~vw 228 (279)
.+.|+.+.|.++|+.|++|.. |..|..||++. ..++..+..|.+ .=..| ...|++++|++|+.||.|++|
T Consensus 250 -----~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vw 324 (406)
T KOG2919|consen 250 -----GGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVW 324 (406)
T ss_pred -----CCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEE
Confidence 124899999999999999875 67899999986 456777776654 22334 445789999999999999999
Q ss_pred eCCC-CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643 229 DCKS-GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT 272 (279)
Q Consensus 229 d~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 272 (279)
|++. +.....+ ..+...++.++++|--.++||++..
T Consensus 325 dlk~~gn~~sv~--------~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 325 DLKDLGNEVSVT--------GNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ecCCCCCccccc--------ccccccccceecCcccceeeeccCc
Confidence 9998 6766666 5677889999999998888887654
No 183
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=1.3e-17 Score=134.91 Aligned_cols=220 Identities=25% Similarity=0.410 Sum_probs=167.5
Q ss_pred CCCceeeeccccccccceeeeeecc-cceEEEEE-CCCCCCCCC-EEEEecC-CCcEEEEeCCCCCcccccccCCcccce
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILT-RTVFRTVW-GPSKDGSPD-TIVIASS-DGSITSYSIPSCISKLPLGLSNSKVQQ 76 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~~~~~~~-~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~ 76 (279)
.|+.+.+|+..... ..+..+..+. ..+..+.+ .+ ++. .++..+. |+.+.+|+....
T Consensus 85 ~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~~~~~~~~~~~--------------- 144 (466)
T COG2319 85 SDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSP----DGNSILLASSSLDGTVKLWDLSTP--------------- 144 (466)
T ss_pred CCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECC----CcceEEeccCCCCccEEEEEecCC---------------
Confidence 47899999987764 1344454433 36777777 77 666 5555444 999999999861
Q ss_pred eeeccccccccCCccCeEEEEecCCCCceEEEEeeC-CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcccc
Q 023643 77 LLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGD-DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGA 155 (279)
Q Consensus 77 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (279)
......+..|...|..++|+|++. .+++++. |+.+++|++.. ......+.+
T Consensus 145 ---~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-------------------- 196 (466)
T COG2319 145 ---GKLIRTLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRT---GKPLSTLAG-------------------- 196 (466)
T ss_pred ---CeEEEEEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCC---CceEEeecc--------------------
Confidence 344567778999999999999998 8888885 99999999864 112222222
Q ss_pred CCCCCCceeEEEcCCCC-eEEEecCCCeEEEEecCCCcEEE-EeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC
Q 023643 156 LSPVPENNAIAVDPQGG-AIFSAAGDSCAYCWDVESSRIKM-VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG 233 (279)
Q Consensus 156 ~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~ 233 (279)
+...+.+++|+|++. .+++++.|+.|++||...+.... .+..|.... -..|+|++.++++++.|+.+++|+++..
T Consensus 197 --~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 273 (466)
T COG2319 197 --HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSS 273 (466)
T ss_pred --CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCC
Confidence 112378999999988 55555899999999998888887 688888775 4489999989999999999999999876
Q ss_pred ce-EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 234 KC-IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 234 ~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.. ...+ ..|...+.++.|.|++..+++++.|+.+.+||
T Consensus 274 ~~~~~~~--------~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~ 312 (466)
T COG2319 274 SSLLRTL--------SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWD 312 (466)
T ss_pred CcEEEEE--------ecCCccEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence 65 4443 36678999999999888888898898888884
No 184
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.83 E-value=1.3e-18 Score=140.15 Aligned_cols=210 Identities=12% Similarity=0.107 Sum_probs=138.3
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCC---CcEEEEeCCCCCcccccccCCcccceee
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSD---GSITSYSIPSCISKLPLGLSNSKVQQLL 78 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~ 78 (279)
+..|.+||.++.. .+.+..|...+..++|+| +++.|+..+.+ ..|++||+.++.
T Consensus 183 ~~~i~i~d~dg~~---~~~lt~~~~~v~~p~wSP----DG~~la~~s~~~~~~~i~i~dl~tg~---------------- 239 (429)
T PRK01742 183 PYEVRVADYDGFN---QFIVNRSSQPLMSPAWSP----DGSKLAYVSFENKKSQLVVHDLRSGA---------------- 239 (429)
T ss_pred eEEEEEECCCCCC---ceEeccCCCccccceEcC----CCCEEEEEEecCCCcEEEEEeCCCCc----------------
Confidence 3578999988754 334555778899999999 89999887643 369999998742
Q ss_pred eccccccccCCccCeEEEEecCCCCceEEEEe-eCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643 79 GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSC-GDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS 157 (279)
Q Consensus 79 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (279)
.+.+..+.+|. ..++|+|+++ .|+.+ +.+|.+.||.++.... ....+..+.
T Consensus 240 -~~~l~~~~g~~---~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~--~~~~lt~~~-------------------- 291 (429)
T PRK01742 240 -RKVVASFRGHN---GAPAFSPDGS--RLAFASSKDGVLNIYVMGANGG--TPSQLTSGA-------------------- 291 (429)
T ss_pred -eEEEecCCCcc---CceeECCCCC--EEEEEEecCCcEEEEEEECCCC--CeEeeccCC--------------------
Confidence 12233344443 3689999998 77665 4688877775432111 111111110
Q ss_pred CCCCceeEEEcCCCCeEEEec-CCCeEEEEecCCC-cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce
Q 023643 158 PVPENNAIAVDPQGGAIFSAA-GDSCAYCWDVESS-RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC 235 (279)
Q Consensus 158 ~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~ 235 (279)
..+....|+|+++.|+.++ .++...+|++... .....+ .+.. ....|+|+|++|+..+.++ +.+||+.+++.
T Consensus 292 --~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~ 365 (429)
T PRK01742 292 --GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGST 365 (429)
T ss_pred --CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCe
Confidence 0246789999999776554 5677788876432 222223 3333 4578999999998887766 55599988876
Q ss_pred EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 236 IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
..... .+ ....+.|+|+|++|+.++.++...+|
T Consensus 366 ~~lt~--------~~--~~~~~~~sPdG~~i~~~s~~g~~~~l 398 (429)
T PRK01742 366 EVLSS--------TF--LDESPSISPNGIMIIYSSTQGLGKVL 398 (429)
T ss_pred EEecC--------CC--CCCCceECCCCCEEEEEEcCCCceEE
Confidence 53321 11 12457899999999999888877765
No 185
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.82 E-value=6.6e-19 Score=135.73 Aligned_cols=201 Identities=18% Similarity=0.237 Sum_probs=141.0
Q ss_pred Cceeeecccccccccee--eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee--
Q 023643 3 GDSTNWDEDAYRKSILK--EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL-- 78 (279)
Q Consensus 3 G~v~iw~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-- 78 (279)
|.|.+.|+.......+. ........|+++.|-|- +..+++++-.+|.+.+||..-........+........+
T Consensus 195 Gqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg---~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i 271 (636)
T KOG2394|consen 195 GQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPG---SDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAI 271 (636)
T ss_pred CceEEecchhhHHHHhhhhcccccccceEEEEEEeC---CCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEE
Confidence 55666664443221111 12223578999999994 777888888999999998743222211111111111100
Q ss_pred -------eccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCC
Q 023643 79 -------GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKG 151 (279)
Q Consensus 79 -------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (279)
...++..+.--++.|+..+|+|+++ +||+.+.||.+||||..+.........+.+
T Consensus 272 ~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~--~LA~VSqDGfLRvF~fdt~eLlg~mkSYFG---------------- 333 (636)
T KOG2394|consen 272 LTSKSKKTRNPVARWHIGEGSINEFAFSPDGK--YLATVSQDGFLRIFDFDTQELLGVMKSYFG---------------- 333 (636)
T ss_pred eeeeccccCCccceeEeccccccceeEcCCCc--eEEEEecCceEEEeeccHHHHHHHHHhhcc----------------
Confidence 0244444444566899999999998 999999999999999865322222222222
Q ss_pred ccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCC-------------------
Q 023643 152 PWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNS------------------- 212 (279)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~------------------- 212 (279)
...|++|+|||+++++|+.|..|.||.+...+.+..-++|..+|..++|.|-
T Consensus 334 ---------GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~ 404 (636)
T KOG2394|consen 334 ---------GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSD 404 (636)
T ss_pred ---------ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccc
Confidence 2589999999999999999999999999999999999999999999999830
Q ss_pred -----------------------------CcEEEEecCCCeEEEEeCCCC
Q 023643 213 -----------------------------TNQIVTGSEDGTARIWDCKSG 233 (279)
Q Consensus 213 -----------------------------~~~l~~~~~d~~i~vwd~~~~ 233 (279)
...|.+.+.|-.+.+||+...
T Consensus 405 ~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 405 VAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTED 454 (636)
T ss_pred hhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchh
Confidence 015788889999999998654
No 186
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=5.5e-19 Score=136.70 Aligned_cols=224 Identities=19% Similarity=0.262 Sum_probs=152.0
Q ss_pred eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccc-cCCccCeEEE
Q 023643 18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFL-HGHDGPAYDV 96 (279)
Q Consensus 18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~ 96 (279)
.+++.+|.+.|.++.|+. +|.+|++|+.|-.+.|||.-. .++++.+ .+|.+.|.++
T Consensus 43 E~eL~GH~GCVN~LeWn~----dG~lL~SGSDD~r~ivWd~~~-------------------~KllhsI~TgHtaNIFsv 99 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNA----DGELLASGSDDTRLIVWDPFE-------------------YKLLHSISTGHTANIFSV 99 (758)
T ss_pred hhhhccccceecceeecC----CCCEEeecCCcceEEeecchh-------------------cceeeeeecccccceeEE
Confidence 457889999999999999 999999999999999999986 5556655 4799999999
Q ss_pred EecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC-CeEE
Q 023643 97 KFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG-GAIF 175 (279)
Q Consensus 97 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~ 175 (279)
.|.|.....+++||..|..|+++|+...+....-... ..+.. ....+...|..++-.|++ ..+.
T Consensus 100 KFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~----~~~~~-----------~~~cht~rVKria~~p~~Phtfw 164 (758)
T KOG1310|consen 100 KFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGM----EETTR-----------CWSCHTDRVKRIATAPNGPHTFW 164 (758)
T ss_pred eeeccCCCeEEEeccCcceEEEEecccccccccccCc----cchhh-----------hhhhhhhhhhheecCCCCCceEE
Confidence 9999876679999999999999999753222111000 00000 001122246677888887 5889
Q ss_pred EecCCCeEEEEecCCCcEE----------EEeecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCc----------
Q 023643 176 SAAGDSCAYCWDVESSRIK----------MVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGK---------- 234 (279)
Q Consensus 176 ~~~~d~~i~i~d~~~~~~~----------~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~---------- 234 (279)
+++.||+|+-||++....- ..+....-...|+..+|. ..+|+.|+.|-..++||.+...
T Consensus 165 sasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~ 244 (758)
T KOG1310|consen 165 SASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMN 244 (758)
T ss_pred EecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCcccc
Confidence 9999999999999863211 111112234678999995 6789999999999999953211
Q ss_pred --------eEEEecCCccccccC----cceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 235 --------CIKVIDPVKDKQLKG----VISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 235 --------~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
++..+.+-......+ ...-++-+.|+|+|.-|+..-..-.|++||
T Consensus 245 ~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfd 301 (758)
T KOG1310|consen 245 TCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFD 301 (758)
T ss_pred CCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEe
Confidence 122221110000011 112357788999987666654444566654
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.80 E-value=8.9e-17 Score=125.77 Aligned_cols=229 Identities=11% Similarity=0.148 Sum_probs=144.0
Q ss_pred CCceeeecccc-ccccceeeeeecccceEEEEECCCCCCCCCEEEEe-cCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643 2 CGDSTNWDEDA-YRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIA-SSDGSITSYSIPSCISKLPLGLSNSKVQQLLG 79 (279)
Q Consensus 2 dG~v~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 79 (279)
|+.|++|++.. .....++.+. +.+....++++| ++++|+++ ..++.|.+|++.....
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~sp----d~~~lyv~~~~~~~i~~~~~~~~g~---------------- 69 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISP----DKRHLYVGVRPEFRVLSYRIADDGA---------------- 69 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEe-cCCCCccEEECC----CCCEEEEEECCCCcEEEEEECCCCc----------------
Confidence 78999999863 3333444443 346677899999 89988665 4688999999973110
Q ss_pred ccccccccCCccCeEEEEecCCCCceEEEEee-CCCcEEEeecCCCccC-cceeeeccCcccceEEeecCCCCCccccCC
Q 023643 80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCG-DDGRICGWRWKEFTES-KVPINLQGNHVKPVLDLVNHQHKGPWGALS 157 (279)
Q Consensus 80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (279)
...+.... ..+....+.|+|+++ +|++++ .++.|.+|++++.... .......+.
T Consensus 70 l~~~~~~~-~~~~p~~i~~~~~g~--~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~--------------------- 125 (330)
T PRK11028 70 LTFAAESP-LPGSPTHISTDHQGR--FLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL--------------------- 125 (330)
T ss_pred eEEeeeec-CCCCceEEEECCCCC--EEEEEEcCCCeEEEEEECCCCCCCCceeeccCC---------------------
Confidence 01111111 223456899999998 666665 4899999998632111 111111000
Q ss_pred CCCCceeEEEcCCCCeEEEec-CCCeEEEEecCCCcEEE-----Eee-cCCcceEEEEEcCCCcEEEEecC-CCeEEEEe
Q 023643 158 PVPENNAIAVDPQGGAIFSAA-GDSCAYCWDVESSRIKM-----VFK-GHSDYLHCIVARNSTNQIVTGSE-DGTARIWD 229 (279)
Q Consensus 158 ~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~-----~~~-~~~~~i~~i~~~~~~~~l~~~~~-d~~i~vwd 229 (279)
.....++++|+++++++++ .++.|.+||+.+...+. ... ........++|+|+++++++++. ++.|.+|+
T Consensus 126 --~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~ 203 (330)
T PRK11028 126 --EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQ 203 (330)
T ss_pred --CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEE
Confidence 0146788999999886554 56999999997632221 111 12234678999999999887776 99999999
Q ss_pred CCC--Cc--eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC-cceEEeCC
Q 023643 230 CKS--GK--CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA-TNYVILFS 279 (279)
Q Consensus 230 ~~~--~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd 279 (279)
+.. ++ .+..+..... . ..+......+.|+|++++|+++.. ++.|.+|+
T Consensus 204 ~~~~~~~~~~~~~~~~~p~-~-~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~ 256 (330)
T PRK11028 204 LKDPHGEIECVQTLDMMPA-D-FSDTRWAADIHITPDGRHLYACDRTASLISVFS 256 (330)
T ss_pred EeCCCCCEEEEEEEecCCC-c-CCCCccceeEEECCCCCEEEEecCCCCeEEEEE
Confidence 973 33 2333321100 0 011123346889999999998854 68888874
No 188
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.80 E-value=1.4e-17 Score=132.07 Aligned_cols=210 Identities=14% Similarity=0.152 Sum_probs=152.5
Q ss_pred ceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceE
Q 023643 27 TVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDAL 106 (279)
Q Consensus 27 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 106 (279)
.|..++|-| ||..|+.+..+ .+.+||.+. +..+.++++|.+.|++++|+.+|+ .
T Consensus 14 ci~d~afkP----DGsqL~lAAg~-rlliyD~nd-------------------G~llqtLKgHKDtVycVAys~dGk--r 67 (1081)
T KOG1538|consen 14 CINDIAFKP----DGTQLILAAGS-RLLVYDTSD-------------------GTLLQPLKGHKDTVYCVAYAKDGK--R 67 (1081)
T ss_pred chheeEECC----CCceEEEecCC-EEEEEeCCC-------------------cccccccccccceEEEEEEccCCc--e
Confidence 899999999 88887776554 799999998 788899999999999999999998 9
Q ss_pred EEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCC-----------CCcccc-------CCCCCCceeEEEc
Q 023643 107 LLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQH-----------KGPWGA-------LSPVPENNAIAVD 168 (279)
Q Consensus 107 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~-------~~~~~~i~~~~~~ 168 (279)
+++|+.|..|.+|+..-. - .++-.|...+.++..+.- -+-|.. ......+.+++|.
T Consensus 68 FASG~aDK~VI~W~~klE----G--~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWt 141 (1081)
T KOG1538|consen 68 FASGSADKSVIIWTSKLE----G--ILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWT 141 (1081)
T ss_pred eccCCCceeEEEeccccc----c--eeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeec
Confidence 999999999999985321 1 111222233333321111 111111 1112457899999
Q ss_pred CCCCeEEEecCCCeEEEEecCCCcEEEEee---cCCcceEEEEEcCCC-----cEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 169 PQGGAIFSAAGDSCAYCWDVESSRIKMVFK---GHSDYLHCIVARNST-----NQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 169 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~i~~i~~~~~~-----~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
.||.+++.|-.+|+|.+-+- ++++...+. +..++|.+++|+|.. ..++......++.+|.+ +|+.+..-
T Consensus 142 nDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~- 218 (1081)
T KOG1538|consen 142 NDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKD- 218 (1081)
T ss_pred CCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeeccc-
Confidence 99999999999999999864 455544444 367899999999952 46777778888888876 45544422
Q ss_pred CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
+.-...-.|+.+.++|.+++.|+.|+.+.+|
T Consensus 219 -------r~L~FdP~CisYf~NGEy~LiGGsdk~L~~f 249 (1081)
T KOG1538|consen 219 -------RALNFDPCCISYFTNGEYILLGGSDKQLSLF 249 (1081)
T ss_pred -------ccCCCCchhheeccCCcEEEEccCCCceEEE
Confidence 1222334688999999999999999988876
No 189
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.80 E-value=1.2e-16 Score=124.94 Aligned_cols=231 Identities=8% Similarity=0.070 Sum_probs=141.0
Q ss_pred CCceeeecccc-ccccceeeeeecccceEEEEECCCCCCCCCEEEEec-CCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643 2 CGDSTNWDEDA-YRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS-SDGSITSYSIPSCISKLPLGLSNSKVQQLLG 79 (279)
Q Consensus 2 dG~v~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 79 (279)
++.|.+|+++. .......... .......++|+| ++++|++++ .++.|.+|++++....
T Consensus 56 ~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~----~g~~l~v~~~~~~~v~v~~~~~~g~~--------------- 115 (330)
T PRK11028 56 EFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH----QGRFLFSASYNANCVSVSPLDKDGIP--------------- 115 (330)
T ss_pred CCcEEEEEECCCCceEEeeeec-CCCCceEEEECC----CCCEEEEEEcCCCeEEEEEECCCCCC---------------
Confidence 46778888762 2222222222 234567899999 888887765 5889999999742110
Q ss_pred ccccccccCCccCeEEEEecCCCCceEE-EEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643 80 IEPDGFLHGHDGPAYDVKFYGGNEDALL-LSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP 158 (279)
Q Consensus 80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (279)
.+.+..+. +......++++|+++ ++ ++...++.|.+||+++......... .. + ... ..
T Consensus 116 ~~~~~~~~-~~~~~~~~~~~p~g~--~l~v~~~~~~~v~v~d~~~~g~l~~~~~----~~--~-~~~--~g--------- 174 (330)
T PRK11028 116 VAPIQIIE-GLEGCHSANIDPDNR--TLWVPCLKEDRIRLFTLSDDGHLVAQEP----AE--V-TTV--EG--------- 174 (330)
T ss_pred CCceeecc-CCCcccEeEeCCCCC--EEEEeeCCCCEEEEEEECCCCcccccCC----Cc--e-ecC--CC---------
Confidence 01112222 223466788999997 55 5666679999999864211100000 00 0 000 00
Q ss_pred CCCceeEEEcCCCCeEEEecC-CCeEEEEecCC--C--cEEEEeecC------CcceEEEEEcCCCcEEEEecC-CCeEE
Q 023643 159 VPENNAIAVDPQGGAIFSAAG-DSCAYCWDVES--S--RIKMVFKGH------SDYLHCIVARNSTNQIVTGSE-DGTAR 226 (279)
Q Consensus 159 ~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~--~--~~~~~~~~~------~~~i~~i~~~~~~~~l~~~~~-d~~i~ 226 (279)
.....+.|+|++++++++.. ++.|.+||++. + +.+..+... ......+.++|++++++++.. ++.|.
T Consensus 175 -~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~ 253 (330)
T PRK11028 175 -AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLIS 253 (330)
T ss_pred -CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEE
Confidence 01467899999999988876 89999999973 3 233333221 122346889999999888854 78999
Q ss_pred EEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC-cceEEeCC
Q 023643 227 IWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA-TNYVILFS 279 (279)
Q Consensus 227 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd 279 (279)
+|++........+.... .. ......++|+|+|++|+++.. +++|.+|+
T Consensus 254 v~~i~~~~~~~~~~~~~----~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 254 VFSVSEDGSVLSFEGHQ----PT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred EEEEeCCCCeEEEeEEE----ec-cccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 99986532211211000 11 123457899999999998765 88999883
No 190
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=9.4e-19 Score=130.37 Aligned_cols=161 Identities=19% Similarity=0.324 Sum_probs=129.5
Q ss_pred ccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcc--eeeeccCcccceEEeecCCCCCccccCCCCCCceeEEE
Q 023643 90 DGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKV--PINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAV 167 (279)
Q Consensus 90 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 167 (279)
..+|.++.|.++.. +.|+||+.|..|++|.++....... ...+.. . ...|..+|+++.|
T Consensus 13 ~~pv~s~dfq~n~~-~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s---------~---------Ls~H~~aVN~vRf 73 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSL-NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLS---------S---------LSRHTRAVNVVRF 73 (434)
T ss_pred CCceEEEEeccCcc-cceecccCccceeeeeeeecCCCCCceeEEEee---------c---------ccCCcceeEEEEE
Confidence 35799999998876 4899999999999999875433321 111110 0 0112235899999
Q ss_pred cCCCCeEEEecCCCeEEEEecC--------C--------CcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC
Q 023643 168 DPQGGAIFSAAGDSCAYCWDVE--------S--------SRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK 231 (279)
Q Consensus 168 ~~~~~~l~~~~~d~~i~i~d~~--------~--------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~ 231 (279)
+|+|..|++|+.+|.|.+|-.. + ......+.+|...|+.++|+|+++++++++.|+.+++||+.
T Consensus 74 ~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~ 153 (434)
T KOG1009|consen 74 SPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH 153 (434)
T ss_pred cCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec
Confidence 9999999999999999999765 2 23445677899999999999999999999999999999999
Q ss_pred CCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643 232 SGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL 277 (279)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 277 (279)
.|+....+ .+|...+..++|+|-++++++=+.|...+.
T Consensus 154 ~G~l~~~~--------~dh~~yvqgvawDpl~qyv~s~s~dr~~~~ 191 (434)
T KOG1009|consen 154 AGQLLAIL--------DDHEHYVQGVAWDPLNQYVASKSSDRHPEG 191 (434)
T ss_pred cceeEeec--------cccccccceeecchhhhhhhhhccCcccce
Confidence 99999998 788899999999999999998888764443
No 191
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.80 E-value=9.9e-18 Score=140.65 Aligned_cols=225 Identities=16% Similarity=0.148 Sum_probs=159.2
Q ss_pred eccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccccccc
Q 023643 8 WDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLH 87 (279)
Q Consensus 8 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (279)
|++++ ..+..+..|...|..++.++. ++.++++|+.||+|++|+.......... .+...++.
T Consensus 1034 W~p~G---~lVAhL~Ehs~~v~k~a~s~~---~~s~FvsgS~DGtVKvW~~~k~~~~~~s------------~rS~ltys 1095 (1431)
T KOG1240|consen 1034 WNPRG---ILVAHLHEHSSAVIKLAVSSE---HTSLFVSGSDDGTVKVWNLRKLEGEGGS------------ARSELTYS 1095 (1431)
T ss_pred CCccc---eEeehhhhccccccceeecCC---CCceEEEecCCceEEEeeehhhhcCcce------------eeeeEEEe
Confidence 66666 556677778899999999883 6699999999999999999864321100 22333444
Q ss_pred CCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcce----eeeccCcccceEEeecCCCCCccccCCCCCCce
Q 023643 88 GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVP----INLQGNHVKPVLDLVNHQHKGPWGALSPVPENN 163 (279)
Q Consensus 88 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 163 (279)
.-..++.++.+++.+. .+|.++.||.|++.+++........ ..........+ +.
T Consensus 1096 ~~~sr~~~vt~~~~~~--~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~v--------------------v~ 1153 (1431)
T KOG1240|consen 1096 PEGSRVEKVTMCGNGD--QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVV--------------------VS 1153 (1431)
T ss_pred ccCCceEEEEeccCCC--eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCce--------------------EE
Confidence 3567899999999998 9999999999999998753111111 01111111111 33
Q ss_pred eEEEcC-CCC-eEEEecCCCeEEEEecCCCcEEEEee--cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEe
Q 023643 164 AIAVDP-QGG-AIFSAAGDSCAYCWDVESSRIKMVFK--GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239 (279)
Q Consensus 164 ~~~~~~-~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 239 (279)
..++.. ... .++.+..-+.|..||+++......++ ...+.|++++.+|.+.+++.|+..|.+.+||+|-+.++..+
T Consensus 1154 m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw 1233 (1431)
T KOG1240|consen 1154 MHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSW 1233 (1431)
T ss_pred eecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecc
Confidence 334433 222 67778888999999999876665554 34578999999999999999999999999999999999888
Q ss_pred cCCccccccCcceeeeEEEEcCC---CCEEEEEc--CcceEEeCC
Q 023643 240 DPVKDKQLKGVISCVSCITLDAS---ESWLVRVR--ATNYVILFS 279 (279)
Q Consensus 240 ~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~--~d~~i~~wd 279 (279)
. ..+..++..+..+|- ....++++ ..+.|.+|+
T Consensus 1234 ~-------~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1234 E-------HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred c-------CcccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence 6 345577888877763 34555443 467788885
No 192
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=1.1e-17 Score=138.50 Aligned_cols=232 Identities=14% Similarity=0.144 Sum_probs=150.5
Q ss_pred CCCceeeecc-cc--ccccceeeeee---c----ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccC
Q 023643 1 MCGDSTNWDE-DA--YRKSILKEREI---L----TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLS 70 (279)
Q Consensus 1 ~dG~v~iw~~-~~--~~~~~~~~~~~---~----~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 70 (279)
.||.||||+. .. .+.+++..+.+ + .+.=.-+.|... .|.++++ +.-..|+|||....
T Consensus 1131 ~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~---~G~Ll~t-Gd~r~IRIWDa~~E--------- 1197 (1387)
T KOG1517|consen 1131 SDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQ---SGHLLVT-GDVRSIRIWDAHKE--------- 1197 (1387)
T ss_pred cCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhh---CCeEEec-CCeeEEEEEecccc---------
Confidence 3899999972 11 22233332221 1 111133566662 4555544 55789999999873
Q ss_pred Ccccceeeecccccccc-CCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCC
Q 023643 71 NSKVQQLLGIEPDGFLH-GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQH 149 (279)
Q Consensus 71 ~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (279)
.....+. +-...|+++.-.... ++.++.|..||+|++||.+.......+.....+...
T Consensus 1198 ----------~~~~diP~~s~t~vTaLS~~~~~-gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~---------- 1256 (1387)
T KOG1517|consen 1198 ----------QVVADIPYGSSTLVTALSADLVH-GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV---------- 1256 (1387)
T ss_pred ----------eeEeecccCCCccceeecccccC-CceEEEeecCCceEEeecccCCccccceeecccCCc----------
Confidence 2222222 234456666554433 249999999999999998764333222222222111
Q ss_pred CCccccCCCCCCceeEEEcCCCC-eEEEecCCCeEEEEecCCCcEEE--EeecCC--c-ceEEEEEcCCCcEEEEecCCC
Q 023643 150 KGPWGALSPVPENNAIAVDPQGG-AIFSAAGDSCAYCWDVESSRIKM--VFKGHS--D-YLHCIVARNSTNQIVTGSEDG 223 (279)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~--~-~i~~i~~~~~~~~l~~~~~d~ 223 (279)
..|..+.+.+.|- .|++|+.+|.|++||++...... ....|. + .++++..+++...+++|+. +
T Consensus 1257 ----------~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q 1325 (1387)
T KOG1517|consen 1257 ----------EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-Q 1325 (1387)
T ss_pred ----------ccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-c
Confidence 1267888887665 59999999999999999752222 222232 3 5899999999999999998 9
Q ss_pred eEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 224 TARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 224 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.|+||++. |+.+..+.... ..+......+.|++|+|..-.||+|+.|.+|.+|.
T Consensus 1326 ~ikIy~~~-G~~l~~~k~n~-~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1326 LIKIYSLS-GEQLNIIKYNP-GFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred eEEEEecC-hhhhcccccCc-ccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 99999974 66666654321 11223345679999999999999999999999984
No 193
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=2.5e-17 Score=122.39 Aligned_cols=214 Identities=14% Similarity=0.153 Sum_probs=152.8
Q ss_pred CCceeeecccccc--ccceeeeeecccceEEEEECCCCCCCCCEEEEecCC--CcEEEEeCCCCCcccccccCCccccee
Q 023643 2 CGDSTNWDEDAYR--KSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSD--GSITSYSIPSCISKLPLGLSNSKVQQL 77 (279)
Q Consensus 2 dG~v~iw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~ 77 (279)
+|.+.+|..+... ...+..+..+ .++..+.-+|. +...+|+|+.. ..+.|||++... ..+...+...+.+
T Consensus 124 sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~---~p~Iva~GGke~~n~lkiwdle~~~--qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 124 SGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDT---DPYIVATGGKENINELKIWDLEQSK--QIWSAKNVPNDRL 197 (412)
T ss_pred CCcEEEEeccCCccccccceeeecC-CceeeeccCCC---CCceEecCchhcccceeeeecccce--eeeeccCCCCccc
Confidence 6889999877433 1223333333 56777887873 67788889998 899999999862 2222222211111
Q ss_pred eeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643 78 LGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS 157 (279)
Q Consensus 78 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (279)
- ++ -.-.++++.|.+......|+++..-+.+++||++..+. |+..+....
T Consensus 198 ~-------Lr-VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR-------------PV~~fd~~E--------- 247 (412)
T KOG3881|consen 198 G-------LR-VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR-------------PVAQFDFLE--------- 247 (412)
T ss_pred c-------ce-eeeeeccceecCCCCCceEEEEecceeEEEecCcccCc-------------ceeEecccc---------
Confidence 0 00 11235678898873334899999999999999874322 222221111
Q ss_pred CCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEE-eecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE
Q 023643 158 PVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMV-FKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI 236 (279)
Q Consensus 158 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~ 236 (279)
..++++...|.++.+++|..-+.+..+|++.++.... +++..+.|+++..+|.+.++++++.|+.|||+|+.+.+++
T Consensus 248 --~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 248 --NPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred --CcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 1378999999999999999999999999999988876 8899999999999999999999999999999999997777
Q ss_pred EEecCCccccccCcceeeeEEEEcCC
Q 023643 237 KVIDPVKDKQLKGVISCVSCITLDAS 262 (279)
Q Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~~~~ 262 (279)
.... -...++++.+.++
T Consensus 326 ~kvY---------vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 326 HKVY---------VKSRLTFILLRDD 342 (412)
T ss_pred hhhh---------hhccccEEEecCC
Confidence 6652 2234566666554
No 194
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.78 E-value=8.2e-18 Score=129.96 Aligned_cols=199 Identities=13% Similarity=0.130 Sum_probs=146.5
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
||.+.+-+-.+ ...+....|.+.+.+-.|+| +|.-|++++.||.|++|.-.. -
T Consensus 84 DGkf~il~k~~---rVE~sv~AH~~A~~~gRW~~----dGtgLlt~GEDG~iKiWSrsG--------------------M 136 (737)
T KOG1524|consen 84 DGRFVILNKSA---RVERSISAHAAAISSGRWSP----DGAGLLTAGEDGVIKIWSRSG--------------------M 136 (737)
T ss_pred CceEEEecccc---hhhhhhhhhhhhhhhcccCC----CCceeeeecCCceEEEEeccc--------------------h
Confidence 55555555333 33456678999999999999 999999999999999999764 3
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
...++.....+|.|++|.|+.+ +.+.+.+ +.+.|--+.. ...+...+.| .+-
T Consensus 137 LRStl~Q~~~~v~c~~W~p~S~-~vl~c~g--~h~~IKpL~~---n~k~i~WkAH----------------------DGi 188 (737)
T KOG1524|consen 137 LRSTVVQNEESIRCARWAPNSN-SIVFCQG--GHISIKPLAA---NSKIIRWRAH----------------------DGL 188 (737)
T ss_pred HHHHHhhcCceeEEEEECCCCC-ceEEecC--CeEEEeeccc---ccceeEEecc----------------------CcE
Confidence 3445556778899999999987 3455444 4455444321 1222222222 123
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
|.++.|++..+.+++|+.|-..++||.. |..+..-..|+.+|++++|.|+ ..++.+|.+ ++| +.
T Consensus 189 iL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R------------~~- 252 (737)
T KOG1524|consen 189 VLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TAR------------FS- 252 (737)
T ss_pred EEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeee-eee------------ec-
Confidence 7899999999999999999999999975 7788877889999999999999 666655532 233 22
Q ss_pred CccccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643 242 VKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL 277 (279)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 277 (279)
....+.|..++||+||..+++|+..|.+.+
T Consensus 253 ------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 253 ------SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 334467889999999999999999887653
No 195
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.78 E-value=2.8e-17 Score=119.20 Aligned_cols=189 Identities=13% Similarity=0.114 Sum_probs=147.2
Q ss_pred Cceeeecccccc-ccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 3 GDSTNWDEDAYR-KSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 3 G~v~iw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
..|.||...+.. .+...++..|...|+.+.|+| ..+.|++++.|..-++|....+.. .+
T Consensus 32 ~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap----~snrIvtcs~drnayVw~~~~~~~----------------Wk 91 (361)
T KOG1523|consen 32 HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP----KSNRIVTCSHDRNAYVWTQPSGGT----------------WK 91 (361)
T ss_pred ceEEEEEecCCCCceeceehhhhCcceeEEeecC----CCCceeEccCCCCccccccCCCCe----------------ec
Confidence 467788876666 667888999999999999999 899999999999999999843211 56
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
+...+..+...++++.|+|.++ .|++||....|.||-++....- -...+..+|+. ..
T Consensus 92 ptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdW----WVsKhikkPir-----------------St 148 (361)
T KOG1523|consen 92 PTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDW----WVSKHIKKPIR-----------------ST 148 (361)
T ss_pred cceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccce----ehhhhhCCccc-----------------cc
Confidence 6667777999999999999998 9999999999999987532111 11111112211 13
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecC-----C-------------CcEEEEeecCCcceEEEEEcCCCcEEEEecCCC
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVE-----S-------------SRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG 223 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~-----~-------------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~ 223 (279)
|++++|+|++-+|++|+.|+..+++..- . |++..++....+.+..+.|+|+|..|+-.+.|.
T Consensus 149 v~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds 228 (361)
T KOG1523|consen 149 VTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDS 228 (361)
T ss_pred eeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCC
Confidence 7999999999999999999999998642 1 233344445668899999999999999999999
Q ss_pred eEEEEeCCCCc
Q 023643 224 TARIWDCKSGK 234 (279)
Q Consensus 224 ~i~vwd~~~~~ 234 (279)
.+.+=|.....
T Consensus 229 ~v~~~da~~p~ 239 (361)
T KOG1523|consen 229 TVSFVDAAGPS 239 (361)
T ss_pred ceEEeecCCCc
Confidence 99998876543
No 196
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.77 E-value=3.5e-18 Score=120.72 Aligned_cols=172 Identities=16% Similarity=0.202 Sum_probs=126.4
Q ss_pred cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643 26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA 105 (279)
Q Consensus 26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 105 (279)
+.+.+..+.-. ....-+|++|..+|.+.+||+.++.....+... .+.+.....|.++|.++.+.+.-.
T Consensus 151 gsvmc~~~~~~-c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~---------~kv~~~~ash~qpvlsldyas~~~-- 218 (323)
T KOG0322|consen 151 GSVMCQDKDHA-CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQS---------SKVESPNASHKQPVLSLDYASSCD-- 218 (323)
T ss_pred Cceeeeecccc-ccceEEEEEeccCCeEEEEEccCCceeeccccc---------cccccchhhccCcceeeeechhhc--
Confidence 44555554321 012235678889999999999985322211111 233344567999999999998665
Q ss_pred EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEE
Q 023643 106 LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYC 185 (279)
Q Consensus 106 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 185 (279)
.=++|+.+..+..|+++.....-.... ..++.+ ..|..+.+-||++.+++++.|+.|++
T Consensus 219 rGisgga~dkl~~~Sl~~s~gslq~~~--------e~~lkn-------------pGv~gvrIRpD~KIlATAGWD~RiRV 277 (323)
T KOG0322|consen 219 RGISGGADDKLVMYSLNHSTGSLQIRK--------EITLKN-------------PGVSGVRIRPDGKILATAGWDHRIRV 277 (323)
T ss_pred CCcCCCccccceeeeeccccCcccccc--------eEEecC-------------CCccceEEccCCcEEeecccCCcEEE
Confidence 678888899999999864311111000 001111 13678899999999999999999999
Q ss_pred EecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeC
Q 023643 186 WDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDC 230 (279)
Q Consensus 186 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~ 230 (279)
|.-++..++..++.|.+.|.+++|+|+...+++++.|++|.+|++
T Consensus 278 yswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 278 YSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999999999999986
No 197
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=9.2e-17 Score=119.41 Aligned_cols=192 Identities=17% Similarity=0.132 Sum_probs=148.2
Q ss_pred CEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCC--CcEEEe
Q 023643 42 DTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDD--GRICGW 119 (279)
Q Consensus 42 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d--g~i~iw 119 (279)
..|++|-.+|.+.+|....+... ..+...+..+ ..+..+.-++..+ ..+++||.. ..+.+|
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~h---------------ss~l~~la~g-~g~~~~r~~~~~p-~Iva~GGke~~n~lkiw 178 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLH---------------SSKLIKLATG-PGLYDVRQTDTDP-YIVATGGKENINELKIW 178 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccc---------------cccceeeecC-CceeeeccCCCCC-ceEecCchhcccceeee
Confidence 46778889999999999853210 1122223323 3466677777666 467779988 899999
Q ss_pred ecCCCccCcceeeecc---C---cccceEEeecCCCCCccccCCCCCCceeEEEcCC--CCeEEEecCCCeEEEEecCCC
Q 023643 120 RWKEFTESKVPINLQG---N---HVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ--GGAIFSAAGDSCAYCWDVESS 191 (279)
Q Consensus 120 ~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~ 191 (279)
|++.. ..+..-+. . -..|+ +++.+.|-+. ...|++++.-+.+++||++.+
T Consensus 179 dle~~---~qiw~aKNvpnD~L~LrVPv-------------------W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q 236 (412)
T KOG3881|consen 179 DLEQS---KQIWSAKNVPNDRLGLRVPV-------------------WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ 236 (412)
T ss_pred ecccc---eeeeeccCCCCccccceeee-------------------eeccceecCCCCCceEEEEecceeEEEecCccc
Confidence 98653 21111111 1 11122 3678899887 789999999999999999875
Q ss_pred -cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643 192 -RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR 270 (279)
Q Consensus 192 -~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 270 (279)
+++..|..-+.+++++...|.++++++|..-|.+..||++.++...... .+..+.|+++..+|..++|++++
T Consensus 237 RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~-------kg~tGsirsih~hp~~~~las~G 309 (412)
T KOG3881|consen 237 RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL-------KGITGSIRSIHCHPTHPVLASCG 309 (412)
T ss_pred CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecccc-------CCccCCcceEEEcCCCceEEeec
Confidence 6888888888999999999999999999999999999999999887731 67888999999999999999999
Q ss_pred CcceEEeCC
Q 023643 271 ATNYVILFS 279 (279)
Q Consensus 271 ~d~~i~~wd 279 (279)
-|..+||+|
T Consensus 310 LDRyvRIhD 318 (412)
T KOG3881|consen 310 LDRYVRIHD 318 (412)
T ss_pred cceeEEEee
Confidence 999999987
No 198
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.77 E-value=2.2e-16 Score=114.47 Aligned_cols=173 Identities=14% Similarity=0.189 Sum_probs=124.5
Q ss_pred CcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcce
Q 023643 51 GSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVP 130 (279)
Q Consensus 51 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 130 (279)
..|.|||=.. .+++..+. -..+|.++.+.++ .|+..- .+.|.+|...+.......
T Consensus 75 NkviIWDD~k-------------------~~~i~el~-f~~~I~~V~l~r~----riVvvl-~~~I~VytF~~n~k~l~~ 129 (346)
T KOG2111|consen 75 NKVIIWDDLK-------------------ERCIIELS-FNSEIKAVKLRRD----RIVVVL-ENKIYVYTFPDNPKLLHV 129 (346)
T ss_pred ceEEEEeccc-------------------CcEEEEEE-eccceeeEEEcCC----eEEEEe-cCeEEEEEcCCChhheee
Confidence 4799999433 34444444 5678999999887 455443 578999997643222221
Q ss_pred eeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC-C-eEEE-ecCCCeEEEEecCCCcE--EEEeecCCcceE
Q 023643 131 INLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG-G-AIFS-AAGDSCAYCWDVESSRI--KMVFKGHSDYLH 205 (279)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~-~l~~-~~~d~~i~i~d~~~~~~--~~~~~~~~~~i~ 205 (279)
.....+... -++..|.. . +|+. |-.-|.|.|-|+...+. ...+..|.+.|.
T Consensus 130 ~et~~NPkG------------------------lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Ia 185 (346)
T KOG2111|consen 130 IETRSNPKG------------------------LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIA 185 (346)
T ss_pred eecccCCCc------------------------eEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCcee
Confidence 111111111 12233322 2 3332 45569999999986655 467889999999
Q ss_pred EEEEcCCCcEEEEecCCCe-EEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 206 CIVARNSTNQIVTGSEDGT-ARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 206 ~i~~~~~~~~l~~~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
|++.+-+|..+|++|..|+ |||||..+|+.+..++. ......|.+++|+|+..+||++|..|++++|
T Consensus 186 cv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR------G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 186 CVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR------GVDRADIYCIAFSPNSSWLAVSSDKGTLHIF 253 (346)
T ss_pred EEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec------CCchheEEEEEeCCCccEEEEEcCCCeEEEE
Confidence 9999999999999999998 79999999999999863 2234689999999999999999999999987
No 199
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.4e-16 Score=115.52 Aligned_cols=229 Identities=14% Similarity=0.187 Sum_probs=140.4
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccc-ccccCCcccceeeec
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKL-PLGLSNSKVQQLLGI 80 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (279)
|-.||+||-+......++. .....|++++|-|. .+..|++|+..| |.+|......... ... ..... .
T Consensus 119 ddvVriy~ksst~pt~Lks--~sQrnvtclawRPl---saselavgCr~g-IciW~~s~tln~~r~~~--~~s~~----~ 186 (445)
T KOG2139|consen 119 DDVVRIYDKSSTCPTKLKS--VSQRNVTCLAWRPL---SASELAVGCRAG-ICIWSDSRTLNANRNIR--MMSTH----H 186 (445)
T ss_pred CcEEEEeccCCCCCceecc--hhhcceeEEEeccC---Ccceeeeeecce-eEEEEcCcccccccccc--ccccc----c
Confidence 6688999966633222222 23467999999995 677888888765 8999886531110 000 00000 1
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeC-CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGD-DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV 159 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (279)
..+..-.+| .+|+++.|.+++. .+++++. |..|.|||.++....... ..+ .
T Consensus 187 ~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~--~~g-----------------------l 238 (445)
T KOG2139|consen 187 LQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLI--PKG-----------------------L 238 (445)
T ss_pred hhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCccccc--ccC-----------------------C
Confidence 111222345 6899999999998 8888875 678999998765332222 111 0
Q ss_pred CCceeEEEcCCCCeEEEecCCCeEEEEecCC-CcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC-ce--
Q 023643 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVES-SRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG-KC-- 235 (279)
Q Consensus 160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~-~~-- 235 (279)
+.++-+.|+||+.+|+.++-|+..++|+... ....+-. ...+.|...+|+|+|++|+..+. |.-++|.+... +.
T Consensus 239 gg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~-lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~ 316 (445)
T KOG2139|consen 239 GGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI-LGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSV 316 (445)
T ss_pred CceeeEEEcCCCCEEEEecccceeeeehhcccceeccee-ccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCcc
Confidence 1267899999999999999999999996543 3333322 24558999999999988665432 23344444221 10
Q ss_pred -E------EEe---cCCccccc---cCcceeeeEEEEcCCCCEEEEEcCc
Q 023643 236 -I------KVI---DPVKDKQL---KGVISCVSCITLDASESWLVRVRAT 272 (279)
Q Consensus 236 -~------~~~---~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d 272 (279)
. ..+ +.++.... .--.+...+++|+|.|.+||+.-..
T Consensus 317 ~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 317 FLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred ccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 0 000 00000000 1123578999999999999987543
No 200
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.3e-16 Score=117.64 Aligned_cols=199 Identities=13% Similarity=0.125 Sum_probs=139.7
Q ss_pred ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccccccc-CCccCeEEEEecCCCC
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLH-GHDGPAYDVKFYGGNE 103 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~ 103 (279)
...+..++|++ .-..+|++..|..|++|+-... ....++ ..+..|++++|-|.+.
T Consensus 98 ~~dlr~~aWhq----H~~~fava~nddvVriy~ksst--------------------~pt~Lks~sQrnvtclawRPlsa 153 (445)
T KOG2139|consen 98 EIDLRGVAWHQ----HIIAFAVATNDDVVRIYDKSST--------------------CPTKLKSVSQRNVTCLAWRPLSA 153 (445)
T ss_pred hcceeeEeech----hhhhhhhhccCcEEEEeccCCC--------------------CCceecchhhcceeEEEeccCCc
Confidence 34678899999 6778899999999999998752 122232 2356799999999876
Q ss_pred ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC-CCe
Q 023643 104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG-DSC 182 (279)
Q Consensus 104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~ 182 (279)
..|+.|+. +-|.+|..+..............+...+.. .+++ ..|+++.|++||..+++++. |..
T Consensus 154 -selavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~--~pgh----------~pVtsmqwn~dgt~l~tAS~gsss 219 (445)
T KOG2139|consen 154 -SELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQ--DPGH----------NPVTSMQWNEDGTILVTASFGSSS 219 (445)
T ss_pred -ceeeeeec-ceeEEEEcCcccccccccccccccchhhee--CCCC----------ceeeEEEEcCCCCEEeecccCcce
Confidence 36777765 559999976433322222222222222211 1111 24899999999999998775 678
Q ss_pred EEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCC
Q 023643 183 AYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS 262 (279)
Q Consensus 183 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 262 (279)
|.|||.+++..+.......+.+.-+.||||+.+|+++..|+..++|........... .--.+.|+..+|+|+
T Consensus 220 i~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw--------~lgsgrvqtacWspc 291 (445)
T KOG2139|consen 220 IMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERW--------ILGSGRVQTACWSPC 291 (445)
T ss_pred EEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecce--------eccCCceeeeeecCC
Confidence 999999998776655445677889999999999999999999999965443222222 122238999999999
Q ss_pred CCEEEEE
Q 023643 263 ESWLVRV 269 (279)
Q Consensus 263 ~~~l~~~ 269 (279)
|++|+-+
T Consensus 292 GsfLLf~ 298 (445)
T KOG2139|consen 292 GSFLLFA 298 (445)
T ss_pred CCEEEEE
Confidence 9876543
No 201
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.76 E-value=1.6e-16 Score=113.55 Aligned_cols=106 Identities=16% Similarity=0.221 Sum_probs=85.7
Q ss_pred CceeEEEcCCCCeEEEe--cCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC---CCeEEEEeCCCCce
Q 023643 161 ENNAIAVDPQGGAIFSA--AGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE---DGTARIWDCKSGKC 235 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---d~~i~vwd~~~~~~ 235 (279)
.|.+++|+|+++.|++. ..+..|.+||++ ++.+..+. ...+..+.|+|+|++|++++. .|.|.+||.++.+.
T Consensus 61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~ 137 (194)
T PF08662_consen 61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK 137 (194)
T ss_pred ceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE
Confidence 37999999999987654 456799999997 66666664 567789999999999999864 46799999998888
Q ss_pred EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC------cceEEeCC
Q 023643 236 IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA------TNYVILFS 279 (279)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~~wd 279 (279)
+.... | ..++.++|+|+|++|++++. |+.++||+
T Consensus 138 i~~~~---------~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 138 ISTFE---------H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred eeccc---------c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence 87762 2 23689999999999998864 77788884
No 202
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.76 E-value=2e-17 Score=127.86 Aligned_cols=173 Identities=15% Similarity=0.223 Sum_probs=134.0
Q ss_pred CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEe
Q 023643 40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGW 119 (279)
Q Consensus 40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 119 (279)
..+.|+.+++||.+.|.+-. ++..+.+..|.+.+.+-.|+|+|. -|+|++.||.|++|
T Consensus 74 ~~d~~~i~s~DGkf~il~k~--------------------~rVE~sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiW 131 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILNKS--------------------ARVERSISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIW 131 (737)
T ss_pred CcceEEEEcCCceEEEeccc--------------------chhhhhhhhhhhhhhhcccCCCCc--eeeeecCCceEEEE
Confidence 34678889999999998765 466677888999999999999998 89999999999999
Q ss_pred ecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec
Q 023643 120 RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG 199 (279)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 199 (279)
.-.- .....+. ... ..|+|++|.|+.+.++-+. .+.+.|=-+.....+-..+.
T Consensus 132 SrsG----MLRStl~-Q~~---------------------~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkA 184 (737)
T KOG1524|consen 132 SRSG----MLRSTVV-QNE---------------------ESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRA 184 (737)
T ss_pred eccc----hHHHHHh-hcC---------------------ceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEec
Confidence 8321 1111111 111 1379999999877554333 35566666665666667889
Q ss_pred CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643 200 HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA 271 (279)
Q Consensus 200 ~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 271 (279)
|.+-|.++.|++..+.+++|++|-..+|||- .|+.+..- ..|.-+|++++|.|+ ..++.+|.
T Consensus 185 HDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S--------~~~ey~ITSva~npd-~~~~v~S~ 246 (737)
T KOG1524|consen 185 HDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTS--------AAEEYAITSVAFNPE-KDYLLWSY 246 (737)
T ss_pred cCcEEEEeecCccccceeecCCceeEEeecc-cCcccccC--------Chhccceeeeeeccc-cceeeeee
Confidence 9999999999999999999999999999995 56666665 578889999999999 66666654
No 203
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.76 E-value=4.6e-19 Score=143.21 Aligned_cols=200 Identities=17% Similarity=0.263 Sum_probs=148.9
Q ss_pred eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643 18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK 97 (279)
Q Consensus 18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 97 (279)
++.+.+|...|+|+.|.. .|.++++|+.|..++||...+ ..+....+||.+.++.++
T Consensus 183 ikrLlgH~naVyca~fDr----tg~~Iitgsdd~lvKiwS~et-------------------~~~lAs~rGhs~ditdla 239 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDR----TGRYIITGSDDRLVKIWSMET-------------------ARCLASCRGHSGDITDLA 239 (1113)
T ss_pred HHHHHhhhhheeeeeecc----ccceEeecCccceeeeeeccc-------------------hhhhccCCCCccccchhc
Confidence 556779999999999999 899999999999999999988 788899999999999999
Q ss_pred ecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe
Q 023643 98 FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA 177 (279)
Q Consensus 98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 177 (279)
.+.+.. ++++++.|..|++|.+.+. ..+..+.++. ++|++++|+|-. +.
T Consensus 240 vs~~n~--~iaaaS~D~vIrvWrl~~~---~pvsvLrght----------------------gavtaiafsP~~----ss 288 (1113)
T KOG0644|consen 240 VSSNNT--MIAAASNDKVIRVWRLPDG---APVSVLRGHT----------------------GAVTAIAFSPRA----SS 288 (1113)
T ss_pred cchhhh--hhhhcccCceEEEEecCCC---chHHHHhccc----------------------cceeeeccCccc----cC
Confidence 998887 9999999999999998654 2333333322 248999999953 67
Q ss_pred cCCCeEEEEecCCC--------------cEEEEee----------------cCCcceEEEEEcCCC-----------cEE
Q 023643 178 AGDSCAYCWDVESS--------------RIKMVFK----------------GHSDYLHCIVARNST-----------NQI 216 (279)
Q Consensus 178 ~~d~~i~i~d~~~~--------------~~~~~~~----------------~~~~~i~~i~~~~~~-----------~~l 216 (279)
+.||++++||.+-. ..+..+. .......+++|.... .+.
T Consensus 289 s~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~ 368 (1113)
T KOG0644|consen 289 SDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIV 368 (1113)
T ss_pred CCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccc
Confidence 88999999998711 0111100 000011122222222 233
Q ss_pred EEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCC-CEEEEEcCcceEEeCC
Q 023643 217 VTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASE-SWLVRVRATNYVILFS 279 (279)
Q Consensus 217 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd 279 (279)
+++-.+-.+++|++.+|++.+.+ .+|...+..+.++|-+ +...+++.||...|||
T Consensus 369 ~~ar~~~~~~vwnl~~g~l~H~l--------~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 369 VTARNDHRLCVWNLYTGQLLHNL--------MGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred eeeeeeeEeeeeecccchhhhhh--------cccccceeeeeecCCCcHhhhhccCCCceEeee
Confidence 33444556888888888888887 7888899999999954 5556889999999997
No 204
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=9.3e-17 Score=133.23 Aligned_cols=229 Identities=18% Similarity=0.199 Sum_probs=151.6
Q ss_pred ceeeeccccccccceeeee---ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCC--cccccccCCcccceee
Q 023643 4 DSTNWDEDAYRKSILKERE---ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCI--SKLPLGLSNSKVQQLL 78 (279)
Q Consensus 4 ~v~iw~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~ 78 (279)
.|+|||.+..+. +..+. .....|+.+.+-.. .|..++++|+.||.||||+-.... ....+.
T Consensus 1087 ~i~vwd~e~~~~--l~~F~n~~~~~t~Vs~l~liNe--~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVT---------- 1152 (1387)
T KOG1517|consen 1087 RIRVWDWEKGRL--LNGFDNGAFPDTRVSDLELINE--QDDALLLTASSDGVIRIWKDYADKWKKPELVT---------- 1152 (1387)
T ss_pred eEEEEecccCce--eccccCCCCCCCccceeeeecc--cchhheeeeccCceEEEecccccccCCceeEE----------
Confidence 578999766542 43332 33567888888652 367799999999999999865431 111000
Q ss_pred ecccccc-ccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643 79 GIEPDGF-LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS 157 (279)
Q Consensus 79 ~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (279)
....+.. +.+-.+.=.-+.|..... +|+++|.-..|+|||..... ...........
T Consensus 1153 aw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~---~~~diP~~s~t------------------ 1209 (1387)
T KOG1517|consen 1153 AWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQ---VVADIPYGSST------------------ 1209 (1387)
T ss_pred eeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccce---eEeecccCCCc------------------
Confidence 0111111 112222224567877665 77777778999999976431 11111111110
Q ss_pred CCCCceeEEEc-CCCCeEEEecCCCeEEEEecCCCc---EEEEeecCCcc--eEEEEEcCCCc-EEEEecCCCeEEEEeC
Q 023643 158 PVPENNAIAVD-PQGGAIFSAAGDSCAYCWDVESSR---IKMVFKGHSDY--LHCIVARNSTN-QIVTGSEDGTARIWDC 230 (279)
Q Consensus 158 ~~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~--i~~i~~~~~~~-~l~~~~~d~~i~vwd~ 230 (279)
.++++.-+ +.|+.+++|..||.|++||.+... .+...+.|+.. |..+.+.+.|- .|++|+.||.|++||+
T Consensus 1210 ---~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~Dl 1286 (1387)
T KOG1517|consen 1210 ---LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDL 1286 (1387)
T ss_pred ---cceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEec
Confidence 14555544 346899999999999999998653 56677788877 99999988764 4999999999999999
Q ss_pred CCCceEEEecCCccccccCcc---eeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 231 KSGKCIKVIDPVKDKQLKGVI---SCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
|.......+.. ..|. +.++++..+++...+|+|+. +.|.||+
T Consensus 1287 R~~~~e~~~~i------v~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1287 RMSSKETFLTI------VAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYS 1331 (1387)
T ss_pred ccCccccccee------eeccccCccceeeeeccCCCeeeecCc-ceEEEEe
Confidence 97522222211 2222 25899999999999999998 9999996
No 205
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.3e-15 Score=106.74 Aligned_cols=220 Identities=13% Similarity=0.170 Sum_probs=143.1
Q ss_pred CCceeeeccccc--------cccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcc
Q 023643 2 CGDSTNWDEDAY--------RKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSK 73 (279)
Q Consensus 2 dG~v~iw~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 73 (279)
+|+|-+..++.. ....+.....|.++|+.++|.. .+|++|+. |.|+=|.-+........
T Consensus 31 ~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d------~~Lls~gd-G~V~gw~W~E~~es~~~------ 97 (325)
T KOG0649|consen 31 FGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD------DFLLSGGD-GLVYGWEWNEEEESLAT------ 97 (325)
T ss_pred CCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh------hheeeccC-ceEEEeeehhhhhhccc------
Confidence 577777765421 1223445678999999999986 56667654 99999987754321100
Q ss_pred cceeee-ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCc
Q 023643 74 VQQLLG-IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGP 152 (279)
Q Consensus 74 ~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (279)
...+. ..|.+.-...-..|+++...|..+ -+++++.|+.++-||++++ .....+.++..
T Consensus 98 -K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G---~i~r~~rGHtD-------------- 157 (325)
T KOG0649|consen 98 -KRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDG---RIQREYRGHTD-------------- 157 (325)
T ss_pred -hhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCC---EEEEEEcCCcc--------------
Confidence 00000 111111011234689999999887 7777779999999998754 44555555432
Q ss_pred cccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecC----------CcceEEEEEcCCCcEEEEecCC
Q 023643 153 WGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGH----------SDYLHCIVARNSTNQIVTGSED 222 (279)
Q Consensus 153 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~----------~~~i~~i~~~~~~~~l~~~~~d 222 (279)
.+.++.--.....+++|+.||++++||+++++.+..+... ..+|.+++. +..+++.|+ .
T Consensus 158 --------YvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-G 226 (325)
T KOG0649|consen 158 --------YVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-G 226 (325)
T ss_pred --------eeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-C
Confidence 2567766444567999999999999999999988876532 124555554 467887765 5
Q ss_pred CeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEE
Q 023643 223 GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVI 276 (279)
Q Consensus 223 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 276 (279)
..+.+|.+++.++...++. . ..+..+.|.. ..+++++..+.|.
T Consensus 227 p~lslwhLrsse~t~vfpi------p---a~v~~v~F~~--d~vl~~G~g~~v~ 269 (325)
T KOG0649|consen 227 PKLSLWHLRSSESTCVFPI------P---ARVHLVDFVD--DCVLIGGEGNHVQ 269 (325)
T ss_pred CceeEEeccCCCceEEEec------c---cceeEeeeec--ceEEEecccccee
Confidence 5699999999999888843 2 3466667753 3455555444443
No 206
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.75 E-value=4.5e-16 Score=111.21 Aligned_cols=156 Identities=18% Similarity=0.258 Sum_probs=110.1
Q ss_pred EEEEECCCCCCCCCEEEEecC----------CCcEEEEeCCCCCcccccccCCcccceeeeccccccccC-CccCeEEEE
Q 023643 29 FRTVWGPSKDGSPDTIVIASS----------DGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHG-HDGPAYDVK 97 (279)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~ 97 (279)
..+.|+| +|++|++-.. -|...+|.++.. ..+...+.- ..++|.+++
T Consensus 9 ~~~~W~~----~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~------------------~~~~~~i~l~~~~~I~~~~ 66 (194)
T PF08662_consen 9 AKLHWQP----SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEK------------------NIPVESIELKKEGPIHDVA 66 (194)
T ss_pred EEEEecc----cCCEEEEEEEEeeccCcceEEeeEEEEEEecC------------------CCccceeeccCCCceEEEE
Confidence 4678999 7877766433 134556655432 233333432 456799999
Q ss_pred ecCCCCceEEE--EeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEE
Q 023643 98 FYGGNEDALLL--SCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF 175 (279)
Q Consensus 98 ~~~~~~~~~l~--s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 175 (279)
|+|+++ .|+ .|..++.|.+||++ ...+..+... .++.+.|+|+|++++
T Consensus 67 WsP~g~--~favi~g~~~~~v~lyd~~----~~~i~~~~~~------------------------~~n~i~wsP~G~~l~ 116 (194)
T PF08662_consen 67 WSPNGN--EFAVIYGSMPAKVTLYDVK----GKKIFSFGTQ------------------------PRNTISWSPDGRFLV 116 (194)
T ss_pred ECcCCC--EEEEEEccCCcccEEEcCc----ccEeEeecCC------------------------CceEEEECCCCCEEE
Confidence 999998 554 34567899999974 2222222211 257899999999999
Q ss_pred EecC---CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC------CCeEEEEeCCCCceEEEe
Q 023643 176 SAAG---DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE------DGTARIWDCKSGKCIKVI 239 (279)
Q Consensus 176 ~~~~---d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------d~~i~vwd~~~~~~~~~~ 239 (279)
+++. .|.|.+||.++.+.+..++ |. .+..++|+|+|++|+++.. |+.++||+. .|+.+...
T Consensus 117 ~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 117 LAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred EEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 8864 4679999999888888775 33 4689999999999998874 788999997 57777665
No 207
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.75 E-value=1e-17 Score=127.15 Aligned_cols=210 Identities=11% Similarity=0.126 Sum_probs=155.5
Q ss_pred cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccc-------e-----------eee--cccccc
Q 023643 26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQ-------Q-----------LLG--IEPDGF 85 (279)
Q Consensus 26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-------~-----------~~~--~~~~~~ 85 (279)
-.-+.+.|+. +|..|+.|+.-|.|-.+|..++.....+.....-.+ + +.. +..++-
T Consensus 130 FGPY~~~ytr----nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHC 205 (545)
T KOG1272|consen 130 FGPYHLDYTR----NGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHC 205 (545)
T ss_pred cCCeeeeecC----CccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEee
Confidence 3456788888 999999999999999999988654432211111000 0 000 444455
Q ss_pred ccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeE
Q 023643 86 LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAI 165 (279)
Q Consensus 86 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 165 (279)
++.| .+|..+.|.|..- +|++++..|.++--|+..+.....+..-.+ .+..+
T Consensus 206 lk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G-------------------------~~~vm 257 (545)
T KOG1272|consen 206 LKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAG-------------------------RTDVM 257 (545)
T ss_pred hhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCC-------------------------ccchh
Confidence 5544 3588999999986 889999999999999875432222211111 25677
Q ss_pred EEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccc
Q 023643 166 AVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDK 245 (279)
Q Consensus 166 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 245 (279)
.-+|-+..+-+|...|+|.+|...+.+++..+..|.++|.++++.++|+|++|.+.|..++|||++.-..+.++..
T Consensus 258 ~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t---- 333 (545)
T KOG1272|consen 258 KQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT---- 333 (545)
T ss_pred hcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec----
Confidence 8889888999999999999999999999999999999999999999999999999999999999998877776632
Q ss_pred cccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 246 QLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 246 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
..+...++||..| +++.+....|.+|
T Consensus 334 -----p~~a~~ls~Sqkg--lLA~~~G~~v~iw 359 (545)
T KOG1272|consen 334 -----PHPASNLSLSQKG--LLALSYGDHVQIW 359 (545)
T ss_pred -----CCCcccccccccc--ceeeecCCeeeee
Confidence 2356778888655 4444455567777
No 208
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=4.5e-15 Score=109.83 Aligned_cols=156 Identities=12% Similarity=0.135 Sum_probs=116.4
Q ss_pred ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccccccc---CCccCeEEEEecCC
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLH---GHDGPAYDVKFYGG 101 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~ 101 (279)
..+|.++.++. ++|++.-.+ .|.|||++++ +.++++. .+...+.++++++.
T Consensus 87 pt~IL~VrmNr------~RLvV~Lee-~IyIydI~~M-------------------klLhTI~t~~~n~~gl~AlS~n~~ 140 (391)
T KOG2110|consen 87 PTSILAVRMNR------KRLVVCLEE-SIYIYDIKDM-------------------KLLHTIETTPPNPKGLCALSPNNA 140 (391)
T ss_pred CCceEEEEEcc------ceEEEEEcc-cEEEEecccc-------------------eeehhhhccCCCccceEeeccCCC
Confidence 46788888876 566665554 4999999985 4444443 35555666666666
Q ss_pred CCceEEEEe--eCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC
Q 023643 102 NEDALLLSC--GDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG 179 (279)
Q Consensus 102 ~~~~~l~s~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 179 (279)
+. +++-- -..|.|.+||+.+.+... .+.. |. +.+-+++|+++|.+||+++.
T Consensus 141 n~--ylAyp~s~t~GdV~l~d~~nl~~v~---~I~a-H~---------------------~~lAalafs~~G~llATASe 193 (391)
T KOG2110|consen 141 NC--YLAYPGSTTSGDVVLFDTINLQPVN---TINA-HK---------------------GPLAALAFSPDGTLLATASE 193 (391)
T ss_pred Cc--eEEecCCCCCceEEEEEcccceeee---EEEe-cC---------------------CceeEEEECCCCCEEEEecc
Confidence 55 77643 336899999976532222 2221 21 23789999999999999999
Q ss_pred CCe-EEEEecCCCcEEEEeecC--CcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC
Q 023643 180 DSC-AYCWDVESSRIKMVFKGH--SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG 233 (279)
Q Consensus 180 d~~-i~i~d~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~ 233 (279)
.|+ ||++.+.+|+.+.+|+.. ...|.+++|+|++.+|++.|..++|.||.+...
T Consensus 194 KGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 194 KGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 997 699999999999999743 356889999999999999999999999998653
No 209
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=6.9e-17 Score=121.11 Aligned_cols=186 Identities=14% Similarity=0.106 Sum_probs=131.7
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||++|+|+.... ..+.....|..+|.++.|+| |+.+|++-+.| ..+||+.+++
T Consensus 164 ~dg~lRv~~~Ps~--~t~l~e~~~~~eV~DL~FS~----dgk~lasig~d-~~~VW~~~~g------------------- 217 (398)
T KOG0771|consen 164 TDGTLRVWEWPSM--LTILEEIAHHAEVKDLDFSP----DGKFLASIGAD-SARVWSVNTG------------------- 217 (398)
T ss_pred ccceEEEEecCcc--hhhhhhHhhcCccccceeCC----CCcEEEEecCC-ceEEEEeccC-------------------
Confidence 4899999994443 33445667889999999999 99999999999 9999999984
Q ss_pred ccccccc--CCccCeEEEEecCCCCc--e-EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcccc
Q 023643 81 EPDGFLH--GHDGPAYDVKFYGGNED--A-LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGA 155 (279)
Q Consensus 81 ~~~~~~~--~h~~~v~~~~~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (279)
.++.... ........+.|+.++.+ - .++....-+.|+.|++...... ....... .
T Consensus 218 ~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~-------------------~ 277 (398)
T KOG0771|consen 218 AALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRK-------------------K 277 (398)
T ss_pred chhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhh-------------------h
Confidence 2222222 12233555667665511 1 2333444567777776432221 1111000 0
Q ss_pred CCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEe-ecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC
Q 023643 156 LSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVF-KGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS 232 (279)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~ 232 (279)
......|++++.+++|++++.|+.||.|-+++..+-+.++.. +.|...|+.+.|+|+.+++++.+.|....|..+.-
T Consensus 278 ~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 278 IKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred hhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 011123899999999999999999999999999887776655 46999999999999999999999999988887654
No 210
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=6.7e-16 Score=125.64 Aligned_cols=238 Identities=14% Similarity=0.161 Sum_probs=160.0
Q ss_pred CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccc--------
Q 023643 3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKV-------- 74 (279)
Q Consensus 3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-------- 74 (279)
-.|+||...++ .++..+..|..++..+.+.|... .-.++.+.+.||.|++||.........+...-...
T Consensus 37 ~~V~VyS~~Tg--~~i~~l~~~~a~l~s~~~~~~~~-~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~ 113 (792)
T KOG1963|consen 37 NFVKVYSTATG--ECITSLEDHTAPLTSVIVLPSSE-NANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQ 113 (792)
T ss_pred CEEEEEecchH--hhhhhcccccCccceeeecCCCc-cceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhH
Confidence 46788887777 45778999999999999998411 12567799999999999998765444221111100
Q ss_pred -------------ceeee-------------------ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecC
Q 023643 75 -------------QQLLG-------------------IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWK 122 (279)
Q Consensus 75 -------------~~~~~-------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 122 (279)
...+. ......+.+|.. -.++.+++.+. +...-.+..+.+|...
T Consensus 114 a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge---~~~i~~~~~~~~~~v~ 189 (792)
T KOG1963|consen 114 ADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGE---FKGIVHMCKIHIYFVP 189 (792)
T ss_pred hCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCce---EEEEEEeeeEEEEEec
Confidence 00000 011111112222 24566666664 3333345567777764
Q ss_pred CCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCC----CcEEEEee
Q 023643 123 EFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVES----SRIKMVFK 198 (279)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~----~~~~~~~~ 198 (279)
.............+|. ..+++.+++|+++++++|..||.|.+|.--. ....+.+.
T Consensus 190 ~~~~~~~~~~~~~~Ht---------------------f~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH 248 (792)
T KOG1963|consen 190 KHTKHTSSRDITVHHT---------------------FNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLH 248 (792)
T ss_pred ccceeeccchhhhhhc---------------------ccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEE
Confidence 3221111111111111 1258999999999999999999999997432 12345566
Q ss_pred cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643 199 GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL 277 (279)
Q Consensus 199 ~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 277 (279)
=|...|.+++|+++|.+|++|+.++.+.+|.+.+++ +++- ..-.++|..+.++||+.+.+...+|+.|.+
T Consensus 249 WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfL-------PRLgs~I~~i~vS~ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 249 WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFL-------PRLGSPILHIVVSPDSDLYSLVLEDNQIHL 318 (792)
T ss_pred ecccccceeEEecCCceEeecccceEEEEEeecCCC--cccc-------cccCCeeEEEEEcCCCCeEEEEecCceEEE
Confidence 789999999999999999999999999999999987 3332 455678999999999999999999998875
No 211
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=1.7e-16 Score=128.03 Aligned_cols=195 Identities=12% Similarity=0.119 Sum_probs=131.1
Q ss_pred CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEec-CCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS-SDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
..|++||+++.....+..+.+| ...++|+| |++.|+.++ .+|.+.||.++.. ..
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSP----DG~~La~~~~~~g~~~Iy~~d~~------------------~~ 282 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGH---NGAPAFSP----DGSRLAFASSKDGVLNIYVMGAN------------------GG 282 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCc---cCceeECC----CCCEEEEEEecCCcEEEEEEECC------------------CC
Confidence 3588999887654444444443 34689999 899888764 6887766644321 11
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEE-eeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLS-CGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
....+..+...+....|+|+++ .|+. +..+|..+||+++........ . ...
T Consensus 283 ~~~~lt~~~~~~~~~~wSpDG~--~i~f~s~~~g~~~I~~~~~~~~~~~~--l-~~~----------------------- 334 (429)
T PRK01742 283 TPSQLTSGAGNNTEPSWSPDGQ--SILFTSDRSGSPQVYRMSASGGGASL--V-GGR----------------------- 334 (429)
T ss_pred CeEeeccCCCCcCCEEECCCCC--EEEEEECCCCCceEEEEECCCCCeEE--e-cCC-----------------------
Confidence 1233445666678899999998 6554 446788999987532211111 0 000
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeC--CCCceEEE
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDC--KSGKCIKV 238 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~--~~~~~~~~ 238 (279)
. ....|+|+++.++.++.++ +.+||+.+++.......+ ....+.|+|+|++|+.++.++.+.+|++ .+|+....
T Consensus 335 ~-~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~ 410 (429)
T PRK01742 335 G-YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR 410 (429)
T ss_pred C-CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence 0 2457999999998887765 556999888765433222 2356789999999999999998888875 35777777
Q ss_pred ecCCccccccCcceeeeEEEEcCC
Q 023643 239 IDPVKDKQLKGVISCVSCITLDAS 262 (279)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~~~~ 262 (279)
+ ..|...+..++|+|-
T Consensus 411 l--------~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 411 L--------PGSDGQVKFPAWSPY 426 (429)
T ss_pred c--------cCCCCCCCCcccCCC
Confidence 7 566677888999984
No 212
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=7.9e-17 Score=120.23 Aligned_cols=209 Identities=11% Similarity=0.062 Sum_probs=144.4
Q ss_pred ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccC-CccCeEE
Q 023643 17 ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHG-HDGPAYD 95 (279)
Q Consensus 17 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~ 95 (279)
+.+.+.+|.+.|.++.|+. ++++||+|+.|..+++|++........ .+++..... |...|.|
T Consensus 48 ~qKD~~~H~GCiNAlqFS~----N~~~L~SGGDD~~~~~W~~de~~~~k~-------------~KPI~~~~~~H~SNIF~ 110 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSH----NDRFLASGGDDMHGRVWNVDELMVRKT-------------PKPIGVMEHPHRSNIFS 110 (609)
T ss_pred hhhhhhhhccccceeeecc----CCeEEeecCCcceeeeechHHHHhhcC-------------CCCceeccCccccceEE
Confidence 3456778999999999999 899999999999999999875211111 355555543 6689999
Q ss_pred EEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEE
Q 023643 96 VKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF 175 (279)
Q Consensus 96 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 175 (279)
+.|..... ++.+|+.+++|.+.|+++.+ .+.....+ .. .+.|..+..+|..+.|+
T Consensus 111 L~F~~~N~--~~~SG~~~~~VI~HDiEt~q---si~V~~~~-----------~~---------~~~VY~m~~~P~DN~~~ 165 (609)
T KOG4227|consen 111 LEFDLENR--FLYSGERWGTVIKHDIETKQ---SIYVANEN-----------NN---------RGDVYHMDQHPTDNTLI 165 (609)
T ss_pred EEEccCCe--eEecCCCcceeEeeecccce---eeeeeccc-----------Cc---------ccceeecccCCCCceEE
Confidence 99998877 99999999999999986532 11111110 00 11378899999999999
Q ss_pred EecCCCeEEEEecCCCc-EEEEe--ecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCce-EEEecCCccccccCc
Q 023643 176 SAAGDSCAYCWDVESSR-IKMVF--KGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKC-IKVIDPVKDKQLKGV 250 (279)
Q Consensus 176 ~~~~d~~i~i~d~~~~~-~~~~~--~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~ 250 (279)
+.+.++.|.+||.+... +...+ .........+.|+|. ..+|++.+..+-+-+||.+..+. +...... ..+...
T Consensus 166 ~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~--~~L~~~ 243 (609)
T KOG4227|consen 166 VVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMF--KGLPQE 243 (609)
T ss_pred EEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhcc--ccCccc
Confidence 99999999999998654 22222 223455678889995 67899999999999999875431 1111100 001111
Q ss_pred ceeeeEEEEcCCCCEEEEE
Q 023643 251 ISCVSCITLDASESWLVRV 269 (279)
Q Consensus 251 ~~~v~~~~~~~~~~~l~~~ 269 (279)
...-.++.|+|+|..|++-
T Consensus 244 ~~~~M~~~~~~~G~Q~msi 262 (609)
T KOG4227|consen 244 NTEWMGSLWSPSGNQFMSI 262 (609)
T ss_pred chhhhheeeCCCCCeehhh
Confidence 1122456788887666543
No 213
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=4.2e-17 Score=127.52 Aligned_cols=110 Identities=14% Similarity=0.185 Sum_probs=97.8
Q ss_pred CCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC-CceEEE
Q 023643 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS-GKCIKV 238 (279)
Q Consensus 160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~ 238 (279)
+.|.++.|+|...+|++++. ..|++||+..++.+..+......|..|+.+|.|..|+.|+.|+.+..||+.- .++.++
T Consensus 567 G~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~ 645 (733)
T KOG0650|consen 567 GLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKT 645 (733)
T ss_pred CceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHH
Confidence 45778999999999988875 7799999998888888887888999999999999999999999999999975 456666
Q ss_pred ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
+ ..|...+++++|++.-.++++|+.||++.||
T Consensus 646 l--------r~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 646 L--------RLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred h--------hhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 6 6888999999999999999999999999886
No 214
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=1.8e-15 Score=122.23 Aligned_cols=203 Identities=13% Similarity=0.152 Sum_probs=130.0
Q ss_pred ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCC---CcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSD---GSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.|.+||.++.. .+.+..+...+...+|+| +++.|+..+.+ ..|.+|++.++.
T Consensus 185 ~l~i~D~~g~~---~~~lt~~~~~v~~p~wSp----Dg~~la~~s~~~~~~~l~~~dl~~g~------------------ 239 (433)
T PRK04922 185 ALQVADSDGYN---PQTILRSAEPILSPAWSP----DGKKLAYVSFERGRSAIYVQDLATGQ------------------ 239 (433)
T ss_pred EEEEECCCCCC---ceEeecCCCccccccCCC----CCCEEEEEecCCCCcEEEEEECCCCC------------------
Confidence 57888877643 233445667899999999 89998887633 469999998632
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCC--cEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDG--RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP 158 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (279)
. ..+....+...++.|+|+++ .++++.+.+| .|++||+..... ..+..+..
T Consensus 240 -~-~~l~~~~g~~~~~~~SpDG~-~l~~~~s~~g~~~Iy~~d~~~g~~----~~lt~~~~-------------------- 292 (433)
T PRK04922 240 -R-ELVASFRGINGAPSFSPDGR-RLALTLSRDGNPEIYVMDLGSRQL----TRLTNHFG-------------------- 292 (433)
T ss_pred -E-EEeccCCCCccCceECCCCC-EEEEEEeCCCCceEEEEECCCCCe----EECccCCC--------------------
Confidence 1 11222233445789999998 2334556666 588888754311 11111100
Q ss_pred CCCceeEEEcCCCCeEEEecC-CC--eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCC---eEEEEeCCC
Q 023643 159 VPENNAIAVDPQGGAIFSAAG-DS--CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG---TARIWDCKS 232 (279)
Q Consensus 159 ~~~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i~vwd~~~ 232 (279)
.....+|+|+++.|+..+. ++ .|+++|+.+++..+.. .+.......+|+|+|++|+..+.++ .|.+||+.+
T Consensus 293 --~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~ 369 (433)
T PRK04922 293 --IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST 369 (433)
T ss_pred --CccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC
Confidence 1356799999998876653 34 4777787776644322 2333445789999999988765433 699999988
Q ss_pred CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643 233 GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA 271 (279)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 271 (279)
++.. .+. .+ .......|+|||++|+..+.
T Consensus 370 g~~~-~Lt-------~~--~~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 370 GSVR-TLT-------PG--SLDESPSFAPNGSMVLYATR 398 (433)
T ss_pred CCeE-ECC-------CC--CCCCCceECCCCCEEEEEEe
Confidence 7755 332 11 12345689999998876654
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=1.5e-14 Score=105.17 Aligned_cols=178 Identities=15% Similarity=0.192 Sum_probs=123.5
Q ss_pred CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccc
Q 023643 3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEP 82 (279)
Q Consensus 3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (279)
..|-|||-... .++.++. ...+|.++.+.+ ++|++.- .+.|.||...+. .+.
T Consensus 75 NkviIWDD~k~--~~i~el~-f~~~I~~V~l~r------~riVvvl-~~~I~VytF~~n------------------~k~ 126 (346)
T KOG2111|consen 75 NKVIIWDDLKE--RCIIELS-FNSEIKAVKLRR------DRIVVVL-ENKIYVYTFPDN------------------PKL 126 (346)
T ss_pred ceEEEEecccC--cEEEEEE-eccceeeEEEcC------CeEEEEe-cCeEEEEEcCCC------------------hhh
Confidence 35789992222 3344454 568999999988 5666654 458999999853 233
Q ss_pred cccccCC--ccCeEEEEecCCCCceEEEEee-CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643 83 DGFLHGH--DGPAYDVKFYGGNEDALLLSCG-DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV 159 (279)
Q Consensus 83 ~~~~~~h--~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (279)
++.+..- ...+.+ .+|.....+|+.-| .-|.|+|-|+...... .+....+|.
T Consensus 127 l~~~et~~NPkGlC~--~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~-----------------------~p~~I~AH~ 181 (346)
T KOG2111|consen 127 LHVIETRSNPKGLCS--LCPTSNKSLLAFPGFKTGQVQIVDLASTKPN-----------------------APSIINAHD 181 (346)
T ss_pred eeeeecccCCCceEe--ecCCCCceEEEcCCCccceEEEEEhhhcCcC-----------------------CceEEEccc
Confidence 3333221 222333 33333222555433 4688999998643221 112223334
Q ss_pred CCceeEEEcCCCCeEEEecCCCe-EEEEecCCCcEEEEeec--CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC
Q 023643 160 PENNAIAVDPQGGAIFSAAGDSC-AYCWDVESSRIKMVFKG--HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG 233 (279)
Q Consensus 160 ~~i~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~ 233 (279)
..|.|++++.+|..+|+++..|+ |+|||..+|+++.+++. ....|+||+|+|+..+|+++|..|+|.||.++..
T Consensus 182 s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 182 SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 45899999999999999999997 79999999999999874 3467999999999999999999999999998763
No 216
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=4.8e-15 Score=119.38 Aligned_cols=205 Identities=8% Similarity=0.064 Sum_probs=130.9
Q ss_pred ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEec---CCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS---SDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.|.+||.++... +.+..+...+...+|+| ||+.|+..+ .+..|.+|++.+++ .
T Consensus 180 ~l~~~d~dg~~~---~~lt~~~~~~~~p~wSP----DG~~la~~s~~~g~~~i~i~dl~~G~-----------------~ 235 (429)
T PRK03629 180 ELRVSDYDGYNQ---FVVHRSPQPLMSPAWSP----DGSKLAYVTFESGRSALVIQTLANGA-----------------V 235 (429)
T ss_pred eEEEEcCCCCCC---EEeecCCCceeeeEEcC----CCCEEEEEEecCCCcEEEEEECCCCC-----------------e
Confidence 577888777543 22333557899999999 899888654 34578999988632 1
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEE-eeCCC--cEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLS-CGDDG--RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS 157 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (279)
+.+..+.++ +..+.|+|+++ .|+. .+.+| .|.+||++.... ..+....
T Consensus 236 ~~l~~~~~~---~~~~~~SPDG~--~La~~~~~~g~~~I~~~d~~tg~~----~~lt~~~-------------------- 286 (429)
T PRK03629 236 RQVASFPRH---NGAPAFSPDGS--KLAFALSKTGSLNLYVMDLASGQI----RQVTDGR-------------------- 286 (429)
T ss_pred EEccCCCCC---cCCeEECCCCC--EEEEEEcCCCCcEEEEEECCCCCE----EEccCCC--------------------
Confidence 222333333 44689999998 6654 35455 488888754211 1111100
Q ss_pred CCCCceeEEEcCCCCeEEEecCC-C--eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC---CeEEEEeCC
Q 023643 158 PVPENNAIAVDPQGGAIFSAAGD-S--CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED---GTARIWDCK 231 (279)
Q Consensus 158 ~~~~i~~~~~~~~~~~l~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i~vwd~~ 231 (279)
..+....|+|+++.|+..+.+ + .|+++|+.+++.. .+..+........|+|+|++|+..+.+ ..|.+||+.
T Consensus 287 --~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~ 363 (429)
T PRK03629 287 --SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA 363 (429)
T ss_pred --CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECC
Confidence 014678999999988766643 3 4566677766543 333344455678899999998776543 358899998
Q ss_pred CCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcce
Q 023643 232 SGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNY 274 (279)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 274 (279)
+++.. .+.. .. ......|+|||++|+.++.++.
T Consensus 364 ~g~~~-~Lt~-------~~--~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 364 TGGVQ-VLTD-------TF--LDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred CCCeE-EeCC-------CC--CCCCceECCCCCEEEEEEcCCC
Confidence 87644 3321 11 1245789999999998887754
No 217
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3.6e-15 Score=111.52 Aligned_cols=251 Identities=12% Similarity=0.094 Sum_probs=162.4
Q ss_pred CCceeeecccccc----cccee-eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccce
Q 023643 2 CGDSTNWDEDAYR----KSILK-EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQ 76 (279)
Q Consensus 2 dG~v~iw~~~~~~----~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 76 (279)
|..+++|+++..- .+.+. .-..|...|.|++|.. ....+.+|..+++|.+-|+++.
T Consensus 77 D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~----~N~~~~SG~~~~~VI~HDiEt~--------------- 137 (609)
T KOG4227|consen 77 DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL----ENRFLYSGERWGTVIKHDIETK--------------- 137 (609)
T ss_pred cceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc----CCeeEecCCCcceeEeeecccc---------------
Confidence 4578999966421 12222 2235678999999999 7889999999999999999983
Q ss_pred eeecccccccc--CCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEE-----------
Q 023643 77 LLGIEPDGFLH--GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLD----------- 143 (279)
Q Consensus 77 ~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~----------- 143 (279)
+.+..+. ...+.|+.+..+|..+ .|++.+.++.|.+||.+..+......-+.. ..+.++.
T Consensus 138 ----qsi~V~~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN-~~~~F~t~~F~P~~P~Li 210 (609)
T KOG4227|consen 138 ----QSIYVANENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPAN-SGKNFYTAEFHPETPALI 210 (609)
T ss_pred ----eeeeeecccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecC-CCccceeeeecCCCceeE
Confidence 3333332 2346899999999976 999999999999999987553332222211 1111111
Q ss_pred --eecCCCCCccccCCC----------------CCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcE-EEEeecC----
Q 023643 144 --LVNHQHKGPWGALSP----------------VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRI-KMVFKGH---- 200 (279)
Q Consensus 144 --~~~~~~~~~~~~~~~----------------~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~---- 200 (279)
.........|+...+ ...-.++.|+|.|..|++--....-.+||+.+.++ +..+...
T Consensus 211 ~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY 290 (609)
T KOG4227|consen 211 LVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGY 290 (609)
T ss_pred EeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcc
Confidence 111122222222111 11224677888888887766666667778766433 3333311
Q ss_pred --CcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE---e------------cCCccccccCcceeeeEEEEcCCC
Q 023643 201 --SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV---I------------DPVKDKQLKGVISCVSCITLDASE 263 (279)
Q Consensus 201 --~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~---~------------~~~~~~~~~~~~~~v~~~~~~~~~ 263 (279)
...+.+++|..+ ..+++|+.+-.|++|.+.......- + -...-..+++|..-+..+.|+|..
T Consensus 291 ~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~ 369 (609)
T KOG4227|consen 291 CNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHN 369 (609)
T ss_pred eeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCc
Confidence 124667777654 4599999999999998853211110 0 000112358999999999999999
Q ss_pred CEEEEEcCcceEEeCC
Q 023643 264 SWLVRVRATNYVILFS 279 (279)
Q Consensus 264 ~~l~~~~~d~~i~~wd 279 (279)
.+|++.+..+.+++|+
T Consensus 370 ~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 370 NLLVSSGVENSFKLWS 385 (609)
T ss_pred ceEeccchhhheeccc
Confidence 9999999999999995
No 218
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=5.8e-15 Score=119.49 Aligned_cols=203 Identities=12% Similarity=0.118 Sum_probs=132.9
Q ss_pred ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecC---CCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASS---DGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.|.++|.++.. .+.+..|...+...+|+| |++.|+..+. +..|.+||+.++.
T Consensus 183 ~l~~~d~dg~~---~~~lt~~~~~v~~p~wSp----DG~~lay~s~~~g~~~i~~~dl~~g~------------------ 237 (435)
T PRK05137 183 RLAIMDQDGAN---VRYLTDGSSLVLTPRFSP----NRQEITYMSYANGRPRVYLLDLETGQ------------------ 237 (435)
T ss_pred EEEEECCCCCC---cEEEecCCCCeEeeEECC----CCCEEEEEEecCCCCEEEEEECCCCc------------------
Confidence 56777877643 344556778899999999 8998887653 4689999998732
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCc--EEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGR--ICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP 158 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (279)
. ..+..+.+.+....|+|+++ .++++.+.++. |.+||++... ...+..+.
T Consensus 238 -~-~~l~~~~g~~~~~~~SPDG~-~la~~~~~~g~~~Iy~~d~~~~~----~~~Lt~~~--------------------- 289 (435)
T PRK05137 238 -R-ELVGNFPGMTFAPRFSPDGR-KVVMSLSQGGNTDIYTMDLRSGT----TTRLTDSP--------------------- 289 (435)
T ss_pred -E-EEeecCCCcccCcEECCCCC-EEEEEEecCCCceEEEEECCCCc----eEEccCCC---------------------
Confidence 1 22334555677889999998 23456666666 5566664321 11111110
Q ss_pred CCCceeEEEcCCCCeEEEecC-C--CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC---CeEEEEeCCC
Q 023643 159 VPENNAIAVDPQGGAIFSAAG-D--SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED---GTARIWDCKS 232 (279)
Q Consensus 159 ~~~i~~~~~~~~~~~l~~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i~vwd~~~ 232 (279)
.......|+|+++.++..+. + ..|+++|+..++..+ +..+...+....|+|+|++|+..+.+ ..|.+||+..
T Consensus 290 -~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~ 367 (435)
T PRK05137 290 -AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG 367 (435)
T ss_pred -CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 01356799999998876653 2 368889987665544 33344556678899999998876543 3688889765
Q ss_pred CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643 233 GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA 271 (279)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 271 (279)
+. ...+. .+ ..+..+.|+|||+.|+..+.
T Consensus 368 ~~-~~~lt-------~~--~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 368 SG-ERILT-------SG--FLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred Cc-eEecc-------CC--CCCCCCeECCCCCEEEEEEc
Confidence 44 33332 11 23567899999998876544
No 219
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.71 E-value=4.9e-15 Score=124.87 Aligned_cols=240 Identities=12% Similarity=0.091 Sum_probs=155.8
Q ss_pred CCCceeeeccccccc-----cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccc
Q 023643 1 MCGDSTNWDEDAYRK-----SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQ 75 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 75 (279)
-||+||+||...... ....++......+.++.+.+ .++.+|+++.||.|++.+++..+.....
T Consensus 1069 ~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~----~~~~~Av~t~DG~v~~~~id~~~~~~~~-------- 1136 (1431)
T KOG1240|consen 1069 DDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG----NGDQFAVSTKDGSVRVLRIDHYNVSKRV-------- 1136 (1431)
T ss_pred CCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc----CCCeEEEEcCCCeEEEEEccccccccce--------
Confidence 389999999654321 12223444568899999999 8999999999999999999863211110
Q ss_pred eeeeccccccccCC-ccCeEE-EEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcc
Q 023643 76 QLLGIEPDGFLHGH-DGPAYD-VKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPW 153 (279)
Q Consensus 76 ~~~~~~~~~~~~~h-~~~v~~-~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (279)
....+....+ .+.+.+ -+|....+...++.+..-+.|..||++....... ......
T Consensus 1137 ----~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~-lk~~~~----------------- 1194 (1431)
T KOG1240|consen 1137 ----ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR-LKNQLR----------------- 1194 (1431)
T ss_pred ----eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh-hhcCcc-----------------
Confidence 1111122222 222333 3343333323788888889999999875321111 111111
Q ss_pred ccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee-cCCcceEEEEEcCC---CcEEEEe-c-CCCeEEE
Q 023643 154 GALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK-GHSDYLHCIVARNS---TNQIVTG-S-EDGTARI 227 (279)
Q Consensus 154 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~---~~~l~~~-~-~d~~i~v 227 (279)
.+.|++++.+|.++++++|+..|.+.+||++-+.++...+ .+..+++.+..+|- ....+++ + ..+.|.+
T Consensus 1195 -----hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1195 -----HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred -----ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence 1238999999999999999999999999999998888775 34578888887773 2454444 4 5788999
Q ss_pred EeCCCCceEEEecCCccc-cc----c------CcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 228 WDCKSGKCIKVIDPVKDK-QL----K------GVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 228 wd~~~~~~~~~~~~~~~~-~~----~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
|++.+|.+..++...... .+ . .+.......++..-+..+.+|+.|..|+.||
T Consensus 1270 wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred eecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 999999877776543110 00 0 1111222233444467899999999999998
No 220
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.1e-16 Score=124.29 Aligned_cols=173 Identities=22% Similarity=0.307 Sum_probs=128.2
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
.....+.||++.|+++.|+.+|. +|++||.|-.+.|||.- ..+....+...|...
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~---~~KllhsI~TgHtaN-------------------- 95 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPF---EYKLLHSISTGHTAN-------------------- 95 (758)
T ss_pred chhhhhccccceecceeecCCCC--EEeecCCcceEEeecch---hcceeeeeecccccc--------------------
Confidence 34467889999999999999998 99999999999999964 333344444444432
Q ss_pred CceeEEEcC--CCCeEEEecCCCeEEEEecCC----------CcEEEEeecCCcceEEEEEcCCC-cEEEEecCCCeEEE
Q 023643 161 ENNAIAVDP--QGGAIFSAAGDSCAYCWDVES----------SRIKMVFKGHSDYLHCIVARNST-NQIVTGSEDGTARI 227 (279)
Q Consensus 161 ~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~~----------~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~v 227 (279)
|.++.|-| +.+.+++|..|..|+++|+.. .+..+.+..|...|..++-.|++ +.+.++++||+|+-
T Consensus 96 -IFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQ 174 (758)
T KOG1310|consen 96 -IFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQ 174 (758)
T ss_pred -eeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceee
Confidence 68899988 455889999999999999984 24455667789999999999986 88999999999999
Q ss_pred EeCCCCceE-EEecCCc-cccccCcceeeeEEEEcCC-CCEEEEEcCcceEEeCC
Q 023643 228 WDCKSGKCI-KVIDPVK-DKQLKGVISCVSCITLDAS-ESWLVRVRATNYVILFS 279 (279)
Q Consensus 228 wd~~~~~~~-~~~~~~~-~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd 279 (279)
||++....- .....+. ...+....-...++..+|. ..+|+.|+.|-..++||
T Consensus 175 yDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD 229 (758)
T KOG1310|consen 175 YDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYD 229 (758)
T ss_pred ecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhh
Confidence 999863211 1110000 0001122245678899995 56889999999888886
No 221
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=7.9e-16 Score=117.68 Aligned_cols=250 Identities=17% Similarity=0.266 Sum_probs=172.3
Q ss_pred ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccccc-----------ccCCcccceeee------
Q 023643 17 ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPL-----------GLSNSKVQQLLG------ 79 (279)
Q Consensus 17 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-----------~~~~~~~~~~~~------ 79 (279)
+...+..|.+.|..+.|.. .|..|++|+.|..|.+||.........+ .+.+...+..+.
T Consensus 134 l~~kL~~H~GcVntV~FN~----~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg 209 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQ----RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDG 209 (559)
T ss_pred hhhcccCCCCccceeeecc----cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccC
Confidence 3456789999999999999 8999999999999999998765444311 111111111100
Q ss_pred ------------ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcc--cceEEee
Q 023643 80 ------------IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHV--KPVLDLV 145 (279)
Q Consensus 80 ------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--~~~~~~~ 145 (279)
.+....+..|.++|..++.-|... ..|.+++.|+.+.-+|++................ ..++.+.
T Consensus 210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp-~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia 288 (559)
T KOG1334|consen 210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP-KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA 288 (559)
T ss_pred ceeeeeeccccceecceecccccCccceeeecCCCC-CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence 122334556999999999999877 5899999999999999886533222221111111 0111110
Q ss_pred c---------------------------CCCCCccccC-------CCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCC
Q 023643 146 N---------------------------HQHKGPWGAL-------SPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS 191 (279)
Q Consensus 146 ~---------------------------~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 191 (279)
. ....++...+ .....|++++|+.++.-|.++.+|-.|+++.-..+
T Consensus 289 ~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~ 368 (559)
T KOG1334|consen 289 VDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMG 368 (559)
T ss_pred cCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccc
Confidence 0 0011111111 12346899999988888888888999999954322
Q ss_pred ------------cE-EEEeecCCc--ceEEEEE-cCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeee
Q 023643 192 ------------RI-KMVFKGHSD--YLHCIVA-RNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVS 255 (279)
Q Consensus 192 ------------~~-~~~~~~~~~--~i~~i~~-~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 255 (279)
.. .+.+++|.+ .|.++-| -|...|+++||.-|.|.||+-.+++.++.+. +-..-|+
T Consensus 369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me--------gDr~VVN 440 (559)
T KOG1334|consen 369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME--------GDRHVVN 440 (559)
T ss_pred cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh--------cccceEe
Confidence 11 233778864 4667755 4678999999999999999999999988884 4444899
Q ss_pred EEEEcCCCCEEEEEcCcceEEeCC
Q 023643 256 CITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 256 ~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
|+-=+|.-..||+.+-|.-|+||.
T Consensus 441 CLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 441 CLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred ccCCCCCCchhhccCCccceeeec
Confidence 999999999999999999999994
No 222
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=8e-15 Score=118.20 Aligned_cols=206 Identities=9% Similarity=0.094 Sum_probs=128.3
Q ss_pred ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCC---CcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSD---GSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.|.++|.++.. .+.+..+...+.+.+|+| +++.|+..+.+ ..|.+||+.++.
T Consensus 177 ~L~~~D~dG~~---~~~l~~~~~~v~~p~wSP----DG~~la~~s~~~~~~~I~~~dl~~g~------------------ 231 (427)
T PRK02889 177 QLQISDADGQN---AQSALSSPEPIISPAWSP----DGTKLAYVSFESKKPVVYVHDLATGR------------------ 231 (427)
T ss_pred EEEEECCCCCC---ceEeccCCCCcccceEcC----CCCEEEEEEccCCCcEEEEEECCCCC------------------
Confidence 45666765533 223345667899999999 89988876643 359999998742
Q ss_pred cccccccCCccCeEEEEecCCCCceEEE-EeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLL-SCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV 159 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (279)
.. .+....+.+....|+|+++ .|+ +.+.+|...||.++..... ...+..+.
T Consensus 232 -~~-~l~~~~g~~~~~~~SPDG~--~la~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~---------------------- 283 (427)
T PRK02889 232 -RR-VVANFKGSNSAPAWSPDGR--TLAVALSRDGNSQIYTVNADGSG--LRRLTQSS---------------------- 283 (427)
T ss_pred -EE-EeecCCCCccceEECCCCC--EEEEEEccCCCceEEEEECCCCC--cEECCCCC----------------------
Confidence 11 1222234456889999998 554 6778888788776422111 11111100
Q ss_pred CCceeEEEcCCCCeEEEecC-CCeEEEE--ecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCC---eEEEEeCCCC
Q 023643 160 PENNAIAVDPQGGAIFSAAG-DSCAYCW--DVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG---TARIWDCKSG 233 (279)
Q Consensus 160 ~~i~~~~~~~~~~~l~~~~~-d~~i~i~--d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i~vwd~~~~ 233 (279)
.......|+|||+.|+..+. ++...+| ++.+++..+. ..........+|+|+|++|+..+.++ .|.+||+.++
T Consensus 284 ~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-t~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 284 GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV-TFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE-ecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 01356789999998776553 4555555 5455543332 22223344678999999998776554 6999999887
Q ss_pred ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcc
Q 023643 234 KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATN 273 (279)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 273 (279)
+..... .. .......|+|||+.|+.++.++
T Consensus 363 ~~~~lt--------~~--~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 363 QVTALT--------DT--TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CeEEcc--------CC--CCccCceECCCCCEEEEEEecC
Confidence 654322 11 1235679999999888776543
No 223
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=4.6e-15 Score=120.86 Aligned_cols=202 Identities=16% Similarity=0.200 Sum_probs=152.8
Q ss_pred eecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCC
Q 023643 22 EILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGG 101 (279)
Q Consensus 22 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 101 (279)
..|...+++.+++| +++++|+|..||+|.+|.-...+.. ......+..|..+|++++|+++
T Consensus 202 ~~Htf~~t~~~~sp----n~~~~Aa~d~dGrI~vw~d~~~~~~---------------~~t~t~lHWH~~~V~~L~fS~~ 262 (792)
T KOG1963|consen 202 VHHTFNITCVALSP----NERYLAAGDSDGRILVWRDFGSSDD---------------SETCTLLHWHHDEVNSLSFSSD 262 (792)
T ss_pred hhhcccceeEEecc----ccceEEEeccCCcEEEEeccccccc---------------cccceEEEecccccceeEEecC
Confidence 45777799999999 9999999999999999975431000 2334567789999999999999
Q ss_pred CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCC
Q 023643 102 NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDS 181 (279)
Q Consensus 102 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 181 (279)
|. +|+|||..|.+.+|.+.+.. .+....+.. .|..+.++||+.+.++...|.
T Consensus 263 G~--~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs-------------------------~I~~i~vS~ds~~~sl~~~DN 314 (792)
T KOG1963|consen 263 GA--YLLSGGREGVLVLWQLETGK-KQFLPRLGS-------------------------PILHIVVSPDSDLYSLVLEDN 314 (792)
T ss_pred Cc--eEeecccceEEEEEeecCCC-cccccccCC-------------------------eeEEEEEcCCCCeEEEEecCc
Confidence 98 99999999999999987653 222222211 378999999999999999999
Q ss_pred eEEEEecCCCcEEEEeec-----------CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccc---
Q 023643 182 CAYCWDVESSRIKMVFKG-----------HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQL--- 247 (279)
Q Consensus 182 ~i~i~d~~~~~~~~~~~~-----------~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~--- 247 (279)
.|.+....+.+...++.+ ..+-.+.++++|..+.++-.+..|.|.+||+.+.+.+..+........
T Consensus 315 qI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~ 394 (792)
T KOG1963|consen 315 QIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGD 394 (792)
T ss_pred eEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCc
Confidence 999998866555444432 234467788999778888899999999999998777766543221100
Q ss_pred cCcceeeeEEEEcCCCCEEEEEc
Q 023643 248 KGVISCVSCITLDASESWLVRVR 270 (279)
Q Consensus 248 ~~~~~~v~~~~~~~~~~~l~~~~ 270 (279)
..+.-.+++++.+..|.+++|.-
T Consensus 395 ~n~~v~itav~~~~~gs~maT~E 417 (792)
T KOG1963|consen 395 VNIQVGITAVARSRFGSWMATLE 417 (792)
T ss_pred ceeEEeeeeehhhccceEEEEee
Confidence 13445788888888899999873
No 224
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.5e-14 Score=113.09 Aligned_cols=224 Identities=14% Similarity=0.165 Sum_probs=154.2
Q ss_pred cccceEEEEECCCCCCCCCEE-EEecCCCcEEEEeCCCCCccc----------------------------ccccCCc--
Q 023643 24 LTRTVFRTVWGPSKDGSPDTI-VIASSDGSITSYSIPSCISKL----------------------------PLGLSNS-- 72 (279)
Q Consensus 24 ~~~~v~~~~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~----------------------------~~~~~~~-- 72 (279)
++..-+.+..+| ||+++ |+|..--.|++||+....... .+.+...
T Consensus 50 ~p~ast~ik~s~----DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G 125 (703)
T KOG2321|consen 50 MPTASTRIKVSP----DGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG 125 (703)
T ss_pred CccccceeEecC----CCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC
Confidence 667788999999 88875 667788999999998643322 0000000
Q ss_pred -------------------ccceee-------------eccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEee
Q 023643 73 -------------------KVQQLL-------------GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWR 120 (279)
Q Consensus 73 -------------------~~~~~~-------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~ 120 (279)
.-+-++ .++.+..+....+.++++..++... +|++|+.+|.|..||
T Consensus 126 ~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg--Lla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 126 RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHG--LLACGTEDGVVEFWD 203 (703)
T ss_pred eeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccc--eEEecccCceEEEec
Confidence 000000 0444455555567899999999887 999999999999999
Q ss_pred cCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee-c
Q 023643 121 WKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK-G 199 (279)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~ 199 (279)
.++......+..... +. .. ........|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-. +
T Consensus 204 pR~ksrv~~l~~~~~-----v~-------s~--pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~ 269 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASS-----VN-------SH--PGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHG 269 (703)
T ss_pred chhhhhheeeecccc-----cC-------CC--ccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccC
Confidence 876422211111000 00 00 000111248999999999999999999999999999988877543 3
Q ss_pred CCcceEEEEEcCC--CcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643 200 HSDYLHCIVARNS--TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL 277 (279)
Q Consensus 200 ~~~~i~~i~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 277 (279)
..-+|..+.|.+. ++.+++ .....++|||-.+|+....+.+ ...+..+|+-|++-.++++-.++.+..
T Consensus 270 ~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEp---------t~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 270 YELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEP---------TSDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred CccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccc---------cCCcCceeeecCCceEEEecCCCccee
Confidence 3467889999775 444554 4567799999999999988853 345889999999999999987766543
No 225
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.65 E-value=9.6e-16 Score=116.57 Aligned_cols=207 Identities=15% Similarity=0.089 Sum_probs=151.0
Q ss_pred ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccc
Q 023643 4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPD 83 (279)
Q Consensus 4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (279)
.+.|||-++....+++.. .+|..+.|-| ..-+|++++..|.++--|+.+ ++.+
T Consensus 192 y~yvYD~~GtElHClk~~----~~v~rLeFLP----yHfLL~~~~~~G~L~Y~DVS~-------------------GklV 244 (545)
T KOG1272|consen 192 YVYVYDNNGTELHCLKRH----IRVARLEFLP----YHFLLVAASEAGFLKYQDVST-------------------GKLV 244 (545)
T ss_pred eEEEecCCCcEEeehhhc----Cchhhhcccc----hhheeeecccCCceEEEeech-------------------hhhh
Confidence 467888777554444433 5799999999 788999999999999999998 7778
Q ss_pred ccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCce
Q 023643 84 GFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENN 163 (279)
Q Consensus 84 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 163 (279)
..+..-.+.+..++-+|-+. .+-+|...|+|.+|...... .... .++|.++|.
T Consensus 245 a~~~t~~G~~~vm~qNP~Na--Vih~GhsnGtVSlWSP~ske---PLvK----------------------iLcH~g~V~ 297 (545)
T KOG1272|consen 245 ASIRTGAGRTDVMKQNPYNA--VIHLGHSNGTVSLWSPNSKE---PLVK----------------------ILCHRGPVS 297 (545)
T ss_pred HHHHccCCccchhhcCCccc--eEEEcCCCceEEecCCCCcc---hHHH----------------------HHhcCCCcc
Confidence 88888888899999999887 89999999999999965321 1111 123334589
Q ss_pred eEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC-CC--ceEEEec
Q 023643 164 AIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK-SG--KCIKVID 240 (279)
Q Consensus 164 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~-~~--~~~~~~~ 240 (279)
+|++.++|.+++|.+.|..++|||++....+.++.. .-+...+++|..| +++.+....|.||.-. .+ .....+-
T Consensus 298 siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm 374 (545)
T KOG1272|consen 298 SIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYM 374 (545)
T ss_pred eEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchh
Confidence 999999999999999999999999998887776654 4456777787443 4455566779999522 21 1111111
Q ss_pred CCccccccCcceeeeEEEEcCCCCEEEEEcCcc
Q 023643 241 PVKDKQLKGVISCVSCITLDASESWLVRVRATN 273 (279)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 273 (279)
. ......|..+.|.|-...|-.|-..|
T Consensus 375 ~------H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 375 N------HRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred h------hccCcccccceeccHHHeeeccccCC
Confidence 1 12234889999999776666554443
No 226
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.63 E-value=1.5e-13 Score=111.18 Aligned_cols=204 Identities=12% Similarity=0.119 Sum_probs=131.0
Q ss_pred ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCC---CcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSD---GSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.|.++|.++.. .+.+..+...+...+|+| ++++|+.+... ..|++|++.++.
T Consensus 171 ~l~~~d~~g~~---~~~l~~~~~~~~~p~~Sp----dg~~la~~~~~~~~~~i~v~d~~~g~------------------ 225 (417)
T TIGR02800 171 ELQVADYDGAN---PQTITRSREPILSPAWSP----DGQKLAYVSFESGKPEIYVQDLATGQ------------------ 225 (417)
T ss_pred eEEEEcCCCCC---CEEeecCCCceecccCCC----CCCEEEEEEcCCCCcEEEEEECCCCC------------------
Confidence 46667766543 233444556788999999 89999887643 479999998732
Q ss_pred cccccccCCccCeEEEEecCCCCceEE-EEeeCCC--cEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALL-LSCGDDG--RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS 157 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (279)
. ..+..+.+.+.+++|+|+++ .| ++.+.++ .|.+|++.+... ..+.... .
T Consensus 226 -~-~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~~i~~~d~~~~~~----~~l~~~~-~------------------ 278 (417)
T TIGR02800 226 -R-EKVASFPGMNGAPAFSPDGS--KLAVSLSKDGNPDIYVMDLDGKQL----TRLTNGP-G------------------ 278 (417)
T ss_pred -E-EEeecCCCCccceEECCCCC--EEEEEECCCCCccEEEEECCCCCE----EECCCCC-C------------------
Confidence 1 11223445566789999997 55 4555554 477788654211 1111100 0
Q ss_pred CCCCceeEEEcCCCCeEEEecC-CC--eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCC---eEEEEeCC
Q 023643 158 PVPENNAIAVDPQGGAIFSAAG-DS--CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG---TARIWDCK 231 (279)
Q Consensus 158 ~~~~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i~vwd~~ 231 (279)
......|+|+++.|+..+. .+ .|+++|+.+++... +..+........|+|++++|+.++.++ .|.+||+.
T Consensus 279 ---~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~ 354 (417)
T TIGR02800 279 ---IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD 354 (417)
T ss_pred ---CCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence 1245689999998776554 22 68888988766443 433455667889999999998888776 79999998
Q ss_pred CCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcc
Q 023643 232 SGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATN 273 (279)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 273 (279)
++... .+.. . .......|+|++++|+..+.++
T Consensus 355 ~~~~~-~l~~--------~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 355 GGGER-VLTD--------T-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CCCeE-EccC--------C-CCCCCceECCCCCEEEEEEeCC
Confidence 76543 3311 1 1234568999999888776543
No 227
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.62 E-value=1.5e-14 Score=106.33 Aligned_cols=247 Identities=15% Similarity=0.158 Sum_probs=149.4
Q ss_pred ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED 104 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 104 (279)
.+-|.++.|.. .|.+||+|..+|.|.++.-...... .+.+.............+..+. -...|+.+.|.++++.
T Consensus 25 adiis~vef~~----~Ge~LatGdkgGRVv~f~r~~~~~~-ey~~~t~fqshepEFDYLkSle-ieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 25 ADIISAVEFDH----YGERLATGDKGGRVVLFEREKLYKG-EYNFQTEFQSHEPEFDYLKSLE-IEEKINKIRWLDDGNL 98 (433)
T ss_pred hcceeeEEeec----ccceEeecCCCCeEEEeeccccccc-ceeeeeeeeccCcccchhhhhh-hhhhhhhceecCCCCc
Confidence 45688999999 8999999999999999986653210 1110000000000011111111 2356899999998876
Q ss_pred eEEEEeeCCCcEEEeecCCCccCcceeeec-cCcccceEEeec---CC-------CCCccccCCCCCCceeEEEcCCCCe
Q 023643 105 ALLLSCGDDGRICGWRWKEFTESKVPINLQ-GNHVKPVLDLVN---HQ-------HKGPWGALSPVPENNAIAVDPQGGA 173 (279)
Q Consensus 105 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~-------~~~~~~~~~~~~~i~~~~~~~~~~~ 173 (279)
..++....|.+|++|.++............ ......+..+.. .. ..+..-.-.|..-|++++++.|...
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et 178 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET 178 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence 788888999999999987533222100000 000011111100 00 0111112234446899999999988
Q ss_pred EEEecCCCeEEEEecCCCcE---EEEeecC-----CcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCceE----EEec
Q 023643 174 IFSAAGDSCAYCWDVESSRI---KMVFKGH-----SDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKCI----KVID 240 (279)
Q Consensus 174 l~~~~~d~~i~i~d~~~~~~---~~~~~~~-----~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~----~~~~ 240 (279)
++++. |-.|.+|++.--.. +-.++.+ ..-|++..|+|. .+.++-.+..|+|++-|+|...+- ..+.
T Consensus 179 ~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 179 FLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred Eeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence 88765 78899999864321 2222333 245788899994 788999999999999999853211 1111
Q ss_pred ----CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 241 ----PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 241 ----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+.....+..--..|..+.|+++|+||++-.. -+|++||
T Consensus 258 epedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD 299 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWD 299 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEe
Confidence 1111223334467899999999999998754 6789997
No 228
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.62 E-value=5.2e-14 Score=113.82 Aligned_cols=201 Identities=14% Similarity=0.188 Sum_probs=130.9
Q ss_pred CcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCcc--Cc
Q 023643 51 GSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTE--SK 128 (279)
Q Consensus 51 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~--~~ 128 (279)
+.+.+|++... ..+...+. -..+|.+++|+|... ++++.|..+|.|.+||++.... ..
T Consensus 222 ~~~~vW~~~~p------------------~~Pe~~~~-~~s~v~~~~f~p~~p-~ll~gG~y~GqV~lWD~~~~~~~~~s 281 (555)
T KOG1587|consen 222 GVLLVWSLKNP------------------NTPELVLE-SPSEVTCLKFCPFDP-NLLAGGCYNGQVVLWDLRKGSDTPPS 281 (555)
T ss_pred ceEEEEecCCC------------------CCceEEEe-cCCceeEEEeccCCc-ceEEeeccCceEEEEEccCCCCCCCc
Confidence 46888988864 23334443 456799999999877 6889999999999999986543 12
Q ss_pred ceeeeccCcccceEEee--------------cCCCCCcccc---------------------CCCCCCceeEEEcCC-CC
Q 023643 129 VPINLQGNHVKPVLDLV--------------NHQHKGPWGA---------------------LSPVPENNAIAVDPQ-GG 172 (279)
Q Consensus 129 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~---------------------~~~~~~i~~~~~~~~-~~ 172 (279)
........+..++..+. ..+.-..|.. ......+++++|.+. ..
T Consensus 282 ~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~ 361 (555)
T KOG1587|consen 282 GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN 361 (555)
T ss_pred ccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc
Confidence 22222222333333221 1111111111 012245778888774 34
Q ss_pred eEEEecCCCeEEEEecCC---C-----cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC-CCceEEEecCCc
Q 023643 173 AIFSAAGDSCAYCWDVES---S-----RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK-SGKCIKVIDPVK 243 (279)
Q Consensus 173 ~l~~~~~d~~i~i~d~~~---~-----~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~-~~~~~~~~~~~~ 243 (279)
.+++|+.+|.|.--+-.. + +....+..|.++|+++.++|=+..++..+.|-+++||... ...++..+
T Consensus 362 ~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~---- 437 (555)
T KOG1587|consen 362 HFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSL---- 437 (555)
T ss_pred eEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhh----
Confidence 677888888877633221 1 1233455688999999999965444444449999999987 56666666
Q ss_pred cccccCcceeeeEEEEcCCC-CEEEEEcCcceEEeCC
Q 023643 244 DKQLKGVISCVSCITLDASE-SWLVRVRATNYVILFS 279 (279)
Q Consensus 244 ~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd 279 (279)
..+...|++++|||-. ..++++..||.+.+||
T Consensus 438 ----~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWD 470 (555)
T KOG1587|consen 438 ----DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWD 470 (555)
T ss_pred ----hhccceeeeeEEcCcCceEEEEEcCCCceehhh
Confidence 4566679999999965 5677888899999998
No 229
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.59 E-value=7.3e-14 Score=100.61 Aligned_cols=199 Identities=19% Similarity=0.177 Sum_probs=135.6
Q ss_pred eEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEE
Q 023643 28 VFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALL 107 (279)
Q Consensus 28 v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 107 (279)
..++.|++ .+..++++-.+|.+.+-+..... .+..+.++.|+-++....|+...+ +++
T Consensus 124 ~lslD~~~----~~~~i~vs~s~G~~~~v~~t~~~-----------------le~vq~wk~He~E~Wta~f~~~~p-nlv 181 (339)
T KOG0280|consen 124 ALSLDIST----SGTKIFVSDSRGSISGVYETEMV-----------------LEKVQTWKVHEFEAWTAKFSDKEP-NLV 181 (339)
T ss_pred eeEEEeec----cCceEEEEcCCCcEEEEecceee-----------------eeecccccccceeeeeeecccCCC-ceE
Confidence 45678888 78889999999999854444321 455568899999999999987766 699
Q ss_pred EEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC-CCCeEEEecCCCeEEEE
Q 023643 108 LSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP-QGGAIFSAAGDSCAYCW 186 (279)
Q Consensus 108 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~ 186 (279)
.+||.|+.+..||++-. . ..+..-...|.. .|.+|.-+| .+.++++|+.|..|++|
T Consensus 182 ytGgDD~~l~~~D~R~p-~-~~i~~n~kvH~~---------------------GV~SI~ss~~~~~~I~TGsYDe~i~~~ 238 (339)
T KOG0280|consen 182 YTGGDDGSLSCWDIRIP-K-TFIWHNSKVHTS---------------------GVVSIYSSPPKPTYIATGSYDECIRVL 238 (339)
T ss_pred EecCCCceEEEEEecCC-c-ceeeecceeeec---------------------ceEEEecCCCCCceEEEeccccceeee
Confidence 99999999999998721 1 222221111111 367777775 56699999999999999
Q ss_pred ecCC-CcEEEEeecCCcceEEEEEcCC--CcEEEEecCCCeEEEEeCCCCceE--EEecCCccccccCcceeeeEEEEcC
Q 023643 187 DVES-SRIKMVFKGHSDYLHCIVARNS--TNQIVTGSEDGTARIWDCKSGKCI--KVIDPVKDKQLKGVISCVSCITLDA 261 (279)
Q Consensus 187 d~~~-~~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~ 261 (279)
|.++ ++++..-. -.+.|+.+.++|. +..|+++..+| .+|-+...+... ..+.. .+.|.+-+..-.|..
T Consensus 239 DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s-----~~~hdSl~YG~DWd~ 311 (339)
T KOG0280|consen 239 DTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPS-----DKIHDSLCYGGDWDS 311 (339)
T ss_pred ehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeec-----cccccceeecccccc
Confidence 9994 67776544 3488999999994 44566665555 677776554322 11211 156666666666755
Q ss_pred CCCEEEEEc-CcceEE-eC
Q 023643 262 SESWLVRVR-ATNYVI-LF 278 (279)
Q Consensus 262 ~~~~l~~~~-~d~~i~-~w 278 (279)
....|||++ .|+.++ +|
T Consensus 312 ~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 312 KDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred ccceeeeeeccccceeeee
Confidence 456688865 466644 55
No 230
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=5.8e-13 Score=107.41 Aligned_cols=194 Identities=10% Similarity=0.087 Sum_probs=121.2
Q ss_pred ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEe-cCCC--cEEEEeCCCCCcccccccCCcccceeeec
Q 023643 4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIA-SSDG--SITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~-~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.+.+|++++++...+..+. +.+..++|+| |++.|+.. +.+| .|.+||+.++
T Consensus 224 ~i~i~dl~~G~~~~l~~~~---~~~~~~~~SP----DG~~La~~~~~~g~~~I~~~d~~tg------------------- 277 (429)
T PRK03629 224 ALVIQTLANGAVRQVASFP---RHNGAPAFSP----DGSKLAFALSKTGSLNLYVMDLASG------------------- 277 (429)
T ss_pred EEEEEECCCCCeEEccCCC---CCcCCeEECC----CCCEEEEEEcCCCCcEEEEEECCCC-------------------
Confidence 5677777765443343343 3345689999 89888754 4455 4888898763
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeC-CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGD-DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV 159 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (279)
+.. .+..+...+....|+|+++ .|+..+. ++...+|.++............+.
T Consensus 278 ~~~-~lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~----------------------- 331 (429)
T PRK03629 278 QIR-QVTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVYKVNINGGAPQRITWEGS----------------------- 331 (429)
T ss_pred CEE-EccCCCCCcCceEECCCCC--EEEEEeCCCCCceEEEEECCCCCeEEeecCCC-----------------------
Confidence 222 2222334577899999998 7766554 455566654321111111111110
Q ss_pred CCceeEEEcCCCCeEEEecCC---CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCe---EEEEeCCCC
Q 023643 160 PENNAIAVDPQGGAIFSAAGD---SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT---ARIWDCKSG 233 (279)
Q Consensus 160 ~~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~---i~vwd~~~~ 233 (279)
......|+|+|++++..+.+ ..|.+||+.+++... +.. ........|+|||++|+.++.++. +.++++ +|
T Consensus 332 -~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G 407 (429)
T PRK03629 332 -QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DG 407 (429)
T ss_pred -CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CC
Confidence 13567899999988775543 458899998876543 332 122346789999999998887765 677776 46
Q ss_pred ceEEEecCCccccccCcceeeeEEEEcC
Q 023643 234 KCIKVIDPVKDKQLKGVISCVSCITLDA 261 (279)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 261 (279)
+....+ ..|...+...+|+|
T Consensus 408 ~~~~~l--------~~~~~~~~~p~Wsp 427 (429)
T PRK03629 408 RFKARL--------PATDGQVKFPAWSP 427 (429)
T ss_pred CCeEEC--------ccCCCCcCCcccCC
Confidence 666666 45666788888887
No 231
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=4.2e-13 Score=108.29 Aligned_cols=197 Identities=12% Similarity=0.103 Sum_probs=121.6
Q ss_pred ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEE-EecCCCcEEEEeCCCCCcccccccCCcccceeeeccc
Q 023643 4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIV-IASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEP 82 (279)
Q Consensus 4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (279)
.|.+||+++++...+.. ..+.+...+|+| |++.|+ +.+.+|...||.++.. ...
T Consensus 221 ~I~~~dl~~g~~~~l~~---~~g~~~~~~~SP----DG~~la~~~~~~g~~~Iy~~d~~------------------~~~ 275 (427)
T PRK02889 221 VVYVHDLATGRRRVVAN---FKGSNSAPAWSP----DGRTLAVALSRDGNSQIYTVNAD------------------GSG 275 (427)
T ss_pred EEEEEECCCCCEEEeec---CCCCccceEECC----CCCEEEEEEccCCCceEEEEECC------------------CCC
Confidence 47888887765333322 234566889999 888776 5677888777766432 122
Q ss_pred cccccCCccCeEEEEecCCCCceEEEEee-CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 83 DGFLHGHDGPAYDVKFYGGNEDALLLSCG-DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 83 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
...+..+.+......|+|+++ .|+..+ .+|...+|.++............+. .
T Consensus 276 ~~~lt~~~~~~~~~~wSpDG~--~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~------------------------~ 329 (427)
T PRK02889 276 LRRLTQSSGIDTEPFFSPDGR--SIYFTSDRGGAPQIYRMPASGGAAQRVTFTGS------------------------Y 329 (427)
T ss_pred cEECCCCCCCCcCeEEcCCCC--EEEEEecCCCCcEEEEEECCCCceEEEecCCC------------------------C
Confidence 233334444556788999998 666544 4577778876422111111111110 1
Q ss_pred ceeEEEcCCCCeEEEecCCC---eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCC---eEEEEeCCCCce
Q 023643 162 NNAIAVDPQGGAIFSAAGDS---CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG---TARIWDCKSGKC 235 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i~vwd~~~~~~ 235 (279)
.....|+|+|++++..+.++ .|.+||+.+++...... ........|+|+|+.|+..+.++ .+.+.++ +++.
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~ 406 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRI 406 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCc
Confidence 23568999999988766543 69999998877554332 22346789999999988776544 3566666 4555
Q ss_pred EEEecCCccccccCcceeeeEEEEcCC
Q 023643 236 IKVIDPVKDKQLKGVISCVSCITLDAS 262 (279)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~ 262 (279)
...+ ..+...+...+|+|-
T Consensus 407 ~~~l--------~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 407 KQRL--------SVQGGDVREPSWGPF 425 (427)
T ss_pred eEEe--------ecCCCCCCCCccCCC
Confidence 5555 334445667778763
No 232
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.57 E-value=1.2e-12 Score=95.99 Aligned_cols=255 Identities=10% Similarity=0.053 Sum_probs=156.4
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCC-CEEEEecCCCcEEEEeCCCCCccc---------ccccCC
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSP-DTIVIASSDGSITSYSIPSCISKL---------PLGLSN 71 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~---------~~~~~~ 71 (279)
|+.|.+|++...+. .........++.+++|+| +| ..|.+...+-.|.+|.+.+..... .+.+.+
T Consensus 70 ~~~vqvwsl~Qpew--~ckIdeg~agls~~~WSP----dgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~ 143 (447)
T KOG4497|consen 70 DPKVQVWSLVQPEW--YCKIDEGQAGLSSISWSP----DGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP 143 (447)
T ss_pred cceEEEEEeeccee--EEEeccCCCcceeeeECC----CcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECC
Confidence 57888998766543 334444568899999999 78 566677788999999998754322 111111
Q ss_pred c---------------------------------------------ccceeeecccc--ccccCCc-cCeEEEEecCCCC
Q 023643 72 S---------------------------------------------KVQQLLGIEPD--GFLHGHD-GPAYDVKFYGGNE 103 (279)
Q Consensus 72 ~---------------------------------------------~~~~~~~~~~~--~~~~~h~-~~v~~~~~~~~~~ 103 (279)
+ +..-.+-..++ ..+.-|. -.+..+.|+|.++
T Consensus 144 dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~q 223 (447)
T KOG4497|consen 144 DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQ 223 (447)
T ss_pred CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccc
Confidence 1 11000000000 0001122 3577889999887
Q ss_pred ceEEEEeeCCCcEEEeecCCCccCcceeee--------------------ccCcc------------c----ceEEe---
Q 023643 104 DALLLSCGDDGRICGWRWKEFTESKVPINL--------------------QGNHV------------K----PVLDL--- 144 (279)
Q Consensus 104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~--------------------~~~~~------------~----~~~~~--- 144 (279)
+|+.|+.|+.+|+.+--+.+.......+ ..++. . ..++.
T Consensus 224 --flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~ 301 (447)
T KOG4497|consen 224 --FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMT 301 (447)
T ss_pred --eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhc
Confidence 9999999999998664221100000000 00000 0 00000
Q ss_pred --ecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCC--CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEec
Q 023643 145 --VNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD--SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS 220 (279)
Q Consensus 145 --~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 220 (279)
..+.-+.+-+...+...+.-++|++|..++++-... ..+-+||++..+.-..+. ...+|+...|+|....|+.+.
T Consensus 302 pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vct 380 (447)
T KOG4497|consen 302 PVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCT 380 (447)
T ss_pred ceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEc
Confidence 011111222233344567889999999888876543 568999998766555443 567899999999888888888
Q ss_pred CCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcce
Q 023643 221 EDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNY 274 (279)
Q Consensus 221 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 274 (279)
....+++|...-...+.. ......|..+.|.-+|..++..+.|..
T Consensus 381 g~srLY~W~psg~~~V~v---------P~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 381 GKSRLYFWAPSGPRVVGV---------PKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred CCceEEEEcCCCceEEec---------CCCCceeeeEEecCCCcEEEEEcCCce
Confidence 788899998654333322 233368999999999999998888864
No 233
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.56 E-value=3.2e-12 Score=100.34 Aligned_cols=242 Identities=11% Similarity=0.125 Sum_probs=139.5
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
+|.|.+.|.++. +.+..+......-..+.|+| |++++.+.+.||.|.++|+.+ .+
T Consensus 15 ~~~v~viD~~t~--~~~~~i~~~~~~h~~~~~s~----Dgr~~yv~~rdg~vsviD~~~-------------------~~ 69 (369)
T PF02239_consen 15 SGSVAVIDGATN--KVVARIPTGGAPHAGLKFSP----DGRYLYVANRDGTVSVIDLAT-------------------GK 69 (369)
T ss_dssp GTEEEEEETTT---SEEEEEE-STTEEEEEE-TT-----SSEEEEEETTSEEEEEETTS-------------------SS
T ss_pred CCEEEEEECCCC--eEEEEEcCCCCceeEEEecC----CCCEEEEEcCCCeEEEEECCc-------------------cc
Confidence 578888887765 34666664444445578999 999999999999999999998 55
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEe-eCCCcEEEeecCCCccCcceee--------------eccCcccc--eEEe
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSC-GDDGRICGWRWKEFTESKVPIN--------------LQGNHVKP--VLDL 144 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~--------------~~~~~~~~--~~~~ 144 (279)
.+..++.-. ...+++++++++ +++++ ...+.+.++|.++.+..+.+.. ....+..+ +..+
T Consensus 70 ~v~~i~~G~-~~~~i~~s~DG~--~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l 146 (369)
T PF02239_consen 70 VVATIKVGG-NPRGIAVSPDGK--YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL 146 (369)
T ss_dssp EEEEEE-SS-EEEEEEE--TTT--EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE
T ss_pred EEEEEecCC-CcceEEEcCCCC--EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE
Confidence 566665433 367899999998 66655 5789999999876432221110 00001111 1111
Q ss_pred ecCCCC--------Ccc--ccCCCCCCceeEEEcCCCCeEEEe-cCCCeEEEEecCCCcEEEEe----------------
Q 023643 145 VNHQHK--------GPW--GALSPVPENNAIAVDPQGGAIFSA-AGDSCAYCWDVESSRIKMVF---------------- 197 (279)
Q Consensus 145 ~~~~~~--------~~~--~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~---------------- 197 (279)
.....- .+. .............|+|++++++++ ..+..|-++|..+++.+..+
T Consensus 147 kd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~ph 226 (369)
T PF02239_consen 147 KDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPH 226 (369)
T ss_dssp TTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEE
T ss_pred ccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccC
Confidence 110000 000 001112234568899999987664 45667888888766544332
Q ss_pred ---------------------------------------ecCCcceEEEEEcCCCcEEEEe----cCCCeEEEEeCCCCc
Q 023643 198 ---------------------------------------KGHSDYLHCIVARNSTNQIVTG----SEDGTARIWDCKSGK 234 (279)
Q Consensus 198 ---------------------------------------~~~~~~i~~i~~~~~~~~l~~~----~~d~~i~vwd~~~~~ 234 (279)
.....+ ..+..+|+++++.+. ...++|.++|.++.+
T Consensus 227 p~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~ 305 (369)
T PF02239_consen 227 PGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK 305 (369)
T ss_dssp TTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE
T ss_pred CCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcc
Confidence 111112 446778999998887 556889999999998
Q ss_pred eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC--cceEEeCC
Q 023643 235 CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA--TNYVILFS 279 (279)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~wd 279 (279)
....+.. +....+..+.|+++|+.+..+.. ++.|.+||
T Consensus 306 ~~~~i~~-------~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 306 VVKTITP-------GPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp EEE-HHH-------HHT--EEEEEE-TTSSEEEEEEE--TTEEEEEE
T ss_pred eeEEEec-------cCCCcEeccEECCCCCEEEEEEecCCCEEEEEE
Confidence 8777742 22234888999999997665543 34688876
No 234
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.55 E-value=4.1e-13 Score=111.71 Aligned_cols=183 Identities=19% Similarity=0.190 Sum_probs=137.3
Q ss_pred CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCcc----CeEEEEecCCCCceEEEEeeCCCc
Q 023643 40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDG----PAYDVKFYGGNEDALLLSCGDDGR 115 (279)
Q Consensus 40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~~~l~s~~~dg~ 115 (279)
+...++.++.+..+-+||.... .....+...+. ...-+-++++.- ++++|+--+.
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~-------------------~~~~~i~~~er~~l~~~~~~g~s~~~~--~i~~gsv~~~ 156 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNS-------------------SVLSKIQSDERCTLYSSLIIGDSAEEL--YIASGSVFGE 156 (967)
T ss_pred hcceEEEEEcCceEEEEecccC-------------------ceehhcCCCceEEEEeEEEEeccCcEE--EEEecccccc
Confidence 4567888888889999998762 22222221111 122233445544 8999999999
Q ss_pred EEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEE
Q 023643 116 ICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKM 195 (279)
Q Consensus 116 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 195 (279)
|.+|++... +....+.+ |++.|.++.++-+|.++++.+.|.++++|++.+.+...
T Consensus 157 iivW~~~~d---n~p~~l~G----------------------HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~ 211 (967)
T KOG0974|consen 157 IIVWKPHED---NKPIRLKG----------------------HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG 211 (967)
T ss_pred EEEEecccc---CCcceecc----------------------cCCceEEEEEccCCcEEEEEecCcceeeeecccccccC
Confidence 999997521 11112222 23347899999999999999999999999999988776
Q ss_pred -EeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcc-eeeeEEEEcCCCCEEEEEcCcc
Q 023643 196 -VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVI-SCVSCITLDASESWLVRVRATN 273 (279)
Q Consensus 196 -~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~ 273 (279)
..-+|...+..++|.|. .+++++.|-+.++|+. .++.+.++ .+|. ..++.++..++...++|++.|+
T Consensus 212 ~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y--------~~h~g~~iw~~~~~~~~~~~vT~g~Ds 280 (967)
T KOG0974|consen 212 CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVY--------DEHSGKGIWKIAVPIGVIIKVTGGNDS 280 (967)
T ss_pred cccccccceeEEEEeccc--eeEEeccceEEEEEec-ccceehhh--------hhhhhcceeEEEEcCCceEEEeeccCc
Confidence 66679999999999987 9999999999999975 45555566 3443 4689999999999999999999
Q ss_pred eEEeCC
Q 023643 274 YVILFS 279 (279)
Q Consensus 274 ~i~~wd 279 (279)
.+++||
T Consensus 281 ~lk~~~ 286 (967)
T KOG0974|consen 281 TLKLWD 286 (967)
T ss_pred chhhhh
Confidence 999996
No 235
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=4.2e-12 Score=103.10 Aligned_cols=201 Identities=13% Similarity=0.091 Sum_probs=123.4
Q ss_pred eeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCC---CcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 5 STNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSD---GSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 5 v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
|.++|.++.. .+.+..+...+...+|+| +++.|+..+.+ ..|.+|++.++. .+
T Consensus 181 l~~~d~~g~~---~~~l~~~~~~~~~p~wSp----DG~~la~~s~~~~~~~l~~~~l~~g~-----------------~~ 236 (430)
T PRK00178 181 LQRSDYDGAR---AVTLLQSREPILSPRWSP----DGKRIAYVSFEQKRPRIFVQNLDTGR-----------------RE 236 (430)
T ss_pred EEEECCCCCC---ceEEecCCCceeeeeECC----CCCEEEEEEcCCCCCEEEEEECCCCC-----------------EE
Confidence 5566766643 233444567889999999 89988776533 368889998742 11
Q ss_pred ccccccCCccCeEEEEecCCCCceEEE-EeeCCC--cEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLL-SCGDDG--RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP 158 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (279)
.+... .+.+....|+|+++ .|+ +.+.+| .|.++|+++... ..+.....
T Consensus 237 ~l~~~---~g~~~~~~~SpDG~--~la~~~~~~g~~~Iy~~d~~~~~~----~~lt~~~~-------------------- 287 (430)
T PRK00178 237 QITNF---EGLNGAPAWSPDGS--KLAFVLSKDGNPEIYVMDLASRQL----SRVTNHPA-------------------- 287 (430)
T ss_pred EccCC---CCCcCCeEECCCCC--EEEEEEccCCCceEEEEECCCCCe----EEcccCCC--------------------
Confidence 12222 23345689999998 555 555555 577778754311 11111000
Q ss_pred CCCceeEEEcCCCCeEEEecC-C--CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC-C--eEEEEeCCC
Q 023643 159 VPENNAIAVDPQGGAIFSAAG-D--SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED-G--TARIWDCKS 232 (279)
Q Consensus 159 ~~~i~~~~~~~~~~~l~~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-~--~i~vwd~~~ 232 (279)
......|+|+++.++..+. + ..|+++|+.+++..+... .........|+|+|++|+..+.+ + .|.++|+.+
T Consensus 288 --~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t 364 (430)
T PRK00178 288 --IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR 364 (430)
T ss_pred --CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccceEECCCCCEEEEEEccCCceEEEEEECCC
Confidence 1346789999997765543 3 368888888776544321 22233456899999998776543 3 588899988
Q ss_pred CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643 233 GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA 271 (279)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 271 (279)
++.. .+.. . .......|+|||+.|+..+.
T Consensus 365 g~~~-~lt~-------~--~~~~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 365 GSVR-ILTD-------T--SLDESPSVAPNGTMLIYATR 393 (430)
T ss_pred CCEE-EccC-------C--CCCCCceECCCCCEEEEEEe
Confidence 7653 3321 1 11124589999998876654
No 236
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.54 E-value=2.2e-13 Score=100.33 Aligned_cols=232 Identities=14% Similarity=0.189 Sum_probs=151.3
Q ss_pred ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccc-ccccCCcc---------------cceeeecccccccc-
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKL-PLGLSNSK---------------VQQLLGIEPDGFLH- 87 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~---------------~~~~~~~~~~~~~~- 87 (279)
...|..+.|.+. .+...++..+.|.+|++|.+....... .+...... .+..+...+.+.+.
T Consensus 84 eEKinkIrw~~~--~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aN 161 (433)
T KOG1354|consen 84 EEKINKIRWLDD--GNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYAN 161 (433)
T ss_pred hhhhhhceecCC--CCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccc
Confidence 357889999883 244567788899999999997654333 11110000 01111144445553
Q ss_pred CCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEE
Q 023643 88 GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAV 167 (279)
Q Consensus 88 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 167 (279)
.|.--|++++++.+.. .++++. |=.|.+|+++-....-.+...+......+..+ |++..|
T Consensus 162 aHtyhiNSIS~NsD~E--t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteV-----------------ITsaEF 221 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKE--TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEV-----------------ITSAEF 221 (433)
T ss_pred cceeEeeeeeecCccc--eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHH-----------------Hhhhcc
Confidence 4888899999999987 777764 78899999875444444444444433332221 788899
Q ss_pred cCCC-CeEEEecCCCeEEEEecCCCcEE----EEee------------cCCcceEEEEEcCCCcEEEEecCCCeEEEEeC
Q 023643 168 DPQG-GAIFSAAGDSCAYCWDVESSRIK----MVFK------------GHSDYLHCIVARNSTNQIVTGSEDGTARIWDC 230 (279)
Q Consensus 168 ~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~~~~------------~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~ 230 (279)
+|.. +.++-.+..|+|++.|++...+. ..|. .--..|..+.|+++|+|+++-.. -+|++||+
T Consensus 222 hp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~ 300 (433)
T KOG1354|consen 222 HPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDL 300 (433)
T ss_pred CHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEec
Confidence 9954 46666777899999999853211 1111 11246788999999999998643 57999999
Q ss_pred -CCCceEEEecCCcccc-----c--cCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 231 -KSGKCIKVIDPVKDKQ-----L--KGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 231 -~~~~~~~~~~~~~~~~-----~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
...+++.+++.+.... + ...-..-..++|+.++.+++||+..+.+++|+
T Consensus 301 nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 301 NMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred cccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence 5677777776553110 0 00111235678999999999999999999875
No 237
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=3.4e-12 Score=103.49 Aligned_cols=158 Identities=11% Similarity=0.047 Sum_probs=104.7
Q ss_pred cccccCCccCeEEEEecCCCCceEEEEeeC---CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643 83 DGFLHGHDGPAYDVKFYGGNEDALLLSCGD---DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV 159 (279)
Q Consensus 83 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (279)
...+..|...+...+|+|+++ .|+..+. +..|.+||+...... ......+
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~--~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g------------------------ 246 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQ--EITYMSYANGRPRVYLLDLETGQRE-LVGNFPG------------------------ 246 (435)
T ss_pred cEEEecCCCCeEeeEECCCCC--EEEEEEecCCCCEEEEEECCCCcEE-EeecCCC------------------------
Confidence 345556788899999999998 7776653 468999998643211 1100111
Q ss_pred CCceeEEEcCCCCeEE-EecCCC--eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC-CC--eEEEEeCCCC
Q 023643 160 PENNAIAVDPQGGAIF-SAAGDS--CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE-DG--TARIWDCKSG 233 (279)
Q Consensus 160 ~~i~~~~~~~~~~~l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~vwd~~~~ 233 (279)
.+...+|+|+|+.|+ +.+.++ .|++||+.+++.. .+..+........|+|+|+.|+..+. +| .|+++|+..+
T Consensus 247 -~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~ 324 (435)
T PRK05137 247 -MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS 324 (435)
T ss_pred -cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence 145779999999775 445444 4888899877654 45556666778899999998887663 33 6888898766
Q ss_pred ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc---ceEEeC
Q 023643 234 KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT---NYVILF 278 (279)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~~w 278 (279)
+..... .+...+....|+|+|++|+..+.+ ..|.+|
T Consensus 325 ~~~~lt---------~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~ 363 (435)
T PRK05137 325 NPRRIS---------FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVM 363 (435)
T ss_pred CeEEee---------cCCCcccCeEECCCCCEEEEEEcCCCceEEEEE
Confidence 544332 223345667899999999876543 245554
No 238
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.53 E-value=2.9e-12 Score=100.64 Aligned_cols=188 Identities=14% Similarity=0.186 Sum_probs=137.4
Q ss_pred CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEec------C-------------
Q 023643 40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFY------G------------- 100 (279)
Q Consensus 40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~------~------------- 100 (279)
...++|....||.+++|+.........+ .+...+ ++...+..|. |
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~-------------~p~~~~---s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s 67 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEF-------------APIASL---SGTCTYTKWGLSADYSPMKWLSLEKAKKAS 67 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeee-------------ccchhc---cCcceeEEEEEEeccchHHHHhHHHHhhcc
Confidence 5789999999999999999875332211 111111 2223333331 1
Q ss_pred CCCceEEEEeeCCCcEEEeecCCCccCcceeeec-cCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC
Q 023643 101 GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQ-GNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG 179 (279)
Q Consensus 101 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 179 (279)
.+. ..++-|...|.|.++++..+ +....+. +.+.. .|+++.++.+-..|++++.
T Consensus 68 ~~t-~~lvlgt~~g~v~~ys~~~g---~it~~~st~~h~~---------------------~v~~~~~~~~~~ciyS~~a 122 (541)
T KOG4547|consen 68 LDT-SMLVLGTPQGSVLLYSVAGG---EITAKLSTDKHYG---------------------NVNEILDAQRLGCIYSVGA 122 (541)
T ss_pred CCc-eEEEeecCCccEEEEEecCC---eEEEEEecCCCCC---------------------cceeeecccccCceEecCC
Confidence 111 36788888899999996432 2222222 22222 3788888888889999999
Q ss_pred CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEE
Q 023643 180 DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITL 259 (279)
Q Consensus 180 d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 259 (279)
|+.+..|+....+.++.++.....+.+++.+||+..+++++ +.|++||+.+.+.+..+ .+|.++|.++.|
T Consensus 123 d~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~f--------tgh~s~v~t~~f 192 (541)
T KOG4547|consen 123 DLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITF--------TGHGSPVRTLSF 192 (541)
T ss_pred ceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEe--------cCCCcceEEEEE
Confidence 99999999999999999999889999999999999999875 78999999999999999 799999999999
Q ss_pred cCC-----CCEEEEE-cCcceEEeC
Q 023643 260 DAS-----ESWLVRV-RATNYVILF 278 (279)
Q Consensus 260 ~~~-----~~~l~~~-~~d~~i~~w 278 (279)
--+ |.+++++ ..+..+.+|
T Consensus 193 ~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 193 TTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred EEeccccccceeeeccccccceeEE
Confidence 776 6666654 334444444
No 239
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.52 E-value=5.9e-13 Score=110.75 Aligned_cols=145 Identities=21% Similarity=0.229 Sum_probs=117.9
Q ss_pred CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEe
Q 023643 40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGW 119 (279)
Q Consensus 40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 119 (279)
+.-++++|+.-+.|.+|+... .+.-..+.+|++.+.++.|+.++. +++++|.|.++|+|
T Consensus 144 ~~~~i~~gsv~~~iivW~~~~-------------------dn~p~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW 202 (967)
T KOG0974|consen 144 EELYIASGSVFGEIIVWKPHE-------------------DNKPIRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLW 202 (967)
T ss_pred cEEEEEeccccccEEEEeccc-------------------cCCcceecccCCceEEEEEccCCc--EEEEEecCcceeee
Confidence 678999999999999999984 122225789999999999999998 99999999999999
Q ss_pred ecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec
Q 023643 120 RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG 199 (279)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 199 (279)
++++.+... ... +.|..++..+.|.|. .+++++.|.+.++|+.. ++.+..++.
T Consensus 203 ~i~s~~~~~--~~~----------------------fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~ 255 (967)
T KOG0974|consen 203 PIDSREVLG--CTG----------------------FGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDE 255 (967)
T ss_pred ecccccccC--ccc----------------------ccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhh
Confidence 997643222 111 222234678899987 89999999999999764 666668888
Q ss_pred CC-cceEEEEEcCCCcEEEEecCCCeEEEEeCCC
Q 023643 200 HS-DYLHCIVARNSTNQIVTGSEDGTARIWDCKS 232 (279)
Q Consensus 200 ~~-~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~ 232 (279)
|. ..+..++..+....+++++.|+.+++||+..
T Consensus 256 h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 256 HSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred hhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 76 4689999999999999999999999999754
No 240
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.51 E-value=3.1e-12 Score=100.46 Aligned_cols=183 Identities=17% Similarity=0.262 Sum_probs=132.0
Q ss_pred CCceeeeccccccccce-eeeeecccceEEEEEC------C----------CCCCCCCEEEEecCCCcEEEEeCCCCCcc
Q 023643 2 CGDSTNWDEDAYRKSIL-KEREILTRTVFRTVWG------P----------SKDGSPDTIVIASSDGSITSYSIPSCISK 64 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~-~~~~~~~~~v~~~~~~------~----------~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 64 (279)
||.+|+|+....+...- .....-.+..++..|. | ..+.+...++-|...|.|.+|++..
T Consensus 14 ~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~---- 89 (541)
T KOG4547|consen 14 DGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAG---- 89 (541)
T ss_pred CCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecC----
Confidence 89999999776542111 1111112344444442 2 1123556788899999999999997
Q ss_pred cccccCCcccceeeecccccccc--CCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceE
Q 023643 65 LPLGLSNSKVQQLLGIEPDGFLH--GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVL 142 (279)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 142 (279)
++....+. .|.++|.++.++.+-. .|.|++.|+.+..|+... ...+........
T Consensus 90 ---------------g~it~~~st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~---~~~~~~~~~~~~---- 145 (541)
T KOG4547|consen 90 ---------------GEITAKLSTDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKE---KVIIRIWKEQKP---- 145 (541)
T ss_pred ---------------CeEEEEEecCCCCCcceeeecccccC--ceEecCCceeEEEEeccc---ceeeeeeccCCC----
Confidence 44444444 5999999999998877 999999999999999653 233333333221
Q ss_pred EeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCC-----CcEEE
Q 023643 143 DLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNS-----TNQIV 217 (279)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~-----~~~l~ 217 (279)
.+.+++.+||+..+++++ +.|++||+.+++.+..|.+|.++|+++.|-.. |.+++
T Consensus 146 ------------------~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vL 205 (541)
T KOG4547|consen 146 ------------------LVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVL 205 (541)
T ss_pred ------------------ccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceee
Confidence 257899999999999887 78999999999999999999999999999776 66666
Q ss_pred Ee-cCCCeEEEEeCCC
Q 023643 218 TG-SEDGTARIWDCKS 232 (279)
Q Consensus 218 ~~-~~d~~i~vwd~~~ 232 (279)
++ ..+..+.+|-++.
T Consensus 206 ssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 206 SSAAAERGITVWVVEK 221 (541)
T ss_pred eccccccceeEEEEEc
Confidence 54 4566678886654
No 241
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.51 E-value=2.2e-12 Score=94.68 Aligned_cols=221 Identities=11% Similarity=0.074 Sum_probs=143.8
Q ss_pred cceEEEEECCCCCCCCCEEE-EecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643 26 RTVFRTVWGPSKDGSPDTIV-IASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED 104 (279)
Q Consensus 26 ~~v~~~~~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 104 (279)
+.|..+.|.. +..+++ ....++.|.+|++.. .+-...+..-..++.+++|+|++.
T Consensus 49 dki~yieW~a----ds~~ilC~~yk~~~vqvwsl~Q-------------------pew~ckIdeg~agls~~~WSPdgr- 104 (447)
T KOG4497|consen 49 DKIVYIEWKA----DSCHILCVAYKDPKVQVWSLVQ-------------------PEWYCKIDEGQAGLSSISWSPDGR- 104 (447)
T ss_pred HHhhheeeec----cceeeeeeeeccceEEEEEeec-------------------ceeEEEeccCCCcceeeeECCCcc-
Confidence 5678889988 555554 457888999999987 344455666678899999999997
Q ss_pred eEEEEeeCCCcEEEeecCCCccCcc------eeeeccCcccceEEeecCCC---------------------------CC
Q 023643 105 ALLLSCGDDGRICGWRWKEFTESKV------PINLQGNHVKPVLDLVNHQH---------------------------KG 151 (279)
Q Consensus 105 ~~l~s~~~dg~i~iw~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~---------------------------~~ 151 (279)
+.|.+...|-.|.+|.+.+....-. ...+.-+.......+..... .-
T Consensus 105 hiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dltgi 184 (447)
T KOG4497|consen 105 HILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGI 184 (447)
T ss_pred eEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCc
Confidence 5888899999999999976421100 00000011111111100000 00
Q ss_pred cc----------c--------cCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEE-----------------
Q 023643 152 PW----------G--------ALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMV----------------- 196 (279)
Q Consensus 152 ~~----------~--------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----------------- 196 (279)
.| + .....-.+..++|+|.+++|++|+.|+.+++.+--+.++..+
T Consensus 185 eWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~k 264 (447)
T KOG4497|consen 185 EWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEK 264 (447)
T ss_pred eECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhh
Confidence 00 0 011123567889999999999999999998865432221111
Q ss_pred -------------------------------------------ee------cCCcceEEEEEcCCCcEEEEecC--CCeE
Q 023643 197 -------------------------------------------FK------GHSDYLHCIVARNSTNQIVTGSE--DGTA 225 (279)
Q Consensus 197 -------------------------------------------~~------~~~~~i~~i~~~~~~~~l~~~~~--d~~i 225 (279)
++ .....+.-++|++|..++++-.. -+.+
T Consensus 265 e~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~Pnal 344 (447)
T KOG4497|consen 265 ETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNAL 344 (447)
T ss_pred hhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceE
Confidence 01 11123556899999999998754 4568
Q ss_pred EEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 226 RIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 226 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
-+||++..+.-..+ ....+|....|+|....|+.+.....+++|.
T Consensus 345 W~Wdlq~l~l~avL---------iQk~piraf~WdP~~prL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 345 WLWDLQNLKLHAVL---------IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWA 389 (447)
T ss_pred EEEechhhhhhhhh---------hhccceeEEEeCCCCceEEEEcCCceEEEEc
Confidence 99999887765555 3445799999999988888887777788883
No 242
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.7e-11 Score=98.66 Aligned_cols=206 Identities=13% Similarity=0.041 Sum_probs=117.3
Q ss_pred ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEE---EEecCCC--cEEEEeCCCCCcccccccCCcccceee
Q 023643 4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTI---VIASSDG--SITSYSIPSCISKLPLGLSNSKVQQLL 78 (279)
Q Consensus 4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l---~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~ 78 (279)
.|.+.|.++..... +......+..-+|+| ||+.+ ++...+| .|.+.++.+++
T Consensus 166 ~l~~~d~dG~~~~~---lt~~~~~~~sP~wSP----DG~~~~~~y~S~~~g~~~I~~~~l~~g~---------------- 222 (428)
T PRK01029 166 ELWSVDYDGQNLRP---LTQEHSLSITPTWMH----IGSGFPYLYVSYKLGVPKIFLGSLENPA---------------- 222 (428)
T ss_pred eEEEEcCCCCCceE---cccCCCCcccceEcc----CCCceEEEEEEccCCCceEEEEECCCCC----------------
Confidence 45556666654322 222345667889999 88742 2444444 46777777632
Q ss_pred eccccccccCCccCeEEEEecCCCCceEEEEee-CCC----cEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcc
Q 023643 79 GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCG-DDG----RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPW 153 (279)
Q Consensus 79 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (279)
.+.+..+ .+.....+|+|+|+ .|+..+ .+| .+.+|++................
T Consensus 223 -~~~lt~~---~g~~~~p~wSPDG~--~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~---------------- 280 (428)
T PRK01029 223 -GKKILAL---QGNQLMPTFSPRKK--LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF---------------- 280 (428)
T ss_pred -ceEeecC---CCCccceEECCCCC--EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCC----------------
Confidence 1222223 33345689999998 665443 233 23335554321111100010000
Q ss_pred ccCCCCCCceeEEEcCCCCeEEEec-CCCe--EEEEecCC-CcEEEEeecCCcceEEEEEcCCCcEEEEecCC---CeEE
Q 023643 154 GALSPVPENNAIAVDPQGGAIFSAA-GDSC--AYCWDVES-SRIKMVFKGHSDYLHCIVARNSTNQIVTGSED---GTAR 226 (279)
Q Consensus 154 ~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~--i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i~ 226 (279)
......+|+|||+.|+..+ .+|. |.++++.. +.....+..+...+....|+|+|+.|+..+.+ ..|.
T Consensus 281 ------~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~ 354 (428)
T PRK01029 281 ------GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQIC 354 (428)
T ss_pred ------CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEE
Confidence 0135679999999776654 4554 45555542 23344454445566788999999988876543 4699
Q ss_pred EEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEE
Q 023643 227 IWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV 269 (279)
Q Consensus 227 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 269 (279)
+||+.+++..... .....+....|+|||+.|+..
T Consensus 355 v~dl~~g~~~~Lt---------~~~~~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 355 VYDLATGRDYQLT---------TSPENKESPSWAIDSLHLVYS 388 (428)
T ss_pred EEECCCCCeEEcc---------CCCCCccceEECCCCCEEEEE
Confidence 9999888765432 112345678999999988754
No 243
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=4.8e-12 Score=102.52 Aligned_cols=192 Identities=13% Similarity=0.101 Sum_probs=117.3
Q ss_pred ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEE-EecCCC--cEEEEeCCCCCcccccccCCcccceeeec
Q 023643 4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIV-IASSDG--SITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~-~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.|.+||+++.+...+.. ..+...+++|+| +++.|+ +.+.+| .|.+||+.++
T Consensus 229 ~l~~~dl~~g~~~~l~~---~~g~~~~~~~Sp----DG~~l~~~~s~~g~~~Iy~~d~~~g------------------- 282 (433)
T PRK04922 229 AIYVQDLATGQRELVAS---FRGINGAPSFSP----DGRRLALTLSRDGNPEIYVMDLGSR------------------- 282 (433)
T ss_pred EEEEEECCCCCEEEecc---CCCCccCceECC----CCCEEEEEEeCCCCceEEEEECCCC-------------------
Confidence 57788887665333322 234455789999 888775 445555 5889998863
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEee-CCCcEEE--eecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCG-DDGRICG--WRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS 157 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~i--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (279)
+ ...+..+.......+|+|+++ .|+..+ .+|...+ +++.... .......+.
T Consensus 283 ~-~~~lt~~~~~~~~~~~spDG~--~l~f~sd~~g~~~iy~~dl~~g~--~~~lt~~g~--------------------- 336 (433)
T PRK04922 283 Q-LTRLTNHFGIDTEPTWAPDGK--SIYFTSDRGGRPQIYRVAASGGS--AERLTFQGN--------------------- 336 (433)
T ss_pred C-eEECccCCCCccceEECCCCC--EEEEEECCCCCceEEEEECCCCC--eEEeecCCC---------------------
Confidence 2 122333444456789999998 676655 4555444 4443211 111111110
Q ss_pred CCCCceeEEEcCCCCeEEEecCCC---eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC---CeEEEEeCC
Q 023643 158 PVPENNAIAVDPQGGAIFSAAGDS---CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED---GTARIWDCK 231 (279)
Q Consensus 158 ~~~~i~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i~vwd~~ 231 (279)
.....+|+|++++++..+.++ .|.+||+.+++.. .+. +........|+|+|++|+..+.+ +.|.++++.
T Consensus 337 ---~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 337 ---YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred ---CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 124679999999887765432 6999999887765 333 22234567899999988776653 458888874
Q ss_pred CCceEEEecCCccccccCcceeeeEEEEcC
Q 023643 232 SGKCIKVIDPVKDKQLKGVISCVSCITLDA 261 (279)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 261 (279)
+.....+ ..+...+...+|+|
T Consensus 412 -g~~~~~l--------~~~~g~~~~p~wsp 432 (433)
T PRK04922 412 -GRVRQRL--------VSADGEVREPAWSP 432 (433)
T ss_pred -CCceEEc--------ccCCCCCCCCccCC
Confidence 4445555 23334566677776
No 244
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.2e-11 Score=100.25 Aligned_cols=201 Identities=11% Similarity=0.099 Sum_probs=117.8
Q ss_pred eeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecC-CC--cEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 5 STNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASS-DG--SITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 5 v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
+.++|.++... +.+..+...+....|+| |++.|+..+. ++ .|.+||+.++. .+
T Consensus 200 l~i~d~dG~~~---~~l~~~~~~~~~p~wSP----DG~~La~~s~~~g~~~L~~~dl~tg~-----------------~~ 255 (448)
T PRK04792 200 LMIADYDGYNE---QMLLRSPEPLMSPAWSP----DGRKLAYVSFENRKAEIFVQDIYTQV-----------------RE 255 (448)
T ss_pred EEEEeCCCCCc---eEeecCCCcccCceECC----CCCEEEEEEecCCCcEEEEEECCCCC-----------------eE
Confidence 44456555432 22333456788999999 8998887653 33 58888887632 11
Q ss_pred ccccccCCccCeEEEEecCCCCceEEE-EeeCCCc--EEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLL-SCGDDGR--ICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP 158 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (279)
.+..+.+ ......|+|+++ .|+ +.+.+|. |.++|+.... ...+..+.
T Consensus 256 ~lt~~~g---~~~~~~wSPDG~--~La~~~~~~g~~~Iy~~dl~tg~----~~~lt~~~--------------------- 305 (448)
T PRK04792 256 KVTSFPG---INGAPRFSPDGK--KLALVLSKDGQPEIYVVDIATKA----LTRITRHR--------------------- 305 (448)
T ss_pred EecCCCC---CcCCeeECCCCC--EEEEEEeCCCCeEEEEEECCCCC----eEECccCC---------------------
Confidence 2222222 234679999998 554 5666776 5566654321 11111100
Q ss_pred CCCceeEEEcCCCCeEEEecC-C--CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC-CC--eEEEEeCCC
Q 023643 159 VPENNAIAVDPQGGAIFSAAG-D--SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE-DG--TARIWDCKS 232 (279)
Q Consensus 159 ~~~i~~~~~~~~~~~l~~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~vwd~~~ 232 (279)
.......|+|+++.++..+. + ..|+++|+.+++..+.. .........+|+|+|++|+..+. ++ .|.++|+.+
T Consensus 306 -~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~ 383 (448)
T PRK04792 306 -AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET 383 (448)
T ss_pred -CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCC
Confidence 01356789999997766543 3 35777888777654432 12222345689999998877654 33 466678877
Q ss_pred CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643 233 GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA 271 (279)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 271 (279)
++.. .+.. .. ......|+|||+.|+..+.
T Consensus 384 g~~~-~lt~-------~~--~d~~ps~spdG~~I~~~~~ 412 (448)
T PRK04792 384 GAMQ-VLTS-------TR--LDESPSVAPNGTMVIYSTT 412 (448)
T ss_pred CCeE-EccC-------CC--CCCCceECCCCCEEEEEEe
Confidence 7653 3321 11 1123479999998876544
No 245
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.48 E-value=2.5e-11 Score=87.80 Aligned_cols=164 Identities=18% Similarity=0.178 Sum_probs=116.7
Q ss_pred ccCeEEEEecCC--CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEE
Q 023643 90 DGPAYDVKFYGG--NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAV 167 (279)
Q Consensus 90 ~~~v~~~~~~~~--~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 167 (279)
...+..+.|+-- +..-.++-+..+|.|.++.............+........ ...++.|
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~-------------------~~lslD~ 129 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVV-------------------EALSLDI 129 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhe-------------------eeeEEEe
Confidence 345777777642 2112567778889999998654322222222222211111 1357889
Q ss_pred cCCCCeEEEecCCCeEEEEecCCCcEE--EEeecCCcceEEEEEcC-CCcEEEEecCCCeEEEEeCCC-CceEEEecCCc
Q 023643 168 DPQGGAIFSAAGDSCAYCWDVESSRIK--MVFKGHSDYLHCIVARN-STNQIVTGSEDGTARIWDCKS-GKCIKVIDPVK 243 (279)
Q Consensus 168 ~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~ 243 (279)
++.+..++++..+|.+.+-+....... +..+.|+-..+...|+. +.+.+.+|+.|+.+..||+|. ++.+..-.
T Consensus 130 ~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~--- 206 (339)
T KOG0280|consen 130 STSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNS--- 206 (339)
T ss_pred eccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecc---
Confidence 999999999999999997666555444 47889999999999987 468999999999999999994 33333311
Q ss_pred cccccCcceeeeEEEEcC-CCCEEEEEcCcceEEeCC
Q 023643 244 DKQLKGVISCVSCITLDA-SESWLVRVRATNYVILFS 279 (279)
Q Consensus 244 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd 279 (279)
+.|...|.++.-+| .+.+|+||+.|-.|++||
T Consensus 207 ----kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~D 239 (339)
T KOG0280|consen 207 ----KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLD 239 (339)
T ss_pred ----eeeecceEEEecCCCCCceEEEeccccceeeee
Confidence 67888999998776 578999999999999997
No 246
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.47 E-value=3e-13 Score=118.31 Aligned_cols=185 Identities=13% Similarity=0.176 Sum_probs=140.1
Q ss_pred eecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccC-CccCeEEEEecC
Q 023643 22 EILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHG-HDGPAYDVKFYG 100 (279)
Q Consensus 22 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~ 100 (279)
+.+-..|.++.-+| ...+.++|+.||.+++|.-.. +..+..++. -...|+.+.|+.
T Consensus 2205 k~~v~~v~r~~sHp----~~~~Yltgs~dgsv~~~~w~~-------------------~~~v~~~rt~g~s~vtr~~f~~ 2261 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHP----SDPYYLTGSQDGSVRMFEWGH-------------------GQQVVCFRTAGNSRVTRSRFNH 2261 (2439)
T ss_pred ecccCceeeecCCC----CCceEEecCCCceEEEEeccC-------------------CCeEEEeeccCcchhhhhhhcc
Confidence 34556788888888 678889999999999999887 344444432 237899999999
Q ss_pred CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec--
Q 023643 101 GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA-- 178 (279)
Q Consensus 101 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-- 178 (279)
+|+ .+..+..||.+.+|.... +.....+.+.. ....+.|-. ..+++++
T Consensus 2262 qGn--k~~i~d~dg~l~l~q~~p----k~~~s~qchnk----------------------~~~Df~Fi~--s~~~tag~s 2311 (2439)
T KOG1064|consen 2262 QGN--KFGIVDGDGDLSLWQASP----KPYTSWQCHNK----------------------ALSDFRFIG--SLLATAGRS 2311 (2439)
T ss_pred cCC--ceeeeccCCceeecccCC----cceeccccCCc----------------------cccceeeee--hhhhccccC
Confidence 998 899999999999999751 22222222211 234555543 4556554
Q ss_pred -CCCeEEEEecCCC---cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceee
Q 023643 179 -GDSCAYCWDVESS---RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCV 254 (279)
Q Consensus 179 -~d~~i~i~d~~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v 254 (279)
.++.+.+||..-. .++. ..|.+.++++++.|..+.|++|+.+|.|++||++..++++.++ .
T Consensus 2312 ~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~--------~----- 2376 (2439)
T KOG1064|consen 2312 SDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ--------A----- 2376 (2439)
T ss_pred CCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh--------h-----
Confidence 4688999997532 2334 6799999999999999999999999999999999988888873 1
Q ss_pred eEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 255 SCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 255 ~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
++ ...++++|+..|.++||+
T Consensus 2377 ----~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2377 ----LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred ----hh-hhheeeccCcccceEEEE
Confidence 44 578899999999999996
No 247
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.47 E-value=4.3e-10 Score=88.43 Aligned_cols=236 Identities=11% Similarity=0.104 Sum_probs=137.3
Q ss_pred CCceeeecccc--ccccceeeeeecccceEEEEECCCCCCCCCEEEEec-CCCcEEEEeCCCCCcccccccCCcccceee
Q 023643 2 CGDSTNWDEDA--YRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS-SDGSITSYSIPSCISKLPLGLSNSKVQQLL 78 (279)
Q Consensus 2 dG~v~iw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 78 (279)
+|.|..|.++. .....+.........-..++++| ++++|+++. .+|.|.++++.......... ...
T Consensus 61 ~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~----~g~~l~vany~~g~v~v~~l~~~g~l~~~~-------~~~ 129 (345)
T PF10282_consen 61 SGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP----DGRFLYVANYGGGSVSVFPLDDDGSLGEVV-------QTV 129 (345)
T ss_dssp TTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT----TSSEEEEEETTTTEEEEEEECTTSEEEEEE-------EEE
T ss_pred CCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec----CCCEEEEEEccCCeEEEEEccCCcccceee-------eec
Confidence 46677776554 33344444443445567899999 888888876 58999999998732111000 000
Q ss_pred e--ccccccccCCccCeEEEEecCCCCceEEEEe-eCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcccc
Q 023643 79 G--IEPDGFLHGHDGPAYDVKFYGGNEDALLLSC-GDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGA 155 (279)
Q Consensus 79 ~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (279)
. +.-...-+.-.....++.|+|+++ ++++. -....|.+|+++..... ..+...+..+...+
T Consensus 130 ~~~g~g~~~~rq~~~h~H~v~~~pdg~--~v~v~dlG~D~v~~~~~~~~~~~----------l~~~~~~~~~~G~G---- 193 (345)
T PF10282_consen 130 RHEGSGPNPDRQEGPHPHQVVFSPDGR--FVYVPDLGADRVYVYDIDDDTGK----------LTPVDSIKVPPGSG---- 193 (345)
T ss_dssp ESEEEESSTTTTSSTCEEEEEE-TTSS--EEEEEETTTTEEEEEEE-TTS-T----------EEEEEEEECSTTSS----
T ss_pred ccCCCCCcccccccccceeEEECCCCC--EEEEEecCCCEEEEEEEeCCCce----------EEEeeccccccCCC----
Confidence 0 000000011223467899999998 55554 34568999998643211 11111111122222
Q ss_pred CCCCCCceeEEEcCCCCeEEEec-CCCeEEEEecC--CCc--EEEEeecC------CcceEEEEEcCCCcEEEEec-CCC
Q 023643 156 LSPVPENNAIAVDPQGGAIFSAA-GDSCAYCWDVE--SSR--IKMVFKGH------SDYLHCIVARNSTNQIVTGS-EDG 223 (279)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~--~~~--~~~~~~~~------~~~i~~i~~~~~~~~l~~~~-~d~ 223 (279)
.+.+.|+|+++++++.. .++.|.++++. ++. .+..+... ......|+++|+|++|.++. ..+
T Consensus 194 ------PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~ 267 (345)
T PF10282_consen 194 ------PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN 267 (345)
T ss_dssp ------EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT
T ss_pred ------CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC
Confidence 37899999999876654 57889999988 442 22222211 12578899999999876654 577
Q ss_pred eEEEEeCC--CCceE--EEecCCccccccCcceeeeEEEEcCCCCEEEEEc-CcceEEeC
Q 023643 224 TARIWDCK--SGKCI--KVIDPVKDKQLKGVISCVSCITLDASESWLVRVR-ATNYVILF 278 (279)
Q Consensus 224 ~i~vwd~~--~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~w 278 (279)
+|.+|++. +++.. ..+ ......-..++++|+|++|+++. .++.|.+|
T Consensus 268 sI~vf~~d~~~g~l~~~~~~--------~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf 319 (345)
T PF10282_consen 268 SISVFDLDPATGTLTLVQTV--------PTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF 319 (345)
T ss_dssp EEEEEEECTTTTTEEEEEEE--------EESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred EEEEEEEecCCCceEEEEEE--------eCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence 89999993 34332 222 11123368899999999998876 45677776
No 248
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.47 E-value=7.4e-12 Score=92.38 Aligned_cols=221 Identities=14% Similarity=0.192 Sum_probs=154.2
Q ss_pred CCceeeec-cccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 2 CGDSTNWD-EDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 2 dG~v~iw~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
|.++|||- .+..+.- ......-+.+++++.+.+ +...|++|-..|++.-+.+...-.. .
T Consensus 45 drtvrv~lkrds~q~w-psI~~~mP~~~~~~~y~~----e~~~L~vg~~ngtvtefs~sedfnk---------------m 104 (404)
T KOG1409|consen 45 DRTVRVWLKRDSGQYW-PSIYHYMPSPCSAMEYVS----ESRRLYVGQDNGTVTEFALSEDFNK---------------M 104 (404)
T ss_pred cceeeeEEeccccccC-chhhhhCCCCceEeeeec----cceEEEEEEecceEEEEEhhhhhhh---------------c
Confidence 66788885 2332210 111122357899999999 8899999999999998887642100 2
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
...+....|..++..+-|+-... .+++.+.|..+.---.+.... . ++. + +..
T Consensus 105 ~~~r~~~~h~~~v~~~if~~~~e--~V~s~~~dk~~~~hc~e~~~~---l----g~Y---~--~~~-------------- 156 (404)
T KOG1409|consen 105 TFLKDYLAHQARVSAIVFSLTHE--WVLSTGKDKQFAWHCTESGNR---L----GGY---N--FET-------------- 156 (404)
T ss_pred chhhhhhhhhcceeeEEecCCce--eEEEeccccceEEEeeccCCc---c----cce---E--eec--------------
Confidence 34456667999999999998777 899999988776333221110 0 000 0 000
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecC--CCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVE--SSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV 238 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 238 (279)
..+++.+.-. +.+.|...|.|.+..+. .-.++.++.+|.+.+++++|.|....|.+|..|..+.+||+--.+...-
T Consensus 157 ~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~ 234 (404)
T KOG1409|consen 157 PASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAY 234 (404)
T ss_pred cCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceee
Confidence 0112222211 56677777777665554 3467888999999999999999999999999999999999975544433
Q ss_pred ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
. +.+|...|..+...+--+.|++++.||.|.+|+
T Consensus 235 e-------l~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 235 E-------LQGHNDKVQALSYAQHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred e-------eccchhhhhhhhhhhhheeeeeccCCCeEEEEe
Confidence 2 168889999998888889999999999999996
No 249
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=1.3e-13 Score=107.96 Aligned_cols=182 Identities=16% Similarity=0.171 Sum_probs=129.6
Q ss_pred eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643 18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK 97 (279)
Q Consensus 18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 97 (279)
+..+.+|.+.|.+++--. +.+-+++++.|.+|++|.+....-. .-+..+..+++.|+.+|.++-
T Consensus 728 L~nf~GH~~~iRai~Aid----NENSFiSASkDKTVKLWSik~EgD~------------~~tsaCQfTY~aHkk~i~~ig 791 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAID----NENSFISASKDKTVKLWSIKPEGDE------------IGTSACQFTYQAHKKPIHDIG 791 (1034)
T ss_pred eecccCcHHHhHHHHhcc----cccceeeccCCceEEEEEeccccCc------------cccceeeeEhhhccCccccee
Confidence 457789999999987776 7888999999999999999863110 000234557788999999999
Q ss_pred ecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC--CCCeEE
Q 023643 98 FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP--QGGAIF 175 (279)
Q Consensus 98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~ 175 (279)
|..+.. +++++ ||-|.+||.--+... ..+.... ..+.+..+..-| +...+.
T Consensus 792 fL~~lr--~i~Sc--D~giHlWDPFigr~L---aq~~dap--------------------k~~a~~~ikcl~nv~~~ili 844 (1034)
T KOG4190|consen 792 FLADLR--SIASC--DGGIHLWDPFIGRLL---AQMEDAP--------------------KEGAGGNIKCLENVDRHILI 844 (1034)
T ss_pred eeeccc--eeeec--cCcceeecccccchh---HhhhcCc--------------------ccCCCceeEecccCcchhee
Confidence 998876 66655 899999996322111 1000000 000122333333 334444
Q ss_pred Ee-cCCCeEEEEecCCCcEEEEeec-----CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCC
Q 023643 176 SA-AGDSCAYCWDVESSRIKMVFKG-----HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPV 242 (279)
Q Consensus 176 ~~-~~d~~i~i~d~~~~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~ 242 (279)
.| +...+|+++|.+..+...+++- ..+.+++++..+.|++++++-.+|.|.+.|.++|+.+..+++-
T Consensus 845 AgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm 917 (1034)
T KOG4190|consen 845 AGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM 917 (1034)
T ss_pred eeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc
Confidence 44 6789999999999887766653 4466899999999999999999999999999999998877643
No 250
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.1e-10 Score=91.46 Aligned_cols=217 Identities=11% Similarity=0.172 Sum_probs=139.4
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEE-----ecCCCcEEEEeCCCCCcccccccCCcccce
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVI-----ASSDGSITSYSIPSCISKLPLGLSNSKVQQ 76 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 76 (279)
.+.+.+|++.+.+ ......|...|..+.++|.. ....+|+ .+.=..++||.+........
T Consensus 145 ~nev~f~~~~~f~---~~~~kl~~~~i~~f~lSpgp--~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~---------- 209 (566)
T KOG2315|consen 145 SNEVQFYDLGSFK---TIQHKLSVSGITMLSLSPGP--EPPFVAVYVPEKKGAPASVRIYKYPEEGQHQP---------- 209 (566)
T ss_pred cceEEEEecCCcc---ceeeeeeccceeeEEecCCC--CCceEEEEccCCCCCCcEEEEeccccccccch----------
Confidence 3567888877732 23445678899999999921 2345555 34556799999873211110
Q ss_pred eeeccccccccCCccCeEEEEecCCCCceEEEEeeC--CC---------cEEEeecCCCccCcceeeeccCcccceEEee
Q 023643 77 LLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGD--DG---------RICGWRWKEFTESKVPINLQGNHVKPVLDLV 145 (279)
Q Consensus 77 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~--dg---------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (279)
...++|. ...=-.+.|++.+.. +|+.++. |. ++++.+++ .......
T Consensus 210 ----~a~ksFF--kadkvqm~WN~~gt~-LLvLastdVDktn~SYYGEq~Lyll~t~---g~s~~V~------------- 266 (566)
T KOG2315|consen 210 ----VANKSFF--KADKVQMKWNKLGTA-LLVLASTDVDKTNASYYGEQTLYLLATQ---GESVSVP------------- 266 (566)
T ss_pred ----hhhcccc--ccceeEEEeccCCce-EEEEEEEeecCCCccccccceEEEEEec---CceEEEe-------------
Confidence 0011111 112235778887773 4433332 22 34444432 0011111
Q ss_pred cCCCCCccccCCCCCCceeEEEcCCCCeEEEe--cCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC--
Q 023643 146 NHQHKGPWGALSPVPENNAIAVDPQGGAIFSA--AGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE-- 221 (279)
Q Consensus 146 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-- 221 (279)
....++|.++.|+|+++.++++ ..=..+.|||++ +.++..| .+++=.++-|+|.|++|+.++.
T Consensus 267 ----------L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGN 333 (566)
T KOG2315|consen 267 ----------LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGN 333 (566)
T ss_pred ----------cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCC
Confidence 1112358999999999877664 456789999987 7777776 4667788999999999988775
Q ss_pred -CCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC------cceEEeCC
Q 023643 222 -DGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA------TNYVILFS 279 (279)
Q Consensus 222 -d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~~wd 279 (279)
-|.+-|||+.+.+++..+.. . .-+-+.|+|||++++|++. |+.++||+
T Consensus 334 L~G~mEvwDv~n~K~i~~~~a--------~--~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 334 LPGDMEVWDVPNRKLIAKFKA--------A--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred CCCceEEEeccchhhcccccc--------C--CceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 67899999999888888743 2 2356789999999998865 67788874
No 251
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.45 E-value=5.9e-11 Score=93.33 Aligned_cols=184 Identities=16% Similarity=0.166 Sum_probs=117.6
Q ss_pred CCEE-EEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEe
Q 023643 41 PDTI-VIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGW 119 (279)
Q Consensus 41 ~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 119 (279)
++++ ++-..+|.|.+.|..+ .+.+..+......-..+.|+|+++ ++++++.||.|.++
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t-------------------~~~~~~i~~~~~~h~~~~~s~Dgr--~~yv~~rdg~vsvi 63 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGAT-------------------NKVVARIPTGGAPHAGLKFSPDGR--YLYVANRDGTVSVI 63 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT--------------------SEEEEEE-STTEEEEEE-TT-SS--EEEEEETTSEEEEE
T ss_pred ccEEEEEecCCCEEEEEECCC-------------------CeEEEEEcCCCCceeEEEecCCCC--EEEEEcCCCeEEEE
Confidence 3455 4566789999999998 566666765444445678999998 88889999999999
Q ss_pred ecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec-CCCeEEEEecCCCcEEEEee
Q 023643 120 RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA-GDSCAYCWDVESSRIKMVFK 198 (279)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~ 198 (279)
|+.+.+ ......... ....++++++|++++++. ..+.+.++|.++.+++..+.
T Consensus 64 D~~~~~---~v~~i~~G~-----------------------~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 64 DLATGK---VVATIKVGG-----------------------NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp ETTSSS---EEEEEE-SS-----------------------EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred ECCccc---EEEEEecCC-----------------------CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence 987543 222222211 136899999999988775 57999999999999998875
Q ss_pred cC-------CcceEEEEEcCCCc-EEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEE-
Q 023643 199 GH-------SDYLHCIVARNSTN-QIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV- 269 (279)
Q Consensus 199 ~~-------~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~- 269 (279)
.. ...+..+..+|... ++++--..+.|-+-|....+.+..-. ...........|+|++++++++
T Consensus 118 ~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~-------i~~g~~~~D~~~dpdgry~~va~ 190 (369)
T PF02239_consen 118 TGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT-------IKVGRFPHDGGFDPDGRYFLVAA 190 (369)
T ss_dssp --EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE-------EE--TTEEEEEE-TTSSEEEEEE
T ss_pred cccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee-------ecccccccccccCcccceeeecc
Confidence 43 34677888888776 55555666888888877655443211 1122345678999999987765
Q ss_pred cCcceEEeC
Q 023643 270 RATNYVILF 278 (279)
Q Consensus 270 ~~d~~i~~w 278 (279)
..++.|.++
T Consensus 191 ~~sn~i~vi 199 (369)
T PF02239_consen 191 NGSNKIAVI 199 (369)
T ss_dssp GGGTEEEEE
T ss_pred cccceeEEE
Confidence 445555544
No 252
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.44 E-value=4.8e-13 Score=117.10 Aligned_cols=177 Identities=16% Similarity=0.281 Sum_probs=136.3
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
||.|++|....++........+. ..|+.+.|+. .|+.+..+..||.+.+|.... +
T Consensus 2229 dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~----qGnk~~i~d~dg~l~l~q~~p--------------------k 2283 (2439)
T KOG1064|consen 2229 DGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNH----QGNKFGIVDGDGDLSLWQASP--------------------K 2283 (2439)
T ss_pred CceEEEEeccCCCeEEEeeccCc-chhhhhhhcc----cCCceeeeccCCceeecccCC--------------------c
Confidence 89999998665543222222333 8899999999 899999999999999999983 5
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEee---CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCG---DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP 158 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (279)
+....+.|......+.|... .+++++ .++.+.+||..-......+. . .|
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~s----~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~----------------------~H 2335 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIGS----LLATAGRSSDNRNVCLWDTLLPPMNSLVH--T----------------------CH 2335 (2439)
T ss_pred ceeccccCCccccceeeeeh----hhhccccCCCCCcccchhcccCcccceee--e----------------------ec
Confidence 56677789999999999873 667665 47889999964321111111 1 22
Q ss_pred CCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE
Q 023643 159 VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV 238 (279)
Q Consensus 159 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 238 (279)
...++++++.|..+.|++|+.+|.|++||++..++++.++. ++ ...++++|+..|.++||++..-..++.
T Consensus 2336 ~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~ 2405 (2439)
T KOG1064|consen 2336 DGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHT 2405 (2439)
T ss_pred CCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhc
Confidence 23479999999999999999999999999998888887764 33 568999999999999999988777777
Q ss_pred ecC
Q 023643 239 IDP 241 (279)
Q Consensus 239 ~~~ 241 (279)
++.
T Consensus 2406 ~p~ 2408 (2439)
T KOG1064|consen 2406 FPS 2408 (2439)
T ss_pred Cch
Confidence 653
No 253
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=1.2e-11 Score=97.27 Aligned_cols=186 Identities=15% Similarity=0.206 Sum_probs=127.0
Q ss_pred CccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeee----------ccCcccceEEeecCC------CCCc
Q 023643 89 HDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINL----------QGNHVKPVLDLVNHQ------HKGP 152 (279)
Q Consensus 89 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~------~~~~ 152 (279)
|....+.|..+|+|+ ..++||-....|++||+.+.. .+....+ .....+.+ .+.+.. ..+.
T Consensus 50 ~p~ast~ik~s~DGq-Y~lAtG~YKP~ikvydlanLS-LKFERhlDae~V~feiLsDD~SK~v-~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQ-YLLATGTYKPQIKVYDLANLS-LKFERHLDAEVVDFEILSDDYSKSV-FLQNDRTIEFHAKYGR 126 (703)
T ss_pred CccccceeEecCCCc-EEEEecccCCceEEEEcccce-eeeeecccccceeEEEeccchhhhe-EeecCceeeehhhcCe
Confidence 677788999999998 456788889999999986531 1111111 11111110 000000 0000
Q ss_pred cccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC
Q 023643 153 WGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS 232 (279)
Q Consensus 153 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~ 232 (279)
.-...-...-..++++.-..-|+.++....|+-+++..|+-+..|....+.++++..++...+|++|+.+|.|..||.++
T Consensus 127 hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 127 HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 00000011234566664444455566667899999999999999998889999999999999999999999999999998
Q ss_pred CceEEEecCCccccccCc-----ceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 233 GKCIKVIDPVKDKQLKGV-----ISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
......+..... +..| ...|+++.|+.+|-.+++|+.+|.+.+||
T Consensus 207 ksrv~~l~~~~~--v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyD 256 (703)
T KOG2321|consen 207 KSRVGTLDAASS--VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYD 256 (703)
T ss_pred hhhheeeecccc--cCCCccccccCcceEEEecCCceeEEeeccCCcEEEEE
Confidence 877777754432 1222 23599999999999999999999999987
No 254
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.43 E-value=3.9e-11 Score=97.23 Aligned_cols=158 Identities=11% Similarity=0.085 Sum_probs=102.7
Q ss_pred ccccCCccCeEEEEecCCCCceEEEEeeCC---CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 84 GFLHGHDGPAYDVKFYGGNEDALLLSCGDD---GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 84 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
..+..+...+....|+|+++ +|+.+..+ ..|++||+.+.... ......+
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~--~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~------------------------- 234 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQ--KLAYVSFESGKPEIYVQDLATGQRE-KVASFPG------------------------- 234 (417)
T ss_pred EEeecCCCceecccCCCCCC--EEEEEEcCCCCcEEEEEECCCCCEE-EeecCCC-------------------------
Confidence 34445666788999999998 77766543 47999998643110 0000100
Q ss_pred CceeEEEcCCCCeEEE-ecCC--CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC-CC--eEEEEeCCCCc
Q 023643 161 ENNAIAVDPQGGAIFS-AAGD--SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE-DG--TARIWDCKSGK 234 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~-~~~d--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~vwd~~~~~ 234 (279)
.+.+++|+|+++.|+. .+.+ ..|++||+.+++... +..+........|+|++++|+..+. ++ .|.++|+.+++
T Consensus 235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~ 313 (417)
T TIGR02800 235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE 313 (417)
T ss_pred CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 1356899999987754 4444 358999998775543 3334444556789999998876554 33 58888887766
Q ss_pred eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcc---eEEeCC
Q 023643 235 CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATN---YVILFS 279 (279)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~~wd 279 (279)
.. .+ ..+...+..+.|+|++++|+.++.++ .|.+||
T Consensus 314 ~~-~l--------~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d 352 (417)
T TIGR02800 314 VR-RL--------TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMD 352 (417)
T ss_pred EE-Ee--------ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEe
Confidence 43 33 22334566789999999998887665 565553
No 255
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.43 E-value=9.2e-11 Score=83.99 Aligned_cols=221 Identities=11% Similarity=0.001 Sum_probs=141.3
Q ss_pred CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccc
Q 023643 3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEP 82 (279)
Q Consensus 3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (279)
|...+|...+.+ ..++.-..|...|+-+.-..+ ....+..++.|.++++.++....
T Consensus 94 g~fd~~~~~tn~-~h~~~cd~snn~v~~~~r~cd---~~~~~~i~sndht~k~~~~~~~s-------------------- 149 (344)
T KOG4532|consen 94 GQFDLFACNTND-GHLYQCDVSNNDVTLVKRYCD---LKFPLNIASNDHTGKTMVVSGDS-------------------- 149 (344)
T ss_pred ceeeeecccCcc-cceeeecccccchhhhhhhcc---cccceeeccCCcceeEEEEecCc--------------------
Confidence 455666655443 223333334443332221111 33456677888888888887531
Q ss_pred cccccCCccC--eEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 83 DGFLHGHDGP--AYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 83 ~~~~~~h~~~--v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
. .+..|... +.++.+++++. ++++.+....|..|.++...+........... +
T Consensus 150 ~-~~~~h~~~~~~ns~~~snd~~--~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~----------D------------ 204 (344)
T KOG4532|consen 150 N-KFAVHNQNLTQNSLHYSNDPS--WGSSVGDSRRVFRYAIDDESEYIENIYEAPTS----------D------------ 204 (344)
T ss_pred c-cceeeccccceeeeEEcCCCc--eEEEecCCCcceEEEeCCccceeeeeEecccC----------C------------
Confidence 1 11223333 78899999998 99999999999999987543222211111111 0
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEE-----eecCCcceEEEEEcCCC--cEEEEecCCCeEEEEeCCCC
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMV-----FKGHSDYLHCIVARNST--NQIVTGSEDGTARIWDCKSG 233 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-----~~~~~~~i~~i~~~~~~--~~l~~~~~d~~i~vwd~~~~ 233 (279)
.-.+.+|+.....+|++..||++.|||++....... -..|.+.++.+.|++-| .+|+..-.=+.+.+-|+|++
T Consensus 205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred CceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 125788999999999999999999999997543322 23488999999999855 34555555678999999999
Q ss_pred ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643 234 KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT 272 (279)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 272 (279)
+..+.+..............|..-.|+.++.-+.+.+++
T Consensus 285 ~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 285 VNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred ceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 887777655443333333448888888777665555443
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=1.1e-10 Score=94.06 Aligned_cols=202 Identities=13% Similarity=0.052 Sum_probs=114.3
Q ss_pred eeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecC-CC----cEEEEeCCCCCcccccccCCcccceeee
Q 023643 5 STNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASS-DG----SITSYSIPSCISKLPLGLSNSKVQQLLG 79 (279)
Q Consensus 5 v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 79 (279)
|.+.++++++...+..+ .+.....+|+| ||+.||..+. +| .+.+|++..+..
T Consensus 213 I~~~~l~~g~~~~lt~~---~g~~~~p~wSP----DG~~Laf~s~~~g~~di~~~~~~~~~g~~---------------- 269 (428)
T PRK01029 213 IFLGSLENPAGKKILAL---QGNQLMPTFSP----RKKLLAFISDRYGNPDLFIQSFSLETGAI---------------- 269 (428)
T ss_pred EEEEECCCCCceEeecC---CCCccceEECC----CCCEEEEEECCCCCcceeEEEeecccCCC----------------
Confidence 34445555443333333 34455689999 8988876542 23 233466554210
Q ss_pred ccccccccCCccCeEEEEecCCCCceEEEEee-CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643 80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCG-DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP 158 (279)
Q Consensus 80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (279)
+.+......+.+.....+|+|+++ .|+..+ .+|...+|.+...........+....
T Consensus 270 g~~~~lt~~~~~~~~~p~wSPDG~--~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~--------------------- 326 (428)
T PRK01029 270 GKPRRLLNEAFGTQGNPSFSPDGT--RLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY--------------------- 326 (428)
T ss_pred CcceEeecCCCCCcCCeEECCCCC--EEEEEECCCCCceEEEEECcccccceEEeccCC---------------------
Confidence 111222222223345679999998 666554 56766666543211111111111000
Q ss_pred CCCceeEEEcCCCCeEEEecCC---CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC---CCeEEEEeCCC
Q 023643 159 VPENNAIAVDPQGGAIFSAAGD---SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE---DGTARIWDCKS 232 (279)
Q Consensus 159 ~~~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---d~~i~vwd~~~ 232 (279)
..+....|+|+|+.|+..+.+ ..|.+||+.+++...... ....+....|+|+|+.|+.... ...|.++|+..
T Consensus 327 -~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 327 -RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred -CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 024577899999988765443 479999999887654332 3345677899999998775432 35688999987
Q ss_pred CceEEEecCCccccccCcceeeeEEEEcCCC
Q 023643 233 GKCIKVIDPVKDKQLKGVISCVSCITLDASE 263 (279)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 263 (279)
++...... ....+...+|+|-.
T Consensus 405 g~~~~Lt~---------~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 405 KKTRKIVI---------GSGEKRFPSWGAFP 426 (428)
T ss_pred CCEEEeec---------CCCcccCceecCCC
Confidence 76554431 22345567787743
No 257
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.40 E-value=8.5e-10 Score=85.15 Aligned_cols=239 Identities=13% Similarity=0.050 Sum_probs=137.8
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecC----------CCcEEEEeCCCCCcccccccCC
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASS----------DGSITSYSIPSCISKLPLGLSN 71 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~ 71 (279)
.|.|.+.|.++.+ .+..+..-..+- .+ ++| |++.|.++.. +..|.+||..+.
T Consensus 26 ~~~v~ViD~~~~~--v~g~i~~G~~P~-~~-~sp----Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~---------- 87 (352)
T TIGR02658 26 TTQVYTIDGEAGR--VLGMTDGGFLPN-PV-VAS----DGSFFAHASTVYSRIARGKRTDYVEVIDPQTH---------- 87 (352)
T ss_pred CceEEEEECCCCE--EEEEEEccCCCc-ee-ECC----CCCEEEEEeccccccccCCCCCEEEEEECccC----------
Confidence 4778888877753 344444322222 24 899 8887777655 789999999994
Q ss_pred cccceeeeccccccccCC-------ccCeEEEEecCCCCceEEEEee-C-CCcEEEeecCCCccCcceeeeccCcccc--
Q 023643 72 SKVQQLLGIEPDGFLHGH-------DGPAYDVKFYGGNEDALLLSCG-D-DGRICGWRWKEFTESKVPINLQGNHVKP-- 140 (279)
Q Consensus 72 ~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~l~s~~-~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~-- 140 (279)
+.+..+.-- ......+.++|+++ +|+... . +..|.+.|+...+....+....+...-+
T Consensus 88 ---------~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk--~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~ 156 (352)
T TIGR02658 88 ---------LPIADIELPEGPRFLVGTYPWMTSLTPDNK--TLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTA 156 (352)
T ss_pred ---------cEEeEEccCCCchhhccCccceEEECCCCC--EEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEec
Confidence 333333211 12234688999998 666554 3 7899999987543222111111100000
Q ss_pred -----eEEe-------ecCC-C---CCccccCCC-CCCc-eeEEEcC-CCCeEEEecCCCeEEEEecCCC-----cEEEE
Q 023643 141 -----VLDL-------VNHQ-H---KGPWGALSP-VPEN-NAIAVDP-QGGAIFSAAGDSCAYCWDVESS-----RIKMV 196 (279)
Q Consensus 141 -----~~~~-------~~~~-~---~~~~~~~~~-~~~i-~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~-----~~~~~ 196 (279)
+.+. .... . ......+.. ...+ ..-.|.+ ++.++++... |.|.+.|+... +....
T Consensus 157 e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~ 235 (352)
T TIGR02658 157 NDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEA 235 (352)
T ss_pred CCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeee
Confidence 0000 0000 0 000000000 0000 0003344 7877777666 99999996432 33332
Q ss_pred eec-------CCcceEEEEEcCCCcEEEEec----------CCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEE
Q 023643 197 FKG-------HSDYLHCIVARNSTNQIVTGS----------EDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITL 259 (279)
Q Consensus 197 ~~~-------~~~~i~~i~~~~~~~~l~~~~----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 259 (279)
+.. ..+.+.-++++|+++.+.... ..+.|.++|..+++.+..+.. + ..+..+++
T Consensus 236 ~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-------G--~~~~~iav 306 (352)
T TIGR02658 236 FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-------G--HEIDSINV 306 (352)
T ss_pred ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-------C--CceeeEEE
Confidence 221 223344599999988877642 235799999999999999852 2 36789999
Q ss_pred cCCCC-EEEEEc-CcceEEeCC
Q 023643 260 DASES-WLVRVR-ATNYVILFS 279 (279)
Q Consensus 260 ~~~~~-~l~~~~-~d~~i~~wd 279 (279)
+||++ +|++.. .++.|.++|
T Consensus 307 S~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 307 SQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred CCCCCeEEEEeCCCCCcEEEEE
Confidence 99999 887666 567787765
No 258
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.39 E-value=1.8e-10 Score=88.92 Aligned_cols=207 Identities=14% Similarity=0.113 Sum_probs=144.9
Q ss_pred CCCceeeeccccccccceeee-eec--------ccceEEEE-ECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccC
Q 023643 1 MCGDSTNWDEDAYRKSILKER-EIL--------TRTVFRTV-WGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLS 70 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~-~~~--------~~~v~~~~-~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 70 (279)
+-|+|.+||+++...+.+..- ... ..+..-+. |++. +|++++..+. |+..|.+...+
T Consensus 285 ~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~---~Gd~ia~VSR-GkaFi~~~~~~--------- 351 (668)
T COG4946 285 NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVV---NGDYIALVSR-GKAFIMRPWDG--------- 351 (668)
T ss_pred cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccC---CCcEEEEEec-CcEEEECCCCC---------
Confidence 358899999887654333211 111 11111222 5553 7899988876 67777776642
Q ss_pred CcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCC-cEEEeecCCCccCcceeeeccCcccceEEeecCCC
Q 023643 71 NSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDG-RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQH 149 (279)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (279)
.. .--+|.+.|.-..+..+.+ -++.|..|| .+-|+|.+...... +....
T Consensus 352 -----------~~-iqv~~~~~VrY~r~~~~~e--~~vigt~dgD~l~iyd~~~~e~kr-~e~~l--------------- 401 (668)
T COG4946 352 -----------YS-IQVGKKGGVRYRRIQVDPE--GDVIGTNDGDKLGIYDKDGGEVKR-IEKDL--------------- 401 (668)
T ss_pred -----------ee-EEcCCCCceEEEEEccCCc--ceEEeccCCceEEEEecCCceEEE-eeCCc---------------
Confidence 11 1124677788888887776 788899999 89999976532111 11111
Q ss_pred CCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCe----E
Q 023643 150 KGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT----A 225 (279)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~----i 225 (279)
+.|.++..+|+|+.++++.....|-+.|++++.....=+...+-|+.+.|+|+++++|-+-.+|. |
T Consensus 402 ----------g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~I 471 (668)
T COG4946 402 ----------GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSI 471 (668)
T ss_pred ----------cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeE
Confidence 12789999999999999999999999999999887777777888999999999999998877764 8
Q ss_pred EEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEE
Q 023643 226 RIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV 269 (279)
Q Consensus 226 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 269 (279)
+++|+..++......+ .++ =.+-+|+|++++|.--
T Consensus 472 klydm~~~Kiy~vTT~------ta~---DfsPaFD~d~ryLYfL 506 (668)
T COG4946 472 KLYDMDGGKIYDVTTP------TAY---DFSPAFDPDGRYLYFL 506 (668)
T ss_pred EEEecCCCeEEEecCC------ccc---ccCcccCCCCcEEEEE
Confidence 9999998887665432 222 2456899999887643
No 259
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.39 E-value=1.6e-11 Score=89.66 Aligned_cols=235 Identities=12% Similarity=0.143 Sum_probs=145.6
Q ss_pred ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCC------------ccC
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGH------------DGP 92 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h------------~~~ 92 (279)
...|+++.|.. .|.+|++|...|.|.+|.-+... -.. .+....+++| ...
T Consensus 26 ad~ItaVefd~----tg~YlatGDkgGRVvlfer~~s~-~ce-------------ykf~teFQshe~EFDYLkSleieEK 87 (460)
T COG5170 26 ADKITAVEFDE----TGLYLATGDKGGRVVLFEREKSY-GCE-------------YKFFTEFQSHELEFDYLKSLEIEEK 87 (460)
T ss_pred cceeeEEEecc----ccceEeecCCCceEEEeeccccc-ccc-------------hhhhhhhcccccchhhhhhccHHHH
Confidence 46799999999 89999999999999999876421 000 1112223333 346
Q ss_pred eEEEEecCCCCceEEEEeeCCCcEEEeecCCCccC-----cceeeeccCcccceEEe------ecCCCC-------Cccc
Q 023643 93 AYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTES-----KVPINLQGNHVKPVLDL------VNHQHK-------GPWG 154 (279)
Q Consensus 93 v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~-----~~~~~~~~~~~~~~~~~------~~~~~~-------~~~~ 154 (279)
|..+.|..++....++..+.|.+|++|.+...... .....+......++... ....+. ...-
T Consensus 88 in~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvy 167 (460)
T COG5170 88 INAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVY 167 (460)
T ss_pred hhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceec
Confidence 88899987765567777888999999998653110 00000000001111100 000110 0011
Q ss_pred cCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCc---EEEEeecCC-----cceEEEEEcCC-CcEEEEecCCCeE
Q 023643 155 ALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSR---IKMVFKGHS-----DYLHCIVARNS-TNQIVTGSEDGTA 225 (279)
Q Consensus 155 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~-----~~i~~i~~~~~-~~~l~~~~~d~~i 225 (279)
...|..-|++++|+.+...++++. |-.|.+|++.-.. .+-.++.|. .-|++..|+|. .+.+.-.+..|.|
T Consensus 168 aNaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I 246 (460)
T COG5170 168 ANAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEI 246 (460)
T ss_pred cccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence 123344588999999888777654 7889999987432 222334443 35788899995 6777778889999
Q ss_pred EEEeCCCCce--------EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 226 RIWDCKSGKC--------IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 226 ~vwd~~~~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
++-|+|...+ ...+.+.....+.+-...|..+.|+++|+++++-+. -+|.+||
T Consensus 247 kl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwD 307 (460)
T COG5170 247 KLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWD 307 (460)
T ss_pred EehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEe
Confidence 9999984321 111222222233444567889999999999988754 5789987
No 260
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.38 E-value=2.2e-09 Score=84.47 Aligned_cols=241 Identities=12% Similarity=0.183 Sum_probs=138.1
Q ss_pred Cceeeeccc--cccccceeeeeecccceEEEEECCCCCCCCCEEEEecC----CCcEEEEeCCCCCcccccccCCcccce
Q 023643 3 GDSTNWDED--AYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASS----DGSITSYSIPSCISKLPLGLSNSKVQQ 76 (279)
Q Consensus 3 G~v~iw~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~ 76 (279)
+.|.+|+++ +.....+... .-......++++| ++++|.+... +|.|..|.+......
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~----~~~~LY~~~e~~~~~g~v~~~~i~~~~g~------------ 75 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSP----DGRRLYVVNEGSGDSGGVSSYRIDPDTGT------------ 75 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-T----TSSEEEEEETTSSTTTEEEEEEEETTTTE------------
T ss_pred CcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEe----CCCEEEEEEccccCCCCEEEEEECCCcce------------
Confidence 567777763 3333333332 2345566789999 7888877755 578999988763100
Q ss_pred eeeccccccccCCccCeEEEEecCCCCceEEEEee-CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcccc
Q 023643 77 LLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCG-DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGA 155 (279)
Q Consensus 77 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (279)
.+.+............++++|++. +|+++. .+|+|.+++++.............+. ..++-..
T Consensus 76 ---L~~~~~~~~~g~~p~~i~~~~~g~--~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~-----------g~g~~~~ 139 (345)
T PF10282_consen 76 ---LTLLNSVPSGGSSPCHIAVDPDGR--FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHE-----------GSGPNPD 139 (345)
T ss_dssp ---EEEEEEEEESSSCEEEEEECTTSS--EEEEEETTTTEEEEEEECTTSEEEEEEEEEESE-----------EEESSTT
T ss_pred ---eEEeeeeccCCCCcEEEEEecCCC--EEEEEEccCCeEEEEEccCCcccceeeeecccC-----------CCCCccc
Confidence 122222222333456789999998 666654 69999999987532111111110000 0000001
Q ss_pred CCCCCCceeEEEcCCCCeEEEec-CCCeEEEEecCCCc--EE--EEee-cCCcceEEEEEcCCCcEE-EEecCCCeEEEE
Q 023643 156 LSPVPENNAIAVDPQGGAIFSAA-GDSCAYCWDVESSR--IK--MVFK-GHSDYLHCIVARNSTNQI-VTGSEDGTARIW 228 (279)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~--~~--~~~~-~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vw 228 (279)
........++.++|+++++++.. ....|.+|++.... +. ..+. ......+.++|+|+++++ ++.-.++.|.++
T Consensus 140 rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~ 219 (345)
T PF10282_consen 140 RQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVF 219 (345)
T ss_dssp TTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred ccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEE
Confidence 11112367899999999887754 34579999997654 32 2232 234567999999998876 455568889999
Q ss_pred eCC--CCc--eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEc-CcceEEeC
Q 023643 229 DCK--SGK--CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR-ATNYVILF 278 (279)
Q Consensus 229 d~~--~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~w 278 (279)
++. .++ .+..+..... ... .......++++|||++|+++. ..+.|.+|
T Consensus 220 ~~~~~~g~~~~~~~~~~~~~-~~~-~~~~~~~i~ispdg~~lyvsnr~~~sI~vf 272 (345)
T PF10282_consen 220 DYDPSDGSLTEIQTISTLPE-GFT-GENAPAEIAISPDGRFLYVSNRGSNSISVF 272 (345)
T ss_dssp EEETTTTEEEEEEEEESCET-TSC-SSSSEEEEEE-TTSSEEEEEECTTTEEEEE
T ss_pred eecccCCceeEEEEeeeccc-ccc-ccCCceeEEEecCCCEEEEEeccCCEEEEE
Confidence 988 443 2223321110 011 112578899999999988764 45667665
No 261
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.36 E-value=1.9e-11 Score=89.32 Aligned_cols=229 Identities=15% Similarity=0.185 Sum_probs=141.9
Q ss_pred cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccc--------ccccCCc---------------ccceeeeccc
Q 023643 26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKL--------PLGLSNS---------------KVQQLLGIEP 82 (279)
Q Consensus 26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--------~~~~~~~---------------~~~~~~~~~~ 82 (279)
..|..+.|... .....++..+.|.+|++|.+....... .+..... ..+.++...+
T Consensus 86 EKin~I~w~~~--t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p 163 (460)
T COG5170 86 EKINAIEWFDD--TGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKP 163 (460)
T ss_pred HHhhheeeecC--CCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecc
Confidence 56788888763 133456677899999999997642221 1111111 1122333444
Q ss_pred cccc-cCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 83 DGFL-HGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 83 ~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
.+.. ..|.--+++++|..+.+ .++++ .|=.|.+|+++-......+...+.+....+..+
T Consensus 164 ~rvyaNaH~yhiNSiS~NsD~e--t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteV----------------- 223 (460)
T COG5170 164 CRVYANAHPYHINSISFNSDKE--TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEV----------------- 223 (460)
T ss_pred ceeccccceeEeeeeeecCchh--eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHH-----------------
Confidence 4444 45778899999999886 66665 478899999875444444444444443332221
Q ss_pred ceeEEEcCCCC-eEEEecCCCeEEEEecCCCcEE------EE----------eecCCcceEEEEEcCCCcEEEEecCCCe
Q 023643 162 NNAIAVDPQGG-AIFSAAGDSCAYCWDVESSRIK------MV----------FKGHSDYLHCIVARNSTNQIVTGSEDGT 224 (279)
Q Consensus 162 i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~------~~----------~~~~~~~i~~i~~~~~~~~l~~~~~d~~ 224 (279)
|++..|+|... .+.-.+..|.|++-|+++..+. .. |.+-...|..+.|+++|+++++-+. -+
T Consensus 224 ItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-lt 302 (460)
T COG5170 224 ITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LT 302 (460)
T ss_pred HhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ce
Confidence 67888998544 4555667899999999853211 11 1122346788999999999998754 46
Q ss_pred EEEEeCCC-CceEEEecCCcccc--c---c--CcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643 225 ARIWDCKS-GKCIKVIDPVKDKQ--L---K--GVISCVSCITLDASESWLVRVRATNYVIL 277 (279)
Q Consensus 225 i~vwd~~~-~~~~~~~~~~~~~~--~---~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 277 (279)
|++||.+. ..++.+++.+.... + . .---.-..+.|+.|...+++|+..+..-+
T Consensus 303 vkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgi 363 (460)
T COG5170 303 VKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGI 363 (460)
T ss_pred EEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceee
Confidence 99999975 45777775543210 0 0 00012245678888888888887665444
No 262
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.32 E-value=7.7e-11 Score=87.16 Aligned_cols=232 Identities=15% Similarity=0.167 Sum_probs=137.6
Q ss_pred ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccccc---------------ccCCcccceeee--
Q 023643 17 ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPL---------------GLSNSKVQQLLG-- 79 (279)
Q Consensus 17 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---------------~~~~~~~~~~~~-- 79 (279)
.++....|...|..+-|+. ....+++.+.|..+.---.+.+.....+ .+......++..
T Consensus 106 ~~r~~~~h~~~v~~~if~~----~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr 181 (404)
T KOG1409|consen 106 FLKDYLAHQARVSAIVFSL----THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLK 181 (404)
T ss_pred hhhhhhhhhcceeeEEecC----CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEE
Confidence 3456667899999999998 7888999988876643222322222111 111111111111
Q ss_pred -----ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccc
Q 023643 80 -----IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWG 154 (279)
Q Consensus 80 -----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (279)
..++.++.+|.+++.+++|.|... .|.+|..|..+.+||+-- .......+.++..
T Consensus 182 ~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~--~LfSg~~d~~vi~wdigg--~~g~~~el~gh~~---------------- 241 (404)
T KOG1409|consen 182 LEQNGCQLITTFNGHTGEVTCLKWDPGQR--LLFSGASDHSVIMWDIGG--RKGTAYELQGHND---------------- 241 (404)
T ss_pred EeecCCceEEEEcCcccceEEEEEcCCCc--EEEeccccCceEEEeccC--Ccceeeeeccchh----------------
Confidence 456678889999999999999887 999999999999999842 2222233333221
Q ss_pred cCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEE-----------------------------eec----CC
Q 023643 155 ALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMV-----------------------------FKG----HS 201 (279)
Q Consensus 155 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-----------------------------~~~----~~ 201 (279)
.|..+...+.-+.+++++.||.|.+||....+.... ++. +.
T Consensus 242 ------kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkc 315 (404)
T KOG1409|consen 242 ------KVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKC 315 (404)
T ss_pred ------hhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 255666666667899999999999999874322110 000 11
Q ss_pred cceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 202 DYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 202 ~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+...|...+.......+-+..-.+|+-|.-... ++.......+.+..-...|+.+.+...-.+|+|++.|..|++||
T Consensus 316 g~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~-i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd 392 (404)
T KOG1409|consen 316 GKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPT-IKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWD 392 (404)
T ss_pred hhhcCcccccCccccccccceeEEEEecccchh-hhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEe
Confidence 112222222222223333444455555432111 11111100011122335689999988888999999999999998
No 263
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=9.1e-10 Score=89.53 Aligned_cols=150 Identities=17% Similarity=0.129 Sum_probs=96.0
Q ss_pred ccccCCccCeEEEEecCCCCceEEEEeeCC---CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 84 GFLHGHDGPAYDVKFYGGNEDALLLSCGDD---GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 84 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
..+..+...+....|+|+++ .|+..+.+ ..|.+|++.+.... ......+
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~--~la~~s~~~~~~~l~~~~l~~g~~~-~l~~~~g------------------------- 243 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGK--RIAYVSFEQKRPRIFVQNLDTGRRE-QITNFEG------------------------- 243 (430)
T ss_pred eEEecCCCceeeeeECCCCC--EEEEEEcCCCCCEEEEEECCCCCEE-EccCCCC-------------------------
Confidence 34445667889999999998 77665533 35888887643211 1111111
Q ss_pred CceeEEEcCCCCeEE-EecCCC--eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC-CC--eEEEEeCCCCc
Q 023643 161 ENNAIAVDPQGGAIF-SAAGDS--CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE-DG--TARIWDCKSGK 234 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~vwd~~~~~ 234 (279)
.+....|+|+|+.|+ +...++ .|++||+.+++... +..+........|+|+|+.|+..+. ++ .|+++|+.+++
T Consensus 244 ~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~ 322 (430)
T PRK00178 244 LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR 322 (430)
T ss_pred CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 134679999999776 444444 68899998876543 4445555667889999988766553 33 57778887776
Q ss_pred eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643 235 CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA 271 (279)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 271 (279)
...... .+ .......|+|+|++|+..+.
T Consensus 323 ~~~lt~-------~~--~~~~~~~~Spdg~~i~~~~~ 350 (430)
T PRK00178 323 AERVTF-------VG--NYNARPRLSADGKTLVMVHR 350 (430)
T ss_pred EEEeec-------CC--CCccceEECCCCCEEEEEEc
Confidence 543321 11 12245689999999887654
No 264
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.31 E-value=3.3e-09 Score=94.13 Aligned_cols=233 Identities=12% Similarity=0.137 Sum_probs=132.3
Q ss_pred eEEEEECCCCCCCCCEEEEe-cCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceE
Q 023643 28 VFRTVWGPSKDGSPDTIVIA-SSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDAL 106 (279)
Q Consensus 28 v~~~~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 106 (279)
-..+++.+ +++.|.++ ...+.|+++|+.+..... +.-.. .......+........ -.....++++|++. .+
T Consensus 626 P~GIavd~----~gn~LYVaDt~n~~Ir~id~~~~~V~t-lag~G-~~g~~~~gg~~~~~~~-ln~P~gVa~dp~~g-~L 697 (1057)
T PLN02919 626 PQGLAYNA----KKNLLYVADTENHALREIDFVNETVRT-LAGNG-TKGSDYQGGKKGTSQV-LNSPWDVCFEPVNE-KV 697 (1057)
T ss_pred CcEEEEeC----CCCEEEEEeCCCceEEEEecCCCEEEE-EeccC-cccCCCCCChhhhHhh-cCCCeEEEEecCCC-eE
Confidence 47788988 67755554 456789999987632111 00000 0000000000000000 11235789999443 27
Q ss_pred EEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEE-EecCCCeEEE
Q 023643 107 LLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF-SAAGDSCAYC 185 (279)
Q Consensus 107 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i 185 (279)
+++.+.++.|++||..+.. ...+.+..... ...... ...........++++|++..|+ +-+.++.|++
T Consensus 698 yVad~~~~~I~v~d~~~g~----v~~~~G~G~~~----~~~g~~---~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv 766 (1057)
T PLN02919 698 YIAMAGQHQIWEYNISDGV----TRVFSGDGYER----NLNGSS---GTSTSFAQPSGISLSPDLKELYIADSESSSIRA 766 (1057)
T ss_pred EEEECCCCeEEEEECCCCe----EEEEecCCccc----cCCCCc---cccccccCccEEEEeCCCCEEEEEECCCCeEEE
Confidence 7788888999999975431 11111110000 000000 0000112347899999998555 4556789999
Q ss_pred EecCCCcEEEEeec-------------C--------CcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCc-
Q 023643 186 WDVESSRIKMVFKG-------------H--------SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVK- 243 (279)
Q Consensus 186 ~d~~~~~~~~~~~~-------------~--------~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~- 243 (279)
||+.++.......+ . -.....++++++|+.+++-+.++.|++||..++..........
T Consensus 767 ~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~ 846 (1057)
T PLN02919 767 LDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKA 846 (1057)
T ss_pred EECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCc
Confidence 99987653211100 0 1134689999999999999999999999998776554331100
Q ss_pred ----cccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 244 ----DKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 244 ----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.....+.-.....++++++|+.+++-+.++.|++||
T Consensus 847 G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 847 GFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred CCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 000112223567899999999999999999999986
No 265
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.30 E-value=1.4e-10 Score=87.39 Aligned_cols=164 Identities=17% Similarity=0.151 Sum_probs=107.6
Q ss_pred EEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEE
Q 023643 29 FRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLL 108 (279)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 108 (279)
..+..+| ++.++|++..+....++++...... .+...... -...-+++.|..+.. ...
T Consensus 66 ~~~~~s~----~~~llAv~~~~K~~~~f~~~~~~~~---------------~kl~~~~~-v~~~~~ai~~~~~~~--sv~ 123 (390)
T KOG3914|consen 66 ALVLTSD----SGRLVAVATSSKQRAVFDYRENPKG---------------AKLLDVSC-VPKRPTAISFIREDT--SVL 123 (390)
T ss_pred cccccCC----CceEEEEEeCCCceEEEEEecCCCc---------------ceeeeEee-cccCcceeeeeeccc--eEE
Confidence 3344566 8899999999888888888763210 01111111 112234445554444 333
Q ss_pred EeeC---CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEE
Q 023643 109 SCGD---DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYC 185 (279)
Q Consensus 109 s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 185 (279)
.+.. ...+.+|.... ...... +.|...++.++|+||++.++++..|..|++
T Consensus 124 v~dkagD~~~~di~s~~~----~~~~~~----------------------lGhvSml~dVavS~D~~~IitaDRDEkIRv 177 (390)
T KOG3914|consen 124 VADKAGDVYSFDILSADS----GRCEPI----------------------LGHVSMLLDVAVSPDDQFIITADRDEKIRV 177 (390)
T ss_pred EEeecCCceeeeeecccc----cCcchh----------------------hhhhhhhheeeecCCCCEEEEecCCceEEE
Confidence 3333 33444444321 111111 122234789999999999999999999999
Q ss_pred EecCCCcEEEEee-cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 186 WDVESSRIKMVFK-GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 186 ~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
-....-..+..|. ||...|..++.-+ +..|+++|.|++|++||+++|+++.+++.
T Consensus 178 s~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 178 SRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred EecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEEecccCCcccccch
Confidence 8877666666654 6999999999865 46699999999999999999999877653
No 266
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.28 E-value=2.6e-08 Score=74.65 Aligned_cols=236 Identities=8% Similarity=0.093 Sum_probs=141.8
Q ss_pred CCceeeeccccccc-cceeeeeecccceEEEEECCCCCCCCCEEEEecC---CCcEEEEeCCCCCcccccccCCccccee
Q 023643 2 CGDSTNWDEDAYRK-SILKEREILTRTVFRTVWGPSKDGSPDTIVIASS---DGSITSYSIPSCISKLPLGLSNSKVQQL 77 (279)
Q Consensus 2 dG~v~iw~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 77 (279)
+.-|++|++++..- ......-.+.+..+-|+|+| +.+.|.++.. +|.|-.|.++.....
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~----~~~~LY~v~~~~~~ggvaay~iD~~~G~------------- 77 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP----DQRHLYVVNEPGEEGGVAAYRIDPDDGR------------- 77 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECC----CCCEEEEEEecCCcCcEEEEEEcCCCCe-------------
Confidence 45688998874431 11223344667889999999 8888877654 577888877752111
Q ss_pred eeccccccccCCccCeEEEEecCCCCceEEEEe-eCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643 78 LGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSC-GDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL 156 (279)
Q Consensus 78 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (279)
...+.....-..+-.-++++++++ +++++ ...|.|.++-++.............+ ...++- ..
T Consensus 78 --Lt~ln~~~~~g~~p~yvsvd~~g~--~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h-----------~g~~p~-~r 141 (346)
T COG2706 78 --LTFLNRQTLPGSPPCYVSVDEDGR--FVFVANYHSGSVSVYPLQADGSLQPVVQVVKH-----------TGSGPH-ER 141 (346)
T ss_pred --EEEeeccccCCCCCeEEEECCCCC--EEEEEEccCceEEEEEcccCCccccceeeeec-----------CCCCCC-cc
Confidence 011111111223337899999998 66655 45789999998654222222111111 111111 11
Q ss_pred CCCCCceeEEEcCCCCeEEEecC-CCeEEEEecCCCcEEEEee---cCCcceEEEEEcCCCcEEEEec-CCCeEEEEeCC
Q 023643 157 SPVPENNAIAVDPQGGAIFSAAG-DSCAYCWDVESSRIKMVFK---GHSDYLHCIVARNSTNQIVTGS-EDGTARIWDCK 231 (279)
Q Consensus 157 ~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~ 231 (279)
.....+....+.|++++|++..- --.|.+|++..+++...-. ......+.|.|+|++++....+ .+++|-+|...
T Consensus 142 Q~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~ 221 (346)
T COG2706 142 QESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYN 221 (346)
T ss_pred ccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEc
Confidence 11112678899999999888654 3569999999775433211 2345679999999999876555 59999999987
Q ss_pred CC-ceEEEecCCc--cccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643 232 SG-KCIKVIDPVK--DKQLKGVISCVSCITLDASESWLVRVRA 271 (279)
Q Consensus 232 ~~-~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 271 (279)
.. ..+..++... ...+. -..+..++..+|||++|.++..
T Consensus 222 ~~~g~~~~lQ~i~tlP~dF~-g~~~~aaIhis~dGrFLYasNR 263 (346)
T COG2706 222 PAVGKFEELQTIDTLPEDFT-GTNWAAAIHISPDGRFLYASNR 263 (346)
T ss_pred CCCceEEEeeeeccCccccC-CCCceeEEEECCCCCEEEEecC
Confidence 63 2222222111 01111 2345678889999999988743
No 267
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.27 E-value=1.8e-09 Score=77.52 Aligned_cols=176 Identities=11% Similarity=-0.026 Sum_probs=115.0
Q ss_pred CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEe
Q 023643 40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGW 119 (279)
Q Consensus 40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 119 (279)
...+||.|+..|...+|.+.+.. ..+.....|...|+-+.=.-+.. ..+.-++.|.++++.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~------------------~h~~~cd~snn~v~~~~r~cd~~-~~~~i~sndht~k~~ 143 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTND------------------GHLYQCDVSNNDVTLVKRYCDLK-FPLNIASNDHTGKTM 143 (344)
T ss_pred cccEEEeccccceeeeecccCcc------------------cceeeecccccchhhhhhhcccc-cceeeccCCcceeEE
Confidence 34689999999999999998742 11222222333222211111111 156777889999999
Q ss_pred ecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCC-cE-EE-E
Q 023643 120 RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS-RI-KM-V 196 (279)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~-~~-~ 196 (279)
+++-........... + .+.+++++++++++++.+....|-.|.+... +. ++ .
T Consensus 144 ~~~~~s~~~~~h~~~------~-------------------~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~ 198 (344)
T KOG4532|consen 144 VVSGDSNKFAVHNQN------L-------------------TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIY 198 (344)
T ss_pred EEecCcccceeeccc------c-------------------ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeE
Confidence 876332111111110 0 1478999999999999999999999988753 22 22 2
Q ss_pred eecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE-ecCCccccccCcceeeeEEEEcCCC
Q 023643 197 FKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV-IDPVKDKQLKGVISCVSCITLDASE 263 (279)
Q Consensus 197 ~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~ 263 (279)
....+..-.+..|+.....+|++..||++.|||+|....... ..... ..|.+.+..+.|++.|
T Consensus 199 ~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstr----p~hnGa~R~c~Fsl~g 262 (344)
T KOG4532|consen 199 EAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTR----PHHNGAFRVCRFSLYG 262 (344)
T ss_pred ecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccC----CCCCCceEEEEecCCC
Confidence 223344557788999889999999999999999997543332 22222 5688999999999865
No 268
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=8.4e-10 Score=89.67 Aligned_cols=192 Identities=10% Similarity=0.086 Sum_probs=109.1
Q ss_pred ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEE-ecCCCc--EEEEeCCCCCcccccccCCcccceeeec
Q 023643 4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVI-ASSDGS--ITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~-~~~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.|.+||+++.+...+.... +.....+|+| +++.|+. .+.+|. |.++|+.++
T Consensus 243 ~L~~~dl~tg~~~~lt~~~---g~~~~~~wSP----DG~~La~~~~~~g~~~Iy~~dl~tg------------------- 296 (448)
T PRK04792 243 EIFVQDIYTQVREKVTSFP---GINGAPRFSP----DGKKLALVLSKDGQPEIYVVDIATK------------------- 296 (448)
T ss_pred EEEEEECCCCCeEEecCCC---CCcCCeeECC----CCCEEEEEEeCCCCeEEEEEECCCC-------------------
Confidence 3666677665433333332 3345689999 8887765 456665 666777653
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEE-eeCCCcEEEe--ecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLS-CGDDGRICGW--RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS 157 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~~~dg~i~iw--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (279)
+ ...+..+........|+|+++ .|+. ...++...+| |+.... .......+.
T Consensus 297 ~-~~~lt~~~~~~~~p~wSpDG~--~I~f~s~~~g~~~Iy~~dl~~g~--~~~Lt~~g~--------------------- 350 (448)
T PRK04792 297 A-LTRITRHRAIDTEPSWHPDGK--SLIFTSERGGKPQIYRVNLASGK--VSRLTFEGE--------------------- 350 (448)
T ss_pred C-eEECccCCCCccceEECCCCC--EEEEEECCCCCceEEEEECCCCC--EEEEecCCC---------------------
Confidence 1 122333444556789999998 5554 4445554554 443221 111111110
Q ss_pred CCCCceeEEEcCCCCeEEEecC-CC--eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC-CC--eEEEEeCC
Q 023643 158 PVPENNAIAVDPQGGAIFSAAG-DS--CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE-DG--TARIWDCK 231 (279)
Q Consensus 158 ~~~~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~vwd~~ 231 (279)
.....+|+|++++++..+. ++ .|.++|+.+++... +... .......|+|+|+.|+..+. ++ .+.+++.
T Consensus 351 ---~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~- 424 (448)
T PRK04792 351 ---QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI- 424 (448)
T ss_pred ---CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-
Confidence 0234689999998876554 33 56678888776543 2211 11224479999998776554 33 3777776
Q ss_pred CCceEEEecCCccccccCcceeeeEEEEcC
Q 023643 232 SGKCIKVIDPVKDKQLKGVISCVSCITLDA 261 (279)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 261 (279)
+|+....+ ..+...+...+|+|
T Consensus 425 ~G~~~~~l--------~~~~g~~~~p~Wsp 446 (448)
T PRK04792 425 DGRFKARL--------PAGQGEVKSPAWSP 446 (448)
T ss_pred CCCceEEC--------cCCCCCcCCCccCC
Confidence 56666666 23334566777876
No 269
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.26 E-value=2.8e-11 Score=86.12 Aligned_cols=207 Identities=11% Similarity=0.111 Sum_probs=119.1
Q ss_pred eEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEE
Q 023643 28 VFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALL 107 (279)
Q Consensus 28 v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 107 (279)
+..+.++. ...|+++..++.+......+..+....+.... ..+...+..|.++-.+-..+-.++ .+
T Consensus 39 ~~~~~~v~-----~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~-------i~~~~~~a~~sep~p~~~~s~~~t--~V 104 (319)
T KOG4714|consen 39 LSKVSLSA-----EYILFTGETSSQIISLGKGRGRCISLWERDDG-------IDPFKVLAKNSEIDPNDACTMTDN--RV 104 (319)
T ss_pred EEEeechh-----hheeecccchhheeeeccceEEEechhhcccC-------cCceeeeeccCCCCCcccccccCC--ce
Confidence 66666665 46677877777776666554322111111000 223333434444332222222333 69
Q ss_pred EEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC-----CCe
Q 023643 108 LSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG-----DSC 182 (279)
Q Consensus 108 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~ 182 (279)
++++.||.+.+++.+... .........+.. -.+.+....++.+.++.. -+.
T Consensus 105 ~~~~~dg~~~v~s~~~~~--~~~~~i~~~~~~----------------------~as~~~~~~~~~i~s~~~g~~n~~d~ 160 (319)
T KOG4714|consen 105 CIGYADGSLAVFSTDKDL--ALMSRIPSIHSG----------------------SASRKICRHGNSILSGGCGNWNAQDN 160 (319)
T ss_pred EecCCCceEEEEechHHH--hhhhhccccccc----------------------ccccceeecccEEecCCcceEeeccc
Confidence 999999999999975411 100000000000 011222223333433321 234
Q ss_pred EEEEecCCCcEEEEeecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcC
Q 023643 183 AYCWDVESSRIKMVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDA 261 (279)
Q Consensus 183 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 261 (279)
.+.|+++..+.+..-+.....|.+++-+|. .+.+++|+.||.+-+||.+.......+ +..|+.+++.+-|+|
T Consensus 161 ~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~-------l~ahk~~i~eV~FHp 233 (319)
T KOG4714|consen 161 FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL-------LKAHKAEIWEVHFHP 233 (319)
T ss_pred eeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH-------HHHhhhhhhheeccC
Confidence 556665543322222222344899999995 677888999999999999987433332 378999999999999
Q ss_pred -CCCEEEEEcCcceEEeCC
Q 023643 262 -SESWLVRVRATNYVILFS 279 (279)
Q Consensus 262 -~~~~l~~~~~d~~i~~wd 279 (279)
++..|+++++||.+..||
T Consensus 234 k~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 234 KNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred CCchheeEecCCCcEEEEc
Confidence 578899999999999997
No 270
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=2.3e-08 Score=74.94 Aligned_cols=227 Identities=10% Similarity=0.115 Sum_probs=136.2
Q ss_pred Cceeeecccc--ccccceeeeeecccceEEEEECCCCCCCCCEEEEec-CCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643 3 GDSTNWDEDA--YRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS-SDGSITSYSIPSCISKLPLGLSNSKVQQLLG 79 (279)
Q Consensus 3 G~v~iw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 79 (279)
|.|-.|.++. ++...+........+-+.++.++ ++++++++. ..|.|.++.++......
T Consensus 64 ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~----~g~~vf~AnY~~g~v~v~p~~~dG~l~-------------- 125 (346)
T COG2706 64 GGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE----DGRFVFVANYHSGSVSVYPLQADGSLQ-------------- 125 (346)
T ss_pred CcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC----CCCEEEEEEccCceEEEEEcccCCccc--------------
Confidence 4444444332 44333433333334447889999 898888876 56899999997632111
Q ss_pred ccccccccCCccC----------eEEEEecCCCCceEEEEeeC-CCcEEEeecCCCccCcceeeeccCcccceEEeecCC
Q 023643 80 IEPDGFLHGHDGP----------AYDVKFYGGNEDALLLSCGD-DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQ 148 (279)
Q Consensus 80 ~~~~~~~~~h~~~----------v~~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (279)
..+. +..|.++ +....+.|+++ +|++..- -..|.+|++.++....... .....
T Consensus 126 -~~v~-~~~h~g~~p~~rQ~~~h~H~a~~tP~~~--~l~v~DLG~Dri~~y~~~dg~L~~~~~------------~~v~~ 189 (346)
T COG2706 126 -PVVQ-VVKHTGSGPHERQESPHVHSANFTPDGR--YLVVPDLGTDRIFLYDLDDGKLTPADP------------AEVKP 189 (346)
T ss_pred -ccee-eeecCCCCCCccccCCccceeeeCCCCC--EEEEeecCCceEEEEEcccCccccccc------------cccCC
Confidence 1111 1113332 77889999998 7777653 3468899987432111100 00011
Q ss_pred CCCccccCCCCCCceeEEEcCCCCeEEEecC-CCeEEEEecCCC-cEEEEeec---------CCcceEEEEEcCCCcEEE
Q 023643 149 HKGPWGALSPVPENNAIAVDPQGGAIFSAAG-DSCAYCWDVESS-RIKMVFKG---------HSDYLHCIVARNSTNQIV 217 (279)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~-~~~~~~~~---------~~~~i~~i~~~~~~~~l~ 217 (279)
.. .-+-|.|+|++++.++.+. +++|-+|..... ..+..++. ...+.-+|..+++|++|.
T Consensus 190 G~----------GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLY 259 (346)
T COG2706 190 GA----------GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLY 259 (346)
T ss_pred CC----------CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEE
Confidence 11 2478999999998877654 889999998763 22233321 234567889999999998
Q ss_pred EecC-CCeEEEEeCCCC-ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcc-eEEeC
Q 023643 218 TGSE-DGTARIWDCKSG-KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATN-YVILF 278 (279)
Q Consensus 218 ~~~~-d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~w 278 (279)
++.. ...|.+|.+... ..+..+... ..+...-..+.|+|.+++|+++..++ .|.+|
T Consensus 260 asNRg~dsI~~f~V~~~~g~L~~~~~~-----~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 260 ASNRGHDSIAVFSVDPDGGKLELVGIT-----PTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred EecCCCCeEEEEEEcCCCCEEEEEEEe-----ccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 8753 346888877542 222222110 22333457788999999999988754 45554
No 271
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.24 E-value=1.7e-10 Score=86.97 Aligned_cols=154 Identities=16% Similarity=0.115 Sum_probs=104.2
Q ss_pred eEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCC
Q 023643 93 AYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG 172 (279)
Q Consensus 93 v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 172 (279)
...+..++.+. +++.+..+....+++++......... ...++. ..-+++.+..+..
T Consensus 65 ~~~~~~s~~~~--llAv~~~~K~~~~f~~~~~~~~~kl~--------~~~~v~--------------~~~~ai~~~~~~~ 120 (390)
T KOG3914|consen 65 PALVLTSDSGR--LVAVATSSKQRAVFDYRENPKGAKLL--------DVSCVP--------------KRPTAISFIREDT 120 (390)
T ss_pred ccccccCCCce--EEEEEeCCCceEEEEEecCCCcceee--------eEeecc--------------cCcceeeeeeccc
Confidence 34455667776 88888777777777776432200000 000000 0124455555444
Q ss_pred eEEEec---CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccC
Q 023643 173 AIFSAA---GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKG 249 (279)
Q Consensus 173 ~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 249 (279)
...++. ....+.+|....+.+ ..+.+|-..++.++++||+++|+++..|..|+|-.......+..+- -|
T Consensus 121 sv~v~dkagD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc-------lG 192 (390)
T KOG3914|consen 121 SVLVADKAGDVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC-------LG 192 (390)
T ss_pred eEEEEeecCCceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc-------cc
Confidence 444443 344555665555444 3455799999999999999999999999999998877666666663 68
Q ss_pred cceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 250 VISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 250 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
|+..|..++.-++ ..|++||.|+++++||
T Consensus 193 H~eFVS~isl~~~-~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 193 HKEFVSTISLTDN-YLLLSGSGDKTLRLWD 221 (390)
T ss_pred cHhheeeeeeccC-ceeeecCCCCcEEEEe
Confidence 9999999998865 4599999999999997
No 272
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=6.9e-11 Score=87.50 Aligned_cols=146 Identities=13% Similarity=0.217 Sum_probs=106.4
Q ss_pred CccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEc
Q 023643 89 HDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVD 168 (279)
Q Consensus 89 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 168 (279)
-.+.|.++.|...++ ++..|...|.|...|++....+.. .+...+ -+...|+++..-
T Consensus 251 sksDVfAlQf~~s~n--Lv~~GcRngeI~~iDLR~rnqG~~---------~~a~rl------------yh~Ssvtslq~L 307 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDN--LVFNGCRNGEIFVIDLRCRNQGNG---------WCAQRL------------YHDSSVTSLQIL 307 (425)
T ss_pred cchhHHHHHhcccCC--eeEecccCCcEEEEEeeecccCCC---------cceEEE------------EcCcchhhhhhh
Confidence 456689999998887 999999999999999986421111 111111 111236666655
Q ss_pred C-CCCeEEEecCCCeEEEEecCCCcE---EEEeecCCcceEEE--EEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCC
Q 023643 169 P-QGGAIFSAAGDSCAYCWDVESSRI---KMVFKGHSDYLHCI--VARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPV 242 (279)
Q Consensus 169 ~-~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~i~~i--~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~ 242 (279)
. ++++|++.+.+|+|++||++.-++ ++++++|-+.-.-+ -..+....+++++.|...|||.+++|+++.+++.+
T Consensus 308 q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 308 QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 4 677899999999999999997666 88888886543332 34556788999999999999999999999998755
Q ss_pred ccccccCcceeeeEEEEcC
Q 023643 243 KDKQLKGVISCVSCITLDA 261 (279)
Q Consensus 243 ~~~~~~~~~~~v~~~~~~~ 261 (279)
. ......+.+++|+.
T Consensus 388 ~----s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 388 Y----SASEVDIPSVAFDS 402 (425)
T ss_pred C----ccccccccceehhc
Confidence 4 34445677788764
No 273
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.23 E-value=3e-10 Score=81.05 Aligned_cols=114 Identities=18% Similarity=0.254 Sum_probs=81.3
Q ss_pred ceeEEEcCCCC-eEEEecCCCeEEEEecCCCc-EEEEeecCCcceEEEEEcC-CCcEEEEecCCCeEEEEeCCCCceEEE
Q 023643 162 NNAIAVDPQGG-AIFSAAGDSCAYCWDVESSR-IKMVFKGHSDYLHCIVARN-STNQIVTGSEDGTARIWDCKSGKCIKV 238 (279)
Q Consensus 162 i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~ 238 (279)
|.+++-+|..+ .+++|+.||.+-+||.++.. +...++.|..++..+-|+| ++..|++++.||.+--||..+ +.+.
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~-~~l~- 259 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST-TFLS- 259 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC-ceEE-
Confidence 67888888554 67788999999999999864 3445678999999999999 588999999999999999653 3333
Q ss_pred ecCCcc------------------ccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 239 IDPVKD------------------KQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 239 ~~~~~~------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+..... .-+......|+ .|+--|..|++|+.-+.|++++
T Consensus 260 i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sin--sfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 260 ISNQASVISSWLSGDPVKSRIEITSLLPSRSLSIN--SFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ecCccccccccccCCcccceEeeeccccccceeee--eeeccCceEEeccccceEEEec
Confidence 111110 00111122233 2444588999999999888864
No 274
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.22 E-value=5.5e-09 Score=91.20 Aligned_cols=221 Identities=14% Similarity=0.056 Sum_probs=138.7
Q ss_pred ccceEEEEECCCCCCCCCEEEEecCCCcEEEE----eCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecC
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSY----SIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYG 100 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 100 (279)
...|.++.|.+ +...++.+..+|.|.+. +..... .+. ...-...|.+++|+|
T Consensus 75 ~~~ivs~~yl~----d~~~l~~~~~~Gdi~~~~~~~~~~~~~-----------------~E~---VG~vd~GI~a~~WSP 130 (928)
T PF04762_consen 75 NDKIVSFQYLA----DSESLCIALASGDIILVREDPDPDEDE-----------------IEI---VGSVDSGILAASWSP 130 (928)
T ss_pred CCcEEEEEecc----CCCcEEEEECCceEEEEEccCCCCCce-----------------eEE---EEEEcCcEEEEEECC
Confidence 46799999999 78888899999999998 444321 122 222356799999999
Q ss_pred CCCceEEEEeeCCCcEEEeecCCCccCc--------------------ceeeeccCcccceEE-eecCCCC-CccccCCC
Q 023643 101 GNEDALLLSCGDDGRICGWRWKEFTESK--------------------VPINLQGNHVKPVLD-LVNHQHK-GPWGALSP 158 (279)
Q Consensus 101 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~--------------------~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~ 158 (279)
++. +|+....++.+.+-.-.-..-.+ ....+.|...+.... +..+.-. ..-.....
T Consensus 131 D~E--lla~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~ 208 (928)
T PF04762_consen 131 DEE--LLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSW 208 (928)
T ss_pred CcC--EEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCcccc
Confidence 998 89888888888776532110000 000111111110000 0000000 00000112
Q ss_pred CCCceeEEEcCCCCeEEEecC---C---CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC---CCeEEEEe
Q 023643 159 VPENNAIAVDPQGGAIFSAAG---D---SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE---DGTARIWD 229 (279)
Q Consensus 159 ~~~i~~~~~~~~~~~l~~~~~---d---~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---d~~i~vwd 229 (279)
...-..|+|-.||.++++.+- . ..+++|+-+ |.+..+-+.-.+--.+++|.|.|++||+... ...|.+|.
T Consensus 209 dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE 287 (928)
T PF04762_consen 209 DDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE 287 (928)
T ss_pred CCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe
Confidence 234568999999999998764 2 579999955 7665555544444467899999999998764 34577777
Q ss_pred CCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 230 CKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
++|..-..+.... ......|..+.|++|+..||..-.|. |.+|
T Consensus 288 -rNGLrhgeF~l~~----~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLW 330 (928)
T PF04762_consen 288 -RNGLRHGEFTLRF----DPEEEKVIELAWNSDSEILAVWLEDR-VQLW 330 (928)
T ss_pred -cCCcEeeeEecCC----CCCCceeeEEEECCCCCEEEEEecCC-ceEE
Confidence 5666555554321 23456789999999999999977655 8887
No 275
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=5.5e-10 Score=90.58 Aligned_cols=216 Identities=15% Similarity=0.200 Sum_probs=142.4
Q ss_pred ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccc-cCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLG-LSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE 103 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 103 (279)
.....++.|+. ...++|+|+.||.+++..+.+........ +..... ...-+++.||.+.|.-+.|+.+.+
T Consensus 14 nvkL~c~~WNk----e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~sn-----LsmNQtLeGH~~sV~vvTWNe~~Q 84 (1189)
T KOG2041|consen 14 NVKLHCAEWNK----ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASN-----LSMNQTLEGHNASVMVVTWNENNQ 84 (1189)
T ss_pred CceEEEEEEcc----cCCeEEeccccceeEEEEccccCCcccccccccccc-----cchhhhhccCcceEEEEEeccccc
Confidence 35678999999 89999999999999999998753222111 000000 233457889999999999999887
Q ss_pred ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeE
Q 023643 104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCA 183 (279)
Q Consensus 104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 183 (279)
.|.|...+|.|.+|-+-.+ .....+..+..+.+ |.+++|+.+|..+.....||.|
T Consensus 85 --KLTtSDt~GlIiVWmlykg---sW~EEMiNnRnKSv--------------------V~SmsWn~dG~kIcIvYeDGav 139 (1189)
T KOG2041|consen 85 --KLTTSDTSGLIIVWMLYKG---SWCEEMINNRNKSV--------------------VVSMSWNLDGTKICIVYEDGAV 139 (1189)
T ss_pred --cccccCCCceEEEEeeecc---cHHHHHhhCcCccE--------------------EEEEEEcCCCcEEEEEEccCCE
Confidence 8999999999999997432 22222223333333 7899999999999999999998
Q ss_pred EEEecCCCcEEE-EeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCc----cccccCcceeeeEEE
Q 023643 184 YCWDVESSRIKM-VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVK----DKQLKGVISCVSCIT 258 (279)
Q Consensus 184 ~i~d~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~ 258 (279)
.+=.++..+.-. .+++ .....+.|++|.+.++.+-.+|.+.+||.... ....+.... ...+......|..+.
T Consensus 140 IVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgn-F~~Kl~~~c~Vn~tg~~s~~~~kia~i~ 216 (1189)
T KOG2041|consen 140 IVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGN-FERKLEKDCEVNGTGIFSNFPTKIAEIE 216 (1189)
T ss_pred EEEeeccceecchhcch--heccceeecccHHHHHhhhcCCcEEEeccccc-HHHhhhhceEEeeeeeecCCCcccccee
Confidence 877665332211 2222 22447889999999999999999999996532 111111100 000112222355555
Q ss_pred Ec--------CCCCEEEEEcCcceEEe
Q 023643 259 LD--------ASESWLVRVRATNYVIL 277 (279)
Q Consensus 259 ~~--------~~~~~l~~~~~d~~i~~ 277 (279)
|. |+.+.|+.+-..|.+.+
T Consensus 217 w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 217 WNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred eccCccccCCCCCCEEEEEEcCceehh
Confidence 53 46778888877776543
No 276
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=1.5e-10 Score=91.19 Aligned_cols=152 Identities=14% Similarity=0.187 Sum_probs=100.8
Q ss_pred CCceeeecccccc-----ccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccce
Q 023643 2 CGDSTNWDEDAYR-----KSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQ 76 (279)
Q Consensus 2 dG~v~iw~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 76 (279)
|.+|++|.++... ..+..++..|+.+|..+.|-. +-+.+++ .||-|.+||.--
T Consensus 756 DKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~----~lr~i~S--cD~giHlWDPFi---------------- 813 (1034)
T KOG4190|consen 756 DKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA----DLRSIAS--CDGGIHLWDPFI---------------- 813 (1034)
T ss_pred CceEEEEEeccccCccccceeeeEhhhccCcccceeeee----ccceeee--ccCcceeecccc----------------
Confidence 7899999976432 234557788999999999998 6666655 588899999876
Q ss_pred eeeccccccccC--CccCeEEEEecCCCCceEEE-EeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcc
Q 023643 77 LLGIEPDGFLHG--HDGPAYDVKFYGGNEDALLL-SCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPW 153 (279)
Q Consensus 77 ~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (279)
++++..+.. ..+.+..+.-.|+-..+.++ -++...+|+++|.+.. .....++.. +
T Consensus 814 ---gr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc---e~~~E~kVc---------n------- 871 (1034)
T KOG4190|consen 814 ---GRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC---EWTCELKVC---------N------- 871 (1034)
T ss_pred ---cchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccc---cceeeEEec---------c-------
Confidence 344443321 22334444444442212444 4478899999997643 222221110 0
Q ss_pred ccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee
Q 023643 154 GALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK 198 (279)
Q Consensus 154 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 198 (279)
...+..-+++++..+.|++++++-.+|+|.+.|.++|+.+...+
T Consensus 872 -a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 872 -APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred -CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence 01112236899999999999999999999999999999887654
No 277
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=9.8e-10 Score=84.30 Aligned_cols=222 Identities=12% Similarity=0.173 Sum_probs=148.8
Q ss_pred CCCceeeecccc-ccccceeeeeecccceEEEEECCCCCCCCCEEEEecC-CCcEEEEeCCCCCccc-----------cc
Q 023643 1 MCGDSTNWDEDA-YRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASS-DGSITSYSIPSCISKL-----------PL 67 (279)
Q Consensus 1 ~dG~v~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~-----------~~ 67 (279)
+||.++.|-... .-.+.++.+..|...|.+++.+- ++-++.+++. |..++++|+..-.... ..
T Consensus 28 lDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~----dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~w 103 (558)
T KOG0882|consen 28 LDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY----DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEW 103 (558)
T ss_pred cchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc----cceeEeeccCcccceeEEEeeccchhhhcccccCCCceEE
Confidence 589999998655 33455677788999999999998 8999999877 9999999987643221 00
Q ss_pred ccCCc-------------ccceeee----ccccccc-cCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCC-CccCc
Q 023643 68 GLSNS-------------KVQQLLG----IEPDGFL-HGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKE-FTESK 128 (279)
Q Consensus 68 ~~~~~-------------~~~~~~~----~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~-~~~~~ 128 (279)
...+. ..-.+.. ..+...+ .-|..+|..+.+.|.+. .+++....|.|.-|.... .+...
T Consensus 104 v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D--s~vSiD~~gmVEyWs~e~~~qfPr 181 (558)
T KOG0882|consen 104 VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD--SAVSIDISGMVEYWSAEGPFQFPR 181 (558)
T ss_pred ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc--ceeeccccceeEeecCCCcccCcc
Confidence 00111 0000110 2222333 34899999999999998 899999999999999752 11111
Q ss_pred ceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee----------
Q 023643 129 VPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK---------- 198 (279)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---------- 198 (279)
......-.+...++.+... .....++.|+|++..+.+-..|..|++++..+++.++.+.
T Consensus 182 ~~l~~~~K~eTdLy~f~K~-----------Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ 250 (558)
T KOG0882|consen 182 TNLNFELKHETDLYGFPKA-----------KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQP 250 (558)
T ss_pred ccccccccccchhhccccc-----------ccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcc
Confidence 1111111111112111111 1135799999999999999999999999999887665532
Q ss_pred ----------------------cCC-cceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 199 ----------------------GHS-DYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 199 ----------------------~~~-~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
.|. ..-+.+.|...+++|+-|+.=| |+|.++.++...+.+-
T Consensus 251 ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 251 KSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred ccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 111 1234567888899999998777 8999999998887764
No 278
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.17 E-value=1.5e-10 Score=59.82 Aligned_cols=39 Identities=36% Similarity=0.675 Sum_probs=37.1
Q ss_pred CcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEe
Q 023643 191 SRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWD 229 (279)
Q Consensus 191 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd 229 (279)
++++.++++|.+.|++|+|+|++++|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
No 279
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=4.6e-08 Score=78.60 Aligned_cols=181 Identities=10% Similarity=0.040 Sum_probs=107.8
Q ss_pred ceEEEEECCCCCCCCCE-EEEecC---CCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCC
Q 023643 27 TVFRTVWGPSKDGSPDT-IVIASS---DGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGN 102 (279)
Q Consensus 27 ~v~~~~~~~~~~~~~~~-l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 102 (279)
......|+| +++. ++..+. +..|.++|+.+++ ..... ...+......|+|++
T Consensus 189 ~~~~p~wSp----DG~~~i~y~s~~~~~~~Iyv~dl~tg~-------------------~~~lt-~~~g~~~~~~~SPDG 244 (419)
T PRK04043 189 LNIFPKWAN----KEQTAFYYTSYGERKPTLYKYNLYTGK-------------------KEKIA-SSQGMLVVSDVSKDG 244 (419)
T ss_pred CeEeEEECC----CCCcEEEEEEccCCCCEEEEEECCCCc-------------------EEEEe-cCCCcEEeeEECCCC
Confidence 677899999 8874 554333 3568888887732 22211 234445667899999
Q ss_pred CceEEEEeeCCC--cEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC-
Q 023643 103 EDALLLSCGDDG--RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG- 179 (279)
Q Consensus 103 ~~~~l~s~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 179 (279)
+ .++++.+.++ .|.++++.... ...+..... ......|+|||+.|+..+.
T Consensus 245 ~-~la~~~~~~g~~~Iy~~dl~~g~----~~~LT~~~~----------------------~d~~p~~SPDG~~I~F~Sdr 297 (419)
T PRK04043 245 S-KLLLTMAPKGQPDIYLYDTNTKT----LTQITNYPG----------------------IDVNGNFVEDDKRIVFVSDR 297 (419)
T ss_pred C-EEEEEEccCCCcEEEEEECCCCc----EEEcccCCC----------------------ccCccEECCCCCEEEEEECC
Confidence 7 3445555454 45555654321 111111000 0134579999997766553
Q ss_pred CC--eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC---------CeEEEEeCCCCceEEEecCCcccccc
Q 023643 180 DS--CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED---------GTARIWDCKSGKCIKVIDPVKDKQLK 248 (279)
Q Consensus 180 d~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---------~~i~vwd~~~~~~~~~~~~~~~~~~~ 248 (279)
.+ .|++.|+.+++..+.... ... ...|+|+|++|+..+.. ..|.+.|+.++... .+..
T Consensus 298 ~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~------- 366 (419)
T PRK04043 298 LGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTA------- 366 (419)
T ss_pred CCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCC-------
Confidence 22 688889988776543321 111 24899999988776543 36888898877643 3321
Q ss_pred CcceeeeEEEEcCCCCEEEEEcC
Q 023643 249 GVISCVSCITLDASESWLVRVRA 271 (279)
Q Consensus 249 ~~~~~v~~~~~~~~~~~l~~~~~ 271 (279)
. .......|+|||+.|+..+.
T Consensus 367 ~--~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 367 N--GVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred C--CCcCCeEECCCCCEEEEEEc
Confidence 1 12235789999998776543
No 280
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.16 E-value=2.7e-08 Score=72.39 Aligned_cols=180 Identities=12% Similarity=0.137 Sum_probs=110.9
Q ss_pred ceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccccccc-CCccCeEEEEecCCCC--
Q 023643 27 TVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLH-GHDGPAYDVKFYGGNE-- 103 (279)
Q Consensus 27 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-- 103 (279)
.=..++|+| |+.+||.+.+.|+|+++|+...+. +.. .+...+. .-...|..+.|.+...
T Consensus 45 QWRkl~WSp----D~tlLa~a~S~G~i~vfdl~g~~l---f~I-----------~p~~~~~~d~~~Aiagl~Fl~~~~s~ 106 (282)
T PF15492_consen 45 QWRKLAWSP----DCTLLAYAESTGTIRVFDLMGSEL---FVI-----------PPAMSFPGDLSDAIAGLIFLEYKKSA 106 (282)
T ss_pred hheEEEECC----CCcEEEEEcCCCeEEEEeccccee---EEc-----------CcccccCCccccceeeeEeecccccc
Confidence 346789999 999999999999999999985321 111 1111111 1235677777765431
Q ss_pred --ceEEEEeeCCCcEEEeecCCC--ccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC
Q 023643 104 --DALLLSCGDDGRICGWRWKEF--TESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG 179 (279)
Q Consensus 104 --~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 179 (279)
...|+.-..+|.++=|-+... +..+....+. +.... ...|.++.++|..++|++|+.
T Consensus 107 ~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs---------f~~~y----------p~Gi~~~vy~p~h~LLlVgG~ 167 (282)
T PF15492_consen 107 QWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS---------FSSHY----------PHGINSAVYHPKHRLLLVGGC 167 (282)
T ss_pred ccceeEEEEeccceeeeEEEEcccCCcceeeEEEE---------ecccC----------CCceeEEEEcCCCCEEEEecc
Confidence 024666667777776665321 1111111111 10000 013789999998888877754
Q ss_pred C-----------CeEEEEecCCCcEEE-----------------------E---e---ecCCcceEEEEEcCCCcEEEEe
Q 023643 180 D-----------SCAYCWDVESSRIKM-----------------------V---F---KGHSDYLHCIVARNSTNQIVTG 219 (279)
Q Consensus 180 d-----------~~i~i~d~~~~~~~~-----------------------~---~---~~~~~~i~~i~~~~~~~~l~~~ 219 (279)
. .-+.-|.+-++.+-. . + ......|..|..||+|..|++.
T Consensus 168 ~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~i 247 (282)
T PF15492_consen 168 EQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACI 247 (282)
T ss_pred CCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEE
Confidence 2 125556553321110 0 0 1135678999999999999999
Q ss_pred cCCCeEEEEeCCCCceEEEecCCc
Q 023643 220 SEDGTARIWDCKSGKCIKVIDPVK 243 (279)
Q Consensus 220 ~~d~~i~vwd~~~~~~~~~~~~~~ 243 (279)
..+|.|.+|++.+-+....+...+
T Consensus 248 h~sG~lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 248 HFSGSLSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred EcCCeEEEEecCcchhhcccchhh
Confidence 999999999999988888775443
No 281
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=3.3e-10 Score=87.53 Aligned_cols=198 Identities=14% Similarity=0.178 Sum_probs=130.3
Q ss_pred CCceeeecccccccc-ceeeeeeccc---ceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccccee
Q 023643 2 CGDSTNWDEDAYRKS-ILKEREILTR---TVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQL 77 (279)
Q Consensus 2 dG~v~iw~~~~~~~~-~~~~~~~~~~---~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 77 (279)
||.+.-.|+...... .+.....+.. ...+++..|. +...+++|+.|-.+++||...-.....-. +
T Consensus 254 D~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~---nt~~faVgG~dqf~RvYD~R~~~~e~~n~--------~ 322 (559)
T KOG1334|consen 254 DAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR---NTNEFAVGGSDQFARVYDQRRIDKEENNG--------V 322 (559)
T ss_pred ccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC---CccccccCChhhhhhhhcccchhhccccc--------h
Confidence 455555555443322 1223333334 6788899994 67799999999999999987632211100 0
Q ss_pred ee-ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccC----------cceeeeccCcccceEEeec
Q 023643 78 LG-IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTES----------KVPINLQGNHVKPVLDLVN 146 (279)
Q Consensus 78 ~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 146 (279)
+. .-+-.......-.|++++|+.++. -|+++..|--|+++.-+..... .....+++|...
T Consensus 323 ~~~f~p~hl~~d~~v~ITgl~Ysh~~s--ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~------- 393 (559)
T KOG1334|consen 323 LDKFCPHHLVEDDPVNITGLVYSHDGS--ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS------- 393 (559)
T ss_pred hhhcCCccccccCcccceeEEecCCcc--ceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccc-------
Confidence 00 001111112234589999997776 6777778888999954322110 001112222111
Q ss_pred CCCCCccccCCCCCCceeEEE-cCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeE
Q 023643 147 HQHKGPWGALSPVPENNAIAV-DPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTA 225 (279)
Q Consensus 147 ~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i 225 (279)
..|..+.| -|...++++|+.-|.|.||+-.+++.++-+++...-|.|+.=+|--..||+++.|..|
T Consensus 394 -------------~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DV 460 (559)
T KOG1334|consen 394 -------------RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDV 460 (559)
T ss_pred -------------cccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccce
Confidence 12556664 5778899999999999999999999999998877799999999988999999999999
Q ss_pred EEEeCCC
Q 023643 226 RIWDCKS 232 (279)
Q Consensus 226 ~vwd~~~ 232 (279)
+||-..+
T Consensus 461 KIWTP~~ 467 (559)
T KOG1334|consen 461 KIWTPLT 467 (559)
T ss_pred eeecCCc
Confidence 9998744
No 282
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.13 E-value=4.2e-08 Score=85.83 Aligned_cols=230 Identities=13% Similarity=0.165 Sum_probs=134.4
Q ss_pred CCceeee----ccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccc------------
Q 023643 2 CGDSTNW----DEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKL------------ 65 (279)
Q Consensus 2 dG~v~iw----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~------------ 65 (279)
+|.|-+. +......+++ ..-...|.+++||| |+.+||..+.++++.+..-.- +...
T Consensus 96 ~Gdi~~~~~~~~~~~~~~E~V---G~vd~GI~a~~WSP----D~Ella~vT~~~~l~~mt~~f-d~i~E~~l~~~~~~~~ 167 (928)
T PF04762_consen 96 SGDIILVREDPDPDEDEIEIV---GSVDSGILAASWSP----DEELLALVTGEGNLLLMTRDF-DPISEVPLDSDDFGES 167 (928)
T ss_pred CceEEEEEccCCCCCceeEEE---EEEcCcEEEEEECC----CcCEEEEEeCCCEEEEEeccc-eEEEEeecCccccCCC
Confidence 6777777 5444333333 33458999999999 999999999999987765321 1000
Q ss_pred ---ccccCCccc------ceeee---ccc------cccccCCccCeEEEEecCCCCceEEEEeeC---C---CcEEEeec
Q 023643 66 ---PLGLSNSKV------QQLLG---IEP------DGFLHGHDGPAYDVKFYGGNEDALLLSCGD---D---GRICGWRW 121 (279)
Q Consensus 66 ---~~~~~~~~~------~~~~~---~~~------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---d---g~i~iw~~ 121 (279)
..++..... .+... .++ ...+. +...-..|+|-.||. +||+.+. . ..+|||+-
T Consensus 168 ~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~--yFAVss~~~~~~~~R~iRVy~R 244 (928)
T PF04762_consen 168 KHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGE--YFAVSSVEPETGSRRVIRVYSR 244 (928)
T ss_pred ceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCc--EEEEEEEEcCCCceeEEEEECC
Confidence 111100000 00000 000 11122 344566899999998 8888764 2 47889883
Q ss_pred CCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC---CCeEEEEecCCCcEEEEee
Q 023643 122 KEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG---DSCAYCWDVESSRIKMVFK 198 (279)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~ 198 (279)
+ + . .... .+.... --.+++|-|.|+++++... ...|.+|. ++|..-..|.
T Consensus 245 e-G---~-L~st-SE~v~g--------------------Le~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~ 297 (928)
T PF04762_consen 245 E-G---E-LQST-SEPVDG--------------------LEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFT 297 (928)
T ss_pred C-c---e-EEec-cccCCC--------------------ccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEe
Confidence 2 1 1 0000 000000 0257899999999988754 35577776 4455444443
Q ss_pred c----CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce--EEEecCCccccccCcceeeeEEEEcCC-CCEEEEEcC
Q 023643 199 G----HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC--IKVIDPVKDKQLKGVISCVSCITLDAS-ESWLVRVRA 271 (279)
Q Consensus 199 ~----~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~ 271 (279)
. ....|..++|++++..|+..-.|. |.+|-..+-.. .+.+.. .....+..+.|+|. ...|...+.
T Consensus 298 l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~-------~~~~~~~~~~Wdpe~p~~L~v~t~ 369 (928)
T PF04762_consen 298 LRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRF-------SSSESVNFVKWDPEKPLRLHVLTS 369 (928)
T ss_pred cCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEc-------cCCCCCCceEECCCCCCEEEEEec
Confidence 2 456899999999999999977666 99998877542 223321 11223445889985 344555555
Q ss_pred cceEEe
Q 023643 272 TNYVIL 277 (279)
Q Consensus 272 d~~i~~ 277 (279)
+|.+..
T Consensus 370 ~g~~~~ 375 (928)
T PF04762_consen 370 NGQYEI 375 (928)
T ss_pred CCcEEE
Confidence 455543
No 283
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.11 E-value=3.5e-07 Score=68.67 Aligned_cols=181 Identities=17% Similarity=0.199 Sum_probs=110.5
Q ss_pred eEEEEEC-CCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccc--cC-CccCeEEEEecCCCC
Q 023643 28 VFRTVWG-PSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFL--HG-HDGPAYDVKFYGGNE 103 (279)
Q Consensus 28 v~~~~~~-~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-h~~~v~~~~~~~~~~ 103 (279)
...+++. + ++.++ .+... .+.++|+.+++. +.+... .. .....+.+++.|++.
T Consensus 42 ~~G~~~~~~----~g~l~-v~~~~-~~~~~d~~~g~~-----------------~~~~~~~~~~~~~~~~ND~~vd~~G~ 98 (246)
T PF08450_consen 42 PNGMAFDRP----DGRLY-VADSG-GIAVVDPDTGKV-----------------TVLADLPDGGVPFNRPNDVAVDPDGN 98 (246)
T ss_dssp EEEEEEECT----TSEEE-EEETT-CEEEEETTTTEE-----------------EEEEEEETTCSCTEEEEEEEE-TTS-
T ss_pred CceEEEEcc----CCEEE-EEEcC-ceEEEecCCCcE-----------------EEEeeccCCCcccCCCceEEEcCCCC
Confidence 6677777 5 55544 44444 456668877421 111222 11 345688999999997
Q ss_pred ceEEEEeeCC--------CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEE
Q 023643 104 DALLLSCGDD--------GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF 175 (279)
Q Consensus 104 ~~~l~s~~~d--------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 175 (279)
+.++.... |.|..++.. . .......+ - ...+.|+|+|+++.|+
T Consensus 99 --ly~t~~~~~~~~~~~~g~v~~~~~~-~---~~~~~~~~-~----------------------~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 99 --LYVTDSGGGGASGIDPGSVYRIDPD-G---KVTVVADG-L----------------------GFPNGIAFSPDGKTLY 149 (246)
T ss_dssp --EEEEEECCBCTTCGGSEEEEEEETT-S---EEEEEEEE-E----------------------SSEEEEEEETTSSEEE
T ss_pred --EEEEecCCCccccccccceEEECCC-C---eEEEEecC-c----------------------ccccceEECCcchhee
Confidence 66665543 345555543 1 11111111 0 0147899999999776
Q ss_pred -EecCCCeEEEEecCCCc--E--EEEe---ecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccc
Q 023643 176 -SAAGDSCAYCWDVESSR--I--KMVF---KGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQL 247 (279)
Q Consensus 176 -~~~~d~~i~i~d~~~~~--~--~~~~---~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 247 (279)
+-+..+.|..+++.... . .+.+ ....+..-.+++..+|++.++....+.|.++|.+ |+.+..+..
T Consensus 150 v~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~------ 222 (246)
T PF08450_consen 150 VADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL------ 222 (246)
T ss_dssp EEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-------
T ss_pred ecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC------
Confidence 55678889999986322 1 2222 2222357889999999998888889999999977 998888853
Q ss_pred cCcceeeeEEEEc-CCCCEEEEE
Q 023643 248 KGVISCVSCITLD-ASESWLVRV 269 (279)
Q Consensus 248 ~~~~~~v~~~~~~-~~~~~l~~~ 269 (279)
....+++++|. ++.+.|+..
T Consensus 223 --p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 223 --PVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp --SSSSEEEEEEESTTSSEEEEE
T ss_pred --CCCCEEEEEEECCCCCEEEEE
Confidence 23368999994 665655544
No 284
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.11 E-value=4.8e-10 Score=91.08 Aligned_cols=217 Identities=17% Similarity=0.160 Sum_probs=140.5
Q ss_pred eeecccccc-ccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccc
Q 023643 6 TNWDEDAYR-KSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDG 84 (279)
Q Consensus 6 ~iw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (279)
.+|++.... ..+...+.+|...|+.+-|.|. ....+|+++.|-.+..||+++. ..++.
T Consensus 94 iiwnlA~ss~~aIef~lhghsraitd~n~~~q---~pdVlatcsvdt~vh~wd~rSp------------------~~p~y 152 (1081)
T KOG0309|consen 94 IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQ---HPDVLATCSVDTYVHAWDMRSP------------------HRPFY 152 (1081)
T ss_pred hhhhhhcCCccceEEEEecCccceeccccCCC---CCcceeeccccccceeeeccCC------------------Cccee
Confidence 467754333 2333456789999999999994 8899999999999999999985 45556
Q ss_pred cccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCcee
Q 023643 85 FLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNA 164 (279)
Q Consensus 85 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 164 (279)
.+..-......++|+-... .+.+.+...-|++||++.+.. .....++ +.. .|+.
T Consensus 153 s~~~w~s~asqVkwnyk~p--~vlasshg~~i~vwd~r~gs~--pl~s~K~-~vs---------------------~vn~ 206 (1081)
T KOG0309|consen 153 STSSWRSAASQVKWNYKDP--NVLASSHGNDIFVWDLRKGST--PLCSLKG-HVS---------------------SVNS 206 (1081)
T ss_pred eeecccccCceeeecccCc--chhhhccCCceEEEeccCCCc--ceEEecc-cce---------------------eeeh
Confidence 5555445577899998776 555566677899999875432 2223333 221 1566
Q ss_pred EEEcC-CCCeEEEecCCCeEEEEecCCC--cEEEEeecCCcceEEEEEcCC--CcEEEEecCCCeEEEEeCCC-------
Q 023643 165 IAVDP-QGGAIFSAAGDSCAYCWDVESS--RIKMVFKGHSDYLHCIVARNS--TNQIVTGSEDGTARIWDCKS------- 232 (279)
Q Consensus 165 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~vwd~~~------- 232 (279)
++|+. -...+.+.+.|++|++||-... +..+... -..+|.--++-|- |.++.---.+..+.+++.+.
T Consensus 207 ~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt-t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~ 285 (1081)
T KOG0309|consen 207 IDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT-TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNV 285 (1081)
T ss_pred HHHhhhhhhhhcccCCCCceeeecccccccccceecc-ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhcc
Confidence 66664 2346888999999999998653 2223222 3345555555553 33332222233444444432
Q ss_pred ---CceEEEecCCccccccCcceeeeEEEEcCC----------CCEEEEEcCcceEEeC
Q 023643 233 ---GKCIKVIDPVKDKQLKGVISCVSCITLDAS----------ESWLVRVRATNYVILF 278 (279)
Q Consensus 233 ---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~l~~~~~d~~i~~w 278 (279)
.++++++ .+|...|....|-.. .-.|+|=+.|..+++|
T Consensus 286 ~~~~~pVh~F--------~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 286 FDLNTPVHTF--------VGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred ccCCcceeee--------cCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 3456666 688777766666432 2368999999999999
No 285
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=1.9e-08 Score=79.39 Aligned_cols=119 Identities=16% Similarity=0.269 Sum_probs=85.8
Q ss_pred CccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEc
Q 023643 89 HDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVD 168 (279)
Q Consensus 89 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 168 (279)
..++|.++.|+|++.+.-++-|-+=..+.|+|++.. .+..+.. . .=+++-|+
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~----~v~df~e-----------g-------------pRN~~~fn 320 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK----PVFDFPE-----------G-------------PRNTAFFN 320 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC----EeEeCCC-----------C-------------CccceEEC
Confidence 578999999999998222333445667889997531 1111111 1 12688999
Q ss_pred CCCCeEEEecC---CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC------CCeEEEEeCCCCceEEE
Q 023643 169 PQGGAIFSAAG---DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE------DGTARIWDCKSGKCIKV 238 (279)
Q Consensus 169 ~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------d~~i~vwd~~~~~~~~~ 238 (279)
|.|++++.++- -|.|-+||..+.+++..++... -+-+.|+|||.+++++.. |+.++||+. +|..+..
T Consensus 321 p~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~ 396 (566)
T KOG2315|consen 321 PHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHE 396 (566)
T ss_pred CCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeeh
Confidence 99998877664 4889999999988888887543 345789999999999874 788999996 5655544
No 286
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.09 E-value=1.5e-09 Score=88.38 Aligned_cols=187 Identities=16% Similarity=0.267 Sum_probs=127.2
Q ss_pred ceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceE
Q 023643 27 TVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDAL 106 (279)
Q Consensus 27 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 106 (279)
.|-...|+|... ..+-++..+...-.+|++..... ......+.+|...|+.+.|+|+.. ..
T Consensus 69 ~vad~qws~h~a--~~~wiVsts~qkaiiwnlA~ss~----------------~aIef~lhghsraitd~n~~~q~p-dV 129 (1081)
T KOG0309|consen 69 QVADVQWSPHPA--KPYWIVSTSNQKAIIWNLAKSSS----------------NAIEFVLHGHSRAITDINFNPQHP-DV 129 (1081)
T ss_pred hhcceecccCCC--CceeEEecCcchhhhhhhhcCCc----------------cceEEEEecCccceeccccCCCCC-cc
Confidence 466778888533 23444444445566899875321 222335678999999999999877 59
Q ss_pred EEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEE
Q 023643 107 LLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCW 186 (279)
Q Consensus 107 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 186 (279)
+++++.|-.+..||++.... +++....-.. +...++|+.....+.+.++...|.+|
T Consensus 130 latcsvdt~vh~wd~rSp~~-------------p~ys~~~w~s-----------~asqVkwnyk~p~vlasshg~~i~vw 185 (1081)
T KOG0309|consen 130 LATCSVDTYVHAWDMRSPHR-------------PFYSTSSWRS-----------AASQVKWNYKDPNVLASSHGNDIFVW 185 (1081)
T ss_pred eeeccccccceeeeccCCCc-------------ceeeeecccc-----------cCceeeecccCcchhhhccCCceEEE
Confidence 99999999999999875321 1111111111 24678999766666667778889999
Q ss_pred ecCCC-cEEEEeecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCC
Q 023643 187 DVESS-RIKMVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASE 263 (279)
Q Consensus 187 d~~~~-~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 263 (279)
|++.+ .++..+++|...|..++|..- ...+.+++.|++|+.||........... .....+|+.-++-|-|
T Consensus 186 d~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~-------vtt~~piw~~r~~Pfg 257 (1081)
T KOG0309|consen 186 DLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT-------VTTNFPIWRGRYLPFG 257 (1081)
T ss_pred eccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee-------ccccCcceeccccccC
Confidence 99975 688899999999999998763 5678899999999999986533222111 1233456666666643
No 287
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=8.1e-09 Score=84.78 Aligned_cols=176 Identities=15% Similarity=0.162 Sum_probs=119.4
Q ss_pred cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643 26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA 105 (279)
Q Consensus 26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 105 (279)
..++|++++. ..|+-|+.+|.|++.+.+. .+ .+...|... ..+|.
T Consensus 40 D~is~~av~~------~~~~~GtH~g~v~~~~~~~--------------------~~-~~~~~~s~~------~~~Ge-- 84 (846)
T KOG2066|consen 40 DAISCCAVHD------KFFALGTHRGAVYLTTCQG--------------------NP-KTNFDHSSS------ILEGE-- 84 (846)
T ss_pred hHHHHHHhhc------ceeeeccccceEEEEecCC--------------------cc-ccccccccc------ccCCc--
Confidence 4566666665 8999999999999999884 33 334445543 34555
Q ss_pred EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC-----CCeEEEecCC
Q 023643 106 LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ-----GGAIFSAAGD 180 (279)
Q Consensus 106 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~d 180 (279)
+++||+.||+|.|-.+-+... .....++. ++.+++++|+ .+.+++|+.-
T Consensus 85 y~asCS~DGkv~I~sl~~~~~-~~~~df~r-------------------------piksial~Pd~~~~~sk~fv~GG~a 138 (846)
T KOG2066|consen 85 YVASCSDDGKVVIGSLFTDDE-ITQYDFKR-------------------------PIKSIALHPDFSRQQSKQFVSGGMA 138 (846)
T ss_pred eEEEecCCCcEEEeeccCCcc-ceeEecCC-------------------------cceeEEeccchhhhhhhheeecCcc
Confidence 999999999999988754311 11111111 3689999997 4578999888
Q ss_pred CeEEEEecCC---CcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEE
Q 023643 181 SCAYCWDVES---SRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCI 257 (279)
Q Consensus 181 ~~i~i~d~~~---~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 257 (279)
| +.++.-+= ...+ .+....++|.++.|. |+++|-++.+| |+|||+.+++.+..++++... ......-..+
T Consensus 139 g-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~--~R~e~fpphl 211 (846)
T KOG2066|consen 139 G-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQS--VRPELFPPHL 211 (846)
T ss_pred e-EEEehhhhhcCccce-eeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCC--CCcccCCCce
Confidence 8 77765321 1122 355567899999996 89999999888 999999999988888765421 1122233456
Q ss_pred EEcCCCCEEEEEc
Q 023643 258 TLDASESWLVRVR 270 (279)
Q Consensus 258 ~~~~~~~~l~~~~ 270 (279)
.|.++.+ |+.|=
T Consensus 212 ~W~~~~~-LVIGW 223 (846)
T KOG2066|consen 212 HWQDEDR-LVIGW 223 (846)
T ss_pred EecCCCe-EEEec
Confidence 7776544 44443
No 288
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.06 E-value=4.2e-10 Score=58.13 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=35.2
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEee
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWR 120 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~ 120 (279)
+++..+.+|.++|++++|+|++. +|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~--~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN--FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS--EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc--cceeeCCCCEEEEEC
Confidence 45678899999999999999987 999999999999997
No 289
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=5.6e-10 Score=82.82 Aligned_cols=135 Identities=16% Similarity=0.177 Sum_probs=102.1
Q ss_pred ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecC-CCC
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYG-GNE 103 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~ 103 (279)
.+.|.++.|.- .++++..|+.+|.|..+|++....-. +.+...+ -|...|+++.... +++
T Consensus 252 ksDVfAlQf~~----s~nLv~~GcRngeI~~iDLR~rnqG~--------------~~~a~rl-yh~Ssvtslq~Lq~s~q 312 (425)
T KOG2695|consen 252 KSDVFALQFAG----SDNLVFNGCRNGEIFVIDLRCRNQGN--------------GWCAQRL-YHDSSVTSLQILQFSQQ 312 (425)
T ss_pred chhHHHHHhcc----cCCeeEecccCCcEEEEEeeecccCC--------------CcceEEE-EcCcchhhhhhhccccc
Confidence 46788888887 78999999999999999998741100 2222333 3888899988877 555
Q ss_pred ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeE
Q 023643 104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCA 183 (279)
Q Consensus 104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 183 (279)
+|++.+.+|.|++||++..+....+..+.+|....- -.-+.+++.+..+++++.|...
T Consensus 313 --~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a--------------------~l~~~v~~eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 313 --KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSA--------------------YLPAHVKEEEGSIFSVGDDCYT 370 (425)
T ss_pred --eEeeccCcCceeEeeehhhhcccceeeeeccccccc--------------------ccccccccccceEEEccCeeEE
Confidence 999999999999999997766666777777543211 1223456677788899999999
Q ss_pred EEEecCCCcEEEEeecC
Q 023643 184 YCWDVESSRIKMVFKGH 200 (279)
Q Consensus 184 ~i~d~~~~~~~~~~~~~ 200 (279)
+||.++++.++.++...
T Consensus 371 RiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIPFP 387 (425)
T ss_pred EEEecccCceeeccCCC
Confidence 99999999999988644
No 290
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.05 E-value=1.3e-07 Score=84.38 Aligned_cols=192 Identities=9% Similarity=0.118 Sum_probs=113.0
Q ss_pred EEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEE
Q 023643 29 FRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLL 108 (279)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 108 (279)
..++++|. ++.++++.+.++.|++||..++.... +. .........+.. .....-.....|+++|+++ .+++
T Consensus 686 ~gVa~dp~---~g~LyVad~~~~~I~v~d~~~g~v~~-~~--G~G~~~~~~g~~--~~~~~~~~P~GIavspdG~-~LYV 756 (1057)
T PLN02919 686 WDVCFEPV---NEKVYIAMAGQHQIWEYNISDGVTRV-FS--GDGYERNLNGSS--GTSTSFAQPSGISLSPDLK-ELYI 756 (1057)
T ss_pred eEEEEecC---CCeEEEEECCCCeEEEEECCCCeEEE-Ee--cCCccccCCCCc--cccccccCccEEEEeCCCC-EEEE
Confidence 57899983 56677777888999999987643210 00 000000000000 0001113457799999986 3555
Q ss_pred EeeCCCcEEEeecCCCccCcceeeeccCcc--cceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEE
Q 023643 109 SCGDDGRICGWRWKEFTESKVPINLQGNHV--KPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCW 186 (279)
Q Consensus 109 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 186 (279)
+-+.++.|++||+++... .....+... .....+......+. .........++++++|..+++-..++.|++|
T Consensus 757 ADs~n~~Irv~D~~tg~~---~~~~gg~~~~~~~l~~fG~~dG~g~---~~~l~~P~Gvavd~dG~LYVADs~N~rIrvi 830 (1057)
T PLN02919 757 ADSESSSIRALDLKTGGS---RLLAGGDPTFSDNLFKFGDHDGVGS---EVLLQHPLGVLCAKDGQIYVADSYNHKIKKL 830 (1057)
T ss_pred EECCCCeEEEEECCCCcE---EEEEecccccCcccccccCCCCchh---hhhccCCceeeEeCCCcEEEEECCCCEEEEE
Confidence 667789999999864321 110000000 00000000000000 0001123688999999988888889999999
Q ss_pred ecCCCcEEEEee-------------cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce
Q 023643 187 DVESSRIKMVFK-------------GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC 235 (279)
Q Consensus 187 d~~~~~~~~~~~-------------~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~ 235 (279)
|..++....... +.-.....|+++++|+.+++-+.++.|++||+.+++.
T Consensus 831 D~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 831 DPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 998776553321 1113567899999999999999999999999988764
No 291
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.04 E-value=8.8e-07 Score=64.73 Aligned_cols=209 Identities=10% Similarity=-0.007 Sum_probs=121.4
Q ss_pred EEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEe
Q 023643 31 TVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSC 110 (279)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 110 (279)
++.++ +|++||+. .|..|.|-..+..-... . +++ ..-+.....=..++|+|++. +||.+
T Consensus 3 ~~~~~----~Gk~lAi~-qd~~iEiRsa~Ddf~si------------~-~kc-qVpkD~~PQWRkl~WSpD~t--lLa~a 61 (282)
T PF15492_consen 3 LALSS----DGKLLAIL-QDQCIEIRSAKDDFSSI------------I-GKC-QVPKDPNPQWRKLAWSPDCT--LLAYA 61 (282)
T ss_pred eeecC----CCcEEEEE-eccEEEEEeccCCchhe------------e-EEE-ecCCCCCchheEEEECCCCc--EEEEE
Confidence 45556 88888775 45567666555421000 0 111 11122222345799999998 99999
Q ss_pred eCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC------CCeEEEecCCCeEE
Q 023643 111 GDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ------GGAIFSAAGDSCAY 184 (279)
Q Consensus 111 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~d~~i~ 184 (279)
...|+|+++|+... ...........+ .....+|..+.|-+. ...|++-..+|.++
T Consensus 62 ~S~G~i~vfdl~g~----~lf~I~p~~~~~---------------~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 62 ESTGTIRVFDLMGS----ELFVIPPAMSFP---------------GDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred cCCCeEEEEecccc----eeEEcCcccccC---------------CccccceeeeEeeccccccccceeEEEEeccceee
Confidence 99999999997521 111111111000 000113455555432 12566667788887
Q ss_pred EEecCC-----CcEEEEeec---CCcceEEEEEcCCCcEEEEecC-CC----------eEEEEeCCCCceEEEecCCcc-
Q 023643 185 CWDVES-----SRIKMVFKG---HSDYLHCIVARNSTNQIVTGSE-DG----------TARIWDCKSGKCIKVIDPVKD- 244 (279)
Q Consensus 185 i~d~~~-----~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~-d~----------~i~vwd~~~~~~~~~~~~~~~- 244 (279)
-|-+.. .+.-++|.. +...|.++.++|..++|+.|+. .. -+..|.+-++.+-...-....
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~ 202 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSED 202 (282)
T ss_pred eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCc
Confidence 776532 233344432 4678999999998888777653 11 266777655433222111000
Q ss_pred ----------------c----cccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 245 ----------------K----QLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 245 ----------------~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
. ........|..|..||||..||+...+|.|.+|+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 203 DITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWE 257 (282)
T ss_pred cccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence 0 0012346789999999999999999999999996
No 292
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.04 E-value=4.3e-08 Score=76.16 Aligned_cols=122 Identities=13% Similarity=0.034 Sum_probs=91.0
Q ss_pred ecccceEEEEECCCCCCCCCEEEEecCCC-cEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCC
Q 023643 23 ILTRTVFRTVWGPSKDGSPDTIVIASSDG-SITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGG 101 (279)
Q Consensus 23 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 101 (279)
+|.+.|.-..+.. +++-++.|..|| .+-|+|..++ .+..+...-+.|.++..+|+
T Consensus 357 ~~~~~VrY~r~~~----~~e~~vigt~dgD~l~iyd~~~~--------------------e~kr~e~~lg~I~av~vs~d 412 (668)
T COG4946 357 GKKGGVRYRRIQV----DPEGDVIGTNDGDKLGIYDKDGG--------------------EVKRIEKDLGNIEAVKVSPD 412 (668)
T ss_pred CCCCceEEEEEcc----CCcceEEeccCCceEEEEecCCc--------------------eEEEeeCCccceEEEEEcCC
Confidence 4667788888887 778899999999 8999999973 23445556678999999999
Q ss_pred CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCC
Q 023643 102 NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDS 181 (279)
Q Consensus 102 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 181 (279)
|+ +++.+.....|-+.|++++..... ..... +-|+.+.|+|+++++|-+--+|
T Consensus 413 GK--~~vvaNdr~el~vididngnv~~i----dkS~~---------------------~lItdf~~~~nsr~iAYafP~g 465 (668)
T COG4946 413 GK--KVVVANDRFELWVIDIDNGNVRLI----DKSEY---------------------GLITDFDWHPNSRWIAYAFPEG 465 (668)
T ss_pred Cc--EEEEEcCceEEEEEEecCCCeeEe----ccccc---------------------ceeEEEEEcCCceeEEEecCcc
Confidence 98 899988888888888876422111 11010 1278999999999998876664
Q ss_pred ----eEEEEecCCCcEEE
Q 023643 182 ----CAYCWDVESSRIKM 195 (279)
Q Consensus 182 ----~i~i~d~~~~~~~~ 195 (279)
.|+++|+..++...
T Consensus 466 y~tq~Iklydm~~~Kiy~ 483 (668)
T COG4946 466 YYTQSIKLYDMDGGKIYD 483 (668)
T ss_pred eeeeeEEEEecCCCeEEE
Confidence 68999998766544
No 293
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=1.1e-07 Score=78.93 Aligned_cols=201 Identities=10% Similarity=0.214 Sum_probs=124.4
Q ss_pred EECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccC-eEEEEecCCCCceEEEEe
Q 023643 32 VWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGP-AYDVKFYGGNEDALLLSC 110 (279)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~l~s~ 110 (279)
+|++ .+..+|.|+.+|.|.+.+-. .+.++.++.+... |..+ +.-++. ++|++.
T Consensus 30 c~~s----~~~~vvigt~~G~V~~Ln~s--------------------~~~~~~fqa~~~siv~~L-~~~~~~-~~L~sv 83 (933)
T KOG2114|consen 30 CCSS----STGSVVIGTADGRVVILNSS--------------------FQLIRGFQAYEQSIVQFL-YILNKQ-NFLFSV 83 (933)
T ss_pred EEcC----CCceEEEeeccccEEEeccc--------------------ceeeehheecchhhhhHh-hcccCc-eEEEEE
Confidence 5667 78899999999998777755 3455677777766 4444 343443 388888
Q ss_pred eCCCc-----EEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEE
Q 023643 111 GDDGR-----ICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYC 185 (279)
Q Consensus 111 ~~dg~-----i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 185 (279)
+.|+. +++|+++.........-+.. -.+....++... .++.+++.+.+-+.+++|-.+|.|..
T Consensus 84 ~Ed~~~np~llkiw~lek~~~n~sP~c~~~---~ri~~~~np~~~---------~p~s~l~Vs~~l~~Iv~Gf~nG~V~~ 151 (933)
T KOG2114|consen 84 GEDEQGNPVLLKIWDLEKVDKNNSPQCLYE---HRIFTIKNPTNP---------SPASSLAVSEDLKTIVCGFTNGLVIC 151 (933)
T ss_pred eecCCCCceEEEEecccccCCCCCcceeee---eeeeccCCCCCC---------CcceEEEEEccccEEEEEecCcEEEE
Confidence 87764 89999975422211110000 011111111111 23689999999899999999999999
Q ss_pred EecCC----CcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce-EEEecCCccccccCcceeeeEEEEc
Q 023643 186 WDVES----SRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC-IKVIDPVKDKQLKGVISCVSCITLD 260 (279)
Q Consensus 186 ~d~~~----~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~ 260 (279)
+.-+- +....-......+|+.+++..++..++-...-..|.+|.+....+ ...+ ..|...+.|..|+
T Consensus 152 ~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~l--------d~~G~~lnCss~~ 223 (933)
T KOG2114|consen 152 YKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVL--------DNNGISLNCSSFS 223 (933)
T ss_pred EcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeee--------ccCCccceeeecC
Confidence 85321 111111112357899999998887744444566799999873332 3334 5677788999998
Q ss_pred CCCCEEEEEcCcceEEeCC
Q 023643 261 ASESWLVRVRATNYVILFS 279 (279)
Q Consensus 261 ~~~~~l~~~~~d~~i~~wd 279 (279)
+....+++++.. .+.+||
T Consensus 224 ~~t~qfIca~~e-~l~fY~ 241 (933)
T KOG2114|consen 224 DGTYQFICAGSE-FLYFYD 241 (933)
T ss_pred CCCccEEEecCc-eEEEEc
Confidence 765545555443 355543
No 294
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.99 E-value=1.1e-06 Score=68.26 Aligned_cols=213 Identities=12% Similarity=0.122 Sum_probs=122.8
Q ss_pred CCceeeeccccccccceeeeeec-------ccceEEEEECCCCCCCCCEEEEec-C-CCcEEEEeCCCCCcccccccCCc
Q 023643 2 CGDSTNWDEDAYRKSILKEREIL-------TRTVFRTVWGPSKDGSPDTIVIAS-S-DGSITSYSIPSCISKLPLGLSNS 72 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~l~~~~-~-dg~i~iw~~~~~~~~~~~~~~~~ 72 (279)
++.|.+||.++.+. +.++... ...-..++++| ||++|++.. . +..|.+.|+.+.+....+.....
T Consensus 76 ~d~V~v~D~~t~~~--~~~i~~p~~p~~~~~~~~~~~~ls~----dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~ 149 (352)
T TIGR02658 76 TDYVEVIDPQTHLP--IADIELPEGPRFLVGTYPWMTSLTP----DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC 149 (352)
T ss_pred CCEEEEEECccCcE--EeEEccCCCchhhccCccceEEECC----CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC
Confidence 46789999888743 4444321 12234788999 899888766 4 78999999998764442221110
Q ss_pred ccceee-----------eccccc---------------cccCCccCeEE-EEecC-CCCceEEEEeeCCCcEEEeecCCC
Q 023643 73 KVQQLL-----------GIEPDG---------------FLHGHDGPAYD-VKFYG-GNEDALLLSCGDDGRICGWRWKEF 124 (279)
Q Consensus 73 ~~~~~~-----------~~~~~~---------------~~~~h~~~v~~-~~~~~-~~~~~~l~s~~~dg~i~iw~~~~~ 124 (279)
. .-+. .+.... .+..-..++.. -.|.+ ++. ++..... |+|.+-|+...
T Consensus 150 ~-~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~--~~~vs~e-G~V~~id~~~~ 225 (352)
T TIGR02658 150 Y-HIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR--LVWPTYT-GKIFQIDLSSG 225 (352)
T ss_pred c-EEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc--EEEEecC-CeEEEEecCCC
Confidence 0 0000 000000 01000000000 02344 554 4444444 88888886432
Q ss_pred ccCcceeeeccCcccceEEeec-CCCCCccccCCCCCCceeEEEcCCCCeEEEec----------CCCeEEEEecCCCcE
Q 023643 125 TESKVPINLQGNHVKPVLDLVN-HQHKGPWGALSPVPENNAIAVDPQGGAIFSAA----------GDSCAYCWDVESSRI 193 (279)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~d~~i~i~d~~~~~~ 193 (279)
..... ..+.... ......|. .....-++++|+++.+++.. ..+.|-++|..+++.
T Consensus 226 ~~~~~----------~~~~~~~~~~~~~~wr----P~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv 291 (352)
T TIGR02658 226 DAKFL----------PAIEAFTEAEKADGWR----PGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR 291 (352)
T ss_pred cceec----------ceeeeccccccccccC----CCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE
Confidence 11000 0000000 00000000 01233489999999888843 225799999999999
Q ss_pred EEEeecCCcceEEEEEcCCCc-EEEEec-CCCeEEEEeCCCCceEEEe
Q 023643 194 KMVFKGHSDYLHCIVARNSTN-QIVTGS-EDGTARIWDCKSGKCIKVI 239 (279)
Q Consensus 194 ~~~~~~~~~~i~~i~~~~~~~-~l~~~~-~d~~i~vwd~~~~~~~~~~ 239 (279)
+..+.. ...+..++++||++ +|++.+ .++.|.++|..+++.+..+
T Consensus 292 i~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 292 LRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 998874 45788999999998 777666 6888999999999999988
No 295
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.96 E-value=1.1e-09 Score=91.05 Aligned_cols=187 Identities=12% Similarity=0.090 Sum_probs=129.7
Q ss_pred eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643 18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK 97 (279)
Q Consensus 18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 97 (279)
.+.+..|....+|++|+- +.+.|+.|+..|.|+++++.+ +........|..+|+-+.
T Consensus 1094 w~~frd~~~~fTc~afs~----~~~hL~vG~~~Geik~~nv~s-------------------G~~e~s~ncH~SavT~ve 1150 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSG----GTNHLAVGSHAGEIKIFNVSS-------------------GSMEESVNCHQSAVTLVE 1150 (1516)
T ss_pred chhhhccccceeeEEeec----CCceEEeeeccceEEEEEccC-------------------cccccccccccccccccc
Confidence 456677889999999999 899999999999999999998 566677788999999999
Q ss_pred ecCCCCceEEEEeeCCC-cEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEE
Q 023643 98 FYGGNEDALLLSCGDDG-RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFS 176 (279)
Q Consensus 98 ~~~~~~~~~l~s~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 176 (279)
-+.++. .+|.+++... -..+|++.. .......+.. -.++.|+.....-+.
T Consensus 1151 Ps~dgs-~~Ltsss~S~PlsaLW~~~s--~~~~~Hsf~e--------------------------d~~vkFsn~~q~r~~ 1201 (1516)
T KOG1832|consen 1151 PSVDGS-TQLTSSSSSSPLSALWDASS--TGGPRHSFDE--------------------------DKAVKFSNSLQFRAL 1201 (1516)
T ss_pred ccCCcc-eeeeeccccCchHHHhcccc--ccCccccccc--------------------------cceeehhhhHHHHHh
Confidence 888887 2344444443 456899753 2222222222 357788876555566
Q ss_pred ecCCCeEEEEecCCCcEEEEe-ec---CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcce
Q 023643 177 AAGDSCAYCWDVESSRIKMVF-KG---HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVIS 252 (279)
Q Consensus 177 ~~~d~~i~i~d~~~~~~~~~~-~~---~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 252 (279)
|+.-....+||+.++.++.++ .+ .+..-.+..|+|+..+++ .|| .+||++..+.++.+.. .+.
T Consensus 1202 gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~--------ft~ 1268 (1516)
T KOG1832|consen 1202 GTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQ--------FTD 1268 (1516)
T ss_pred cccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhh--------hee
Confidence 666677899999998777663 21 122236778999888887 466 5699998877777632 221
Q ss_pred eeeEEEEcCCCCEEEEEc
Q 023643 253 CVSCITLDASESWLVRVR 270 (279)
Q Consensus 253 ~v~~~~~~~~~~~l~~~~ 270 (279)
.+ .=.|+|+|.-++..+
T Consensus 1269 ~~-~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1269 YG-GGGFHPSGNEVIINS 1285 (1516)
T ss_pred cc-cccccCCCceEEeec
Confidence 11 124777776666544
No 296
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2.2e-07 Score=70.77 Aligned_cols=84 Identities=6% Similarity=-0.026 Sum_probs=68.7
Q ss_pred eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643 18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK 97 (279)
Q Consensus 18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 97 (279)
..-+..|...|..++|+|. +.-++..++.+.+|+|.|+++ ...+..+..+ ..+++++
T Consensus 186 sq~lp~~g~~IrdlafSp~---~~GLl~~asl~nkiki~dlet-------------------~~~vssy~a~-~~~wSC~ 242 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPF---NEGLLGLASLGNKIKIMDLET-------------------SCVVSSYIAY-NQIWSCC 242 (463)
T ss_pred hhcccccchhhhhhccCcc---ccceeeeeccCceEEEEeccc-------------------ceeeeheecc-CCceeee
Confidence 3456677889999999993 344888999999999999998 4445555556 7899999
Q ss_pred ecCCCCceEEEEeeCCCcEEEeecCCCc
Q 023643 98 FYGGNEDALLLSCGDDGRICGWRWKEFT 125 (279)
Q Consensus 98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 125 (279)
|.-+.. +++..|-..|.|.+||++..+
T Consensus 243 wDlde~-h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 243 WDLDER-HVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred eccCCc-ceeEEeccCceEEEEEccCCC
Confidence 998886 799999999999999998643
No 297
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=3.2e-08 Score=80.69 Aligned_cols=196 Identities=8% Similarity=0.033 Sum_probs=134.2
Q ss_pred eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643 19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF 98 (279)
Q Consensus 19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 98 (279)
+++.+|...|.-+.|+. +.+.|-+...+|.|.+|-+..+. .-...+-.....-|.+++|
T Consensus 65 QtLeGH~~sV~vvTWNe----~~QKLTtSDt~GlIiVWmlykgs-----------------W~EEMiNnRnKSvV~SmsW 123 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNE----NNQKLTTSDTSGLIIVWMLYKGS-----------------WCEEMINNRNKSVVVSMSW 123 (1189)
T ss_pred hhhccCcceEEEEEecc----ccccccccCCCceEEEEeeeccc-----------------HHHHHhhCcCccEEEEEEE
Confidence 57889999999999999 78889999999999999998631 1111112235567999999
Q ss_pred cCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec
Q 023643 99 YGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA 178 (279)
Q Consensus 99 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 178 (279)
..+|. .+.....||.|.+=.++-.+ ..-..+++.+ ...+.|++|.+.++.+-
T Consensus 124 n~dG~--kIcIvYeDGavIVGsvdGNR--IwgKeLkg~~------------------------l~hv~ws~D~~~~Lf~~ 175 (1189)
T KOG2041|consen 124 NLDGT--KICIVYEDGAVIVGSVDGNR--IWGKELKGQL------------------------LAHVLWSEDLEQALFKK 175 (1189)
T ss_pred cCCCc--EEEEEEccCCEEEEeeccce--ecchhcchhe------------------------ccceeecccHHHHHhhh
Confidence 99998 89999999998776553211 1111112211 35678999999888888
Q ss_pred CCCeEEEEecCCC-------cEEEE----eecCCcceEEEEEc--------CCCcEEEEecCCCeEEEEeCCCCceEEEe
Q 023643 179 GDSCAYCWDVESS-------RIKMV----FKGHSDYLHCIVAR--------NSTNQIVTGSEDGTARIWDCKSGKCIKVI 239 (279)
Q Consensus 179 ~d~~i~i~d~~~~-------~~~~~----~~~~~~~i~~i~~~--------~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 239 (279)
..|.+++||.... .+.-. +......|-.+.|. |+...|+.+-.+|.+.+..-.+......+
T Consensus 176 ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~ 255 (1189)
T KOG2041|consen 176 ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVV 255 (1189)
T ss_pred cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEE
Confidence 8999999997632 11111 11112234445543 47778999999999888754443333333
Q ss_pred cCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643 240 DPVKDKQLKGVISCVSCITLDASESWLVRVRAT 272 (279)
Q Consensus 240 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 272 (279)
.....+..+.|+++|..||.++.+
T Consensus 256 ---------dtgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 256 ---------DTGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred ---------ecccEeecceecCCCcEEEEccCc
Confidence 222568899999999999998764
No 298
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.91 E-value=5.2e-07 Score=77.83 Aligned_cols=221 Identities=10% Similarity=0.039 Sum_probs=130.9
Q ss_pred cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643 26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA 105 (279)
Q Consensus 26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 105 (279)
..|.++.|.. +++-++.+...|.|.+-|..+.. +.....-...|.+++|+|+++
T Consensus 69 ~~i~s~~fl~----d~~~i~v~~~~G~iilvd~et~~--------------------~eivg~vd~GI~aaswS~Dee-- 122 (1265)
T KOG1920|consen 69 DEIVSVQFLA----DTNSICVITALGDIILVDPETLE--------------------LEIVGNVDNGISAASWSPDEE-- 122 (1265)
T ss_pred cceEEEEEec----ccceEEEEecCCcEEEEcccccc--------------------eeeeeeccCceEEEeecCCCc--
Confidence 5789999988 78888889999999998887632 112222456799999999998
Q ss_pred EEEEeeCCCcEEEeecCCCccCcceee---------eccCcccceEEeecCCC-CCccccCCC---------CCCceeEE
Q 023643 106 LLLSCGDDGRICGWRWKEFTESKVPIN---------LQGNHVKPVLDLVNHQH-KGPWGALSP---------VPENNAIA 166 (279)
Q Consensus 106 ~l~s~~~dg~i~iw~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~i~~~~ 166 (279)
.++.....+++.+-.-.-..-...... ....-.+.-..+..... ..+.....+ ...=++|.
T Consensus 123 ~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~Is 202 (1265)
T KOG1920|consen 123 LLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSIS 202 (1265)
T ss_pred EEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEE
Confidence 888888777776544210000000000 00000000000000000 000000000 11225789
Q ss_pred EcCCCCeEEE-----ecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEec---CCCeEEEEeCCCCceEEE
Q 023643 167 VDPQGGAIFS-----AAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS---EDGTARIWDCKSGKCIKV 238 (279)
Q Consensus 167 ~~~~~~~l~~-----~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~d~~i~vwd~~~~~~~~~ 238 (279)
|--||.++++ ......|++||.+ +.+-..-....+.-.+++|-|.|..+++-. .|+.|.+|. ++|..-..
T Consensus 203 WRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~ 280 (1265)
T KOG1920|consen 203 WRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGE 280 (1265)
T ss_pred EccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccc
Confidence 9999999988 3333789999976 433333222333345789999999988753 466799988 45544333
Q ss_pred ecCCccccccCcceeeeEEEEcCCCCEEEE---EcCcceEEeC
Q 023643 239 IDPVKDKQLKGVISCVSCITLDASESWLVR---VRATNYVILF 278 (279)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---~~~d~~i~~w 278 (279)
+.... ......|..++|+.++..||+ ......|.+|
T Consensus 281 f~l~~----p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 281 FVLPF----PLDEKEVEELAWNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred cccCC----cccccchheeeecCCCCceeeeecccccceEEEE
Confidence 32211 223334899999999999987 4555568888
No 299
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.91 E-value=1.2e-06 Score=65.54 Aligned_cols=212 Identities=13% Similarity=0.096 Sum_probs=118.3
Q ss_pred CCceeeeccccccccceeeeeec--ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643 2 CGDSTNWDEDAYRKSILKEREIL--TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG 79 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 79 (279)
+|+|..||+++++. +-....- .....+. ..+ ++..+++++.++.|..||..+++
T Consensus 2 ~g~l~~~d~~tG~~--~W~~~~~~~~~~~~~~-~~~----~~~~v~~~~~~~~l~~~d~~tG~----------------- 57 (238)
T PF13360_consen 2 DGTLSALDPRTGKE--LWSYDLGPGIGGPVAT-AVP----DGGRVYVASGDGNLYALDAKTGK----------------- 57 (238)
T ss_dssp TSEEEEEETTTTEE--EEEEECSSSCSSEEET-EEE----ETTEEEEEETTSEEEEEETTTSE-----------------
T ss_pred CCEEEEEECCCCCE--EEEEECCCCCCCccce-EEE----eCCEEEEEcCCCEEEEEECCCCC-----------------
Confidence 68999999876643 3333211 1122211 222 45677777899999999998853
Q ss_pred ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceee-eccC-cccceEEeecCCCCCccccCC
Q 023643 80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPIN-LQGN-HVKPVLDLVNHQHKGPWGALS 157 (279)
Q Consensus 80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~ 157 (279)
.+-.... .+++...-.. .+. .++.+..++.++.+|..++.. .-. .... ....+
T Consensus 58 --~~W~~~~-~~~~~~~~~~-~~~--~v~v~~~~~~l~~~d~~tG~~---~W~~~~~~~~~~~~---------------- 112 (238)
T PF13360_consen 58 --VLWRFDL-PGPISGAPVV-DGG--RVYVGTSDGSLYALDAKTGKV---LWSIYLTSSPPAGV---------------- 112 (238)
T ss_dssp --EEEEEEC-SSCGGSGEEE-ETT--EEEEEETTSEEEEEETTTSCE---EEEEEE-SSCTCST----------------
T ss_pred --EEEEeec-cccccceeee-ccc--ccccccceeeeEecccCCcce---eeeecccccccccc----------------
Confidence 2222221 1110000111 233 667777888999999765422 111 0100 00000
Q ss_pred CCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcc----------eEEEEEcCCCcEEEEecCCCe-EE
Q 023643 158 PVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDY----------LHCIVARNSTNQIVTGSEDGT-AR 226 (279)
Q Consensus 158 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----------i~~i~~~~~~~~l~~~~~d~~-i~ 226 (279)
.......+ .+..++++..++.|..+|+++|+.+......... +..-....++ .++.++.++. +.
T Consensus 113 --~~~~~~~~--~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~ 187 (238)
T PF13360_consen 113 --RSSSSPAV--DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVA 187 (238)
T ss_dssp --B--SEEEE--ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEE
T ss_pred --ccccCceE--ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEE
Confidence 00122233 3678888888999999999999998887654322 1122222234 6666777775 56
Q ss_pred EEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 227 IWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 227 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+ |+.+++.+.... ...+... ..+++..|+.++.++.+..||
T Consensus 188 ~-d~~tg~~~w~~~----------~~~~~~~-~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 188 V-DLATGEKLWSKP----------ISGIYSL-PSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp E-ETTTTEEEEEEC----------SS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred E-ECCCCCEEEEec----------CCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence 6 999998665332 1112221 345677788777889998875
No 300
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.90 E-value=5.8e-06 Score=62.09 Aligned_cols=193 Identities=17% Similarity=0.198 Sum_probs=116.2
Q ss_pred EEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEec-CCCCceEEE
Q 023643 30 RTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFY-GGNEDALLL 108 (279)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~l~ 108 (279)
++.|.+. ++.++++--..+.|..|+..+.. . ..+.... ...+.+. +++ .|+
T Consensus 4 gp~~d~~---~g~l~~~D~~~~~i~~~~~~~~~-------------------~-~~~~~~~--~~G~~~~~~~g---~l~ 55 (246)
T PF08450_consen 4 GPVWDPR---DGRLYWVDIPGGRIYRVDPDTGE-------------------V-EVIDLPG--PNGMAFDRPDG---RLY 55 (246)
T ss_dssp EEEEETT---TTEEEEEETTTTEEEEEETTTTE-------------------E-EEEESSS--EEEEEEECTTS---EEE
T ss_pred ceEEECC---CCEEEEEEcCCCEEEEEECCCCe-------------------E-EEEecCC--CceEEEEccCC---EEE
Confidence 4677773 67777887788999999998731 1 1122111 6677777 564 566
Q ss_pred EeeCCCcEEEeecCCCccCcceeeec-cCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCC-------
Q 023643 109 SCGDDGRICGWRWKEFTESKVPINLQ-GNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD------- 180 (279)
Q Consensus 109 s~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------- 180 (279)
.+...+ +.++|+.+... ....... +.... ...+.++++|+|++.++....
T Consensus 56 v~~~~~-~~~~d~~~g~~-~~~~~~~~~~~~~--------------------~~~ND~~vd~~G~ly~t~~~~~~~~~~~ 113 (246)
T PF08450_consen 56 VADSGG-IAVVDPDTGKV-TVLADLPDGGVPF--------------------NRPNDVAVDPDGNLYVTDSGGGGASGID 113 (246)
T ss_dssp EEETTC-EEEEETTTTEE-EEEEEEETTCSCT--------------------EEEEEEEE-TTS-EEEEEECCBCTTCGG
T ss_pred EEEcCc-eEEEecCCCcE-EEEeeccCCCccc--------------------CCCceEEEcCCCCEEEEecCCCcccccc
Confidence 665544 55558654311 1111111 11000 125899999999977765443
Q ss_pred -CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEE-EEecCCCeEEEEeCCCCce----EEEecCCccccccCcceee
Q 023643 181 -SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQI-VTGSEDGTARIWDCKSGKC----IKVIDPVKDKQLKGVISCV 254 (279)
Q Consensus 181 -~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~v 254 (279)
|.|..++.. ++...... .-.....|+|+|+++.| ++-+..+.|..|++..... ...+.. +.......
T Consensus 114 ~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~g~p 186 (246)
T PF08450_consen 114 PGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFID-----FPGGPGYP 186 (246)
T ss_dssp SEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE------SSSSCEE
T ss_pred ccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEE-----cCCCCcCC
Confidence 568888877 55444333 34567899999999865 5778889999999863221 112210 01222346
Q ss_pred eEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 255 SCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 255 ~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
-.++++.+|++.++....+.|.++|
T Consensus 187 DG~~vD~~G~l~va~~~~~~I~~~~ 211 (246)
T PF08450_consen 187 DGLAVDSDGNLWVADWGGGRIVVFD 211 (246)
T ss_dssp EEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred CcceEcCCCCEEEEEcCCCEEEEEC
Confidence 7899999999888877777777664
No 301
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=4.6e-07 Score=72.94 Aligned_cols=170 Identities=9% Similarity=0.030 Sum_probs=93.6
Q ss_pred ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEE-ecCC--CcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVI-ASSD--GSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~-~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.|.++|+.+++...+.. ..+......|+| |++.|+. .+.+ ..|.++++.++.
T Consensus 214 ~Iyv~dl~tg~~~~lt~---~~g~~~~~~~SP----DG~~la~~~~~~g~~~Iy~~dl~~g~------------------ 268 (419)
T PRK04043 214 TLYKYNLYTGKKEKIAS---SQGMLVVSDVSK----DGSKLLLTMAPKGQPDIYLYDTNTKT------------------ 268 (419)
T ss_pred EEEEEECCCCcEEEEec---CCCcEEeeEECC----CCCEEEEEEccCCCcEEEEEECCCCc------------------
Confidence 46666766654433332 334566788999 8876654 3334 457777776531
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEee-CCCc--EEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCG-DDGR--ICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS 157 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (279)
. ..+..+........|+|+++ .|+-.+ ..+. |.+.|+...... .....+
T Consensus 269 -~-~~LT~~~~~d~~p~~SPDG~--~I~F~Sdr~g~~~Iy~~dl~~g~~~--rlt~~g---------------------- 320 (419)
T PRK04043 269 -L-TQITNYPGIDVNGNFVEDDK--RIVFVSDRLGYPNIFMKKLNSGSVE--QVVFHG---------------------- 320 (419)
T ss_pred -E-EEcccCCCccCccEECCCCC--EEEEEECCCCCceEEEEECCCCCeE--eCccCC----------------------
Confidence 1 12222222233457999998 444443 4444 555554322110 011111
Q ss_pred CCCCceeEEEcCCCCeEEEecCC---------CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC-C--eE
Q 023643 158 PVPENNAIAVDPQGGAIFSAAGD---------SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED-G--TA 225 (279)
Q Consensus 158 ~~~~i~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-~--~i 225 (279)
.....|+|+|+.++..... ..|.+.|+.+++... +... .......|+|+|+.|+..+.+ + .+
T Consensus 321 ----~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L 394 (419)
T PRK04043 321 ----KNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYLGNQSAL 394 (419)
T ss_pred ----CcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEccCCcEEE
Confidence 0123799999987665543 368889998876543 3322 223357899999987665532 2 36
Q ss_pred EEEeCCC
Q 023643 226 RIWDCKS 232 (279)
Q Consensus 226 ~vwd~~~ 232 (279)
.+.++..
T Consensus 395 ~~~~l~g 401 (419)
T PRK04043 395 GIIRLNY 401 (419)
T ss_pred EEEecCC
Confidence 6666643
No 302
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.88 E-value=1.7e-06 Score=68.02 Aligned_cols=237 Identities=11% Similarity=0.055 Sum_probs=139.3
Q ss_pred ceeeeccccccccceeeeeecccc--eE-EEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 4 DSTNWDEDAYRKSILKEREILTRT--VF-RTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 4 ~v~iw~~~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.+.+||..++ .++..+.+...+ .+ -+.|+- +..++|-. ....+.|+++ +.... .
T Consensus 109 ~~~vwd~~sg--~iv~sf~~~~q~~~~Wp~~k~s~----~D~y~ARv-v~~sl~i~e~-t~n~~---------------~ 165 (561)
T COG5354 109 NVFVWDIASG--MIVFSFNGISQPYLGWPVLKFSI----DDKYVARV-VGSSLYIHEI-TDNIE---------------E 165 (561)
T ss_pred ceeEEeccCc--eeEeeccccCCcccccceeeeee----cchhhhhh-ccCeEEEEec-CCccc---------------c
Confidence 5789998887 446667666655 55 678888 66766655 3347999997 32111 1
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEE-----eeCCCcEEEeecCCCccCcc--eeeecc-----Cccc---------
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLS-----CGDDGRICGWRWKEFTESKV--PINLQG-----NHVK--------- 139 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iw~~~~~~~~~~--~~~~~~-----~~~~--------- 139 (279)
.+.+.++ ...+....|+|.++...|+. .+.++++++|.+........ .....+ +...
T Consensus 166 ~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t 243 (561)
T COG5354 166 HPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMT 243 (561)
T ss_pred Cchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEE
Confidence 1222222 24467777777644334442 35677788887753211000 000000 0000
Q ss_pred ------------ceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe--cCCCeEEEEecCCCcEEEEeecCCcceE
Q 023643 140 ------------PVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA--AGDSCAYCWDVESSRIKMVFKGHSDYLH 205 (279)
Q Consensus 140 ------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~i~ 205 (279)
.++-+...+...+... ...+.|...+|.|.++.+++. ..+..+.++|++.. ....+ ....=.
T Consensus 244 ~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rN 319 (561)
T COG5354 244 HTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRN 319 (561)
T ss_pred eeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccc
Confidence 0111111111111111 334568999999998877654 57888999999855 44433 344556
Q ss_pred EEEEcCCCcEEEEecCC---CeEEEEeCCCCceEE-EecCCccccccCcceeeeEEEEcCCCCEEEEEc------CcceE
Q 023643 206 CIVARNSTNQIVTGSED---GTARIWDCKSGKCIK-VIDPVKDKQLKGVISCVSCITLDASESWLVRVR------ATNYV 275 (279)
Q Consensus 206 ~i~~~~~~~~l~~~~~d---~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i 275 (279)
.+.|+|.+++++.++.| |.+-+||........ .+. +. ..+-+.|+||++++.+.. .|..+
T Consensus 320 T~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~--------~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i 389 (561)
T COG5354 320 TIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN--------GL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSI 389 (561)
T ss_pred cccccCcccEEEEecCCccccceEEeccCCceEEEEEee--------cC--CceEeeccCCceEEEecCCCcccccCcce
Confidence 78899999999987754 569999987654433 442 22 234567999999888763 37788
Q ss_pred EeCC
Q 023643 276 ILFS 279 (279)
Q Consensus 276 ~~wd 279 (279)
.+||
T Consensus 390 ~l~~ 393 (561)
T COG5354 390 KLWD 393 (561)
T ss_pred EEEE
Confidence 8885
No 303
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.87 E-value=6.5e-07 Score=71.73 Aligned_cols=132 Identities=13% Similarity=0.076 Sum_probs=85.3
Q ss_pred EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEE
Q 023643 106 LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYC 185 (279)
Q Consensus 106 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 185 (279)
.++.++.+|.+..+|.++.+ ..-.... .. ...... .+..+++++.+|.++.
T Consensus 243 ~vy~~~~~g~l~a~d~~tG~---~~W~~~~-----------~~-------------~~~p~~--~~~~vyv~~~~G~l~~ 293 (377)
T TIGR03300 243 QVYAVSYQGRVAALDLRSGR---VLWKRDA-----------SS-------------YQGPAV--DDNRLYVTDADGVVVA 293 (377)
T ss_pred EEEEEEcCCEEEEEECCCCc---EEEeecc-----------CC-------------ccCceE--eCCEEEEECCCCeEEE
Confidence 77788889999999986432 1111110 00 011222 4567888889999999
Q ss_pred EecCCCcEEEEeecCCcc-eEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceee-eEEEEcCCC
Q 023643 186 WDVESSRIKMVFKGHSDY-LHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCV-SCITLDASE 263 (279)
Q Consensus 186 ~d~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~ 263 (279)
+|..+++.+......... ...... .+..+++++.+|.|+++|..+++.+..++. +...+ ...++. +
T Consensus 294 ~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~--------~~~~~~~sp~~~--~ 361 (377)
T TIGR03300 294 LDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKT--------DGSGIASPPVVV--G 361 (377)
T ss_pred EECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc--------CCCccccCCEEE--C
Confidence 999999887765322111 111112 367888999999999999999999988742 22221 222222 3
Q ss_pred CEEEEEcCcceEEeC
Q 023643 264 SWLVRVRATNYVILF 278 (279)
Q Consensus 264 ~~l~~~~~d~~i~~w 278 (279)
..|+.++.||.|..|
T Consensus 362 ~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 362 DGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCceEEEe
Confidence 458888899999876
No 304
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=4.9e-07 Score=74.59 Aligned_cols=212 Identities=13% Similarity=0.135 Sum_probs=139.7
Q ss_pred ccceeeeeecccceEEEEECCCCC--------CCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccc
Q 023643 15 KSILKEREILTRTVFRTVWGPSKD--------GSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFL 86 (279)
Q Consensus 15 ~~~~~~~~~~~~~v~~~~~~~~~~--------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (279)
.+.++.++.|...|+.+.|.|... ...-+||++...|.|.+||... ...+..+
T Consensus 45 ~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~-------------------~s~~~~l 105 (1062)
T KOG1912|consen 45 LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL-------------------ASVINWL 105 (1062)
T ss_pred hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh-------------------hhhhhhh
Confidence 356788889999999999998432 1234678888999999999998 5556677
Q ss_pred cCCccCeEEEEecCCCCc--eEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCcee
Q 023643 87 HGHDGPAYDVKFYGGNED--ALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNA 164 (279)
Q Consensus 87 ~~h~~~v~~~~~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 164 (279)
..|.+++..++|.+.... ..|+.-....++.+|+..++ ...-.....+. ...|
T Consensus 106 ~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG---~k~Wk~~ys~~----------------------iLs~ 160 (1062)
T KOG1912|consen 106 SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTG---EKFWKYDYSHE----------------------ILSC 160 (1062)
T ss_pred cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCC---ceeeccccCCc----------------------ceee
Confidence 889999999999874321 36777777889999997654 22222211111 1356
Q ss_pred EEEcC-CCCeEEEecCCCeEEEEecCC-------CcEEEEeecCCc-------------------------ceEEEEEcC
Q 023643 165 IAVDP-QGGAIFSAAGDSCAYCWDVES-------SRIKMVFKGHSD-------------------------YLHCIVARN 211 (279)
Q Consensus 165 ~~~~~-~~~~l~~~~~d~~i~i~d~~~-------~~~~~~~~~~~~-------------------------~i~~i~~~~ 211 (279)
+.++| +.+.+..-+..|.+.+.+..- ++..+.-..|.. ..-.++|+|
T Consensus 161 f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p 240 (1062)
T KOG1912|consen 161 FRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSP 240 (1062)
T ss_pred eeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcCh
Confidence 77777 445666666667766665431 122221111111 011356788
Q ss_pred CCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCC--CCEEEEEcCcceEEeC
Q 023643 212 STNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS--ESWLVRVRATNYVILF 278 (279)
Q Consensus 212 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~w 278 (279)
.-+.++.......+.|+|++-..++.++... .+.+.-+.+-|+ ...|++.-.||.+.+|
T Consensus 241 ~~rn~lfi~~prellv~dle~~~~l~vvpie--------r~~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 241 HWRNILFITFPRELLVFDLEYECCLAVVPIE--------RGGAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred hhhceEEEEeccceEEEcchhhceeEEEEec--------cCCcceeEeccCCCcceEEEEecCCeEEEE
Confidence 7555555567888999999999998888532 233344555554 4679999999999887
No 305
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=5.8e-08 Score=74.88 Aligned_cols=210 Identities=11% Similarity=0.006 Sum_probs=140.9
Q ss_pred ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCC
Q 023643 23 ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGN 102 (279)
Q Consensus 23 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 102 (279)
.|...|+.+.-.. .+++.+++.||.++.|.-..-+. .+.+..++.|-+.+.+++.+-++
T Consensus 7 mhrd~i~hv~~tk-----a~fiiqASlDGh~KFWkKs~isG----------------vEfVKhFraHL~~I~sl~~S~dg 65 (558)
T KOG0882|consen 7 MHRDVITHVFPTK-----AKFIIQASLDGHKKFWKKSRISG----------------VEFVKHFRAHLGVILSLAVSYDG 65 (558)
T ss_pred cccceeeeEeeeh-----hheEEeeecchhhhhcCCCCccc----------------eeehhhhHHHHHHHHhhhccccc
Confidence 4777777776554 68999999999999998764111 35566778899999999999998
Q ss_pred CceEEEEeeC-CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCC--eEEE-ec
Q 023643 103 EDALLLSCGD-DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG--AIFS-AA 178 (279)
Q Consensus 103 ~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~-~~ 178 (279)
- ++.|.+. |..++++|+.+..-...+....- . . --++..++... .+++ ..
T Consensus 66 ~--L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~l---P---------g------------~a~wv~skGd~~s~IAVs~~ 119 (558)
T KOG0882|consen 66 W--LFRSVEDPDHSVKVFDVENFDMINMIKLVDL---P---------G------------FAEWVTSKGDKISLIAVSLF 119 (558)
T ss_pred e--eEeeccCcccceeEEEeeccchhhhcccccC---C---------C------------ceEEecCCCCeeeeEEeecc
Confidence 7 8889777 99999999875321111000000 0 0 01112222111 3333 34
Q ss_pred CCCeEEEEecCCCc-EE-EEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC------CceEEEecCCc-cccccC
Q 023643 179 GDSCAYCWDVESSR-IK-MVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS------GKCIKVIDPVK-DKQLKG 249 (279)
Q Consensus 179 ~d~~i~i~d~~~~~-~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~------~~~~~~~~~~~-~~~~~~ 249 (279)
.++.|.++|-...- +. ..-+-|..+|.++.+.+.+..+++....|.|.-|.... .+....+.... ...+..
T Consensus 120 ~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K 199 (558)
T KOG0882|consen 120 KSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPK 199 (558)
T ss_pred cCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccc
Confidence 57899999976543 33 33345999999999999999999999999999998762 11111111110 012233
Q ss_pred cceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 250 VISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 250 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
......++.|+|++..+.+-+.|..|++++
T Consensus 200 ~Kt~pts~Efsp~g~qistl~~DrkVR~F~ 229 (558)
T KOG0882|consen 200 AKTEPTSFEFSPDGAQISTLNPDRKVRGFV 229 (558)
T ss_pred cccCccceEEccccCcccccCcccEEEEEE
Confidence 445678999999999999999999998863
No 306
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.84 E-value=1.2e-07 Score=79.39 Aligned_cols=180 Identities=13% Similarity=0.140 Sum_probs=119.6
Q ss_pred CCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEee
Q 023643 41 PDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWR 120 (279)
Q Consensus 41 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~ 120 (279)
+..++-|+-...+..+|+++. ...+...-..+.|.-++. ++. ++.+|...|+|.+-|
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~-------------------~e~r~~~v~a~~v~imR~--Nnr--~lf~G~t~G~V~LrD 203 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTE-------------------KETRTTNVSASGVTIMRY--NNR--NLFCGDTRGTVFLRD 203 (1118)
T ss_pred Ccceeecchhhheeeeecccc-------------------eeeeeeeccCCceEEEEe--cCc--EEEeecccceEEeec
Confidence 455666666666777777762 222222222233555554 444 899999999999999
Q ss_pred cCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC---------CCeEEEEecCCC
Q 023643 121 WKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG---------DSCAYCWDVESS 191 (279)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~ 191 (279)
++.. +.+..+..+. . .-.+|+-.|+.|++++. |..|++||++..
T Consensus 204 ~~s~---~~iht~~aHs-~-----------------------siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm 256 (1118)
T KOG1275|consen 204 PNSF---ETIHTFDAHS-G-----------------------SISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMM 256 (1118)
T ss_pred CCcC---ceeeeeeccc-c-----------------------ceeeeeccCCeEEEeecccccccccccchhhhhhhhhh
Confidence 7654 3333333321 1 12245667888888764 667899999988
Q ss_pred cEEEEeecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCC-Cce---EEEecCCccccccCcceeeeEEEEcCCCCEE
Q 023643 192 RIKMVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKS-GKC---IKVIDPVKDKQLKGVISCVSCITLDASESWL 266 (279)
Q Consensus 192 ~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~-~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 266 (279)
+.+.-+.-+.++ .-+.|+|. ...++.++..|...+-|..+ +.+ +..+ ......+.++++++++..|
T Consensus 257 ral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v--------~p~~s~i~~fDiSsn~~al 327 (1118)
T KOG1275|consen 257 RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMV--------NPNGSGISAFDISSNGDAL 327 (1118)
T ss_pred hccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEE--------ccCCCcceeEEecCCCceE
Confidence 777666555544 56778886 67788889999999988332 111 2222 2233458999999999999
Q ss_pred EEEcCcceEEeCC
Q 023643 267 VRVRATNYVILFS 279 (279)
Q Consensus 267 ~~~~~d~~i~~wd 279 (279)
|.|..+|.|.+|.
T Consensus 328 afgd~~g~v~~wa 340 (1118)
T KOG1275|consen 328 AFGDHEGHVNLWA 340 (1118)
T ss_pred EEecccCcEeeec
Confidence 9999999999994
No 307
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.83 E-value=1.1e-06 Score=69.13 Aligned_cols=199 Identities=12% Similarity=0.109 Sum_probs=119.4
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEec-----------CCCcEEEEeCCCCCcccccccC
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS-----------SDGSITSYSIPSCISKLPLGLS 70 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-----------~dg~i~iw~~~~~~~~~~~~~~ 70 (279)
++.+++|.+-.... +.+.......=..+.|.+ .|++|+.-- ....+.|+++..
T Consensus 201 pa~~~i~sIp~~s~--l~tk~lfk~~~~qLkW~~----~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e---------- 264 (561)
T COG5354 201 PAMVRILSIPKNSV--LVTKNLFKVSGVQLKWQV----LGKYLLVLVMTHTKSNKSYFGESNLYLLRITE---------- 264 (561)
T ss_pred CcEEEEEEccCCCe--eeeeeeEeecccEEEEec----CCceEEEEEEEeeecccceeccceEEEEeecc----------
Confidence 45566776543322 222222223334678888 677665421 113455666553
Q ss_pred CcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCC
Q 023643 71 NSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHK 150 (279)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (279)
+.+.....-.++|...+|.|.+++--+++|..+.++.++|++.. ...... ..
T Consensus 265 ----------~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N----l~~~~P-e~------------- 316 (561)
T COG5354 265 ----------RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN----LRFYFP-EQ------------- 316 (561)
T ss_pred ----------cccceeccccccceeeeecccCCceeEEecccccceeecccccc----eEEecC-Cc-------------
Confidence 22233335578999999999988334455568889999998642 111111 11
Q ss_pred CccccCCCCCCceeEEEcCCCCeEEEecCC---CeEEEEecCCCcEEE-EeecCCcceEEEEEcCCCcEEEEec------
Q 023643 151 GPWGALSPVPENNAIAVDPQGGAIFSAAGD---SCAYCWDVESSRIKM-VFKGHSDYLHCIVARNSTNQIVTGS------ 220 (279)
Q Consensus 151 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~------ 220 (279)
.=+.+.|+|.+++++.++-| |.|-+||......+. .+.+.. .+-+.|+|++.++.+..
T Consensus 317 ----------~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~ 384 (561)
T COG5354 317 ----------KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLR 384 (561)
T ss_pred ----------ccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccc
Confidence 12567899999998887654 789999987554333 555433 34567999999987764
Q ss_pred CCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643 221 EDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT 272 (279)
Q Consensus 221 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 272 (279)
.|..|+|||+...+ .. ..+.+.|.|.+++..+.+.+
T Consensus 385 ~Dn~i~l~~v~g~~-~f---------------el~~~~W~p~~~~~ttsSs~ 420 (561)
T COG5354 385 VDNSIKLWDVYGAK-VF---------------ELTNITWDPSGQYVTTSSSC 420 (561)
T ss_pred cCcceEEEEecCch-hh---------------hhhhccccCCcccceeeccC
Confidence 47889999975332 22 12455666666655555443
No 308
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=1.4e-06 Score=69.31 Aligned_cols=182 Identities=10% Similarity=0.038 Sum_probs=121.6
Q ss_pred eEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEE
Q 023643 28 VFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALL 107 (279)
Q Consensus 28 v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 107 (279)
-+-+.||| .|.+|++--.-| |.+|--.+ ...++.+. |.+ |.-+.|+|..+ ||
T Consensus 213 etyv~wSP----~GTYL~t~Hk~G-I~lWGG~~-------------------f~r~~RF~-Hp~-Vq~idfSP~Ek--YL 264 (698)
T KOG2314|consen 213 ETYVRWSP----KGTYLVTFHKQG-IALWGGES-------------------FDRIQRFY-HPG-VQFIDFSPNEK--YL 264 (698)
T ss_pred eeeEEecC----CceEEEEEeccc-eeeecCcc-------------------HHHHHhcc-CCC-ceeeecCCccc--eE
Confidence 35688999 899999987766 78897665 34444443 655 88999999998 99
Q ss_pred EEeeC-----------CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEE
Q 023643 108 LSCGD-----------DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFS 176 (279)
Q Consensus 108 ~s~~~-----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 176 (279)
+|-+. ...+.|||+.++........+... ... -.-+.||.|++++|-
T Consensus 265 VT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~--~~~--------------------WP~frWS~DdKy~Ar 322 (698)
T KOG2314|consen 265 VTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSP--YLK--------------------WPIFRWSHDDKYFAR 322 (698)
T ss_pred EEecCCccccCcccCCCceEEEEEccccchhcceeccCCC--ccc--------------------cceEEeccCCceeEE
Confidence 98764 257899999876433322222111 111 135689999999887
Q ss_pred ecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC-----CCeEEEEeCCCCceEEEecCCccccccCcc
Q 023643 177 AAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE-----DGTARIWDCKSGKCIKVIDPVKDKQLKGVI 251 (279)
Q Consensus 177 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 251 (279)
-.. ..|.||+..+..++..-.-.-..|....|+|.++.||-=.. -..+.+-.+.+++.+++-+ -+.
T Consensus 323 m~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n--------lfn 393 (698)
T KOG2314|consen 323 MTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN--------LFN 393 (698)
T ss_pred ecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecc--------cee
Confidence 665 67999998765444433334567888999999888775442 2346677777777766653 232
Q ss_pred eeeeEEEEcCCCCEEEE
Q 023643 252 SCVSCITLDASESWLVR 268 (279)
Q Consensus 252 ~~v~~~~~~~~~~~l~~ 268 (279)
-.=..+-|..+|.+|+.
T Consensus 394 VsDckLhWQk~gdyLcv 410 (698)
T KOG2314|consen 394 VSDCKLHWQKSGDYLCV 410 (698)
T ss_pred eeccEEEeccCCcEEEE
Confidence 22334567788888765
No 309
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.79 E-value=1.6e-05 Score=59.97 Aligned_cols=202 Identities=12% Similarity=0.167 Sum_probs=124.5
Q ss_pred EEEEECCCCCCCCCEEEEecCCCc-EEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEE
Q 023643 29 FRTVWGPSKDGSPDTIVIASSDGS-ITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALL 107 (279)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 107 (279)
-.++.+|. .+..++.+-.-|+ ..+||..++.....+. ..+-+.|.+| -.|+++++ +|
T Consensus 8 H~~a~~p~---~~~avafaRRPG~~~~v~D~~~g~~~~~~~-----------a~~gRHFyGH------g~fs~dG~--~L 65 (305)
T PF07433_consen 8 HGVAAHPT---RPEAVAFARRPGTFALVFDCRTGQLLQRLW-----------APPGRHFYGH------GVFSPDGR--LL 65 (305)
T ss_pred cceeeCCC---CCeEEEEEeCCCcEEEEEEcCCCceeeEEc-----------CCCCCEEecC------EEEcCCCC--EE
Confidence 35566673 5556666665554 5678888743322211 2222445555 36999998 77
Q ss_pred EEee-----CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec----
Q 023643 108 LSCG-----DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA---- 178 (279)
Q Consensus 108 ~s~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---- 178 (279)
++.= ..|.|-|||... ....+..+..+-.. -..+.+.|+++.|+++-
T Consensus 66 ytTEnd~~~g~G~IgVyd~~~--~~~ri~E~~s~GIG----------------------PHel~l~pDG~tLvVANGGI~ 121 (305)
T PF07433_consen 66 YTTENDYETGRGVIGVYDAAR--GYRRIGEFPSHGIG----------------------PHELLLMPDGETLVVANGGIE 121 (305)
T ss_pred EEeccccCCCcEEEEEEECcC--CcEEEeEecCCCcC----------------------hhhEEEcCCCCEEEEEcCCCc
Confidence 7753 358899999862 22333333333222 24667888887777752
Q ss_pred --------------CCCeEEEEecCCCcEEEEee----cCCcceEEEEEcCCCcEEEEecCCCe-------EEEEeCCCC
Q 023643 179 --------------GDSCAYCWDVESSRIKMVFK----GHSDYLHCIVARNSTNQIVTGSEDGT-------ARIWDCKSG 233 (279)
Q Consensus 179 --------------~d~~i~i~d~~~~~~~~~~~----~~~~~i~~i~~~~~~~~l~~~~~d~~-------i~vwd~~~~ 233 (279)
.+.++...|..+++.+.+.. .|...|+.+++.++|..++..-..|. |-+++ .+
T Consensus 122 Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g 199 (305)
T PF07433_consen 122 THPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RG 199 (305)
T ss_pred cCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CC
Confidence 24567778888998887743 37788999999999887776655443 34443 33
Q ss_pred ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEc-CcceEEeCC
Q 023643 234 KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR-ATNYVILFS 279 (279)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd 279 (279)
+.+..+.... .....-...+-+|++++++.++++.+ ..+.+.+||
T Consensus 200 ~~~~~~~~p~-~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d 245 (305)
T PF07433_consen 200 GALRLLPAPE-EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWD 245 (305)
T ss_pred CcceeccCCh-HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence 3333332221 11133446789999999998776555 567788885
No 310
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.78 E-value=2.7e-07 Score=77.29 Aligned_cols=149 Identities=13% Similarity=0.174 Sum_probs=107.8
Q ss_pred cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643 26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA 105 (279)
Q Consensus 26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 105 (279)
..|.-++. +++++.+|...|+|.+-|.++ .+.++++..|++.|..+.. .|+
T Consensus 178 ~~v~imR~------Nnr~lf~G~t~G~V~LrD~~s-------------------~~~iht~~aHs~siSDfDv--~GN-- 228 (1118)
T KOG1275|consen 178 SGVTIMRY------NNRNLFCGDTRGTVFLRDPNS-------------------FETIHTFDAHSGSISDFDV--QGN-- 228 (1118)
T ss_pred CceEEEEe------cCcEEEeecccceEEeecCCc-------------------Cceeeeeeccccceeeeec--cCC--
Confidence 34555554 558999999999999999998 7889999999999987665 454
Q ss_pred EEEEeeC---------CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC-CeEE
Q 023643 106 LLLSCGD---------DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG-GAIF 175 (279)
Q Consensus 106 ~l~s~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~ 175 (279)
.|++||. |.-|++||++..+....+....+ ..-+.|.|.- ..++
T Consensus 229 lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~--------------------------P~flrf~Psl~t~~~ 282 (1118)
T KOG1275|consen 229 LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG--------------------------PQFLRFHPSLTTRLA 282 (1118)
T ss_pred eEEEeecccccccccccchhhhhhhhhhhccCCcccccC--------------------------chhhhhcccccceEE
Confidence 8999885 55678999886533322222222 1234566643 3678
Q ss_pred EecCCCeEEEEecCC-CcE-EE--EeecCCcceEEEEEcCCCcEEEEecCCCeEEEEe
Q 023643 176 SAAGDSCAYCWDVES-SRI-KM--VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWD 229 (279)
Q Consensus 176 ~~~~d~~i~i~d~~~-~~~-~~--~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd 229 (279)
+++..|...+.|..+ +.+ .. .+......+..++++++++.++.|..+|.|.+|-
T Consensus 283 V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 283 VTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 888889999999432 111 22 2233445699999999999999999999999997
No 311
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.75 E-value=2.6e-05 Score=57.82 Aligned_cols=218 Identities=14% Similarity=0.116 Sum_probs=115.7
Q ss_pred eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCC-ccCeEEEEe
Q 023643 20 EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGH-DGPAYDVKF 98 (279)
Q Consensus 20 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~ 98 (279)
.+.+-...+..+.|.|+ ++.++++....+.|..++.+. +.++.+.-. .+-...|++
T Consensus 16 ~l~g~~~e~SGLTy~pd---~~tLfaV~d~~~~i~els~~G--------------------~vlr~i~l~g~~D~EgI~y 72 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPD---TGTLFAVQDEPGEIYELSLDG--------------------KVLRRIPLDGFGDYEGITY 72 (248)
T ss_dssp E-TT--S-EEEEEEETT---TTEEEEEETTTTEEEEEETT----------------------EEEEEE-SS-SSEEEEEE
T ss_pred ECCCccCCccccEEcCC---CCeEEEEECCCCEEEEEcCCC--------------------CEEEEEeCCCCCCceeEEE
Confidence 44445567999999993 455777777888888777652 333333211 245788889
Q ss_pred cCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec
Q 023643 99 YGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA 178 (279)
Q Consensus 99 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 178 (279)
..++. ++++.-.++.+.++++............. -..+... ...+..+..++|+|.++.|+++-
T Consensus 73 ~g~~~--~vl~~Er~~~L~~~~~~~~~~~~~~~~~~------~~~l~~~--------~~~N~G~EGla~D~~~~~L~v~k 136 (248)
T PF06977_consen 73 LGNGR--YVLSEERDQRLYIFTIDDDTTSLDRADVQ------KISLGFP--------NKGNKGFEGLAYDPKTNRLFVAK 136 (248)
T ss_dssp -STTE--EEEEETTTTEEEEEEE----TT--EEEEE------EEE---S-----------SS--EEEEEETTTTEEEEEE
T ss_pred ECCCE--EEEEEcCCCcEEEEEEeccccccchhhce------EEecccc--------cCCCcceEEEEEcCCCCEEEEEe
Confidence 87775 66666678999999985432211111100 0000000 00112368999999988888887
Q ss_pred CCCeEEEEecCC---CcEEEEe--e------cCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCceEEEecCCccc-
Q 023643 179 GDSCAYCWDVES---SRIKMVF--K------GHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDK- 245 (279)
Q Consensus 179 ~d~~i~i~d~~~---~~~~~~~--~------~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~- 245 (279)
...-..+|.+.. ...+... . .....+.+++++|. +++++....+..|..+| .+|+.+..+......
T Consensus 137 E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~ 215 (248)
T PF06977_consen 137 ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFH 215 (248)
T ss_dssp ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGG
T ss_pred CCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCccc
Confidence 666666666653 2222111 1 12335788999995 77888888899999999 678877766543210
Q ss_pred cccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 246 QLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 246 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
.+...-..--+|+|+++|++.+++ +-+..++|
T Consensus 216 gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 216 GLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp G-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred CcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 001111346789999999766554 55665554
No 312
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.72 E-value=2.2e-05 Score=63.29 Aligned_cols=107 Identities=14% Similarity=0.178 Sum_probs=75.4
Q ss_pred eeEEEcC-CCCeEEEe----cCCCe----EEEEecCCCcEEEE--e-ecCCcceEEEEEcCCCcEEEEecCCCeEEEEeC
Q 023643 163 NAIAVDP-QGGAIFSA----AGDSC----AYCWDVESSRIKMV--F-KGHSDYLHCIVARNSTNQIVTGSEDGTARIWDC 230 (279)
Q Consensus 163 ~~~~~~~-~~~~l~~~----~~d~~----i~i~d~~~~~~~~~--~-~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~ 230 (279)
.++.|+- +...+.+. +.+|. -.+|+....+..+. . -...+.+.|++++|+...++.|+.||+|.+||.
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~ 288 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT 288 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence 5666665 33444443 22332 34666655443321 1 136678999999999999999999999999998
Q ss_pred CCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 231 KSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
..+..... ......+.++|+|+|..+++|+..|.+.+||
T Consensus 289 ~~~~t~~~----------ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 289 TRGVTLLA----------KAEFIPTLIAWHPDGAIFVVGSEQGELQCFD 327 (545)
T ss_pred CCCeeeee----------eecccceEEEEcCCCcEEEEEcCCceEEEEE
Confidence 76633322 2224568899999999999999999999997
No 313
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=7.9e-06 Score=68.42 Aligned_cols=200 Identities=9% Similarity=0.081 Sum_probs=116.1
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCC-----cEEEEeCCCCCcccccccCCcccce
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDG-----SITSYSIPSCISKLPLGLSNSKVQQ 76 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~ 76 (279)
||.|.+.+- ....+..+..+...+...-|.-. +.++|++.+.|+ .|+||+++....... .+
T Consensus 44 ~G~V~~Ln~---s~~~~~~fqa~~~siv~~L~~~~---~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s--------P~ 109 (933)
T KOG2114|consen 44 DGRVVILNS---SFQLIRGFQAYEQSIVQFLYILN---KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS--------PQ 109 (933)
T ss_pred cccEEEecc---cceeeehheecchhhhhHhhccc---CceEEEEEeecCCCCceEEEEecccccCCCCC--------cc
Confidence 455555441 11334556666665333333331 446787766554 489999986421110 00
Q ss_pred eeecccccc--ccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccc
Q 023643 77 LLGIEPDGF--LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWG 154 (279)
Q Consensus 77 ~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (279)
....-.+.. ......++.+++.+.+-+ .+|.|-.+|.|..+.-+-.+...........
T Consensus 110 c~~~~ri~~~~np~~~~p~s~l~Vs~~l~--~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~------------------ 169 (933)
T KOG2114|consen 110 CLYEHRIFTIKNPTNPSPASSLAVSEDLK--TIVCGFTNGLVICYKGDILRDRGSRQDYSHR------------------ 169 (933)
T ss_pred eeeeeeeeccCCCCCCCcceEEEEEcccc--EEEEEecCcEEEEEcCcchhccccceeeecc------------------
Confidence 000000111 112456788999998876 8999999999998874322111111111110
Q ss_pred cCCCCCCceeEEEcCCCCe-EEEecCCCeEEEEecCCCcE-EEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC
Q 023643 155 ALSPVPENNAIAVDPQGGA-IFSAAGDSCAYCWDVESSRI-KMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS 232 (279)
Q Consensus 155 ~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~ 232 (279)
...+|+.+++..++.. +++++ -..|.+|.+....+ ...+..|...+.|..+++....+++++ +..+.+|+...
T Consensus 170 ---~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~ 244 (933)
T KOG2114|consen 170 ---GKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDG 244 (933)
T ss_pred ---CCCCceeeEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCC
Confidence 1124899999888876 44444 46799999884443 344677888899999988655455554 45599999887
Q ss_pred CceEEEec
Q 023643 233 GKCIKVID 240 (279)
Q Consensus 233 ~~~~~~~~ 240 (279)
.++-..+.
T Consensus 245 ~~~cfaf~ 252 (933)
T KOG2114|consen 245 RGPCFAFE 252 (933)
T ss_pred cceeeeec
Confidence 66666663
No 314
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.71 E-value=5.3e-06 Score=66.50 Aligned_cols=96 Identities=18% Similarity=0.216 Sum_probs=65.0
Q ss_pred CCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCc
Q 023643 171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGV 250 (279)
Q Consensus 171 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 250 (279)
+..+++++.++.++.+|..+++.+...... . ..... ..+..++.++.+|.|..+|..+++.+...... ..
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~-----~~- 310 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDAS-S-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDEL-----KY- 310 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccC-C-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccc-----cC-
Confidence 457888888999999999999887766521 1 11122 24677888889999999999999887655211 11
Q ss_pred ceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 251 ISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 251 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
........ .+..|++++.+|.++++|
T Consensus 311 -~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 311 -RQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred -CccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 11122222 356788888888888764
No 315
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.70 E-value=5.4e-09 Score=83.87 Aligned_cols=208 Identities=14% Similarity=0.161 Sum_probs=128.7
Q ss_pred ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED 104 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 104 (279)
...+.|+++.-. .+...+++|..+|.|-+-.+.... ........+|..++++++|++-..
T Consensus 56 tqy~kcva~~y~--~d~cIlavG~atG~I~l~s~r~~h-----------------dSs~E~tp~~ar~Ct~lAwneLDt- 115 (783)
T KOG1008|consen 56 TQYVKCVASFYG--NDRCILAVGSATGNISLLSVRHPH-----------------DSSAEVTPGYARPCTSLAWNELDT- 115 (783)
T ss_pred CCCceeehhhcC--CchhhhhhccccCceEEeecCCcc-----------------cccceecccccccccccccccccH-
Confidence 345677776552 134578999999999998887531 111233456888999999999754
Q ss_pred eEEEEee----CCCcEEEeecCCCcc-CcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC
Q 023643 105 ALLLSCG----DDGRICGWRWKEFTE-SKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG 179 (279)
Q Consensus 105 ~~l~s~~----~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 179 (279)
+.||.|- .|..+.|||+...-. ......+.+. ......+++|..+.+++.+|..
T Consensus 116 n~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~---------------------~l~gqns~cwlrd~klvlaGm~ 174 (783)
T KOG1008|consen 116 NHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSS---------------------TLDGQNSVCWLRDTKLVLAGMT 174 (783)
T ss_pred HHHHhhhhhhcccCCccceecccccCCCccccccccc---------------------cccCccccccccCcchhhcccc
Confidence 3566652 367899999865311 1111111110 0112468888888889999999
Q ss_pred CCeEEEEecCCCcEEEEeecCCcceEEEEEcC-CCcEEEEecCCCeEEEEe-CCCC-ceEEEecCCccccccCcceeeeE
Q 023643 180 DSCAYCWDVESSRIKMVFKGHSDYLHCIVARN-STNQIVTGSEDGTARIWD-CKSG-KCIKVIDPVKDKQLKGVISCVSC 256 (279)
Q Consensus 180 d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd-~~~~-~~~~~~~~~~~~~~~~~~~~v~~ 256 (279)
...++++|++.. +.....-.+..+..+..+| .++|+++-. ||.|.+|| .+.- .++..+...+ ......+..
T Consensus 175 sr~~~ifdlRqs-~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~----N~~~~~l~~ 248 (783)
T KOG1008|consen 175 SRSVHIFDLRQS-LDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNE----NKKPKQLFA 248 (783)
T ss_pred cchhhhhhhhhh-hhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCC----CCcccceee
Confidence 999999999843 2221222344567788888 788888766 99999999 4332 2333332111 111225889
Q ss_pred EEEcCCCC-EEEEEc-CcceEEeCC
Q 023643 257 ITLDASES-WLVRVR-ATNYVILFS 279 (279)
Q Consensus 257 ~~~~~~~~-~l~~~~-~d~~i~~wd 279 (279)
++|+|... .+++.+ ..++|+++|
T Consensus 249 ~aycPtrtglla~l~RdS~tIrlyd 273 (783)
T KOG1008|consen 249 LAYCPTRTGLLAVLSRDSITIRLYD 273 (783)
T ss_pred EEeccCCcchhhhhccCcceEEEec
Confidence 99999532 344443 446777764
No 316
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=1.5e-06 Score=71.92 Aligned_cols=161 Identities=12% Similarity=0.132 Sum_probs=120.7
Q ss_pred cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643 24 LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE 103 (279)
Q Consensus 24 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 103 (279)
|...-.++.|+| +.++|-|+.. .|.+-|..+ .+.+..+.-|...|+.+.|.|..-
T Consensus 14 ~~sN~~A~Dw~~-----~GLiAygshs-lV~VVDs~s-------------------~q~iqsie~h~s~V~~VrWap~~~ 68 (1062)
T KOG1912|consen 14 SRSNRNAADWSP-----SGLIAYGSHS-LVSVVDSRS-------------------LQLIQSIELHQSAVTSVRWAPAPS 68 (1062)
T ss_pred CcccccccccCc-----cceEEEecCc-eEEEEehhh-------------------hhhhhccccCccceeEEEeccCCC
Confidence 344567788998 4577777665 688888887 677888888999999999998653
Q ss_pred ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC--CCCeEEEecCCC
Q 023643 104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP--QGGAIFSAAGDS 181 (279)
Q Consensus 104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~ 181 (279)
... .++| ..-.|+++...|
T Consensus 69 --p~~---------------------------------------------------------llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 69 --PRD---------------------------------------------------------LLSPSSSQLLIASADISG 89 (1062)
T ss_pred --chh---------------------------------------------------------ccCccccceeEEeccccC
Confidence 110 0111 123678888899
Q ss_pred eEEEEecCCCcEEEEeecCCcceEEEEEcC---CC-cEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEE
Q 023643 182 CAYCWDVESSRIKMVFKGHSDYLHCIVARN---ST-NQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCI 257 (279)
Q Consensus 182 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~---~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 257 (279)
.|.+||...+..+..+..|..++..++|-+ +. ..|++-....+|.+|+..+|+..... ........|+
T Consensus 90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~--------~ys~~iLs~f 161 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY--------DYSHEILSCF 161 (1062)
T ss_pred cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc--------ccCCcceeee
Confidence 999999999999999998999999999976 23 56777788899999999999998887 3444567888
Q ss_pred EEcC-CCCEEEEEcCcceEE
Q 023643 258 TLDA-SESWLVRVRATNYVI 276 (279)
Q Consensus 258 ~~~~-~~~~l~~~~~d~~i~ 276 (279)
.++| |.+.+..-+..|.+.
T Consensus 162 ~~DPfd~rh~~~l~s~g~vl 181 (1062)
T KOG1912|consen 162 RVDPFDSRHFCVLGSKGFVL 181 (1062)
T ss_pred eeCCCCcceEEEEccCceEE
Confidence 8888 555555555556554
No 317
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=2.1e-06 Score=68.26 Aligned_cols=137 Identities=14% Similarity=0.154 Sum_probs=94.0
Q ss_pred eEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCC
Q 023643 93 AYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG 172 (279)
Q Consensus 93 v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 172 (279)
=+-+.|+|.|. ||+|-..-| |.+|--... .....+. | ..|.-+.|||..+
T Consensus 213 etyv~wSP~GT--YL~t~Hk~G-I~lWGG~~f---~r~~RF~--H----------------------p~Vq~idfSP~Ek 262 (698)
T KOG2314|consen 213 ETYVRWSPKGT--YLVTFHKQG-IALWGGESF---DRIQRFY--H----------------------PGVQFIDFSPNEK 262 (698)
T ss_pred eeeEEecCCce--EEEEEeccc-eeeecCccH---HHHHhcc--C----------------------CCceeeecCCccc
Confidence 45689999998 999988755 888973221 1111111 0 0267889999999
Q ss_pred eEEEecC-----------CCeEEEEecCCCcEEEEeecCC--cceE-EEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE
Q 023643 173 AIFSAAG-----------DSCAYCWDVESSRIKMVFKGHS--DYLH-CIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV 238 (279)
Q Consensus 173 ~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~--~~i~-~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 238 (279)
+|++=+. ...+.|||+++|...+.|.... ..+. -..||.|++++|--.. .+|.||+..+..++..
T Consensus 263 YLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~ 341 (698)
T KOG2314|consen 263 YLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDK 341 (698)
T ss_pred eEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecc
Confidence 9998543 2579999999999999887532 2222 3589999999987665 5699998776433322
Q ss_pred ecCCccccccCcceeeeEEEEcCCCCEEEE
Q 023643 239 IDPVKDKQLKGVISCVSCITLDASESWLVR 268 (279)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 268 (279)
- .-.-..|....|+|.+..||-
T Consensus 342 K--------slki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 342 K--------SLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred c--------ccCCccccCcccCCCcceEEE
Confidence 1 122245778889998887764
No 318
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.63 E-value=6.4e-07 Score=71.79 Aligned_cols=72 Identities=15% Similarity=0.139 Sum_probs=60.8
Q ss_pred CCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC
Q 023643 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG 233 (279)
Q Consensus 160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~ 233 (279)
..+.|++++|+...++.|+.||.|.+||...+..... ...-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 4588999999999999999999999999876633322 24456789999999999999999999999998644
No 319
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.62 E-value=8.2e-05 Score=56.21 Aligned_cols=194 Identities=15% Similarity=0.179 Sum_probs=112.1
Q ss_pred EEECCCCCCCCCEEEEec-----CCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643 31 TVWGPSKDGSPDTIVIAS-----SDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA 105 (279)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 105 (279)
-.|+| ||++|.+.- ..|.|-|||.... .+.+..+..|.-.-..+.+.|+++
T Consensus 56 g~fs~----dG~~LytTEnd~~~g~G~IgVyd~~~~------------------~~ri~E~~s~GIGPHel~l~pDG~-- 111 (305)
T PF07433_consen 56 GVFSP----DGRLLYTTENDYETGRGVIGVYDAARG------------------YRRIGEFPSHGIGPHELLLMPDGE-- 111 (305)
T ss_pred EEEcC----CCCEEEEeccccCCCcEEEEEEECcCC------------------cEEEeEecCCCcChhhEEEcCCCC--
Confidence 57999 999998863 4578999999942 566677777766667788999997
Q ss_pred EEEEeeC-------CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec
Q 023643 106 LLLSCGD-------DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA 178 (279)
Q Consensus 106 ~l~s~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 178 (279)
.|+.+-. .|..++ ++.+....-............-..+.. ..+...|+-++++++|..++..-
T Consensus 112 tLvVANGGI~Thpd~GR~kL-Nl~tM~psL~~ld~~sG~ll~q~~Lp~---------~~~~lSiRHLa~~~~G~V~~a~Q 181 (305)
T PF07433_consen 112 TLVVANGGIETHPDSGRAKL-NLDTMQPSLVYLDARSGALLEQVELPP---------DLHQLSIRHLAVDGDGTVAFAMQ 181 (305)
T ss_pred EEEEEcCCCccCcccCceec-ChhhcCCceEEEecCCCceeeeeecCc---------cccccceeeEEecCCCcEEEEEe
Confidence 5655421 122222 222111111111000011110101100 11223478899999887655543
Q ss_pred CCC-------eEEEEecCCCcEEEEee-------cCCcceEEEEEcCCCcEEEEe-cCCCeEEEEeCCCCceEEEecCCc
Q 023643 179 GDS-------CAYCWDVESSRIKMVFK-------GHSDYLHCIVARNSTNQIVTG-SEDGTARIWDCKSGKCIKVIDPVK 243 (279)
Q Consensus 179 ~d~-------~i~i~d~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~ 243 (279)
..| .+-+++. ++.+..+. .-.+.+-+|++++++.++++. -.-+.+.+||..+++.+......
T Consensus 182 ~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~- 258 (305)
T PF07433_consen 182 YQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP- 258 (305)
T ss_pred cCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC-
Confidence 322 2333432 33233232 234678999999998877554 46778999999999998876432
Q ss_pred cccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643 244 DKQLKGVISCVSCITLDASESWLVRVRA 271 (279)
Q Consensus 244 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 271 (279)
.+..++-.+++ ++++.+.
T Consensus 259 ---------D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 259 ---------DACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred ---------ceeeeeecCCc-eEEeCCC
Confidence 35666666666 5555444
No 320
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.61 E-value=5.4e-08 Score=78.35 Aligned_cols=184 Identities=15% Similarity=0.164 Sum_probs=112.4
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEec----CCCcEEEEeCCCCCcccccccCCccccee
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS----SDGSITSYSIPSCISKLPLGLSNSKVQQL 77 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 77 (279)
+|.|.+-........-....+++....++++|++. |.+.||+|- .|-.+.|||+.+.-...
T Consensus 79 tG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneL---Dtn~LAagldkhrnds~~~Iwdi~s~ltvP------------ 143 (783)
T KOG1008|consen 79 TGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNEL---DTNHLAAGLDKHRNDSSLKIWDINSLLTVP------------ 143 (783)
T ss_pred cCceEEeecCCcccccceecccccccccccccccc---cHHHHHhhhhhhcccCCccceecccccCCC------------
Confidence 45555554433222222344567788999999995 788888874 45679999999852110
Q ss_pred eeccccccccC-CccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643 78 LGIEPDGFLHG-HDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL 156 (279)
Q Consensus 78 ~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (279)
.....|.+ -.....+++|..+.+ ++.+|.....+.++|++...........+
T Consensus 144 ---ke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~svnTk---------------------- 196 (783)
T KOG1008|consen 144 ---KESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSVNTK---------------------- 196 (783)
T ss_pred ---ccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhhhhh----------------------
Confidence 00011111 233455889987776 88899888899999987421111111111
Q ss_pred CCCCCceeEEEcC-CCCeEEEecCCCeEEEEec-CCC-cEEEEeecCC----cceEEEEEcCC-CcEEEEec-CCCeEEE
Q 023643 157 SPVPENNAIAVDP-QGGAIFSAAGDSCAYCWDV-ESS-RIKMVFKGHS----DYLHCIVARNS-TNQIVTGS-EDGTARI 227 (279)
Q Consensus 157 ~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~-~~~-~~~~~~~~~~----~~i~~i~~~~~-~~~l~~~~-~d~~i~v 227 (279)
.+..+.++| .++++++ ..||.|-+||. ++- .++..+.... ..+..++|.|. ...+++.+ ..++|++
T Consensus 197 ----~vqG~tVdp~~~nY~cs-~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrl 271 (783)
T KOG1008|consen 197 ----YVQGITVDPFSPNYFCS-NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRL 271 (783)
T ss_pred ----hcccceecCCCCCceec-cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEE
Confidence 145667777 5566665 44999999993 332 2333332222 34899999995 33444444 5678999
Q ss_pred EeCCC
Q 023643 228 WDCKS 232 (279)
Q Consensus 228 wd~~~ 232 (279)
||+..
T Consensus 272 ydi~~ 276 (783)
T KOG1008|consen 272 YDICV 276 (783)
T ss_pred ecccc
Confidence 99864
No 321
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=2.4e-06 Score=71.55 Aligned_cols=71 Identities=14% Similarity=0.292 Sum_probs=60.6
Q ss_pred eEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEE
Q 023643 28 VFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALL 107 (279)
Q Consensus 28 v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 107 (279)
+++++|+| ..-.|+.|-.-|.+.+|..++ .+.......|..++..+.|+++|. .+
T Consensus 62 atSLCWHp----e~~vLa~gwe~g~~~v~~~~~-------------------~e~htv~~th~a~i~~l~wS~~G~--~l 116 (1416)
T KOG3617|consen 62 ATSLCWHP----EEFVLAQGWEMGVSDVQKTNT-------------------TETHTVVETHPAPIQGLDWSHDGT--VL 116 (1416)
T ss_pred hhhhccCh----HHHHHhhccccceeEEEecCC-------------------ceeeeeccCCCCCceeEEecCCCC--eE
Confidence 56799999 778889999999999999987 233334456999999999999998 99
Q ss_pred EEeeCCCcEEEeecCC
Q 023643 108 LSCGDDGRICGWRWKE 123 (279)
Q Consensus 108 ~s~~~dg~i~iw~~~~ 123 (279)
+|+..=|.+.+|....
T Consensus 117 ~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 117 MTLDNPGSVHLWRYDV 132 (1416)
T ss_pred EEcCCCceeEEEEeee
Confidence 9999999999999863
No 322
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.51 E-value=4.3e-05 Score=60.93 Aligned_cols=220 Identities=13% Similarity=0.125 Sum_probs=113.9
Q ss_pred ceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccc------ccc-------cCCcccceeee------------cc
Q 023643 27 TVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKL------PLG-------LSNSKVQQLLG------------IE 81 (279)
Q Consensus 27 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~------~~~-------~~~~~~~~~~~------------~~ 81 (279)
.|+.+.|++ +..-|++|...|.|.||.......-. ... ..+. ...+.. ..
T Consensus 3 ~v~~vs~a~----~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~di~~r~~~~~~~gf~ 77 (395)
T PF08596_consen 3 SVTHVSFAP----ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNS-PGKLTDISDRAPPSLKEGFL 77 (395)
T ss_dssp -EEEEEEET----TTTEEEEEETTS-EEEEEEEE------------------S--GGGS-S-SEEE-GGG--TT-SEEEE
T ss_pred eEEEEEecC----CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCC-CcceEEehhhCCcccccccC
Confidence 588999999 77889999999999999876532211 000 0000 111111 23
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
+...+....++|++++.+.-| +++.|+.+|.+.|.|+|.. .......+..+.. .......
T Consensus 78 P~~l~~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGP-avI~~~~i~~~~~----------------~~~~~~~ 137 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGP-AVIYNENIRESFL----------------SKSSSSY 137 (395)
T ss_dssp EEEEE---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTT-EEEEEEEGGG--T-----------------SS----
T ss_pred chhheeccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCC-eEEeecccccccc----------------ccccccC
Confidence 344455568999999998666 8999999999999998632 1111111111000 0000112
Q ss_pred ceeEEEcC-----CC---CeEEEecCCCeEEEEecC-C--Cc----EEEEeecCCcceEEEE-EcCC-C-----------
Q 023643 162 NNAIAVDP-----QG---GAIFSAAGDSCAYCWDVE-S--SR----IKMVFKGHSDYLHCIV-ARNS-T----------- 213 (279)
Q Consensus 162 i~~~~~~~-----~~---~~l~~~~~d~~i~i~d~~-~--~~----~~~~~~~~~~~i~~i~-~~~~-~----------- 213 (279)
++++.|.. |+ -.+++|++.|.+.+|.+. . +. .......+.++|..|. ++.+ |
T Consensus 138 vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~ 217 (395)
T PF08596_consen 138 VTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQ 217 (395)
T ss_dssp EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHH
T ss_pred eeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhh
Confidence 56666652 33 378899999999999875 1 21 1122223556666654 3211 1
Q ss_pred --------cEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEc-----CCCCEEEEEcCcceEEeCC
Q 023643 214 --------NQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLD-----ASESWLVRVRATNYVILFS 279 (279)
Q Consensus 214 --------~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~d~~i~~wd 279 (279)
+-++....+..++++.+.+.+...+.. ........+++- ..+..|++-..+|.+++|+
T Consensus 218 ~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~--------~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~S 288 (395)
T PF08596_consen 218 GLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF--------DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYS 288 (395)
T ss_dssp GGGGT----EEEEEE-SSEEEEE-TT---EEEEE---------SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEE
T ss_pred ccccCCCcCcEEEEEcccceEEEeCCCCcccceee--------ccccccceEEEEeecccCCceEEEEEECCCcEEEEE
Confidence 123333457789999998888776652 222233334442 3566788888999998874
No 323
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=2e-05 Score=65.61 Aligned_cols=143 Identities=14% Similarity=0.101 Sum_probs=93.9
Q ss_pred CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCC---CCceEEEEeeCCCcE
Q 023643 40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGG---NEDALLLSCGDDGRI 116 (279)
Q Consensus 40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~~l~s~~~dg~i 116 (279)
+|.++++++.||+|.|-.+.+. +....+. -..++.+++++|+ .....+++||..| +
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~-------------------~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-l 140 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTD-------------------DEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-L 140 (846)
T ss_pred CCceEEEecCCCcEEEeeccCC-------------------ccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-E
Confidence 6999999999999999998873 3333332 3467999999997 1113799999999 7
Q ss_pred EEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEE
Q 023643 117 CGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMV 196 (279)
Q Consensus 117 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 196 (279)
.++.-+-....... .. ....+.|.++.|. |+++|-+..+| |++||+.+.+.+..
T Consensus 141 vL~er~wlgnk~~v-~l----------------------~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~ 194 (846)
T KOG2066|consen 141 VLSERNWLGNKDSV-VL----------------------SEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTN 194 (846)
T ss_pred EEehhhhhcCccce-ee----------------------ecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeec
Confidence 77653211111111 00 1112348999996 56888887666 89999998888777
Q ss_pred eecCCcc------eEEEEEcCCCcEEEEecCCCeEEEEeCC
Q 023643 197 FKGHSDY------LHCIVARNSTNQIVTGSEDGTARIWDCK 231 (279)
Q Consensus 197 ~~~~~~~------i~~i~~~~~~~~l~~~~~d~~i~vwd~~ 231 (279)
++..... ...+.|.++ ..|+.| ..-+|+|..++
T Consensus 195 i~~p~~~~R~e~fpphl~W~~~-~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 195 IPPPSQSVRPELFPPHLHWQDE-DRLVIG-WGDSVKICSIK 233 (846)
T ss_pred cCCCCCCCCcccCCCceEecCC-CeEEEe-cCCeEEEEEEe
Confidence 6543333 235667654 445555 44568888777
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.43 E-value=8.3e-05 Score=64.94 Aligned_cols=196 Identities=11% Similarity=0.188 Sum_probs=110.1
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCC-CcccccccCCcccceeee-
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSC-ISKLPLGLSNSKVQQLLG- 79 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~- 79 (279)
+|.|.+=|+.+....+ ...-...|.+++|+| |++.++..+..+++.+-.-.-. ..+..+........+...
T Consensus 89 ~G~iilvd~et~~~ei---vg~vd~GI~aaswS~----Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~V 161 (1265)
T KOG1920|consen 89 LGDIILVDPETLELEI---VGNVDNGISAASWSP----DEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNV 161 (1265)
T ss_pred CCcEEEEcccccceee---eeeccCceEEEeecC----CCcEEEEEeCCcEEEEEeccccchhcccccccccccccccee
Confidence 4666666665543322 223357899999999 9999999988888766543110 000011000000000000
Q ss_pred --ccccccccCCc---------------------cCeEEEEecCCCCceEEEEee----CC-CcEEEeecCCCccCccee
Q 023643 80 --IEPDGFLHGHD---------------------GPAYDVKFYGGNEDALLLSCG----DD-GRICGWRWKEFTESKVPI 131 (279)
Q Consensus 80 --~~~~~~~~~h~---------------------~~v~~~~~~~~~~~~~l~s~~----~d-g~i~iw~~~~~~~~~~~~ 131 (279)
++....+++.. +.=++|+|--+|+ ++++.. .+ ..|++||-+ +.-.....
T Consensus 162 GwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~--~fAVs~~~~~~~~RkirV~drE-g~Lns~se 238 (1265)
T KOG1920|consen 162 GWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGE--YFAVSFVESETGTRKIRVYDRE-GALNSTSE 238 (1265)
T ss_pred cccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCc--EEEEEEEeccCCceeEEEeccc-chhhcccC
Confidence 11111121111 1124589999998 888732 23 789999954 10000000
Q ss_pred eeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe---cCCCeEEEEecCCCcEEEE----eecCCcce
Q 023643 132 NLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA---AGDSCAYCWDVESSRIKMV----FKGHSDYL 204 (279)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~d~~i~i~d~~~~~~~~~----~~~~~~~i 204 (279)
...+ .-.+++|-|.|..+++- ++|+.|.++.- +|..-.. +......+
T Consensus 239 ~~~~-------------------------l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~v 292 (1265)
T KOG1920|consen 239 PVEG-------------------------LQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEV 292 (1265)
T ss_pred cccc-------------------------cccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccch
Confidence 0000 12589999999988875 34667889874 3433322 23334458
Q ss_pred EEEEEcCCCcEEEE---ecCCCeEEEEeCCCC
Q 023643 205 HCIVARNSTNQIVT---GSEDGTARIWDCKSG 233 (279)
Q Consensus 205 ~~i~~~~~~~~l~~---~~~d~~i~vwd~~~~ 233 (279)
..++|+.++..|+. ......|++|-+.+-
T Consensus 293 e~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 293 EELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred heeeecCCCCceeeeecccccceEEEEEecCe
Confidence 99999999998887 444555999987664
No 325
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.43 E-value=8.7e-06 Score=66.72 Aligned_cols=151 Identities=12% Similarity=0.060 Sum_probs=97.3
Q ss_pred cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643 24 LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE 103 (279)
Q Consensus 24 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 103 (279)
+...|.--+++. .+++++.|++-|.+.+|+-..+. -......+-.+.+..++.+++..
T Consensus 32 ~~~~v~lTc~ds----t~~~l~~GsS~G~lyl~~R~~~~------------------~~~~~~~~~~~~~~~~~vs~~e~ 89 (726)
T KOG3621|consen 32 FPARVKLTCVDA----TEEYLAMGSSAGSVYLYNRHTGE------------------MRKLKNEGATGITCVRSVSSVEY 89 (726)
T ss_pred CcceEEEEEeec----CCceEEEecccceEEEEecCchh------------------hhcccccCccceEEEEEecchhH
Confidence 344555556666 78999999999999999988642 11122223445566677888876
Q ss_pred ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeE
Q 023643 104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCA 183 (279)
Q Consensus 104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 183 (279)
++|.|+..|.|.++.++.............+. .+...|++++|++++..+++|...|.|
T Consensus 90 --lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~-------------------~~~~rVTal~Ws~~~~k~ysGD~~Gkv 148 (726)
T KOG3621|consen 90 --LVAAGTASGRVSVFQLNKELPRDLDYVTPCDK-------------------SHKCRVTALEWSKNGMKLYSGDSQGKV 148 (726)
T ss_pred --hhhhhcCCceEEeehhhccCCCcceeeccccc-------------------cCCceEEEEEecccccEEeecCCCceE
Confidence 88889999999999886532222211111111 012248999999999999999999999
Q ss_pred EEEecCCC----cEEEEeecCCcceEEEEEcCCCcEEEE
Q 023643 184 YCWDVESS----RIKMVFKGHSDYLHCIVARNSTNQIVT 218 (279)
Q Consensus 184 ~i~d~~~~----~~~~~~~~~~~~i~~i~~~~~~~~l~~ 218 (279)
..-.+.+. -..+.+..-.+.|-.+.+. ++..|++
T Consensus 149 ~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVS 186 (726)
T KOG3621|consen 149 VLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVS 186 (726)
T ss_pred EEEEechhhhhccccceeeccCcceEEeecc-cceehHh
Confidence 99888762 1112222334566666654 3333443
No 326
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=2.9e-06 Score=68.56 Aligned_cols=92 Identities=15% Similarity=0.105 Sum_probs=78.1
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceE-EEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLH-CIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~-~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
+.-+.|+|.-.++|.+..+|.|.++.+. .+.+.++..|...++ +++|.|||+.|+.|-.||+|++.|..++..+....
T Consensus 23 i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~ 101 (665)
T KOG4640|consen 23 IKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFL 101 (665)
T ss_pred eEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccc
Confidence 6788999999999999999999999988 778888887777777 99999999999999999999999999998887742
Q ss_pred CCccccccCcceeeeEEEEcC
Q 023643 241 PVKDKQLKGVISCVSCITLDA 261 (279)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~ 261 (279)
......|+++-|+|
T Consensus 102 -------~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 102 -------FSVETDISKGIWDR 115 (665)
T ss_pred -------cccccchheeeccc
Confidence 23345677777763
No 327
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.37 E-value=0.00075 Score=54.56 Aligned_cols=193 Identities=13% Similarity=0.123 Sum_probs=98.7
Q ss_pred ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccc
Q 023643 4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPD 83 (279)
Q Consensus 4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (279)
.|+||+..+. .+.......+.+.++.|+. + ..|++...||.+++||+.... .+.. +..+
T Consensus 62 ~I~iys~sG~---ll~~i~w~~~~iv~~~wt~----~-e~LvvV~~dG~v~vy~~~G~~---~fsl----------~~~i 120 (410)
T PF04841_consen 62 SIQIYSSSGK---LLSSIPWDSGRIVGMGWTD----D-EELVVVQSDGTVRVYDLFGEF---QFSL----------GEEI 120 (410)
T ss_pred EEEEECCCCC---EeEEEEECCCCEEEEEECC----C-CeEEEEEcCCEEEEEeCCCce---eech----------hhhc
Confidence 4888998874 3444444448999999988 4 455566799999999987422 1110 1111
Q ss_pred ccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCce
Q 023643 84 GFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENN 163 (279)
Q Consensus 84 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 163 (279)
....-....+....+..+|- .+++. ++.+.+-+ ............. ... .+..........
T Consensus 121 ~~~~v~e~~i~~~~~~~~Gi--vvLt~--~~~~~~v~--n~~~~~~~~~~~~-~p~------------~~~~~~~~~~~~ 181 (410)
T PF04841_consen 121 EEEKVLECRIFAIWFYKNGI--VVLTG--NNRFYVVN--NIDEPVKLRRLPE-IPG------------LWTKFHWWPSWT 181 (410)
T ss_pred cccCcccccccccccCCCCE--EEECC--CCeEEEEe--Cccccchhhcccc-CCC------------cccccccccccc
Confidence 11111222233333443442 33332 33343322 2211100000000 000 000000000001
Q ss_pred e-EEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 164 A-IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 164 ~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
. ..++.+....+....++.+.+.+....+. +. ..+++..|+.||+++++|.-..+|.+.+....-.+....+.
T Consensus 182 ~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 182 VIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred cceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 1 23444455555555556666554332211 22 34689999999999999999999999998866666665554
No 328
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.32 E-value=8.4e-06 Score=68.44 Aligned_cols=109 Identities=10% Similarity=0.103 Sum_probs=84.9
Q ss_pred EEEEecCCCCceEEEEeeC----CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC
Q 023643 94 YDVKFYGGNEDALLLSCGD----DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP 169 (279)
Q Consensus 94 ~~~~~~~~~~~~~l~s~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 169 (279)
+-.+|+|..+ +|+.++. .|+|.||-- ++. ++.+...|+ .+++++|+|
T Consensus 19 ti~SWHPseP--lfAVA~fS~er~GSVtIfad-tGE-------Pqr~Vt~P~-------------------hatSLCWHp 69 (1416)
T KOG3617|consen 19 TISSWHPSEP--LFAVASFSPERGGSVTIFAD-TGE-------PQRDVTYPV-------------------HATSLCWHP 69 (1416)
T ss_pred cccccCCCCc--eeEEEEecCCCCceEEEEec-CCC-------CCcccccce-------------------ehhhhccCh
Confidence 4467999988 8887764 477777742 111 111222222 267899999
Q ss_pred CCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC
Q 023643 170 QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK 231 (279)
Q Consensus 170 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~ 231 (279)
..-.|+.|=.-|.+.+|...+.+.-.....|..+|..+.||++|..++++..-|.+.+|.+.
T Consensus 70 e~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 70 EEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred HHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 88888988888999999988877777777899999999999999999999999999999876
No 329
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.29 E-value=0.00026 Score=52.89 Aligned_cols=186 Identities=13% Similarity=0.099 Sum_probs=97.3
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
+|.+..||.++++. +..... .+++..... . .+..+++++.++.|..+|..+++.
T Consensus 45 ~~~l~~~d~~tG~~--~W~~~~-~~~~~~~~~-~----~~~~v~v~~~~~~l~~~d~~tG~~------------------ 98 (238)
T PF13360_consen 45 DGNLYALDAKTGKV--LWRFDL-PGPISGAPV-V----DGGRVYVGTSDGSLYALDAKTGKV------------------ 98 (238)
T ss_dssp TSEEEEEETTTSEE--EEEEEC-SSCGGSGEE-E----ETTEEEEEETTSEEEEEETTTSCE------------------
T ss_pred CCEEEEEECCCCCE--EEEeec-cccccceee-e----cccccccccceeeeEecccCCcce------------------
Confidence 56777888766543 222221 111111111 1 456667777888999999888532
Q ss_pred ccccc-cCCc---cCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCc---ccceEEeecCCCCCccc
Q 023643 82 PDGFL-HGHD---GPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNH---VKPVLDLVNHQHKGPWG 154 (279)
Q Consensus 82 ~~~~~-~~h~---~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 154 (279)
+-.. .... ...........+. .++.+..++.|..+|++++.. ........ ...+..+
T Consensus 99 -~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~l~~~d~~tG~~---~w~~~~~~~~~~~~~~~~---------- 162 (238)
T PF13360_consen 99 -LWSIYLTSSPPAGVRSSSSPAVDGD--RLYVGTSSGKLVALDPKTGKL---LWKYPVGEPRGSSPISSF---------- 162 (238)
T ss_dssp -EEEEEE-SSCTCSTB--SEEEEETT--EEEEEETCSEEEEEETTTTEE---EEEEESSTT-SS--EEEE----------
T ss_pred -eeeeccccccccccccccCceEecC--EEEEEeccCcEEEEecCCCcE---EEEeecCCCCCCcceeee----------
Confidence 2221 1110 0111111121244 788888899999999875422 11111110 0000000
Q ss_pred cCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCc
Q 023643 155 ALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGK 234 (279)
Q Consensus 155 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~ 234 (279)
..+..-....++ .++.++.++.+..+|+.+++.+.... ...+..+ ..+.+..|+.++.++.|..||+++|+
T Consensus 163 -----~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 163 -----SDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp -----TTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTE
T ss_pred -----cccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 001111222234 77777777754434999998665333 2222221 33567777777799999999999998
Q ss_pred eEEE
Q 023643 235 CIKV 238 (279)
Q Consensus 235 ~~~~ 238 (279)
.+.+
T Consensus 234 ~~W~ 237 (238)
T PF13360_consen 234 VVWQ 237 (238)
T ss_dssp EEEE
T ss_pred EEeE
Confidence 7653
No 330
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.25 E-value=0.00019 Score=58.16 Aligned_cols=146 Identities=12% Similarity=0.093 Sum_probs=82.2
Q ss_pred eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEec
Q 023643 20 EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFY 99 (279)
Q Consensus 20 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 99 (279)
.+.........+.++| +++.+++ +.||.-.|+..... +. ...+......|.
T Consensus 27 ~lg~~~~~p~~ls~np----ngr~v~V-~g~geY~iyt~~~~-------------------r~-----k~~G~g~~~vw~ 77 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNP----NGRFVLV-CGDGEYEIYTALAW-------------------RN-----KAFGSGLSFVWS 77 (443)
T ss_dssp EEEE-SS--SEEEE-T----TSSEEEE-EETTEEEEEETTTT-------------------EE-----EEEEE-SEEEE-
T ss_pred cCCCCCcCCeeEEECC----CCCEEEE-EcCCEEEEEEccCC-------------------cc-----cccCceeEEEEe
Confidence 3444445678999999 8998888 56778888874331 11 123445678899
Q ss_pred CCCCceEEEEeeCCCcEEEee-cCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec
Q 023643 100 GGNEDALLLSCGDDGRICGWR-WKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA 178 (279)
Q Consensus 100 ~~~~~~~l~s~~~dg~i~iw~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 178 (279)
+.+ .+|+-...+.|.|+. ++.. .. ....+.. . +..+- + |.+|...+
T Consensus 78 ~~n---~yAv~~~~~~I~I~kn~~~~-~~-k~i~~~~-~------------------------~~~If--~-G~LL~~~~ 124 (443)
T PF04053_consen 78 SRN---RYAVLESSSTIKIYKNFKNE-VV-KSIKLPF-S------------------------VEKIF--G-GNLLGVKS 124 (443)
T ss_dssp TSS---EEEEE-TTS-EEEEETTEE--TT------SS--------------------------EEEEE----SSSEEEEE
T ss_pred cCc---cEEEEECCCeEEEEEcCccc-cc-eEEcCCc-c------------------------cceEE--c-CcEEEEEC
Confidence 854 577777789999963 3211 00 0111110 0 12221 1 77777666
Q ss_pred CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC
Q 023643 179 GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK 231 (279)
Q Consensus 179 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~ 231 (279)
. +.|.+||..+++.++.+... +|..+.|++++.+++..+.+ .+.|++..
T Consensus 125 ~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 125 S-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYN 173 (443)
T ss_dssp T-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred C-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence 4 48999999999999998733 48999999999999988755 57776643
No 331
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.25 E-value=5.7e-06 Score=41.82 Aligned_cols=39 Identities=23% Similarity=0.543 Sum_probs=34.6
Q ss_pred CcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEe
Q 023643 191 SRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWD 229 (279)
Q Consensus 191 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd 229 (279)
+++...+..|...|.++.|++.+.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677778899999999999999999999999999996
No 332
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.25 E-value=0.00022 Score=57.50 Aligned_cols=166 Identities=17% Similarity=0.153 Sum_probs=95.6
Q ss_pred cccceEEEEECCCCCCCCCEEEEec---CC-CcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEec
Q 023643 24 LTRTVFRTVWGPSKDGSPDTIVIAS---SD-GSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFY 99 (279)
Q Consensus 24 ~~~~v~~~~~~~~~~~~~~~l~~~~---~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 99 (279)
....+..-+|+| ++..++-.. .. ..+.+++++++. ...+..+.++. ..-+|+
T Consensus 191 ~~~~~~~p~ws~----~~~~~~y~~f~~~~~~~i~~~~l~~g~-----------------~~~i~~~~g~~---~~P~fs 246 (425)
T COG0823 191 SGSLILTPAWSP----DGKKLAYVSFELGGCPRIYYLDLNTGK-----------------RPVILNFNGNN---GAPAFS 246 (425)
T ss_pred cCcceeccccCc----CCCceEEEEEecCCCceEEEEeccCCc-----------------cceeeccCCcc---CCccCC
Confidence 345677788998 777665542 22 358889998753 22223344443 356799
Q ss_pred CCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC
Q 023643 100 GGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG 179 (279)
Q Consensus 100 ~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 179 (279)
|+++ .++++...||...||-++..... ...+..... .-..=.|+|+|+.++-.+.
T Consensus 247 pDG~-~l~f~~~rdg~~~iy~~dl~~~~--~~~Lt~~~g----------------------i~~~Ps~spdG~~ivf~Sd 301 (425)
T COG0823 247 PDGS-KLAFSSSRDGSPDIYLMDLDGKN--LPRLTNGFG----------------------INTSPSWSPDGSKIVFTSD 301 (425)
T ss_pred CCCC-EEEEEECCCCCccEEEEcCCCCc--ceecccCCc----------------------cccCccCCCCCCEEEEEeC
Confidence 9998 56667777887666654322111 111110000 0123478999997766543
Q ss_pred -CC--eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC-Ce--EEEEeCCCCceEEEe
Q 023643 180 -DS--CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED-GT--ARIWDCKSGKCIKVI 239 (279)
Q Consensus 180 -d~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-~~--i~vwd~~~~~~~~~~ 239 (279)
.| .|.++|.+.+...+ +......-..-.++|+|++|+..+.. |. |.+.|+.++...+.+
T Consensus 302 r~G~p~I~~~~~~g~~~~r-iT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l 366 (425)
T COG0823 302 RGGRPQIYLYDLEGSQVTR-LTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL 366 (425)
T ss_pred CCCCcceEEECCCCCceeE-eeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc
Confidence 34 47777777655433 32222222266789999998877643 44 777777666544443
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.24 E-value=0.00033 Score=58.17 Aligned_cols=105 Identities=14% Similarity=0.089 Sum_probs=70.2
Q ss_pred ceeEEEcCCCCeEEEecC-CCeEEEEecCCCcE------------EEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEE
Q 023643 162 NNAIAVDPQGGAIFSAAG-DSCAYCWDVESSRI------------KMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIW 228 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~------------~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vw 228 (279)
...+.++|||+++++++. +.++.++|+.+.+. +.+.+-- ......+|.++|+.+.+-..|..|..|
T Consensus 323 PHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG-lGPLHTaFDg~G~aytslf~dsqv~kw 401 (635)
T PRK02888 323 PHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG-LGPLHTAFDGRGNAYTTLFLDSQIVKW 401 (635)
T ss_pred ccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC-CCcceEEECCCCCEEEeEeecceeEEE
Confidence 468899999998877654 88999999987542 3333322 234567899999988889999999999
Q ss_pred eCCC----------CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643 229 DCKS----------GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR 270 (279)
Q Consensus 229 d~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 270 (279)
++.. ...+.++..+-+ .+|.....+=.-.|+|++|++..
T Consensus 402 n~~~a~~~~~g~~~~~v~~k~dV~y~---pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 402 NIEAAIRAYKGEKVDPIVQKLDVHYQ---PGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred ehHHHHHHhccccCCcceecccCCCc---cceeeecCCCcCCCCCCEEEEcc
Confidence 9876 234444433221 34433333333467777777653
No 334
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.19 E-value=2.1e-05 Score=64.58 Aligned_cols=109 Identities=11% Similarity=0.133 Sum_probs=81.6
Q ss_pred EEcCCCCeEEEecCCCeEEEEecCCCcEEE-EeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE-ecCCc
Q 023643 166 AVDPQGGAIFSAAGDSCAYCWDVESSRIKM-VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV-IDPVK 243 (279)
Q Consensus 166 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~-~~~~~ 243 (279)
+++..+++++.|+.-|.+++|+-..++... ...+..+.+..+..+++..++|.|+..|.|.++-+..+.+... +-.+.
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~ 119 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPC 119 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccc
Confidence 455678899999999999999976554332 2333455666778888899999999999999998876432211 11111
Q ss_pred cccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643 244 DKQLKGVISCVSCITLDASESWLVRVRATNYVIL 277 (279)
Q Consensus 244 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 277 (279)
+ ..|...|++++|++++..+++|...|+|..
T Consensus 120 d---~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~ 150 (726)
T KOG3621|consen 120 D---KSHKCRVTALEWSKNGMKLYSGDSQGKVVL 150 (726)
T ss_pred c---ccCCceEEEEEecccccEEeecCCCceEEE
Confidence 1 357889999999999999999999998764
No 335
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.19 E-value=0.0011 Score=53.61 Aligned_cols=95 Identities=14% Similarity=0.142 Sum_probs=59.4
Q ss_pred CCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCc
Q 023643 171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGV 250 (279)
Q Consensus 171 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 250 (279)
+..+++++.++.+..+|..+++.+...... ....+.. .+..++.++.+|.+..+|..+|+.+...... ..
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~------~~ 325 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDL------LH 325 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEccccc------CC
Confidence 456777788999999999999887665421 1112222 4667777889999999999999876554211 00
Q ss_pred ceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 251 ISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 251 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
....+... .+.+|+.++.+|.+...
T Consensus 326 -~~~~sp~v--~~g~l~v~~~~G~l~~l 350 (394)
T PRK11138 326 -RLLTAPVL--YNGYLVVGDSEGYLHWI 350 (394)
T ss_pred -CcccCCEE--ECCEEEEEeCCCEEEEE
Confidence 01111111 14456666777776654
No 336
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.18 E-value=0.00043 Score=43.83 Aligned_cols=101 Identities=13% Similarity=0.162 Sum_probs=67.6
Q ss_pred ceeEEEc---CCC-CeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEE
Q 023643 162 NNAIAVD---PQG-GAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIK 237 (279)
Q Consensus 162 i~~~~~~---~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~ 237 (279)
|+++++. .+| +.|++|+.|..|++|+- .+.+.++.. .+.|.+++-... ..++.+..+|+|-+|+- .+.+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 3455544 333 48999999999999984 467777763 456777776654 67888999999999985 34444
Q ss_pred EecCCccccccCcceeeeEEE-EcCCC---CEEEEEcCcceEEe
Q 023643 238 VIDPVKDKQLKGVISCVSCIT-LDASE---SWLVRVRATNYVIL 277 (279)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~-~~~~~---~~l~~~~~d~~i~~ 277 (279)
.++ .. ..+.+++ ++.++ +-|++|-.+|.|-+
T Consensus 76 RiK--------SK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 76 RIK--------SK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eec--------cC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 442 11 2244554 44433 46899988888753
No 337
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.18 E-value=0.00091 Score=54.09 Aligned_cols=98 Identities=14% Similarity=0.136 Sum_probs=64.6
Q ss_pred CCCeEEEecCCCeEEEEecCCCcEEEEeecCCcc-eEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCcccccc
Q 023643 170 QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDY-LHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLK 248 (279)
Q Consensus 170 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 248 (279)
.+..++.++.++.+..+|..+++.+.....-... ...... .+.+|+.++.+|.|.+.|..+|+.+...+..
T Consensus 293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~------ 364 (394)
T PRK11138 293 DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVD------ 364 (394)
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC------
Confidence 3567888888999999999999877654321111 111111 2567888899999999999999988876421
Q ss_pred CcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 249 GVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 249 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
.........+ .+..|+.++.||.+..+
T Consensus 365 -~~~~~s~P~~--~~~~l~v~t~~G~l~~~ 391 (394)
T PRK11138 365 -SSGFLSEPVV--ADDKLLIQARDGTVYAI 391 (394)
T ss_pred -CCcceeCCEE--ECCEEEEEeCCceEEEE
Confidence 1111111222 24578888999988765
No 338
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.16 E-value=0.00033 Score=56.78 Aligned_cols=136 Identities=14% Similarity=0.088 Sum_probs=74.9
Q ss_pred CccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEc
Q 023643 89 HDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVD 168 (279)
Q Consensus 89 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 168 (279)
..-....+.++|++. +++. ..||...|+..... .... .+ .-....|.
T Consensus 31 ~~~~p~~ls~npngr--~v~V-~g~geY~iyt~~~~---r~k~--~G-------------------------~g~~~vw~ 77 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGR--FVLV-CGDGEYEIYTALAW---RNKA--FG-------------------------SGLSFVWS 77 (443)
T ss_dssp -SS--SEEEE-TTSS--EEEE-EETTEEEEEETTTT---EEEE--EE-------------------------E-SEEEE-
T ss_pred CCcCCeeEEECCCCC--EEEE-EcCCEEEEEEccCC---cccc--cC-------------------------ceeEEEEe
Confidence 444578899999997 6666 55788888873211 1111 11 12577899
Q ss_pred CCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCcccccc
Q 023643 169 PQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLK 248 (279)
Q Consensus 169 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 248 (279)
+ .+.+++-.....|.++.--+.+....++.. ..+..|-. |..|+..+.+ .|.+||..+++.+..+..
T Consensus 78 ~-~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v------- 144 (443)
T PF04053_consen 78 S-RNRYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV------- 144 (443)
T ss_dssp T-SSEEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-------
T ss_pred c-CccEEEEECCCeEEEEEcCccccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec-------
Confidence 8 445777777888999732222222233321 12333322 7777766544 899999999999999842
Q ss_pred CcceeeeEEEEcCCCCEEEEEcCcc
Q 023643 249 GVISCVSCITLDASESWLVRVRATN 273 (279)
Q Consensus 249 ~~~~~v~~~~~~~~~~~l~~~~~d~ 273 (279)
.+|..+.|++++.+++..+.+.
T Consensus 145 ---~~vk~V~Ws~~g~~val~t~~~ 166 (443)
T PF04053_consen 145 ---SAVKYVIWSDDGELVALVTKDS 166 (443)
T ss_dssp ----E-EEEEE-TTSSEEEEE-S-S
T ss_pred ---CCCcEEEEECCCCEEEEEeCCe
Confidence 1488999999999999887765
No 339
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=6.4e-06 Score=63.07 Aligned_cols=88 Identities=8% Similarity=0.098 Sum_probs=73.0
Q ss_pred EEEEecCCCcEEEEeecCCcceEEEEEcCCCc-EEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcC
Q 023643 183 AYCWDVESSRIKMVFKGHSDYLHCIVARNSTN-QIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDA 261 (279)
Q Consensus 183 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 261 (279)
+++.+..+.+...-+..+...|+.++|+|..+ ++..++.+..|+|.|+++...+..+ ..+ ..+++++|+.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy--------~a~-~~~wSC~wDl 245 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY--------IAY-NQIWSCCWDL 245 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe--------ecc-CCceeeeecc
Confidence 66676666666666667888999999999755 7889999999999999999888877 344 6899999998
Q ss_pred CC-CEEEEEcCcceEEeCC
Q 023643 262 SE-SWLVRVRATNYVILFS 279 (279)
Q Consensus 262 ~~-~~l~~~~~d~~i~~wd 279 (279)
|. ++|.+|-..|.|.+||
T Consensus 246 de~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 246 DERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred CCcceeEEeccCceEEEEE
Confidence 64 6788888999999987
No 340
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.13 E-value=0.00021 Score=57.05 Aligned_cols=224 Identities=13% Similarity=0.084 Sum_probs=106.4
Q ss_pred eecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccccc--cc-CCccCeEEEEe
Q 023643 22 EILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGF--LH-GHDGPAYDVKF 98 (279)
Q Consensus 22 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~h~~~v~~~~~ 98 (279)
....++|++++.|. =-++|+|..+|.+.|.|++...-.. ...+.. .. .....++++.|
T Consensus 83 ~~~~g~vtal~~S~-----iGFvaigy~~G~l~viD~RGPavI~--------------~~~i~~~~~~~~~~~~vt~ieF 143 (395)
T PF08596_consen 83 DAKQGPVTALKNSD-----IGFVAIGYESGSLVVIDLRGPAVIY--------------NENIRESFLSKSSSSYVTSIEF 143 (395)
T ss_dssp ---S-SEEEEEE-B-----TSEEEEEETTSEEEEEETTTTEEEE--------------EEEGGG--T-SS----EEEEEE
T ss_pred eccCCcEeEEecCC-----CcEEEEEecCCcEEEEECCCCeEEe--------------eccccccccccccccCeeEEEE
Confidence 34478999999975 5799999999999999997632111 111111 11 23456778888
Q ss_pred cC---CCCc---eEEEEeeCCCcEEEeecCCCccCcceeeecc---CcccceEE---eecCCCCCccccCCCCCCceeEE
Q 023643 99 YG---GNED---ALLLSCGDDGRICGWRWKEFTESKVPINLQG---NHVKPVLD---LVNHQHKGPWGALSPVPENNAIA 166 (279)
Q Consensus 99 ~~---~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~ 166 (279)
.. .+++ -.++.|...|.+.+|.+-..........+.+ ....++.. +............. .+..+.
T Consensus 144 ~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~---~~~~l~ 220 (395)
T PF08596_consen 144 SVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATIS---AMQGLS 220 (395)
T ss_dssp EEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHH---HHHGGG
T ss_pred EEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchh---Hhhccc
Confidence 62 2211 3788899999999998742111111111111 11111111 10000000000000 000000
Q ss_pred EcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEc-----CCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 167 VDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVAR-----NSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 167 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~-----~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
=...-+.+++...+..++++...+.+..+......-....+.+- ..+..|++-..+|.|++|.+..-+.+..+..
T Consensus 221 ~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l 300 (395)
T PF08596_consen 221 KGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL 300 (395)
T ss_dssp GT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred cCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence 00001224444557889999998887766554222222333442 2467788888999999999999988888764
Q ss_pred CccccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643 242 VKDKQLKGVISCVSCITLDASESWLVRVRA 271 (279)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 271 (279)
.. ......+....++++|..++-.+.
T Consensus 301 ~~----~~d~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 301 PP----PLDSRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp SS-------HHHHTT-EE-TTS-EEEE-SS
T ss_pred CC----ccccccccccEECCCCCEEEEeCc
Confidence 32 222334556678888987766544
No 341
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.09 E-value=1.6e-05 Score=40.03 Aligned_cols=32 Identities=16% Similarity=0.324 Sum_probs=29.4
Q ss_pred cCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 248 KGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 248 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
..|...|.++.|.+++..+++++.|+.+++|+
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 56777899999999999999999999999997
No 342
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.05 E-value=0.00083 Score=42.57 Aligned_cols=68 Identities=10% Similarity=0.056 Sum_probs=49.1
Q ss_pred eEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEE
Q 023643 28 VFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALL 107 (279)
Q Consensus 28 v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 107 (279)
|++|++..-.....+.|++|+.|..||+|+-.. .+..+. -.+.|.+++-...+ .|
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---------------------~~~Ei~-e~~~v~~L~~~~~~---~F 56 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---------------------IVAEIT-ETDKVTSLCSLGGG---RF 56 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---------------------EEEEEe-cccceEEEEEcCCC---EE
Confidence 677777663222336899999999999999764 223333 24567888777664 79
Q ss_pred EEeeCCCcEEEee
Q 023643 108 LSCGDDGRICGWR 120 (279)
Q Consensus 108 ~s~~~dg~i~iw~ 120 (279)
+-+-.+|+|-+|+
T Consensus 57 ~Y~l~NGTVGvY~ 69 (111)
T PF14783_consen 57 AYALANGTVGVYD 69 (111)
T ss_pred EEEecCCEEEEEe
Confidence 9999999999997
No 343
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.03 E-value=0.00094 Score=48.83 Aligned_cols=71 Identities=17% Similarity=0.069 Sum_probs=57.8
Q ss_pred CCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 170 QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 170 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
-|.+++.|+..|.+++.+..+|+....+.....-=......+++..+..|+.|++.+..|.++..++...+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 36679999999999999999998888876443322233456789999999999999999999998888763
No 344
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.00 E-value=0.0018 Score=53.95 Aligned_cols=98 Identities=9% Similarity=-0.013 Sum_probs=67.2
Q ss_pred CCCeEEEecCCCeEEEEecCC-----CcEEEEeecCCcceEEEEEcCCCcEEEEec-CCCeEEEEeCCCCce--------
Q 023643 170 QGGAIFSAAGDSCAYCWDVES-----SRIKMVFKGHSDYLHCIVARNSTNQIVTGS-EDGTARIWDCKSGKC-------- 235 (279)
Q Consensus 170 ~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~~~~~-------- 235 (279)
+|++... .++.|.+.|..+ .+.+..+. -......++++|||+++++++ .+.++.|.|+.+.+.
T Consensus 287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~ 363 (635)
T PRK02888 287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP 363 (635)
T ss_pred CCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc
Confidence 4554444 256799999887 34555444 334567899999999866554 599999999987553
Q ss_pred ----EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 236 ----IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 236 ----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
....+ - ...-...+|+++|....|-.-|..|..|+
T Consensus 364 ~~~vvaeve--------v-GlGPLHTaFDg~G~aytslf~dsqv~kwn 402 (635)
T PRK02888 364 RDAVVAEPE--------L-GLGPLHTAFDGRGNAYTTLFLDSQIVKWN 402 (635)
T ss_pred cceEEEeec--------c-CCCcceEEECCCCCEEEeEeecceeEEEe
Confidence 22221 1 11223568999998777888899998886
No 345
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.97 E-value=0.0033 Score=50.96 Aligned_cols=40 Identities=10% Similarity=0.034 Sum_probs=30.4
Q ss_pred ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecC
Q 023643 80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWK 122 (279)
Q Consensus 80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 122 (279)
++++..+.-..+.+.++.|..+. .|+....||.++++|+.
T Consensus 70 G~ll~~i~w~~~~iv~~~wt~~e---~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 70 GKLLSSIPWDSGRIVGMGWTDDE---ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred CCEeEEEEECCCCEEEEEECCCC---eEEEEEcCCEEEEEeCC
Confidence 44555554444889999999865 57788899999999975
No 346
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.95 E-value=0.00035 Score=60.02 Aligned_cols=148 Identities=12% Similarity=0.065 Sum_probs=91.7
Q ss_pred CCCEEEE-ecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccC-eEEEEecCCCC-----ceEEEEeeC
Q 023643 40 SPDTIVI-ASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGP-AYDVKFYGGNE-----DALLLSCGD 112 (279)
Q Consensus 40 ~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~-----~~~l~s~~~ 112 (279)
+.++|+. ......|+-.|++. ++.+..+..|... |. .+.|+.+ ...-+.|-.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~-------------------GKVV~eW~~~~~~~v~--~~~p~~K~aqlt~e~tflGls 550 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLER-------------------GKVVEEWKVHDDIPVV--DIAPDSKFAQLTNEQTFLGLS 550 (794)
T ss_pred ccceEeecCCCCCceEEEecCC-------------------CcEEEEeecCCCccee--EecccccccccCCCceEEEEC
Confidence 3344433 33456777777777 5666667665543 44 3444321 124556667
Q ss_pred CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCc
Q 023643 113 DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSR 192 (279)
Q Consensus 113 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 192 (279)
+..+..||+|-.. .+.. ....+. +......+|++-+.+| +||+|+.+|.||+||-...+
T Consensus 551 ~n~lfriDpR~~~-~k~v-~~~~k~------------------Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~ 609 (794)
T PF08553_consen 551 DNSLFRIDPRLSG-NKLV-DSQSKQ------------------YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKR 609 (794)
T ss_pred CCceEEeccCCCC-Ccee-eccccc------------------cccCCCceEEEecCCc-eEEEEeCCCcEEeecccchh
Confidence 8889999988432 1111 101100 0111124677766655 78999999999999954444
Q ss_pred EEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeC
Q 023643 193 IKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDC 230 (279)
Q Consensus 193 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~ 230 (279)
....+.+-..+|.+|..+.||++|++.+ +..|-+++.
T Consensus 610 AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 610 AKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred hhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 4455667788999999999999988776 555666664
No 347
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=7.9e-05 Score=60.61 Aligned_cols=74 Identities=15% Similarity=0.079 Sum_probs=62.3
Q ss_pred ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeE-EEEecCCCC
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAY-DVKFYGGNE 103 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~ 103 (279)
...|.-+.|+| .-.++|.+..+|.|-+..++- +.+-++.-|..+++ +++|.|+|+
T Consensus 20 ~~~i~~~ewnP----~~dLiA~~t~~gelli~R~n~--------------------qRlwtip~p~~~v~~sL~W~~DGk 75 (665)
T KOG4640|consen 20 PINIKRIEWNP----KMDLIATRTEKGELLIHRLNW--------------------QRLWTIPIPGENVTASLCWRPDGK 75 (665)
T ss_pred ccceEEEEEcC----ccchhheeccCCcEEEEEecc--------------------ceeEeccCCCCccceeeeecCCCC
Confidence 45788899999 899999999999998888873 44555665666677 999999998
Q ss_pred ceEEEEeeCCCcEEEeecCCC
Q 023643 104 DALLLSCGDDGRICGWRWKEF 124 (279)
Q Consensus 104 ~~~l~s~~~dg~i~iw~~~~~ 124 (279)
.|+.|-.||+|++.|.+.+
T Consensus 76 --llaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 76 --LLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred --EEEEEecCCeEEEEEccCC
Confidence 9999999999999998754
No 348
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.89 E-value=5.4e-05 Score=53.93 Aligned_cols=104 Identities=12% Similarity=0.166 Sum_probs=65.3
Q ss_pred EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEE
Q 023643 106 LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYC 185 (279)
Q Consensus 106 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 185 (279)
.++.|+.+|.|.+|+.+............... + ...+.-..++.+..+++.++.|+.
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~---i--------------------~~~Ip~~~~~~~~c~~~~dg~ir~ 128 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEES---I--------------------DLGIPNGRDSSLGCVGAQDGRIRA 128 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhccccc---c--------------------eeccccccccceeEEeccCCceee
Confidence 79999999999999976221110000000000 0 112222234558889999999999
Q ss_pred EecCCCcEEEEeecCC-cceEEEEEcCCCcEEEEe--cCCCeEEEEeCCC
Q 023643 186 WDVESSRIKMVFKGHS-DYLHCIVARNSTNQIVTG--SEDGTARIWDCKS 232 (279)
Q Consensus 186 ~d~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~--~~d~~i~vwd~~~ 232 (279)
|++.-.+.+...-.|. .++........++.++.+ |.|..++.|++..
T Consensus 129 ~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 129 CNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 9998777777666666 455555555566666666 6777777777654
No 349
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.00024 Score=56.88 Aligned_cols=146 Identities=12% Similarity=0.007 Sum_probs=92.3
Q ss_pred EEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEE-----EEeeCCCcEEE
Q 023643 44 IVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALL-----LSCGDDGRICG 118 (279)
Q Consensus 44 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-----~s~~~dg~i~i 118 (279)
|.++.....|+-.|++. ++.+..++-|.. |+-+.+.|+.+...| +.|=.|..|.-
T Consensus 349 l~~~~~~~~l~klDIE~-------------------GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfr 408 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIER-------------------GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFR 408 (644)
T ss_pred eeCCCCcCcceeeeccc-------------------ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEE
Confidence 34455556677777776 666677776665 777788887653333 23445788888
Q ss_pred eecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee
Q 023643 119 WRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK 198 (279)
Q Consensus 119 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 198 (279)
||++-. ....+...+++....-. .-.|.+-..+ .++++|+.+|.|++||-...+....+.
T Consensus 409 iDpRv~-~~~kl~~~q~kqy~~k~------------------nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlP 468 (644)
T KOG2395|consen 409 IDPRVQ-GKNKLAVVQSKQYSTKN------------------NFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALP 468 (644)
T ss_pred eccccc-Ccceeeeeecccccccc------------------ccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhccc
Confidence 998732 11111122221111100 1245554444 479999999999999974444555677
Q ss_pred cCCcceEEEEEcCCCcEEEEecCCCeEEEEeC
Q 023643 199 GHSDYLHCIVARNSTNQIVTGSEDGTARIWDC 230 (279)
Q Consensus 199 ~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~ 230 (279)
+-..+|..|..+.+|++|+..+ +..+-+-++
T Consensus 469 gLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 469 GLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred ccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 8889999999999999988665 555666554
No 350
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=2.2e-05 Score=66.39 Aligned_cols=153 Identities=12% Similarity=0.125 Sum_probs=103.1
Q ss_pred ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643 80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV 159 (279)
Q Consensus 80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (279)
.+..++++.|...-+|++|+...+ .|+.|+..|.|+++++.++.. ......| .
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~--hL~vG~~~Geik~~nv~sG~~---e~s~ncH----------------------~ 1143 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTN--HLAVGSHAGEIKIFNVSSGSM---EESVNCH----------------------Q 1143 (1516)
T ss_pred cccchhhhccccceeeEEeecCCc--eEEeeeccceEEEEEccCccc---ccccccc----------------------c
Confidence 566778888999999999999887 999999999999999865422 1222221 1
Q ss_pred CCceeEEEcCCCCeEEEecCCC--eEEEEecCC-CcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE
Q 023643 160 PENNAIAVDPQGGAIFSAAGDS--CAYCWDVES-SRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI 236 (279)
Q Consensus 160 ~~i~~~~~~~~~~~l~~~~~d~--~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~ 236 (279)
.+|+-+.-+.+|..+++.+.-. ..-+|++.+ +.++++|... .++.|+.....-+.|..-....+||+.++..+
T Consensus 1144 SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed----~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1144 SAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDED----KAVKFSNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred cccccccccCCcceeeeeccccCchHHHhccccccCcccccccc----ceeehhhhHHHHHhcccccceEEEecccCcHH
Confidence 2356666677888666654433 467899864 5566666532 46788776555555666667899999999887
Q ss_pred EEecCCccccccCcceeeeEEEEcCCCCEEE
Q 023643 237 KVIDPVKDKQLKGVISCVSCITLDASESWLV 267 (279)
Q Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 267 (279)
.++-... .+..-.-++..|+|+..+++
T Consensus 1220 ~tylt~~----~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1220 QTYLTDT----VTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HHhcCcc----hhhhhhccccccCCCcceEe
Confidence 7742211 12222236778999877664
No 351
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.82 E-value=0.0023 Score=50.18 Aligned_cols=175 Identities=11% Similarity=0.127 Sum_probs=96.0
Q ss_pred Cceeeeccccc-----cccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccccee
Q 023643 3 GDSTNWDEDAY-----RKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQL 77 (279)
Q Consensus 3 G~v~iw~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 77 (279)
|.|.++++... +...+... ...++|++++-.. +. |+++. .+.|.+|++.....
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~~-----~~-lv~~~-g~~l~v~~l~~~~~-------------- 119 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHST-EVKGPVTAICSFN-----GR-LVVAV-GNKLYVYDLDNSKT-------------- 119 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEET-----TE-EEEEE-TTEEEEEEEETTSS--------------
T ss_pred cEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhhC-----CE-EEEee-cCEEEEEEccCccc--------------
Confidence 77888887763 22333333 3478899988665 34 44433 36899999987420
Q ss_pred eeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643 78 LGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS 157 (279)
Q Consensus 78 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (279)
......+. ..-.+.++... ++ +++.|.....+.++.++.. ......... ...+.
T Consensus 120 --l~~~~~~~-~~~~i~sl~~~--~~--~I~vgD~~~sv~~~~~~~~--~~~l~~va~-d~~~~---------------- 173 (321)
T PF03178_consen 120 --LLKKAFYD-SPFYITSLSVF--KN--YILVGDAMKSVSLLRYDEE--NNKLILVAR-DYQPR---------------- 173 (321)
T ss_dssp --EEEEEEE--BSSSEEEEEEE--TT--EEEEEESSSSEEEEEEETT--TE-EEEEEE-ESS-B----------------
T ss_pred --chhhheec-ceEEEEEEecc--cc--EEEEEEcccCEEEEEEEcc--CCEEEEEEe-cCCCc----------------
Confidence 01111121 12256666655 44 8999999899998876431 111111111 11111
Q ss_pred CCCCceeEEEcCCCCeEEEecCCCeEEEEecCC-------C--cEEEEeec-CCcceEEE---EEcC--CC------cEE
Q 023643 158 PVPENNAIAVDPQGGAIFSAAGDSCAYCWDVES-------S--RIKMVFKG-HSDYLHCI---VARN--ST------NQI 216 (279)
Q Consensus 158 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------~--~~~~~~~~-~~~~i~~i---~~~~--~~------~~l 216 (279)
.++++.+-++++.++++..+|.+.++.... + +....... ....|+++ .+.| .+ ..+
T Consensus 174 ---~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i 250 (321)
T PF03178_consen 174 ---WVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQI 250 (321)
T ss_dssp ---EEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEE
T ss_pred ---cEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceE
Confidence 267888876667899999999999987752 1 22222222 23556776 4444 12 247
Q ss_pred EEecCCCeEEEE
Q 023643 217 VTGSEDGTARIW 228 (279)
Q Consensus 217 ~~~~~d~~i~vw 228 (279)
+.++.+|.|.+.
T Consensus 251 ~~~T~~G~Ig~l 262 (321)
T PF03178_consen 251 LYGTVDGSIGVL 262 (321)
T ss_dssp EEEETTS-EEEE
T ss_pred EEEecCCEEEEE
Confidence 778889988743
No 352
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.82 E-value=0.0034 Score=49.29 Aligned_cols=106 Identities=12% Similarity=0.144 Sum_probs=67.3
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCc-EEEEeec-CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC-CceEEE
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSR-IKMVFKG-HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS-GKCIKV 238 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~ 238 (279)
|++++-- .+ .|+++. .+.|.+|++...+ ....-.. ....+.++... +++++.|..-..+.++..+. .+.+..
T Consensus 91 V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~ 165 (321)
T PF03178_consen 91 VTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLIL 165 (321)
T ss_dssp EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEE
T ss_pred ceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEE
Confidence 5666554 33 455444 4889999998777 4443221 22355665554 67999999888888875543 332333
Q ss_pred ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
+.. .....+++++.|-++++.++++..+|.+.++
T Consensus 166 va~------d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l 199 (321)
T PF03178_consen 166 VAR------DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVL 199 (321)
T ss_dssp EEE------ESS-BEEEEEEEE-SSSEEEEEETTSEEEEE
T ss_pred EEe------cCCCccEEEEEEecCCcEEEEEcCCCeEEEE
Confidence 321 2335578889988776789999999998875
No 353
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.77 E-value=0.0021 Score=52.02 Aligned_cols=164 Identities=12% Similarity=0.083 Sum_probs=89.5
Q ss_pred eeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEE-ecCCCcEEEE--eCCCCCcccccccCCcccceeeecc
Q 023643 5 STNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVI-ASSDGSITSY--SIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 5 v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~-~~~dg~i~iw--~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
+.+++++..+...+.... +.-...+|+| ||+.|+- ...||...|| |+....
T Consensus 220 i~~~~l~~g~~~~i~~~~---g~~~~P~fsp----DG~~l~f~~~rdg~~~iy~~dl~~~~------------------- 273 (425)
T COG0823 220 IYYLDLNTGKRPVILNFN---GNNGAPAFSP----DGSKLAFSSSRDGSPDIYLMDLDGKN------------------- 273 (425)
T ss_pred EEEEeccCCccceeeccC---CccCCccCCC----CCCEEEEEECCCCCccEEEEcCCCCc-------------------
Confidence 566777766554444444 3344568999 7776654 5567765555 555421
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
...+..-.+.-..-.|+|+|+ .+..+.+..|.-.||-.+...............
T Consensus 274 -~~~Lt~~~gi~~~Ps~spdG~-~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~------------------------ 327 (425)
T COG0823 274 -LPRLTNGFGINTSPSWSPDGS-KIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGG------------------------ 327 (425)
T ss_pred -ceecccCCccccCccCCCCCC-EEEEEeCCCCCcceEEECCCCCceeEeeccCCC------------------------
Confidence 111222222222567999998 445566667777777654332222222222211
Q ss_pred ceeEEEcCCCCeEEEecC-CCe--EEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC
Q 023643 162 NNAIAVDPQGGAIFSAAG-DSC--AYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE 221 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~-d~~--i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 221 (279)
-..-.|+|+|++++..+. +|. |.+.|+.++...+.+. .......-.+.++++.+...+.
T Consensus 328 ~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 328 NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence 124578999998877664 343 6777776665444443 2223334456677776655443
No 354
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.76 E-value=0.0047 Score=53.44 Aligned_cols=92 Identities=23% Similarity=0.363 Sum_probs=63.8
Q ss_pred eEEEecCCCeEEEEecCCCc--EEE-Eee--cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccc
Q 023643 173 AIFSAAGDSCAYCWDVESSR--IKM-VFK--GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQL 247 (279)
Q Consensus 173 ~l~~~~~d~~i~i~d~~~~~--~~~-~~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 247 (279)
..+.|-.+..+..||.|-.. ++. ..+ .......|++-..+ .+||.|+.+|.||+|| +.|+..++. +
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd-~~g~~AKT~-------l 614 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTED-GYIAVGSNKGDIRLYD-RLGKRAKTA-------L 614 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCC-ceEEEEeCCCcEEeec-ccchhhhhc-------C
Confidence 45667778899999998642 222 111 12344667766554 5789999999999999 455443333 2
Q ss_pred cCcceeeeEEEEcCCCCEEEEEcCcc
Q 023643 248 KGVISCVSCITLDASESWLVRVRATN 273 (279)
Q Consensus 248 ~~~~~~v~~~~~~~~~~~l~~~~~d~ 273 (279)
.+-..+|.+|..+.||++|++.+..-
T Consensus 615 p~lG~pI~~iDvt~DGkwilaTc~ty 640 (794)
T PF08553_consen 615 PGLGDPIIGIDVTADGKWILATCKTY 640 (794)
T ss_pred CCCCCCeeEEEecCCCcEEEEeecce
Confidence 56678999999999999988776543
No 355
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.71 E-value=0.005 Score=45.87 Aligned_cols=149 Identities=11% Similarity=0.105 Sum_probs=92.5
Q ss_pred EEEEecCCCCceEEEEeeCCCc-EEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCC
Q 023643 94 YDVKFYGGNEDALLLSCGDDGR-ICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG 172 (279)
Q Consensus 94 ~~~~~~~~~~~~~l~s~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 172 (279)
..+.|+|..+ .-++.+-.=|+ ..++|.+............+.|.- -.=.|+|+|.
T Consensus 71 Hgi~~~p~~~-ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfy-----------------------GHGvfs~dG~ 126 (366)
T COG3490 71 HGIAFHPALP-RAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFY-----------------------GHGVFSPDGR 126 (366)
T ss_pred CCeecCCCCc-ceEEEEecCCceEEEECCCCCcCcEEEecccCceee-----------------------cccccCCCCc
Confidence 3567777665 34555555555 347887654433333333332211 1125899999
Q ss_pred eEEEecCC-----CeEEEEecCCC-cEEEEeecCCcceEEEEEcCCCcEEEEecC------------------CCeEEEE
Q 023643 173 AIFSAAGD-----SCAYCWDVESS-RIKMVFKGHSDYLHCIVARNSTNQIVTGSE------------------DGTARIW 228 (279)
Q Consensus 173 ~l~~~~~d-----~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------------------d~~i~vw 228 (279)
+|+..-+| |.|-+||.+.+ +.+.++..|.-....+.+.+||+.++.+.. .-++.+.
T Consensus 127 ~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvll 206 (366)
T COG3490 127 LLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLL 206 (366)
T ss_pred EEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEE
Confidence 99876544 78999999854 456678788777888999999999887642 1123344
Q ss_pred eCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643 229 DCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR 270 (279)
Q Consensus 229 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 270 (279)
|..+|+.+.+...+. ..+...|..++..+||..++.+-
T Consensus 207 d~atG~liekh~Lp~----~l~~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 207 DAATGNLIEKHTLPA----SLRQLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred eccccchhhhccCch----hhhhcceeeeeeCCCCcEEEEEE
Confidence 444555444433221 24556788889999888766553
No 356
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.70 E-value=0.0001 Score=52.54 Aligned_cols=101 Identities=10% Similarity=0.134 Sum_probs=68.7
Q ss_pred CCeEEEecCCCeEEEEecCC-CcEEEEeecCCcceEEEEE-cCCCcEEEEecCCCeEEEEeCCCCceEEEecCCcccccc
Q 023643 171 GGAIFSAAGDSCAYCWDVES-SRIKMVFKGHSDYLHCIVA-RNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLK 248 (279)
Q Consensus 171 ~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~i~~-~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 248 (279)
+..+++|+.+|.|++|.... +.....+..-...|.++.- -.++.+..+++.||.|+.|++.-++.+... .
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~--------g 141 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV--------G 141 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeee--------c
Confidence 45789999999999998762 1111111222233433322 224668899999999999999888877776 4
Q ss_pred Ccc-eeeeEEEEcCCCCEEEEE--cCcceEEeCC
Q 023643 249 GVI-SCVSCITLDASESWLVRV--RATNYVILFS 279 (279)
Q Consensus 249 ~~~-~~v~~~~~~~~~~~l~~~--~~d~~i~~wd 279 (279)
.|+ .++.....+..++.++.+ |.|..++.|+
T Consensus 142 ~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 142 QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWN 175 (238)
T ss_pred cccCCCcceeEEecCCceEEeeccccchhhhhcc
Confidence 555 556666666677777777 7788888875
No 357
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.64 E-value=0.017 Score=44.68 Aligned_cols=99 Identities=15% Similarity=0.164 Sum_probs=67.1
Q ss_pred ceeEEEcCCCCeEEEecC-CCeEEEEecCC--C----c-EEEEeecCCcceEEEEEcCCCcEEEEecCCC-eEEEEeCCC
Q 023643 162 NNAIAVDPQGGAIFSAAG-DSCAYCWDVES--S----R-IKMVFKGHSDYLHCIVARNSTNQIVTGSEDG-TARIWDCKS 232 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~--~----~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~-~i~vwd~~~ 232 (279)
-+.|+||||++.|+.+.. .+.|+-|++.. + + ....+....+..-.++...+|++.+++-.+| .|.+|+..
T Consensus 165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd- 243 (307)
T COG3386 165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD- 243 (307)
T ss_pred cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-
Confidence 478999999988877755 47888887752 1 1 1222223446667788888888876555554 89999987
Q ss_pred CceEEEecCCccccccCcceeeeEEEEc-CCCCEEEEE
Q 023643 233 GKCIKVIDPVKDKQLKGVISCVSCITLD-ASESWLVRV 269 (279)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~ 269 (279)
|+++..+.. ....+++++|- |+.+.|...
T Consensus 244 G~l~~~i~l--------P~~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 244 GKLLGEIKL--------PVKRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred CcEEEEEEC--------CCCCCccceEeCCCcCEEEEE
Confidence 999988843 33567888885 444544433
No 358
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.63 E-value=0.02 Score=48.59 Aligned_cols=106 Identities=12% Similarity=0.128 Sum_probs=59.6
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEE---EecCCCcE-E---EEee-cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYC---WDVESSRI-K---MVFK-GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS 232 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i---~d~~~~~~-~---~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~ 232 (279)
.|..+.|+|||..++... ++.|++ -....++. + +.+. .-...+..+.|.+++.++ .+..++.-.+|.+.-
T Consensus 449 ~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~v 526 (591)
T PRK13616 449 PISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNL 526 (591)
T ss_pred CcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEec
Confidence 489999999999887765 477777 44444541 1 1122 223346789999988855 444445444554432
Q ss_pred -CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEE
Q 023643 233 -GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVI 276 (279)
Q Consensus 233 -~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 276 (279)
|.....+.. ......+..++-+++ .|+.+..++.+.
T Consensus 527 DG~~~~~~~~------~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 527 DGSNSDALPS------RNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred CCccccccCC------CCccCceEEEecCCc--eEEEEcCCceEE
Confidence 222222111 123456777777763 355555666443
No 359
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.63 E-value=0.0073 Score=45.04 Aligned_cols=169 Identities=14% Similarity=0.147 Sum_probs=87.9
Q ss_pred cccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCcee
Q 023643 85 FLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNA 164 (279)
Q Consensus 85 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 164 (279)
.+.+-...+.+|+|.|+.. .++++....+.|...+.+ + .......+.+.. ....
T Consensus 16 ~l~g~~~e~SGLTy~pd~~-tLfaV~d~~~~i~els~~-G-~vlr~i~l~g~~-----------------------D~Eg 69 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTG-TLFAVQDEPGEIYELSLD-G-KVLRRIPLDGFG-----------------------DYEG 69 (248)
T ss_dssp E-TT--S-EEEEEEETTTT-EEEEEETTTTEEEEEETT----EEEEEE-SS-S-----------------------SEEE
T ss_pred ECCCccCCccccEEcCCCC-eEEEEECCCCEEEEEcCC-C-CEEEEEeCCCCC-----------------------Ccee
Confidence 3444455699999999866 366777777777776643 1 111111122210 1467
Q ss_pred EEEcCCCCeEEEecCCCeEEEEecCCC------cEEEEee-----cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC-
Q 023643 165 IAVDPQGGAIFSAAGDSCAYCWDVESS------RIKMVFK-----GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS- 232 (279)
Q Consensus 165 ~~~~~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~-----~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~- 232 (279)
|++..++.++++.-.++.+.++++... .....+. .+...+-.++|+|.++.|+.+-...-..+|.++.
T Consensus 70 I~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~ 149 (248)
T PF06977_consen 70 ITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGF 149 (248)
T ss_dssp EEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEEST
T ss_pred EEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccc
Confidence 888877766666666899999988432 1112222 2445688999999877777777766667776653
Q ss_pred --CceEEEecCCccccccCcceeeeEEEEcCC-CCEEEEEcCcceEEeCC
Q 023643 233 --GKCIKVIDPVKDKQLKGVISCVSCITLDAS-ESWLVRVRATNYVILFS 279 (279)
Q Consensus 233 --~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd 279 (279)
...+.................+++++++|. +++++.......+..+|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d 199 (248)
T PF06977_consen 150 PGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD 199 (248)
T ss_dssp T-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-
T ss_pred cCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC
Confidence 222222111000001223345788999985 55666666666665543
No 360
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.023 Score=45.78 Aligned_cols=167 Identities=13% Similarity=0.136 Sum_probs=107.0
Q ss_pred ceEEEEECCCCCCCCCEEEEecC---CCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643 27 TVFRTVWGPSKDGSPDTIVIASS---DGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE 103 (279)
Q Consensus 27 ~v~~~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 103 (279)
.-..++++| ++..+.++.. ++++.+.|..+. ........-..+ ..+++.|+++
T Consensus 117 ~P~~~~~~~----~~~~vYV~n~~~~~~~vsvid~~t~-------------------~~~~~~~vG~~P-~~~a~~p~g~ 172 (381)
T COG3391 117 GPVGLAVDP----DGKYVYVANAGNGNNTVSVIDAATN-------------------KVTATIPVGNTP-TGVAVDPDGN 172 (381)
T ss_pred CCceEEECC----CCCEEEEEecccCCceEEEEeCCCC-------------------eEEEEEecCCCc-ceEEECCCCC
Confidence 556788999 6766655544 678888888773 333332222234 8899999998
Q ss_pred ceEEEEe-eCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCC--
Q 023643 104 DALLLSC-GDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD-- 180 (279)
Q Consensus 104 ~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-- 180 (279)
.++.+ ..++.|.+.|.+...... ...... + .... .-..+.++|++..+++....
T Consensus 173 --~vyv~~~~~~~v~vi~~~~~~v~~----~~~~~~--~-----~~~~----------~P~~i~v~~~g~~~yV~~~~~~ 229 (381)
T COG3391 173 --KVYVTNSDDNTVSVIDTSGNSVVR----GSVGSL--V-----GVGT----------GPAGIAVDPDGNRVYVANDGSG 229 (381)
T ss_pred --eEEEEecCCCeEEEEeCCCcceec----cccccc--c-----ccCC----------CCceEEECCCCCEEEEEeccCC
Confidence 44444 578999999965321110 000000 0 0000 12578999999977765543
Q ss_pred -CeEEEEecCCCcEEEE-eecCCcceEEEEEcCCCcEEEEe-cCCCeEEEEeCCCCceEEEec
Q 023643 181 -SCAYCWDVESSRIKMV-FKGHSDYLHCIVARNSTNQIVTG-SEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 181 -~~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~vwd~~~~~~~~~~~ 240 (279)
+.+...|..++..... ..........+..+|+|+.+.+. +..+.+.+-|..+.+....+.
T Consensus 230 ~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 230 SNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 5899999988877665 22111156678999999988777 445889999998877777654
No 361
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.62 E-value=0.019 Score=44.49 Aligned_cols=105 Identities=13% Similarity=0.214 Sum_probs=63.7
Q ss_pred EEcCCCCeEEEecCCCeEEEEecCCCcEEE--EeecC----------CcceEEEEEcCCCcEEEEecC---CC-------
Q 023643 166 AVDPQGGAIFSAAGDSCAYCWDVESSRIKM--VFKGH----------SDYLHCIVARNSTNQIVTGSE---DG------- 223 (279)
Q Consensus 166 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~----------~~~i~~i~~~~~~~~l~~~~~---d~------- 223 (279)
++...+..++-.+.+|.|+--|+....... .+..- .+.-.-+++++..+.|..-.. ++
T Consensus 190 ~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt 269 (342)
T PF06433_consen 190 AYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT 269 (342)
T ss_dssp EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred ceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence 444445555557778999998887554222 22110 112334677775444433221 22
Q ss_pred eEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCC-EEEEE-cCcceEEeCC
Q 023643 224 TARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASES-WLVRV-RATNYVILFS 279 (279)
Q Consensus 224 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~~d~~i~~wd 279 (279)
.|-++|+.+++.+.+++. ..++.+|..+.+.+ +|++. ..++.+.+||
T Consensus 270 eVWv~D~~t~krv~Ri~l---------~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPL---------EHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EEEEEETTTTEEEEEEEE---------EEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCeEEEEEeC---------CCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 277889999999999842 23577899988754 56544 5678898886
No 362
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.59 E-value=0.0083 Score=50.84 Aligned_cols=102 Identities=8% Similarity=0.057 Sum_probs=58.2
Q ss_pred eeEEEcCCCCeEEEecCC------------CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEE---
Q 023643 163 NAIAVDPQGGAIFSAAGD------------SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARI--- 227 (279)
Q Consensus 163 ~~~~~~~~~~~l~~~~~d------------~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~v--- 227 (279)
+.-.|+|++..+++.... +.+.+.+++.++... .....|..+.|+|||..++... ++.|.+
T Consensus 400 t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~V 475 (591)
T PRK13616 400 TRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVV 475 (591)
T ss_pred CCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEE
Confidence 566899998877666432 233333444333322 2345799999999999887765 577776
Q ss_pred EeCCCCceEEEecCCccccc-cCcceeeeEEEEcCCCCEEEEEcCcc
Q 023643 228 WDCKSGKCIKVIDPVKDKQL-KGVISCVSCITLDASESWLVRVRATN 273 (279)
Q Consensus 228 wd~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~ 273 (279)
-....|. ..+.... .+ .+-...+..+.|..++.++ ++..++
T Consensus 476 vr~~~G~--~~l~~~~--~l~~~l~~~~~~l~W~~~~~L~-V~~~~~ 517 (591)
T PRK13616 476 EQTEDGQ--YALTNPR--EVGPGLGDTAVSLDWRTGDSLV-VGRSDP 517 (591)
T ss_pred EeCCCCc--eeecccE--EeecccCCccccceEecCCEEE-EEecCC
Confidence 4434454 2221000 00 1222335778999988855 444433
No 363
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.035 Score=44.72 Aligned_cols=181 Identities=11% Similarity=0.111 Sum_probs=110.4
Q ss_pred EEEECCCCCCCCC-EEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEE
Q 023643 30 RTVWGPSKDGSPD-TIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLL 108 (279)
Q Consensus 30 ~~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 108 (279)
.++.++ .+. ..++...++.|.+.|..+. +......- ......+.+.|+++ .+.
T Consensus 78 ~i~v~~----~~~~vyv~~~~~~~v~vid~~~~-------------------~~~~~~~v-G~~P~~~~~~~~~~--~vY 131 (381)
T COG3391 78 GVAVNP----AGNKVYVTTGDSNTVSVIDTATN-------------------TVLGSIPV-GLGPVGLAVDPDGK--YVY 131 (381)
T ss_pred ceeeCC----CCCeEEEecCCCCeEEEEcCccc-------------------ceeeEeee-ccCCceEEECCCCC--EEE
Confidence 456666 455 4555556688999996652 22222211 11456789999987 444
Q ss_pred EeeC---CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec-CCCeEE
Q 023643 109 SCGD---DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA-GDSCAY 184 (279)
Q Consensus 109 s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~ 184 (279)
.+.. ++++.+.|..+...... ...+. . -..++++|+++.+++.. .++.|.
T Consensus 132 V~n~~~~~~~vsvid~~t~~~~~~--~~vG~--~----------------------P~~~a~~p~g~~vyv~~~~~~~v~ 185 (381)
T COG3391 132 VANAGNGNNTVSVIDAATNKVTAT--IPVGN--T----------------------PTGVAVDPDGNKVYVTNSDDNTVS 185 (381)
T ss_pred EEecccCCceEEEEeCCCCeEEEE--EecCC--C----------------------cceEEECCCCCeEEEEecCCCeEE
Confidence 4433 67888887543211111 11111 0 15789999999766655 789999
Q ss_pred EEecCCCcEEE-E---eecCCcceEEEEEcCCCcEEEEecCC---CeEEEEeCCCCceEEEecCCccccccCcceeeeEE
Q 023643 185 CWDVESSRIKM-V---FKGHSDYLHCIVARNSTNQIVTGSED---GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCI 257 (279)
Q Consensus 185 i~d~~~~~~~~-~---~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 257 (279)
+.|.......+ . ...-......+.++|++.++...... +.+...|..++.....-.. .+.. ....+
T Consensus 186 vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~------~~~~-~~~~v 258 (381)
T COG3391 186 VIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP------VGSG-APRGV 258 (381)
T ss_pred EEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc------cccC-CCCce
Confidence 99987666553 1 01122344678899998865554433 5899999988877665211 1111 34567
Q ss_pred EEcCCCCEEEEE
Q 023643 258 TLDASESWLVRV 269 (279)
Q Consensus 258 ~~~~~~~~l~~~ 269 (279)
.++|+|..+.+.
T Consensus 259 ~~~p~g~~~yv~ 270 (381)
T COG3391 259 AVDPAGKAAYVA 270 (381)
T ss_pred eECCCCCEEEEE
Confidence 889999887776
No 364
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.00093 Score=58.12 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=71.4
Q ss_pred CCCeEEEecCCCeEEEEecCCC-cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCcccccc
Q 023643 170 QGGAIFSAAGDSCAYCWDVESS-RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLK 248 (279)
Q Consensus 170 ~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 248 (279)
.+..++.|+..|.+-..|.... .+...-+.-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..+. .
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~----a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHG----A 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecC----C
Confidence 4557888888899988887643 2222223346799999999999999999999999999999999998884331 1
Q ss_pred CcceeeeEEEEcCCCCEEEEEcCcce
Q 023643 249 GVISCVSCITLDASESWLVRVRATNY 274 (279)
Q Consensus 249 ~~~~~v~~~~~~~~~~~l~~~~~d~~ 274 (279)
.+ ..|-.+.+..++..++++...|.
T Consensus 174 p~-t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 174 PV-TGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred cc-ceEEEEEEeCCCcEEEEccCCCc
Confidence 12 22333344445567888777774
No 365
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.0034 Score=54.84 Aligned_cols=65 Identities=25% Similarity=0.330 Sum_probs=49.5
Q ss_pred CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEe
Q 023643 40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGW 119 (279)
Q Consensus 40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 119 (279)
.+..++.|++.|.+-..|+... ..+...-..-.++|++++|+.++. .++.|-.+|.|.+|
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n------------------L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~ 157 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN------------------LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVW 157 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc------------------cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEE
Confidence 3467889999999988888753 122122222467999999999998 99999999999999
Q ss_pred ecCCC
Q 023643 120 RWKEF 124 (279)
Q Consensus 120 ~~~~~ 124 (279)
|+...
T Consensus 158 D~~~~ 162 (1206)
T KOG2079|consen 158 DMHRA 162 (1206)
T ss_pred EccCC
Confidence 98653
No 366
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.0057 Score=53.92 Aligned_cols=210 Identities=12% Similarity=0.097 Sum_probs=115.5
Q ss_pred EEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCC-ccCeEEEEecCCCCceEEE
Q 023643 30 RTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGH-DGPAYDVKFYGGNEDALLL 108 (279)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~ 108 (279)
.++.++ .-.++++++..+.+.|+-....- .+....+....+++..+...++-| .-++..+...++..-..++
T Consensus 46 ~la~sn----~ysl~Fa~~nsk~L~vfgtknlL---i~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~ 118 (1405)
T KOG3630|consen 46 NLAISN----SYSLFFAASNSKSLAVFGTKNLL---IDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVV 118 (1405)
T ss_pred hhhccc----ccceEEEecCCcceeeeccccce---eecccccccccccccccccceeeeccccceEEEeccCCceEEEE
Confidence 345555 44556666666777766544310 001111111111112223334333 2345555556665522444
Q ss_pred EeeCCCcEEEeecCCCccCcce--eeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCC-eEEEecCCCeEEE
Q 023643 109 SCGDDGRICGWRWKEFTESKVP--INLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG-AIFSAAGDSCAYC 185 (279)
Q Consensus 109 s~~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i 185 (279)
..+.+-.|..||++........ ..+..+.. .+ .......++.|+|.-. ..++...|+.|++
T Consensus 119 ~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~t-s~---------------ek~vf~~~~~wnP~vp~n~av~l~dlsl~V 182 (1405)
T KOG3630|consen 119 STSNGEAVYSFDLEEFSESRYETTVPLKNSAT-SF---------------EKPVFQLKNVWNPLVPLNSAVDLSDLSLRV 182 (1405)
T ss_pred EecCCceEEEEehHhhhhhhhhhccccccccc-hh---------------ccccccccccccCCccchhhhhccccchhh
Confidence 5555567889998764322111 11111000 00 0001246788988644 4455667888888
Q ss_pred EecCCCc-EEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCC
Q 023643 186 WDVESSR-IKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASES 264 (279)
Q Consensus 186 ~d~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 264 (279)
..+.... .+..+. -....+|++|+|.|+.++.|-..|++.-|.. +++....+.... ......|.+++|-....
T Consensus 183 ~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp----~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 183 KSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPP----VEENYRVLSVTWLSTQE 256 (1405)
T ss_pred hhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCC----cCCCcceeEEEEeccee
Confidence 8765332 222332 4566899999999999999999999998874 566556665433 12246799999987776
Q ss_pred EEEE
Q 023643 265 WLVR 268 (279)
Q Consensus 265 ~l~~ 268 (279)
+++.
T Consensus 257 flvv 260 (1405)
T KOG3630|consen 257 FLVV 260 (1405)
T ss_pred EEEE
Confidence 6664
No 367
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.45 E-value=0.00052 Score=36.33 Aligned_cols=31 Identities=26% Similarity=0.535 Sum_probs=28.6
Q ss_pred ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCC
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIP 59 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 59 (279)
..+|..++|+| ..++||.++.+|.|.++.++
T Consensus 11 ~~~v~~~~w~P----~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCP----TMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECC----CCCEEEEEECCCeEEEEECC
Confidence 46799999999 89999999999999999985
No 368
>PHA02713 hypothetical protein; Provisional
Probab=97.44 E-value=0.029 Score=47.61 Aligned_cols=82 Identities=7% Similarity=-0.027 Sum_probs=42.2
Q ss_pred eEEEEecCCCcE--EEEeecCCcceEEEEEcCCCcEEEEecCC------CeEEEEeCCC-CceEEEecCCccccccCcce
Q 023643 182 CAYCWDVESSRI--KMVFKGHSDYLHCIVARNSTNQIVTGSED------GTARIWDCKS-GKCIKVIDPVKDKQLKGVIS 252 (279)
Q Consensus 182 ~i~i~d~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~ 252 (279)
.+..||..+.+- +..+....... +++ .-+++..+.|+.+ ..+..||..+ .+....-.. .....
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m------~~~r~ 504 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT------ESRLS 504 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc------Ccccc
Confidence 477888876533 22222111111 122 2246777777754 2467899887 454322211 12222
Q ss_pred eeeEEEEcCCCCEEEEEcCcc
Q 023643 253 CVSCITLDASESWLVRVRATN 273 (279)
Q Consensus 253 ~v~~~~~~~~~~~l~~~~~d~ 273 (279)
....+++ ++++.++|+.++
T Consensus 505 ~~~~~~~--~~~iyv~Gg~~~ 523 (557)
T PHA02713 505 ALHTILH--DNTIMMLHCYES 523 (557)
T ss_pred cceeEEE--CCEEEEEeeecc
Confidence 2333333 678888998887
No 369
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.42 E-value=0.00073 Score=35.76 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=30.1
Q ss_pred CcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce
Q 023643 201 SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC 235 (279)
Q Consensus 201 ~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~ 235 (279)
...|.+++|+|...+||.++.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456899999999999999999999999998 5554
No 370
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.013 Score=47.52 Aligned_cols=89 Identities=19% Similarity=0.369 Sum_probs=60.6
Q ss_pred EEecCCCeEEEEecCCC-c-EEEEeecCC----cceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCcccccc
Q 023643 175 FSAAGDSCAYCWDVESS-R-IKMVFKGHS----DYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLK 248 (279)
Q Consensus 175 ~~~~~d~~i~i~d~~~~-~-~~~~~~~~~----~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 248 (279)
++|-.+..|.-||.+-. . .+..-++|+ ....|.+-. ...+|++||.+|.||+||. .+....+.- +
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTAl-------P 468 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTAL-------P 468 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhhcc-------c
Confidence 34666888999998842 2 222223332 223444443 3468999999999999996 665554442 5
Q ss_pred CcceeeeEEEEcCCCCEEEEEcCc
Q 023643 249 GVISCVSCITLDASESWLVRVRAT 272 (279)
Q Consensus 249 ~~~~~v~~~~~~~~~~~l~~~~~d 272 (279)
+...+|..+..+.+|++|++.+..
T Consensus 469 gLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 469 GLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred ccCCceeeEEeeccCcEEEEeccc
Confidence 777899999999999998876654
No 371
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.37 E-value=0.041 Score=42.63 Aligned_cols=69 Identities=14% Similarity=0.207 Sum_probs=46.9
Q ss_pred ceeEEEcCCCCeEEEecC-----------CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEe-cCCCeEEEEe
Q 023643 162 NNAIAVDPQGGAIFSAAG-----------DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTG-SEDGTARIWD 229 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~vwd 229 (279)
.+.+...|+|.+.++... -|.++.+|. .+..++.+..+-..-+.|+||||++.|..+ +..+.|.-|+
T Consensus 113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD 191 (307)
T ss_pred CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence 467788888876555333 144555554 566767666666667889999999766555 4558888887
Q ss_pred CC
Q 023643 230 CK 231 (279)
Q Consensus 230 ~~ 231 (279)
+.
T Consensus 192 ~d 193 (307)
T COG3386 192 LD 193 (307)
T ss_pred cC
Confidence 75
No 372
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.35 E-value=0.0092 Score=43.87 Aligned_cols=98 Identities=11% Similarity=0.020 Sum_probs=70.3
Q ss_pred CeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcc
Q 023643 172 GAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVI 251 (279)
Q Consensus 172 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 251 (279)
.+++.|++.+.+.-.|..+|+.+.+-. -..++.+-+.- -|++++.|+..|.+++.+..+|.....+.... .
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-------~ 94 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-------T 94 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh-------h
Confidence 478889999999999999998876532 22333332221 47889999999999999999997777663211 1
Q ss_pred eeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 252 SCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 252 ~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
-.+ ....++++..+.+|+.|++.+.-|
T Consensus 95 vk~-~a~~d~~~glIycgshd~~~yalD 121 (354)
T KOG4649|consen 95 VKV-RAQCDFDGGLIYCGSHDGNFYALD 121 (354)
T ss_pred hcc-ceEEcCCCceEEEecCCCcEEEec
Confidence 112 234577899999999999887543
No 373
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.34 E-value=0.042 Score=42.08 Aligned_cols=160 Identities=16% Similarity=0.213 Sum_probs=89.2
Q ss_pred CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEe
Q 023643 40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGW 119 (279)
Q Consensus 40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 119 (279)
.++.|+.|+.+| |.+++.... ..+.... +..+|..+...|+-+ .|+.-+ |+.+.++
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~------------------~~~~~i~--~~~~I~ql~vl~~~~--~llvLs-d~~l~~~ 61 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDP------------------SKPTRIL--KLSSITQLSVLPELN--LLLVLS-DGQLYVY 61 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCC------------------ccceeEe--ecceEEEEEEecccC--EEEEEc-CCccEEE
Confidence 678999999998 899998321 1122222 233499999999876 665554 5999999
Q ss_pred ecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEE--EcCCC-CeEEEecCCCeEEEEecCCC-----
Q 023643 120 RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIA--VDPQG-GAIFSAAGDSCAYCWDVESS----- 191 (279)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~-~~l~~~~~d~~i~i~d~~~~----- 191 (279)
++.................. .... .......+...+ -...+ ..|+++. ...|.+|.....
T Consensus 62 ~L~~l~~~~~~~~~~~~~~~-~~~~----------~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~ 129 (275)
T PF00780_consen 62 DLDSLEPVSTSAPLAFPKSR-SLPT----------KLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFS 129 (275)
T ss_pred Echhhccccccccccccccc-cccc----------cccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCccccc
Confidence 98764333211100000000 0000 000000123333 11223 3444444 458888877642
Q ss_pred cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEe
Q 023643 192 RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239 (279)
Q Consensus 192 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 239 (279)
+..+++. -...+.+++|. ++.++.|..++ ..+.|+.++.....+
T Consensus 130 ~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 130 KLLKEIS-LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELL 173 (275)
T ss_pred ceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEe
Confidence 4555555 34678899998 66777776554 777898877665444
No 374
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.30 E-value=0.078 Score=44.35 Aligned_cols=61 Identities=16% Similarity=0.228 Sum_probs=44.7
Q ss_pred CCCeEEEEecCCCcEEEEeecCC--------cceE--EEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 179 GDSCAYCWDVESSRIKMVFKGHS--------DYLH--CIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 179 ~d~~i~i~d~~~~~~~~~~~~~~--------~~i~--~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
.+|.+.-.|+.+++.+-+..... .+.. .+. ..+..++.++.||.|+.+|.++|+.+.+.+.
T Consensus 364 ~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 364 GKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred CceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 46889999999998887765331 1111 112 2467888999999999999999999988753
No 375
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.26 E-value=0.021 Score=45.55 Aligned_cols=192 Identities=13% Similarity=0.114 Sum_probs=93.6
Q ss_pred CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccc
Q 023643 3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEP 82 (279)
Q Consensus 3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (279)
+...+||+++.+...+ ......+....|+| +|+.+|... ++.|.+++..++.... +. ..+...+.-+.+
T Consensus 23 ~~y~i~d~~~~~~~~l---~~~~~~~~~~~~sP----~g~~~~~v~-~~nly~~~~~~~~~~~-lT--~dg~~~i~nG~~ 91 (353)
T PF00930_consen 23 GDYYIYDIETGEITPL---TPPPPKLQDAKWSP----DGKYIAFVR-DNNLYLRDLATGQETQ-LT--TDGEPGIYNGVP 91 (353)
T ss_dssp EEEEEEETTTTEEEES---S-EETTBSEEEE-S----SSTEEEEEE-TTEEEEESSTTSEEEE-SE--S--TTTEEESB-
T ss_pred eeEEEEecCCCceEEC---cCCccccccceeec----CCCeeEEEe-cCceEEEECCCCCeEE-ec--cccceeEEcCcc
Confidence 4567788877543222 22257788999999 899988875 5689999887652211 11 111111111111
Q ss_pred cccccCC-ccCeEEEEecCCCCceEEEEeeC-CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 83 DGFLHGH-DGPAYDVKFYGGNEDALLLSCGD-DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 83 ~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
--..+.- -+.-..+-|+|+++ +|+.... +..|+.+.+-..... ....+
T Consensus 92 dwvyeEEv~~~~~~~~WSpd~~--~la~~~~d~~~v~~~~~~~~~~~--------~~~yp-------------------- 141 (353)
T PF00930_consen 92 DWVYEEEVFDRRSAVWWSPDSK--YLAFLRFDEREVPEYPLPDYSPP--------DSQYP-------------------- 141 (353)
T ss_dssp -HHHHHHTSSSSBSEEE-TTSS--EEEEEEEE-TTS-EEEEEEESSS--------TESS---------------------
T ss_pred ceeccccccccccceEECCCCC--EEEEEEECCcCCceEEeeccCCc--------cccCC--------------------
Confidence 0000000 11124688999998 7766544 444544443211000 00000
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEE-Ee----ecCCcceEEEEEcCCCcEEEEec--CC---CeEEEEeC
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKM-VF----KGHSDYLHCIVARNSTNQIVTGS--ED---GTARIWDC 230 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~----~~~~~~i~~i~~~~~~~~l~~~~--~d---~~i~vwd~ 230 (279)
.+..+.+-.-|.... .-.+.++|+.+++... .. ......+..+.|.++++.|+..- .+ ..+.++|.
T Consensus 142 ~~~~~~YPk~G~~np----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~ 217 (353)
T PF00930_consen 142 EVESIRYPKAGDPNP----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDA 217 (353)
T ss_dssp EEEEEE--BTTS-------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEE
T ss_pred cccccccCCCCCcCC----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEEC
Confidence 023333321122111 1236778888776532 11 23456788999999988444332 22 23677788
Q ss_pred CCCceEEEe
Q 023643 231 KSGKCIKVI 239 (279)
Q Consensus 231 ~~~~~~~~~ 239 (279)
.+++....+
T Consensus 218 ~tg~~~~~~ 226 (353)
T PF00930_consen 218 STGETRVVL 226 (353)
T ss_dssp CTTTCEEEE
T ss_pred CCCceeEEE
Confidence 777665444
No 376
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.23 E-value=0.0018 Score=51.55 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=64.0
Q ss_pred cCCCCeEEEec---------CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE
Q 023643 168 DPQGGAIFSAA---------GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV 238 (279)
Q Consensus 168 ~~~~~~l~~~~---------~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 238 (279)
|||+++++... ..+.+.+||+.+++....... ...+....|+|+|+.++... ++.|.++++.+++..+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 46666665532 246789999998766554443 56788899999999998875 67899999887754433
Q ss_pred ecCCccccccCc---------ceeeeEEEEcCCCCEEEEEcCc
Q 023643 239 IDPVKDKQLKGV---------ISCVSCITLDASESWLVRVRAT 272 (279)
Q Consensus 239 ~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~d 272 (279)
-.......+.+- -..-.++-||||+++||....|
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 321111000000 0123567899999999876543
No 377
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.14 E-value=0.1 Score=44.44 Aligned_cols=95 Identities=17% Similarity=0.205 Sum_probs=52.5
Q ss_pred CCCeEEEecCC------CeEEEEecCCCcEEE--EeecCCcceEEEEEcCCCcEEEEecCCCe-----EEEEeCCCCceE
Q 023643 170 QGGAIFSAAGD------SCAYCWDVESSRIKM--VFKGHSDYLHCIVARNSTNQIVTGSEDGT-----ARIWDCKSGKCI 236 (279)
Q Consensus 170 ~~~~l~~~~~d------~~i~i~d~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~d~~-----i~vwd~~~~~~~ 236 (279)
++...++|+.+ .++..||..+.+-.. .+........ ++. -++..++.|+.|+. |..||..+.+..
T Consensus 427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWT 504 (571)
T ss_pred CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCcee
Confidence 56666777644 457788887764332 2322222222 222 35788888888773 777888877665
Q ss_pred EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcce
Q 023643 237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNY 274 (279)
Q Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 274 (279)
..-.. ......+..+.. ++...++|+.||.
T Consensus 505 ~v~~m------~~~rs~~g~~~~--~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 505 MVAPM------TSPRSAVGVVVL--GGKLYAVGGFDGN 534 (571)
T ss_pred EcccC------ccccccccEEEE--CCEEEEEecccCc
Confidence 44211 112222222222 4677778877763
No 378
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.05 E-value=0.061 Score=41.19 Aligned_cols=129 Identities=13% Similarity=0.125 Sum_probs=73.2
Q ss_pred EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEE
Q 023643 106 LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYC 185 (279)
Q Consensus 106 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 185 (279)
.|+.|..+| +.+++++............ .|..+...|+-+.+++-+ |+.+++
T Consensus 9 ~L~vGt~~G-l~~~~~~~~~~~~~i~~~~--------------------------~I~ql~vl~~~~~llvLs-d~~l~~ 60 (275)
T PF00780_consen 9 RLLVGTEDG-LYVYDLSDPSKPTRILKLS--------------------------SITQLSVLPELNLLLVLS-DGQLYV 60 (275)
T ss_pred EEEEEECCC-EEEEEecCCccceeEeecc--------------------------eEEEEEEecccCEEEEEc-CCccEE
Confidence 888998888 8998872211111111111 167888888777776665 599999
Q ss_pred EecCCCcEEEEe--------------ecCCcceEEEE--EcCCCcEEEEecCCCeEEEEeCCCC-----ceEEEecCCcc
Q 023643 186 WDVESSRIKMVF--------------KGHSDYLHCIV--ARNSTNQIVTGSEDGTARIWDCKSG-----KCIKVIDPVKD 244 (279)
Q Consensus 186 ~d~~~~~~~~~~--------------~~~~~~i~~i~--~~~~~~~l~~~~~d~~i~vwd~~~~-----~~~~~~~~~~~ 244 (279)
+++..-...... ......+...+ -...+...+.......|.+|..... +..+.+..
T Consensus 61 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l--- 137 (275)
T PF00780_consen 61 YDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL--- 137 (275)
T ss_pred EEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc---
Confidence 998764433311 01122333333 1123444444445668988887653 34445432
Q ss_pred ccccCcceeeeEEEEcCCCCEEEEEcCcc
Q 023643 245 KQLKGVISCVSCITLDASESWLVRVRATN 273 (279)
Q Consensus 245 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 273 (279)
...+..++|. ++.|+.|..++
T Consensus 138 ------p~~~~~i~~~--~~~i~v~~~~~ 158 (275)
T PF00780_consen 138 ------PDPPSSIAFL--GNKICVGTSKG 158 (275)
T ss_pred ------CCCcEEEEEe--CCEEEEEeCCc
Confidence 2467788887 45566665544
No 379
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=97.02 E-value=0.052 Score=46.51 Aligned_cols=174 Identities=13% Similarity=0.109 Sum_probs=94.7
Q ss_pred CCEEEEecCCCcEEEEeCCCCCcccc------cccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCC
Q 023643 41 PDTIVIASSDGSITSYSIPSCISKLP------LGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDG 114 (279)
Q Consensus 41 ~~~l~~~~~dg~i~iw~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 114 (279)
.++|+++. .+.|.||++........ +...+...... .....+.. -...|+-|....-+....|+.|..||
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~--D~~~s~~p-~PHtIN~i~v~~lg~~EVLl~c~DdG 124 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTP--DRLISTWP-FPHTINFIKVGDLGGEEVLLLCTDDG 124 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccc--cccccCCC-CCceeeEEEecccCCeeEEEEEecCC
Confidence 45666654 56899999876433211 01111100000 01111111 12235666555444445999999999
Q ss_pred cEEEeecCCCccCcceee------eccCcccceEEeecCCCCCccccCCCCCCceeEEEc--CCCCeEEEecCCCeEEEE
Q 023643 115 RICGWRWKEFTESKVPIN------LQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVD--PQGGAIFSAAGDSCAYCW 186 (279)
Q Consensus 115 ~i~iw~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d~~i~i~ 186 (279)
.|.+|.++..-....... .......|.+.+.. ...+.+++++ ...+++|++++...|.+|
T Consensus 125 ~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v------------~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 125 DVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV------------GASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec------------CCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 999998753211000000 00011112111111 1246888988 777899999988888887
Q ss_pred ecCCC--cEEE-EeecCCcceEEEEEcCCC---c---EEEEecCCCeEEEEeC
Q 023643 187 DVESS--RIKM-VFKGHSDYLHCIVARNST---N---QIVTGSEDGTARIWDC 230 (279)
Q Consensus 187 d~~~~--~~~~-~~~~~~~~i~~i~~~~~~---~---~l~~~~~d~~i~vwd~ 230 (279)
-.... +... .-..+...|.+|+|-++. . ++++++-.|.+-+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 65432 1111 111255678899987742 2 7888999999999887
No 380
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.98 E-value=0.064 Score=39.05 Aligned_cols=104 Identities=12% Similarity=0.165 Sum_probs=67.5
Q ss_pred eEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCC
Q 023643 93 AYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG 172 (279)
Q Consensus 93 v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 172 (279)
-+.++|..+.+ .+.+.-+.+-+|.-||.+..... -.....++++... .+...+.+ -.+++..+|+
T Consensus 160 sNgl~Wd~d~K-~fY~iDsln~~V~a~dyd~~tG~-------~snr~~i~dlrk~---~~~e~~~P----DGm~ID~eG~ 224 (310)
T KOG4499|consen 160 SNGLAWDSDAK-KFYYIDSLNYEVDAYDYDCPTGD-------LSNRKVIFDLRKS---QPFESLEP----DGMTIDTEGN 224 (310)
T ss_pred CccccccccCc-EEEEEccCceEEeeeecCCCccc-------ccCcceeEEeccC---CCcCCCCC----CcceEccCCc
Confidence 45788887766 35566777888888885421110 0011122222221 11111111 2445577888
Q ss_pred eEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcC
Q 023643 173 AIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARN 211 (279)
Q Consensus 173 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~ 211 (279)
+.++.-+.++|...|..+|+.+.+++-....|++++|-.
T Consensus 225 L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 225 LYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred EEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 888888889999999999999999999999999999964
No 381
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.93 E-value=0.11 Score=39.25 Aligned_cols=206 Identities=14% Similarity=0.075 Sum_probs=115.9
Q ss_pred ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccC-CccCeEEEEecCC
Q 023643 23 ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHG-HDGPAYDVKFYGG 101 (279)
Q Consensus 23 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~ 101 (279)
+-...|.++.|+| +.+.|++..+...-.|+--.. ++.++++.- --.....+.+..+
T Consensus 83 g~~~nvS~LTynp----~~rtLFav~n~p~~iVElt~~-------------------GdlirtiPL~g~~DpE~Ieyig~ 139 (316)
T COG3204 83 GETANVSSLTYNP----DTRTLFAVTNKPAAIVELTKE-------------------GDLIRTIPLTGFSDPETIEYIGG 139 (316)
T ss_pred cccccccceeeCC----CcceEEEecCCCceEEEEecC-------------------CceEEEecccccCChhHeEEecC
Confidence 4455699999999 667676666666555554443 344443321 1122456777777
Q ss_pred CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCC
Q 023643 102 NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDS 181 (279)
Q Consensus 102 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 181 (279)
++ +.++--.++.+.++.+............ .-+ +....+ .+.....++|+|....|+.+-...
T Consensus 140 n~--fvi~dER~~~l~~~~vd~~t~~~~~~~~----~i~---L~~~~k--------~N~GfEGlA~d~~~~~l~~aKEr~ 202 (316)
T COG3204 140 NQ--FVIVDERDRALYLFTVDADTTVISAKVQ----KIP---LGTTNK--------KNKGFEGLAWDPVDHRLFVAKERN 202 (316)
T ss_pred CE--EEEEehhcceEEEEEEcCCccEEeccce----EEe---ccccCC--------CCcCceeeecCCCCceEEEEEccC
Confidence 76 7777778889988887643211111110 000 000000 012357899999999998888877
Q ss_pred eEEEEecCCCc-E--EEEeecCC-------cceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCceEEEecCCcc-ccccC
Q 023643 182 CAYCWDVESSR-I--KMVFKGHS-------DYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKD-KQLKG 249 (279)
Q Consensus 182 ~i~i~d~~~~~-~--~~~~~~~~-------~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~ 249 (279)
-+.||...... . +.....+. ..|.++.|++. +.+++-+.+++.+.-.|. .|..+..+..... ..+..
T Consensus 203 P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~-~G~~~~~lsL~~g~~gL~~ 281 (316)
T COG3204 203 PIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL-SGEVIELLSLTKGNHGLSS 281 (316)
T ss_pred CcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEec-CCCeeeeEEeccCCCCCcc
Confidence 77777765332 1 11111111 23567788874 667777778888887775 4554544432211 01111
Q ss_pred cceeeeEEEEcCCCCEEEEE
Q 023643 250 VISCVSCITLDASESWLVRV 269 (279)
Q Consensus 250 ~~~~v~~~~~~~~~~~l~~~ 269 (279)
.-..-.+++.+++|.+.+++
T Consensus 282 dipqaEGiamDd~g~lYIvS 301 (316)
T COG3204 282 DIPQAEGIAMDDDGNLYIVS 301 (316)
T ss_pred cCCCcceeEECCCCCEEEEe
Confidence 12234677888887755544
No 382
>PHA02713 hypothetical protein; Provisional
Probab=96.85 E-value=0.059 Score=45.80 Aligned_cols=68 Identities=6% Similarity=0.157 Sum_probs=41.6
Q ss_pred CCCeEEEecCC------CeEEEEecCC-C--cEEEEeecCCcceEEEEEcCCCcEEEEecCCC--eEEEEeCCCCceEEE
Q 023643 170 QGGAIFSAAGD------SCAYCWDVES-S--RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG--TARIWDCKSGKCIKV 238 (279)
Q Consensus 170 ~~~~l~~~~~d------~~i~i~d~~~-~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~--~i~vwd~~~~~~~~~ 238 (279)
++...+.|+.+ ..+..||..+ . ..+..+.........+.+ +++..++|+.++ .+..||..+.+....
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHI 540 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccch
Confidence 45566666643 2467899886 3 333344333333333333 678899999888 788888887765544
Q ss_pred e
Q 023643 239 I 239 (279)
Q Consensus 239 ~ 239 (279)
-
T Consensus 541 ~ 541 (557)
T PHA02713 541 C 541 (557)
T ss_pred h
Confidence 3
No 383
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.80 E-value=0.00053 Score=58.53 Aligned_cols=96 Identities=16% Similarity=0.176 Sum_probs=59.9
Q ss_pred Cceeeeccccccccceeeee-----ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccccee
Q 023643 3 GDSTNWDEDAYRKSILKERE-----ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQL 77 (279)
Q Consensus 3 G~v~iw~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 77 (279)
|...||+++--+-++...+. .-...+.-+.|+|.. .+..++..+-.+++|++.+.++.
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~-~~~~~ic~~~~~~~i~lL~~~ra---------------- 215 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIA-VNKVYICYGLKGGEIRLLNINRA---------------- 215 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccc-cccceeeeccCCCceeEeeechH----------------
Confidence 56678886532212222222 223445666777632 25577778889999999888863
Q ss_pred eeccccccccCCccCeEEEE-----------ecCCCCceEEEEeeCCCcEEEeec
Q 023643 78 LGIEPDGFLHGHDGPAYDVK-----------FYGGNEDALLLSCGDDGRICGWRW 121 (279)
Q Consensus 78 ~~~~~~~~~~~h~~~v~~~~-----------~~~~~~~~~l~s~~~dg~i~iw~~ 121 (279)
....+++|...+..++ .+|+|+ .|+.+..||.++.|.+
T Consensus 216 ----~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 216 ----LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQI 264 (1283)
T ss_pred ----HHHHHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeee
Confidence 1244556766655554 467777 8888888888888775
No 384
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.80 E-value=0.2 Score=40.31 Aligned_cols=98 Identities=15% Similarity=0.166 Sum_probs=54.5
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCC-----cE--E-EEeec----CCcceEEEEEcCCCcEEEEecCC-------
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESS-----RI--K-MVFKG----HSDYLHCIVARNSTNQIVTGSED------- 222 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----~~--~-~~~~~----~~~~i~~i~~~~~~~~l~~~~~d------- 222 (279)
.+.+++.+++ |+++......++.|.... +. + ..+.. +......++|.|+|.+.++-+..
T Consensus 74 p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~ 151 (367)
T TIGR02604 74 VTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTR 151 (367)
T ss_pred ccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceecc
Confidence 3688888887 555554443344455321 21 1 12322 13447789999999877655521
Q ss_pred ------------CeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643 223 ------------GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR 270 (279)
Q Consensus 223 ------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 270 (279)
|.|.-++...++. ..+. .++ .....++|+|+|+++++-.
T Consensus 152 ~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a-------~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 152 PGTSDESRQGLGGGLFRYNPDGGKL-RVVA-------HGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCccCcccccCceEEEEecCCCeE-EEEe-------cCc-CCCccceECCCCCEEEEcc
Confidence 3344455444332 2221 232 2346899999998877644
No 385
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.2 Score=42.88 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=32.2
Q ss_pred CCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee
Q 023643 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK 198 (279)
Q Consensus 160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 198 (279)
..+..+..+|+.++|+-=...|.|.+-+.+..+....+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 457788899999999988889999999888777766665
No 386
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.78 E-value=0.17 Score=39.35 Aligned_cols=169 Identities=14% Similarity=0.246 Sum_probs=92.1
Q ss_pred CCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeE-EEEecCCCCceEEEEeeCCCcEEEe
Q 023643 41 PDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAY-DVKFYGGNEDALLLSCGDDGRICGW 119 (279)
Q Consensus 41 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~l~s~~~dg~i~iw 119 (279)
+..+.+-+.||++.-..+....... .+....|..-.+++. .-.+...+. .++--+..|.|+--
T Consensus 147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~--------------~~~t~~F~~~~dp~f~~~~~~~~~~--~~~F~Sy~G~v~~~ 210 (342)
T PF06433_consen 147 NRGFSMLCGDGSLLTVTLDADGKEA--------------QKSTKVFDPDDDPLFEHPAYSRDGG--RLYFVSYEGNVYSA 210 (342)
T ss_dssp TTEEEEEETTSCEEEEEETSTSSEE--------------EEEEEESSTTTS-B-S--EEETTTT--EEEEEBTTSEEEEE
T ss_pred CCceEEEecCCceEEEEECCCCCEe--------------EeeccccCCCCcccccccceECCCC--eEEEEecCCEEEEE
Confidence 3568888999999988888532111 000112222222222 223333333 55556778888888
Q ss_pred ecCCCccCcceeeeccCcccceEEeec-CCCCCccccCCCCCCceeEEEcCCCCeEEEecC--------C--CeEEEEec
Q 023643 120 RWKEFTESKVPINLQGNHVKPVLDLVN-HQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG--------D--SCAYCWDV 188 (279)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--------d--~~i~i~d~ 188 (279)
|+.... ...... +.+.. .+....|.. +.-.-+++++..+.|++.-+ | ..|-++|+
T Consensus 211 dlsg~~-~~~~~~---------~~~~t~~e~~~~WrP----GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~ 276 (342)
T PF06433_consen 211 DLSGDS-AKFGKP---------WSLLTDAEKADGWRP----GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDL 276 (342)
T ss_dssp EETTSS-EEEEEE---------EESS-HHHHHTTEEE-----SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEET
T ss_pred eccCCc-ccccCc---------ccccCccccccCcCC----cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEEC
Confidence 765321 111000 00000 000001100 01245788877766666422 1 25788899
Q ss_pred CCCcEEEEeecCCcceEEEEEcCCCc-EEEE-ecCCCeEEEEeCCCCceEEEec
Q 023643 189 ESSRIKMVFKGHSDYLHCIVARNSTN-QIVT-GSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 189 ~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~-~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
.+++.+..+.. ..++.+|+.+.+.+ +|++ ...++.|.+||..+|+.+.++.
T Consensus 277 ~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 277 KTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp TTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred CCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 99999998873 34577899988754 5544 4568999999999999999885
No 387
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.77 E-value=0.26 Score=41.32 Aligned_cols=62 Identities=18% Similarity=0.196 Sum_probs=43.7
Q ss_pred CCCeEEEEecCCCcEEEEeecCCcc--------------------e-EEEEEcCCCcEEEEecCCC--------------
Q 023643 179 GDSCAYCWDVESSRIKMVFKGHSDY--------------------L-HCIVARNSTNQIVTGSEDG-------------- 223 (279)
Q Consensus 179 ~d~~i~i~d~~~~~~~~~~~~~~~~--------------------i-~~i~~~~~~~~l~~~~~d~-------------- 223 (279)
.++.+..+|..+++.+..++..... + ...++.+.+..++.++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence 3688999999999988877542110 1 1234444566777777665
Q ss_pred ----eEEEEeCCCCceEEEec
Q 023643 224 ----TARIWDCKSGKCIKVID 240 (279)
Q Consensus 224 ----~i~vwd~~~~~~~~~~~ 240 (279)
.|.-+|..+|+.+..++
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~ 273 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQ 273 (488)
T ss_pred CceeeEEEEcCCCCCEEEEee
Confidence 79999999999988874
No 388
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.75 E-value=0.11 Score=43.06 Aligned_cols=111 Identities=8% Similarity=0.083 Sum_probs=66.4
Q ss_pred ceeEEEcCC----CCeEEEecCCCeEEEEecCC-----CcEEEEeec-CCc----ceEEEEEcCCCcEEEEecCCCeEEE
Q 023643 162 NNAIAVDPQ----GGAIFSAAGDSCAYCWDVES-----SRIKMVFKG-HSD----YLHCIVARNSTNQIVTGSEDGTARI 227 (279)
Q Consensus 162 i~~~~~~~~----~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~-~~~----~i~~i~~~~~~~~l~~~~~d~~i~v 227 (279)
|..+.|.|- ...|++......|.+|-+.- ++.+..-.. ... -...+.|+|....|+.-.....=.+
T Consensus 59 V~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~ 138 (671)
T PF15390_consen 59 VHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVL 138 (671)
T ss_pred eeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEe
Confidence 688999984 33555566788999998852 232222111 111 1245679998877766555444445
Q ss_pred EeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEc-CcceEEeCC
Q 023643 228 WDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR-ATNYVILFS 279 (279)
Q Consensus 228 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd 279 (279)
++++.....-..+ ....+.|.|.+|.+||+.|+.+- ..=.-++||
T Consensus 139 ~sV~~d~srVkaD-------i~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 139 PSVHCDSSRVKAD-------IKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred eeeeeCCceEEEe-------ccCCceEEEEEecCcCCEEEEEeCCeEEEEEec
Confidence 5655433222221 13346799999999999887663 333456776
No 389
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.74 E-value=0.086 Score=44.78 Aligned_cols=109 Identities=13% Similarity=0.051 Sum_probs=70.1
Q ss_pred eeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee-cCCcceEEEEEc--CCCcEEEEecCCCeEEEEeCC--------
Q 023643 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK-GHSDYLHCIVAR--NSTNQIVTGSEDGTARIWDCK-------- 231 (279)
Q Consensus 163 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~--~~~~~l~~~~~d~~i~vwd~~-------- 231 (279)
.-+.-+.-++.-++-+....+.|||.+.+....+-. ...+.|.++.|. |+++.+++.+..+.|.+|--.
T Consensus 33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~ 112 (631)
T PF12234_consen 33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG 112 (631)
T ss_pred ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence 344444444444444445679999999887544332 356789999886 478999999999999998532
Q ss_pred -CCceEEEecCCccccccCcc-eeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 232 -SGKCIKVIDPVKDKQLKGVI-SCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 232 -~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+-..+..+.. ..++ .+|....|.++|..++.++ +.+.++|
T Consensus 113 p~w~~i~~i~i------~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 113 PSWAPIRKIDI------SSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred cccceeEEEEe------ecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence 1123333321 3333 5788999999998666553 4455553
No 390
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.69 E-value=0.14 Score=42.50 Aligned_cols=122 Identities=16% Similarity=0.245 Sum_probs=72.4
Q ss_pred cCeEEEEecCCCCc--eEEEEeeCCCcEEEeecCCCcc--CcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEE
Q 023643 91 GPAYDVKFYGGNED--ALLLSCGDDGRICGWRWKEFTE--SKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIA 166 (279)
Q Consensus 91 ~~v~~~~~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 166 (279)
..|..++|.|-+.. ..|++......|.+|.+..... .+.......+...+ +... -..+.
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~------------~pvL-----pQGCV 119 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREP------------FPVL-----PQGCV 119 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCC------------cccC-----CCccc
Confidence 45899999986321 1466666778999999853211 11111111111000 0000 14667
Q ss_pred EcCCCCeEEEecCCCeEEEEecCC--CcEEEEeecCCcceEEEEEcCCCcEEEEe-cCCCeEEEEeC
Q 023643 167 VDPQGGAIFSAAGDSCAYCWDVES--SRIKMVFKGHSDYLHCIVARNSTNQIVTG-SEDGTARIWDC 230 (279)
Q Consensus 167 ~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~vwd~ 230 (279)
|+|....|++-+....-.+++++. .+....++ ..+.|.|.+|.+||+.|+.+ +..=.-++||-
T Consensus 120 WHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 120 WHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred ccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 999988887766655555666543 33444454 56889999999999876654 33444678884
No 391
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.68 E-value=0.013 Score=30.01 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=26.8
Q ss_pred cceEEEEEcCC-C--cEEEEecCCCeEEEEeCCCC
Q 023643 202 DYLHCIVARNS-T--NQIVTGSEDGTARIWDCKSG 233 (279)
Q Consensus 202 ~~i~~i~~~~~-~--~~l~~~~~d~~i~vwd~~~~ 233 (279)
+.++++.|+|. + .+|+.+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 46899999985 3 58888888999999999963
No 392
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.68 E-value=0.2 Score=38.73 Aligned_cols=111 Identities=9% Similarity=-0.000 Sum_probs=59.9
Q ss_pred CCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEe
Q 023643 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239 (279)
Q Consensus 160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 239 (279)
..+..+..++++.+++++..-....-||.-...-...-+.-...|..|.|.|++...+.+ ..|.|++=+.. .....+
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~--~~~~~w 221 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDP--DDGETW 221 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-T--TEEEEE
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCC--CCcccc
Confidence 457788889999999888766666778764322222222346789999999998776655 88888887621 122222
Q ss_pred cCCccccccCcceeeeEEEEcCCCCEEEEEcCcce
Q 023643 240 DPVKDKQLKGVISCVSCITLDASESWLVRVRATNY 274 (279)
Q Consensus 240 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 274 (279)
..+. ..+....-.+..++|.+++...|+|+....
T Consensus 222 ~~~~-~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l 255 (302)
T PF14870_consen 222 SEPI-IPIKTNGYGILDLAYRPPNEIWAVGGSGTL 255 (302)
T ss_dssp ---B--TTSS--S-EEEEEESSSS-EEEEESTT-E
T ss_pred cccc-CCcccCceeeEEEEecCCCCEEEEeCCccE
Confidence 1110 000122335789999999888887766543
No 393
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.66 E-value=0.18 Score=37.86 Aligned_cols=199 Identities=11% Similarity=0.019 Sum_probs=111.5
Q ss_pred ceeeeeecc-cceEEEEECCCCCCCCCEEEEecCCC--cEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCe
Q 023643 17 ILKEREILT-RTVFRTVWGPSKDGSPDTIVIASSDG--SITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPA 93 (279)
Q Consensus 17 ~~~~~~~~~-~~v~~~~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 93 (279)
++++++... .-...+.|.. ++.++-+.+.-| .|+.+|+.+++.... ..+. ..-.-
T Consensus 35 vv~~ypHd~~aFTQGL~~~~----~g~LyESTG~yG~S~l~~~d~~tg~~~~~-----------------~~l~-~~~Fg 92 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLD----DGTLYESTGLYGQSSLRKVDLETGKVLQS-----------------VPLP-PRYFG 92 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEE----TTEEEEEECSTTEEEEEEEETTTSSEEEE-----------------EE-T-TT--E
T ss_pred EEEECCCCCcccCccEEecC----CCEEEEeCCCCCcEEEEEEECCCCcEEEE-----------------EECC-ccccc
Confidence 344444222 2345677866 688888877666 789999998532111 1111 11223
Q ss_pred EEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCe
Q 023643 94 YDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGA 173 (279)
Q Consensus 94 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 173 (279)
..++...+. ...-.=.++...+||.++.+... ...+.+. =..++ .++..
T Consensus 93 EGit~~~d~---l~qLTWk~~~~f~yd~~tl~~~~-~~~y~~E-------------------------GWGLt--~dg~~ 141 (264)
T PF05096_consen 93 EGITILGDK---LYQLTWKEGTGFVYDPNTLKKIG-TFPYPGE-------------------------GWGLT--SDGKR 141 (264)
T ss_dssp EEEEEETTE---EEEEESSSSEEEEEETTTTEEEE-EEE-SSS---------------------------EEE--ECSSC
T ss_pred eeEEEECCE---EEEEEecCCeEEEEccccceEEE-EEecCCc-------------------------ceEEE--cCCCE
Confidence 344444332 44444567888899976542211 1111110 14455 46777
Q ss_pred EEEecCCCeEEEEecCCCcEEEEeecCC-----cceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCcccc--
Q 023643 174 IFSAAGDSCAYCWDVESSRIKMVFKGHS-----DYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQ-- 246 (279)
Q Consensus 174 l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-- 246 (279)
|+.......|+++|..+.+.++.+.-.. ..+..+.+- +|...|-.=....|...|..+|+....+.......
T Consensus 142 Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~ 220 (264)
T PF05096_consen 142 LIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEV 220 (264)
T ss_dssp EEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHH
T ss_pred EEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcc
Confidence 8888778899999999888777665321 245566675 67777777778888889999999988875432100
Q ss_pred -----ccCcceeeeEEEEcCCCC-EEEEE
Q 023643 247 -----LKGVISCVSCITLDASES-WLVRV 269 (279)
Q Consensus 247 -----~~~~~~~v~~~~~~~~~~-~l~~~ 269 (279)
......-.+.||++|... +++||
T Consensus 221 ~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 221 GRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred cccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 011135689999998654 55565
No 394
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.65 E-value=0.16 Score=43.30 Aligned_cols=115 Identities=14% Similarity=0.202 Sum_probs=65.4
Q ss_pred CCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEee
Q 023643 41 PDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWR 120 (279)
Q Consensus 41 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~ 120 (279)
+..-++-+...++.|||..... .+....+ ...+.|..+.|.....++.+++.|....|.++.
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~-----------------lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGV-----------------LEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcE-----------------EEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 3444444445579999998743 1122233 356789999997654444899999999999987
Q ss_pred cCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEec
Q 023643 121 WKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDV 188 (279)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 188 (279)
-.... ....+..-.++..+.-..+.. .+|.+..|.++|..++.++ ..+.++|-
T Consensus 103 Q~R~d-----y~~~~p~w~~i~~i~i~~~T~--------h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 103 QLRYD-----YTNKGPSWAPIRKIDISSHTP--------HPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred ccchh-----hhcCCcccceeEEEEeecCCC--------CCccceeEecCCeEEEEeC--CEEEEECC
Confidence 42110 000111112232222221111 1378889999886555443 56888774
No 395
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.62 E-value=0.014 Score=29.90 Aligned_cols=31 Identities=16% Similarity=0.115 Sum_probs=25.7
Q ss_pred CceeEEEcCCCC---eEEEecCCCeEEEEecCCC
Q 023643 161 ENNAIAVDPQGG---AIFSAAGDSCAYCWDVESS 191 (279)
Q Consensus 161 ~i~~~~~~~~~~---~l~~~~~d~~i~i~d~~~~ 191 (279)
+++++.|+|... +|+.+-.-+.|.++|+++.
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 478999998544 8888888899999999953
No 396
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.027 Score=50.00 Aligned_cols=154 Identities=8% Similarity=-0.007 Sum_probs=90.4
Q ss_pred cceEEEEECCCCCCCCCEEEEe--cCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643 26 RTVFRTVWGPSKDGSPDTIVIA--SSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE 103 (279)
Q Consensus 26 ~~v~~~~~~~~~~~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 103 (279)
-++..+...+ |+...++. +.+-.|..||+.+-.........+ ....++.........++.|+|.-.
T Consensus 101 ~pi~~~v~~~----D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~p--------l~~s~ts~ek~vf~~~~~wnP~vp 168 (1405)
T KOG3630|consen 101 IPIVIFVCFH----DATDSVVVSTSNGEAVYSFDLEEFSESRYETTVP--------LKNSATSFEKPVFQLKNVWNPLVP 168 (1405)
T ss_pred ccceEEEecc----CCceEEEEEecCCceEEEEehHhhhhhhhhhccc--------cccccchhccccccccccccCCcc
Confidence 3455566666 65555443 333478899987632211100000 000111112234466788998765
Q ss_pred ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeE
Q 023643 104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCA 183 (279)
Q Consensus 104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 183 (279)
...+.+..|+.|++..+...........+. ...++++|+|.|+.+++|...|++
T Consensus 169 -~n~av~l~dlsl~V~~~~~~~~~v~s~p~t-------------------------~~~Tav~WSprGKQl~iG~nnGt~ 222 (1405)
T KOG3630|consen 169 -LNSAVDLSDLSLRVKSTKQLAQNVTSFPVT-------------------------NSQTAVLWSPRGKQLFIGRNNGTE 222 (1405)
T ss_pred -chhhhhccccchhhhhhhhhhhhhcccCcc-------------------------cceeeEEeccccceeeEecCCCeE
Confidence 356777889999988865321111110000 126899999999999999999999
Q ss_pred EEEecCCCcEEEEeecC----CcceEEEEEcCCCcEEEE
Q 023643 184 YCWDVESSRIKMVFKGH----SDYLHCIVARNSTNQIVT 218 (279)
Q Consensus 184 ~i~d~~~~~~~~~~~~~----~~~i~~i~~~~~~~~l~~ 218 (279)
.-|-.. .+.+..+.+. ...|.+|+|-....++++
T Consensus 223 vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 223 VQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred EEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 999764 4444444321 367999999876666554
No 397
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.61 E-value=0.2 Score=37.86 Aligned_cols=109 Identities=11% Similarity=0.060 Sum_probs=63.2
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEe-cCCCcEEE-Eeec--CCcceEEEEEcCCCcEEEEec---CCCeEEEEeCC---
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWD-VESSRIKM-VFKG--HSDYLHCIVARNSTNQIVTGS---EDGTARIWDCK--- 231 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d-~~~~~~~~-~~~~--~~~~i~~i~~~~~~~~l~~~~---~d~~i~vwd~~--- 231 (279)
+..-.|++++...++...+...+++. ..++.... .... -...|..+.++|||..++... .++.|.+=-+.
T Consensus 68 l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~ 147 (253)
T PF10647_consen 68 LTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDG 147 (253)
T ss_pred cccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCC
Confidence 46678999977666666666666663 33332222 1211 112899999999998876655 35777766443
Q ss_pred CCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643 232 SGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT 272 (279)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 272 (279)
.+.......+.. ........+..++|.+++.+++.+...
T Consensus 148 ~g~~~~l~~~~~--~~~~~~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 148 DGVPRRLTGPRR--VAPPLLSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred CCCcceeccceE--ecccccCcceeeeecCCCEEEEEeCCC
Confidence 221111111100 001234578999999999887766543
No 398
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.59 E-value=0.2 Score=43.17 Aligned_cols=113 Identities=10% Similarity=0.044 Sum_probs=73.1
Q ss_pred CceeEEEcC--CCCeEEEecCCCeEEEEecCC-------C-------------cEEEEeecCCcceEEEEEc--CCCcEE
Q 023643 161 ENNAIAVDP--QGGAIFSAAGDSCAYCWDVES-------S-------------RIKMVFKGHSDYLHCIVAR--NSTNQI 216 (279)
Q Consensus 161 ~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~~-------~-------------~~~~~~~~~~~~i~~i~~~--~~~~~l 216 (279)
.|+.+.... ....|+.+..||.|.+|.+++ . ++...+. -....+.++++ ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence 466665543 445788899999999997631 0 0112222 23467899998 778889
Q ss_pred EEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCC-----C-EEEEEcCcceEEeCC
Q 023643 217 VTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASE-----S-WLVRVRATNYVILFS 279 (279)
Q Consensus 217 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~-~l~~~~~d~~i~~wd 279 (279)
|+++....|.||-............ + ..+...|.+|+|-++. . .|++++-.|.+.+|+
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~-s----~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVP-S----HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred EEecCCceEEEEEEecccccccccc-c----cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 9998888888886654311111110 0 2355678999997643 2 788888889887763
No 399
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.55 E-value=0.22 Score=37.56 Aligned_cols=175 Identities=17% Similarity=0.261 Sum_probs=93.6
Q ss_pred EECCCCCCCCCEEEEecCC-----CcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceE
Q 023643 32 VWGPSKDGSPDTIVIASSD-----GSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDAL 106 (279)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 106 (279)
.||| ||.+|.+.-+| |.|-|||.... ...+..+..|.-....+.|.+++. .
T Consensus 120 vfs~----dG~~LYATEndfd~~rGViGvYd~r~~------------------fqrvgE~~t~GiGpHev~lm~DGr--t 175 (366)
T COG3490 120 VFSP----DGRLLYATENDFDPNRGVIGVYDAREG------------------FQRVGEFSTHGIGPHEVTLMADGR--T 175 (366)
T ss_pred ccCC----CCcEEEeecCCCCCCCceEEEEecccc------------------cceecccccCCcCcceeEEecCCc--E
Confidence 5888 89998776443 67999999864 556667777777778899999997 6
Q ss_pred EEEeeCCCcEEEe-ecCCCccCcceeeeccCcccceEEeecCCC-----CCccccCCCCCCceeEEEcCCCCeEEEecCC
Q 023643 107 LLSCGDDGRICGW-RWKEFTESKVPINLQGNHVKPVLDLVNHQH-----KGPWGALSPVPENNAIAVDPQGGAIFSAAGD 180 (279)
Q Consensus 107 l~s~~~dg~i~iw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 180 (279)
++.+. |-|... |... ....+ ...+|-+.+..... +.......+.-.|+.++..+++...+.+-..
T Consensus 176 lvvan--GGIethpdfgR-----~~lNl--dsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~ 246 (366)
T COG3490 176 LVVAN--GGIETHPDFGR-----TELNL--DSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYR 246 (366)
T ss_pred EEEeC--CceecccccCc-----cccch--hhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEee
Confidence 66553 445544 2211 00000 01111111111000 0001111122246777777777655543222
Q ss_pred Ce-----EEEEecCCCcEEEEee-------cCCcceEEEEEcCCCcEE-EEecCCCeEEEEeCCCCceEEEe
Q 023643 181 SC-----AYCWDVESSRIKMVFK-------GHSDYLHCIVARNSTNQI-VTGSEDGTARIWDCKSGKCIKVI 239 (279)
Q Consensus 181 ~~-----i~i~d~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd~~~~~~~~~~ 239 (279)
|. -.+=-...++++.-+. .....|-+|+.+.+..++ +++-..+...+||..+|..+..-
T Consensus 247 G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a 318 (366)
T COG3490 247 GPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEA 318 (366)
T ss_pred CCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecc
Confidence 11 1111112233333222 123467788887654554 44445566789999999877654
No 400
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.53 E-value=0.083 Score=43.20 Aligned_cols=101 Identities=8% Similarity=0.020 Sum_probs=62.2
Q ss_pred ceeEEEcCCCCeEEEe-cC----CCeEEEEecCCCcEEEEe-ecCCcceEEEEEcCCCcEEEEecCC-----------Ce
Q 023643 162 NNAIAVDPQGGAIFSA-AG----DSCAYCWDVESSRIKMVF-KGHSDYLHCIVARNSTNQIVTGSED-----------GT 224 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~-~~----d~~i~i~d~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~d-----------~~ 224 (279)
+....++|++++++.+ +. ...++++|+.+++.+... ... .-..+.|.++++.|+....+ ..
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 3467899999987754 22 245999999999776532 221 12349999997776554432 23
Q ss_pred EEEEeCCCCceE--EEecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643 225 ARIWDCKSGKCI--KVIDPVKDKQLKGVISCVSCITLDASESWLVRVR 270 (279)
Q Consensus 225 i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 270 (279)
|+.|++.+.... ..+.. .........+..++|+++|+..+
T Consensus 204 v~~~~~gt~~~~d~lvfe~------~~~~~~~~~~~~s~d~~~l~i~~ 245 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEE------PDEPFWFVSVSRSKDGRYLFISS 245 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-------TTCTTSEEEEEE-TTSSEEEEEE
T ss_pred EEEEECCCChHhCeeEEee------cCCCcEEEEEEecCcccEEEEEE
Confidence 788888776433 33322 12222255788899999887543
No 401
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=96.50 E-value=0.19 Score=36.29 Aligned_cols=162 Identities=15% Similarity=0.194 Sum_probs=82.6
Q ss_pred CEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCC------c
Q 023643 42 DTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDG------R 115 (279)
Q Consensus 42 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg------~ 115 (279)
+.|+.+...+.|.+|++...+ .++...|..- +.|..+.++..|+ +|+|-=.+. .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~-----------------~~~~~~F~Tv-~~V~~l~y~~~GD--YlvTlE~k~~~~~~~f 88 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEE-----------------CPLLCTFSTV-GRVLQLVYSEAGD--YLVTLEEKNKRSPVDF 88 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCC-----------------CceeEEEcch-hheeEEEeccccc--eEEEEEeecCCccceE
Confidence 455454666789999998432 3444455433 7899999999998 999864332 4
Q ss_pred EEEe-ecCCC--ccCcceeeeccCcccceEEeecCCCCC--ccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCC
Q 023643 116 ICGW-RWKEF--TESKVPINLQGNHVKPVLDLVNHQHKG--PWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVES 190 (279)
Q Consensus 116 i~iw-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 190 (279)
+|+| +++.. ..........|+...+. ....... .+-.+.....+.+++..|-..-|++|+ ++++.+|.+..
T Consensus 89 vR~Y~NWr~~~~~~~~v~vRiaG~~v~~~---~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~ 164 (215)
T PF14761_consen 89 VRAYFNWRSQKEENSPVRVRIAGHRVTPS---FNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKY 164 (215)
T ss_pred EEEEEEhhhhcccCCcEEEEEcccccccC---CCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEE
Confidence 5543 22221 11111112222111100 0000000 000111223468999988655666666 47789998764
Q ss_pred CcE-EE-----Eee-----cCCc-ceEEEEEcCCCcEEEEecCCCeEEEEeC
Q 023643 191 SRI-KM-----VFK-----GHSD-YLHCIVARNSTNQIVTGSEDGTARIWDC 230 (279)
Q Consensus 191 ~~~-~~-----~~~-----~~~~-~i~~i~~~~~~~~l~~~~~d~~i~vwd~ 230 (279)
... .. .|. .|.+ .+..+++. +.|+|..+ +-.++++.+
T Consensus 165 ~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 165 QTIQSEKFSFLDFERSLIDHIDNFKPTQVAIC--EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred EEEecccccEEechhhhhheecCceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence 433 11 111 1111 23455554 56776655 445666554
No 402
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.47 E-value=0.21 Score=36.51 Aligned_cols=91 Identities=13% Similarity=0.119 Sum_probs=63.3
Q ss_pred eeEEEcCCCCeEE-EecCCCeEEEEe--cCCCc-----EEEEeecC---C-cceEEEEEcCCCcEEEEecCCCeEEEEeC
Q 023643 163 NAIAVDPQGGAIF-SAAGDSCAYCWD--VESSR-----IKMVFKGH---S-DYLHCIVARNSTNQIVTGSEDGTARIWDC 230 (279)
Q Consensus 163 ~~~~~~~~~~~l~-~~~~d~~i~i~d--~~~~~-----~~~~~~~~---~-~~i~~i~~~~~~~~l~~~~~d~~i~vwd~ 230 (279)
+.++|+.+.+.++ +-+.+-.|.-|| ..+|. .+..++.. . -..-.++...+|++.++.-..++|...|+
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 5788988777654 455677787777 55543 23333211 1 11234556678899888888999999999
Q ss_pred CCCceEEEecCCccccccCcceeeeEEEEcC
Q 023643 231 KSGKCIKVIDPVKDKQLKGVISCVSCITLDA 261 (279)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 261 (279)
.+|+.+..+. -....|+++||--
T Consensus 241 ~tGK~L~eik--------lPt~qitsccFgG 263 (310)
T KOG4499|consen 241 TTGKILLEIK--------LPTPQITSCCFGG 263 (310)
T ss_pred CCCcEEEEEE--------cCCCceEEEEecC
Confidence 9999999984 4456799999964
No 403
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.46 E-value=0.27 Score=37.56 Aligned_cols=211 Identities=16% Similarity=0.215 Sum_probs=118.2
Q ss_pred cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccccccc-----CCccCeEEEEecC
Q 023643 26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLH-----GHDGPAYDVKFYG 100 (279)
Q Consensus 26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~ 100 (279)
..-+.|+++| .+.+-++....+...+||.+...+... . ...+-++. ......+.+.|+.
T Consensus 23 ~N~WGia~~p----~~~~WVadngT~~~TlYdg~~~~~~g~--------~----~~L~vtiP~~~~~~~~~~PTGiVfN~ 86 (336)
T TIGR03118 23 RNAWGLSYRP----GGPFWVANTGTGTATLYVGNPDTQPLV--------Q----DPLVVVIPAPPPLAAEGTPTGQVFNG 86 (336)
T ss_pred cccceeEecC----CCCEEEecCCcceEEeecCCcccccCC--------c----cceEEEecCCCCCCCCCCccEEEEeC
Confidence 3457899999 788888888889999999973211100 0 00011111 1123456666664
Q ss_pred CCC----------ceEEEEeeCCCcEEEeecCCCccC--cceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEc
Q 023643 101 GNE----------DALLLSCGDDGRICGWRWKEFTES--KVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVD 168 (279)
Q Consensus 101 ~~~----------~~~l~s~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 168 (279)
... ...++.+++||+|.-|...-.... .....+.......++ ..+++.
T Consensus 87 ~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavY--------------------kGLAi~ 146 (336)
T TIGR03118 87 SDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVY--------------------KGLAVG 146 (336)
T ss_pred CCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCccee--------------------eeeEEe
Confidence 322 024788899999999996433221 111222221122222 244444
Q ss_pred --CCCCeEEEe-cCCCeEEEEecCCCcEEE--EeecC----------------CcceEEEEEcCCCcEEEEecCCCeEEE
Q 023643 169 --PQGGAIFSA-AGDSCAYCWDVESSRIKM--VFKGH----------------SDYLHCIVARNSTNQIVTGSEDGTARI 227 (279)
Q Consensus 169 --~~~~~l~~~-~~d~~i~i~d~~~~~~~~--~~~~~----------------~~~i~~i~~~~~~~~l~~~~~d~~i~v 227 (279)
..+.+|+.+ -..++|.+||-.-.+... .|... .-.|+-..-.++++.=+.|..-|.|-+
T Consensus 147 ~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~Vdv 226 (336)
T TIGR03118 147 PTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNV 226 (336)
T ss_pred ecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEE
Confidence 335566554 457899999865322210 11100 001222222333444455666789999
Q ss_pred EeCCCCceEEEecCCccccccCcceeeeEEEEcC------CCCEEEEEcCcceEEeCC
Q 023643 228 WDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDA------SESWLVRVRATNYVILFS 279 (279)
Q Consensus 228 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~~~~~d~~i~~wd 279 (279)
||+ .|+.++++.. .+.-..-+.|+..| .+.+|+---.||+|..||
T Consensus 227 Fd~-~G~l~~r~as------~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD 277 (336)
T TIGR03118 227 FTL-NGQLLRRVAS------SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYD 277 (336)
T ss_pred EcC-CCcEEEEecc------CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEec
Confidence 996 6888888743 34455667888766 467777777799999887
No 404
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.44 E-value=0.15 Score=44.53 Aligned_cols=74 Identities=14% Similarity=0.091 Sum_probs=52.1
Q ss_pred CCceeEEEcCCCCeEEEecCCCeEEEEecCC---------CcE---EEEe--------ecCCcceEEEEEcCC---CcEE
Q 023643 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVES---------SRI---KMVF--------KGHSDYLHCIVARNS---TNQI 216 (279)
Q Consensus 160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~---------~~~---~~~~--------~~~~~~i~~i~~~~~---~~~l 216 (279)
-.|..|.++|+|.+++..+..|...+.=.+. ++. .+++ ..+...|..+.|+|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 3589999999999999888766544432221 111 1111 123457899999995 5889
Q ss_pred EEecCCCeEEEEeCCCC
Q 023643 217 VTGSEDGTARIWDCKSG 233 (279)
Q Consensus 217 ~~~~~d~~i~vwd~~~~ 233 (279)
+.-..|+++|+||+...
T Consensus 165 ~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEecCCEEEEEecCCC
Confidence 99999999999999753
No 405
>PHA03098 kelch-like protein; Provisional
Probab=96.44 E-value=0.39 Score=40.84 Aligned_cols=66 Identities=8% Similarity=0.053 Sum_probs=34.8
Q ss_pred CCCeEEEecCC------CeEEEEecCCCcEEE--EeecCCcceEEEEEcCCCcEEEEecCCC--------eEEEEeCCCC
Q 023643 170 QGGAIFSAAGD------SCAYCWDVESSRIKM--VFKGHSDYLHCIVARNSTNQIVTGSEDG--------TARIWDCKSG 233 (279)
Q Consensus 170 ~~~~l~~~~~d------~~i~i~d~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~d~--------~i~vwd~~~~ 233 (279)
++..++.|+.+ ..+..||+.+.+-.. .+....... +++ ..++..++.|+.++ .+.+||..++
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 45555666532 458889987654322 111111111 222 23566777776432 3888998877
Q ss_pred ceEE
Q 023643 234 KCIK 237 (279)
Q Consensus 234 ~~~~ 237 (279)
+...
T Consensus 467 ~W~~ 470 (534)
T PHA03098 467 KWTE 470 (534)
T ss_pred ceee
Confidence 6543
No 406
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.39 E-value=0.6 Score=40.91 Aligned_cols=102 Identities=10% Similarity=0.113 Sum_probs=56.9
Q ss_pred cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCC-CCcccccccCCcccc-eeeeccccccccCCccCeEEEEecCCCC
Q 023643 26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPS-CISKLPLGLSNSKVQ-QLLGIEPDGFLHGHDGPAYDVKFYGGNE 103 (279)
Q Consensus 26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 103 (279)
-.|..+..+| +|.+||..+..|. .|-.+.. ......+.-...... .............+...|..+.|+|.+.
T Consensus 85 f~v~~i~~n~----~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~ 159 (717)
T PF10168_consen 85 FEVHQISLNP----TGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSE 159 (717)
T ss_pred eeEEEEEECC----CCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCC
Confidence 4688888999 8999999888764 4444432 111100100000000 0000000011123456799999999751
Q ss_pred -ceEEEEeeCCCcEEEeecCCCccCcceee
Q 023643 104 -DALLLSCGDDGRICGWRWKEFTESKVPIN 132 (279)
Q Consensus 104 -~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 132 (279)
+..|+.-..|+++|+||+...........
T Consensus 160 ~~~~l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 160 SDSHLVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred CCCeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence 23888888999999999975444333333
No 407
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.38 E-value=0.15 Score=38.63 Aligned_cols=117 Identities=9% Similarity=0.085 Sum_probs=78.7
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecC-CcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGH-SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
+.++.|+|+.+.|++..+...-.++=..+|+.++++.-. -...-.|.+..++++.++-=.++.+.++.+........+.
T Consensus 88 vS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~ 167 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAK 167 (316)
T ss_pred ccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEecc
Confidence 689999999999998888777777766779999887521 1223467787788888887788888888776553322222
Q ss_pred CCc-c-ccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 241 PVK-D-KQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 241 ~~~-~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
... . ......+....+++|+|..+.|..+-+-.-+.+|
T Consensus 168 ~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~ 207 (316)
T COG3204 168 VQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIF 207 (316)
T ss_pred ceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEE
Confidence 100 0 0001225677899999988888777655544443
No 408
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.35 E-value=0.34 Score=37.52 Aligned_cols=155 Identities=12% Similarity=0.050 Sum_probs=74.7
Q ss_pred ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED 104 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 104 (279)
.+.+..+..++ ++.+++++..-....-|+..... .++ .-+.-..+|..+.|.|++.
T Consensus 144 ~gs~~~~~r~~----dG~~vavs~~G~~~~s~~~G~~~-----------------w~~--~~r~~~~riq~~gf~~~~~- 199 (302)
T PF14870_consen 144 SGSINDITRSS----DGRYVAVSSRGNFYSSWDPGQTT-----------------WQP--HNRNSSRRIQSMGFSPDGN- 199 (302)
T ss_dssp ---EEEEEE-T----TS-EEEEETTSSEEEEE-TT-SS------------------EE--EE--SSS-EEEEEE-TTS--
T ss_pred cceeEeEEECC----CCcEEEEECcccEEEEecCCCcc-----------------ceE--EccCccceehhceecCCCC-
Confidence 46688888888 89999888776666677765310 111 1122356799999999975
Q ss_pred eEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEE
Q 023643 105 ALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAY 184 (279)
Q Consensus 105 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 184 (279)
+.+ ....|.|+.=+.... ...... ...+ .......+..++|.+++...++|+. |.+
T Consensus 200 -lw~-~~~Gg~~~~s~~~~~-----~~~w~~-~~~~--------------~~~~~~~~ld~a~~~~~~~wa~gg~-G~l- 255 (302)
T PF14870_consen 200 -LWM-LARGGQIQFSDDPDD-----GETWSE-PIIP--------------IKTNGYGILDLAYRPPNEIWAVGGS-GTL- 255 (302)
T ss_dssp -EEE-EETTTEEEEEE-TTE-----EEEE----B-T--------------TSS--S-EEEEEESSSS-EEEEEST-T-E-
T ss_pred -EEE-EeCCcEEEEccCCCC-----cccccc-ccCC--------------cccCceeeEEEEecCCCCEEEEeCC-ccE-
Confidence 444 448888887661110 000000 0000 0000012678899988777776654 433
Q ss_pred EEecCCCcEEEEe---ecCCcceEEEEEcCCCcEEEEecCCCeEEEE
Q 023643 185 CWDVESSRIKMVF---KGHSDYLHCIVARNSTNQIVTGSEDGTARIW 228 (279)
Q Consensus 185 i~d~~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vw 228 (279)
+...+.|+.=..- ..-...++.|.|.++.+-++.| .+|.|--|
T Consensus 256 ~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 256 LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 3344444433322 2234567888887665555554 67776544
No 409
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.14 E-value=0.11 Score=42.07 Aligned_cols=81 Identities=15% Similarity=0.249 Sum_probs=58.8
Q ss_pred CCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEE----EEEcCC--------------Cc-EEEEec
Q 023643 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHC----IVARNS--------------TN-QIVTGS 220 (279)
Q Consensus 160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~----i~~~~~--------------~~-~l~~~~ 220 (279)
..+.++..+|.+++.++..+-|.|.++|+.++..++.+++..+.=.. ..-... .. +++-+-
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 35789999999998888888899999999999999988876543111 111000 11 234456
Q ss_pred CCCeEEEEeCCCCceEEEec
Q 023643 221 EDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 221 ~d~~i~vwd~~~~~~~~~~~ 240 (279)
.-|.|.||.+++|..+..+.
T Consensus 388 rRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 388 RRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred cCCeEEEEecCCCCEEEEEE
Confidence 68889999999998888774
No 410
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.79 E-value=0.76 Score=36.67 Aligned_cols=113 Identities=13% Similarity=0.207 Sum_probs=50.6
Q ss_pred eEEEcCCCCeEEE-----ecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCC---------------
Q 023643 164 AIAVDPQGGAIFS-----AAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG--------------- 223 (279)
Q Consensus 164 ~~~~~~~~~~l~~-----~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~--------------- 223 (279)
-=-|.|+|..+.- ++.+..|.-+|+.+++....... .+....-.+++|++++-=+.|.
T Consensus 242 HEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~ 319 (386)
T PF14583_consen 242 HEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIEND 319 (386)
T ss_dssp EEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE------------------
T ss_pred cccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCC
Confidence 3358888885543 23355688889888765443221 2334555667888876544332
Q ss_pred -eEEEEeCCCCceEEEecCCcc-ccccCcce-eeeEEEEcCCCCEEE-EEcCcceEEeC
Q 023643 224 -TARIWDCKSGKCIKVIDPVKD-KQLKGVIS-CVSCITLDASESWLV-RVRATNYVILF 278 (279)
Q Consensus 224 -~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~-~v~~~~~~~~~~~l~-~~~~d~~i~~w 278 (279)
.|+++++..++.......... ..+.++.. .=....|+||+++++ ++...|...||
T Consensus 320 p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 320 PWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp -EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred cEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 466788876654322111000 00011110 114578999999766 55556765554
No 411
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.70 E-value=1.2 Score=38.22 Aligned_cols=66 Identities=14% Similarity=0.154 Sum_probs=38.3
Q ss_pred CCCeEEEecCCC-----eEEEEecCCCc--EEEEeecCCcceEEEEEcCCCcEEEEecCCC------eEEEEeCCCCceE
Q 023643 170 QGGAIFSAAGDS-----CAYCWDVESSR--IKMVFKGHSDYLHCIVARNSTNQIVTGSEDG------TARIWDCKSGKCI 236 (279)
Q Consensus 170 ~~~~l~~~~~d~-----~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~------~i~vwd~~~~~~~ 236 (279)
+|...++|+.|| ++-.||..+.+ .+..+.......-.+. -+|...++|+.++ ++..||..+++..
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~ 457 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNTWT 457 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence 566778888875 46778877643 2222221111111122 2578888888554 4778888877654
Q ss_pred E
Q 023643 237 K 237 (279)
Q Consensus 237 ~ 237 (279)
.
T Consensus 458 ~ 458 (571)
T KOG4441|consen 458 L 458 (571)
T ss_pred e
Confidence 3
No 412
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.62 E-value=0.68 Score=34.88 Aligned_cols=133 Identities=15% Similarity=0.147 Sum_probs=75.3
Q ss_pred CEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeec
Q 023643 42 DTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRW 121 (279)
Q Consensus 42 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 121 (279)
.+..-.-.++...+||..+ .+.+..+. ..+.=..++ .+++ .|+.......++++|.
T Consensus 101 ~l~qLTWk~~~~f~yd~~t-------------------l~~~~~~~-y~~EGWGLt--~dg~--~Li~SDGS~~L~~~dP 156 (264)
T PF05096_consen 101 KLYQLTWKEGTGFVYDPNT-------------------LKKIGTFP-YPGEGWGLT--SDGK--RLIMSDGSSRLYFLDP 156 (264)
T ss_dssp EEEEEESSSSEEEEEETTT-------------------TEEEEEEE--SSS--EEE--ECSS--CEEEE-SSSEEEEE-T
T ss_pred EEEEEEecCCeEEEEcccc-------------------ceEEEEEe-cCCcceEEE--cCCC--EEEEECCccceEEECC
Confidence 4445556788999999987 44444443 234556676 3444 5665555778999997
Q ss_pred CCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec--
Q 023643 122 KEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG-- 199 (279)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-- 199 (279)
.+......+...... .++. .++-+.|- +|...|=.=....|...|..+|+.+..+..
T Consensus 157 ~~f~~~~~i~V~~~g--~pv~------------------~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~ 215 (264)
T PF05096_consen 157 ETFKEVRTIQVTDNG--RPVS------------------NLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSG 215 (264)
T ss_dssp TT-SEEEEEE-EETT--EE---------------------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HH
T ss_pred cccceEEEEEEEECC--EECC------------------CcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhH
Confidence 765433322222211 1111 24556665 455555555677888999999988876521
Q ss_pred ----------C---CcceEEEEEcCC-CcEEEEe
Q 023643 200 ----------H---SDYLHCIVARNS-TNQIVTG 219 (279)
Q Consensus 200 ----------~---~~~i~~i~~~~~-~~~l~~~ 219 (279)
+ ..-...||+.|. +++++||
T Consensus 216 L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 216 LRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp HHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred hhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 1 245789999986 4556666
No 413
>PHA03098 kelch-like protein; Provisional
Probab=95.59 E-value=1.3 Score=37.81 Aligned_cols=64 Identities=8% Similarity=0.092 Sum_probs=34.7
Q ss_pred CCCeEEEecCC--------CeEEEEecCCCcEEEE--eecCCcceEEEEEcCCCcEEEEecCC-----CeEEEEeCCCCc
Q 023643 170 QGGAIFSAAGD--------SCAYCWDVESSRIKMV--FKGHSDYLHCIVARNSTNQIVTGSED-----GTARIWDCKSGK 234 (279)
Q Consensus 170 ~~~~l~~~~~d--------~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~~ 234 (279)
++..++.|+.+ ..+.+||..+.+-... +.........+.+ +++.++.|+.+ +.+.+||..+.+
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 44555556532 2388899876543321 1111111112222 56777777754 468888887765
Q ss_pred e
Q 023643 235 C 235 (279)
Q Consensus 235 ~ 235 (279)
.
T Consensus 515 W 515 (534)
T PHA03098 515 W 515 (534)
T ss_pred E
Confidence 4
No 414
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.46 E-value=1.2 Score=36.57 Aligned_cols=159 Identities=8% Similarity=0.075 Sum_probs=80.2
Q ss_pred eEEEEECCCCCCCCCEEEEe-cCCC----cEEEEeCCCCCcccccccCCcccceeeeccccc-cccCCccCeEEEEecCC
Q 023643 28 VFRTVWGPSKDGSPDTIVIA-SSDG----SITSYSIPSCISKLPLGLSNSKVQQLLGIEPDG-FLHGHDGPAYDVKFYGG 101 (279)
Q Consensus 28 v~~~~~~~~~~~~~~~l~~~-~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~ 101 (279)
+....++| +++++|.+ +..| .|+++|+.++ +.+. .+.. .....+.|.++
T Consensus 126 ~~~~~~Sp----dg~~la~~~s~~G~e~~~l~v~Dl~tg-------------------~~l~d~i~~--~~~~~~~W~~d 180 (414)
T PF02897_consen 126 LGGFSVSP----DGKRLAYSLSDGGSEWYTLRVFDLETG-------------------KFLPDGIEN--PKFSSVSWSDD 180 (414)
T ss_dssp EEEEEETT----TSSEEEEEEEETTSSEEEEEEEETTTT-------------------EEEEEEEEE--EESEEEEECTT
T ss_pred eeeeeECC----CCCEEEEEecCCCCceEEEEEEECCCC-------------------cCcCCcccc--cccceEEEeCC
Confidence 34678899 89988865 3333 5999999984 2221 1111 11223999999
Q ss_pred CCceEEEEeeCC----------CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC
Q 023643 102 NEDALLLSCGDD----------GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG 171 (279)
Q Consensus 102 ~~~~~l~s~~~d----------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 171 (279)
++ .++.+...+ ..|+.|++.+.... ....+....... ....+..++++
T Consensus 181 ~~-~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~-d~lvfe~~~~~~--------------------~~~~~~~s~d~ 238 (414)
T PF02897_consen 181 GK-GFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSE-DELVFEEPDEPF--------------------WFVSVSRSKDG 238 (414)
T ss_dssp SS-EEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTT--------------------SEEEEEE-TTS
T ss_pred CC-EEEEEEeCcccccccCCCCcEEEEEECCCChHh-CeeEEeecCCCc--------------------EEEEEEecCcc
Confidence 87 234443222 12566666432211 112221111110 02577889999
Q ss_pred CeEEEecC---C-CeEEEEecCCC-----cEEEEeecCCcceEEEEEcCCCcEEEEe---cCCCeEEEEeCCCCc
Q 023643 172 GAIFSAAG---D-SCAYCWDVESS-----RIKMVFKGHSDYLHCIVARNSTNQIVTG---SEDGTARIWDCKSGK 234 (279)
Q Consensus 172 ~~l~~~~~---d-~~i~i~d~~~~-----~~~~~~~~~~~~i~~i~~~~~~~~l~~~---~~d~~i~vwd~~~~~ 234 (279)
++++.... + ..+.+.|+..+ ..........+....+... .+.+++.. ...+.|.-.++....
T Consensus 239 ~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 239 RYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp SEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred cEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccc
Confidence 98765322 3 46888898864 3333333223333334333 34444333 234567777777654
No 415
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.45 E-value=1.8 Score=38.67 Aligned_cols=102 Identities=5% Similarity=0.083 Sum_probs=61.3
Q ss_pred eEEEcCC-CCeEEEecC----------CCeEEEEecCCCcEEEEeec--CCcceEEEEEcCCCcEEEEecCCCeEEEEeC
Q 023643 164 AIAVDPQ-GGAIFSAAG----------DSCAYCWDVESSRIKMVFKG--HSDYLHCIVARNSTNQIVTGSEDGTARIWDC 230 (279)
Q Consensus 164 ~~~~~~~-~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~ 230 (279)
++.|..| +.++++|+. .|.|.++.......++.... -.+.+.++..- +|+++| +-...|++|+.
T Consensus 779 s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA--~In~~vrLye~ 855 (1096)
T KOG1897|consen 779 SCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLA--GINQSVRLYEW 855 (1096)
T ss_pred eeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEE--ecCcEEEEEEc
Confidence 3345555 446666643 46777777665333332221 23445554321 456655 35778999999
Q ss_pred CCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEE
Q 023643 231 KSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVI 276 (279)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 276 (279)
.+.+.++.- ..+..++..+...-.|..++.|.--+.+.
T Consensus 856 t~~~eLr~e--------~~~~~~~~aL~l~v~gdeI~VgDlm~Sit 893 (1096)
T KOG1897|consen 856 TTERELRIE--------CNISNPIIALDLQVKGDEIAVGDLMRSIT 893 (1096)
T ss_pred cccceehhh--------hcccCCeEEEEEEecCcEEEEeeccceEE
Confidence 888666554 45666777777777888888886555443
No 416
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.44 E-value=0.13 Score=37.93 Aligned_cols=68 Identities=13% Similarity=0.177 Sum_probs=47.0
Q ss_pred EcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccc-ccc-------CcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 209 ARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDK-QLK-------GVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 209 ~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+..+++++++-+.+|.+++||+.+++.+..-. ... -+. .....|..+.++.+|.-|++=+ +|..+.|+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~--Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPV--SIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCc--cHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence 34468899999999999999999887654320 100 011 3556788899998888777654 46667765
No 417
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=0.75 Score=37.97 Aligned_cols=79 Identities=13% Similarity=0.067 Sum_probs=53.5
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecC---------CCcEEEEee-----------cCCcceEEEEEcCCC---cEEE
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVE---------SSRIKMVFK-----------GHSDYLHCIVARNST---NQIV 217 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~---------~~~~~~~~~-----------~~~~~i~~i~~~~~~---~~l~ 217 (279)
.|..+..++.|..++.++.+|.+.++=.+ .++..-..+ ...-.+..++|+|+. ..|+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 36778899999999999989977665322 233222111 111245678899964 6777
Q ss_pred EecCCCeEEEEeCCCCceEEEe
Q 023643 218 TGSEDGTARIWDCKSGKCIKVI 239 (279)
Q Consensus 218 ~~~~d~~i~vwd~~~~~~~~~~ 239 (279)
.-+.|+.||+||+.....+...
T Consensus 185 iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred EEecCcEEEEEecCCcchhhcc
Confidence 7888999999999876655443
No 418
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.32 E-value=0.29 Score=36.03 Aligned_cols=73 Identities=16% Similarity=0.264 Sum_probs=53.8
Q ss_pred EEcCCCCeEEEecCCCeEEEEecCCCcEEEEe-------e-------cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC
Q 023643 166 AVDPQGGAIFSAAGDSCAYCWDVESSRIKMVF-------K-------GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK 231 (279)
Q Consensus 166 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-------~-------~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~ 231 (279)
.+...+.++++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 34557788999999999999999987665432 1 2446788888888888877765 5788999876
Q ss_pred CCceEEEe
Q 023643 232 SGKCIKVI 239 (279)
Q Consensus 232 ~~~~~~~~ 239 (279)
-+.-+...
T Consensus 96 L~~W~~vs 103 (219)
T PF07569_consen 96 LGCWIRVS 103 (219)
T ss_pred cceeEEec
Confidence 55544433
No 419
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.13 E-value=0.98 Score=35.76 Aligned_cols=104 Identities=10% Similarity=0.058 Sum_probs=55.0
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcE---EEEe----ecCCcceEEEEEcCC----CcEEEEecCC--------
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRI---KMVF----KGHSDYLHCIVARNS----TNQIVTGSED-------- 222 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~----~~~~~~i~~i~~~~~----~~~l~~~~~d-------- 222 (279)
.+.|+|.|+++++++ ...|.|++++ ..+.. +..+ ......+..++++|+ +...++.+..
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 478999999876664 5599999999 33433 2222 123457899999994 4444443321
Q ss_pred CeEEEEeCCCC-------ceEE-EecCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643 223 GTARIWDCKSG-------KCIK-VIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT 272 (279)
Q Consensus 223 ~~i~vwd~~~~-------~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 272 (279)
..|.-|.+..+ +.+. .+.... ...| .-..|+|.|||.+.++.+..
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~---~~~H--~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTS---SGNH--NGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-C---SSSS---EEEEEE-TTSEEEEEEB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCC---CCCC--CCccccCCCCCcEEEEeCCC
Confidence 23433443332 1111 111100 0233 34569999999776665543
No 420
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.07 E-value=1.4 Score=35.23 Aligned_cols=81 Identities=17% Similarity=0.230 Sum_probs=40.1
Q ss_pred CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC----CCe-EEEEeCCC-CceEEEecCCccccccCccee
Q 023643 180 DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE----DGT-ARIWDCKS-GKCIKVIDPVKDKQLKGVISC 253 (279)
Q Consensus 180 d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~----d~~-i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~ 253 (279)
...|.-.|+.+|+....+. -...+..+.|+|....+++-+. +.. -|||-+++ +.....+..+. ....
T Consensus 167 ~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~------~~e~ 239 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM------EGES 239 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---------TTEE
T ss_pred CceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC------CCcc
Confidence 3567777888887766665 4567889999996444444333 222 36665543 44444443221 1234
Q ss_pred eeEEEEcCCCCEEE
Q 023643 254 VSCITLDASESWLV 267 (279)
Q Consensus 254 v~~~~~~~~~~~l~ 267 (279)
+..=-|.|||..|.
T Consensus 240 ~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 240 VGHEFWVPDGSTIW 253 (386)
T ss_dssp EEEEEE-TTSS-EE
T ss_pred cccccccCCCCEEE
Confidence 44445777776554
No 421
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.90 E-value=0.0049 Score=49.36 Aligned_cols=145 Identities=15% Similarity=0.179 Sum_probs=95.4
Q ss_pred eEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEE
Q 023643 28 VFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALL 107 (279)
Q Consensus 28 v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 107 (279)
-....|-| .+.-++.++.+..+..||-.. +.+... ...+....++|..+++ ..+
T Consensus 37 pi~~~w~~----e~~nlavaca~tiv~~YD~ag--------------------q~~le~-n~tg~aldm~wDkegd-vla 90 (615)
T KOG2247|consen 37 PIIHRWRP----EGHNLAVACANTIVIYYDKAG--------------------QVILEL-NPTGKALDMAWDKEGD-VLA 90 (615)
T ss_pred cceeeEec----CCCceehhhhhhHHHhhhhhc--------------------ceeccc-CCchhHhhhhhccccc-hhh
Confidence 33456777 555588888888899998664 111111 1345566788887776 355
Q ss_pred EEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEe
Q 023643 108 LSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWD 187 (279)
Q Consensus 108 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 187 (279)
+.+-..+.+.+||++.....+ ....+.+.. .-+.|++....++.+...|.+.+|+
T Consensus 91 vlAek~~piylwd~n~eytqq--LE~gg~~s~-----------------------sll~wsKg~~el~ig~~~gn~viyn 145 (615)
T KOG2247|consen 91 VLAEKTGPIYLWDVNSEYTQQ--LESGGTSSK-----------------------SLLAWSKGTPELVIGNNAGNIVIYN 145 (615)
T ss_pred hhhhcCCCeeechhhhhhHHH--HhccCcchH-----------------------HHHhhccCCccccccccccceEEEe
Confidence 667778999999986532211 122222221 2257888888888888999999999
Q ss_pred cCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCe
Q 023643 188 VESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224 (279)
Q Consensus 188 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~ 224 (279)
..+.+.+-..-.|...++++++.+.+. .+.++.|..
T Consensus 146 hgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~ 181 (615)
T KOG2247|consen 146 HGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNT 181 (615)
T ss_pred ccchhhhhhhcccccceeEEEecccce-eeecCcHHH
Confidence 887766655545888899999988654 444444443
No 422
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.86 E-value=1.8 Score=35.37 Aligned_cols=146 Identities=9% Similarity=0.001 Sum_probs=76.4
Q ss_pred eEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC--CCCeEEEecCCCe
Q 023643 105 ALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP--QGGAIFSAAGDSC 182 (279)
Q Consensus 105 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~ 182 (279)
..+++||..|.++||+...........-+..+-..|+..+. +=.|.+ +...|++ =.-..
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~------------------~G~F~s~~~~~~LaV-LhP~k 98 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVE------------------CGKFVSGSEDLQLAV-LHPRK 98 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEE------------------eccccCCCCcceEEE-ecCCE
Confidence 48999999999999998543212111222222222332221 112211 2223443 33466
Q ss_pred EEEEecCC--Cc-------EEEEeecCC--cceEEEEEcC----C-CcEEEEecCCCeEEEEeCCCCceEEEecCCcccc
Q 023643 183 AYCWDVES--SR-------IKMVFKGHS--DYLHCIVARN----S-TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQ 246 (279)
Q Consensus 183 i~i~d~~~--~~-------~~~~~~~~~--~~i~~i~~~~----~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 246 (279)
+.+|.+.. +. .+..+..|. .....++.-| . ..+|+.-+.||.+.+|+-+.-.....++.
T Consensus 99 l~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~----- 173 (418)
T PF14727_consen 99 LSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD----- 173 (418)
T ss_pred EEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-----
Confidence 77776631 11 111222222 2223333333 2 36788899999999999665443444421
Q ss_pred ccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 247 LKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 247 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
.---..++|.+....+++++.+..+.-|
T Consensus 174 ----~llPgPl~Y~~~tDsfvt~sss~~l~~Y 201 (418)
T PF14727_consen 174 ----FLLPGPLCYCPRTDSFVTASSSWTLECY 201 (418)
T ss_pred ----CCCCcCeEEeecCCEEEEecCceeEEEe
Confidence 1112345778877888888877766654
No 423
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.81 E-value=1.8 Score=35.29 Aligned_cols=193 Identities=11% Similarity=0.215 Sum_probs=99.2
Q ss_pred CCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccC--CccCeEEEEecCCCCceEEEEeeCCCcEEE
Q 023643 41 PDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHG--HDGPAYDVKFYGGNEDALLLSCGDDGRICG 118 (279)
Q Consensus 41 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 118 (279)
.+++.+=+.||.+.+|+-+.. ...+.+.. ..+ .+.|++..+ .|++++.+..+..
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~-------------------~f~~~lp~~llPg---Pl~Y~~~tD--sfvt~sss~~l~~ 200 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESF-------------------AFSRFLPDFLLPG---PLCYCPRTD--SFVTASSSWTLEC 200 (418)
T ss_pred ceEEEEEecCceEEEEeCCcE-------------------EEEEEcCCCCCCc---CeEEeecCC--EEEEecCceeEEE
Confidence 467888899999999998762 11112221 233 467888877 8999999999998
Q ss_pred eecCCCccCccee---------eeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecC
Q 023643 119 WRWKEFTESKVPI---------NLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVE 189 (279)
Q Consensus 119 w~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 189 (279)
|............ ...+....+-|.+.-.+..- .|..+.++.....+++-+ ...+.+.+.
T Consensus 201 Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l---------~i~v~~~~~~~~~IvvLg-er~Lf~l~~- 269 (418)
T PF14727_consen 201 YKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQAL---------DIQVVRFSSSESDIVVLG-ERSLFCLKD- 269 (418)
T ss_pred ecHHHhhhccccccccccccccccccccccceeEEECCceeE---------EEEEEEcCCCCceEEEEe-cceEEEEcC-
Confidence 8864321111100 00222333333333222211 133444443333444433 356666665
Q ss_pred CCcEEEEeecCCcceEEEE-EcC----CC---cEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcC
Q 023643 190 SSRIKMVFKGHSDYLHCIV-ARN----ST---NQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDA 261 (279)
Q Consensus 190 ~~~~~~~~~~~~~~i~~i~-~~~----~~---~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 261 (279)
+|+.....+- +....|++ |.. .+ ..++.++.++++.||. ..+.+..-.. ..-.-.|.-..|..
T Consensus 270 ~G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l------~~~PVal~v~~~~~ 340 (418)
T PF14727_consen 270 NGSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQL------PHVPVALSVANFNG 340 (418)
T ss_pred CCeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecCC------CCCCEEEEecccCC
Confidence 4655544442 32223332 221 22 2588899999999996 3444443321 11111222222333
Q ss_pred CCCEEEEEcCcceEEe
Q 023643 262 SESWLVRVRATNYVIL 277 (279)
Q Consensus 262 ~~~~l~~~~~d~~i~~ 277 (279)
-...|++=+.+|.+.+
T Consensus 341 ~~G~IV~Ls~~G~L~v 356 (418)
T PF14727_consen 341 LKGLIVSLSDEGQLSV 356 (418)
T ss_pred CCceEEEEcCCCcEEE
Confidence 3455666677777654
No 424
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.72 E-value=1.4 Score=33.42 Aligned_cols=148 Identities=15% Similarity=0.116 Sum_probs=84.2
Q ss_pred ceEEEEECCCCCCCCCEEEEec---CCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643 27 TVFRTVWGPSKDGSPDTIVIAS---SDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE 103 (279)
Q Consensus 27 ~v~~~~~~~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 103 (279)
.+.+.+.++ +++.+|... ....+.++.... .....+.+ ..+..-.|.+++.
T Consensus 25 ~~~s~AvS~----dg~~~A~v~~~~~~~~L~~~~~~~--------------------~~~~~~~g--~~l~~PS~d~~g~ 78 (253)
T PF10647_consen 25 DVTSPAVSP----DGSRVAAVSEGDGGRSLYVGPAGG--------------------PVRPVLTG--GSLTRPSWDPDGW 78 (253)
T ss_pred cccceEECC----CCCeEEEEEEcCCCCEEEEEcCCC--------------------cceeeccC--CccccccccCCCC
Confidence 688999999 888777655 333455554432 11111222 2577788999975
Q ss_pred ceEEEEeeCCCcEEEee-cCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec---C
Q 023643 104 DALLLSCGDDGRICGWR-WKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA---G 179 (279)
Q Consensus 104 ~~~l~s~~~dg~i~iw~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~ 179 (279)
..+....+...+++. ....... ......... ...|..+.++|||..++... .
T Consensus 79 --~W~v~~~~~~~~~~~~~~~g~~~--~~~v~~~~~--------------------~~~I~~l~vSpDG~RvA~v~~~~~ 134 (253)
T PF10647_consen 79 --VWTVDDGSGGVRVVRDSASGTGE--PVEVDWPGL--------------------RGRITALRVSPDGTRVAVVVEDGG 134 (253)
T ss_pred --EEEEEcCCCceEEEEecCCCcce--eEEeccccc--------------------CCceEEEEECCCCcEEEEEEecCC
Confidence 555555566666664 1111100 011110000 00379999999999876655 3
Q ss_pred CCeEEEEecC---CC------cEEEEeecCCcceEEEEEcCCCcEEEEecCCCe
Q 023643 180 DSCAYCWDVE---SS------RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224 (279)
Q Consensus 180 d~~i~i~d~~---~~------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~ 224 (279)
++.|.+--+. .+ .++.........+..+.|.+++.+++.+...+.
T Consensus 135 ~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 135 GGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGG 188 (253)
T ss_pred CCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCC
Confidence 5777766543 22 112222233467899999999888776655443
No 425
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=94.72 E-value=0.34 Score=41.32 Aligned_cols=72 Identities=19% Similarity=0.271 Sum_probs=45.8
Q ss_pred CCCCeEEEecCCCeEEEEecCC----CcEEEEe--ec--------------------CCcceEEEEEcC----CCcEEEE
Q 023643 169 PQGGAIFSAAGDSCAYCWDVES----SRIKMVF--KG--------------------HSDYLHCIVARN----STNQIVT 218 (279)
Q Consensus 169 ~~~~~l~~~~~d~~i~i~d~~~----~~~~~~~--~~--------------------~~~~i~~i~~~~----~~~~l~~ 218 (279)
++...++++..||.+....... +...... .. ..+....+++++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667888888999988887664 2221111 00 123345566665 6789999
Q ss_pred ecCCCeEEEEeCCCCceEEEec
Q 023643 219 GSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 219 ~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
.+.|+++|+||+.+++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999977653
No 426
>PHA02790 Kelch-like protein; Provisional
Probab=94.53 E-value=2.5 Score=35.52 Aligned_cols=90 Identities=9% Similarity=-0.052 Sum_probs=44.7
Q ss_pred CCCeEEEecCC---CeEEEEecCCCcEEEE--eecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCcc
Q 023643 170 QGGAIFSAAGD---SCAYCWDVESSRIKMV--FKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKD 244 (279)
Q Consensus 170 ~~~~l~~~~~d---~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 244 (279)
++...+.|+.+ ..+..||.++.+-... +....... +++ .-+++..+.|+ .+.+||.++++....-..
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m--- 433 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGRRLFLVGR---NAEFYCESSNTWTLIDDP--- 433 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECCEEEEECC---ceEEecCCCCcEeEcCCC---
Confidence 46666666654 3467888876543221 11111111 221 23466666664 577899887765432211
Q ss_pred ccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643 245 KQLKGVISCVSCITLDASESWLVRVRAT 272 (279)
Q Consensus 245 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d 272 (279)
.........+.+ +++..+.|+.+
T Consensus 434 ---~~~r~~~~~~v~--~~~IYviGG~~ 456 (480)
T PHA02790 434 ---IYPRDNPELIIV--DNKLLLIGGFY 456 (480)
T ss_pred ---CCCccccEEEEE--CCEEEEECCcC
Confidence 111112222222 57778888754
No 427
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.47 E-value=1.9 Score=34.05 Aligned_cols=110 Identities=9% Similarity=0.103 Sum_probs=69.7
Q ss_pred CceeEEEcCCCCeEEEecCCCe------EEEEecCC--C--cEEE-----EeecCCc--------ceEEEEEcCCCcEEE
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSC------AYCWDVES--S--RIKM-----VFKGHSD--------YLHCIVARNSTNQIV 217 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~------i~i~d~~~--~--~~~~-----~~~~~~~--------~i~~i~~~~~~~~l~ 217 (279)
.+..|.+.|++..+++.+.++. +..+++.. + ..+. .+....+ -.-+|++.+++.+++
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~i 100 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFWI 100 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEEE
Confidence 4688999976667777777777 66666543 1 1111 1111111 233678867888888
Q ss_pred EecCC------CeEEEEeCCCCceEEEecCCccc-------cccCcceeeeEEEEcCCCCEEEEEcC
Q 023643 218 TGSED------GTARIWDCKSGKCIKVIDPVKDK-------QLKGVISCVSCITLDASESWLVRVRA 271 (279)
Q Consensus 218 ~~~~d------~~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~~ 271 (279)
+.=.+ -.|.-++.. |+....+..+... .-...+....+++++|+|+.|+++.+
T Consensus 101 s~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 101 SSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 77667 788888876 7777766433211 11234567899999999997766543
No 428
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.38 E-value=0.82 Score=38.74 Aligned_cols=60 Identities=15% Similarity=0.258 Sum_probs=42.4
Q ss_pred CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 181 SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 181 ~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
+.|.-+|+.+++.+-..+......... ..-.+..++.++.+|.++.+|.++|+.+..++.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 567888888888887765322111111 112456777888899999999999999998854
No 429
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.31 E-value=1 Score=41.29 Aligned_cols=71 Identities=24% Similarity=0.328 Sum_probs=49.1
Q ss_pred CceeEEEcCCCCeEEEecCCCeEE--EEecCCC---c-E----------------EEEee-cCCcceEEEEEcCCCcEEE
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAY--CWDVESS---R-I----------------KMVFK-GHSDYLHCIVARNSTNQIV 217 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~--i~d~~~~---~-~----------------~~~~~-~~~~~i~~i~~~~~~~~l~ 217 (279)
.|+|+....+|+.+++|- ||.|+ .|....+ + + +-.+. .+..+|..+......+.+.
T Consensus 180 ~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY 258 (1311)
T KOG1900|consen 180 SVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILY 258 (1311)
T ss_pred eEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceee
Confidence 378898788888777655 55443 2222211 1 1 11122 4567999999998889999
Q ss_pred EecCCCeEEEEeCCC
Q 023643 218 TGSEDGTARIWDCKS 232 (279)
Q Consensus 218 ~~~~d~~i~vwd~~~ 232 (279)
+-+..|+|++||+..
T Consensus 259 ~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 259 VLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeccCceEEEEEccC
Confidence 999999999999976
No 430
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.29 E-value=1.4 Score=36.42 Aligned_cols=61 Identities=18% Similarity=0.191 Sum_probs=47.6
Q ss_pred CCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC
Q 023643 170 QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK 231 (279)
Q Consensus 170 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~ 231 (279)
...++++++..|-|++||--..+....+.+-...|..+..+.+|+++++.+ ...+-+-|++
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 455899999999999999765555566677778899999999999988766 4456666664
No 431
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.24 E-value=2.4 Score=34.18 Aligned_cols=60 Identities=13% Similarity=0.245 Sum_probs=37.0
Q ss_pred ceeEEEcCCCCeEEEecC-------------------CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC
Q 023643 162 NNAIAVDPQGGAIFSAAG-------------------DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED 222 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~-------------------d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 222 (279)
...+.|.|+|.+.++-+. .+.|.-+|...++....-.++ .....++|+|+|+++++-..+
T Consensus 126 ~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 126 LNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEccCC
Confidence 578899999876554331 145666666654433222232 334689999999888765433
No 432
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=3.7 Score=35.70 Aligned_cols=40 Identities=8% Similarity=0.038 Sum_probs=32.7
Q ss_pred CcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 201 SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 201 ~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
.+.+..|..||+.++|+--..+|.|.+-+....+....++
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 3567788999999999999999999998887777666665
No 433
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.04 E-value=1.8 Score=35.20 Aligned_cols=99 Identities=9% Similarity=0.053 Sum_probs=65.3
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEE----EEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce-
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIK----MVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC- 235 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~- 235 (279)
+|.++.|++|.+.+++--.+..|-+++..-.+.. .+.+.....|....|+.+ .-++.-+..| +-+|-+...+.
T Consensus 68 ~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrs 145 (657)
T KOG2377|consen 68 EIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRS 145 (657)
T ss_pred ceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhh
Confidence 4899999999999999999999999997432222 233334556888888765 4455444444 56665543322
Q ss_pred EEEecCCccccccCcceeeeEEEEcCCCCEEEEE
Q 023643 236 IKVIDPVKDKQLKGVISCVSCITLDASESWLVRV 269 (279)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 269 (279)
++.. +.|...|.-..|.++.+.+.-+
T Consensus 146 lRlV--------ks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 146 LRLV--------KSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred hhhh--------hhcccCccEEEEccccceEeee
Confidence 2222 4666778888888887654433
No 434
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=94.03 E-value=2.3 Score=33.15 Aligned_cols=97 Identities=12% Similarity=0.179 Sum_probs=63.5
Q ss_pred CCeEEEEecCCCcEEEEeec--C-------------------------CcceEEEEEcCCCcEEEEecCCCeEEEEeCCC
Q 023643 180 DSCAYCWDVESSRIKMVFKG--H-------------------------SDYLHCIVARNSTNQIVTGSEDGTARIWDCKS 232 (279)
Q Consensus 180 d~~i~i~d~~~~~~~~~~~~--~-------------------------~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~ 232 (279)
|+.+.-.|+.+++.+.+... | ---+.+|...++|.+|++.-.-..|.+.|.++
T Consensus 95 d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~t 174 (299)
T PF14269_consen 95 DDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPST 174 (299)
T ss_pred cceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEecccCEEEEEECCC
Confidence 55666777777877765421 0 01266777778899999999999999999999
Q ss_pred CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 233 GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
|+.+..+.+.....+.. .-...++-.+-+++-.+..++.|.+||
T Consensus 175 G~I~W~lgG~~~~df~~---~~~~f~~QHdar~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 175 GKIIWRLGGKRNSDFTL---PATNFSWQHDARFLNESNDDGTISLFD 218 (299)
T ss_pred CcEEEEeCCCCCCcccc---cCCcEeeccCCEEeccCCCCCEEEEEc
Confidence 99999985542111111 112244445555555556677777775
No 435
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.93 E-value=0.97 Score=36.63 Aligned_cols=123 Identities=11% Similarity=0.024 Sum_probs=50.5
Q ss_pred Cceeeeccccccccceeeeeec--ccceEEEEECCCCCCCCCEEEEe-cCCCcEEEEeC-CCCC--cccccccCCcccce
Q 023643 3 GDSTNWDEDAYRKSILKEREIL--TRTVFRTVWGPSKDGSPDTIVIA-SSDGSITSYSI-PSCI--SKLPLGLSNSKVQQ 76 (279)
Q Consensus 3 G~v~iw~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~l~~~-~~dg~i~iw~~-~~~~--~~~~~~~~~~~~~~ 76 (279)
..+.+||+...+. ++++..- ......+.|...+ +..+-++| .-..+|..|-- ..+. .+..+...+.....
T Consensus 222 ~~l~vWD~~~r~~--~Q~idLg~~g~~pLEvRflH~P--~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 222 HSLHVWDWSTRKL--LQTIDLGEEGQMPLEVRFLHDP--DANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp -EEEEEETTTTEE--EEEEES-TTEEEEEEEEE-SST--T--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred CeEEEEECCCCcE--eeEEecCCCCCceEEEEecCCC--CccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 3689999988754 4444432 2346677776532 33443333 23344444433 2211 00011111100000
Q ss_pred eeeccccccccCCccCeEEEEecCCCCceEE-EEeeCCCcEEEeecCCCccCccee
Q 023643 77 LLGIEPDGFLHGHDGPAYDVKFYGGNEDALL-LSCGDDGRICGWRWKEFTESKVPI 131 (279)
Q Consensus 77 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~ 131 (279)
-.....++.+..-..-|+.|..+.+.+ +| +++=..|.|+.||+.+....+...
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDr--fLYvs~W~~GdvrqYDISDP~~Pkl~g 351 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDR--FLYVSNWLHGDVRQYDISDPFNPKLVG 351 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS---EEEEEETTTTEEEEEE-SSTTS-EEEE
T ss_pred ccccccccccccCCCceEeEEEccCCC--EEEEEcccCCcEEEEecCCCCCCcEEe
Confidence 000111122222345688999999998 55 455569999999998754444433
No 436
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.84 E-value=0.96 Score=31.95 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=22.6
Q ss_pred eeeeEEEEcCCC------CEEEEEcCcceEEeC
Q 023643 252 SCVSCITLDASE------SWLVRVRATNYVILF 278 (279)
Q Consensus 252 ~~v~~~~~~~~~------~~l~~~~~d~~i~~w 278 (279)
..+.+++|||.| .+|++-+.++.|.+|
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~ 118 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLY 118 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEE
Confidence 378899999954 578888999999987
No 437
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.78 E-value=0.44 Score=24.15 Aligned_cols=40 Identities=13% Similarity=0.312 Sum_probs=27.2
Q ss_pred CCCCeEEEec-CCCeEEEEecCCCcEEEEeecCCcceEEEEE
Q 023643 169 PQGGAIFSAA-GDSCAYCWDVESSRIKMVFKGHSDYLHCIVA 209 (279)
Q Consensus 169 ~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~ 209 (279)
|+++.|+++. .++.|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 4667666654 5789999999988888877652 33344444
No 438
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=93.51 E-value=5.3 Score=35.72 Aligned_cols=67 Identities=12% Similarity=-0.025 Sum_probs=49.1
Q ss_pred CCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEe----ec---------------CCcceEEEEEcCCCcEEEEec
Q 023643 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVF----KG---------------HSDYLHCIVARNSTNQIVTGS 220 (279)
Q Consensus 160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~---------------~~~~i~~i~~~~~~~~l~~~~ 220 (279)
+.|.++....-+..++....||+|.++|..+.+.+... .. +...+..++|||.+--++.-.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 45777877777778999999999999998877555443 10 111344578999888888888
Q ss_pred CCCeEE
Q 023643 221 EDGTAR 226 (279)
Q Consensus 221 ~d~~i~ 226 (279)
.+|.+.
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 888765
No 439
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.48 E-value=4.3 Score=34.56 Aligned_cols=74 Identities=16% Similarity=0.260 Sum_probs=51.3
Q ss_pred eEEEcCCCCeEEEecCC----------------CeEEEEecCCCcEEEEeecCCcce---------EEEEEcCCCc---E
Q 023643 164 AIAVDPQGGAIFSAAGD----------------SCAYCWDVESSRIKMVFKGHSDYL---------HCIVARNSTN---Q 215 (279)
Q Consensus 164 ~~~~~~~~~~l~~~~~d----------------~~i~i~d~~~~~~~~~~~~~~~~i---------~~i~~~~~~~---~ 215 (279)
.++++|...+++.+..+ .+|.-.|+++|+.+-.++.....+ .-+.+..+|+ .
T Consensus 238 ~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~ 317 (527)
T TIGR03075 238 TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKL 317 (527)
T ss_pred ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEE
Confidence 45777777777766522 267888999999998887422211 1122223555 7
Q ss_pred EEEecCCCeEEEEeCCCCceEE
Q 023643 216 IVTGSEDGTARIWDCKSGKCIK 237 (279)
Q Consensus 216 l~~~~~d~~i~vwd~~~~~~~~ 237 (279)
++.+..+|.+.+.|.++|+.+.
T Consensus 318 v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 318 LAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred EEEeCCCceEEEEECCCCceec
Confidence 8899999999999999999863
No 440
>PRK13684 Ycf48-like protein; Provisional
Probab=93.35 E-value=3.3 Score=32.87 Aligned_cols=65 Identities=11% Similarity=0.019 Sum_probs=37.6
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee---cCCcceEEEEEcCCCcEEEEecCCCeEEEEe
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK---GHSDYLHCIVARNSTNQIVTGSEDGTARIWD 229 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd 229 (279)
+..+.+.|++..++ ++.+|.+.. ....++.-.... .-....+.+.|..+++.++ .+..|.|--|+
T Consensus 262 l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 262 YLDLAYRTPGEIWA-GGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred eeeEEEcCCCCEEE-EcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 57788888776554 555675543 334343322222 2224577788776666555 45678777665
No 441
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.12 E-value=6.4 Score=35.49 Aligned_cols=97 Identities=8% Similarity=0.094 Sum_probs=67.9
Q ss_pred CCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC--CceEEEecCCccccc
Q 023643 170 QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS--GKCIKVIDPVKDKQL 247 (279)
Q Consensus 170 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~--~~~~~~~~~~~~~~~ 247 (279)
+|+++| +-...|++|+..+.+.++.-..+..++..+...-.|..++.|..-+++.+...+. |.....-+
T Consensus 839 ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr------- 909 (1096)
T KOG1897|consen 839 NGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR------- 909 (1096)
T ss_pred CCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeeh-------
Confidence 455554 3357899999998888887777888999999988999999999888877765543 33444332
Q ss_pred cCcceeeeEEEEcCCCCEEEEEcCcceEE
Q 023643 248 KGVISCVSCITLDASESWLVRVRATNYVI 276 (279)
Q Consensus 248 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 276 (279)
..+..+++++.+-.+.. ++.+..+|.+.
T Consensus 910 D~~p~Wmtaveil~~d~-ylgae~~gNlf 937 (1096)
T KOG1897|consen 910 DYNPNWMTAVEILDDDT-YLGAENSGNLF 937 (1096)
T ss_pred hhCccceeeEEEecCce-EEeecccccEE
Confidence 45667888888765444 44444555543
No 442
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.09 E-value=3 Score=31.65 Aligned_cols=110 Identities=15% Similarity=0.056 Sum_probs=64.6
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecC-CcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGH-SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
.....|++.|++-+++.. |.---.|.. ...+..+... ....+.|+..|+|..-++.-.++.|-..|..++.. ..+.
T Consensus 150 let~vfD~~G~lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~a-ev~p 226 (353)
T COG4257 150 LETAVFDPWGNLWFTGQI-GAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHA-EVVP 226 (353)
T ss_pred ccceeeCCCccEEEeecc-ccceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCc-ceec
Confidence 567889999998888763 111111211 1223333322 23457788889999888877788888888877733 3333
Q ss_pred CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+ ......-..+--+|.|+.-+|....+.+..||
T Consensus 227 ~P-----~~~~~gsRriwsdpig~~wittwg~g~l~rfd 260 (353)
T COG4257 227 QP-----NALKAGSRRIWSDPIGRAWITTWGTGSLHRFD 260 (353)
T ss_pred CC-----CcccccccccccCccCcEEEeccCCceeeEeC
Confidence 22 22222334455567777777766666665553
No 443
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.06 E-value=0.18 Score=40.99 Aligned_cols=91 Identities=14% Similarity=0.244 Sum_probs=64.7
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
.|.+.+||++......+..-..|.... +.|++ ....++.+...|.+.|++..+ .+
T Consensus 96 ~~piylwd~n~eytqqLE~gg~~s~sl--l~wsK----g~~el~ig~~~gn~viynhgt-------------------sR 150 (615)
T KOG2247|consen 96 TGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSK----GTPELVIGNNAGNIVIYNHGT-------------------SR 150 (615)
T ss_pred CCCeeechhhhhhHHHHhccCcchHHH--Hhhcc----CCccccccccccceEEEeccc-------------------hh
Confidence 367889997764433332222233333 78999 788899999999999999987 34
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEee
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWR 120 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~ 120 (279)
.+..+-.|..++.++++.+.+ +.+.++.|..+.+-.
T Consensus 151 ~iiv~Gkh~RRgtq~av~lEd---~vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 151 RIIVMGKHQRRGTQIAVTLED---YVILCDCDNTLSVTT 186 (615)
T ss_pred hhhhhcccccceeEEEecccc---eeeecCcHHHHHHhh
Confidence 444444499999999999987 688888777665544
No 444
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.94 E-value=4.4 Score=33.10 Aligned_cols=135 Identities=16% Similarity=0.108 Sum_probs=65.5
Q ss_pred EEEEee-CCCcEEEeecCCCccCcceeeeccC-cccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec-----
Q 023643 106 LLLSCG-DDGRICGWRWKEFTESKVPINLQGN-HVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA----- 178 (279)
Q Consensus 106 ~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----- 178 (279)
+|+..+ ..+.|.|.|+.+......+...... ....-..+. .-..+..-|+|+.++++-
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s---------------~PHT~Hclp~G~imIS~lGd~~G 153 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLS---------------RPHTVHCLPDGRIMISALGDADG 153 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EE---------------EEEEEEE-SS--EEEEEEEETTS
T ss_pred cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCC---------------CCceeeecCCccEEEEeccCCCC
Confidence 666655 7889999998754433332222111 110000000 013445567888777742
Q ss_pred -CCCeEEEEecCCCcEEEEeecC---CcceEEEEEcCCCcEEEEec--------------------CCCeEEEEeCCCCc
Q 023643 179 -GDSCAYCWDVESSRIKMVFKGH---SDYLHCIVARNSTNQIVTGS--------------------EDGTARIWDCKSGK 234 (279)
Q Consensus 179 -~d~~i~i~d~~~~~~~~~~~~~---~~~i~~i~~~~~~~~l~~~~--------------------~d~~i~vwd~~~~~ 234 (279)
.-|-+.++|-++.+.+...+.. ...-+.+.|.|..+.++|.. ...++.+||+.+.+
T Consensus 154 ~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~ 233 (461)
T PF05694_consen 154 NGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK 233 (461)
T ss_dssp -S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE
T ss_pred CCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc
Confidence 2356888998888887776542 23456788888888888875 25579999999999
Q ss_pred eEEEecCCccccccCcceeeeEEEEcC
Q 023643 235 CIKVIDPVKDKQLKGVISCVSCITLDA 261 (279)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~v~~~~~~~ 261 (279)
.++++.... .......+.|..
T Consensus 234 ~~Q~idLg~------~g~~pLEvRflH 254 (461)
T PF05694_consen 234 LLQTIDLGE------EGQMPLEVRFLH 254 (461)
T ss_dssp EEEEEES-T------TEEEEEEEEE-S
T ss_pred EeeEEecCC------CCCceEEEEecC
Confidence 999997532 122344566654
No 445
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=92.76 E-value=5 Score=33.29 Aligned_cols=52 Identities=8% Similarity=0.038 Sum_probs=36.2
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcE--EEEee-----cCCcceEEEEEcCCC
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRI--KMVFK-----GHSDYLHCIVARNST 213 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~-----~~~~~i~~i~~~~~~ 213 (279)
.+.|+|.|++++|++--..|.|++++..++.. +..+. ...+.+..|+++|+-
T Consensus 32 Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 32 PWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred ceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 47899999998777665569999998665432 21111 135778999999874
No 446
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=92.56 E-value=0.97 Score=38.61 Aligned_cols=36 Identities=17% Similarity=0.356 Sum_probs=28.3
Q ss_pred ceeEEEcC----CCCeEEEecCCCeEEEEecCCCcEEEEe
Q 023643 162 NNAIAVDP----QGGAIFSAAGDSCAYCWDVESSRIKMVF 197 (279)
Q Consensus 162 i~~~~~~~----~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 197 (279)
...+++++ +..++++.+.|+.+|+||+.+++++.+.
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 45566666 6678999999999999999999996654
No 447
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.48 E-value=5.2 Score=32.79 Aligned_cols=160 Identities=10% Similarity=0.075 Sum_probs=84.7
Q ss_pred ccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCce-e
Q 023643 86 LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENN-A 164 (279)
Q Consensus 86 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~ 164 (279)
+..--..|..+-..|+++ .+..-+. ..+.++++.+..-... .+....... ... .|+ .
T Consensus 216 L~~~~~~v~qllL~Pdg~--~LYv~~g-~~~~v~~L~~r~l~~r--kl~~dspg~--------~~~---------~Vte~ 273 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGK--TLYVRTG-SELVVALLDKRSLQIR--KLVDDSPGD--------SRH---------QVTEQ 273 (733)
T ss_pred cCCCccchHhhEECCCCC--EEEEecC-CeEEEEeecccccchh--hhhhcCCCc--------hHH---------HHHHH
Confidence 333445677788889998 5554443 6788888754221111 111000000 000 011 2
Q ss_pred EEEcCCCCeEEEecCCCeEEEE-ecCCC-----cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE
Q 023643 165 IAVDPQGGAIFSAAGDSCAYCW-DVESS-----RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV 238 (279)
Q Consensus 165 ~~~~~~~~~l~~~~~d~~i~i~-d~~~~-----~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 238 (279)
+..-..+.-+.+++.||.|.-| |.+.+ ..++.++-....+..+.-..+.+-+++-+..|++.++.....+.+-.
T Consensus 274 l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~ 353 (733)
T COG4590 274 LYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF 353 (733)
T ss_pred HHHHhCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh
Confidence 2222345567788889988766 55432 22333333334444443333455677888888888887554444332
Q ss_pred ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643 239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL 277 (279)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 277 (279)
- .--....-+++||++.+|++-.. |.+++
T Consensus 354 ~---------~~~~~~~~~~~Sp~~~~Ll~e~~-gki~~ 382 (733)
T COG4590 354 E---------RAYQAPQLVAMSPNQAYLLSEDQ-GKIRL 382 (733)
T ss_pred h---------hhhcCcceeeeCcccchheeecC-CceEE
Confidence 2 11124567889999998887533 44554
No 448
>PRK10115 protease 2; Provisional
Probab=92.47 E-value=2.7 Score=37.10 Aligned_cols=70 Identities=9% Similarity=-0.014 Sum_probs=46.1
Q ss_pred ceeEEEcCCCCeEEEecC-----CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC------CeEEEEeC
Q 023643 162 NNAIAVDPQGGAIFSAAG-----DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED------GTARIWDC 230 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------~~i~vwd~ 230 (279)
+..+.++|++++|+.+.. ...|++.|+.+++.+...-.... ..++|.++++.|+....+ ..|..+++
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 567889999998776532 24589999988864322211111 458999988766554332 35788888
Q ss_pred CCC
Q 023643 231 KSG 233 (279)
Q Consensus 231 ~~~ 233 (279)
.++
T Consensus 207 gt~ 209 (686)
T PRK10115 207 GTP 209 (686)
T ss_pred CCC
Confidence 877
No 449
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.38 E-value=5.7 Score=33.08 Aligned_cols=53 Identities=21% Similarity=0.302 Sum_probs=39.8
Q ss_pred CCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643 212 STNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT 272 (279)
Q Consensus 212 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 272 (279)
...+++.+|..|-|++||. -|....+.- .+....|..+..+.+|.++++.+..
T Consensus 572 esGyIa~as~kGDirLyDR-ig~rAKtal-------P~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDR-IGKRAKTAL-------PGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred cCceEEEecCCCceeeehh-hcchhhhcC-------cccccceeeeEeecCCcEEEEeecc
Confidence 4679999999999999994 444443332 4666788889999999988776653
No 450
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.32 E-value=3.4 Score=33.75 Aligned_cols=37 Identities=14% Similarity=0.031 Sum_probs=30.6
Q ss_pred eeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCC
Q 023643 21 REILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSC 61 (279)
Q Consensus 21 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 61 (279)
+......+.+++.+| ++.+.|+..+-|.|.++|+.++
T Consensus 303 l~D~~R~~~~i~~sP----~~~laA~tDslGRV~LiD~~~~ 339 (415)
T PF14655_consen 303 LPDSKREGESICLSP----SGRLAAVTDSLGRVLLIDVARG 339 (415)
T ss_pred eccCCceEEEEEECC----CCCEEEEEcCCCcEEEEECCCC
Confidence 333455688999999 8999999888899999999983
No 451
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.25 E-value=2.8 Score=29.62 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=25.9
Q ss_pred cCeEEEEecCCCC----ceEEEEeeCCCcEEEeecC
Q 023643 91 GPAYDVKFYGGNE----DALLLSCGDDGRICGWRWK 122 (279)
Q Consensus 91 ~~v~~~~~~~~~~----~~~l~s~~~dg~i~iw~~~ 122 (279)
..+..++|+|.|- +-+|++...++.|.||...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 3688999999543 2479999999999999854
No 452
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.86 E-value=5.2 Score=35.73 Aligned_cols=70 Identities=13% Similarity=0.192 Sum_probs=51.5
Q ss_pred CCeEEEecCCCeEEEEecCCCcEEEEeecCCcc--------eEEEEEcC----------------CCcEEEEecCCCeEE
Q 023643 171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDY--------LHCIVARN----------------STNQIVTGSEDGTAR 226 (279)
Q Consensus 171 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--------i~~i~~~~----------------~~~~l~~~~~d~~i~ 226 (279)
+..+++++.++.|.-.|..+++.+-++...... .+.+++.. ++..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 557888888999999999999998887543211 12233321 345788889999999
Q ss_pred EEeCCCCceEEEec
Q 023643 227 IWDCKSGKCIKVID 240 (279)
Q Consensus 227 vwd~~~~~~~~~~~ 240 (279)
-.|.++|+....+.
T Consensus 274 ALDA~TGk~~W~fg 287 (764)
T TIGR03074 274 ALDADTGKLCEDFG 287 (764)
T ss_pred EEECCCCCEEEEec
Confidence 99999999987763
No 453
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.75 E-value=0.11 Score=45.27 Aligned_cols=89 Identities=11% Similarity=0.139 Sum_probs=56.5
Q ss_pred CeEEEEecC--CCcEEEEee-----cCCcceEEEEEcC---CCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCc
Q 023643 181 SCAYCWDVE--SSRIKMVFK-----GHSDYLHCIVARN---STNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGV 250 (279)
Q Consensus 181 ~~i~i~d~~--~~~~~~~~~-----~~~~~i~~i~~~~---~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 250 (279)
|.+.+||+. .|+....+. .....+.-+.|.| ..-++..+-.++.+++........ ..+ .+|
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~--------rsH 223 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLF--------RSH 223 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHH--------Hhc
Confidence 667888875 344333322 2234455566665 566777788888888877654322 222 334
Q ss_pred ceeeeEEE-----------EcCCCCEEEEEcCcceEEeC
Q 023643 251 ISCVSCIT-----------LDASESWLVRVRATNYVILF 278 (279)
Q Consensus 251 ~~~v~~~~-----------~~~~~~~l~~~~~d~~i~~w 278 (279)
..++..++ .+|||..++++..||.+++|
T Consensus 224 s~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~ 262 (1283)
T KOG1916|consen 224 SQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY 262 (1283)
T ss_pred CCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee
Confidence 44444333 58999999999999999887
No 454
>PHA02790 Kelch-like protein; Provisional
Probab=91.69 E-value=7.3 Score=32.81 Aligned_cols=60 Identities=10% Similarity=-0.009 Sum_probs=31.2
Q ss_pred CCCeEEEecCCCeEEEEecCCCcEE--EEeecCCcceEEEEEcCCCcEEEEecCC-----CeEEEEeCCCCc
Q 023643 170 QGGAIFSAAGDSCAYCWDVESSRIK--MVFKGHSDYLHCIVARNSTNQIVTGSED-----GTARIWDCKSGK 234 (279)
Q Consensus 170 ~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~~ 234 (279)
++...+.| |.+.+||.++.+-. ..+.........+. -+++..+.|+.+ ..+.+||..+++
T Consensus 407 ~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 407 GRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 34444545 34678888765432 22221122222222 357788888754 346677766554
No 455
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.53 E-value=10 Score=34.16 Aligned_cols=190 Identities=12% Similarity=0.073 Sum_probs=103.0
Q ss_pred ecccceEEEEEC---CCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccC---CccCeEEE
Q 023643 23 ILTRTVFRTVWG---PSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHG---HDGPAYDV 96 (279)
Q Consensus 23 ~~~~~v~~~~~~---~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~ 96 (279)
....+|..++|. ........+|++- ....+.|+...-....... ... ...+...++..+.. -..+...+
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~---~~~-~s~i~~~~l~~i~~~~tgg~~~aDv 151 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSI---RSR-PSRIDPNPLLTISSSDTGGFPHADV 151 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccc---cCC-ccccccceeEEechhhcCCCccceE
Confidence 346789999998 3211233465554 4456778774332210000 000 00011233334432 23467789
Q ss_pred EecCCCCceEEEEeeCCCcEEEeecCCCc-cCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEE
Q 023643 97 KFYGGNEDALLLSCGDDGRICGWRWKEFT-ESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF 175 (279)
Q Consensus 97 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 175 (279)
+|+|... ..||.....|...||++.... .............+.+ +...... ..-..+.|.++...|+
T Consensus 152 ~FnP~~~-~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi--~~d~~e~---------s~w~rI~W~~~~~~lL 219 (765)
T PF10214_consen 152 AFNPWDQ-RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSI--IFDPEEL---------SNWKRILWVSDSNRLL 219 (765)
T ss_pred EeccCcc-ceEEEEeccCcEEEEEeccccccCCcceeeccCCCccc--cCCCccc---------CcceeeEecCCCCEEE
Confidence 9999776 489999999999999992111 1111222222222222 0111111 1235788988888887
Q ss_pred EecCCCeEEEEecCCCcEEE-Ee-ecCCcceEEEEEcCC--CcEEEEecCCCeEEEEeCCC
Q 023643 176 SAAGDSCAYCWDVESSRIKM-VF-KGHSDYLHCIVARNS--TNQIVTGSEDGTARIWDCKS 232 (279)
Q Consensus 176 ~~~~d~~i~i~d~~~~~~~~-~~-~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~vwd~~~ 232 (279)
+.+ ...+.++|+++..... .. ......|..+.-+|. +..++- ....|...++..
T Consensus 220 v~~-r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 220 VCN-RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKS 277 (765)
T ss_pred EEc-CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE--ecCeEEEEEccC
Confidence 766 4678999998775533 21 224567888888886 233222 235677777665
No 456
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.49 E-value=5.9 Score=31.37 Aligned_cols=168 Identities=17% Similarity=0.194 Sum_probs=88.4
Q ss_pred ccCeEEEEecCCCCceEEEEeeCCCc------EEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCce
Q 023643 90 DGPAYDVKFYGGNEDALLLSCGDDGR------ICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENN 163 (279)
Q Consensus 90 ~~~v~~~~~~~~~~~~~l~s~~~dg~------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 163 (279)
-+.+..|.+.|++. .+++.+.+|. +...++............ .....+.... ..++.. ......
T Consensus 19 ~GGlSgl~~~~~~~--~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~L~~~~-G~~~~~--~~~D~E 88 (326)
T PF13449_consen 19 FGGLSGLDYDPDDG--RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTI-----LDMIPLRDPD-GQPFPK--NGLDPE 88 (326)
T ss_pred cCcEeeEEEeCCCC--EEEEEECCCCCCCCCcEEEEEeeccCCCccceEe-----ccceeccCCC-CCcCCc--CCCChh
Confidence 35678899997665 7777788887 655555431110000000 0000111111 111100 001246
Q ss_pred eEEEcCCCCeEEEecCC------CeEEEEecCCCcEEEEee---------------cCCcceEEEEEcCCCcEEEEecC-
Q 023643 164 AIAVDPQGGAIFSAAGD------SCAYCWDVESSRIKMVFK---------------GHSDYLHCIVARNSTNQIVTGSE- 221 (279)
Q Consensus 164 ~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~---------------~~~~~i~~i~~~~~~~~l~~~~~- 221 (279)
+|++.+++.++++.-.+ ..|+.++.. ++.+..+. ......-+|+++|+|+.|+++.+
T Consensus 89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~ 167 (326)
T PF13449_consen 89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMES 167 (326)
T ss_pred HeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECc
Confidence 78887777777766666 788888876 66555441 12345789999999996666543
Q ss_pred ----CCe---------EEE--EeCCC-CceEEEecCCccc-cccCcceeeeEEEEcCCCCEEEE
Q 023643 222 ----DGT---------ARI--WDCKS-GKCIKVIDPVKDK-QLKGVISCVSCITLDASESWLVR 268 (279)
Q Consensus 222 ----d~~---------i~v--wd~~~-~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~ 268 (279)
|+. +++ ||..+ ++....+...... ........++.+.+-+++++|+-
T Consensus 168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 221 344 45444 3222222111000 00014567888999999887664
No 457
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.22 E-value=11 Score=33.95 Aligned_cols=160 Identities=12% Similarity=0.098 Sum_probs=84.0
Q ss_pred CCccCeEEEEec---CC-CCceEEEEeeCCCcEEEeecCCCccCccee-eeccCcccceEEeecCCCCCccccCCCCCCc
Q 023643 88 GHDGPAYDVKFY---GG-NEDALLLSCGDDGRICGWRWKEFTESKVPI-NLQGNHVKPVLDLVNHQHKGPWGALSPVPEN 162 (279)
Q Consensus 88 ~h~~~v~~~~~~---~~-~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 162 (279)
.-..+|..|+|. .. +....++..-....+.|+...-.+...... ....-...++..+......+ ...
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg--------~~~ 148 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGG--------FPH 148 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCC--------Ccc
Confidence 456789999998 21 110134555556778887743211100000 00000112222222111111 134
Q ss_pred eeEEEcCC-CCeEEEecCCCeEEEEecCCC-----cEEEEeecCCc----------ceEEEEEcCCCcEEEEecCCCeEE
Q 023643 163 NAIAVDPQ-GGAIFSAAGDSCAYCWDVESS-----RIKMVFKGHSD----------YLHCIVARNSTNQIVTGSEDGTAR 226 (279)
Q Consensus 163 ~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~----------~i~~i~~~~~~~~l~~~~~d~~i~ 226 (279)
..++|+|. ...||+....|...|||+... ........+.+ .-..+.|.++.+.|+.++ ...+.
T Consensus 149 aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~l~ 227 (765)
T PF10214_consen 149 ADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSKLM 227 (765)
T ss_pred ceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCceE
Confidence 68999984 458999999999999999211 11111111122 223677888777777765 44578
Q ss_pred EEeCCCCceEEEecCCccccccCcceeeeEEEEcCC
Q 023643 227 IWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS 262 (279)
Q Consensus 227 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 262 (279)
++|+++......+-. ......|..+.-+|.
T Consensus 228 ~~d~~~~~~~~~l~~------~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 228 LIDFESNWQTEYLVT------AKTWSWILDVKRSPD 257 (765)
T ss_pred EEECCCCCccchhcc------CCChhheeeEEecCC
Confidence 889887655332211 233456777776665
No 458
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=91.10 E-value=0.83 Score=21.64 Aligned_cols=25 Identities=16% Similarity=0.449 Sum_probs=21.2
Q ss_pred eEEEecCCCeEEEEecCCCcEEEEe
Q 023643 173 AIFSAAGDSCAYCWDVESSRIKMVF 197 (279)
Q Consensus 173 ~l~~~~~d~~i~i~d~~~~~~~~~~ 197 (279)
.+++++.++.++.+|.++++.+.++
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 6788888999999999999887653
No 459
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=90.88 E-value=6.1 Score=30.42 Aligned_cols=142 Identities=13% Similarity=0.036 Sum_probs=85.3
Q ss_pred CeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC
Q 023643 92 PAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG 171 (279)
Q Consensus 92 ~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 171 (279)
-+..+.++.+ +...+..+.-++|.|+.+..+......+.-.+. -.++.. .|
T Consensus 88 l~~Dv~vse~----yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gy-----------------------aygv~v--sG 138 (370)
T COG5276 88 LFADVRVSEE----YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGY-----------------------AYGVYV--SG 138 (370)
T ss_pred hhheeEeccc----EEEEEcCCCceEEEeccCCCCcceeccccCCce-----------------------EEEEEe--cC
Confidence 3455666543 777778888899999976544333333222111 234444 57
Q ss_pred CeEEEecCCCeEEEEecCCC---cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCcccccc
Q 023643 172 GAIFSAAGDSCAYCWDVESS---RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLK 248 (279)
Q Consensus 172 ~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 248 (279)
++.+++..|.-..++|+.+. .+...+.........++.| |++-..+..|+-+.+-|+.......-+. + .
T Consensus 139 n~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~-~-----~ 210 (370)
T COG5276 139 NYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIG-S-----Y 210 (370)
T ss_pred CEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEE-E-----E
Confidence 88888886666778888654 3344444444444667766 7777777789989999987643322221 0 1
Q ss_pred CcceeeeEEEEcCCCCEEEEEc
Q 023643 249 GVISCVSCITLDASESWLVRVR 270 (279)
Q Consensus 249 ~~~~~v~~~~~~~~~~~l~~~~ 270 (279)
.....+.++..+++.-+++...
T Consensus 211 n~g~g~~sv~vsdnr~y~vvy~ 232 (370)
T COG5276 211 NTGPGTYSVSVSDNRAYLVVYD 232 (370)
T ss_pred ecCCceEEEEecCCeeEEEEcc
Confidence 1122567777777766655543
No 460
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.70 E-value=5 Score=29.16 Aligned_cols=101 Identities=12% Similarity=0.024 Sum_probs=59.8
Q ss_pred cCCCCeEEEecCCCeEEEEecCCCcEEEEeec--CC---cceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCC
Q 023643 168 DPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG--HS---DYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPV 242 (279)
Q Consensus 168 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~---~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~ 242 (279)
..++..|+.+....++++-|..+.....+..- .. ..+..+.| -+|...+-.-.+..|...|..+|+.+..++..
T Consensus 137 t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~sGrV~~widlS 215 (262)
T COG3823 137 TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDPDSGRVVAWIDLS 215 (262)
T ss_pred ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcCCCCcEEEEEEcc
Confidence 34556677777777888888776544333221 11 12233344 25666665556666777788888877776533
Q ss_pred cc----ccccCcceeeeEEEEcCCC-CEEEEE
Q 023643 243 KD----KQLKGVISCVSCITLDASE-SWLVRV 269 (279)
Q Consensus 243 ~~----~~~~~~~~~v~~~~~~~~~-~~l~~~ 269 (279)
.. ..-..+..-.+.+++.|++ ++++||
T Consensus 216 ~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 216 GLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CCchhcCccccccccccceeecCcCCeEEEec
Confidence 21 0113345577899999987 666666
No 461
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.49 E-value=1.4 Score=22.26 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=22.7
Q ss_pred CCCcEEEE-ecCCCeEEEEeCCCCceEEEec
Q 023643 211 NSTNQIVT-GSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 211 ~~~~~l~~-~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
|++++|++ .-.+++|.++|..+++.+..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 45665554 4468899999999988888774
No 462
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.15 E-value=9.4 Score=31.41 Aligned_cols=104 Identities=12% Similarity=0.036 Sum_probs=62.1
Q ss_pred CCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEE
Q 023643 88 GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAV 167 (279)
Q Consensus 88 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 167 (279)
..+++|.++.|+++.+ .|+.--.|.+|.+++....+.. ....... .. ....|....|
T Consensus 64 ~d~G~I~SIkFSlDnk--ilAVQR~~~~v~f~nf~~d~~~-l~~~~~c-k~-------------------k~~~IlGF~W 120 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNK--ILAVQRTSKTVDFCNFIPDNSQ-LEYTQEC-KT-------------------KNANILGFCW 120 (657)
T ss_pred cCCCceeEEEeccCcc--eEEEEecCceEEEEecCCCchh-hHHHHHh-cc-------------------CcceeEEEEE
Confidence 3567999999999998 9999999999999986321111 1111000 00 0012567778
Q ss_pred cCCCCeEEEecCCCeEEEEecCC-CcEEEEeecCCcceEEEEEcCCCcEE
Q 023643 168 DPQGGAIFSAAGDSCAYCWDVES-SRIKMVFKGHSDYLHCIVARNSTNQI 216 (279)
Q Consensus 168 ~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l 216 (279)
+.. .-++..+..| +-+|-... .+.++..+.|...|.=-.|.++.+.+
T Consensus 121 ~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~ 168 (657)
T KOG2377|consen 121 TSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVI 168 (657)
T ss_pred ecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceE
Confidence 765 4455554434 55554432 34555556676667666777765553
No 463
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.15 E-value=6.8 Score=32.76 Aligned_cols=92 Identities=11% Similarity=0.019 Sum_probs=47.4
Q ss_pred cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccc-eeee-ccccccccCCccCeEEEEecCCC-
Q 023643 26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQ-QLLG-IEPDGFLHGHDGPAYDVKFYGGN- 102 (279)
Q Consensus 26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~h~~~v~~~~~~~~~- 102 (279)
-.|..+..++ .|..++-.+.+|.+..+=.........++-...... .+.. +..+.+-. ..-.+...+|+|+.
T Consensus 104 feV~~vl~s~----~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss-~~ltl~Qa~WHP~S~ 178 (741)
T KOG4460|consen 104 FEVYQVLLSP----TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSS-TSLTLKQAAWHPSSI 178 (741)
T ss_pred EEEEEEEecC----CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccC-CceeeeeccccCCcc
Confidence 3567777788 899999999999765544332111111100000000 0000 11111111 12236677888875
Q ss_pred -CceEEEEeeCCCcEEEeecCC
Q 023643 103 -EDALLLSCGDDGRICGWRWKE 123 (279)
Q Consensus 103 -~~~~l~s~~~dg~i~iw~~~~ 123 (279)
. ..|..-+.|..||+|++..
T Consensus 179 ~D-~hL~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 179 LD-PHLVLLTSDNVIRIYSLSE 199 (741)
T ss_pred CC-ceEEEEecCcEEEEEecCC
Confidence 2 2667777788888888754
No 464
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.11 E-value=7 Score=36.13 Aligned_cols=32 Identities=22% Similarity=0.422 Sum_probs=27.3
Q ss_pred ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCC
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPS 60 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 60 (279)
......++|+| ...++|.+..+|.|+++-...
T Consensus 35 ~~~~~~~afD~----~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 35 PSTPSALAFDP----TQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCCcceeecc----ccceEEEEEecccEEEecccc
Confidence 34667789999 889999999999999998764
No 465
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=89.86 E-value=14 Score=33.10 Aligned_cols=61 Identities=16% Similarity=0.275 Sum_probs=42.7
Q ss_pred CCeEEEEecCCCcEEEEeecCCcce---------EEEEEcC-CCc---EEEEecCCCeEEEEeCCCCceEEEec
Q 023643 180 DSCAYCWDVESSRIKMVFKGHSDYL---------HCIVARN-STN---QIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 180 d~~i~i~d~~~~~~~~~~~~~~~~i---------~~i~~~~-~~~---~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
.+.|.-.|.++++.+-.++.....+ .=+.+.. +|+ .++.++.+|.+.++|.++|+.+..++
T Consensus 413 ~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 413 SSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred cceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 3667888999999988886521111 1112222 453 78999999999999999999887653
No 466
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=89.59 E-value=15 Score=33.00 Aligned_cols=75 Identities=12% Similarity=0.122 Sum_probs=50.9
Q ss_pred cceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEe----cCCc------ccccc-CcceeeeEEEEcCCCCEEEEEc
Q 023643 202 DYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI----DPVK------DKQLK-GVISCVSCITLDASESWLVRVR 270 (279)
Q Consensus 202 ~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~----~~~~------~~~~~-~~~~~v~~~~~~~~~~~l~~~~ 270 (279)
..|.+++...-+..++..-.||+|.++|..+.+.+... .... +..+. .....+..++|||.+..++.-.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 45677777666788999999999999999887666554 2111 00010 0111445689999999898888
Q ss_pred CcceEE
Q 023643 271 ATNYVI 276 (279)
Q Consensus 271 ~d~~i~ 276 (279)
.+|.+.
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 888743
No 467
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=89.50 E-value=1.6 Score=21.68 Aligned_cols=27 Identities=15% Similarity=0.414 Sum_probs=23.3
Q ss_pred eEEEecCCCeEEEEecCCCcEEEEeec
Q 023643 173 AIFSAAGDSCAYCWDVESSRIKMVFKG 199 (279)
Q Consensus 173 ~l~~~~~d~~i~i~d~~~~~~~~~~~~ 199 (279)
.++.++.+|.|+-.|.++|+.+-.++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 466779999999999999999988864
No 468
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=89.44 E-value=1.2 Score=20.28 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=21.1
Q ss_pred cceEEEEECCCCCCCCCEEEEecCCCcEEEEe
Q 023643 26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYS 57 (279)
Q Consensus 26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~ 57 (279)
+.|.+++..+ .+++++.+.+.+|+|.
T Consensus 2 E~i~aia~g~------~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGD------SWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccC------CEEEEEeCCCeEEecC
Confidence 4577888776 7899999999999984
No 469
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.40 E-value=6.6 Score=28.58 Aligned_cols=127 Identities=17% Similarity=0.163 Sum_probs=64.5
Q ss_pred ecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCcc
Q 023643 47 ASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTE 126 (279)
Q Consensus 47 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 126 (279)
.-.+|.-..+|.++. +.+..+. -++.-..++ .++. .|+.++...+++.-|.++...
T Consensus 107 Tw~egvaf~~d~~t~-------------------~~lg~~~-y~GeGWgLt--~d~~--~LimsdGsatL~frdP~tfa~ 162 (262)
T COG3823 107 TWKEGVAFKYDADTL-------------------EELGRFS-YEGEGWGLT--SDDK--NLIMSDGSATLQFRDPKTFAE 162 (262)
T ss_pred EeccceeEEEChHHh-------------------hhhcccc-cCCcceeee--cCCc--ceEeeCCceEEEecCHHHhhh
Confidence 356778888888873 3333332 223334444 3444 466555566777777665433
Q ss_pred Ccceeee-ccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEe--------
Q 023643 127 SKVPINL-QGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVF-------- 197 (279)
Q Consensus 127 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-------- 197 (279)
...+... .+..... ++-+.|- +|...+-.=.+..|...|..+|+.+.-+
T Consensus 163 ~~~v~VT~~g~pv~~---------------------LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~ 220 (262)
T COG3823 163 LDTVQVTDDGVPVSK---------------------LNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKE 220 (262)
T ss_pred cceEEEEECCeeccc---------------------ccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchh
Confidence 3332222 2211111 2233332 3433333333444555555566554433
Q ss_pred ----ecCCcceEEEEEcCCC-cEEEEe
Q 023643 198 ----KGHSDYLHCIVARNST-NQIVTG 219 (279)
Q Consensus 198 ----~~~~~~i~~i~~~~~~-~~l~~~ 219 (279)
..|.+-...+++.|++ +++++|
T Consensus 221 ~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 221 LNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cCccccccccccceeecCcCCeEEEec
Confidence 2345567889999976 556665
No 470
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=89.31 E-value=9.6 Score=30.29 Aligned_cols=71 Identities=10% Similarity=0.019 Sum_probs=43.2
Q ss_pred cceEEEEEcC-------CCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcce
Q 023643 202 DYLHCIVARN-------STNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNY 274 (279)
Q Consensus 202 ~~i~~i~~~~-------~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 274 (279)
..+..+.|.. .+.++++.-..+.|....+..+..+..... .+......+..+++.|||.++++...+|.
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~ 328 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEE----FLGGFGGRPRDVAQGPDGALYVSDDSDGK 328 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE----ECTTSSS-EEEEEEETTSEEEEEE-TTTT
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEE----ccccCCCCceEEEEcCCCeEEEEECCCCe
Confidence 4556666653 355677666677788777765533222110 01334447899999999999998888887
Q ss_pred EE
Q 023643 275 VI 276 (279)
Q Consensus 275 i~ 276 (279)
|.
T Consensus 329 iy 330 (331)
T PF07995_consen 329 IY 330 (331)
T ss_dssp EE
T ss_pred Ee
Confidence 74
No 471
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.97 E-value=2.9 Score=30.43 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=40.2
Q ss_pred CeEEEecCCCeEEEEecCC--CcEEEEeecCCcceEEEEEcCCCcEEEEecC---C---CeEEEE
Q 023643 172 GAIFSAAGDSCAYCWDVES--SRIKMVFKGHSDYLHCIVARNSTNQIVTGSE---D---GTARIW 228 (279)
Q Consensus 172 ~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---d---~~i~vw 228 (279)
..|+.+.....|.+|++.+ .+++..|.. -+.|..+.++..|+||++-=. . ..+|+|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 3454546678899999883 456667764 378999999999999998532 2 256775
No 472
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=88.68 E-value=1.6 Score=20.60 Aligned_cols=26 Identities=31% Similarity=0.458 Sum_probs=21.5
Q ss_pred cEEEEecCCCeEEEEeCCCCceEEEe
Q 023643 214 NQIVTGSEDGTARIWDCKSGKCIKVI 239 (279)
Q Consensus 214 ~~l~~~~~d~~i~vwd~~~~~~~~~~ 239 (279)
..++.++.+|.+..+|.++|+.+..+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 36777889999999999999887654
No 473
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=88.12 E-value=10 Score=29.24 Aligned_cols=76 Identities=13% Similarity=0.134 Sum_probs=47.8
Q ss_pred CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEec------CCCeEEEEeCCCCceEEEecCCccccccCcceee
Q 023643 181 SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS------EDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCV 254 (279)
Q Consensus 181 ~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v 254 (279)
..|++||..+.+-..--.+-.+.|++|.|..+.+.++.|. ....+..||+.+.... .+..... ..-..+|
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s---~~ipgpv 91 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSS---NSIPGPV 91 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCccc---ccCCCcE
Confidence 4599999877655554444567899999986667777664 4556889998766432 2321000 1123567
Q ss_pred eEEEEc
Q 023643 255 SCITLD 260 (279)
Q Consensus 255 ~~~~~~ 260 (279)
+.+.+.
T Consensus 92 ~a~~~~ 97 (281)
T PF12768_consen 92 TALTFI 97 (281)
T ss_pred EEEEee
Confidence 777664
No 474
>PRK10115 protease 2; Provisional
Probab=88.09 E-value=18 Score=32.08 Aligned_cols=30 Identities=13% Similarity=0.064 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCCCCCEEEEecCC-----CcEEEEeCCC
Q 023643 27 TVFRTVWGPSKDGSPDTIVIASSD-----GSITSYSIPS 60 (279)
Q Consensus 27 ~v~~~~~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~ 60 (279)
.+..+.++| ++++|+.+... -.|++.|+.+
T Consensus 128 ~l~~~~~Sp----dg~~la~~~d~~G~E~~~l~v~d~~t 162 (686)
T PRK10115 128 TLGGMAITP----DNTIMALAEDFLSRRQYGIRFRNLET 162 (686)
T ss_pred EEeEEEECC----CCCEEEEEecCCCcEEEEEEEEECCC
Confidence 366678899 88888775332 2578888876
No 475
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.71 E-value=12 Score=35.12 Aligned_cols=169 Identities=11% Similarity=0.085 Sum_probs=81.4
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEEC-CCCC---CCCCEEEEecCCCcEEEEeCCCCCcccccccCCccccee
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWG-PSKD---GSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQL 77 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~---~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 77 (279)
|..+.+|+.++... ...+.+-...|..+..- |.+. +.=++++....--.|.++-+.-.+.......
T Consensus 98 Dn~L~lWny~~~~e--~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~-------- 167 (1311)
T KOG1900|consen 98 DNNLFLWNYESDNE--LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSI-------- 167 (1311)
T ss_pred CCeEEEEEcCCCCc--cccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccc--------
Confidence 77899999877432 44444555667666542 2110 0223333333334566766543221111000
Q ss_pred eeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceee--eccCcccceEEeecCCCCCcccc
Q 023643 78 LGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPIN--LQGNHVKPVLDLVNHQHKGPWGA 155 (279)
Q Consensus 78 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 155 (279)
......+....-.|.++....+|. +.-+|.|| .+|.+-.......... -+-...+.+.....+. -...
T Consensus 168 --f~~~~~i~~dg~~V~~I~~t~nGR---IF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs---~~~~ 237 (1311)
T KOG1900|consen 168 --FNTSFKISVDGVSVNCITYTENGR---IFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS---LLSV 237 (1311)
T ss_pred --cccceeeecCCceEEEEEeccCCc---EEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhh---hhcC
Confidence 000011222244688888777775 55555666 4555422111100000 0000000000000000 0000
Q ss_pred -CCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCC
Q 023643 156 -LSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVES 190 (279)
Q Consensus 156 -~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 190 (279)
.....+|..+.+......+++-+..++|.+||+..
T Consensus 238 ~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 238 PGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 12234689999998888999999999999999975
No 476
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.66 E-value=6.4 Score=26.32 Aligned_cols=100 Identities=8% Similarity=0.065 Sum_probs=59.3
Q ss_pred EEEcCCCCeEEEecCCCeEEEEecCCC--------cEEEEeecCCcceEEEEEcC-----CCcEEEEecCCCeEEEEeCC
Q 023643 165 IAVDPQGGAIFSAAGDSCAYCWDVESS--------RIKMVFKGHSDYLHCIVARN-----STNQIVTGSEDGTARIWDCK 231 (279)
Q Consensus 165 ~~~~~~~~~l~~~~~d~~i~i~d~~~~--------~~~~~~~~~~~~i~~i~~~~-----~~~~l~~~~~d~~i~vwd~~ 231 (279)
-.|......|+.++.-++|.|++.... ..++.+. -...|++++-.+ ....|+.|+ ...|..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 356666678888888999999987633 2334343 345677775433 245566665 5568899998
Q ss_pred CCceEEEecCCccccccCcceeeeEEEEcC----CCCEEEEEcCcceEE
Q 023643 232 SGKCIKVIDPVKDKQLKGVISCVSCITLDA----SESWLVRVRATNYVI 276 (279)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~ 276 (279)
...-+..- .-...|.++.+-. +.+++++|+ +..|.
T Consensus 82 ~N~d~Fyk---------e~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~ 120 (136)
T PF14781_consen 82 NNSDLFYK---------EVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQ 120 (136)
T ss_pred cCchhhhh---------hCccceeEEEEEecCCCCCcEEEECc-eEEEE
Confidence 76554332 2234566666532 234444543 34443
No 477
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=87.57 E-value=20 Score=31.92 Aligned_cols=70 Identities=13% Similarity=0.169 Sum_probs=38.7
Q ss_pred eeEEEcCCCCeEEEecCCC-----eEEEEecCCCcEEEEe---ecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCc
Q 023643 163 NAIAVDPQGGAIFSAAGDS-----CAYCWDVESSRIKMVF---KGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGK 234 (279)
Q Consensus 163 ~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~ 234 (279)
..++|-|+|..+++-..|| .|.++.. +|-.-..+ .+....+..++|+-....++ .+..+.|++|-..+-.
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~s~vla-v~~~n~~~lwttkNyh 327 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLLSTVLA-VAEGNLLKLWTTKNYH 327 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEcc-CCcccCCccccCCchhhhhhhhhhHHHHHHH-HhhcceEEEEEccceE
Confidence 4689999999999876554 3455542 22111111 11233445556654433333 3456779999766543
No 478
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=87.18 E-value=15 Score=30.00 Aligned_cols=82 Identities=12% Similarity=0.051 Sum_probs=49.7
Q ss_pred cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643 24 LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE 103 (279)
Q Consensus 24 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 103 (279)
....|.++.|.- |--+++|--...-+.+.|+...+.... +..++ -+-.+--.+|-+.
T Consensus 426 ~gERIYAvRf~g----dv~yiVTfrqtDPlfviDlsNPenPkv----------------lGeLK---IPGfS~YLHpige 482 (603)
T COG4880 426 PGERIYAVRFVG----DVLYIVTFRQTDPLFVIDLSNPENPKV----------------LGELK---IPGFSEYLHPIGE 482 (603)
T ss_pred CCceEEEEEEeC----ceEEEEEEeccCceEEEEcCCCCCCce----------------eEEEe---cCCchhhccccCC
Confidence 457899999988 777888876666788888876432211 11111 1112223456555
Q ss_pred ceEEEEeeCCCcEE--EeecCCCccCc
Q 023643 104 DALLLSCGDDGRIC--GWRWKEFTESK 128 (279)
Q Consensus 104 ~~~l~s~~~dg~i~--iw~~~~~~~~~ 128 (279)
+.+|-.|..+|.++ ++|+.+....+
T Consensus 483 n~~lGvG~~~g~vKiSLFdiSdl~~Pk 509 (603)
T COG4880 483 NRLLGVGAYQGGVKISLFDISDLAAPK 509 (603)
T ss_pred CcEEEeecccCCceEEEEeccCCCCch
Confidence 44677777777654 78887654433
No 479
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=86.97 E-value=5.3 Score=24.61 Aligned_cols=41 Identities=5% Similarity=0.131 Sum_probs=27.6
Q ss_pred cCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEe
Q 023643 178 AGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTG 219 (279)
Q Consensus 178 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 219 (279)
..+|.+..||..+++....+.+ -.....|++++++.+++.+
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEE
Confidence 3468999999998876554443 3456889999999876654
No 480
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=86.90 E-value=13 Score=28.95 Aligned_cols=90 Identities=14% Similarity=0.176 Sum_probs=60.3
Q ss_pred CCCCeEEEecCCCeEEEEecCCCcEEEEee--cCCcceEEEEEcC------CCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 169 PQGGAIFSAAGDSCAYCWDVESSRIKMVFK--GHSDYLHCIVARN------STNQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 169 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~------~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
++...=+.|..-|.|-+||+. ++.++.+. +.-...+.|+..| .+.+|+---.||+|..||..+++.+..+.
T Consensus 210 ~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 210 ADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred CcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 333333445556899999986 88888774 2334567787765 35666666679999999999999888886
Q ss_pred CCccccccCcceeeeEEEEcC
Q 023643 241 PVKDKQLKGVISCVSCITLDA 261 (279)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~ 261 (279)
......+. ...++.++|..
T Consensus 289 ~~~G~pi~--i~GLWgL~fGn 307 (336)
T TIGR03118 289 DPDNHPVK--VDGLWSLTFGN 307 (336)
T ss_pred CCCCCeEE--ecCeEEeeeCC
Confidence 54321111 23568888864
No 481
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=86.87 E-value=2.6 Score=20.93 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=22.9
Q ss_pred EEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 215 QIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 215 ~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
.+..++.+|.|.-.|.++|+.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 355669999999999999999988854
No 482
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=86.77 E-value=15 Score=29.69 Aligned_cols=190 Identities=15% Similarity=0.181 Sum_probs=0.0
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCC----CcEEEEeCCCCCcccccccCCccccee
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSD----GSITSYSIPSCISKLPLGLSNSKVQQL 77 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~ 77 (279)
.+-+.+||+++ +.++.+..-.-.-..+.+.-.......-||+++.- .+|++|.+...
T Consensus 77 ~~GL~VYdL~G---k~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~---------------- 137 (381)
T PF02333_consen 77 KGGLYVYDLDG---KELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPD---------------- 137 (381)
T ss_dssp TTEEEEEETTS----EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETT----------------
T ss_pred CCCEEEEcCCC---cEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCC----------------
Q ss_pred eeccccccccCCccCe---------EEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCC
Q 023643 78 LGIEPDGFLHGHDGPA---------YDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQ 148 (279)
Q Consensus 78 ~~~~~~~~~~~h~~~v---------~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (279)
...+..+.....++ .|+--+|.....+++..+.+|.+..|.+...........+-......-
T Consensus 138 --~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s------- 208 (381)
T PF02333_consen 138 --TGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS------- 208 (381)
T ss_dssp --TTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-------
T ss_pred --CCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC-------
Q ss_pred CCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecC-----CCcEEEEeec--CCcceEEEEE----cCCCcEEE
Q 023643 149 HKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVE-----SSRIKMVFKG--HSDYLHCIVA----RNSTNQIV 217 (279)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-----~~~~~~~~~~--~~~~i~~i~~----~~~~~~l~ 217 (279)
++..+........|+.+-.+.-|.-|+.+ .++.+....+ ....|-.|+. ...|.+|+
T Consensus 209 ------------Q~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLiv 276 (381)
T PF02333_consen 209 ------------QPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIV 276 (381)
T ss_dssp -------------EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEE
T ss_pred ------------cceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEE
Q ss_pred EecCCCeEEEEeCC
Q 023643 218 TGSEDGTARIWDCK 231 (279)
Q Consensus 218 ~~~~d~~i~vwd~~ 231 (279)
+.-.+++..||+.+
T Consensus 277 SsQG~~sf~Vy~r~ 290 (381)
T PF02333_consen 277 SSQGDNSFAVYDRE 290 (381)
T ss_dssp EEGGGTEEEEEESS
T ss_pred EcCCCCeEEEEecC
No 483
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.52 E-value=18 Score=30.21 Aligned_cols=62 Identities=13% Similarity=0.199 Sum_probs=38.1
Q ss_pred cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccccccc-CCccCeEEEEecCCC
Q 023643 24 LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLH-GHDGPAYDVKFYGGN 102 (279)
Q Consensus 24 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~ 102 (279)
.-..-+.|+|.| ++++|++--..|.|++++..+....... .-+ .... .-.+....|+++|+-
T Consensus 28 GL~~Pw~maflP----DG~llVtER~~G~I~~v~~~~~~~~~~~------------~l~-~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGP----DNQLWVTERATGKILRVNPETGEVKVVF------------TLP-EIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcC----CCeEEEEEecCCEEEEEeCCCCceeeee------------cCC-ceeccCCCCceeeEEECCCc
Confidence 345678999999 8887777655799999876543211100 000 0111 125668999999873
No 484
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=85.35 E-value=14 Score=28.57 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=36.8
Q ss_pred CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEec------CCCcEEEEeCCC
Q 023643 3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS------SDGSITSYSIPS 60 (279)
Q Consensus 3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~------~dg~i~iw~~~~ 60 (279)
-.|.+||.++.+...+- ..-.+.|+++.|.. +.++++.|. ....+..||..+
T Consensus 16 ~~lC~yd~~~~qW~~~g--~~i~G~V~~l~~~~----~~~Llv~G~ft~~~~~~~~la~yd~~~ 73 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPG--NGISGTVTDLQWAS----NNQLLVGGNFTLNGTNSSNLATYDFKN 73 (281)
T ss_pred CEEEEEECCCCEeecCC--CCceEEEEEEEEec----CCEEEEEEeeEECCCCceeEEEEecCC
Confidence 45788998887653332 22457899999987 677777774 455688888876
No 485
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=85.24 E-value=19 Score=29.47 Aligned_cols=107 Identities=9% Similarity=0.012 Sum_probs=62.4
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCc-----EEEEeec--CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCc
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSR-----IKMVFKG--HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGK 234 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~ 234 (279)
+..+.+.+++..++++ ..|.+.. ....++ ....... ....+..+.|.+++..+++| ..|.+.... ..|+
T Consensus 283 l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~ 358 (398)
T PLN00033 283 IQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGK 358 (398)
T ss_pred eeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCc
Confidence 6788999888877665 4565443 333343 2222221 12358889998877766555 677666543 4455
Q ss_pred eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 235 CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
.-...... ..-...+..+.|.++++.+++| .+|.|.-|
T Consensus 359 tW~~~~~~-----~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 359 SWKRDKGA-----DNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred ceeEcccc-----CCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 43333210 1223457789998877766665 66777654
No 486
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=85.21 E-value=9.5 Score=31.37 Aligned_cols=174 Identities=10% Similarity=0.121 Sum_probs=90.9
Q ss_pred eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccc-cC-CccCeE-EE
Q 023643 20 EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFL-HG-HDGPAY-DV 96 (279)
Q Consensus 20 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~-~~ 96 (279)
.+......|..+-..| |++.|..-+. .++.++++.+..... +.+... .+ ....|+ .+
T Consensus 215 ~L~~~~~~v~qllL~P----dg~~LYv~~g-~~~~v~~L~~r~l~~---------------rkl~~dspg~~~~~Vte~l 274 (733)
T COG4590 215 LLSVPFSDVSQLLLTP----DGKTLYVRTG-SELVVALLDKRSLQI---------------RKLVDDSPGDSRHQVTEQL 274 (733)
T ss_pred hcCCCccchHhhEECC----CCCEEEEecC-CeEEEEeecccccch---------------hhhhhcCCCchHHHHHHHH
Confidence 3444556778888889 8998877655 578899987642111 000000 00 001111 11
Q ss_pred EecCCCCceEEEEeeCCCcEEEe-ecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEE
Q 023643 97 KFYGGNEDALLLSCGDDGRICGW-RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF 175 (279)
Q Consensus 97 ~~~~~~~~~~l~s~~~dg~i~iw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 175 (279)
.....+. .+..++.||-|.-| |.+..... +...+..+.... ..+..+.-..+.+-++
T Consensus 275 ~lL~Gg~--SLLv~~~dG~vsQWFdvr~~~~p---------~l~h~R~f~l~p-----------a~~~~l~pe~~rkgF~ 332 (733)
T COG4590 275 YLLSGGF--SLLVVHEDGLVSQWFDVRRDGQP---------HLNHIRNFKLAP-----------AEVQFLLPETNRKGFY 332 (733)
T ss_pred HHHhCce--eEEEEcCCCceeeeeeeecCCCC---------cceeeeccccCc-----------ccceeeccccccceEE
Confidence 1222343 67788889988866 44322111 100000000000 0112222222334566
Q ss_pred EecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEE
Q 023643 176 SAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIK 237 (279)
Q Consensus 176 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~ 237 (279)
+-+..|++..+.....+.+- ++.-...+.-+++||.+.++++- ..|.|+++.+.+..+.-
T Consensus 333 ~l~~~G~L~~f~st~~~~lL-~~~~~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Pei 392 (733)
T COG4590 333 SLYRNGTLQSFYSTSEKLLL-FERAYQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRNPEI 392 (733)
T ss_pred EEcCCCceeeeecccCccee-hhhhhcCcceeeeCcccchheee-cCCceEEEEecCCCCCc
Confidence 67777877776654433332 22223356778999999998875 46679999887755433
No 487
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=84.84 E-value=18 Score=29.22 Aligned_cols=69 Identities=16% Similarity=0.242 Sum_probs=46.0
Q ss_pred CeEEEecCCCeEEEEecCCCcEEEEeecCC--cceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 172 GAIFSAAGDSCAYCWDVESSRIKMVFKGHS--DYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 172 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
..++++..+|.|.-.|..+++.+.....-. ..+..-.+..+|+ ++.++.++.+..+|.++|+.+.....
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~ 139 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNV 139 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEec
Confidence 356666788899999999888765433221 1122212222555 77788899999999989998887753
No 488
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=84.23 E-value=0.69 Score=39.17 Aligned_cols=89 Identities=11% Similarity=0.127 Sum_probs=58.0
Q ss_pred EEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCe-EEEEeCCCCceEEEecCCccccc---cC-cceeeeEE
Q 023643 183 AYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT-ARIWDCKSGKCIKVIDPVKDKQL---KG-VISCVSCI 257 (279)
Q Consensus 183 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~---~~-~~~~v~~~ 257 (279)
+.+=|..+...+..|+.|..++..++|.+.+..+++++..|. |.++. ....+.+......... .+ -...+..+
T Consensus 297 vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfR--imet~~t~~~~~qs~~~s~ra~t~aviqdi 374 (788)
T KOG2109|consen 297 VIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFR--IMETVCTVNVSDQSLVVSPRANTAAVIQDI 374 (788)
T ss_pred EEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEE--eccccccccccccccccchhcchHHHHHHH
Confidence 555677777888889999999999999999999999987773 44443 3332222221110000 11 12345667
Q ss_pred EEcCCCCEEEEEcCcc
Q 023643 258 TLDASESWLVRVRATN 273 (279)
Q Consensus 258 ~~~~~~~~l~~~~~d~ 273 (279)
+|+....+++.++.+|
T Consensus 375 cfs~~s~~r~~gsc~G 390 (788)
T KOG2109|consen 375 CFSEVSTIRTAGSCEG 390 (788)
T ss_pred hhhhhcceEeecccCC
Confidence 8888888888777665
No 489
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=83.37 E-value=33 Score=30.73 Aligned_cols=73 Identities=8% Similarity=0.077 Sum_probs=47.5
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec---CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG---HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV 238 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 238 (279)
+.+.++..| ++.++.+|.|.++...+......+.. |...|++|.+...+-+++..+.|- ++.++..+-.-.+.
T Consensus 629 vrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~-~rlfhtetl~hlqd 704 (925)
T KOG3522|consen 629 VRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDE-ERLFHTETLWHLQD 704 (925)
T ss_pred ccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCE-EEEecccccCCccc
Confidence 566666543 55677799999999887655555443 456789999887776666665443 55555555443333
No 490
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=82.26 E-value=16 Score=33.02 Aligned_cols=59 Identities=7% Similarity=0.017 Sum_probs=41.1
Q ss_pred eEEEecCCCeEEEEecCCCcEEEE-eecCCcceEEEEEcCCCcEEEE-ecCCC-----eEEEEeCCC
Q 023643 173 AIFSAAGDSCAYCWDVESSRIKMV-FKGHSDYLHCIVARNSTNQIVT-GSEDG-----TARIWDCKS 232 (279)
Q Consensus 173 ~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~-~~~d~-----~i~vwd~~~ 232 (279)
+.++....+.|.+-|.....+... ++ +..+|.+-+|||||+.|+- .+.++ .|++-|+++
T Consensus 321 iAfv~~~~~~L~~~D~dG~n~~~ve~~-~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t 386 (912)
T TIGR02171 321 LAFRNDVTGNLAYIDYTKGASRAVEIE-DTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNA 386 (912)
T ss_pred EEEEEcCCCeEEEEecCCCCceEEEec-CCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhc
Confidence 334333335788888776555544 44 6788889999999999987 55554 488888876
No 491
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=81.32 E-value=4 Score=18.64 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=15.8
Q ss_pred eEEEEEcCCCcEEEEecCCCeEEEE
Q 023643 204 LHCIVARNSTNQIVTGSEDGTARIW 228 (279)
Q Consensus 204 i~~i~~~~~~~~l~~~~~d~~i~vw 228 (279)
...++.+++|+.+++=+....|++|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 3566666667766666666666553
No 492
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=80.94 E-value=3.4 Score=36.08 Aligned_cols=34 Identities=12% Similarity=0.299 Sum_probs=28.1
Q ss_pred cceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce
Q 023643 202 DYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC 235 (279)
Q Consensus 202 ~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~ 235 (279)
..++++.-+|.+..++.++.||+|++|+.-....
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q 48 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ 48 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccch
Confidence 4567788889999999999999999999765443
No 493
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=80.53 E-value=25 Score=31.36 Aligned_cols=50 Identities=4% Similarity=-0.062 Sum_probs=29.0
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCC
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNS 212 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~ 212 (279)
...++|+-....++++ ....+.+|-..+-.-.......-..+.-+.|+|.
T Consensus 298 ~~~~~wn~~s~vlav~-~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe 347 (1243)
T COG5290 298 AFLENWNLLSTVLAVA-EGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPE 347 (1243)
T ss_pred hhhhhhhHHHHHHHHh-hcceEEEEEccceEEEEEEeecCCCcceeeeccc
Confidence 4566776655555544 3577999987654333222223344566778885
No 494
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=80.15 E-value=11 Score=23.18 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=27.0
Q ss_pred EecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEE
Q 023643 218 TGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV 269 (279)
Q Consensus 218 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 269 (279)
.+..+|.+.-||..+++..-.+. .-..-++|++++|+.+++.+
T Consensus 32 e~~~~GRll~ydp~t~~~~vl~~---------~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKETTVLLD---------GLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp HT---EEEEEEETTTTEEEEEEE---------EESSEEEEEE-TTSSEEEEE
T ss_pred cCCCCcCEEEEECCCCeEEEehh---------CCCccCeEEEcCCCCEEEEE
Confidence 34567888899998876543331 12245889999999977765
No 495
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=79.46 E-value=14 Score=27.79 Aligned_cols=87 Identities=14% Similarity=0.095 Sum_probs=45.3
Q ss_pred EEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC-C--CeEEEEeCCC--CceEEEecCCccccccCcceeeeEE
Q 023643 183 AYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE-D--GTARIWDCKS--GKCIKVIDPVKDKQLKGVISCVSCI 257 (279)
Q Consensus 183 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d--~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~ 257 (279)
=.+||+.+++....-........+-.+-++|++|.+|+. + ..+++++... ..+...-.... .....+=..+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~----m~~~RWYpT~ 123 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPND----MQSGRWYPTA 123 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccc----ccCCCccccc
Confidence 357888876543321111122222356689999999875 2 3477777543 01111000000 1112233344
Q ss_pred EEcCCCCEEEEEcCcc
Q 023643 258 TLDASESWLVRVRATN 273 (279)
Q Consensus 258 ~~~~~~~~l~~~~~d~ 273 (279)
..-|||+.|+.|+...
T Consensus 124 ~~L~DG~vlIvGG~~~ 139 (243)
T PF07250_consen 124 TTLPDGRVLIVGGSNN 139 (243)
T ss_pred eECCCCCEEEEeCcCC
Confidence 5567999999988753
No 496
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=79.38 E-value=6.2 Score=19.71 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=15.9
Q ss_pred CCcEEEEecCCCeEEEEeCCC
Q 023643 212 STNQIVTGSEDGTARIWDCKS 232 (279)
Q Consensus 212 ~~~~l~~~~~d~~i~vwd~~~ 232 (279)
.+..++.++.||.+..+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 366888888999999999764
No 497
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=78.14 E-value=9.8 Score=33.77 Aligned_cols=69 Identities=10% Similarity=0.068 Sum_probs=47.5
Q ss_pred eecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcc
Q 023643 197 FKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATN 273 (279)
Q Consensus 197 ~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 273 (279)
+.....++...++.. -++.++.+|.|.++...+.........+ ..|...|+++...-++-+++-++.|-
T Consensus 622 ~~~g~lPvrsla~~e---d~~was~gG~V~vi~~tt~~~~~~leah-----qee~~~Vthm~~~~~gVwvafasG~~ 690 (925)
T KOG3522|consen 622 IPTGSLPVRSLAFQE---DFVWASEGGCVHVIPSTTFIRSWDLEAH-----QEEAHSVTHMLYLDNGVWVAFASGDE 690 (925)
T ss_pred cccCCccccchhhhh---ceeeeecCCceEEEechhccccchhHHH-----HhhcceEEEEEeeCCceEEEEcCCCE
Confidence 333456777777753 3566788999999998876655555433 35567899999887777776665553
No 498
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=78.06 E-value=28 Score=26.47 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=39.3
Q ss_pred eEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcC----CCcEEEEecCCCeEEEE
Q 023643 173 AIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARN----STNQIVTGSEDGTARIW 228 (279)
Q Consensus 173 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~----~~~~l~~~~~d~~i~vw 228 (279)
.|+.|+.+|.|.|.|......+.+++-..-++ .+..+. -...|+.++.||.|++.
T Consensus 197 cLViGTE~~~i~iLd~~af~il~~~~lpsvPv-~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 197 CLVIGTESGEIYILDPQAFTILKQVQLPSVPV-FISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred eEEEEecCCeEEEECchhheeEEEEecCCCce-EEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 79999999999999998888877776554444 332221 23457778889988764
No 499
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=77.74 E-value=6.9 Score=19.31 Aligned_cols=29 Identities=7% Similarity=0.132 Sum_probs=18.0
Q ss_pred ccCeEEEEecCCCCceEEEEeeCC--CcEEEe
Q 023643 90 DGPAYDVKFYGGNEDALLLSCGDD--GRICGW 119 (279)
Q Consensus 90 ~~~v~~~~~~~~~~~~~l~s~~~d--g~i~iw 119 (279)
.+.-....|+|+++ .++.++..+ |.-.||
T Consensus 8 ~~~~~~p~~SpDGk-~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGK-YIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSS-EEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCC-EEEEEecCCCCCCcCEE
Confidence 34567789999998 344455555 666555
No 500
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=77.70 E-value=28 Score=26.28 Aligned_cols=75 Identities=11% Similarity=0.207 Sum_probs=43.9
Q ss_pred eEEEcCCCCeEEEecCCCe-EEEEecCC--CcEEE-Eeec------CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC
Q 023643 164 AIAVDPQGGAIFSAAGDSC-AYCWDVES--SRIKM-VFKG------HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG 233 (279)
Q Consensus 164 ~~~~~~~~~~l~~~~~d~~-i~i~d~~~--~~~~~-~~~~------~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~ 233 (279)
+...-|||+.|+.|+.... .-+|.... ..... .+.. ....=-.+...|+|+.++.+..+. .|||..+.
T Consensus 122 T~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n 199 (243)
T PF07250_consen 122 TATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTN 199 (243)
T ss_pred cceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCC
Confidence 4455679998888887643 34444322 11111 1110 011112456679999999988665 55688888
Q ss_pred ceEEEec
Q 023643 234 KCIKVID 240 (279)
Q Consensus 234 ~~~~~~~ 240 (279)
+.+..+.
T Consensus 200 ~v~~~lP 206 (243)
T PF07250_consen 200 TVVRTLP 206 (243)
T ss_pred eEEeeCC
Confidence 7766664
Done!