Query 023643
Match_columns 279
No_of_seqs 406 out of 1099
Neff 12.0
Searched_HMMs 29240
Date Mon Mar 25 10:21:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023643.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023643hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gqb_B Methylosome protein 50; 100.0 3.8E-45 1.3E-49 285.8 26.4 223 1-279 101-328 (344)
2 3ow8_A WD repeat-containing pr 100.0 8E-44 2.7E-48 276.3 28.0 219 1-279 100-318 (321)
3 3ow8_A WD repeat-containing pr 100.0 4.3E-44 1.5E-48 277.8 25.9 221 1-279 56-276 (321)
4 1vyh_C Platelet-activating fac 100.0 3.4E-43 1.2E-47 281.7 28.3 219 1-279 128-366 (410)
5 1vyh_C Platelet-activating fac 100.0 3.9E-43 1.3E-47 281.3 28.0 219 1-279 170-408 (410)
6 4g56_B MGC81050 protein; prote 100.0 2.2E-43 7.5E-48 277.7 25.3 223 1-279 113-340 (357)
7 2ynn_A Coatomer subunit beta'; 100.0 4.6E-43 1.6E-47 270.2 26.3 220 1-279 33-256 (304)
8 2pm7_B Protein transport prote 100.0 2.3E-41 7.8E-46 260.0 28.1 230 1-279 29-282 (297)
9 1got_B GT-beta; complex (GTP-b 100.0 2E-41 6.8E-46 265.1 28.2 220 1-279 117-340 (340)
10 3frx_A Guanine nucleotide-bind 100.0 2.9E-41 1E-45 261.9 28.2 247 1-279 38-314 (319)
11 2ynn_A Coatomer subunit beta'; 100.0 9.7E-41 3.3E-45 257.3 29.4 218 1-276 75-297 (304)
12 1got_B GT-beta; complex (GTP-b 100.0 9.6E-41 3.3E-45 261.3 29.4 224 1-279 75-298 (340)
13 2hes_X YDR267CP; beta-propelle 100.0 2.5E-41 8.4E-46 263.5 25.7 231 1-279 32-277 (330)
14 2pbi_B Guanine nucleotide-bind 100.0 1.4E-40 4.9E-45 261.5 30.0 223 1-279 126-354 (354)
15 3fm0_A Protein CIAO1; WDR39,SG 100.0 3E-41 1E-45 264.6 26.0 227 1-279 36-280 (345)
16 3bg1_A Protein SEC13 homolog; 100.0 9.7E-42 3.3E-46 264.2 21.0 230 1-279 33-290 (316)
17 4gqb_B Methylosome protein 50; 100.0 2.4E-40 8.2E-45 258.7 27.0 223 2-279 50-286 (344)
18 2pbi_B Guanine nucleotide-bind 100.0 3.9E-39 1.3E-43 253.3 29.6 227 1-279 84-312 (354)
19 3iz6_a 40S ribosomal protein R 100.0 7.4E-40 2.5E-44 260.0 25.4 227 1-279 128-372 (380)
20 1nr0_A Actin interacting prote 100.0 1.6E-39 5.6E-44 272.8 28.2 228 1-279 79-352 (611)
21 2ymu_A WD-40 repeat protein; u 100.0 1.7E-39 5.9E-44 271.2 27.8 214 1-279 364-577 (577)
22 1erj_A Transcriptional repress 100.0 3.5E-39 1.2E-43 257.2 27.5 225 1-279 143-386 (393)
23 3fm0_A Protein CIAO1; WDR39,SG 100.0 2E-39 6.7E-44 254.3 25.1 211 16-279 6-222 (345)
24 1erj_A Transcriptional repress 100.0 3.1E-39 1.1E-43 257.4 26.6 225 2-279 84-338 (393)
25 2xzm_R RACK1; ribosome, transl 100.0 3.9E-39 1.3E-43 252.4 26.4 220 1-279 47-282 (343)
26 2j04_B YDR362CP, TAU91; beta p 100.0 9E-40 3.1E-44 267.5 23.0 236 1-279 181-425 (524)
27 1nr0_A Actin interacting prote 100.0 3.2E-39 1.1E-43 271.0 27.0 225 2-279 38-267 (611)
28 4gga_A P55CDC, cell division c 100.0 1.8E-38 6.3E-43 255.2 30.0 243 1-279 123-392 (420)
29 2pm7_B Protein transport prote 100.0 1.3E-38 4.3E-43 244.7 26.8 207 19-279 3-235 (297)
30 4ery_A WD repeat-containing pr 100.0 2.5E-38 8.6E-43 244.8 28.6 207 16-279 14-220 (312)
31 3frx_A Guanine nucleotide-bind 100.0 1.3E-38 4.4E-43 247.0 26.7 211 16-279 8-224 (319)
32 3iz6_a 40S ribosomal protein R 100.0 3.1E-39 1.1E-43 256.4 23.6 246 6-279 49-326 (380)
33 4ggc_A P55CDC, cell division c 100.0 4.5E-38 1.6E-42 243.7 29.3 243 1-279 43-312 (318)
34 4ery_A WD repeat-containing pr 100.0 1.4E-38 4.7E-43 246.2 25.8 220 1-279 85-309 (312)
35 3dwl_C Actin-related protein 2 100.0 1.3E-39 4.5E-44 258.3 20.3 226 1-278 31-278 (377)
36 2hes_X YDR267CP; beta-propelle 100.0 2.7E-38 9.2E-43 246.4 26.7 209 16-279 5-227 (330)
37 4aow_A Guanine nucleotide-bind 100.0 1.1E-37 3.8E-42 243.7 30.2 255 6-279 19-334 (340)
38 4h5i_A Guanine nucleotide-exch 100.0 3.9E-38 1.3E-42 248.5 24.9 221 2-279 103-340 (365)
39 3jrp_A Fusion protein of prote 100.0 1.1E-37 3.9E-42 247.0 26.5 227 1-279 31-284 (379)
40 3vl1_A 26S proteasome regulato 100.0 5.1E-38 1.7E-42 252.6 24.5 241 1-279 117-362 (420)
41 3dm0_A Maltose-binding peripla 100.0 4.9E-38 1.7E-42 267.6 25.7 222 1-279 403-629 (694)
42 2xzm_R RACK1; ribosome, transl 100.0 4.1E-37 1.4E-41 241.0 28.7 212 16-279 12-241 (343)
43 4e54_B DNA damage-binding prot 100.0 1.5E-38 5.3E-43 256.8 21.1 211 18-279 112-324 (435)
44 1k8k_C P40, ARP2/3 complex 41 100.0 9.4E-38 3.2E-42 247.1 24.7 226 1-279 28-271 (372)
45 1gxr_A ESG1, transducin-like e 100.0 5.2E-37 1.8E-41 239.5 27.6 218 1-279 117-334 (337)
46 3f3f_A Nucleoporin SEH1; struc 100.0 3.4E-37 1.2E-41 241.4 26.6 245 1-279 31-334 (351)
47 2ymu_A WD-40 repeat protein; u 100.0 3.8E-37 1.3E-41 257.1 28.4 214 1-279 323-536 (577)
48 4g56_B MGC81050 protein; prote 100.0 1.7E-37 5.8E-42 244.2 24.5 223 2-279 69-298 (357)
49 1sq9_A Antiviral protein SKI8; 100.0 2.5E-37 8.6E-42 246.8 25.8 257 1-279 34-392 (397)
50 2j04_B YDR362CP, TAU91; beta p 100.0 3.8E-38 1.3E-42 257.9 21.0 231 1-279 233-514 (524)
51 3i2n_A WD repeat-containing pr 100.0 1.1E-37 3.8E-42 245.2 22.5 253 2-279 43-350 (357)
52 3zwl_B Eukaryotic translation 100.0 1.5E-36 5E-41 239.7 28.9 239 1-279 52-343 (369)
53 4gq1_A NUP37; propeller, trans 100.0 4.6E-38 1.6E-42 250.6 20.3 247 1-275 109-383 (393)
54 4e54_B DNA damage-binding prot 100.0 2.8E-37 9.6E-42 249.4 24.1 245 1-279 140-427 (435)
55 3k26_A Polycomb protein EED; W 100.0 1.3E-37 4.3E-42 245.7 21.2 241 1-279 93-363 (366)
56 3vl1_A 26S proteasome regulato 100.0 3.7E-37 1.3E-41 247.6 23.6 218 2-279 77-319 (420)
57 3v7d_B Cell division control p 100.0 2.2E-36 7.4E-41 246.2 28.0 238 1-279 140-378 (464)
58 2aq5_A Coronin-1A; WD40 repeat 100.0 1.5E-36 5.2E-41 242.8 26.5 231 2-279 56-296 (402)
59 3bg1_A Protein SEC13 homolog; 100.0 8.1E-38 2.8E-42 242.2 17.6 206 20-279 8-244 (316)
60 2xyi_A Probable histone-bindin 100.0 2.3E-36 8E-41 243.6 26.8 231 1-279 149-407 (430)
61 2pm9_A Protein WEB1, protein t 100.0 7.8E-37 2.7E-41 245.3 23.8 229 2-279 44-291 (416)
62 1r5m_A SIR4-interacting protei 100.0 6.3E-36 2.2E-40 240.4 28.1 241 1-279 66-358 (425)
63 3ei3_B DNA damage-binding prot 100.0 1.4E-36 4.8E-41 241.5 23.5 223 1-279 139-379 (383)
64 1r5m_A SIR4-interacting protei 100.0 4.3E-36 1.5E-40 241.4 26.3 236 1-279 128-422 (425)
65 2pm9_A Protein WEB1, protein t 100.0 5.5E-37 1.9E-41 246.2 21.0 236 1-279 87-334 (416)
66 3dm0_A Maltose-binding peripla 100.0 5.5E-36 1.9E-40 255.1 28.0 230 1-279 450-690 (694)
67 1gxr_A ESG1, transducin-like e 100.0 2E-35 7E-40 230.5 27.8 220 2-279 71-293 (337)
68 3jro_A Fusion protein of prote 100.0 1.8E-36 6.1E-41 259.6 23.4 230 1-279 29-282 (753)
69 3odt_A Protein DOA1; ubiquitin 100.0 3E-35 1E-39 227.3 28.1 236 1-279 37-293 (313)
70 3dwl_C Actin-related protein 2 100.0 3.6E-37 1.2E-41 244.3 17.2 214 20-279 6-233 (377)
71 4aez_A CDC20, WD repeat-contai 100.0 1.2E-35 3.9E-40 237.6 25.7 216 2-279 112-333 (401)
72 1k8k_C P40, ARP2/3 complex 41 100.0 2.4E-35 8.2E-40 233.3 26.6 246 1-279 72-358 (372)
73 3mmy_A MRNA export factor; mRN 100.0 5.9E-36 2E-40 236.2 23.0 240 1-277 62-341 (368)
74 3ei3_B DNA damage-binding prot 100.0 1E-35 3.5E-40 236.5 24.4 206 16-279 64-279 (383)
75 4aez_A CDC20, WD repeat-contai 100.0 2.4E-35 8.3E-40 235.7 26.2 219 1-279 154-377 (401)
76 3k26_A Polycomb protein EED; W 100.0 7.8E-37 2.7E-41 241.1 17.1 223 2-279 43-315 (366)
77 4a11_B DNA excision repair pro 100.0 2.9E-35 9.9E-40 235.4 25.8 263 2-279 22-362 (408)
78 3dw8_B Serine/threonine-protei 100.0 3.2E-36 1.1E-40 244.0 20.2 246 1-279 48-370 (447)
79 3gre_A Serine/threonine-protei 100.0 1.3E-35 4.4E-40 239.9 23.6 234 7-279 47-289 (437)
80 3jrp_A Fusion protein of prote 100.0 2.6E-35 8.8E-40 233.5 24.2 209 17-279 3-237 (379)
81 3lrv_A PRE-mRNA-splicing facto 100.0 7.6E-36 2.6E-40 233.8 20.0 226 1-279 56-289 (343)
82 3mkq_A Coatomer beta'-subunit; 100.0 2E-35 6.9E-40 255.8 24.1 220 1-279 33-256 (814)
83 1p22_A F-BOX/WD-repeat protein 100.0 1.9E-34 6.5E-39 232.9 27.2 212 1-279 151-362 (435)
84 2w18_A PALB2, fancn, partner a 100.0 6.3E-35 2.1E-39 221.3 21.8 243 3-279 63-354 (356)
85 3sfz_A APAF-1, apoptotic pepti 100.0 2.2E-34 7.5E-39 259.4 28.4 221 1-279 635-910 (1249)
86 3zwl_B Eukaryotic translation 100.0 2.7E-34 9.3E-39 226.7 25.3 203 18-279 25-246 (369)
87 1yfq_A Cell cycle arrest prote 100.0 2.1E-34 7.3E-39 225.3 23.8 233 1-279 31-279 (342)
88 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.8E-34 1.3E-38 232.1 25.5 208 24-279 101-336 (450)
89 3gre_A Serine/threonine-protei 100.0 5.6E-35 1.9E-39 236.2 20.6 236 1-279 84-356 (437)
90 1sq9_A Antiviral protein SKI8; 100.0 6.3E-34 2.2E-38 227.1 26.1 242 16-279 7-319 (397)
91 1pgu_A Actin interacting prote 100.0 7.3E-34 2.5E-38 238.7 25.8 242 1-279 181-611 (615)
92 3dw8_B Serine/threonine-protei 100.0 4.1E-34 1.4E-38 231.6 22.5 243 23-279 26-312 (447)
93 3odt_A Protein DOA1; ubiquitin 100.0 2.5E-33 8.6E-38 216.5 25.7 225 16-279 9-252 (313)
94 3f3f_A Nucleoporin SEH1; struc 100.0 1E-33 3.5E-38 221.6 23.4 216 19-279 5-246 (351)
95 1p22_A F-BOX/WD-repeat protein 100.0 1.2E-33 4.1E-38 228.2 23.2 212 1-279 191-411 (435)
96 3v7d_B Cell division control p 100.0 4.6E-33 1.6E-37 226.6 25.4 234 1-279 181-418 (464)
97 2oaj_A Protein SNI1; WD40 repe 100.0 1.3E-33 4.6E-38 245.3 22.9 205 21-279 13-239 (902)
98 2xyi_A Probable histone-bindin 100.0 2.7E-33 9.3E-38 225.7 22.7 222 19-279 122-350 (430)
99 2aq5_A Coronin-1A; WD40 repeat 100.0 1.2E-33 4.1E-38 226.0 20.0 222 1-279 102-339 (402)
100 1pgu_A Actin interacting prote 100.0 8.2E-33 2.8E-37 232.4 26.0 231 2-279 38-280 (615)
101 3mmy_A MRNA export factor; mRN 100.0 3.1E-33 1.1E-37 220.6 22.1 215 16-279 30-301 (368)
102 3jro_A Fusion protein of prote 100.0 1.2E-33 4.2E-38 242.1 21.0 207 19-279 3-235 (753)
103 3mkq_A Coatomer beta'-subunit; 100.0 4.4E-33 1.5E-37 241.2 24.3 207 16-279 4-214 (814)
104 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.6E-32 5.6E-37 222.3 26.0 209 1-279 137-345 (445)
105 4h5i_A Guanine nucleotide-exch 100.0 6.9E-33 2.4E-37 218.6 20.4 184 1-233 155-344 (365)
106 2j04_A TAU60, YPL007P, hypothe 100.0 1.8E-32 6.3E-37 220.5 22.9 216 2-278 63-293 (588)
107 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.2E-31 4.1E-36 217.2 27.2 212 1-279 177-388 (445)
108 3sfz_A APAF-1, apoptotic pepti 100.0 5.8E-32 2E-36 243.7 27.1 211 19-279 609-868 (1249)
109 3vu4_A KMHSV2; beta-propeller 100.0 2.1E-32 7.3E-37 215.1 21.2 228 7-279 3-268 (355)
110 1yfq_A Cell cycle arrest prote 100.0 1.3E-31 4.5E-36 209.5 23.8 218 1-274 77-315 (342)
111 3i2n_A WD repeat-containing pr 100.0 7.6E-32 2.6E-36 212.0 22.0 204 18-279 11-240 (357)
112 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1E-30 3.5E-35 211.9 26.9 220 2-278 124-387 (450)
113 2oaj_A Protein SNI1; WD40 repe 100.0 5.7E-31 1.9E-35 228.9 25.9 234 1-279 37-309 (902)
114 2j04_A TAU60, YPL007P, hypothe 100.0 4.2E-31 1.4E-35 212.7 21.6 214 23-279 13-251 (588)
115 3vu4_A KMHSV2; beta-propeller 100.0 9.8E-30 3.4E-34 199.9 27.0 232 2-279 80-333 (355)
116 3lrv_A PRE-mRNA-splicing facto 100.0 1.6E-31 5.4E-36 209.3 15.9 190 40-279 47-241 (343)
117 1l0q_A Surface layer protein; 100.0 1.6E-29 5.5E-34 201.3 27.6 214 1-279 10-230 (391)
118 4gq1_A NUP37; propeller, trans 100.0 5.9E-31 2E-35 209.6 14.7 198 40-279 100-345 (393)
119 4a11_B DNA excision repair pro 100.0 2.1E-29 7.2E-34 201.4 23.1 236 1-279 164-402 (408)
120 4aow_A Guanine nucleotide-bind 100.0 1.5E-29 5.1E-34 197.6 21.7 183 1-234 148-339 (340)
121 1l0q_A Surface layer protein; 100.0 1.8E-28 6.1E-33 195.3 27.8 213 2-279 53-272 (391)
122 3bws_A Protein LP49; two-domai 100.0 4.6E-29 1.6E-33 201.3 23.8 217 2-279 143-387 (433)
123 4gga_A P55CDC, cell division c 100.0 5.2E-29 1.8E-33 200.3 23.2 191 2-239 208-402 (420)
124 3bws_A Protein LP49; two-domai 100.0 3.8E-28 1.3E-32 195.9 27.2 214 2-279 190-429 (433)
125 2w18_A PALB2, fancn, partner a 100.0 2.2E-29 7.4E-34 191.1 16.6 184 2-230 156-355 (356)
126 2hqs_A Protein TOLB; TOLB, PAL 100.0 4.8E-27 1.6E-31 188.2 24.8 211 3-279 159-384 (415)
127 4ggc_A P55CDC, cell division c 100.0 3.5E-27 1.2E-31 182.5 22.1 172 18-234 143-317 (318)
128 2hqs_A Protein TOLB; TOLB, PAL 100.0 6.6E-27 2.3E-31 187.4 18.5 218 4-279 94-341 (415)
129 2ojh_A Uncharacterized protein 99.9 3E-25 1E-29 169.6 22.3 217 1-279 20-255 (297)
130 2oit_A Nucleoporin 214KDA; NH2 99.9 5.1E-26 1.7E-30 182.9 18.5 218 25-269 36-258 (434)
131 1ri6_A Putative isomerase YBHE 99.9 8.3E-24 2.8E-28 165.2 23.5 228 2-279 14-259 (343)
132 1nir_A Nitrite reductase; hemo 99.9 6.3E-24 2.2E-28 175.2 23.3 240 2-279 158-455 (543)
133 3u4y_A Uncharacterized protein 99.9 2.9E-23 9.8E-28 161.5 22.7 215 2-279 19-249 (331)
134 1pby_B Quinohemoprotein amine 99.9 2.8E-23 9.5E-28 161.8 21.9 213 1-279 9-307 (337)
135 1ri6_A Putative isomerase YBHE 99.9 2.8E-23 9.7E-28 162.1 21.6 224 2-279 59-305 (343)
136 3hfq_A Uncharacterized protein 99.9 8.7E-23 3E-27 159.9 24.4 234 2-278 62-313 (347)
137 1jmx_B Amine dehydrogenase; ox 99.9 1.3E-22 4.3E-27 158.9 23.0 215 1-279 19-322 (349)
138 2ojh_A Uncharacterized protein 99.9 1.6E-23 5.6E-28 160.0 17.4 215 2-273 61-293 (297)
139 2oit_A Nucleoporin 214KDA; NH2 99.9 8.5E-23 2.9E-27 164.2 21.9 170 24-233 91-279 (434)
140 2ecf_A Dipeptidyl peptidase IV 99.9 2.9E-23 9.9E-28 178.2 18.6 236 4-278 65-363 (741)
141 1xfd_A DIP, dipeptidyl aminope 99.9 4.2E-23 1.4E-27 176.7 19.5 238 1-279 35-341 (723)
142 3vgz_A Uncharacterized protein 99.9 6.4E-22 2.2E-26 155.2 24.3 215 2-279 68-300 (353)
143 3u4y_A Uncharacterized protein 99.9 6.7E-22 2.3E-26 153.8 23.0 229 2-279 61-301 (331)
144 1nir_A Nitrite reductase; hemo 99.9 3.1E-22 1E-26 165.2 20.1 231 2-279 247-511 (543)
145 3vgz_A Uncharacterized protein 99.9 3.5E-21 1.2E-25 150.9 24.2 212 2-272 110-334 (353)
146 3hfq_A Uncharacterized protein 99.9 4.1E-21 1.4E-25 150.4 22.7 239 2-279 15-268 (347)
147 1k32_A Tricorn protease; prote 99.9 5.2E-22 1.8E-26 176.1 19.2 212 2-279 264-499 (1045)
148 3scy_A Hypothetical bacterial 99.9 7E-20 2.4E-24 144.2 27.0 237 2-279 26-288 (361)
149 1xfd_A DIP, dipeptidyl aminope 99.9 3.8E-22 1.3E-26 170.9 15.1 201 27-279 18-286 (723)
150 2ecf_A Dipeptidyl peptidase IV 99.9 1.5E-21 5E-26 167.7 18.8 216 25-279 36-318 (741)
151 2z3z_A Dipeptidyl aminopeptida 99.9 1E-20 3.5E-25 161.6 21.8 223 2-279 140-432 (706)
152 3scy_A Hypothetical bacterial 99.9 1.2E-19 4.2E-24 142.8 26.3 240 2-278 74-333 (361)
153 3o4h_A Acylamino-acid-releasin 99.9 1.3E-21 4.6E-26 163.5 15.8 211 2-279 43-273 (582)
154 2z3z_A Dipeptidyl aminopeptida 99.9 2.8E-21 9.5E-26 165.1 18.0 225 2-272 100-376 (706)
155 1k32_A Tricorn protease; prote 99.9 4E-21 1.4E-25 170.5 16.4 224 2-279 223-458 (1045)
156 3o4h_A Acylamino-acid-releasin 99.9 9.1E-21 3.1E-25 158.5 17.4 194 24-279 20-224 (582)
157 1z68_A Fibroblast activation p 99.9 2.1E-21 7E-26 166.2 11.8 234 2-278 35-342 (719)
158 1pby_B Quinohemoprotein amine 99.8 3.7E-19 1.3E-23 138.4 19.9 157 42-241 2-172 (337)
159 1z68_A Fibroblast activation p 99.8 2.6E-20 8.9E-25 159.4 13.7 195 30-279 20-284 (719)
160 3fvz_A Peptidyl-glycine alpha- 99.8 6.3E-18 2.2E-22 131.3 25.7 231 2-279 68-319 (329)
161 1jof_A Carboxy-CIS,CIS-muconat 99.8 4.1E-19 1.4E-23 140.0 18.9 228 4-279 61-338 (365)
162 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.4E-18 8.3E-23 135.6 19.5 229 3-279 14-288 (365)
163 1q7f_A NHL, brain tumor CG1071 99.8 2.3E-17 7.8E-22 125.6 24.1 216 2-279 50-277 (286)
164 1jmx_B Amine dehydrogenase; ox 99.8 1.9E-18 6.5E-23 135.1 17.2 164 31-241 5-184 (349)
165 4a5s_A Dipeptidyl peptidase 4 99.8 8.1E-19 2.8E-23 150.5 15.3 236 2-278 35-349 (740)
166 2oiz_A Aromatic amine dehydrog 99.8 1.9E-17 6.5E-22 130.1 19.5 223 2-264 30-360 (361)
167 3azo_A Aminopeptidase; POP fam 99.8 9.6E-18 3.3E-22 142.3 18.9 226 2-278 46-319 (662)
168 4a5s_A Dipeptidyl peptidase 4 99.8 3.6E-18 1.2E-22 146.5 14.6 197 27-279 18-291 (740)
169 3e5z_A Putative gluconolactona 99.8 4.1E-16 1.4E-20 119.3 23.0 211 2-277 49-282 (296)
170 1rwi_B Serine/threonine-protei 99.8 9.5E-16 3.2E-20 115.6 24.5 216 2-279 45-261 (270)
171 1q7f_A NHL, brain tumor CG1071 99.8 1.2E-15 3.9E-20 116.2 24.7 204 23-279 27-235 (286)
172 2dg1_A DRP35, lactonase; beta 99.8 1.7E-15 6E-20 117.7 26.0 211 19-279 38-260 (333)
173 3e5z_A Putative gluconolactona 99.8 8.9E-16 3E-20 117.4 23.6 201 19-279 21-243 (296)
174 3fvz_A Peptidyl-glycine alpha- 99.8 6.9E-16 2.4E-20 119.8 23.2 190 25-261 23-250 (329)
175 3azo_A Aminopeptidase; POP fam 99.8 1.3E-16 4.4E-21 135.4 20.0 203 24-278 128-363 (662)
176 3pe7_A Oligogalacturonate lyas 99.8 2E-16 6.7E-21 125.6 19.9 203 18-279 23-270 (388)
177 2gop_A Trilobed protease; beta 99.7 2.6E-16 9E-21 123.0 18.3 199 2-278 42-288 (347)
178 2dg1_A DRP35, lactonase; beta 99.7 2.5E-14 8.4E-19 111.2 26.1 214 2-272 65-300 (333)
179 3pe7_A Oligogalacturonate lyas 99.7 1.9E-16 6.6E-21 125.6 13.8 215 5-279 62-326 (388)
180 3dsm_A Uncharacterized protein 99.7 5.4E-15 1.9E-19 114.7 21.3 215 2-279 63-299 (328)
181 3no2_A Uncharacterized protein 99.7 2.4E-14 8.4E-19 108.0 24.0 215 2-270 14-231 (276)
182 1xip_A Nucleoporin NUP159; bet 99.7 2.2E-15 7.5E-20 117.8 16.7 190 26-268 38-230 (388)
183 3c5m_A Oligogalacturonate lyas 99.7 2.3E-16 7.8E-21 125.5 11.2 218 4-270 61-301 (396)
184 2xdw_A Prolyl endopeptidase; a 99.7 1.2E-14 4.1E-19 124.3 21.3 199 24-278 123-362 (710)
185 3no2_A Uncharacterized protein 99.7 2.2E-14 7.6E-19 108.2 19.9 181 40-279 4-192 (276)
186 3dsm_A Uncharacterized protein 99.7 2.1E-14 7.2E-19 111.3 20.2 217 2-279 16-250 (328)
187 2z2n_A Virginiamycin B lyase; 99.7 5.1E-13 1.7E-17 102.0 27.4 217 2-279 35-252 (299)
188 2oiz_A Aromatic amine dehydrog 99.7 9.2E-15 3.2E-19 114.8 18.0 62 207-279 259-331 (361)
189 1rwi_B Serine/threonine-protei 99.7 5.3E-14 1.8E-18 106.0 20.9 194 27-279 25-219 (270)
190 3c5m_A Oligogalacturonate lyas 99.6 1.1E-15 3.8E-20 121.5 12.0 212 28-279 38-270 (396)
191 2xdw_A Prolyl endopeptidase; a 99.6 5.7E-14 1.9E-18 120.1 23.1 221 4-279 152-411 (710)
192 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 2.6E-13 8.8E-18 104.5 24.2 220 2-279 45-296 (314)
193 2bkl_A Prolyl endopeptidase; m 99.6 7.3E-14 2.5E-18 119.1 22.7 198 23-278 118-345 (695)
194 2gop_A Trilobed protease; beta 99.6 5.9E-14 2E-18 109.6 18.7 197 5-278 87-327 (347)
195 2bkl_A Prolyl endopeptidase; m 99.6 6.3E-14 2.2E-18 119.5 17.4 218 3-279 147-394 (695)
196 3g4e_A Regucalcin; six bladed 99.6 2.3E-12 7.9E-17 98.5 24.4 207 2-270 34-260 (297)
197 2z2n_A Virginiamycin B lyase; 99.6 9.7E-12 3.3E-16 94.8 27.5 197 24-279 13-210 (299)
198 2qc5_A Streptogramin B lactona 99.6 1.8E-11 6E-16 93.4 27.8 217 2-279 40-257 (300)
199 3hrp_A Uncharacterized protein 99.5 3.9E-12 1.3E-16 101.5 23.1 230 2-278 151-406 (409)
200 1qks_A Cytochrome CD1 nitrite 99.5 2E-11 6.8E-16 100.9 27.7 229 2-279 176-418 (567)
201 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.3E-11 4.4E-16 94.9 23.9 204 25-279 17-253 (314)
202 1yr2_A Prolyl oligopeptidase; 99.5 9.6E-13 3.3E-17 113.0 19.2 197 24-278 161-389 (741)
203 2mad_H Methylamine dehydrogena 99.5 1.4E-11 4.9E-16 96.9 24.2 244 4-279 48-347 (373)
204 1xip_A Nucleoporin NUP159; bet 99.5 4.4E-13 1.5E-17 104.9 15.2 150 92-279 39-188 (388)
205 2ghs_A AGR_C_1268P; regucalcin 99.5 2.2E-11 7.7E-16 94.2 24.2 204 3-270 71-290 (326)
206 1qks_A Cytochrome CD1 nitrite 99.5 6.9E-12 2.4E-16 103.7 22.4 187 40-279 166-370 (567)
207 3hrp_A Uncharacterized protein 99.5 9.4E-12 3.2E-16 99.2 22.0 204 26-279 131-351 (409)
208 2qc5_A Streptogramin B lactona 99.5 1.3E-10 4.3E-15 88.6 27.2 197 24-279 18-215 (300)
209 1yr2_A Prolyl oligopeptidase; 99.5 3.8E-12 1.3E-16 109.3 19.8 219 4-279 190-438 (741)
210 3dr2_A Exported gluconolactona 99.5 3.4E-11 1.2E-15 92.3 22.3 210 2-277 66-302 (305)
211 3sjl_D Methylamine dehydrogena 99.4 2.3E-11 7.9E-16 94.9 19.7 239 2-279 58-360 (386)
212 3g4e_A Regucalcin; six bladed 99.4 1.1E-10 3.7E-15 89.2 22.9 198 26-279 13-226 (297)
213 3c75_H MADH, methylamine dehyd 99.4 1.5E-11 5.2E-16 97.5 17.9 237 3-279 99-399 (426)
214 3dr2_A Exported gluconolactona 99.4 4E-11 1.4E-15 92.0 19.8 203 19-279 38-264 (305)
215 2hz6_A Endoplasmic reticulum t 99.4 1.1E-13 3.7E-18 109.0 1.5 179 40-279 8-189 (369)
216 2ghs_A AGR_C_1268P; regucalcin 99.4 8.6E-10 3E-14 85.3 23.1 195 28-279 51-257 (326)
217 2qe8_A Uncharacterized protein 99.3 4.9E-11 1.7E-15 93.0 15.7 221 24-274 65-313 (343)
218 3iuj_A Prolyl endopeptidase; h 99.3 1.5E-10 5E-15 98.8 18.3 198 24-279 127-356 (693)
219 2qe8_A Uncharacterized protein 99.3 2.3E-10 7.9E-15 89.2 17.5 214 26-279 17-275 (343)
220 2hz6_A Endoplasmic reticulum t 99.3 8.3E-13 2.9E-17 103.9 3.4 179 1-240 17-200 (369)
221 1mda_H Methylamine dehydrogena 99.3 1.5E-10 5.3E-15 90.3 15.3 230 4-279 47-343 (368)
222 2mad_H Methylamine dehydrogena 99.3 7.6E-09 2.6E-13 81.4 23.8 76 163-239 270-357 (373)
223 2iwa_A Glutamine cyclotransfer 99.3 1.1E-08 3.9E-13 75.7 23.0 207 16-277 10-232 (266)
224 3nok_A Glutaminyl cyclase; bet 99.2 2.1E-08 7.2E-13 73.5 21.4 196 17-269 45-253 (268)
225 3iuj_A Prolyl endopeptidase; h 99.2 3.6E-09 1.2E-13 90.2 19.8 216 4-279 156-402 (693)
226 3nol_A Glutamine cyclotransfer 99.1 2.9E-08 9.8E-13 72.8 20.3 198 16-270 32-243 (262)
227 2ece_A 462AA long hypothetical 99.1 4E-08 1.4E-12 77.6 21.9 220 2-270 105-399 (462)
228 3sjl_D Methylamine dehydrogena 99.1 9.6E-09 3.3E-13 80.3 18.3 191 40-279 43-253 (386)
229 1npe_A Nidogen, entactin; glyc 99.1 3.7E-07 1.3E-11 68.4 26.1 216 4-278 11-234 (267)
230 3mbr_X Glutamine cyclotransfer 99.1 1E-07 3.4E-12 69.3 21.5 198 16-270 10-222 (243)
231 1kb0_A Quinohemoprotein alcoho 99.1 1.2E-08 4.1E-13 86.5 19.0 79 181-267 457-535 (677)
232 1yiq_A Quinohemoprotein alcoho 99.1 2E-08 6.8E-13 85.4 19.8 80 180-267 454-533 (689)
233 1fwx_A Nitrous oxide reductase 99.1 9.8E-09 3.4E-13 83.8 16.9 106 162-271 279-407 (595)
234 2ece_A 462AA long hypothetical 99.0 6.4E-08 2.2E-12 76.5 18.1 200 40-279 94-349 (462)
235 1npe_A Nidogen, entactin; glyc 99.0 2.1E-06 7.1E-11 64.2 25.1 201 3-264 58-263 (267)
236 1kb0_A Quinohemoprotein alcoho 99.0 1.9E-08 6.6E-13 85.3 15.1 104 167-279 320-504 (677)
237 3c75_H MADH, methylamine dehyd 99.0 5.3E-08 1.8E-12 77.4 16.4 190 40-278 83-291 (426)
238 3hxj_A Pyrrolo-quinoline quino 98.9 6.7E-08 2.3E-12 74.6 16.4 202 2-278 39-240 (330)
239 3hxj_A Pyrrolo-quinoline quino 98.9 1.3E-07 4.5E-12 73.0 17.6 204 2-277 116-319 (330)
240 3qqz_A Putative uncharacterize 98.9 4E-06 1.4E-10 61.8 24.0 214 20-278 21-249 (255)
241 2fp8_A Strictosidine synthase; 98.9 8.4E-07 2.9E-11 68.4 21.4 110 162-278 187-309 (322)
242 1mda_H Methylamine dehydrogena 98.9 5.7E-08 2E-12 75.9 14.6 76 164-240 268-354 (368)
243 2fp8_A Strictosidine synthase; 98.9 9.1E-07 3.1E-11 68.2 20.2 207 26-271 19-248 (322)
244 1yiq_A Quinohemoprotein alcoho 98.8 9.7E-08 3.3E-12 81.2 15.0 98 173-279 321-502 (689)
245 3q7m_A Lipoprotein YFGL, BAMB; 98.8 8.9E-07 3.1E-11 69.7 19.4 99 170-279 276-375 (376)
246 3v64_C Agrin; beta propeller, 98.8 3E-05 1E-09 60.4 25.7 195 26-277 73-270 (349)
247 3v65_B Low-density lipoprotein 98.8 1.9E-05 6.4E-10 62.5 24.7 214 4-277 97-313 (386)
248 3q7m_A Lipoprotein YFGL, BAMB; 98.7 3.1E-06 1.1E-10 66.6 19.3 183 40-279 102-293 (376)
249 2xe4_A Oligopeptidase B; hydro 98.7 3.2E-06 1.1E-10 72.8 20.0 195 27-278 175-394 (751)
250 1fwx_A Nitrous oxide reductase 98.7 2.2E-06 7.6E-11 70.2 17.0 88 182-279 255-358 (595)
251 3nol_A Glutamine cyclotransfer 98.6 3E-06 1E-10 62.2 15.4 150 93-279 45-198 (262)
252 2iwa_A Glutamine cyclotransfer 98.6 3.5E-06 1.2E-10 62.5 15.8 180 3-233 44-238 (266)
253 1kv9_A Type II quinohemoprotei 98.6 7.4E-06 2.5E-10 69.5 18.5 61 180-241 437-497 (668)
254 3nok_A Glutaminyl cyclase; bet 98.6 1.2E-05 4.2E-10 59.0 17.0 150 91-278 55-206 (268)
255 3sov_A LRP-6, low-density lipo 98.5 0.00013 4.4E-09 56.0 24.0 217 4-277 14-233 (318)
256 1k3i_A Galactose oxidase precu 98.5 1E-05 3.5E-10 68.7 18.1 219 4-272 220-476 (656)
257 2p4o_A Hypothetical protein; p 98.5 7.1E-05 2.4E-09 57.1 21.0 192 26-279 32-239 (306)
258 2p4o_A Hypothetical protein; p 98.5 0.00011 3.8E-09 56.0 22.0 216 3-271 53-277 (306)
259 3amr_A 3-phytase; beta-propell 98.5 8.6E-05 3E-09 56.9 20.5 194 40-279 39-260 (355)
260 3v64_C Agrin; beta propeller, 98.5 0.00016 5.6E-09 56.2 22.8 154 91-278 73-230 (349)
261 1ijq_A LDL receptor, low-densi 98.5 0.00021 7E-09 54.8 26.6 220 3-278 10-234 (316)
262 4a2l_A BT_4663, two-component 98.5 0.00051 1.8E-08 59.7 27.4 203 25-273 262-472 (795)
263 3mbr_X Glutamine cyclotransfer 98.4 5.1E-05 1.8E-09 55.2 17.4 150 91-277 21-174 (243)
264 2ad6_A Methanol dehydrogenase 98.4 4.1E-05 1.4E-09 63.7 19.2 62 179-241 442-503 (571)
265 1kv9_A Type II quinohemoprotei 98.4 5.2E-06 1.8E-10 70.5 14.0 98 173-279 316-485 (668)
266 4a2l_A BT_4663, two-component 98.4 0.00063 2.1E-08 59.1 26.7 206 25-273 309-518 (795)
267 4hw6_A Hypothetical protein, I 98.4 0.00033 1.1E-08 56.2 22.8 160 92-278 229-429 (433)
268 4hw6_A Hypothetical protein, I 98.4 0.0002 7E-09 57.4 21.4 118 162-279 230-371 (433)
269 3p5b_L Low density lipoprotein 98.3 0.00056 1.9E-08 54.3 25.8 168 24-235 110-280 (400)
270 3tc9_A Hypothetical hydrolase; 98.3 0.00032 1.1E-08 56.3 21.8 154 27-231 138-300 (430)
271 3tc9_A Hypothetical hydrolase; 98.3 2.9E-05 9.8E-10 62.3 15.0 150 92-278 138-297 (430)
272 2xe4_A Oligopeptidase B; hydro 98.3 4.4E-05 1.5E-09 65.8 16.6 113 92-233 175-305 (751)
273 3v65_B Low-density lipoprotein 98.3 0.00075 2.6E-08 53.3 22.8 155 91-279 116-274 (386)
274 3p5b_L Low density lipoprotein 98.3 0.00079 2.7E-08 53.4 24.1 160 89-278 110-273 (400)
275 1w6s_A Methanol dehydrogenase 98.3 0.00016 5.6E-09 60.3 19.3 62 179-241 451-512 (599)
276 2ad6_A Methanol dehydrogenase 98.3 4.3E-05 1.5E-09 63.6 15.8 102 169-279 311-491 (571)
277 3m0c_C LDL receptor, low-densi 98.3 0.0015 5.2E-08 56.3 26.3 169 25-237 423-594 (791)
278 3v9f_A Two-component system se 98.3 0.0011 3.8E-08 57.4 25.0 199 25-279 362-565 (781)
279 3amr_A 3-phytase; beta-propell 98.2 0.0004 1.4E-08 53.3 19.1 199 3-240 50-272 (355)
280 1ijq_A LDL receptor, low-densi 98.2 0.0008 2.7E-08 51.6 24.9 159 90-278 29-191 (316)
281 2p9w_A MAL S 1 allergenic prot 98.2 0.0008 2.7E-08 51.2 20.4 169 28-232 15-215 (334)
282 3sov_A LRP-6, low-density lipo 98.2 0.00084 2.9E-08 51.5 20.8 155 91-278 35-193 (318)
283 1flg_A Protein (quinoprotein e 98.2 0.00023 7.9E-09 59.4 18.6 61 180-241 465-525 (582)
284 1n7d_A LDL receptor, low-densi 98.2 2.5E-05 8.6E-10 66.6 12.9 163 26-233 406-572 (699)
285 2p9w_A MAL S 1 allergenic prot 98.2 0.00025 8.6E-09 53.9 16.9 165 90-279 12-212 (334)
286 3v9f_A Two-component system se 98.2 0.0027 9.3E-08 55.1 25.3 204 25-274 312-517 (781)
287 1k3i_A Galactose oxidase precu 98.2 0.00012 4.2E-09 62.1 16.3 103 163-271 402-530 (656)
288 3qqz_A Putative uncharacterize 98.1 0.00064 2.2E-08 50.1 17.9 167 86-279 22-201 (255)
289 4a0p_A LRP6, LRP-6, low-densit 98.1 0.0031 1E-07 53.1 24.0 214 4-277 16-232 (628)
290 3s94_A LRP-6, low-density lipo 98.1 0.0033 1.1E-07 52.9 22.7 183 3-233 18-203 (619)
291 3sre_A PON1, serum paraoxonase 98.0 0.0029 9.8E-08 49.1 19.5 98 162-271 167-286 (355)
292 3m0c_C LDL receptor, low-densi 98.0 0.0066 2.3E-07 52.5 24.0 157 90-277 423-584 (791)
293 3kya_A Putative phosphatase; s 97.9 0.0051 1.7E-07 49.9 22.5 69 162-230 249-339 (496)
294 1w6s_A Methanol dehydrogenase 97.9 0.003 1E-07 52.8 20.1 76 164-240 245-350 (599)
295 2xbg_A YCF48-like protein; pho 97.9 0.0042 1.4E-07 47.8 22.8 108 162-278 207-318 (327)
296 1n7d_A LDL receptor, low-densi 97.8 0.0004 1.4E-08 59.3 13.2 164 28-240 455-622 (699)
297 1flg_A Protein (quinoprotein e 97.8 0.0069 2.4E-07 50.6 20.1 102 169-279 331-513 (582)
298 3pbp_A Nucleoporin NUP82; beta 97.8 0.0075 2.6E-07 47.5 18.6 114 162-277 68-207 (452)
299 2vpj_A Kelch-like protein 12; 97.6 0.01 3.5E-07 44.9 16.6 93 170-272 159-263 (301)
300 3kya_A Putative phosphatase; s 97.5 0.024 8.3E-07 46.0 23.5 170 93-278 249-471 (496)
301 2xzh_A Clathrin heavy chain 1; 97.5 0.017 5.8E-07 43.9 19.9 193 3-234 126-334 (365)
302 3ii7_A Kelch-like protein 7; p 97.5 0.02 6.8E-07 43.4 18.1 93 170-272 149-257 (306)
303 3sre_A PON1, serum paraoxonase 97.4 0.027 9.2E-07 43.7 18.5 106 163-279 115-249 (355)
304 2xn4_A Kelch-like protein 2; s 97.4 0.025 8.5E-07 42.8 17.3 66 170-237 155-234 (302)
305 3s94_A LRP-6, low-density lipo 97.3 0.059 2E-06 45.4 24.6 160 26-233 349-511 (619)
306 4asc_A Kelch repeat and BTB do 97.2 0.044 1.5E-06 41.7 17.1 93 170-272 148-253 (315)
307 1zgk_A Kelch-like ECH-associat 97.2 0.045 1.6E-06 41.5 16.3 66 170-237 168-245 (308)
308 1tl2_A L10, protein (tachylect 97.2 0.0014 4.7E-08 46.7 6.9 106 162-275 43-156 (236)
309 1bpo_A Protein (clathrin); cla 97.2 0.062 2.1E-06 42.6 21.8 194 2-234 124-333 (494)
310 3pbp_A Nucleoporin NUP82; beta 97.1 0.032 1.1E-06 44.0 14.9 138 26-186 66-208 (452)
311 2ism_A Putative oxidoreductase 97.0 0.085 2.9E-06 41.0 18.7 59 203-270 269-333 (352)
312 4a0p_A LRP6, LRP-6, low-densit 96.9 0.15 5E-06 43.1 25.6 165 26-239 340-514 (628)
313 3ei3_A DNA damage-binding prot 96.9 0.17 5.8E-06 45.9 19.1 105 162-278 888-995 (1158)
314 2xn4_A Kelch-like protein 2; s 96.8 0.11 3.8E-06 39.2 15.2 65 170-236 204-280 (302)
315 2xbg_A YCF48-like protein; pho 96.7 0.13 4.3E-06 39.5 24.6 106 162-275 165-272 (327)
316 3ei3_A DNA damage-binding prot 96.7 0.33 1.1E-05 44.1 25.3 80 25-122 553-635 (1158)
317 1tl2_A L10, protein (tachylect 96.7 0.1 3.4E-06 37.4 16.0 154 26-225 41-203 (236)
318 1cru_A Protein (soluble quinop 96.7 0.19 6.6E-06 40.5 17.1 32 25-60 26-57 (454)
319 2xzh_A Clathrin heavy chain 1; 96.6 0.14 5E-06 39.0 24.3 189 3-240 87-298 (365)
320 3das_A Putative oxidoreductase 96.6 0.16 5.6E-06 39.2 17.5 61 24-101 30-90 (347)
321 2ism_A Putative oxidoreductase 96.6 0.063 2.2E-06 41.7 12.9 100 162-269 33-152 (352)
322 2vpj_A Kelch-like protein 12; 96.6 0.15 5E-06 38.4 15.9 65 170-236 206-282 (301)
323 2g8s_A Glucose/sorbosone dehyd 96.6 0.18 6.3E-06 39.1 15.3 29 26-59 18-47 (353)
324 2woz_A Kelch repeat and BTB do 96.6 0.16 5.6E-06 38.6 15.9 66 170-237 158-236 (318)
325 3das_A Putative oxidoreductase 96.5 0.12 4.1E-06 39.9 13.7 102 162-270 34-158 (347)
326 3a9g_A Putative uncharacterize 96.4 0.23 8E-06 38.5 21.7 62 202-270 259-330 (354)
327 1cru_A Protein (soluble quinop 96.4 0.089 3E-06 42.4 12.8 103 162-271 29-163 (454)
328 1xi4_A Clathrin heavy chain; a 96.4 0.51 1.7E-05 43.6 18.1 188 3-239 86-296 (1630)
329 2be1_A Serine/threonine-protei 96.3 0.0069 2.4E-07 46.6 5.6 64 170-234 110-185 (339)
330 1bpo_A Protein (clathrin); cla 96.2 0.35 1.2E-05 38.5 25.5 189 3-240 86-297 (494)
331 1xi4_A Clathrin heavy chain; a 96.2 0.18 6.3E-06 46.3 14.4 194 2-233 124-332 (1630)
332 1zgk_A Kelch-like ECH-associat 96.1 0.31 1.1E-05 36.8 16.8 65 170-236 215-291 (308)
333 3a9g_A Putative uncharacterize 95.9 0.42 1.4E-05 37.1 21.6 29 25-58 28-56 (354)
334 2zwa_A Leucine carboxyl methyl 95.9 0.72 2.5E-05 39.5 19.4 72 164-236 543-639 (695)
335 3ii7_A Kelch-like protein 7; p 95.7 0.47 1.6E-05 35.7 15.5 65 170-236 200-276 (306)
336 2g8s_A Glucose/sorbosone dehyd 95.7 0.14 4.7E-06 39.8 10.5 106 162-270 20-148 (353)
337 2uvk_A YJHT; unknown function, 95.5 0.49 1.7E-05 36.6 13.1 57 182-240 286-350 (357)
338 2uvk_A YJHT; unknown function, 95.4 0.5 1.7E-05 36.5 13.0 41 224-272 286-326 (357)
339 3sbq_A Nitrous-oxide reductase 95.0 0.069 2.3E-06 43.8 6.8 105 162-270 325-453 (638)
340 4asc_A Kelch repeat and BTB do 94.9 0.89 3.1E-05 34.4 17.1 67 170-238 196-283 (315)
341 2wg3_C Hedgehog-interacting pr 94.6 0.67 2.3E-05 37.5 11.7 105 162-272 16-159 (463)
342 3s25_A Hypothetical 7-bladed b 94.4 1.2 4.2E-05 33.6 12.5 71 164-239 108-183 (302)
343 3s25_A Hypothetical 7-bladed b 93.6 1.8 6.1E-05 32.7 15.6 64 167-234 152-218 (302)
344 2woz_A Kelch repeat and BTB do 93.4 1.9 6.6E-05 32.6 15.4 67 170-238 206-293 (318)
345 2be1_A Serine/threonine-protei 92.8 0.38 1.3E-05 37.0 7.0 68 172-239 11-83 (339)
346 3ott_A Two-component system se 92.4 4.9 0.00017 34.7 23.7 185 26-273 63-252 (758)
347 3qhy_B Beta-lactamase inhibito 92.4 2.6 8.8E-05 31.5 16.5 64 162-231 143-206 (282)
348 4fhn_B Nucleoporin NUP120; pro 91.4 8.1 0.00028 35.3 14.9 37 161-197 239-275 (1139)
349 2zwa_A Leucine carboxyl methyl 91.0 6.9 0.00024 33.5 17.5 66 169-234 499-579 (695)
350 3ott_A Two-component system se 90.0 8.8 0.0003 33.1 24.3 107 162-273 193-299 (758)
351 4gq2_M Nucleoporin NUP120; bet 89.3 4.6 0.00016 36.1 11.3 37 161-197 237-273 (950)
352 3sbq_A Nitrous-oxide reductase 89.0 5.8 0.0002 32.9 10.5 117 93-225 325-461 (638)
353 4gq2_M Nucleoporin NUP120; bet 88.9 2.2 7.7E-05 38.0 9.1 39 203-241 237-275 (950)
354 2wg3_C Hedgehog-interacting pr 87.6 10 0.00034 30.7 15.1 30 26-59 14-44 (463)
355 3f7f_A Nucleoporin NUP120; nuc 86.0 4.6 0.00016 34.5 8.8 36 161-198 223-258 (729)
356 4fhn_B Nucleoporin NUP120; pro 84.5 4.2 0.00014 37.1 8.5 39 203-241 239-277 (1139)
357 3zwu_A Alkaline phosphatase PH 84.4 6.7 0.00023 32.8 9.0 59 204-269 478-548 (592)
358 4a9v_A PHOX; hydrolase, beta-p 82.2 14 0.00047 30.8 9.8 60 203-269 477-548 (592)
359 4a9v_A PHOX; hydrolase, beta-p 79.9 21 0.0007 29.8 10.0 60 160-219 476-548 (592)
360 3zwu_A Alkaline phosphatase PH 79.6 14 0.00047 31.0 9.2 58 162-219 478-548 (592)
361 3f7f_A Nucleoporin NUP120; nuc 79.0 4.2 0.00014 34.8 6.0 37 203-241 223-259 (729)
362 3qhy_B Beta-lactamase inhibito 77.7 19 0.00066 26.7 15.0 65 162-232 182-246 (282)
363 1suu_A DNA gyrase subunit A; t 72.6 29 0.00098 26.3 20.8 203 40-277 7-226 (312)
364 3uc1_A DNA gyrase subunit A; D 72.1 31 0.001 26.4 15.4 99 170-276 108-222 (327)
365 3q6k_A 43.2 kDa salivary prote 68.3 41 0.0014 26.4 13.1 90 181-270 123-242 (381)
366 3b7f_A Glycosyl hydrolase, BNR 66.6 44 0.0015 26.0 11.2 66 162-228 57-143 (394)
367 1zi0_A DNA gyrase subunit A; b 50.8 77 0.0026 23.8 20.1 202 40-276 2-220 (307)
368 3uc1_A DNA gyrase subunit A; D 49.9 83 0.0028 24.0 21.9 120 90-231 94-227 (327)
369 3al9_A Plexin-A2; beta-propell 49.5 44 0.0015 27.7 6.4 66 162-227 402-476 (539)
370 3no0_A DNA gyrase subunit A; D 48.8 79 0.0027 23.4 20.7 162 25-231 23-195 (276)
371 1q47_A Semaphorin 3A; beta pro 48.2 59 0.002 26.5 6.9 66 162-227 406-487 (495)
372 3al9_A Plexin-A2; beta-propell 47.4 83 0.0029 26.0 7.7 69 203-277 401-476 (539)
373 1zvt_A Topoisomerase IV subuni 47.2 80 0.0028 23.0 14.3 69 162-231 86-162 (256)
374 1q47_A Semaphorin 3A; beta pro 47.0 1.2E+02 0.004 24.9 8.9 69 203-277 405-487 (495)
375 1wp5_A Topoisomerase IV; broke 46.9 93 0.0032 23.7 19.5 159 40-231 4-173 (323)
376 3q6k_A 43.2 kDa salivary prote 46.5 1E+02 0.0036 24.1 20.8 167 91-270 152-342 (381)
377 4gz8_A Semaphorin-3A; multi-do 45.6 99 0.0034 26.4 8.0 55 173-227 431-495 (667)
378 3nvq_A Semaphorin-7A; beta-pro 42.2 1.1E+02 0.0038 25.7 7.6 55 173-227 382-444 (590)
379 4gz8_A Semaphorin-3A; multi-do 41.4 1.7E+02 0.0058 25.1 9.8 57 215-277 431-495 (667)
380 3kci_A Probable E3 ubiquitin-p 41.1 1.3E+02 0.0043 23.5 19.5 230 2-278 19-289 (389)
381 3no0_A DNA gyrase subunit A; D 38.9 1.2E+02 0.004 22.4 17.1 170 25-231 67-245 (276)
382 3ol2_B Plexin-B1; beta-propell 38.2 1.7E+02 0.0058 24.2 8.8 23 163-185 439-461 (528)
383 3b7f_A Glycosyl hydrolase, BNR 31.9 1.8E+02 0.006 22.5 12.1 99 172-276 23-141 (394)
384 4hvt_A Ritya.17583.B, post-pro 30.1 2.7E+02 0.0092 24.1 18.6 29 29-61 132-166 (711)
385 3hx6_A Type 4 fimbrial biogene 27.2 2.8E+02 0.0094 23.2 12.7 95 181-278 164-280 (570)
386 3oky_B Putative uncharacterize 26.8 2.8E+02 0.0096 23.2 7.6 67 162-228 405-496 (565)
387 3nvq_A Semaphorin-7A; beta-pro 26.8 2.9E+02 0.0098 23.3 8.3 57 215-277 382-444 (590)
388 1olz_A Semaphorin 4D; developm 24.4 3.4E+02 0.011 23.3 8.3 66 162-227 399-477 (663)
389 3oky_A Plexin-A2; transmembran 23.4 2.3E+02 0.008 24.3 6.7 66 162-227 401-475 (681)
390 1olz_A Semaphorin 4D; developm 22.3 3.3E+02 0.011 23.3 7.4 57 215-277 417-477 (663)
391 1ukf_A Avirulence protein AVRP 21.3 1.2E+02 0.0043 20.8 3.8 34 89-123 117-150 (188)
No 1
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.8e-45 Score=285.84 Aligned_cols=223 Identities=17% Similarity=0.122 Sum_probs=185.3
Q ss_pred CCCceeeeccccccccce--eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643 1 MCGDSTNWDEDAYRKSIL--KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL 78 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 78 (279)
.||.|+|||++..+.... ....+|.+.|++++|+| ++++|++|+.||+|++||+.+
T Consensus 101 ~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp----dg~~l~sgs~d~~i~iwd~~~------------------ 158 (344)
T 4gqb_B 101 DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS----SGTQAVSGSKDICIKVWDLAQ------------------ 158 (344)
T ss_dssp TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT----TSSEEEEEETTSCEEEEETTT------------------
T ss_pred CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC----CCCEEEEEeCCCeEEEEECCC------------------
Confidence 489999999887653222 23457999999999999 999999999999999999998
Q ss_pred eccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643 79 GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP 158 (279)
Q Consensus 79 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (279)
++++..+.+|.+.|.+++|+|++. .+|++++.|++|++||+++.+. ...+.... +
T Consensus 159 -~~~~~~~~~h~~~V~~~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~---~~~~~~~~--------------------~ 213 (344)
T 4gqb_B 159 -QVVLSSYRAHAAQVTCVAASPHKD-SVFLSCSEDNRILLWDTRCPKP---ASQIGCSA--------------------P 213 (344)
T ss_dssp -TEEEEEECCCSSCEEEEEECSSCT-TEEEEEETTSCEEEEETTSSSC---EEECC------------------------
T ss_pred -CcEEEEEcCcCCceEEEEecCCCC-Cceeeeccccccccccccccce---eeeeecce--------------------e
Confidence 677888999999999999999875 3889999999999999875422 11111110 0
Q ss_pred CCCceeEEEcCC-CCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCC-cEEEEecCCCeEEEEeCCCCceE
Q 023643 159 VPENNAIAVDPQ-GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNST-NQIVTGSEDGTARIWDCKSGKCI 236 (279)
Q Consensus 159 ~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~ 236 (279)
...+.+++|+|+ +++|++|+.|+.|++||+++++++..+.+|...|++++|+|++ ++|++|+.|++|+|||++++++.
T Consensus 214 ~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~ 293 (344)
T 4gqb_B 214 GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF 293 (344)
T ss_dssp CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE
T ss_pred eccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE
Confidence 113689999995 4578899999999999999999999999999999999999987 67999999999999999988765
Q ss_pred EEecCCccccccCcceeeeEEEEcCCCC-EEEEEcCcceEEeCC
Q 023643 237 KVIDPVKDKQLKGVISCVSCITLDASES-WLVRVRATNYVILFS 279 (279)
Q Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd 279 (279)
. + .+|...|++++|+|+++ +|++|+.|++|++|+
T Consensus 294 ~-~--------~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 294 R-S--------QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp E-E--------CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred E-E--------cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 3 4 68999999999999986 567899999999995
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8e-44 Score=276.30 Aligned_cols=219 Identities=15% Similarity=0.257 Sum_probs=195.7
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||+|++||++..+ .+..+..|...+.+++|+| ++++|++|+.||.|++|++.+ +
T Consensus 100 ~D~~i~lWd~~~~~--~~~~~~~~~~~~~~~~~sp----dg~~l~~g~~dg~v~i~~~~~-------------------~ 154 (321)
T 3ow8_A 100 LDAHIRLWDLENGK--QIKSIDAGPVDAWTLAFSP----DSQYLATGTHVGKVNIFGVES-------------------G 154 (321)
T ss_dssp TTSEEEEEETTTTE--EEEEEECCTTCCCCEEECT----TSSEEEEECTTSEEEEEETTT-------------------C
T ss_pred CCCcEEEEECCCCC--EEEEEeCCCccEEEEEECC----CCCEEEEEcCCCcEEEEEcCC-------------------C
Confidence 48999999988764 4667788889999999999 999999999999999999998 4
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
+....+..|...|.+++|+|+++ +|++++.||.|++||+++. +....+.++. .
T Consensus 155 ~~~~~~~~~~~~v~~~~~spdg~--~lasg~~dg~i~iwd~~~~---~~~~~~~~h~----------------------~ 207 (321)
T 3ow8_A 155 KKEYSLDTRGKFILSIAYSPDGK--YLASGAIDGIINIFDIATG---KLLHTLEGHA----------------------M 207 (321)
T ss_dssp SEEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTT---EEEEEECCCS----------------------S
T ss_pred ceeEEecCCCceEEEEEECCCCC--EEEEEcCCCeEEEEECCCC---cEEEEEcccC----------------------C
Confidence 55566778889999999999998 9999999999999998653 2222222211 1
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
.|++++|+|++++|++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||+++++++..+
T Consensus 208 ~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~- 286 (321)
T 3ow8_A 208 PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF- 286 (321)
T ss_dssp CCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-
T ss_pred ceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE-
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+|...|.+++|+|++++|++++.||.|++||
T Consensus 287 -------~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 287 -------FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp -------CCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred -------cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 68889999999999999999999999999997
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.3e-44 Score=277.79 Aligned_cols=221 Identities=15% Similarity=0.160 Sum_probs=197.0
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||+|++|+.+..+......+.+|...|.+++|+| ++.++++++.|++|++||+.+ +
T Consensus 56 ~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~----~~~~l~s~s~D~~i~lWd~~~-------------------~ 112 (321)
T 3ow8_A 56 LDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH----TLPIAASSSLDAHIRLWDLEN-------------------G 112 (321)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECS----SSSEEEEEETTSEEEEEETTT-------------------T
T ss_pred CCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECC----CCCEEEEEeCCCcEEEEECCC-------------------C
Confidence 48999999988765555667889999999999999 899999999999999999998 5
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
+.+..+..|...+.+++|+|+++ +|++++.||.|++|+++... ....+..+ ..
T Consensus 113 ~~~~~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~---~~~~~~~~----------------------~~ 165 (321)
T 3ow8_A 113 KQIKSIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGK---KEYSLDTR----------------------GK 165 (321)
T ss_dssp EEEEEEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCS---EEEEEECS----------------------SS
T ss_pred CEEEEEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCc---eeEEecCC----------------------Cc
Confidence 66677788888999999999998 99999999999999986532 12222111 11
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
.+.+++|+|++++|++++.|+.|++||+++++++..+++|..+|.+++|+|++++|++++.|+.|++||+++++....+
T Consensus 166 ~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~- 244 (321)
T 3ow8_A 166 FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL- 244 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEE-
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEE-
Confidence 3789999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+|...|.+++|+|++.+|++|+.|++|++||
T Consensus 245 -------~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd 276 (321)
T 3ow8_A 245 -------SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWD 276 (321)
T ss_dssp -------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred -------cCCCCceEEEEECCCCCEEEEEeCCCcEEEEe
Confidence 78889999999999999999999999999996
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.4e-43 Score=281.68 Aligned_cols=219 Identities=18% Similarity=0.289 Sum_probs=196.7
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||+|++||+.+.. ....+.+|...|.+++|+| ++++|++|+.||+|++||+.+ .
T Consensus 128 ~Dg~i~vwd~~~~~--~~~~l~~h~~~V~~v~~~~----~~~~l~sgs~D~~i~iwd~~~-------------------~ 182 (410)
T 1vyh_C 128 EDATIKVWDYETGD--FERTLKGHTDSVQDISFDH----SGKLLASCSADMTIKLWDFQG-------------------F 182 (410)
T ss_dssp SSSCEEEEETTTCC--CCEEECCCSSCEEEEEECT----TSSEEEEEETTSCCCEEETTS-------------------S
T ss_pred CCCeEEEEECCCCc--EEEEEeccCCcEEEEEEcC----CCCEEEEEeCCCeEEEEeCCC-------------------C
Confidence 48999999988774 4678889999999999999 899999999999999999987 5
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
+.+..+.+|...|.+++|+|++. +|++++.|++|++||+++. .....+.++. .
T Consensus 183 ~~~~~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~---~~~~~~~~h~----------------------~ 235 (410)
T 1vyh_C 183 ECIRTMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTG---YCVKTFTGHR----------------------E 235 (410)
T ss_dssp CEEECCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTC---CEEEEEECCS----------------------S
T ss_pred ceeEEEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCC---cEEEEEeCCC----------------------c
Confidence 66778889999999999999998 9999999999999998653 2222333221 1
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCC--------------------CcEEEEec
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNS--------------------TNQIVTGS 220 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~--------------------~~~l~~~~ 220 (279)
.|.++.++|++.++++++.|+.|++||++++++...+.+|...|.+++|+|+ +.+|++|+
T Consensus 236 ~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs 315 (410)
T 1vyh_C 236 WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 315 (410)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe
Confidence 3789999999999999999999999999999999999999999999999996 67899999
Q ss_pred CCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 221 EDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 221 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.|+.|++||+++++++..+ .+|...|.+++|+|++++|++|+.|+.|++||
T Consensus 316 ~D~~i~iwd~~~~~~~~~~--------~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd 366 (410)
T 1vyh_C 316 RDKTIKMWDVSTGMCLMTL--------VGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366 (410)
T ss_dssp TTSEEEEEETTTTEEEEEE--------ECCSSCEEEEEECSSSSCEEEEETTTEEEEEC
T ss_pred CCCeEEEEECCCCceEEEE--------ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 9999999999999999888 68889999999999999999999999999997
No 5
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.9e-43 Score=281.33 Aligned_cols=219 Identities=20% Similarity=0.323 Sum_probs=195.5
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||+|++||+++. ..+..+.+|...|.+++|+| ++++|++|+.|++|++||+.+ +
T Consensus 170 ~D~~i~iwd~~~~--~~~~~~~~h~~~V~~v~~~p----~~~~l~s~s~D~~i~~wd~~~-------------------~ 224 (410)
T 1vyh_C 170 ADMTIKLWDFQGF--ECIRTMHGHDHNVSSVSIMP----NGDHIVSASRDKTIKMWEVQT-------------------G 224 (410)
T ss_dssp TTSCCCEEETTSS--CEEECCCCCSSCEEEEEECS----SSSEEEEEETTSEEEEEETTT-------------------C
T ss_pred CCCeEEEEeCCCC--ceeEEEcCCCCCEEEEEEeC----CCCEEEEEeCCCeEEEEECCC-------------------C
Confidence 4899999998876 44778889999999999999 899999999999999999998 5
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
.++..+.+|...|.++.|+|++. +|++++.|++|++||+++. .....+.++. .
T Consensus 225 ~~~~~~~~h~~~v~~~~~~~~g~--~l~s~s~D~~v~vwd~~~~---~~~~~~~~h~----------------------~ 277 (410)
T 1vyh_C 225 YCVKTFTGHREWVRMVRPNQDGT--LIASCSNDQTVRVWVVATK---ECKAELREHR----------------------H 277 (410)
T ss_dssp CEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTC---CEEEEECCCS----------------------S
T ss_pred cEEEEEeCCCccEEEEEECCCCC--EEEEEcCCCeEEEEECCCC---ceeeEecCCC----------------------c
Confidence 66778889999999999999998 9999999999999998643 2222222211 1
Q ss_pred CceeEEEcCC--------------------CCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEec
Q 023643 161 ENNAIAVDPQ--------------------GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS 220 (279)
Q Consensus 161 ~i~~~~~~~~--------------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 220 (279)
.|.+++|+|+ +.+|++|+.|+.|++||+++++++..+.+|...|++++|+|++++|++|+
T Consensus 278 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s 357 (410)
T 1vyh_C 278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 357 (410)
T ss_dssp CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE
T ss_pred eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEe
Confidence 3678888885 66899999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 221 EDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 221 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.||.|++||+++++++..+ .+|...|++++|+|++.+|++|+.||+|++|+
T Consensus 358 ~D~~i~vwd~~~~~~~~~~--------~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 358 DDKTLRVWDYKNKRCMKTL--------NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp TTTEEEEECCTTSCCCEEE--------ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCeEEEEECCCCceEEEE--------cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 9999999999999998888 68889999999999999999999999999997
No 6
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.2e-43 Score=277.74 Aligned_cols=223 Identities=13% Similarity=0.138 Sum_probs=183.5
Q ss_pred CCCceeeecccccccccee--eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643 1 MCGDSTNWDEDAYRKSILK--EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL 78 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 78 (279)
.||+|+|||+...+..... ...+|...|++++|+| ++++|++|+.||+|++||+.+
T Consensus 113 ~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp----dg~~l~sgs~dg~v~iwd~~~------------------ 170 (357)
T 4g56_B 113 DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS----DGTQAVSGGKDFSVKVWDLSQ------------------ 170 (357)
T ss_dssp TTSCEEEC--------CCCCEEECCCSSCEEEEEECS----SSSEEEEEETTSCEEEEETTT------------------
T ss_pred CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC----CCCEEEEEeCCCeEEEEECCC------------------
Confidence 4899999998876533322 3447899999999999 999999999999999999998
Q ss_pred eccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643 79 GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP 158 (279)
Q Consensus 79 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (279)
++.+..+.+|...|.+++|+|++. .++++++.|+.|++||+++....... .... +
T Consensus 171 -~~~~~~~~~h~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~-~~~~----------------------~ 225 (357)
T 4g56_B 171 -KAVLKSYNAHSSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRI-DFCA----------------------S 225 (357)
T ss_dssp -TEEEEEECCCSSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBC-CCTT----------------------C
T ss_pred -CcEEEEEcCCCCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeee-eecc----------------------c
Confidence 677788889999999999999875 37999999999999998754221111 1111 1
Q ss_pred CCCceeEEEcCCC-CeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCC-cEEEEecCCCeEEEEeCCCCceE
Q 023643 159 VPENNAIAVDPQG-GAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNST-NQIVTGSEDGTARIWDCKSGKCI 236 (279)
Q Consensus 159 ~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~ 236 (279)
...+.+++|+|++ .+|++|+.|+.|++||+++++++..+.+|...|++++|+|++ ++|++|+.|++|+|||+++++.+
T Consensus 226 ~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~ 305 (357)
T 4g56_B 226 DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF 305 (357)
T ss_dssp CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE
T ss_pred cccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe
Confidence 1237899999975 578899999999999999999999999999999999999986 67999999999999999999887
Q ss_pred EEecCCccccccCcceeeeEEEEcC-CCCEEEEEcCcceEEeCC
Q 023643 237 KVIDPVKDKQLKGVISCVSCITLDA-SESWLVRVRATNYVILFS 279 (279)
Q Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd 279 (279)
..+ +|...|++++|+| ++.+|++|+.||+|++|+
T Consensus 306 ~~~---------~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 306 RDL---------SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp EEC---------CCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEC---------CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence 654 7889999999998 799999999999999996
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.6e-43 Score=270.25 Aligned_cols=220 Identities=16% Similarity=0.258 Sum_probs=190.5
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.|++||+++.. .+..+..|..+|.+++|+| ++++|++|+.|++|++||+.+ +
T Consensus 33 ~dg~v~lWd~~~~~--~~~~~~~~~~~v~~~~~~~----~~~~l~s~s~d~~i~vwd~~~-------------------~ 87 (304)
T 2ynn_A 33 YSGRVELWNYETQV--EVRSIQVTETPVRAGKFIA----RKNWIIVGSDDFRIRVFNYNT-------------------G 87 (304)
T ss_dssp TTSEEEEEETTTTE--EEEEEECCSSCEEEEEEEG----GGTEEEEEETTSEEEEEETTT-------------------C
T ss_pred CCCcEEEEECCCCc--eeEEeeccCCcEEEEEEeC----CCCEEEEECCCCEEEEEECCC-------------------C
Confidence 48999999988763 4778888999999999999 899999999999999999998 6
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
+.+..+.+|.+.|.+++|+|+++ +|++|+.|++|++||++... .....+.++ ..
T Consensus 88 ~~~~~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~--~~~~~~~~h----------------------~~ 141 (304)
T 2ynn_A 88 EKVVDFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNW--ALEQTFEGH----------------------EH 141 (304)
T ss_dssp CEEEEEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTT--EEEEEECCC----------------------CS
T ss_pred cEEEEEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCc--chhhhhccc----------------------CC
Confidence 67778899999999999999998 99999999999999986421 111122221 12
Q ss_pred CceeEEEcC-CCCeEEEecCCCeEEEEecCCCcEEEEee-cCCcceEEEEEcC--CCcEEEEecCCCeEEEEeCCCCceE
Q 023643 161 ENNAIAVDP-QGGAIFSAAGDSCAYCWDVESSRIKMVFK-GHSDYLHCIVARN--STNQIVTGSEDGTARIWDCKSGKCI 236 (279)
Q Consensus 161 ~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~ 236 (279)
.|.+++|+| ++..|++|+.|+.|++||++++.+...+. +|...+..++|+| ++.+|++|+.|++|++||+++++++
T Consensus 142 ~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~ 221 (304)
T 2ynn_A 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV 221 (304)
T ss_dssp CEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEE
T ss_pred cEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccc
Confidence 479999999 57899999999999999998877665554 4667899999987 6789999999999999999999999
Q ss_pred EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
..+ .+|...|.+++|+|++++|++|+.||+|++||
T Consensus 222 ~~~--------~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd 256 (304)
T 2ynn_A 222 ATL--------EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256 (304)
T ss_dssp EEE--------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred eee--------CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 998 78889999999999999999999999999996
No 8
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.3e-41 Score=259.97 Aligned_cols=230 Identities=16% Similarity=0.211 Sum_probs=184.3
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||+|+|||+++.....+..+.+|.++|++++|+|. .++++||+|+.||+|++||+.++. .
T Consensus 29 ~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~--~~g~~l~s~s~D~~v~iWd~~~~~-----------------~ 89 (297)
T 2pm7_B 29 SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP--KFGTILASCSYDGKVMIWKEENGR-----------------W 89 (297)
T ss_dssp TTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCG--GGCSEEEEEETTTEEEEEEBSSSC-----------------B
T ss_pred CCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCC--CcCCEEEEEcCCCEEEEEEcCCCc-----------------e
Confidence 489999999876544567788999999999999861 137899999999999999998632 1
Q ss_pred cccccccCCccCeEEEEecCC--CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGG--NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP 158 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~--~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (279)
..+..+.+|...|.+++|+|+ +. +|++++.|+.|++||++...... ...+.++
T Consensus 90 ~~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~-~~~~~~h---------------------- 144 (297)
T 2pm7_B 90 SQIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTS-PIIIDAH---------------------- 144 (297)
T ss_dssp CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBC-CEEEECC----------------------
T ss_pred EEEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCcee-eeeeecc----------------------
Confidence 344566789999999999997 66 99999999999999987532111 1111111
Q ss_pred CCCceeEEEcCC-------------CCeEEEecCCCeEEEEecCCCc----EEEEeecCCcceEEEEEcCCC---cEEEE
Q 023643 159 VPENNAIAVDPQ-------------GGAIFSAAGDSCAYCWDVESSR----IKMVFKGHSDYLHCIVARNST---NQIVT 218 (279)
Q Consensus 159 ~~~i~~~~~~~~-------------~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~i~~i~~~~~~---~~l~~ 218 (279)
...|.+++|+|+ +++|++|+.|+.|++||+++++ ....+.+|...|.+++|+|++ .+|++
T Consensus 145 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las 224 (297)
T 2pm7_B 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS 224 (297)
T ss_dssp SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEE
Confidence 123789999986 4689999999999999998765 667888999999999999984 89999
Q ss_pred ecCCCeEEEEeCCCCc--eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 219 GSEDGTARIWDCKSGK--CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 219 ~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
++.|++|++||++... ....... ...|...|.+++|+|++++||+++.|+.|++|+
T Consensus 225 ~s~D~~v~iWd~~~~~~~~~~~~~~-----~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 225 VSQDRTCIIWTQDNEQGPWKKTLLK-----EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp EETTSCEEEEEESSTTSCCEEEESS-----SSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred EECCCcEEEEEeCCCCCccceeeee-----cccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 9999999999998743 1222211 036778899999999999999999999999995
No 9
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2e-41 Score=265.15 Aligned_cols=220 Identities=16% Similarity=0.214 Sum_probs=190.0
Q ss_pred CCCceeeecccccc--ccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643 1 MCGDSTNWDEDAYR--KSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL 78 (279)
Q Consensus 1 ~dG~v~iw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 78 (279)
.||.|++|++.... ......+.+|...|.++.|++ ++ .+++++.|++|++||+.+
T Consensus 117 ~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~-~l~s~s~d~~i~~wd~~~------------------ 173 (340)
T 1got_B 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD----DN-QIVTSSGDTTCALWDIET------------------ 173 (340)
T ss_dssp TTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEE----TT-EEEEEETTSCEEEEETTT------------------
T ss_pred CCCeEEEEECccCCCcceeEEEecCCCccEEEEEECC----CC-cEEEEECCCcEEEEECCC------------------
Confidence 48999999987643 234567788999999999998 54 589999999999999998
Q ss_pred eccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643 79 GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP 158 (279)
Q Consensus 79 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (279)
++.+..+.+|.+.|.+++|+|++. +|++++.|++|++||+++. .....+.++
T Consensus 174 -~~~~~~~~~h~~~v~~~~~~~~~~--~l~sg~~d~~v~~wd~~~~---~~~~~~~~h---------------------- 225 (340)
T 1got_B 174 -GQQTTTFTGHTGDVMSLSLAPDTR--LFVSGACDASAKLWDVREG---MCRQTFTGH---------------------- 225 (340)
T ss_dssp -TEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTC---SEEEEECCC----------------------
T ss_pred -CcEEEEEcCCCCceEEEEECCCCC--EEEEEeCCCcEEEEECCCC---eeEEEEcCC----------------------
Confidence 566778889999999999999998 9999999999999998653 222222221
Q ss_pred CCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec--CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE
Q 023643 159 VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG--HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI 236 (279)
Q Consensus 159 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~ 236 (279)
...|++++|+|++++|++|+.|+.|++||+++++.+..+.. +...|.+++|+|++++|++|+.|+.|++||+.+++.+
T Consensus 226 ~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~ 305 (340)
T 1got_B 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEe
Confidence 12479999999999999999999999999999888877753 3357999999999999999999999999999999998
Q ss_pred EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
..+ .+|...|.+++|+|++.+|++|+.|+.|++||
T Consensus 306 ~~~--------~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 306 GVL--------AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEE--------ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eEe--------ecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 888 78999999999999999999999999999997
No 10
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.9e-41 Score=261.88 Aligned_cols=247 Identities=13% Similarity=0.160 Sum_probs=196.5
Q ss_pred CCCceeeeccccccc---cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccccee
Q 023643 1 MCGDSTNWDEDAYRK---SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQL 77 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 77 (279)
.||+|++|++..... ..+..+.+|...|.+++|+| ++.+|++|+.|++|++||+.+
T Consensus 38 ~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~----dg~~l~s~s~D~~v~~wd~~~----------------- 96 (319)
T 3frx_A 38 RDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA----DGAYALSASWDKTLRLWDVAT----------------- 96 (319)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECT----TSSEEEEEETTSEEEEEETTT-----------------
T ss_pred CCccEEEecCCCCCccccccceEEeCCcccEEEEEECC----CCCEEEEEeCCCEEEEEECCC-----------------
Confidence 489999999865432 23567889999999999999 999999999999999999998
Q ss_pred eeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEee------------
Q 023643 78 LGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLV------------ 145 (279)
Q Consensus 78 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 145 (279)
++.+..+.+|..+|.+++|+|++. +|++++.|++|++||++.. ....+.++ ...+..+.
T Consensus 97 --~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~~~----~~~~~~~h-~~~v~~~~~~~~~~~~~~~~ 167 (319)
T 3frx_A 97 --GETYQRFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIKGQ----CLATLLGH-NDWVSQVRVVPNEKADDDSV 167 (319)
T ss_dssp --TEEEEEEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETTSC----EEEEECCC-SSCEEEEEECCC------CC
T ss_pred --CCeeEEEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECCCC----eEEEEecc-CCcEEEEEEccCCCCCCCcc
Confidence 667778889999999999999998 9999999999999998632 12222211 11111110
Q ss_pred ------cCCCCCcc---------ccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEc
Q 023643 146 ------NHQHKGPW---------GALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVAR 210 (279)
Q Consensus 146 ------~~~~~~~~---------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~ 210 (279)
....-..| ....+...|.+++|+|++++|++++.|+.|++||+.+++.+..+.. ...|.+++|+
T Consensus 168 ~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~s 246 (319)
T 3frx_A 168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFS 246 (319)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEEC
T ss_pred EEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEc
Confidence 01111111 1234567899999999999999999999999999999999998875 4689999999
Q ss_pred CCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 211 NSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 211 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
|++.+|++++.+ .+++|++..+..+..+..........|...+.+++|+|+|++|++|+.||.|++||
T Consensus 247 p~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 247 PNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp SSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 999999988755 59999999888877776543222345677899999999999999999999999996
No 11
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=9.7e-41 Score=257.28 Aligned_cols=218 Identities=16% Similarity=0.197 Sum_probs=185.2
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.|++||++..+ .+..+.+|...|.+++|+| ++.+|++|+.||+|++||+.+. .
T Consensus 75 ~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~----~~~~l~sgs~D~~v~lWd~~~~------------------~ 130 (304)
T 2ynn_A 75 DDFRIRVFNYNTGE--KVVDFEAHPDYIRSIAVHP----TKPYVLSGSDDLTVKLWNWENN------------------W 130 (304)
T ss_dssp TTSEEEEEETTTCC--EEEEEECCSSCEEEEEECS----SSSEEEEEETTSCEEEEEGGGT------------------T
T ss_pred CCCEEEEEECCCCc--EEEEEeCCCCcEEEEEEcC----CCCEEEEECCCCeEEEEECCCC------------------c
Confidence 48999999988774 4778889999999999999 8999999999999999999863 2
Q ss_pred cccccccCCccCeEEEEecCC-CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGG-NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV 159 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (279)
.....+.+|...|.+++|+|. +. +|++|+.|++|++||++.... ...+...+.
T Consensus 131 ~~~~~~~~h~~~v~~v~~~p~~~~--~l~sgs~D~~v~iwd~~~~~~---~~~~~~~~~--------------------- 184 (304)
T 2ynn_A 131 ALEQTFEGHEHFVMCVAFNPKDPS--TFASGCLDRTVKVWSLGQSTP---NFTLTTGQE--------------------- 184 (304)
T ss_dssp EEEEEECCCCSCEEEEEECTTCTT--EEEEEETTSEEEEEETTCSSC---SEEEECCCT---------------------
T ss_pred chhhhhcccCCcEEEEEECCCCCC--EEEEEeCCCeEEEEECCCCCc---cceeccCCc---------------------
Confidence 444667889999999999994 55 999999999999999864321 111211111
Q ss_pred CCceeEEEcC--CCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEE
Q 023643 160 PENNAIAVDP--QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIK 237 (279)
Q Consensus 160 ~~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~ 237 (279)
..+..+.|+| ++.+|++++.|+.|++||+++++++..+.+|...|.+++|+|++++|++|+.||+|++||+++++.+.
T Consensus 185 ~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~ 264 (304)
T 2ynn_A 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264 (304)
T ss_dssp TCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceee
Confidence 1367888876 67799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCccccccCcceeeeEEEEcCCCC--EEEEEcCcceEE
Q 023643 238 VIDPVKDKQLKGVISCVSCITLDASES--WLVRVRATNYVI 276 (279)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~ 276 (279)
.+ ..|...+.+++|+|++. ++++|+.||.+.
T Consensus 265 ~~--------~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~ 297 (304)
T 2ynn_A 265 TL--------NVGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (304)
T ss_dssp EE--------CCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred ec--------cCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence 98 67778899999999875 688888877554
No 12
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=9.6e-41 Score=261.25 Aligned_cols=224 Identities=18% Similarity=0.302 Sum_probs=191.4
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.|++||..... .+..+..|...|.+++|+| ++++|++|+.|+.|++|++.+.... .
T Consensus 75 ~Dg~v~iWd~~~~~--~~~~~~~~~~~v~~~~~s~----~~~~l~s~~~d~~v~iw~~~~~~~~---------------~ 133 (340)
T 1got_B 75 QDGKLIIWDSYTTN--KVHAIPLRSSWVMTCAYAP----SGNYVACGGLDNICSIYNLKTREGN---------------V 133 (340)
T ss_dssp TTTEEEEEETTTCC--EEEEEECSSSCEEEEEECT----TSSEEEEEETTCEEEEEETTTCSBS---------------C
T ss_pred CCCcEEEEECCCCC--cceEeecCCccEEEEEECC----CCCEEEEEeCCCeEEEEECccCCCc---------------c
Confidence 48999999987764 4667888999999999999 8999999999999999999864211 1
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
.....+.+|.+.|.++.|++++ .+++++.|++|++||+++. .....+.++. .
T Consensus 134 ~~~~~~~~h~~~v~~~~~~~~~---~l~s~s~d~~i~~wd~~~~---~~~~~~~~h~----------------------~ 185 (340)
T 1got_B 134 RVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETG---QQTTTFTGHT----------------------G 185 (340)
T ss_dssp EEEEEEECCSSCEEEEEEEETT---EEEEEETTSCEEEEETTTT---EEEEEECCCS----------------------S
T ss_pred eeEEEecCCCccEEEEEECCCC---cEEEEECCCcEEEEECCCC---cEEEEEcCCC----------------------C
Confidence 3345677899999999999876 6999999999999998653 2222222221 2
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
.|.+++|+|+++++++|+.|+.|++||+++++++..+.+|...|.+++|+|++++|++|+.||+|++||+++++.+..+.
T Consensus 186 ~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~ 265 (340)
T 1got_B 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999998887764
Q ss_pred CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
. ..+...|++++|+|++++|++|+.|+.|++||
T Consensus 266 ~------~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd 298 (340)
T 1got_B 266 H------DNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298 (340)
T ss_dssp C------TTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred c------CCcccceEEEEECCCCCEEEEECCCCeEEEEE
Confidence 2 23445799999999999999999999999996
No 13
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-41 Score=263.51 Aligned_cols=231 Identities=14% Similarity=0.238 Sum_probs=177.9
Q ss_pred CCCceeeeccccccccceeee-ee-cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643 1 MCGDSTNWDEDAYRKSILKER-EI-LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL 78 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 78 (279)
.||.|++||++......+..+ .. |...|.+++|+| ++++|++|+.|++|++|++...... ..
T Consensus 32 ~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp----~~~~las~s~D~~v~iw~~~~~~~~------------~~ 95 (330)
T 2hes_X 32 TDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP----HTSLLAAGSFDSTVSIWAKEESADR------------TF 95 (330)
T ss_dssp SSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECT----TSSEEEEEETTSCEEEEEC-------------------C
T ss_pred CCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECC----CCCEEEEEeCCCcEEEEEcccCcCc------------cc
Confidence 489999999876533334444 33 999999999999 8999999999999999998642100 00
Q ss_pred eccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCcc-CcceeeeccCcccceEEeecCCCCCccccCC
Q 023643 79 GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTE-SKVPINLQGNHVKPVLDLVNHQHKGPWGALS 157 (279)
Q Consensus 79 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (279)
..+.+..+.+|.++|.+++|+|+++ +|++++.|++|++||++.... ......+.++
T Consensus 96 ~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h--------------------- 152 (330)
T 2hes_X 96 EMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEYECISVLQEH--------------------- 152 (330)
T ss_dssp CCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCCEEEEEECCC---------------------
T ss_pred cceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCeEEEEEeccC---------------------
Confidence 0344567789999999999999998 999999999999999853211 1122222221
Q ss_pred CCCCceeEEEcCCCCeEEEecCCCeEEEEecCCC--cEEEEeecCCcceEEEEEcCC--CcEEEEecCCCeEEEEeCCCC
Q 023643 158 PVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS--RIKMVFKGHSDYLHCIVARNS--TNQIVTGSEDGTARIWDCKSG 233 (279)
Q Consensus 158 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~vwd~~~~ 233 (279)
...|.+++|+|++.+|++++.|+.|++||..++ +++..+.+|...|.+++|+|+ +.+|++++.|++|++||++.+
T Consensus 153 -~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 153 -SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp -SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred -CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 124799999999999999999999999999876 678889999999999999998 778999999999999998754
Q ss_pred --------ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 234 --------KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 234 --------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+...+. ..|...|.+++|++++ +|++++.||.|++||
T Consensus 232 ~~~~~~~~~~~~~~~-------~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~ 277 (330)
T 2hes_X 232 DEDDQQEWVCEAILP-------DVHKRQVYNVAWGFNG-LIASVGADGVLAVYE 277 (330)
T ss_dssp CTTSCEEEEEEEECC-------SCCSSCEEEEEECTTS-CEEEEETTSCEEEEE
T ss_pred CccccceeEEeeecc-------cccccceEEEEEcCCC-EEEEEeCCCEEEEEE
Confidence 2333331 2388899999999765 799999999999996
No 14
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.4e-40 Score=261.52 Aligned_cols=223 Identities=15% Similarity=0.192 Sum_probs=190.3
Q ss_pred CCCceeeecccccc----ccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccce
Q 023643 1 MCGDSTNWDEDAYR----KSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQ 76 (279)
Q Consensus 1 ~dG~v~iw~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 76 (279)
.||.+++|++.... ......+..|...|.+++|+| ++..|++++.|++|++||+++
T Consensus 126 ~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~t~s~D~~v~lwd~~~---------------- 185 (354)
T 2pbi_B 126 LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN----SDMQILTASGDGTCALWDVES---------------- 185 (354)
T ss_dssp TTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECS----SSSEEEEEETTSEEEEEETTT----------------
T ss_pred CCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeC----CCCEEEEEeCCCcEEEEeCCC----------------
Confidence 47899999875321 234556778999999999999 899999999999999999998
Q ss_pred eeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643 77 LLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL 156 (279)
Q Consensus 77 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (279)
++.+..+.+|...|.+++|+|+..+.+|++|+.||+|++||+++. .....+.++
T Consensus 186 ---~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~---~~~~~~~~h-------------------- 239 (354)
T 2pbi_B 186 ---GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG---QCVQAFETH-------------------- 239 (354)
T ss_dssp ---CCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC---CEEEEECCC--------------------
T ss_pred ---CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC---cEEEEecCC--------------------
Confidence 667788889999999999998533349999999999999998753 222222221
Q ss_pred CCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecC--CcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCc
Q 023643 157 SPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGH--SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGK 234 (279)
Q Consensus 157 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~ 234 (279)
...|++++|+|++.+|++++.|++|++||+++++.+..+..+ ...+.+++|+|++++|++|+.|+.|++||+.+++
T Consensus 240 --~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 240 --ESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS 317 (354)
T ss_dssp --SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred --CCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc
Confidence 124799999999999999999999999999998887776543 3478999999999999999999999999999999
Q ss_pred eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 235 CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+..+ .+|...|++++|+|++++|++|+.|++|++|+
T Consensus 318 ~~~~l--------~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 318 RVSIL--------FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEE--------CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred eEEEE--------ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 88888 68999999999999999999999999999997
No 15
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3e-41 Score=264.56 Aligned_cols=227 Identities=19% Similarity=0.216 Sum_probs=185.4
Q ss_pred CCCceeeecccccccccee-eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643 1 MCGDSTNWDEDAYRKSILK-EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG 79 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 79 (279)
.||.|+|||+++....... ...+|...|.+++|+| ++++|++|+.|++|++|++....
T Consensus 36 ~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp----~g~~l~s~s~D~~v~iw~~~~~~----------------- 94 (345)
T 3fm0_A 36 GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP----CGNYLASASFDATTCIWKKNQDD----------------- 94 (345)
T ss_dssp TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT----TSSEEEEEETTSCEEEEEECCC------------------
T ss_pred CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC----CCCEEEEEECCCcEEEEEccCCC-----------------
Confidence 4899999998876432222 3367999999999999 99999999999999999987632
Q ss_pred ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643 80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV 159 (279)
Q Consensus 80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (279)
.+.+..+.+|..+|.+++|+|+++ +|++++.|++|++||++..........+.++ .
T Consensus 95 ~~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h----------------------~ 150 (345)
T 3fm0_A 95 FECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSVLNSH----------------------T 150 (345)
T ss_dssp EEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEEECCC----------------------C
T ss_pred eEEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEEecCc----------------------C
Confidence 245667889999999999999998 9999999999999998754222222222221 1
Q ss_pred CCceeEEEcCCCCeEEEecCCCeEEEEecCCCc--EEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC----
Q 023643 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSR--IKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG---- 233 (279)
Q Consensus 160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~---- 233 (279)
..|.+++|+|++.+|++++.|+.|++||.++++ +...+.+|...|++++|+|++++|++++.|++|++||....
T Consensus 151 ~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~ 230 (345)
T 3fm0_A 151 QDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQ 230 (345)
T ss_dssp SCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTT
T ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCc
Confidence 247899999999999999999999999998775 45678899999999999999999999999999999996432
Q ss_pred -----------ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 234 -----------KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 234 -----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+++..+. ..|...|.+++|+|++..|++++.|+.|++|+
T Consensus 231 ~~~~~~~~~~~~~~~~~~-------~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~ 280 (345)
T 3fm0_A 231 GVACSGSDPSWKCICTLS-------GFHSRTIYDIAWCQLTGALATACGDDAIRVFQ 280 (345)
T ss_dssp CCCCC---CEEEEEEEEC-------SSCSSCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred cceeeccCCccceeEEec-------CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 1222331 23788999999999999999999999999995
No 16
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=9.7e-42 Score=264.22 Aligned_cols=230 Identities=17% Similarity=0.205 Sum_probs=182.2
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||+|+|||++......+..+.+|..+|++++|+|. .++++|++|+.|++|++||+.++. .
T Consensus 33 ~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~--~~~~~l~s~s~D~~v~iWd~~~~~-----------------~ 93 (316)
T 3bg1_A 33 SDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHP--MYGNILASCSYDRKVIIWREENGT-----------------W 93 (316)
T ss_dssp TTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCG--GGSSCEEEEETTSCEEEECCSSSC-----------------C
T ss_pred CCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCC--CCCCEEEEEECCCEEEEEECCCCc-----------------c
Confidence 489999999887654456788899999999999861 137899999999999999998631 1
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
.....+.+|...|.+++|+|+..+.+|++++.|++|++||++............+ + ..
T Consensus 94 ~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~-h---------------------~~ 151 (316)
T 3bg1_A 94 EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNA-H---------------------TI 151 (316)
T ss_dssp CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTS-S---------------------SS
T ss_pred eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecc-c---------------------cC
Confidence 3345677899999999999983223999999999999999864311100111111 1 12
Q ss_pred CceeEEEcCC-----------------CCeEEEecCCCeEEEEecCCC---cEEEEeecCCcceEEEEEcCCC----cEE
Q 023643 161 ENNAIAVDPQ-----------------GGAIFSAAGDSCAYCWDVESS---RIKMVFKGHSDYLHCIVARNST----NQI 216 (279)
Q Consensus 161 ~i~~~~~~~~-----------------~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~i~~~~~~----~~l 216 (279)
.+.+++|+|+ +.+|++|+.|+.|++||++.. +++..+.+|...|.+++|+|++ ++|
T Consensus 152 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~l 231 (316)
T 3bg1_A 152 GCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTI 231 (316)
T ss_dssp CBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEE
T ss_pred CcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceE
Confidence 3678888886 468999999999999999754 4677889999999999999986 899
Q ss_pred EEecCCCeEEEEeCCCCc----eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 217 VTGSEDGTARIWDCKSGK----CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 217 ~~~~~d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
++++.|++|++||+++.. ....+ ..|...|.+++|+|++++|++++.|+.|++|+
T Consensus 232 as~s~D~~v~iw~~~~~~~~~~~~~~~--------~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 232 ASCSQDGRVFIWTCDDASSNTWSPKLL--------HKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp EEEETTCEEEEEECSSTTCCCCBCCEE--------EECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred EEEcCCCeEEEEEccCccccchhhhhh--------hcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 999999999999987631 11223 46778999999999999999999999999995
No 17
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.4e-40 Score=258.70 Aligned_cols=223 Identities=15% Similarity=0.221 Sum_probs=175.0
Q ss_pred CCceeeeccccc---------cccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCc
Q 023643 2 CGDSTNWDEDAY---------RKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNS 72 (279)
Q Consensus 2 dG~v~iw~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 72 (279)
|+++|+||.... ..........+...|.+++|+| + ..|++|+.||+|+|||+.+++...
T Consensus 50 d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----d-~~l~~~s~dg~v~lWd~~~~~~~~------- 117 (344)
T 4gqb_B 50 SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG----E-RGILVASDSGAVELWELDENETLI------- 117 (344)
T ss_dssp CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEET----T-TEEEEEETTSEEEEEEECTTSSCE-------
T ss_pred CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeC----C-CeEEEEECCCEEEEEeccCCCcee-------
Confidence 567888873211 0111222334667899999999 6 578899999999999998843211
Q ss_pred ccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCc
Q 023643 73 KVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGP 152 (279)
Q Consensus 73 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (279)
.....+.+|.+.|.+++|+|+++ +|++|+.|++|++||+++. .....+.++.
T Consensus 118 --------~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~---~~~~~~~~h~--------------- 169 (344)
T 4gqb_B 118 --------VSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQ---VVLSSYRAHA--------------- 169 (344)
T ss_dssp --------EEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTT---EEEEEECCCS---------------
T ss_pred --------EeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCC---cEEEEEcCcC---------------
Confidence 11123458999999999999998 9999999999999998653 3333333321
Q ss_pred cccCCCCCCceeEEEcCCCC-eEEEecCCCeEEEEecCCCcEEEEee--cCCcceEEEEEcCC-CcEEEEecCCCeEEEE
Q 023643 153 WGALSPVPENNAIAVDPQGG-AIFSAAGDSCAYCWDVESSRIKMVFK--GHSDYLHCIVARNS-TNQIVTGSEDGTARIW 228 (279)
Q Consensus 153 ~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vw 228 (279)
..|++++|+|++. +|++++.|+.|++||++++++...+. .+...+.+++|+|+ +++|++|+.||+|++|
T Consensus 170 -------~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~w 242 (344)
T 4gqb_B 170 -------AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLV 242 (344)
T ss_dssp -------SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred -------CceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEE
Confidence 2479999999885 67899999999999999999888775 35567999999995 6789999999999999
Q ss_pred eCCCCceEEEecCCccccccCcceeeeEEEEcCCC-CEEEEEcCcceEEeCC
Q 023643 229 DCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASE-SWLVRVRATNYVILFS 279 (279)
Q Consensus 229 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd 279 (279)
|+++++++..+ .+|...|++++|+|++ ++|++|+.|++|++||
T Consensus 243 d~~~~~~~~~~--------~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd 286 (344)
T 4gqb_B 243 DTKSTSCVLSS--------AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLD 286 (344)
T ss_dssp ESCC--CCEEE--------ECCSSCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred ECCCCcEEEEE--------cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEE
Confidence 99999999988 7899999999999998 5799999999999997
No 18
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.9e-39 Score=253.35 Aligned_cols=227 Identities=16% Similarity=0.250 Sum_probs=189.7
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||+|++||..... ....+..|...|.+++|+| ++.+|++|+.|+.+++|++........ .
T Consensus 84 ~Dg~v~vWd~~~~~--~~~~~~~~~~~v~~~~~sp----~g~~lasg~~d~~i~v~~~~~~~~~~~-------------~ 144 (354)
T 2pbi_B 84 QDGKVIVWDSFTTN--KEHAVTMPCTWVMACAYAP----SGCAIACGGLDNKCSVYPLTFDKNENM-------------A 144 (354)
T ss_dssp TTSEEEEEETTTCC--EEEEEECSSSCCCEEEECT----TSSEEEEESTTSEEEEEECCCCTTCCS-------------G
T ss_pred CCCeEEEEECCCCC--cceEEecCCCCEEEEEECC----CCCEEEEeeCCCCEEEEEEeccccccc-------------c
Confidence 48999999977653 3556777889999999999 999999999999999999875321110 2
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
.....+.+|.+.|.+++|+|++. .|++++.|++|++||+++. .....+.++. .
T Consensus 145 ~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~---~~~~~~~~h~----------------------~ 197 (354)
T 2pbi_B 145 AKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESG---QLLQSFHGHG----------------------A 197 (354)
T ss_dssp GGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTC---CEEEEEECCS----------------------S
T ss_pred ccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCC---eEEEEEcCCC----------------------C
Confidence 33455678999999999999998 9999999999999998653 2233333221 1
Q ss_pred CceeEEEcC--CCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE
Q 023643 161 ENNAIAVDP--QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV 238 (279)
Q Consensus 161 ~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 238 (279)
.|.+++|+| ++++|++|+.|+.|++||+++++++..+.+|...|.+++|+|++++|++++.|++|++||++.++.+..
T Consensus 198 ~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~ 277 (354)
T 2pbi_B 198 DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI 277 (354)
T ss_dssp CEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 378889987 467999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+.. ..+...+.+++|+|++++|++|+.|+.|++||
T Consensus 278 ~~~------~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd 312 (354)
T 2pbi_B 278 YSK------ESIIFGASSVDFSLSGRLLFAGYNDYTINVWD 312 (354)
T ss_dssp ECC------TTCCSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EcC------CCcccceeEEEEeCCCCEEEEEECCCcEEEEE
Confidence 642 23445789999999999999999999999996
No 19
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=7.4e-40 Score=259.96 Aligned_cols=227 Identities=11% Similarity=0.209 Sum_probs=186.5
Q ss_pred CCCceeeecccccc-----ccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccc
Q 023643 1 MCGDSTNWDEDAYR-----KSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQ 75 (279)
Q Consensus 1 ~dG~v~iw~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 75 (279)
.||.+++|++.... ......+.+|.+.|.++.|+|. ++.+|++|+.|++|++||+.++
T Consensus 128 ~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~---~~~~l~s~s~D~~i~~wd~~~~-------------- 190 (380)
T 3iz6_a 128 LDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPD---QETRLITGSGDQTCVLWDVTTG-------------- 190 (380)
T ss_dssp SSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSS---SSSCEEEECTTSCEEEECTTTC--------------
T ss_pred CCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecC---CCCEEEEECCCCcEEEEEcCCC--------------
Confidence 48999999976432 2345567899999999999993 4678999999999999999984
Q ss_pred eeeeccccccc-----cCCccCeEEEEecC-CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCC
Q 023643 76 QLLGIEPDGFL-----HGHDGPAYDVKFYG-GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQH 149 (279)
Q Consensus 76 ~~~~~~~~~~~-----~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (279)
+.+..+ .+|...|.+++|+| ++. +|++|+.|++|++||++... .....+.++
T Consensus 191 -----~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~sgs~D~~v~~wd~~~~~--~~~~~~~~h------------- 248 (380)
T 3iz6_a 191 -----QRISIFGSEFPSGHTADVLSLSINSLNAN--MFISGSCDTTVRLWDLRITS--RAVRTYHGH------------- 248 (380)
T ss_dssp -----CEEEEECCCSSSSCCSCEEEEEECSSSCC--EEEEEETTSCEEEEETTTTC--CCCEEECCC-------------
T ss_pred -----cEEEEeecccCCCCccCeEEEEeecCCCC--EEEEEECCCeEEEEECCCCC--cceEEECCc-------------
Confidence 222222 57999999999987 555 99999999999999986321 122222221
Q ss_pred CCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCC-------cceEEEEEcCCCcEEEEecCC
Q 023643 150 KGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHS-------DYLHCIVARNSTNQIVTGSED 222 (279)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------~~i~~i~~~~~~~~l~~~~~d 222 (279)
...|++++|+|++.+|++|+.|++|++||+++++.+..+..+. ..|++++|+|++++|++|+.|
T Consensus 249 ---------~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d 319 (380)
T 3iz6_a 249 ---------EGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN 319 (380)
T ss_dssp ---------SSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT
T ss_pred ---------CCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECC
Confidence 1248999999999999999999999999999999988876543 248999999999999999999
Q ss_pred CeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 223 GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 223 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
|.|++||+.+++.+..+.... .+|...|++++|+|++.+|++|+.|++|++|+
T Consensus 320 g~i~vwd~~~~~~~~~~~~~~----~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 320 GDCYVWDTLLAEMVLNLGTLQ----NSHEGRISCLGLSSDGSALCTGSWDKNLKIWA 372 (380)
T ss_dssp SCEEEEETTTCCEEEEECCSC----SSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred CCEEEEECCCCceEEEEeccc----CCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence 999999999998887764322 57889999999999999999999999999996
No 20
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.6e-39 Score=272.76 Aligned_cols=228 Identities=18% Similarity=0.265 Sum_probs=190.0
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCC----CcEEEEeCCCCCcccccccCCcccce
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSD----GSITSYSIPSCISKLPLGLSNSKVQQ 76 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~ 76 (279)
.||+|+|||+..........+.+|.++|.+++|+| ++++|++++.+ +.|++||..
T Consensus 79 ~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~----dg~~l~~~~~~~~~~~~v~~wd~~----------------- 137 (611)
T 1nr0_A 79 VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS----ESKRIAAVGEGRERFGHVFLFDTG----------------- 137 (611)
T ss_dssp TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT----TSCEEEEEECCSSCSEEEEETTTC-----------------
T ss_pred CCCCEEEeECCCCcceeeEeecccCCceEEEEECC----CCCEEEEEECCCCceeEEEEeeCC-----------------
Confidence 48999999987554444567888999999999999 89999988765 478888843
Q ss_pred eeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643 77 LLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL 156 (279)
Q Consensus 77 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (279)
+....+.+|.+.|.+++|+|++. ..|++++.|++|++||.+.. +....+.++.
T Consensus 138 ----~~~~~l~gh~~~v~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~---~~~~~l~~H~------------------- 190 (611)
T 1nr0_A 138 ----TSNGNLTGQARAMNSVDFKPSRP-FRIISGSDDNTVAIFEGPPF---KFKSTFGEHT------------------- 190 (611)
T ss_dssp ----CBCBCCCCCSSCEEEEEECSSSS-CEEEEEETTSCEEEEETTTB---EEEEEECCCS-------------------
T ss_pred ----CCcceecCCCCCceEEEECCCCC-eEEEEEeCCCeEEEEECCCC---eEeeeecccc-------------------
Confidence 34567789999999999999986 36999999999999996532 2222333221
Q ss_pred CCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee-------cCCcceEEEEEcCCCcEEEEecCCCeEEEEe
Q 023643 157 SPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK-------GHSDYLHCIVARNSTNQIVTGSEDGTARIWD 229 (279)
Q Consensus 157 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd 229 (279)
..|.+++|+|++++|++++.|+.|++||+.+++.+..+. +|.+.|.+++|+|++++|++++.|++|++||
T Consensus 191 ---~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd 267 (611)
T 1nr0_A 191 ---KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 267 (611)
T ss_dssp ---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ---CceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 237999999999999999999999999999999988884 7999999999999999999999999999999
Q ss_pred CCCCceEEEecCCc-----------------------------------cccccCcceeeeEEEEcCCCCEEEEEcCcce
Q 023643 230 CKSGKCIKVIDPVK-----------------------------------DKQLKGVISCVSCITLDASESWLVRVRATNY 274 (279)
Q Consensus 230 ~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 274 (279)
+++++++..+.... ...+.+|...|++++|+|++++|++++.|+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~ 347 (611)
T 1nr0_A 268 VATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGH 347 (611)
T ss_dssp TTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCc
Confidence 99988877664221 1123578999999999999999999999999
Q ss_pred EEeCC
Q 023643 275 VILFS 279 (279)
Q Consensus 275 i~~wd 279 (279)
|++||
T Consensus 348 v~~Wd 352 (611)
T 1nr0_A 348 INSWD 352 (611)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 21
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.7e-39 Score=271.22 Aligned_cols=214 Identities=20% Similarity=0.347 Sum_probs=188.3
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.|++||..+ ..+..+..|...|.+++|+| ++++|++++.|+.|++||.. +
T Consensus 364 ~dg~v~~~~~~~---~~~~~~~~~~~~v~~~~~s~----dg~~l~~~~~d~~v~~~~~~--------------------~ 416 (577)
T 2ymu_A 364 DDKTVKLWNRNG---QLLQTLTGHSSSVRGVAFSP----DGQTIASASDDKTVKLWNRN--------------------G 416 (577)
T ss_dssp TTSEEEEEETTC---CEEEEEECCSSCEEEEEECT----TSSCEEEEETTSEEEEECTT--------------------C
T ss_pred CCCEEEEEcCCC---CEEEEecCCCCCeEEEEECC----CCCEEEEEeCCCEEEEEeCC--------------------C
Confidence 378999999765 45677888999999999999 99999999999999999965 4
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
+.+..+.+|..+|.+++|+|+++ +|++++.|+.|++||... .....+.++. .
T Consensus 417 ~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~v~~w~~~~----~~~~~~~~~~----------------------~ 468 (577)
T 2ymu_A 417 QLLQTLTGHSSSVWGVAFSPDDQ--TIASASDDKTVKLWNRNG----QLLQTLTGHS----------------------S 468 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTS----CEEEEEECCS----------------------S
T ss_pred CEEEEecCCCCCeEEEEECCCCC--EEEEEcCCCEEEEEECCC----CEEEEEcCCC----------------------C
Confidence 55667888999999999999998 999999999999999632 2222222211 2
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
.|++++|+|++++|++++.|+.|++||. +++++..+.+|...|++++|+|++++|++++.||.|++||. +++++..+
T Consensus 469 ~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~- 545 (577)
T 2ymu_A 469 SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL- 545 (577)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE-
T ss_pred CEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEE-
Confidence 3789999999999999999999999995 68899999999999999999999999999999999999995 68888887
Q ss_pred CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+|...|++++|+||+++|++++.|++|++||
T Consensus 546 -------~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 546 -------TGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp -------ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -------cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 78999999999999999999999999999998
No 22
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.5e-39 Score=257.21 Aligned_cols=225 Identities=14% Similarity=0.222 Sum_probs=184.6
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.|++||+++. ..+..+.+|...|.+++|+| ++.+|++++.|++|++||+.+ +
T Consensus 143 ~d~~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~p----~~~~l~s~s~d~~v~iwd~~~-------------------~ 197 (393)
T 1erj_A 143 EDRLIRIWDIENR--KIVMILQGHEQDIYSLDYFP----SGDKLVSGSGDRTVRIWDLRT-------------------G 197 (393)
T ss_dssp TTSCEEEEETTTT--EEEEEECCCSSCEEEEEECT----TSSEEEEEETTSEEEEEETTT-------------------T
T ss_pred CCCeEEEEECCCC--cEEEEEccCCCCEEEEEEcC----CCCEEEEecCCCcEEEEECCC-------------------C
Confidence 4899999998876 34677889999999999999 899999999999999999987 3
Q ss_pred cccccccCCccCeEEEEecC-CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYG-GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV 159 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (279)
+....+. +...+.+++|+| ++. +|++++.|+.|++||+++.. ....+..... ....+.
T Consensus 198 ~~~~~~~-~~~~v~~~~~~~~~~~--~l~~~s~d~~v~iwd~~~~~---~~~~~~~~~~---------------~~~~h~ 256 (393)
T 1erj_A 198 QCSLTLS-IEDGVTTVAVSPGDGK--YIAAGSLDRAVRVWDSETGF---LVERLDSENE---------------SGTGHK 256 (393)
T ss_dssp EEEEEEE-CSSCEEEEEECSTTCC--EEEEEETTSCEEEEETTTCC---EEEEEC---------------------CCCS
T ss_pred eeEEEEE-cCCCcEEEEEECCCCC--EEEEEcCCCcEEEEECCCCc---EEEeeccccc---------------CCCCCC
Confidence 3334443 556799999999 676 99999999999999986532 1111110000 001122
Q ss_pred CCceeEEEcCCCCeEEEecCCCeEEEEecCCC------------cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEE
Q 023643 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESS------------RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARI 227 (279)
Q Consensus 160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~v 227 (279)
..|.+++|+|++++|++++.|+.|++||+++. .+...+.+|...|.+++|+|++.+|++|+.|+.|++
T Consensus 257 ~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~i 336 (393)
T 1erj_A 257 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 336 (393)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 35899999999999999999999999999753 345677889999999999999999999999999999
Q ss_pred EeCCCCceEEEecCCccccccCcceeeeEEEEcC------CCCEEEEEcCcceEEeCC
Q 023643 228 WDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDA------SESWLVRVRATNYVILFS 279 (279)
Q Consensus 228 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~~~~~d~~i~~wd 279 (279)
||+++++++..+ .+|...|.+++|++ ++.+|++|+.||+|++|+
T Consensus 337 wd~~~~~~~~~l--------~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 337 WDKKSGNPLLML--------QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp EETTTCCEEEEE--------ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred EECCCCeEEEEE--------CCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECc
Confidence 999999999888 78889999999886 688999999999999996
No 23
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2e-39 Score=254.29 Aligned_cols=211 Identities=18% Similarity=0.290 Sum_probs=175.6
Q ss_pred cceeeeeeccc-ceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeE
Q 023643 16 SILKEREILTR-TVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAY 94 (279)
Q Consensus 16 ~~~~~~~~~~~-~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 94 (279)
.++..+.+|.. .|++++|+| ++++||+|+.|++|+||++.+... ........+|...|.
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp----~g~~las~~~D~~i~iw~~~~~~~----------------~~~~~~~~~h~~~v~ 65 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNP----AGTLLASCGGDRRIRIWGTEGDSW----------------ICKSVLSEGHQRTVR 65 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECT----TSSCEEEEETTSCEEEEEEETTEE----------------EEEEEECSSCSSCEE
T ss_pred EEeeeecCCCCCcEEEEEECC----CCCEEEEEcCCCeEEEEEcCCCcc----------------eeeeeeccccCCcEE
Confidence 45677888987 999999999 999999999999999999986310 001122367999999
Q ss_pred EEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeE
Q 023643 95 DVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAI 174 (279)
Q Consensus 95 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 174 (279)
+++|+|+++ +|++++.|+++++|+++... ......+.++ ...|.+++|+|++++|
T Consensus 66 ~~~~sp~g~--~l~s~s~D~~v~iw~~~~~~-~~~~~~~~~h----------------------~~~v~~v~~sp~~~~l 120 (345)
T 3fm0_A 66 KVAWSPCGN--YLASASFDATTCIWKKNQDD-FECVTTLEGH----------------------ENEVKSVAWAPSGNLL 120 (345)
T ss_dssp EEEECTTSS--EEEEEETTSCEEEEEECCC--EEEEEEECCC----------------------SSCEEEEEECTTSSEE
T ss_pred EEEECCCCC--EEEEEECCCcEEEEEccCCC-eEEEEEccCC----------------------CCCceEEEEeCCCCEE
Confidence 999999998 99999999999999976421 1112222221 1247999999999999
Q ss_pred EEecCCCeEEEEecCCC---cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE--EEecCCccccccC
Q 023643 175 FSAAGDSCAYCWDVESS---RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI--KVIDPVKDKQLKG 249 (279)
Q Consensus 175 ~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~ 249 (279)
++++.|+.|++||++++ +.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++.. ..+ .+
T Consensus 121 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~--------~~ 192 (345)
T 3fm0_A 121 ATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATL--------EG 192 (345)
T ss_dssp EEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEE--------CC
T ss_pred EEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEe--------cC
Confidence 99999999999999876 346678889999999999999999999999999999999887543 455 68
Q ss_pred cceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 250 VISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 250 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
|...|.+++|+|++++|++|+.|++|++||
T Consensus 193 h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 193 HESTVWSLAFDPSGQRLASCSDDRTVRIWR 222 (345)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCCceEEEEECCCCCEEEEEeCCCeEEEec
Confidence 999999999999999999999999999995
No 24
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.1e-39 Score=257.44 Aligned_cols=225 Identities=15% Similarity=0.256 Sum_probs=178.7
Q ss_pred CCceeeeccccccccceeeeeec------------------ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCc
Q 023643 2 CGDSTNWDEDAYRKSILKEREIL------------------TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCIS 63 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 63 (279)
|+.+++|++..... +..+..| ...|.+++|+| ++++|++|+.|++|++||+.+
T Consensus 84 ~~~v~i~~~~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~----dg~~l~s~~~d~~i~iwd~~~--- 154 (393)
T 1erj_A 84 NKTTQVYRVSDGSL--VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP----DGKFLATGAEDRLIRIWDIEN--- 154 (393)
T ss_dssp BSCEEEEETTTCCE--EEEECC-----------------CCCCBEEEEEECT----TSSEEEEEETTSCEEEEETTT---
T ss_pred CCcEEEEEecCCCE--EEEecCccccccccccccccccCCCceeEEEEEECC----CCCEEEEEcCCCeEEEEECCC---
Confidence 67899999876542 3333322 22499999999 999999999999999999998
Q ss_pred ccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEE
Q 023643 64 KLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLD 143 (279)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 143 (279)
.+.+..+.+|...|.+++|+|++. +|++++.|++|++||+++.. ....+...
T Consensus 155 ----------------~~~~~~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~---~~~~~~~~------- 206 (393)
T 1erj_A 155 ----------------RKIVMILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQ---CSLTLSIE------- 206 (393)
T ss_dssp ----------------TEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTE---EEEEEECS-------
T ss_pred ----------------CcEEEEEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCe---eEEEEEcC-------
Confidence 566778889999999999999998 99999999999999987532 11111110
Q ss_pred eecCCCCCccccCCCCCCceeEEEcC-CCCeEEEecCCCeEEEEecCCCcEEEEe-------ecCCcceEEEEEcCCCcE
Q 023643 144 LVNHQHKGPWGALSPVPENNAIAVDP-QGGAIFSAAGDSCAYCWDVESSRIKMVF-------KGHSDYLHCIVARNSTNQ 215 (279)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~-------~~~~~~i~~i~~~~~~~~ 215 (279)
..+.+++|+| ++.+|++++.|+.|++||+++++.+..+ .+|...|.+++|+|++++
T Consensus 207 ----------------~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~ 270 (393)
T 1erj_A 207 ----------------DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS 270 (393)
T ss_dssp ----------------SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE
T ss_pred ----------------CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCE
Confidence 1368999999 8899999999999999999999888776 578999999999999999
Q ss_pred EEEecCCCeEEEEeCCCCceEEEecC----CccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 216 IVTGSEDGTARIWDCKSGKCIKVIDP----VKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 216 l~~~~~d~~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
|++|+.|+.|++||+++......... .....+.+|...|.+++|+|++.+|++|+.|+.|++||
T Consensus 271 l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd 338 (393)
T 1erj_A 271 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 338 (393)
T ss_dssp EEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEE
T ss_pred EEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 99999999999999986433211110 00112368889999999999999999999999999996
No 25
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.9e-39 Score=252.45 Aligned_cols=220 Identities=16% Similarity=0.166 Sum_probs=178.5
Q ss_pred CCCceeeecccccc-----ccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccc
Q 023643 1 MCGDSTNWDEDAYR-----KSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQ 75 (279)
Q Consensus 1 ~dG~v~iw~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 75 (279)
.||+|++||+.... ......+.+|...|.+++|+| ++.+|++|+.|++|++||+.+
T Consensus 47 ~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~----~~~~l~s~s~D~~v~lwd~~~--------------- 107 (343)
T 2xzm_R 47 RDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ----ENCFAISSSWDKTLRLWDLRT--------------- 107 (343)
T ss_dssp TTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS----STTEEEEEETTSEEEEEETTS---------------
T ss_pred CCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC----CCCEEEEEcCCCcEEEEECCC---------------
Confidence 48999999976432 123557789999999999999 899999999999999999998
Q ss_pred eeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcccc
Q 023643 76 QLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGA 155 (279)
Q Consensus 76 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (279)
++.+..+.+|..+|.+++|+|++. +|++++.|++|++||+... ....... .
T Consensus 108 ----~~~~~~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~~----~~~~~~~-------------------~ 158 (343)
T 2xzm_R 108 ----GTTYKRFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILGE----CKFSSAE-------------------K 158 (343)
T ss_dssp ----SCEEEEEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSSC----EEEECCT-------------------T
T ss_pred ----CcEEEEEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccCC----ceeeeec-------------------c
Confidence 566778889999999999999998 9999999999999998521 1111110 0
Q ss_pred CCCCCCceeEEEcCCC----------CeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeE
Q 023643 156 LSPVPENNAIAVDPQG----------GAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTA 225 (279)
Q Consensus 156 ~~~~~~i~~~~~~~~~----------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i 225 (279)
..+...|.+++|+|++ .++++++.|+.|++|| ...+....+.+|...|.+++|+|++++|++|+.||.|
T Consensus 159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v 237 (343)
T 2xzm_R 159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKL 237 (343)
T ss_dssp TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred cCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeE
Confidence 0112247899999876 6899999999999999 4567788899999999999999999999999999999
Q ss_pred EEEeCCC-CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 226 RIWDCKS-GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 226 ~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
++||++. ......+ .+...|.+++|+|++.+++++ .|+.|++||
T Consensus 238 ~iwd~~~~~~~~~~~---------~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~ 282 (343)
T 2xzm_R 238 LIWDILNLTYPQREF---------DAGSTINQIAFNPKLQWVAVG-TDQGVKIFN 282 (343)
T ss_dssp EEEESSCCSSCSEEE---------ECSSCEEEEEECSSSCEEEEE-ESSCEEEEE
T ss_pred EEEECCCCcccceee---------cCCCcEEEEEECCCCCEEEEE-CCCCEEEEE
Confidence 9999954 3343333 233469999999999887755 577899995
No 26
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-40 Score=267.53 Aligned_cols=236 Identities=9% Similarity=0.031 Sum_probs=184.5
Q ss_pred CCCceeeeccccccccc--eeeeeecccceEEEEECCCCC--CCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccce
Q 023643 1 MCGDSTNWDEDAYRKSI--LKEREILTRTVFRTVWGPSKD--GSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQ 76 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 76 (279)
.||+|+||++++..... ...+..|.+.|.+++|+|... +++.+||+++.||+|++||+..........
T Consensus 181 ~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~-------- 252 (524)
T 2j04_B 181 HSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF-------- 252 (524)
T ss_dssp -CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE--------
T ss_pred CCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc--------
Confidence 47899999987754221 234567789999999999311 125799999999999999998643210000
Q ss_pred eeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643 77 LLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL 156 (279)
Q Consensus 77 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (279)
....++...+.+|...|.+++|+|++ .|++|+.||+|++||+++... ....+.++ .
T Consensus 253 ~~~~~p~~~l~~h~~~v~sv~~s~~~---~lasgs~DgtV~lWD~~~~~~--~~~~~~~H-~------------------ 308 (524)
T 2j04_B 253 KMCEKPSLTLSLADSLITTFDFLSPT---TVVCGFKNGFVAEFDLTDPEV--PSFYDQVH-D------------------ 308 (524)
T ss_dssp ECCCSCSEEECCTTTCEEEEEESSSS---EEEEEETTSEEEEEETTBCSS--CSEEEECS-S------------------
T ss_pred eeecCceEEEEcCCCCEEEEEecCCC---eEEEEeCCCEEEEEECCCCCC--ceEEeecc-c------------------
Confidence 00023445678899999999999863 899999999999999875311 11112221 1
Q ss_pred CCCCCceeE--EEcCCC-CeEEEecCCCeEEEEecCCCcEEEEeecCCc--ceEEEEEcCCCcEEEEecCCCeEEEEeCC
Q 023643 157 SPVPENNAI--AVDPQG-GAIFSAAGDSCAYCWDVESSRIKMVFKGHSD--YLHCIVARNSTNQIVTGSEDGTARIWDCK 231 (279)
Q Consensus 157 ~~~~~i~~~--~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~d~~i~vwd~~ 231 (279)
..|+++ +|+|++ .+|++++.|++|++||+++++++..+.+|.. .|.+++|+|+++.+++++.|++|++||++
T Consensus 309 ---~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~ 385 (524)
T 2j04_B 309 ---SYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSR 385 (524)
T ss_dssp ---SCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETT
T ss_pred ---ccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECc
Confidence 237888 578887 8999999999999999999887777776653 58899999999999999999999999999
Q ss_pred CCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 232 SGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+++++..+ .+|...|++++|+|++++|++|+.||+|++||
T Consensus 386 ~~~~~~~l--------~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 386 AAFAVHPL--------VSRETTITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp CTTCCEEE--------EECSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred ccccceee--------ecCCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 99888877 68999999999999999999999999999996
No 27
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.2e-39 Score=270.96 Aligned_cols=225 Identities=12% Similarity=0.148 Sum_probs=187.4
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
++.|++|+++.. .....+.+|...|++++|+| ++++||+|+.||+|+|||+.+.. ..
T Consensus 38 ~~~v~l~~~~~~--~~~~~~~~h~~~v~~~~~sp----dg~~lasg~~d~~v~lWd~~~~~-----------------~~ 94 (611)
T 1nr0_A 38 GTSVYTVPVGSL--TDTEIYTEHSHQTTVAKTSP----SGYYCASGDVHGNVRIWDTTQTT-----------------HI 94 (611)
T ss_dssp TTEEEEEETTCS--SCCEEECCCSSCEEEEEECT----TSSEEEEEETTSEEEEEESSSTT-----------------CC
T ss_pred CCEEEEecCCCc--ccCeEecCCCCceEEEEECC----CCcEEEEEeCCCCEEEeECCCCc-----------------ce
Confidence 457999998765 34667889999999999999 99999999999999999997531 22
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCC----CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDD----GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS 157 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (279)
....+.+|.++|.+++|+|+++ +|++++.+ +.|++||... ....+.++
T Consensus 95 ~~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd~~~-----~~~~l~gh--------------------- 146 (611)
T 1nr0_A 95 LKTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGT-----SNGNLTGQ--------------------- 146 (611)
T ss_dssp EEEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCC-----BCBCCCCC---------------------
T ss_pred eeEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEeeCCC-----CcceecCC---------------------
Confidence 2346778999999999999998 88888765 4788888432 11122221
Q ss_pred CCCCceeEEEcCCCC-eEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE
Q 023643 158 PVPENNAIAVDPQGG-AIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI 236 (279)
Q Consensus 158 ~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~ 236 (279)
...|++++|+|++. .|++++.|++|++||..+++.+..+.+|...|.+++|+|++++|++++.|++|++||+.+++.+
T Consensus 147 -~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 147 -ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 225 (611)
T ss_dssp -SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred -CCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEe
Confidence 12479999999987 5999999999999999999999999999999999999999999999999999999999999988
Q ss_pred EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
..+.... ....+|...|.+++|+|++++|++++.|++|++||
T Consensus 226 ~~~~~~~-~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd 267 (611)
T 1nr0_A 226 GVFEDDS-LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 267 (611)
T ss_dssp EECBCTT-SSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeecccc-ccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 8773110 00127899999999999999999999999999996
No 28
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.8e-38 Score=255.22 Aligned_cols=243 Identities=15% Similarity=0.193 Sum_probs=190.6
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccc------
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKV------ 74 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~------ 74 (279)
+|++|+|||.++++...+..+..|...|++++|+| ++++||+|+.||+|+|||+.++.....+.......
T Consensus 123 ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fsp----dg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~ 198 (420)
T 4gga_A 123 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK----EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN 198 (420)
T ss_dssp ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT----TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE
T ss_pred eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECC----CCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC
Confidence 38999999999876544445567888999999999 99999999999999999998875443222111110
Q ss_pred ------------ceeee----ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcc
Q 023643 75 ------------QQLLG----IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHV 138 (279)
Q Consensus 75 ------------~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 138 (279)
...+. ...+..+.+|...+..+.|+|++. ++++++.|+.+++|+................+
T Consensus 199 ~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~--~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~- 275 (420)
T 4gga_A 199 SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR--HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH- 275 (420)
T ss_dssp TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEESSCCSSCSCCSEEECCC-
T ss_pred CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC--eeeeeeccccceEEeeccccccceeeeeeccc-
Confidence 00000 233456678999999999999998 99999999999999987543322211111111
Q ss_pred cceEEeecCCCCCccccCCCCCCceeEEEcCCCC-eEEE--ecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcE
Q 023643 139 KPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG-AIFS--AAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ 215 (279)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 215 (279)
...|.+++|+|.+. .+++ |+.|+.|++||+.++++...+..| ..+.++.|+|+++.
T Consensus 276 --------------------~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~ 334 (420)
T 4gga_A 276 --------------------QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKE 334 (420)
T ss_dssp --------------------SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTE
T ss_pred --------------------CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCe
Confidence 12478999999766 4444 467999999999999999988754 56889999999988
Q ss_pred EEEec--CCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 216 IVTGS--EDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 216 l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+++++ .|+.|+|||+++++++..+ .+|...|++++|+|+|++|+||+.|++|++||
T Consensus 335 lv~~sg~~d~~I~iwd~~~~~~v~~l--------~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 335 LISGHGFAQNQLVIWKYPTMAKVAEL--------KGHTSRVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp EEEEECTTTCCEEEEETTTCCEEEEE--------CCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEEEEecCCCEEEEEECCCCcEEEEE--------cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 87654 7999999999999999998 78999999999999999999999999999997
No 29
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.3e-38 Score=244.71 Aligned_cols=207 Identities=17% Similarity=0.263 Sum_probs=171.9
Q ss_pred eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643 19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF 98 (279)
Q Consensus 19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 98 (279)
..+.+|...|.+++|+| ++++||+|+.|++|+||++.... .+.+..+.+|.++|.+++|
T Consensus 3 ~~~~~h~~~V~~~~~s~----~g~~las~s~D~~v~iw~~~~~~-----------------~~~~~~l~gH~~~V~~v~~ 61 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDY----YGKRMATCSSDKTIKIFEVEGET-----------------HKLIDTLTGHEGPVWRVDW 61 (297)
T ss_dssp EECCSCSSCEEEEEECT----TSSEEEEEETTSCEEEEEBCSSC-----------------BCCCEEECCCSSCEEEEEE
T ss_pred eeccCCcCceEEEEECC----CCCEEEEEeCCCEEEEEecCCCC-----------------cEEEEEEccccCCeEEEEe
Confidence 35678999999999999 99999999999999999997521 3566788999999999999
Q ss_pred cCC--CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC--CCeE
Q 023643 99 YGG--NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ--GGAI 174 (279)
Q Consensus 99 ~~~--~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l 174 (279)
+|+ +. +|++++.|++|++||+++... .....+.+ +...|.+++|+|+ +.+|
T Consensus 62 s~~~~g~--~l~s~s~D~~v~iWd~~~~~~-~~~~~~~~----------------------h~~~v~~v~~~p~~~g~~l 116 (297)
T 2pm7_B 62 AHPKFGT--ILASCSYDGKVMIWKEENGRW-SQIAVHAV----------------------HSASVNSVQWAPHEYGPML 116 (297)
T ss_dssp CCGGGCS--EEEEEETTTEEEEEEBSSSCB-CCCEEECC----------------------CSSCEEEEEECCGGGCSEE
T ss_pred cCCCcCC--EEEEEcCCCEEEEEEcCCCce-EEEEEeec----------------------CCCceeEEEeCcCCCCcEE
Confidence 864 55 999999999999999864311 11111111 1124799999997 7899
Q ss_pred EEecCCCeEEEEecCCCc--EEEEeecCCcceEEEEEcCC-------------CcEEEEecCCCeEEEEeCCCCc----e
Q 023643 175 FSAAGDSCAYCWDVESSR--IKMVFKGHSDYLHCIVARNS-------------TNQIVTGSEDGTARIWDCKSGK----C 235 (279)
Q Consensus 175 ~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~-------------~~~l~~~~~d~~i~vwd~~~~~----~ 235 (279)
++++.|+.|++||++++. ....+.+|...|.+++|+|+ +++|++|+.|++|++||+++++ .
T Consensus 117 ~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~ 196 (297)
T 2pm7_B 117 LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL 196 (297)
T ss_dssp EEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEE
T ss_pred EEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEE
Confidence 999999999999998763 24567889999999999996 5799999999999999998776 4
Q ss_pred EEEecCCccccccCcceeeeEEEEcCCC---CEEEEEcCcceEEeCC
Q 023643 236 IKVIDPVKDKQLKGVISCVSCITLDASE---SWLVRVRATNYVILFS 279 (279)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~~wd 279 (279)
...+ .+|...|.+++|+|++ .+|++++.|++|++||
T Consensus 197 ~~~l--------~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 197 ESTL--------EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp EEEE--------CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred EEEe--------cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence 4455 7899999999999984 8999999999999996
No 30
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.5e-38 Score=244.80 Aligned_cols=207 Identities=23% Similarity=0.316 Sum_probs=182.6
Q ss_pred cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEE
Q 023643 16 SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYD 95 (279)
Q Consensus 16 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 95 (279)
.....+.+|...|++++|+| ++++|++++.||.|++|++.+ ++....+.+|...|.+
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~----~~~~l~s~~~dg~i~iw~~~~-------------------~~~~~~~~~h~~~v~~ 70 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSP----NGEWLASSSADKLIKIWGAYD-------------------GKFEKTISGHKLGISD 70 (312)
T ss_dssp EEEEEECCCSSCEEEEEECT----TSSEEEEEETTSCEEEEETTT-------------------CCEEEEECCCSSCEEE
T ss_pred eeEEEEcccCCcEEEEEECC----CCCEEEEeeCCCeEEEEeCCC-------------------cccchhhccCCCceEE
Confidence 33557789999999999999 899999999999999999987 5556678889999999
Q ss_pred EEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEE
Q 023643 96 VKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF 175 (279)
Q Consensus 96 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 175 (279)
++|+|+++ +|++++.|+.|++||+++. .....+.++ ...|.+++|+|++++|+
T Consensus 71 ~~~~~~~~--~l~s~~~d~~i~vwd~~~~---~~~~~~~~~----------------------~~~v~~~~~~~~~~~l~ 123 (312)
T 4ery_A 71 VAWSSDSN--LLVSASDDKTLKIWDVSSG---KCLKTLKGH----------------------SNYVFCCNFNPQSNLIV 123 (312)
T ss_dssp EEECTTSS--EEEEEETTSEEEEEETTTC---CEEEEEECC----------------------SSCEEEEEECSSSSEEE
T ss_pred EEEcCCCC--EEEEECCCCEEEEEECCCC---cEEEEEcCC----------------------CCCEEEEEEcCCCCEEE
Confidence 99999998 9999999999999998653 222222221 11378999999999999
Q ss_pred EecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeee
Q 023643 176 SAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVS 255 (279)
Q Consensus 176 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 255 (279)
+++.|+.|++||+++++.+..+..|..+|.+++|+|++++|++++.||.|++||+++++.+..+. ..+...+.
T Consensus 124 s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-------~~~~~~~~ 196 (312)
T 4ery_A 124 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI-------DDDNPPVS 196 (312)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-------CSSCCCEE
T ss_pred EEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEe-------ccCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999888774 35567899
Q ss_pred EEEEcCCCCEEEEEcCcceEEeCC
Q 023643 256 CITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 256 ~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.++|+|++++|++++.|+.|++||
T Consensus 197 ~~~~~~~~~~l~~~~~d~~i~iwd 220 (312)
T 4ery_A 197 FVKFSPNGKYILAATLDNTLKLWD 220 (312)
T ss_dssp EEEECTTSSEEEEEETTTEEEEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEE
Confidence 999999999999999999999996
No 31
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.3e-38 Score=247.01 Aligned_cols=211 Identities=15% Similarity=0.213 Sum_probs=180.3
Q ss_pred cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEE
Q 023643 16 SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYD 95 (279)
Q Consensus 16 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 95 (279)
.+..++.+|.+.|++++|+|. ++++|++|+.|++|++|++...... .+.++..+.+|...|.+
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~---~~~~l~s~s~D~~v~~W~~~~~~~~--------------~~~~~~~~~~h~~~v~~ 70 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAG---QPNLLLSASRDKTLISWKLTGDDQK--------------FGVPVRSFKGHSHIVQD 70 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSS---CTTEEEEEETTSEEEEEEEEEETTE--------------EEEEEEEEECCSSCEEE
T ss_pred EEEEEEccccceEEEEEccCC---CccEEEEecCCccEEEecCCCCCcc--------------ccccceEEeCCcccEEE
Confidence 445678899999999999993 4589999999999999998742110 03456778899999999
Q ss_pred EEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEE
Q 023643 96 VKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF 175 (279)
Q Consensus 96 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 175 (279)
++|+|++. +|++++.|++|++||+++. .....+.++. ..|.+++|+|++.+|+
T Consensus 71 ~~~s~dg~--~l~s~s~D~~v~~wd~~~~---~~~~~~~~h~----------------------~~v~~~~~~~~~~~l~ 123 (319)
T 3frx_A 71 CTLTADGA--YALSASWDKTLRLWDVATG---ETYQRFVGHK----------------------SDVMSVDIDKKASMII 123 (319)
T ss_dssp EEECTTSS--EEEEEETTSEEEEEETTTT---EEEEEEECCS----------------------SCEEEEEECTTSCEEE
T ss_pred EEECCCCC--EEEEEeCCCEEEEEECCCC---CeeEEEccCC----------------------CcEEEEEEcCCCCEEE
Confidence 99999998 9999999999999998653 2222333221 2379999999999999
Q ss_pred EecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCC------CcEEEEecCCCeEEEEeCCCCceEEEecCCccccccC
Q 023643 176 SAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNS------TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKG 249 (279)
Q Consensus 176 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~------~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 249 (279)
+++.|+.|++||++ ++.+..+.+|...|.+++++|. +..+++++.|+.|++||+++++....+ .+
T Consensus 124 s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--------~~ 194 (319)
T 3frx_A 124 SGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF--------IG 194 (319)
T ss_dssp EEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE--------CC
T ss_pred EEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee--------cC
Confidence 99999999999996 6678888899999999999985 448999999999999999999888887 68
Q ss_pred cceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 250 VISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 250 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
|...|.+++|+|++++|++|+.||.|++||
T Consensus 195 h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd 224 (319)
T 3frx_A 195 HNSNINTLTASPDGTLIASAGKDGEIMLWN 224 (319)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 999999999999999999999999999996
No 32
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.1e-39 Score=256.39 Aligned_cols=246 Identities=16% Similarity=0.257 Sum_probs=188.4
Q ss_pred eeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccccc
Q 023643 6 TNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGF 85 (279)
Q Consensus 6 ~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (279)
..|+.... .+...+.+|.+.|++++|+| ++++|++|+.||+|+|||+.+ ++....
T Consensus 49 ~~~~~~~~--~~~~~l~gH~~~V~~~~~sp----~~~~l~s~s~D~~v~iWd~~~-------------------~~~~~~ 103 (380)
T 3iz6_a 49 VSFNPTDL--VCCRTLQGHSGKVYSLDWTP----EKNWIVSASQDGRLIVWNALT-------------------SQKTHA 103 (380)
T ss_dssp CCCCCCCC--EEEEEECCCSSCEEEEEECT----TSSCEEEEETTSEEEEEETTT-------------------TEEEEE
T ss_pred ccccccee--EEeecccccccEEEEEEEcC----CCCEEEEEeCCCeEEEEECCC-------------------CccceE
Confidence 34554433 44678899999999999999 899999999999999999988 566677
Q ss_pred ccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccC----cceeeeccC-----------------------cc
Q 023643 86 LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTES----KVPINLQGN-----------------------HV 138 (279)
Q Consensus 86 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~----~~~~~~~~~-----------------------~~ 138 (279)
+..|...|.+++|+|+++ +|++++.|+.+++|++...... .....+.++ ..
T Consensus 104 ~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~ 181 (380)
T 3iz6_a 104 IKLHCPWVMECAFAPNGQ--SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT 181 (380)
T ss_dssp EECCCTTCCCCEECTTSS--EEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSC
T ss_pred EecCCCCEEEEEECCCCC--EEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCc
Confidence 888999999999999998 9999999999999998642110 011111111 01
Q ss_pred cceEEeecCCCCCcc---ccCCCCCCceeEEEcC-CCCeEEEecCCCeEEEEecC-CCcEEEEeecCCcceEEEEEcCCC
Q 023643 139 KPVLDLVNHQHKGPW---GALSPVPENNAIAVDP-QGGAIFSAAGDSCAYCWDVE-SSRIKMVFKGHSDYLHCIVARNST 213 (279)
Q Consensus 139 ~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~i~~i~~~~~~ 213 (279)
..++++........+ ....+...|.+++|++ ++.+|++|+.|+.|++||++ .++.+..+.+|...|.+++|+|++
T Consensus 182 i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~ 261 (380)
T 3iz6_a 182 CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG 261 (380)
T ss_dssp EEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS
T ss_pred EEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC
Confidence 111111111000000 0023456789999987 78899999999999999998 457888999999999999999999
Q ss_pred cEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 214 NQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 214 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
++|++|+.||+|++||+++++.+..+..+.. ....+...|++++|+|+|++|++|+.||.|++||
T Consensus 262 ~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd 326 (380)
T 3iz6_a 262 QRFGTGSDDGTCRLFDMRTGHQLQVYNREPD-RNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD 326 (380)
T ss_dssp SEEEEECSSSCEEEEETTTTEEEEEECCCCS-SSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEE
T ss_pred CeEEEEcCCCeEEEEECCCCcEEEEeccccc-ccccccCceEEEEECCCCCEEEEEECCCCEEEEE
Confidence 9999999999999999999999888754321 0012334589999999999999999999999996
No 33
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4.5e-38 Score=243.74 Aligned_cols=243 Identities=14% Similarity=0.174 Sum_probs=188.9
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccc------
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKV------ 74 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~------ 74 (279)
+|++|+|||+++++.........|...|++++|+| ++++||+|+.||+|++|++.+++....+.......
T Consensus 43 ~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~----~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~ 118 (318)
T 4ggc_A 43 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK----EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN 118 (318)
T ss_dssp ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT----TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE
T ss_pred eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECC----CCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecC
Confidence 48999999998875433334567888999999999 99999999999999999999876544322111110
Q ss_pred ------------ceeee----ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcc
Q 023643 75 ------------QQLLG----IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHV 138 (279)
Q Consensus 75 ------------~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 138 (279)
..... ...+..+.+|...+..+.+.+++. +|++++.|+.|++||+++.............+
T Consensus 119 ~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~- 195 (318)
T 4ggc_A 119 SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR--HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH- 195 (318)
T ss_dssp TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEESSCBTTBSCCSEEECCC-
T ss_pred CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC--EEEEEecCcceeEEECCCCcccccceeeeccc-
Confidence 00000 233456678999999999999998 99999999999999987643322222111111
Q ss_pred cceEEeecCCCCCccccCCCCCCceeEEEcCCCCeE---EEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcE
Q 023643 139 KPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAI---FSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ 215 (279)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l---~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 215 (279)
...|.++.++|++..+ ++++.++.|++||.+......... +...+..+.|+|+++.
T Consensus 196 --------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 254 (318)
T 4ggc_A 196 --------------------QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKE 254 (318)
T ss_dssp --------------------CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTE
T ss_pred --------------------CCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccc
Confidence 1236888999877643 467788999999999887776655 6778999999999888
Q ss_pred EEEe--cCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 216 IVTG--SEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 216 l~~~--~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
++++ +.|+.|++||+++++++..+ .+|...|++++|+|++++|++|+.||+|++||
T Consensus 255 ~~~~sg~~d~~i~iwd~~~~~~~~~l--------~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 255 LISGHGFAQNQLVIWKYPTMAKVAEL--------KGHTSRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp EEEEECTTTCCEEEEETTTCCEEEEE--------CCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred eEEEEEcCCCEEEEEECCCCcEEEEE--------cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 7664 48999999999999999998 78999999999999999999999999999997
No 34
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.4e-38 Score=246.23 Aligned_cols=220 Identities=21% Similarity=0.296 Sum_probs=187.9
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.|++||++.. ..+..+..|...|.+++|+| ++++|++|+.||.|++||+.+ +
T Consensus 85 ~d~~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~----~~~~l~s~~~d~~i~iwd~~~-------------------~ 139 (312)
T 4ery_A 85 DDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNP----QSNLIVSGSFDESVRIWDVKT-------------------G 139 (312)
T ss_dssp TTSEEEEEETTTC--CEEEEEECCSSCEEEEEECS----SSSEEEEEETTSCEEEEETTT-------------------C
T ss_pred CCCEEEEEECCCC--cEEEEEcCCCCCEEEEEEcC----CCCEEEEEeCCCcEEEEECCC-------------------C
Confidence 4899999998876 34677889999999999999 899999999999999999987 5
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
+.+..+..|..+|.+++|+|++. +|++++.||.|++||+++.. ....+...+. .
T Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~wd~~~~~---~~~~~~~~~~---------------------~ 193 (312)
T 4ery_A 140 KCLKTLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQ---CLKTLIDDDN---------------------P 193 (312)
T ss_dssp CEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTCC---EEEEECCSSC---------------------C
T ss_pred EEEEEecCCCCcEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCc---eeeEEeccCC---------------------C
Confidence 66677888999999999999998 99999999999999986532 1222211111 1
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEE--EEEc-CCCcEEEEecCCCeEEEEeCCCCceEE
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHC--IVAR-NSTNQIVTGSEDGTARIWDCKSGKCIK 237 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~--i~~~-~~~~~l~~~~~d~~i~vwd~~~~~~~~ 237 (279)
.+.+++|+|++++|++++.|+.|++||+++++.+..+.+|.....+ ..++ +++.+|++|+.||.|++||+++++.+.
T Consensus 194 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~ 273 (312)
T 4ery_A 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 273 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhh
Confidence 3688999999999999999999999999999999999888765433 2333 578999999999999999999999998
Q ss_pred EecCCccccccCcceeeeEEEEcCCCCEEEEEc--CcceEEeCC
Q 023643 238 VIDPVKDKQLKGVISCVSCITLDASESWLVRVR--ATNYVILFS 279 (279)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~wd 279 (279)
.+ .+|...|.+++|+|++++|++++ .|+.|++|+
T Consensus 274 ~~--------~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 274 KL--------QGHTDVVISTACHPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp EE--------CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred hh--------hccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence 88 68889999999999999999986 699999995
No 35
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-39 Score=258.33 Aligned_cols=226 Identities=12% Similarity=0.067 Sum_probs=180.7
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.|++||+++.....+..+.+|...|.+++|+| ++++|++++.||+|++||+.+... .
T Consensus 31 ~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~----~~~~l~s~s~d~~v~vwd~~~~~~----------------~ 90 (377)
T 3dwl_C 31 ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP----KSNRIVTCSQDRNAYVYEKRPDGT----------------W 90 (377)
T ss_dssp SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT----TTCCEEEEETTSSEEEC------C----------------C
T ss_pred CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeC----CCCEEEEEeCCCeEEEEEcCCCCc----------------e
Confidence 48999999998764445777889999999999999 899999999999999999987320 1
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
.+...+.+|...|.+++|+|+++ +|++++.|+.|++||++..........+...+ ..
T Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h---------------------~~ 147 (377)
T 3dwl_C 91 KQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPL---------------------RS 147 (377)
T ss_dssp CCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSC---------------------CS
T ss_pred eeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeeccc---------------------CC
Confidence 24556678999999999999998 99999999999999987543222223332211 12
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecC------------------CCcEEEEeecCCcceEEEEEcCCCcEEEEecCC
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVE------------------SSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED 222 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~------------------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 222 (279)
.|.+++|+|++++|++++.|+.|++||++ .++++..+ +|...|.+++|+|++++|++++.|
T Consensus 148 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d 226 (377)
T 3dwl_C 148 TILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHD 226 (377)
T ss_dssp CEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETT
T ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCC
Confidence 47999999999999999999999999985 35566777 899999999999999999999999
Q ss_pred CeEEEEeCCCCce----EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 223 GTARIWDCKSGKC----IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 223 ~~i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
|.|++||+++++. +..+ .+|...|.+++|+|++++|++|+.++.+.+|
T Consensus 227 ~~i~iwd~~~~~~~~~~~~~~--------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 278 (377)
T 3dwl_C 227 SSVTIAYPSAPEQPPRALITV--------KLSQLPLRSLLWANESAIVAAGYNYSPILLQ 278 (377)
T ss_dssp TEEC-CEECSTTSCEEECCCE--------ECSSSCEEEEEEEETTEEEEEESSSSEEEEC
T ss_pred CcEEEEECCCCCCcceeeEee--------cCCCCceEEEEEcCCCCEEEEEcCCcEEEEE
Confidence 9999999999887 5555 6888899999999999999999888777544
No 36
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-38 Score=246.36 Aligned_cols=209 Identities=17% Similarity=0.255 Sum_probs=170.6
Q ss_pred cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccc-cC-CccCe
Q 023643 16 SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFL-HG-HDGPA 93 (279)
Q Consensus 16 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~v 93 (279)
..+..+.+|.++|++++|+| + +||+|+.|++|++|++.... ......+ .+ |.++|
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~----~--~las~~~D~~i~lw~~~~~~-----------------~~~~~~~~~~~h~~~v 61 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQ----G--ILATGSTDRKIKLVSVKYDD-----------------FTLIDVLDETAHKKAI 61 (330)
T ss_dssp EEEEEEECCSSCEEEEEEET----T--EEEEEESSSCEEEEECSSSC-----------------CEEEEEECTTCCCSCE
T ss_pred ccceeeccCCCceeeeccCC----C--EEEEEcCCCEEEEEEecCCC-----------------eEEEEEEecCCccCCE
Confidence 34677889999999999999 5 99999999999999998631 1222333 34 99999
Q ss_pred EEEEecCCCCceEEEEeeCCCcEEEeecCCCcc----CcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC
Q 023643 94 YDVKFYGGNEDALLLSCGDDGRICGWRWKEFTE----SKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP 169 (279)
Q Consensus 94 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 169 (279)
.+++|+|+++ +|++++.|++|++|+++.... ......+.+ +...|.+++|+|
T Consensus 62 ~~v~~sp~~~--~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~----------------------h~~~V~~v~~sp 117 (330)
T 2hes_X 62 RSVAWRPHTS--LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG----------------------HENEVKGVAWSN 117 (330)
T ss_dssp EEEEECTTSS--EEEEEETTSCEEEEEC-------CCCEEEEEEC--------------------------CEEEEEECT
T ss_pred EEEEECCCCC--EEEEEeCCCcEEEEEcccCcCccccceeEEEEcC----------------------CCCcEEEEEECC
Confidence 9999999998 999999999999999853211 011111111 222489999999
Q ss_pred CCCeEEEecCCCeEEEEecCC----CcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC--ceEEEecCCc
Q 023643 170 QGGAIFSAAGDSCAYCWDVES----SRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG--KCIKVIDPVK 243 (279)
Q Consensus 170 ~~~~l~~~~~d~~i~i~d~~~----~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~--~~~~~~~~~~ 243 (279)
++++|++++.|+.|++||++. .+++..+.+|...|.+++|+|++.+|++++.|++|++||.+++ +++..+
T Consensus 118 ~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~---- 193 (330)
T 2hes_X 118 DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVL---- 193 (330)
T ss_dssp TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE----
T ss_pred CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEc----
Confidence 999999999999999999943 2567788999999999999999999999999999999998876 566666
Q ss_pred cccccCcceeeeEEEEcCC--CCEEEEEcCcceEEeCC
Q 023643 244 DKQLKGVISCVSCITLDAS--ESWLVRVRATNYVILFS 279 (279)
Q Consensus 244 ~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~wd 279 (279)
.+|...|.+++|+|+ +.+|++|+.|++|++||
T Consensus 194 ----~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~ 227 (330)
T 2hes_X 194 ----NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227 (330)
T ss_dssp ----CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEE
T ss_pred ----cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEE
Confidence 789999999999998 77899999999999996
No 37
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.1e-37 Score=243.72 Aligned_cols=255 Identities=18% Similarity=0.206 Sum_probs=186.4
Q ss_pred eeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccccc
Q 023643 6 TNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGF 85 (279)
Q Consensus 6 ~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (279)
.++.....+..+..++++|.+.|++++|+|. ++++||+|+.||+|+|||+.+..... ..+...
T Consensus 19 ~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~---~~~~l~S~s~D~~i~vWd~~~~~~~~--------------~~~~~~ 81 (340)
T 4aow_A 19 YFQSMMTEQMTLRGTLKGHNGWVTQIATTPQ---FPDMILSASRDKTIIMWKLTRDETNY--------------GIPQRA 81 (340)
T ss_dssp -------CEEEEEEEECCCSSCEEEEEECTT---CTTEEEEEETTSCEEEEEECCSSSCS--------------EEEEEE
T ss_pred EEEEccCCceEEEEEECCccCCEEEEEEeCC---CCCEEEEEcCCCeEEEEECCCCCccc--------------ceeeEE
Confidence 3344444444455678999999999999993 47899999999999999998643211 334567
Q ss_pred ccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeecc--------CcccceEEeecCCC--------
Q 023643 86 LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQG--------NHVKPVLDLVNHQH-------- 149 (279)
Q Consensus 86 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-------- 149 (279)
+.+|...|.+++|+|+++ +|++++.|+.|++|+............... .....+........
T Consensus 82 l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~ 159 (340)
T 4aow_A 82 LRGHSHFVSDVVISSDGQ--FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG 159 (340)
T ss_dssp ECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS
T ss_pred EeCCCCCEEEEEECCCCC--EEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCC
Confidence 889999999999999998 999999999999999865322111100000 00000100000000
Q ss_pred --CCccccCCCCCCceeEEEcCCC--CeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeE
Q 023643 150 --KGPWGALSPVPENNAIAVDPQG--GAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTA 225 (279)
Q Consensus 150 --~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i 225 (279)
........+...+.+++|++++ .++++++.|+.|++||+++++.+..+.+|...|++++|+|++++|++|+.||.|
T Consensus 160 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i 239 (340)
T 4aow_A 160 VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQA 239 (340)
T ss_dssp CEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred CceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeE
Confidence 0011123345678899998865 467889999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCceEEEecCCcc-----------------------------------------ccccCcceeeeEEEEcCCCC
Q 023643 226 RIWDCKSGKCIKVIDPVKD-----------------------------------------KQLKGVISCVSCITLDASES 264 (279)
Q Consensus 226 ~vwd~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~v~~~~~~~~~~ 264 (279)
++||+++.+.+..+..+.. ....+|...|++++|+|+++
T Consensus 240 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 319 (340)
T 4aow_A 240 MLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ 319 (340)
T ss_dssp EEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS
T ss_pred EEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC
Confidence 9999998877766543321 01235778899999999999
Q ss_pred EEEEEcCcceEEeCC
Q 023643 265 WLVRVRATNYVILFS 279 (279)
Q Consensus 265 ~l~~~~~d~~i~~wd 279 (279)
+|++|+.||.|++||
T Consensus 320 ~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 320 TLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EEEEEETTSCEEEEE
T ss_pred EEEEEeCCCEEEEEe
Confidence 999999999999996
No 38
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.9e-38 Score=248.51 Aligned_cols=221 Identities=8% Similarity=0.017 Sum_probs=171.6
Q ss_pred CCceeeecccccccc--cee-----eeeecccceEEEEECCCCCCCCCEEEE--ecCCCcEEEEeCCCCCcccccccCCc
Q 023643 2 CGDSTNWDEDAYRKS--ILK-----EREILTRTVFRTVWGPSKDGSPDTIVI--ASSDGSITSYSIPSCISKLPLGLSNS 72 (279)
Q Consensus 2 dG~v~iw~~~~~~~~--~~~-----~~~~~~~~v~~~~~~~~~~~~~~~l~~--~~~dg~i~iw~~~~~~~~~~~~~~~~ 72 (279)
|+.+|+|+++..... ... ....+...+.+++|+| ||+++|+ ++.|++|+|||+.+
T Consensus 103 d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp----Dg~~la~as~~~d~~i~iwd~~~------------ 166 (365)
T 4h5i_A 103 NKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR----EGTVAAIASSKVPAIMRIIDPSD------------ 166 (365)
T ss_dssp CCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT----TSSCEEEEESCSSCEEEEEETTT------------
T ss_pred CCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC----CCCEEEEEECCCCCEEEEeECCC------------
Confidence 678999987654311 111 1123345688999999 9998765 45789999999998
Q ss_pred ccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCc
Q 023643 73 KVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGP 152 (279)
Q Consensus 73 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (279)
++++..+. |.+.|.+++|+|+++ +|++++.+ .+++|+..+.. .........+.
T Consensus 167 -------~~~~~~~~-~~~~V~~v~fspdg~--~l~s~s~~-~~~~~~~~~~~--~~~~~~~~~~~-------------- 219 (365)
T 4h5i_A 167 -------LTEKFEIE-TRGEVKDLHFSTDGK--VVAYITGS-SLEVISTVTGS--CIARKTDFDKN-------------- 219 (365)
T ss_dssp -------TEEEEEEE-CSSCCCEEEECTTSS--EEEEECSS-CEEEEETTTCC--EEEEECCCCTT--------------
T ss_pred -------CcEEEEeC-CCCceEEEEEccCCc--eEEeccce-eEEEEEeccCc--ceeeeecCCCC--------------
Confidence 45555554 778899999999998 99998855 45666644321 11111111111
Q ss_pred cccCCCCCCceeEEEcCCCCeEEEecCCC----eEEEEecCCCcE----EEEeecCCcceEEEEEcCCCcEEEEecCCCe
Q 023643 153 WGALSPVPENNAIAVDPQGGAIFSAAGDS----CAYCWDVESSRI----KMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224 (279)
Q Consensus 153 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~----~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~ 224 (279)
..|.+++|+|++..+++++.|+ .+++||+..... ...+.+|...|++++|+|+|++|++|+.|++
T Consensus 220 -------~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~ 292 (365)
T 4h5i_A 220 -------WSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNS 292 (365)
T ss_dssp -------EEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSC
T ss_pred -------CCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCE
Confidence 1378999999999999998876 688999876643 3467789999999999999999999999999
Q ss_pred EEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 225 ARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 225 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
|+|||+++++++..+. .+|...|++++|+|||++||+||.|++|+|||
T Consensus 293 V~iwd~~~~~~~~~~~-------~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ 340 (365)
T 4h5i_A 293 IALVKLKDLSMSKIFK-------QAHSFAITEVTISPDSTYVASVSAANTIHIIK 340 (365)
T ss_dssp EEEEETTTTEEEEEET-------TSSSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred EEEEECCCCcEEEEec-------CcccCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 9999999999998863 68999999999999999999999999999996
No 39
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-37 Score=247.04 Aligned_cols=227 Identities=16% Similarity=0.226 Sum_probs=187.2
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCC--CCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGS--PDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL 78 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 78 (279)
.||.|++||++......+..+..|...|++++|+| + +++|++++.||.|++||+.+..
T Consensus 31 ~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~~~dg~v~iwd~~~~~---------------- 90 (379)
T 3jrp_A 31 SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH----PKFGTILASCSYDGKVLIWKEENGR---------------- 90 (379)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC----GGGCSEEEEEETTSCEEEEEEETTE----------------
T ss_pred CCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC----CCCCCEEEEeccCCEEEEEEcCCCc----------------
Confidence 48999999998555466778889999999999997 5 8999999999999999998731
Q ss_pred eccccccccCCccCeEEEEecCC--CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643 79 GIEPDGFLHGHDGPAYDVKFYGG--NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL 156 (279)
Q Consensus 79 ~~~~~~~~~~h~~~v~~~~~~~~--~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (279)
...+..+..|...|.+++|+|+ +. +|++++.|+.|++||++..... ....+..
T Consensus 91 -~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~-~~~~~~~--------------------- 145 (379)
T 3jrp_A 91 -WSQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTT-SPIIIDA--------------------- 145 (379)
T ss_dssp -EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCC-CEEEEEC---------------------
T ss_pred -eeEeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCce-eeEEecC---------------------
Confidence 1255677789999999999999 77 9999999999999998754221 1111111
Q ss_pred CCCCCceeEEEcC-------------CCCeEEEecCCCeEEEEecCCCc----EEEEeecCCcceEEEEEcCC---CcEE
Q 023643 157 SPVPENNAIAVDP-------------QGGAIFSAAGDSCAYCWDVESSR----IKMVFKGHSDYLHCIVARNS---TNQI 216 (279)
Q Consensus 157 ~~~~~i~~~~~~~-------------~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~i~~i~~~~~---~~~l 216 (279)
+...|.+++|+| ++.++++++.|+.|++||+++++ ....+.+|...|.+++|+|+ +++|
T Consensus 146 -~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l 224 (379)
T 3jrp_A 146 -HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL 224 (379)
T ss_dssp -CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred -CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeE
Confidence 112378999999 68999999999999999998764 55677889999999999999 8999
Q ss_pred EEecCCCeEEEEeCCCCce---EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 217 VTGSEDGTARIWDCKSGKC---IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 217 ~~~~~d~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
++++.||.|++||+++++. ...+.. ..|...|++++|+|++++|++++.||.|++|+
T Consensus 225 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 225 ASVSQDRTCIIWTQDNEQGPWKKTLLKE------EKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp EEEETTSCEEEEEESSTTSCCEEEESSS------SCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred EEEeCCCEEEEEeCCCCCccceeeeecc------ccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 9999999999999998642 222211 45788999999999999999999999999996
No 40
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.1e-38 Score=252.63 Aligned_cols=241 Identities=15% Similarity=0.135 Sum_probs=192.2
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.|++||++... ....+..|...|.+++|+| ++++|++|+.||+|++||+.+ +
T Consensus 117 ~dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~----~~~~l~s~s~d~~i~iwd~~~-------------------~ 171 (420)
T 3vl1_A 117 TEGDIKVLDSNFNL--QREIDQAHVSEITKLKFFP----SGEALISSSQDMQLKIWSVKD-------------------G 171 (420)
T ss_dssp TTSCEEEECTTSCE--EEEETTSSSSCEEEEEECT----TSSEEEEEETTSEEEEEETTT-------------------C
T ss_pred CCCCEEEEeCCCcc--eeeecccccCccEEEEECC----CCCEEEEEeCCCeEEEEeCCC-------------------C
Confidence 48999999988763 3556678999999999999 899999999999999999998 5
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeecc--CcccceEEeecCCCCCccccCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQG--NHVKPVLDLVNHQHKGPWGALSP 158 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 158 (279)
+.+..+.+|...|.+++|+|++. +|++++.|+.|++||+++.. ....+.. .+...+..+.............+
T Consensus 172 ~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~v~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 246 (420)
T 3vl1_A 172 SNPRTLIGHRATVTDIAIIDRGR--NVLSASLDGTIRLWECGTGT---TIHTFNRKENPHDGVNSIALFVGTDRQLHEIS 246 (420)
T ss_dssp CCCEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEETTTTE---EEEEECBTTBTTCCEEEEEEEECCCSSCGGGC
T ss_pred cCceEEcCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEeECCCCc---eeEEeecCCCCCCCccEEEEecCCcceeeecc
Confidence 66778889999999999999998 99999999999999987542 2222222 22333333322111111111223
Q ss_pred CCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee-cCCcceEEEEEcCCCc-EEEEecCCCeEEEEeCCCCce-
Q 023643 159 VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK-GHSDYLHCIVARNSTN-QIVTGSEDGTARIWDCKSGKC- 235 (279)
Q Consensus 159 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~- 235 (279)
...+.+++|+|++++|++++.||.|++||+++++.+..+. .|...|.+++|+|++. +|++|+.||.|++||+++++.
T Consensus 247 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~ 326 (420)
T 3vl1_A 247 TSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP 326 (420)
T ss_dssp CCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC
T ss_pred cCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc
Confidence 3457889999999999999999999999999998877765 4788999999999988 999999999999999998754
Q ss_pred EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 236 IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+..+. ..|...|.++.+ +++.+|++++.|+.|++||
T Consensus 327 ~~~~~-------~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 327 VGEFL-------INEGTPINNVYF-AAGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp SEEEE-------ESTTSCEEEEEE-ETTEEEEEETTTEEEEEEE
T ss_pred hhhhh-------ccCCCCceEEEe-CCCCEEEEecCCccEEEEe
Confidence 56663 236677888855 5788999999999999996
No 41
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.9e-38 Score=267.60 Aligned_cols=222 Identities=16% Similarity=0.258 Sum_probs=186.0
Q ss_pred CCCceeeeccccccc---cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccccee
Q 023643 1 MCGDSTNWDEDAYRK---SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQL 77 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 77 (279)
.||+|++|++..... .....+.+|...|.+++|+| ++++|++|+.||+|+|||+.+
T Consensus 403 ~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~----~g~~l~sgs~Dg~v~vwd~~~----------------- 461 (694)
T 3dm0_A 403 RDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS----DGQFALSGSWDGELRLWDLAA----------------- 461 (694)
T ss_dssp TTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT----TSSEEEEEETTSEEEEEETTT-----------------
T ss_pred CCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC----CCCEEEEEeCCCcEEEEECCC-----------------
Confidence 489999999875432 23456789999999999999 999999999999999999998
Q ss_pred eeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643 78 LGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS 157 (279)
Q Consensus 78 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (279)
+.....+.+|...|.+++|+|++. +|++++.|++|++||+... ........ ...
T Consensus 462 --~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~----~~~~~~~~------------------~~~ 515 (694)
T 3dm0_A 462 --GVSTRRFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGE----CKYTISEG------------------GEG 515 (694)
T ss_dssp --TEEEEEEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSC----EEEEECSS------------------TTS
T ss_pred --CcceeEEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCC----cceeeccC------------------CCC
Confidence 566678889999999999999998 9999999999999997431 11111000 011
Q ss_pred CCCCceeEEEcCCC--CeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce
Q 023643 158 PVPENNAIAVDPQG--GAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC 235 (279)
Q Consensus 158 ~~~~i~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~ 235 (279)
+...|.+++|+|++ ..+++++.|+.|++||+++++....+.+|.+.|++++|+|++++|++|+.||.|++||+++++.
T Consensus 516 h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~ 595 (694)
T 3dm0_A 516 HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK 595 (694)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE
T ss_pred CCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Confidence 22248999999986 5799999999999999999999999999999999999999999999999999999999999998
Q ss_pred EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 236 IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+..+. +...|.+++|+|++.+|++++ ++.|++||
T Consensus 596 ~~~~~---------~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd 629 (694)
T 3dm0_A 596 LYSLE---------ANSVIHALCFSPNRYWLCAAT-EHGIKIWD 629 (694)
T ss_dssp EECCB---------CSSCEEEEEECSSSSEEEEEE-TTEEEEEE
T ss_pred EEEec---------CCCcEEEEEEcCCCcEEEEEc-CCCEEEEE
Confidence 87762 335799999999998888775 45699996
No 42
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.1e-37 Score=240.98 Aligned_cols=212 Identities=16% Similarity=0.191 Sum_probs=173.8
Q ss_pred cceeeeeecccceEEEEE-----CCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCc
Q 023643 16 SILKEREILTRTVFRTVW-----GPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHD 90 (279)
Q Consensus 16 ~~~~~~~~~~~~v~~~~~-----~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 90 (279)
.....+.+|...|++++| ++ .++.+|++|+.|++|++||+......... +.+...+.+|.
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~---~d~~~l~sgs~D~~v~iWd~~~~~~~~~~------------~~~~~~l~~h~ 76 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKEN---EDSPVLISGSRDKTVMIWKLYEEEQNGYF------------GIPHKALTGHN 76 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTT---CCCCEEEEEETTSCEEEEEECSSCCSSBS------------EEEEEEECCCS
T ss_pred eeeeeeccchhhhhheeeEEEeecC---CCCCEEEEEcCCCEEEEEECCcCCccccc------------ccccchhccCC
Confidence 345678899999999999 54 27899999999999999999763211100 34456788999
Q ss_pred cCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC
Q 023643 91 GPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ 170 (279)
Q Consensus 91 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 170 (279)
..|.+++|+|++. ++++++.|++|++||+++. .....+.++ ...|.+++|+|+
T Consensus 77 ~~V~~~~~~~~~~--~l~s~s~D~~v~lwd~~~~---~~~~~~~~h----------------------~~~v~~v~~sp~ 129 (343)
T 2xzm_R 77 HFVSDLALSQENC--FAISSSWDKTLRLWDLRTG---TTYKRFVGH----------------------QSEVYSVAFSPD 129 (343)
T ss_dssp SCEEEEEECSSTT--EEEEEETTSEEEEEETTSS---CEEEEEECC----------------------CSCEEEEEECSS
T ss_pred CceEEEEECCCCC--EEEEEcCCCcEEEEECCCC---cEEEEEcCC----------------------CCcEEEEEECCC
Confidence 9999999999998 9999999999999998753 222223222 124799999999
Q ss_pred CCeEEEecCCCeEEEEecCCCcEEEEee---cCCcceEEEEEcCCC----------cEEEEecCCCeEEEEeCCCCceEE
Q 023643 171 GGAIFSAAGDSCAYCWDVESSRIKMVFK---GHSDYLHCIVARNST----------NQIVTGSEDGTARIWDCKSGKCIK 237 (279)
Q Consensus 171 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~i~~i~~~~~~----------~~l~~~~~d~~i~vwd~~~~~~~~ 237 (279)
+++|++++.|+.|++||+.. ....... .|...|.+++|+|++ .+|++++.|+.|++|| ...+...
T Consensus 130 ~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~ 207 (343)
T 2xzm_R 130 NRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRY 207 (343)
T ss_dssp TTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEE
T ss_pred CCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeE
Confidence 99999999999999999984 3433333 688999999999986 7999999999999999 4566666
Q ss_pred EecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 238 VIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+ .+|...|.+++|+|++++|++|+.||.|++||
T Consensus 208 ~~--------~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd 241 (343)
T 2xzm_R 208 TF--------KAHESNVNHLSISPNGKYIATGGKDKKLLIWD 241 (343)
T ss_dssp EE--------ECCSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred EE--------cCccccceEEEECCCCCEEEEEcCCCeEEEEE
Confidence 66 68889999999999999999999999999996
No 43
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.5e-38 Score=256.76 Aligned_cols=211 Identities=13% Similarity=0.133 Sum_probs=171.5
Q ss_pred eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643 18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK 97 (279)
Q Consensus 18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 97 (279)
.....+|...|++|+|+|. ++++||+|+.||+|+|||+.+.. ......+.+|.++|++|+
T Consensus 112 ~~~~~~~~~~V~~l~~~P~---~~~~lasGs~dg~i~lWd~~~~~-----------------~~~~~~~~gH~~~V~~l~ 171 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPT---HPSTVAVGSKGGDIMLWNFGIKD-----------------KPTFIKGIGAGGSITGLK 171 (435)
T ss_dssp CCEEEECSSCEEEEEECSS---CTTCEEEEETTSCEEEECSSCCS-----------------CCEEECCCSSSCCCCEEE
T ss_pred cccCCCCCCCEEEEEEeCC---CCCEEEEEeCCCEEEEEECCCCC-----------------ceeEEEccCCCCCEEEEE
Confidence 3456678899999999994 67899999999999999998742 222345568999999999
Q ss_pred ecC-CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEE
Q 023643 98 FYG-GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFS 176 (279)
Q Consensus 98 ~~~-~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 176 (279)
|+| ++. +|++++.||+|++||++.. ....+...+.. ...+.+++|+|++.+|++
T Consensus 172 f~p~~~~--~l~s~s~D~~v~iwd~~~~----~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~l~~ 226 (435)
T 4e54_B 172 FNPLNTN--QFYASSMEGTTRLQDFKGN----ILRVFASSDTI-------------------NIWFCSLDVSASSRMVVT 226 (435)
T ss_dssp ECSSCTT--EEEEECSSSCEEEEETTSC----EEEEEECCSSC-------------------SCCCCCEEEETTTTEEEE
T ss_pred EeCCCCC--EEEEEeCCCEEEEeeccCC----ceeEEeccCCC-------------------CccEEEEEECCCCCEEEE
Confidence 998 455 9999999999999998632 11111111111 113678999999999999
Q ss_pred ecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCc-EEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeee
Q 023643 177 AAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTN-QIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVS 255 (279)
Q Consensus 177 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 255 (279)
|+.||.|++||++ ++.+..+.+|...|.+++|+|++. +|++++.|+.|++||+++++....+... .+|...|+
T Consensus 227 g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~-----~~h~~~v~ 300 (435)
T 4e54_B 227 GDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS-----LPHRHPVN 300 (435)
T ss_dssp ECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBC-----CBCSSCEE
T ss_pred EeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEe-----eecccccc
Confidence 9999999999986 566778889999999999999865 7889999999999999987655444221 57889999
Q ss_pred EEEEcCCCCEEEEEcCcceEEeCC
Q 023643 256 CITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 256 ~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+++|+|++.+|++++.||.|++||
T Consensus 301 ~~~~spdg~~l~s~~~D~~i~iwd 324 (435)
T 4e54_B 301 AACFSPDGARLLTTDQKSEIRVYS 324 (435)
T ss_dssp ECCBCTTSSEEEEEESSSCEEEEE
T ss_pred ceeECCCCCeeEEEcCCCEEEEEE
Confidence 999999999999999999999996
No 44
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=9.4e-38 Score=247.05 Aligned_cols=226 Identities=10% Similarity=0.102 Sum_probs=190.8
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.|++||+++.....+..+..|...|.+++|+| ++++|++++.||.|++||+.+.. .
T Consensus 28 ~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~~~~~dg~i~vwd~~~~~-----------------~ 86 (372)
T 1k8k_C 28 NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP----DSNRIVTCGTDRNAYVWTLKGRT-----------------W 86 (372)
T ss_dssp SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET----TTTEEEEEETTSCEEEEEEETTE-----------------E
T ss_pred CCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC----CCCEEEEEcCCCeEEEEECCCCe-----------------e
Confidence 37999999998875446778889999999999999 89999999999999999998732 1
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
.....+..|...|.+++|+|+++ +|++++.|+.|++||++..............+ ..
T Consensus 87 ~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~---------------------~~ 143 (372)
T 1k8k_C 87 KPTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPI---------------------RS 143 (372)
T ss_dssp EEEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTC---------------------CS
T ss_pred eeeEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeeccc---------------------CC
Confidence 12233466899999999999998 99999999999999987542211111111111 12
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEec------------------CCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDV------------------ESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED 222 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~------------------~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 222 (279)
.|.+++|+|++++|++++.|+.|++||+ ..++.+..+..|...|.+++|+|++++|++++.|
T Consensus 144 ~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 223 (372)
T 1k8k_C 144 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD 223 (372)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred CeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC
Confidence 4799999999999999999999999995 4678899999999999999999999999999999
Q ss_pred CeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 223 GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 223 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+.|++||+++++++..+ ..|...|.+++|+|++.+|++| .|+.|++|+
T Consensus 224 ~~i~i~d~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~ 271 (372)
T 1k8k_C 224 STVCLADADKKMAVATL--------ASETLPLLAVTFITESSLVAAG-HDCFPVLFT 271 (372)
T ss_dssp TEEEEEEGGGTTEEEEE--------ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEE
T ss_pred CEEEEEECCCCceeEEE--------ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEE
Confidence 99999999999999988 6778899999999999988888 899999996
No 45
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.2e-37 Score=239.53 Aligned_cols=218 Identities=14% Similarity=0.154 Sum_probs=188.4
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.|++||++.........+..|...|.+++|+| ++++|++++.||.|++||+.+ .
T Consensus 117 ~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~dg~v~~~d~~~-------------------~ 173 (337)
T 1gxr_A 117 EASTLSIWDLAAPTPRIKAELTSSAPACYALAISP----DSKVCFSCCSDGNIAVWDLHN-------------------Q 173 (337)
T ss_dssp SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT----TSSEEEEEETTSCEEEEETTT-------------------T
T ss_pred CCCcEEEEECCCCCcceeeecccCCCceEEEEECC----CCCEEEEEeCCCcEEEEeCCC-------------------C
Confidence 37999999998876555677888999999999999 899999999999999999998 5
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
+.+..+..|...|.+++|+|+++ +|++++.||.|++||++... ....... ..
T Consensus 174 ~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~~~d~~~~~---~~~~~~~-----------------------~~ 225 (337)
T 1gxr_A 174 TLVRQFQGHTDGASCIDISNDGT--KLWTGGLDNTVRSWDLREGR---QLQQHDF-----------------------TS 225 (337)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTE---EEEEEEC-----------------------SS
T ss_pred ceeeeeecccCceEEEEECCCCC--EEEEEecCCcEEEEECCCCc---eEeeecC-----------------------CC
Confidence 66677888999999999999998 99999999999999987532 1111110 11
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
.+.+++|+|+++++++++.++.|++||+++++.. .+..|...|.+++|+|++++|++++.||.|++||+++++.+...
T Consensus 226 ~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~- 303 (337)
T 1gxr_A 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS- 303 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-
Confidence 3789999999999999999999999999987754 56779999999999999999999999999999999999887554
Q ss_pred CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.|...|.+++|+|++++|++++.||.|++|+
T Consensus 304 --------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 304 --------KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp --------ECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred --------cCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 5677899999999999999999999999996
No 46
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.4e-37 Score=241.39 Aligned_cols=245 Identities=14% Similarity=0.109 Sum_probs=190.0
Q ss_pred CCCceeeeccccccc--cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643 1 MCGDSTNWDEDAYRK--SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL 78 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 78 (279)
.||.|++||++.... .....+..|...|.+++|+|. .++++|++++.||.|++||+.+........
T Consensus 31 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~---------- 98 (351)
T 3f3f_A 31 SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP--EYGRIIASASYDKTVKLWEEDPDQEECSGR---------- 98 (351)
T ss_dssp TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCG--GGCSEEEEEETTSCEEEEEECTTSCTTSSC----------
T ss_pred CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCC--CCCCEEEEEcCCCeEEEEecCCCccccccc----------
Confidence 489999999875432 346677889999999999991 028999999999999999998743211000
Q ss_pred eccccccccCCccCeEEEEecCC--CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643 79 GIEPDGFLHGHDGPAYDVKFYGG--NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL 156 (279)
Q Consensus 79 ~~~~~~~~~~h~~~v~~~~~~~~--~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (279)
..+++..+..|...|.+++|+|+ +. +|++++.||.|++||+++............ . ........
T Consensus 99 ~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----~-------~~~~~~~~ 164 (351)
T 3f3f_A 99 RWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLRSWTLTSE-----M-------KVLSIPPA 164 (351)
T ss_dssp SEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTTCCEEEEE-----E-------ESCSCCCS
T ss_pred CcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhcccccccc-----c-------cccccccC
Confidence 01445677789999999999999 77 999999999999999876533221111000 0 00011111
Q ss_pred CCCCCceeEEEcCC---CCeEEEecCCCeEEEEecCCCcE--EEEeecCCcceEEEEEcCCC----cEEEEecCCCeEEE
Q 023643 157 SPVPENNAIAVDPQ---GGAIFSAAGDSCAYCWDVESSRI--KMVFKGHSDYLHCIVARNST----NQIVTGSEDGTARI 227 (279)
Q Consensus 157 ~~~~~i~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~i~~i~~~~~~----~~l~~~~~d~~i~v 227 (279)
.+...+.+++|+|+ +..+++++.++.+.+|+...++. +..+.+|...|++++|+|++ ++|++++.||.|++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 23345899999997 88999999999998888887765 67788899999999999998 89999999999999
Q ss_pred EeCCCC----------------------------------------------ceEEEecCCccccccCcceeeeEEEEcC
Q 023643 228 WDCKSG----------------------------------------------KCIKVIDPVKDKQLKGVISCVSCITLDA 261 (279)
Q Consensus 228 wd~~~~----------------------------------------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 261 (279)
||++.+ +.+..+ .+|...|++++|+|
T Consensus 245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~h~~~v~~~~~s~ 316 (351)
T 3f3f_A 245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH--------DDHNGEVWSVSWNL 316 (351)
T ss_dssp EEEEECC---------------------------------------CCSEEEEEEEEE--------CTTSSCEEEEEECS
T ss_pred EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE--------ecccccEEEEEEcC
Confidence 999875 333333 67889999999999
Q ss_pred CCCEEEEEcCcceEEeCC
Q 023643 262 SESWLVRVRATNYVILFS 279 (279)
Q Consensus 262 ~~~~l~~~~~d~~i~~wd 279 (279)
++++|++|+.||.|++||
T Consensus 317 ~~~~l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 317 TGTILSSAGDDGKVRLWK 334 (351)
T ss_dssp SSCCEEEEETTSCEEEEE
T ss_pred CCCEEEEecCCCcEEEEe
Confidence 999999999999999996
No 47
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.8e-37 Score=257.09 Aligned_cols=214 Identities=19% Similarity=0.320 Sum_probs=186.9
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.|++||.++. .+..+..|...|.+++|+| ++++|++++.||.|++|+.. +
T Consensus 323 ~d~~i~~w~~~~~---~~~~~~~~~~~v~~~~~s~----~g~~l~~~~~dg~v~~~~~~--------------------~ 375 (577)
T 2ymu_A 323 DDKTVKLWNRNGQ---HLQTLTGHSSSVWGVAFSP----DGQTIASASDDKTVKLWNRN--------------------G 375 (577)
T ss_dssp TTSCEEEEETTSC---EEEEECCCSSCEEEEEECT----TSSEEEEEETTSEEEEEETT--------------------C
T ss_pred CCCeEEEEeCCCC---eeEEEeCCCCCEEEEEECC----CCCEEEEEeCCCEEEEEcCC--------------------C
Confidence 3799999998763 3566778999999999999 99999999999999999965 4
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
+.+..+.+|..+|.+++|+|+++ +|++++.|+.|++||... +....+.++ ..
T Consensus 376 ~~~~~~~~~~~~v~~~~~s~dg~--~l~~~~~d~~v~~~~~~~----~~~~~~~~~----------------------~~ 427 (577)
T 2ymu_A 376 QLLQTLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRNG----QLLQTLTGH----------------------SS 427 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSS--CEEEEETTSEEEEECTTC----CEEEEEECC----------------------SS
T ss_pred CEEEEecCCCCCeEEEEECCCCC--EEEEEeCCCEEEEEeCCC----CEEEEecCC----------------------CC
Confidence 55667788999999999999998 999999999999999531 222222221 12
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
.|++++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+.|++||. +++++..+
T Consensus 428 ~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~- 504 (577)
T 2ymu_A 428 SVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL- 504 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE-
T ss_pred CeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE-
Confidence 3789999999999999999999999996 57888899999999999999999999999999999999994 68888888
Q ss_pred CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+|...|++++|+|++++|++++.||.|++||
T Consensus 505 -------~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 505 -------TGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp -------ECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred -------eCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence 68889999999999999999999999999997
No 48
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.7e-37 Score=244.23 Aligned_cols=223 Identities=14% Similarity=0.177 Sum_probs=172.8
Q ss_pred CCceeeeccccccc--cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643 2 CGDSTNWDEDAYRK--SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG 79 (279)
Q Consensus 2 dG~v~iw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 79 (279)
||.|++|+...... ........|...|.+++|+| ++. +++++.||+|+|||+.++....
T Consensus 69 d~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~----d~~-~l~~s~dg~v~lWd~~~~~~~~-------------- 129 (357)
T 4g56_B 69 GGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVS----EKG-ILVASDSGAVELWEILEKESLL-------------- 129 (357)
T ss_dssp CEEEEEESSCC---CGGGCSEEEECSSCEEEEEEET----TTE-EEEEETTSCEEEC--------C--------------
T ss_pred cCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcC----CCC-EEEEECCCEEEEeeccccceeE--------------
Confidence 67888888654431 23345567889999999999 665 5567889999999998743211
Q ss_pred ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643 80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV 159 (279)
Q Consensus 80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (279)
.......+|.+.|.+++|+|+++ +|++++.|+.|++||+++. .....+.++.
T Consensus 130 -~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~---~~~~~~~~h~---------------------- 181 (357)
T 4g56_B 130 -VNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQK---AVLKSYNAHS---------------------- 181 (357)
T ss_dssp -CCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTT---EEEEEECCCS----------------------
T ss_pred -EEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCC---cEEEEEcCCC----------------------
Confidence 11123347999999999999998 9999999999999998643 2233333221
Q ss_pred CCceeEEEcCCCC-eEEEecCCCeEEEEecCCCcEEEEee--cCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCce
Q 023643 160 PENNAIAVDPQGG-AIFSAAGDSCAYCWDVESSRIKMVFK--GHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKC 235 (279)
Q Consensus 160 ~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~ 235 (279)
..|++++|+|++. ++++++.|+.|++||+++++++..+. .+...+.+++|+|+ +.+|++|+.|+.|++||++++++
T Consensus 182 ~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~ 261 (357)
T 4g56_B 182 SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS 261 (357)
T ss_dssp SCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG
T ss_pred CCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE
Confidence 2379999999875 78899999999999999988776554 46778999999997 57899999999999999999999
Q ss_pred EEEecCCccccccCcceeeeEEEEcCCC-CEEEEEcCcceEEeCC
Q 023643 236 IKVIDPVKDKQLKGVISCVSCITLDASE-SWLVRVRATNYVILFS 279 (279)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd 279 (279)
+..+ .+|...|++++|+|++ ++|++|+.|++|++||
T Consensus 262 ~~~~--------~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd 298 (357)
T 4g56_B 262 AQTS--------AVHSQNITGLAYSYHSSPFLASISEDCTVAVLD 298 (357)
T ss_dssp CEEE--------CCCSSCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred eEEE--------eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEE
Confidence 9888 6888899999999987 6799999999999997
No 49
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.5e-37 Score=246.78 Aligned_cols=257 Identities=15% Similarity=0.107 Sum_probs=194.8
Q ss_pred CCCceeeecccccc----ccceeeeeecccceEEEEECCCCCCC----C---CEEEEecCCCcEEEEeCCCCCccccccc
Q 023643 1 MCGDSTNWDEDAYR----KSILKEREILTRTVFRTVWGPSKDGS----P---DTIVIASSDGSITSYSIPSCISKLPLGL 69 (279)
Q Consensus 1 ~dG~v~iw~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~----~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 69 (279)
.||.|++|+++... ...+..+..|...|.+++|+| + + .+|++++.||.|++|++.+.....
T Consensus 34 ~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~---- 105 (397)
T 1sq9_A 34 GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ----AIERDAFELCLVATTSFSGDLLFYRITREDETK---- 105 (397)
T ss_dssp TTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEE----EEETTTEEEEEEEEEETTSCEEEEEEEECTTTC----
T ss_pred CCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEec----ccccCCccccEEEEEcCCCCEEEEEccCCcccc----
Confidence 48999999988765 335777889999999999999 8 8 999999999999999998732100
Q ss_pred CCcccceeeeccccccccCC-----ccCeEEEEec----CCCCceE-EEEeeCCCcEEEeecCC------CccCcce--e
Q 023643 70 SNSKVQQLLGIEPDGFLHGH-----DGPAYDVKFY----GGNEDAL-LLSCGDDGRICGWRWKE------FTESKVP--I 131 (279)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~----~~~~~~~-l~s~~~dg~i~iw~~~~------~~~~~~~--~ 131 (279)
......+..| ...|.+++|+ |++. + |++++.||.|++||++. ....... .
T Consensus 106 ----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 173 (397)
T 1sq9_A 106 ----------KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTL 173 (397)
T ss_dssp ----------CEEEEEECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEE
T ss_pred ----------cccceeecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCCCcEEEEeCCccccccccceeeccCcc
Confidence 0015566677 5899999999 9888 8 99999999999999976 3222200 0
Q ss_pred eec------cCcccceEEee-------------------cCCCCCccc-cCC---C---CCCceeEEEcCCCCeEEEecC
Q 023643 132 NLQ------GNHVKPVLDLV-------------------NHQHKGPWG-ALS---P---VPENNAIAVDPQGGAIFSAAG 179 (279)
Q Consensus 132 ~~~------~~~~~~~~~~~-------------------~~~~~~~~~-~~~---~---~~~i~~~~~~~~~~~l~~~~~ 179 (279)
.+. ..+...+..+. ......... ... + ...|.+++|+|++.+|++++.
T Consensus 174 ~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~ 253 (397)
T 1sq9_A 174 ELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD 253 (397)
T ss_dssp EEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEE
T ss_pred eeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEec
Confidence 110 00111111110 000011111 122 4 678999999999999999999
Q ss_pred C---CeEEEEecCCCcEEEEeec-------------CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCc
Q 023643 180 D---SCAYCWDVESSRIKMVFKG-------------HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVK 243 (279)
Q Consensus 180 d---~~i~i~d~~~~~~~~~~~~-------------~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 243 (279)
| +.|++||+++++.+..+.. |...|.+++|+|++++|++++.||.|++||+++++.+..+....
T Consensus 254 d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 333 (397)
T 1sq9_A 254 SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC 333 (397)
T ss_dssp ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCG
T ss_pred CCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEeccc
Confidence 9 9999999999999999998 99999999999999999999999999999999999999885110
Q ss_pred cccccCc---------------ceeeeEEEEcCCC----------CEEEEEcCcceEEeCC
Q 023643 244 DKQLKGV---------------ISCVSCITLDASE----------SWLVRVRATNYVILFS 279 (279)
Q Consensus 244 ~~~~~~~---------------~~~v~~~~~~~~~----------~~l~~~~~d~~i~~wd 279 (279)
.. .+| ...|.+++|+|++ ++|++++.||.|++||
T Consensus 334 ~~--~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 334 DD--IEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp GG--CSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred Cc--ccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 00 044 8899999999998 7999999999999996
No 50
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-38 Score=257.89 Aligned_cols=231 Identities=11% Similarity=0.066 Sum_probs=178.6
Q ss_pred CCCceeeecccccccc---------ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCC
Q 023643 1 MCGDSTNWDEDAYRKS---------ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSN 71 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 71 (279)
.||+|++||++..... ....+.+|...|++++|+| + ..|++|+.||+|++||+++.
T Consensus 233 ~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~----~-~~lasgs~DgtV~lWD~~~~---------- 297 (524)
T 2j04_B 233 QEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS----P-TTVVCGFKNGFVAEFDLTDP---------- 297 (524)
T ss_dssp TTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS----S-SEEEEEETTSEEEEEETTBC----------
T ss_pred cCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC----C-CeEEEEeCCCEEEEEECCCC----------
Confidence 4899999998764311 1236778999999999998 4 48999999999999999863
Q ss_pred cccceeeeccccccccCCccCeEEE--EecCCC-CceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCC
Q 023643 72 SKVQQLLGIEPDGFLHGHDGPAYDV--KFYGGN-EDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQ 148 (279)
Q Consensus 72 ~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (279)
..+...+.+|.++|.++ .|+|++ . +|+|++.|++|+|||+++... ...+.++...
T Consensus 298 --------~~~~~~~~~H~~~V~sv~~~~s~~g~~--~laS~S~D~tvklWD~~~~~~---~~~~~~~~~~--------- 355 (524)
T 2j04_B 298 --------EVPSFYDQVHDSYILSVSTAYSDFEDT--VVSTVAVDGYFYIFNPKDIAT---TKTTVSRFRG--------- 355 (524)
T ss_dssp --------SSCSEEEECSSSCEEEEEEECCTTSCC--EEEEEETTSEEEEECGGGHHH---HCEEEEECSC---------
T ss_pred --------CCceEEeecccccEEEEEEEcCCCCCe--EEEEeccCCeEEEEECCCCCc---cccccccccc---------
Confidence 23445678899999999 577876 6 999999999999999875322 1111111100
Q ss_pred CCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEE
Q 023643 149 HKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIW 228 (279)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vw 228 (279)
..|.+++|+|+++.+++++.|++|++||++++.++..+.+|.+.|++++|+|++++|++|+.||+|++|
T Consensus 356 -----------~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lw 424 (524)
T 2j04_B 356 -----------SNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIIT 424 (524)
T ss_dssp -----------CSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECC
T ss_pred -----------CcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEE
Confidence 025789999999999999999999999999999888899999999999999999999999999999999
Q ss_pred eCCCC-----c---------eEEEecC----------------------CccccccCcceeeeEEEEcCCCC---EEEEE
Q 023643 229 DCKSG-----K---------CIKVIDP----------------------VKDKQLKGVISCVSCITLDASES---WLVRV 269 (279)
Q Consensus 229 d~~~~-----~---------~~~~~~~----------------------~~~~~~~~~~~~v~~~~~~~~~~---~l~~~ 269 (279)
|+..+ + .+..+.. .....+.+|...|.+++|+|++. +||+|
T Consensus 425 d~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg 504 (524)
T 2j04_B 425 NAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFS 504 (524)
T ss_dssp BSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEE
T ss_pred echHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhh
Confidence 97432 0 1111110 11134567889999999999964 99999
Q ss_pred cCcceEEeCC
Q 023643 270 RATNYVILFS 279 (279)
Q Consensus 270 ~~d~~i~~wd 279 (279)
+.||.|+||+
T Consensus 505 ~~~g~vrlw~ 514 (524)
T 2j04_B 505 NSAGLLTLEY 514 (524)
T ss_dssp CTTSEEEEEE
T ss_pred ccCceEEEEE
Confidence 9999999995
No 51
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=245.24 Aligned_cols=253 Identities=9% Similarity=0.098 Sum_probs=187.1
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCC---CCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGS---PDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL 78 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 78 (279)
||.|++||+++....... ...|...|.+++|+| + +.+|++|+.||.|++||+.+.
T Consensus 43 d~~v~iw~~~~~~~~~~~-~~~~~~~v~~~~~~~----~~~~~~~l~~~~~dg~i~iwd~~~~----------------- 100 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLR-EIEKAKPIKCGTFGA----TSLQQRYLATGDFGGNLHIWNLEAP----------------- 100 (357)
T ss_dssp CEEEEEEEECSSSEEEEE-EEEESSCEEEEECTT----CCTTTCCEEEEETTSCEEEECTTSC-----------------
T ss_pred CcEEEEEeCCCCccccee-eecccCcEEEEEEcC----CCCCCceEEEecCCCeEEEEeCCCC-----------------
Confidence 899999998876533232 336899999999999 6 699999999999999999983
Q ss_pred eccccccccCCccCeEEEEe------cCCCCceEEEEeeCCCcEEEeecCCCccCcceee-eccCcccceEEee------
Q 023643 79 GIEPDGFLHGHDGPAYDVKF------YGGNEDALLLSCGDDGRICGWRWKEFTESKVPIN-LQGNHVKPVLDLV------ 145 (279)
Q Consensus 79 ~~~~~~~~~~h~~~v~~~~~------~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~------ 145 (279)
..++..+.+|...|.++.| +|+++ +|++++.||.|++||++.......... ..++....+..+.
T Consensus 101 -~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (357)
T 3i2n_A 101 -EMPVYSVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYN 177 (357)
T ss_dssp -SSCSEEECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC
T ss_pred -CccEEEEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccC
Confidence 2267778899999999965 57777 999999999999999986542211111 1111111222221
Q ss_pred ------------------cCCCCCccccCCCCCCceeEEEcC---CCCeEEEecCCCeEEEEecCCCcEEEEee-----c
Q 023643 146 ------------------NHQHKGPWGALSPVPENNAIAVDP---QGGAIFSAAGDSCAYCWDVESSRIKMVFK-----G 199 (279)
Q Consensus 146 ------------------~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~ 199 (279)
............+...|.+++|+| ++.++++++.|+.|++||+++++.+..+. +
T Consensus 178 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 257 (357)
T 3i2n_A 178 QEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKA 257 (357)
T ss_dssp -CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEEC
T ss_pred CCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCC
Confidence 000011111133456799999999 89999999999999999998876554444 8
Q ss_pred CCcceEEEEEcCCCc-EEEEecCCCeEEEEeCCCCceEEEecCC-----------ccccccCcceeeeEEEEcCCCCEEE
Q 023643 200 HSDYLHCIVARNSTN-QIVTGSEDGTARIWDCKSGKCIKVIDPV-----------KDKQLKGVISCVSCITLDASESWLV 267 (279)
Q Consensus 200 ~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~ 267 (279)
|...|++++|+|+++ +|++++.||.|++||++.+......... ....+.+|...|++++|+|++++|+
T Consensus 258 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 337 (357)
T 3i2n_A 258 HKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLC 337 (357)
T ss_dssp CSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEE
T ss_pred CcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEE
Confidence 999999999999988 8999999999999999865322111000 0011267889999999999999998
Q ss_pred -EEcCcceEEeCC
Q 023643 268 -RVRATNYVILFS 279 (279)
Q Consensus 268 -~~~~d~~i~~wd 279 (279)
+++.||.|++||
T Consensus 338 ~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 338 VCSSFDQTVRVLI 350 (357)
T ss_dssp EEEETTSEEEEEE
T ss_pred EEecCCCcEEEEE
Confidence 899999999996
No 52
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-36 Score=239.72 Aligned_cols=239 Identities=13% Similarity=0.108 Sum_probs=195.2
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.|++||+... ..+..+..|...|.+++|+| ++++|++++.||.|++||+.+ +
T Consensus 52 ~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~----~~~~l~s~~~dg~i~iwd~~~-------------------~ 106 (369)
T 3zwl_B 52 KDSSASVWYSLNG--ERLGTLDGHTGTIWSIDVDC----FTKYCVTGSADYSIKLWDVSN-------------------G 106 (369)
T ss_dssp SSSCEEEEETTTC--CEEEEECCCSSCEEEEEECT----TSSEEEEEETTTEEEEEETTT-------------------C
T ss_pred CCCEEEEEeCCCc--hhhhhhhhcCCcEEEEEEcC----CCCEEEEEeCCCeEEEEECCC-------------------C
Confidence 3899999998876 44777888999999999999 899999999999999999998 4
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCC-----CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcccc
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDD-----GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGA 155 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (279)
+.+..+. |..++.+++|+|++. +|++++.+ +.|++||++............... +..+.....
T Consensus 107 ~~~~~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~------ 174 (369)
T 3zwl_B 107 QCVATWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEP---IHKIITHEG------ 174 (369)
T ss_dssp CEEEEEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSC---SEEEECCTT------
T ss_pred cEEEEee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceeecccccce---eeeccCCcC------
Confidence 5555555 788999999999998 99999998 999999987643332222222111 111111111
Q ss_pred CCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCC-CcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCc
Q 023643 156 LSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVES-SRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGK 234 (279)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~ 234 (279)
...+.+++|+|++++|++++.|+.|++||+++ ++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++
T Consensus 175 ---~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 251 (369)
T 3zwl_B 175 ---LDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ 251 (369)
T ss_dssp ---CCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred ---ccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCc
Confidence 11489999999999999999999999999998 78889999999999999999999999999999999999999988
Q ss_pred eEEEecCCc-----------------------------------------------cccccCcceeeeEEEEcCCCCEEE
Q 023643 235 CIKVIDPVK-----------------------------------------------DKQLKGVISCVSCITLDASESWLV 267 (279)
Q Consensus 235 ~~~~~~~~~-----------------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~ 267 (279)
.+..+.... ...+.+|...|++++|+|++++|+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 331 (369)
T 3zwl_B 252 VLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYA 331 (369)
T ss_dssp EEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred eeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEE
Confidence 776654211 012346888999999999999999
Q ss_pred EEcCcceEEeCC
Q 023643 268 RVRATNYVILFS 279 (279)
Q Consensus 268 ~~~~d~~i~~wd 279 (279)
+++.||.|++|+
T Consensus 332 s~~~dg~v~iw~ 343 (369)
T 3zwl_B 332 SGGEDGFIRLHH 343 (369)
T ss_dssp EEETTSEEEEEE
T ss_pred EEcCCCeEEEEE
Confidence 999999999996
No 53
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=4.6e-38 Score=250.62 Aligned_cols=247 Identities=9% Similarity=-0.018 Sum_probs=166.7
Q ss_pred CCCceeeeccccccc---cceeeeeecccceEEEEECCCC----CCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcc
Q 023643 1 MCGDSTNWDEDAYRK---SILKEREILTRTVFRTVWGPSK----DGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSK 73 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~----~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 73 (279)
.|++|||||.+.... ..+..+.+|.+.|++++|+|.. ..++++||+|+.|++|+|||+.+
T Consensus 109 ~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~------------- 175 (393)
T 4gq1_A 109 QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD------------- 175 (393)
T ss_dssp TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET-------------
T ss_pred CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC-------------
Confidence 489999999887643 2345678999999999998721 12678999999999999999987
Q ss_pred cceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcc
Q 023643 74 VQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPW 153 (279)
Q Consensus 74 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (279)
..++..+..|..+|.+++|+|++. .+|++++.|++|++||+++..............................
T Consensus 176 ------~~~~~~~~~~~~~v~~v~~~p~~~-~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 248 (393)
T 4gq1_A 176 ------EGPILAGYPLSSPGISVQFRPSNP-NQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTC 248 (393)
T ss_dssp ------TEEEEEEEECSSCEEEEEEETTEE-EEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC---
T ss_pred ------CceeeeecCCCCCcEEEEECCCCC-ceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeee
Confidence 455566777889999999999875 4899999999999999976533222221111111111111111111111
Q ss_pred ccCCCCCCceeEEEc-CCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEE------------------EcC--C
Q 023643 154 GALSPVPENNAIAVD-PQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIV------------------ARN--S 212 (279)
Q Consensus 154 ~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~------------------~~~--~ 212 (279)
....+...+.++.|. |+++.+++++.|+.+++||+..++....+..|...+..+. ++| +
T Consensus 249 ~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (393)
T 4gq1_A 249 HSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYM 328 (393)
T ss_dssp ---CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCT
T ss_pred ecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCC
Confidence 122344568899987 7999999999999999999998877666655554444333 333 3
Q ss_pred CcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceE
Q 023643 213 TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYV 275 (279)
Q Consensus 213 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 275 (279)
+.++++|+.||.|++||+.+++..... ..|..+|.+++|+|||++||+++.+|.+
T Consensus 329 ~~~~~sgs~Dg~V~lwd~~~~~~~~~~--------~~~~~~V~svafspdG~~LA~as~~Gv~ 383 (393)
T 4gq1_A 329 DYFATAHSQHGLIQLINTYEKDSNSIP--------IQLGMPIVDFCWHQDGSHLAIATEGSVL 383 (393)
T ss_dssp TEEEEEETTTTEEEEEETTCTTCCEEE--------EECSSCEEEEEECTTSSEEEEEESSEEE
T ss_pred CEEEEEECCCCEEEEEECCCCcEEEEe--------cCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 457788999999999999999888776 5777899999999999999999988864
No 54
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.8e-37 Score=249.39 Aligned_cols=245 Identities=16% Similarity=0.133 Sum_probs=184.9
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccc------------ccc
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKL------------PLG 68 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~------------~~~ 68 (279)
.||.|+|||++.........+.+|.+.|++++|+|. ++++|++|+.||+|++||+++..... .+.
T Consensus 140 ~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~---~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 216 (435)
T 4e54_B 140 KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL---NTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLD 216 (435)
T ss_dssp TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS---CTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEE
T ss_pred CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC---CCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEE
Confidence 489999999987765556667789999999999984 78999999999999999997643211 111
Q ss_pred cCCcc----------cceee--eccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccC
Q 023643 69 LSNSK----------VQQLL--GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGN 136 (279)
Q Consensus 69 ~~~~~----------~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 136 (279)
+.+.. .-.++ .++.+..+.+|..+|.+++|+|++. .+|++++.|+.|++||++............+
T Consensus 217 ~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~- 294 (435)
T 4e54_B 217 VSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLP- 294 (435)
T ss_dssp EETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCB-
T ss_pred ECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCc-eEEEEecCcceeeEEecccccccceEEEeee-
Confidence 11111 00111 1456677889999999999999876 4789999999999999876433222222111
Q ss_pred cccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCc------ceEEEEEc
Q 023643 137 HVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSD------YLHCIVAR 210 (279)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------~i~~i~~~ 210 (279)
+...|++++|+|++.+|++++.|+.|++||+.+++....+..|.. .+....|+
T Consensus 295 ---------------------h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (435)
T 4e54_B 295 ---------------------HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWH 353 (435)
T ss_dssp ---------------------CSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEEC
T ss_pred ---------------------ccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEc
Confidence 122478999999999999999999999999999988877765542 23345677
Q ss_pred CCCcEEEEec------------CCCeEEEEeCCCCceEEEecCCccccccCcceeeeEE-EEcCCCCEEEEEcCcceEEe
Q 023643 211 NSTNQIVTGS------------EDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCI-TLDASESWLVRVRATNYVIL 277 (279)
Q Consensus 211 ~~~~~l~~~~------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~d~~i~~ 277 (279)
|++.++++++ .++.|++||..+++.+..+. .+|...|.++ +|+|+|++|++|+ |+.|+|
T Consensus 354 ~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~-------~~~~~~v~s~~~fspdg~~lasg~-d~~i~i 425 (435)
T 4e54_B 354 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY-------DPESSGISSLNEFNPMGDTLASAM-GYHILI 425 (435)
T ss_dssp SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC-------CSSCCCCCCEEEECTTSSCEEEEC-SSEEEE
T ss_pred CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe-------CCCCCcEEEEEEECCCCCEEEEEc-CCcEEE
Confidence 7666666554 34679999999999988874 4677788887 6999999999886 789999
Q ss_pred CC
Q 023643 278 FS 279 (279)
Q Consensus 278 wd 279 (279)
||
T Consensus 426 W~ 427 (435)
T 4e54_B 426 WS 427 (435)
T ss_dssp CC
T ss_pred EE
Confidence 97
No 55
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.3e-37 Score=245.65 Aligned_cols=241 Identities=12% Similarity=0.134 Sum_probs=186.7
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.|++||++.. ..+..+..|...|.+++|+|. ++.+|++++.||.|++||+.+ +
T Consensus 93 ~dg~i~v~d~~~~--~~~~~~~~~~~~i~~~~~~~~---~~~~l~s~~~dg~i~iwd~~~-------------------~ 148 (366)
T 3k26_A 93 SRGIIRIINPITM--QCIKHYVGHGNAINELKFHPR---DPNLLLSVSKDHALRLWNIQT-------------------D 148 (366)
T ss_dssp TTCEEEEECTTTC--CEEEEEESCCSCEEEEEECSS---CTTEEEEEETTSCEEEEETTT-------------------T
T ss_pred CCCEEEEEEchhc--eEeeeecCCCCcEEEEEECCC---CCCEEEEEeCCCeEEEEEeec-------------------C
Confidence 4899999998876 346778889999999999994 689999999999999999987 3
Q ss_pred cccccc---cCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceee-----eccCcccceEEeecCCCCCc
Q 023643 81 EPDGFL---HGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPIN-----LQGNHVKPVLDLVNHQHKGP 152 (279)
Q Consensus 81 ~~~~~~---~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 152 (279)
+.+..+ .+|...|.+++|+|++. +|++++.||.|++||++.......... ..+.. ........ .....
T Consensus 149 ~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~ 224 (366)
T 3k26_A 149 TLVAIFGGVEGHRDEVLSADYDLLGE--KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTN-RPFISQKI-HFPDF 224 (366)
T ss_dssp EEEEEECSTTSCSSCEEEEEECTTSS--EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCS-SCCCCEEE-CCCSE
T ss_pred eEEEEecccccccCceeEEEECCCCC--EEEEecCCCCEEEEECCCCccccccceeEEecCCCCc-ccccceee-ccCcc
Confidence 444444 67999999999999998 999999999999999875422111000 00000 00000000 00000
Q ss_pred cccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcE--------------EEEeecCCcceEEEEEcCC--CcEE
Q 023643 153 WGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRI--------------KMVFKGHSDYLHCIVARNS--TNQI 216 (279)
Q Consensus 153 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--------------~~~~~~~~~~i~~i~~~~~--~~~l 216 (279)
.....+...|.+++|+ ++++++++.|+.|++||+++++. +..+..|...|.+++|+|+ +++|
T Consensus 225 ~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l 302 (366)
T 3k26_A 225 STRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKML 302 (366)
T ss_dssp EECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEE
T ss_pred ccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEE
Confidence 0011244568999998 67999999999999999987643 7788899999999999999 9999
Q ss_pred EEecCCCeEEEEeCCCCceE----EEecCCccccccCc--ceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 217 VTGSEDGTARIWDCKSGKCI----KVIDPVKDKQLKGV--ISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 217 ~~~~~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
++++.||.|++||+++++.. ..+ ..| ...|++++|+|++++|++++.||.|++||
T Consensus 303 ~~~~~dg~i~vwd~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 303 ALGNQVGKLYVWDLEVEDPHKAKCTTL--------THHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp EEECTTSCEEEEECCSSSGGGCEEEEE--------CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEecCCcEEEEECCCCCCccccceEE--------cccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence 99999999999999987643 345 444 78999999999999999999999999996
No 56
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.7e-37 Score=247.60 Aligned_cols=218 Identities=14% Similarity=0.168 Sum_probs=180.6
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
||.|++||...... ...+..| ..+....|+| ++++|++|+.||.|++||+.+ .+
T Consensus 77 d~~v~i~d~~~~~~--~~~~~~~-~~~~~~~~~~----~~~~l~~~~~dg~i~iwd~~~-------------------~~ 130 (420)
T 3vl1_A 77 DGHDFLFNTIIRDG--SKMLKRA-DYTAVDTAKL----QMRRFILGTTEGDIKVLDSNF-------------------NL 130 (420)
T ss_dssp TTEEEEEECCSEET--TTTSCSC-CEEEEEEECS----SSCEEEEEETTSCEEEECTTS-------------------CE
T ss_pred CCcEEEEEecccce--eeEEecC-CceEEEEEec----CCCEEEEEECCCCEEEEeCCC-------------------cc
Confidence 78999999887643 3344444 4455557888 899999999999999999987 56
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
....+.+|.+.|.+++|+|+++ +|++++.|+.|++||+++.. ....+.++ ...
T Consensus 131 ~~~~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~---~~~~~~~h----------------------~~~ 183 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGS---NPRTLIGH----------------------RAT 183 (420)
T ss_dssp EEEETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCC---CCEEEECC----------------------SSC
T ss_pred eeeecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCc---CceEEcCC----------------------CCc
Confidence 6667788999999999999998 99999999999999987542 22222221 124
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec---CCcceEE---------------------EEEcCCCcEEE
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG---HSDYLHC---------------------IVARNSTNQIV 217 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~i~~---------------------i~~~~~~~~l~ 217 (279)
|.+++|+|++++|++++.|+.|++||+++++.+..+.. +...+.+ ++|+|++++|+
T Consensus 184 v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 263 (420)
T 3vl1_A 184 VTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVI 263 (420)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEE
T ss_pred EEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEE
Confidence 79999999999999999999999999999999998875 3344444 45578899999
Q ss_pred EecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCC-EEEEEcCcceEEeCC
Q 023643 218 TGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASES-WLVRVRATNYVILFS 279 (279)
Q Consensus 218 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd 279 (279)
+++.||.|++||+++++....+. ..|...|.+++|+|++. +|++|+.||.|++||
T Consensus 264 ~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd 319 (420)
T 3vl1_A 264 AGHVSGVITVHNVFSKEQTIQLP-------SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWD 319 (420)
T ss_dssp EEETTSCEEEEETTTCCEEEEEC-------CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred EEcCCCeEEEEECCCCceeEEcc-------cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEE
Confidence 99999999999999998888774 46788999999999998 999999999999996
No 57
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.2e-36 Score=246.21 Aligned_cols=238 Identities=15% Similarity=0.209 Sum_probs=187.4
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.|++||+++.+ .+..+.+|...|.+++|+| ++ +|++|+.||+|++||+.+ +
T Consensus 140 ~dg~i~vwd~~~~~--~~~~~~~h~~~V~~l~~~~----~~-~l~s~s~dg~i~vwd~~~-------------------~ 193 (464)
T 3v7d_B 140 DDKMIRVYDSINKK--FLLQLSGHDGGVWALKYAH----GG-ILVSGSTDRTVRVWDIKK-------------------G 193 (464)
T ss_dssp TTSCEEEEETTTTE--EEEEECCCSSCEEEEEECS----TT-EEEEEETTSCEEEEETTT-------------------T
T ss_pred CCCcEEEEECCCCc--EEEEEeCCCcCEEEEEEcC----CC-EEEEEeCCCCEEEEECCC-------------------C
Confidence 48999999988774 4778889999999999999 66 999999999999999998 5
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCC-CccccCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHK-GPWGALSPV 159 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 159 (279)
+.+..+.+|.++|.+++|++...+.+|++++.||.|++||++........... ...+.......... .......+.
T Consensus 194 ~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 270 (464)
T 3v7d_B 194 CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE---HDYPLVFHTPEENPYFVGVLRGHM 270 (464)
T ss_dssp EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC---------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccccccc---CCcceEeeccCCCeEEEEEccCcc
Confidence 67778889999999999995332249999999999999998754322111000 00000000000000 000011122
Q ss_pred CCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEe
Q 023643 160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239 (279)
Q Consensus 160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 239 (279)
..+.++ +++++++++++.|+.|++||+++++++..+.+|...|.+++|+|+++++++|+.||.|++||+++++++..+
T Consensus 271 ~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 348 (464)
T 3v7d_B 271 ASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348 (464)
T ss_dssp SCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 234554 677889999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 240 DPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 240 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+|...|.+++|+ +.+|++|+.||.|++||
T Consensus 349 --------~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd 378 (464)
T 3v7d_B 349 --------QGHTALVGLLRLS--DKFLVSAAADGSIRGWD 378 (464)
T ss_dssp --------CCCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred --------eCCCCcEEEEEEc--CCEEEEEeCCCcEEEEE
Confidence 6888999999997 58999999999999996
No 58
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.5e-36 Score=242.77 Aligned_cols=231 Identities=18% Similarity=0.171 Sum_probs=186.0
Q ss_pred CCceeeeccccccc--cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643 2 CGDSTNWDEDAYRK--SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG 79 (279)
Q Consensus 2 dG~v~iw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 79 (279)
||.|+||+++.... ..+..+.+|...|.+++|+|. ++++|++|+.||+|++|++.+.......
T Consensus 56 ~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~---~~~~l~s~s~dg~v~vw~~~~~~~~~~~------------ 120 (402)
T 2aq5_A 56 GGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPH---NDNVIASGSEDCTVMVWEIPDGGLVLPL------------ 120 (402)
T ss_dssp SCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTT---CTTEEEEEETTSEEEEEECCTTCCSSCB------------
T ss_pred CCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCC---CCCEEEEEeCCCeEEEEEccCCCCcccc------------
Confidence 79999999754321 345567889999999999994 6889999999999999999874211100
Q ss_pred ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeec-cCcccceEEeecCCCCCccccCCC
Q 023643 80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQ-GNHVKPVLDLVNHQHKGPWGALSP 158 (279)
Q Consensus 80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 158 (279)
.+++..+.+|...|.+++|+|++. .+|++++.||.|++||+++. .....+. ..+
T Consensus 121 ~~~~~~~~~h~~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~--------------------- 175 (402)
T 2aq5_A 121 REPVITLEGHTKRVGIVAWHPTAQ-NVLLSAGCDNVILVWDVGTG---AAVLTLGPDVH--------------------- 175 (402)
T ss_dssp CSCSEEEECCSSCEEEEEECSSBT-TEEEEEETTSCEEEEETTTT---EEEEEECTTTC---------------------
T ss_pred CCceEEecCCCCeEEEEEECcCCC-CEEEEEcCCCEEEEEECCCC---CccEEEecCCC---------------------
Confidence 156677889999999999999973 29999999999999998753 2222221 111
Q ss_pred CCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEe-ecCCcc-eEEEEEcCCCcEEEEe---cCCCeEEEEeCCCC
Q 023643 159 VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVF-KGHSDY-LHCIVARNSTNQIVTG---SEDGTARIWDCKSG 233 (279)
Q Consensus 159 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~-i~~i~~~~~~~~l~~~---~~d~~i~vwd~~~~ 233 (279)
...|.+++|+|++.+|++++.|+.|++||+++++.+..+ ..|.+. +.+++|+|++++|++| +.|+.|++||++++
T Consensus 176 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 176 PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHL 255 (402)
T ss_dssp CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBC
T ss_pred CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccc
Confidence 124799999999999999999999999999999999988 678776 8999999999999999 89999999999987
Q ss_pred ce-EEEecCCccccccCcceeeeEEEEcCCCCEEE-EEcCcceEEeCC
Q 023643 234 KC-IKVIDPVKDKQLKGVISCVSCITLDASESWLV-RVRATNYVILFS 279 (279)
Q Consensus 234 ~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~wd 279 (279)
+. +.... ..|...+.+++|+|++++|+ +|+.||.|++||
T Consensus 256 ~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d 296 (402)
T 2aq5_A 256 EEPLSLQE-------LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFE 296 (402)
T ss_dssp SSCSEEEE-------CCCCSSCEEEEEETTTTEEEEEETTCSCEEEEE
T ss_pred cCCceEEe-------ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEE
Confidence 64 33331 25667799999999999986 566899999996
No 59
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=8.1e-38 Score=242.22 Aligned_cols=206 Identities=16% Similarity=0.198 Sum_probs=164.0
Q ss_pred eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEec
Q 023643 20 EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFY 99 (279)
Q Consensus 20 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 99 (279)
.+.+|.+.|++++|+| ++++||+|+.|++|+|||+.++. ...+..+.+|.++|.+++|+
T Consensus 8 ~~~~H~~~V~~v~~s~----~g~~lasgs~D~~v~lwd~~~~~-----------------~~~~~~l~gH~~~V~~v~~~ 66 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDY----YGTRLATCSSDRSVKIFDVRNGG-----------------QILIADLRGHEGPVWQVAWA 66 (316)
T ss_dssp ------CCEEEEEECG----GGCEEEEEETTTEEEEEEEETTE-----------------EEEEEEEECCSSCEEEEEEC
T ss_pred ecccccCeEEEeeEcC----CCCEEEEEeCCCeEEEEEecCCC-----------------cEEEEEEcCCCccEEEEEeC
Confidence 4568999999999999 89999999999999999998631 12456788999999999998
Q ss_pred CC--CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC--CCeEE
Q 023643 100 GG--NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ--GGAIF 175 (279)
Q Consensus 100 ~~--~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~ 175 (279)
|. +. +|++++.|++|++||+++.. ......+.++ ...|++++|+|+ +.+|+
T Consensus 67 ~~~~~~--~l~s~s~D~~v~iWd~~~~~-~~~~~~~~~h----------------------~~~V~~v~~~p~~~g~~la 121 (316)
T 3bg1_A 67 HPMYGN--ILASCSYDRKVIIWREENGT-WEKSHEHAGH----------------------DSSVNSVCWAPHDYGLILA 121 (316)
T ss_dssp CGGGSS--CEEEEETTSCEEEECCSSSC-CCEEEEECCC----------------------SSCCCEEEECCTTTCSCEE
T ss_pred CCCCCC--EEEEEECCCEEEEEECCCCc-ceEEEEccCC----------------------CCceEEEEECCCCCCcEEE
Confidence 64 55 99999999999999986431 1111122221 124799999998 77999
Q ss_pred EecCCCeEEEEecCCCcE---EEEeecCCcceEEEEEcCC-----------------CcEEEEecCCCeEEEEeCCCC--
Q 023643 176 SAAGDSCAYCWDVESSRI---KMVFKGHSDYLHCIVARNS-----------------TNQIVTGSEDGTARIWDCKSG-- 233 (279)
Q Consensus 176 ~~~~d~~i~i~d~~~~~~---~~~~~~~~~~i~~i~~~~~-----------------~~~l~~~~~d~~i~vwd~~~~-- 233 (279)
+|+.|+.|++||++.+.. ...+.+|...+.+++|+|+ +++|++|+.|++|++||++.+
T Consensus 122 sgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~ 201 (316)
T 3bg1_A 122 CGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ 201 (316)
T ss_dssp EECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC
T ss_pred EEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc
Confidence 999999999999987632 3456789999999999997 478999999999999999765
Q ss_pred -ceEEEecCCccccccCcceeeeEEEEcCCC----CEEEEEcCcceEEeCC
Q 023643 234 -KCIKVIDPVKDKQLKGVISCVSCITLDASE----SWLVRVRATNYVILFS 279 (279)
Q Consensus 234 -~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~~wd 279 (279)
+++..+ .+|...|.+++|+|++ .+|++|+.|++|++||
T Consensus 202 ~~~~~~l--------~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~ 244 (316)
T 3bg1_A 202 WKEEQKL--------EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244 (316)
T ss_dssp EEEEECC--------BCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred cceeeec--------ccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence 344444 7899999999999986 8899999999999995
No 60
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.3e-36 Score=243.63 Aligned_cols=231 Identities=16% Similarity=0.256 Sum_probs=185.9
Q ss_pred CCCceeeeccccc--------cccceeeeeecccceEEEEECCCCCCCCC-EEEEecCCCcEEEEeCCCCCcccccccCC
Q 023643 1 MCGDSTNWDEDAY--------RKSILKEREILTRTVFRTVWGPSKDGSPD-TIVIASSDGSITSYSIPSCISKLPLGLSN 71 (279)
Q Consensus 1 ~dG~v~iw~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 71 (279)
.||.|++|++... ....+..+.+|...|++++|+| ++. +|++|+.||.|++|++........
T Consensus 149 ~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~~~~l~s~~~dg~i~vwd~~~~~~~~~----- 219 (430)
T 2xyi_A 149 PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNP----NLNGYLLSASDDHTICLWDINATPKEHR----- 219 (430)
T ss_dssp SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECT----TSTTEEEEECTTSCEEEEETTSCCBGGG-----
T ss_pred CCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCC----CCCCeEEEEeCCCeEEEEeCCCCCCCCc-----
Confidence 3799999998762 2345667889999999999999 666 999999999999999987321100
Q ss_pred cccceeeeccccccccCCccCeEEEEecC-CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCC
Q 023643 72 SKVQQLLGIEPDGFLHGHDGPAYDVKFYG-GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHK 150 (279)
Q Consensus 72 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (279)
. ..+...+.+|...|.+++|+| ++. +|++++.||.|++||++..........+..+
T Consensus 220 -----~--~~~~~~~~~h~~~v~~v~~~p~~~~--~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~-------------- 276 (430)
T 2xyi_A 220 -----V--IDAKNIFTGHTAVVEDVAWHLLHES--LFGSVADDQKLMIWDTRNNNTSKPSHTVDAH-------------- 276 (430)
T ss_dssp -----E--EECSEEECCCSSCEEEEEECSSCTT--EEEEEETTSEEEEEETTCSCSSSCSEEEECC--------------
T ss_pred -----e--eccceeecCCCCCEeeeEEeCCCCC--EEEEEeCCCeEEEEECCCCCCCcceeEeecC--------------
Confidence 0 123456678999999999999 454 9999999999999999864322222222211
Q ss_pred CccccCCCCCCceeEEEcCCCC-eEEEecCCCeEEEEecCC-CcEEEEeecCCcceEEEEEcCCC-cEEEEecCCCeEEE
Q 023643 151 GPWGALSPVPENNAIAVDPQGG-AIFSAAGDSCAYCWDVES-SRIKMVFKGHSDYLHCIVARNST-NQIVTGSEDGTARI 227 (279)
Q Consensus 151 ~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~v 227 (279)
...|++++|+|++. ++++|+.||.|++||+++ ..++..+..|...|.+++|+|++ .+|++++.|+.|+|
T Consensus 277 --------~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~i 348 (430)
T 2xyi_A 277 --------TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 348 (430)
T ss_dssp --------SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEE
T ss_pred --------CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEE
Confidence 12479999999987 688999999999999998 56788899999999999999987 57999999999999
Q ss_pred EeCCCC--------------ceEEEecCCccccccCcceeeeEEEEcCCCC-EEEEEcCcceEEeCC
Q 023643 228 WDCKSG--------------KCIKVIDPVKDKQLKGVISCVSCITLDASES-WLVRVRATNYVILFS 279 (279)
Q Consensus 228 wd~~~~--------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd 279 (279)
||+... +.+..+ .+|...|.+++|+|+++ +|++++.||.|++|+
T Consensus 349 wd~~~~~~~~~~~~~~~~~~~~~~~~--------~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 349 WDLSKIGEEQSTEDAEDGPPELLFIH--------GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp EEGGGTTCCCCHHHHHHCCTTEEEEC--------CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred EeCCCCccccCccccccCCcceEEEc--------CCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 999872 444444 68888999999999999 899999999999995
No 61
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-37 Score=245.31 Aligned_cols=229 Identities=19% Similarity=0.284 Sum_probs=185.9
Q ss_pred CCceeeecccccccc-ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 2 CGDSTNWDEDAYRKS-ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 2 dG~v~iw~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
||.|++||+++.... .+..+ .|...|.+++|+| ++.+|++++.||.|++|++.+.... .
T Consensus 44 d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~----~~~~l~~~~~dg~v~vw~~~~~~~~---------------~ 103 (416)
T 2pm9_A 44 DSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSH----NNKIIAGALDNGSLELYSTNEANNA---------------I 103 (416)
T ss_dssp CCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECS----SSSCEEEEESSSCEEEECCSSTTSC---------------C
T ss_pred CCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECC----CCCeEEEEccCCeEEEeeccccccc---------------c
Confidence 789999998876532 23333 5889999999999 8999999999999999999862110 2
Q ss_pred cccccccCCccCeEEEEecCC-CCceEEEEeeCCCcEEEeecCCCccCc---ceeeeccCcccceEEeecCCCCCccccC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGG-NEDALLLSCGDDGRICGWRWKEFTESK---VPINLQGNHVKPVLDLVNHQHKGPWGAL 156 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (279)
+.+..+.+|..+|.+++|+|+ +. +|++++.|+.|++||++...... ...... ...
T Consensus 104 ~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-------------------~~~ 162 (416)
T 2pm9_A 104 NSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPSNYTPLTPG-------------------QSM 162 (416)
T ss_dssp CEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC-------------------CSC
T ss_pred cchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCccccccccccccc-------------------ccc
Confidence 355677889999999999998 66 99999999999999987643110 000000 001
Q ss_pred CCCCCceeEEEcCC-CCeEEEecCCCeEEEEecCCCcEEEEeecC------CcceEEEEEcCCC-cEEEEecCCC---eE
Q 023643 157 SPVPENNAIAVDPQ-GGAIFSAAGDSCAYCWDVESSRIKMVFKGH------SDYLHCIVARNST-NQIVTGSEDG---TA 225 (279)
Q Consensus 157 ~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------~~~i~~i~~~~~~-~~l~~~~~d~---~i 225 (279)
.+...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..+ ...|.+++|+|++ .++++++.|+ .|
T Consensus 163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i 242 (416)
T 2pm9_A 163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI 242 (416)
T ss_dssp CSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC
T ss_pred CCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceE
Confidence 12234899999998 789999999999999999999999988876 7899999999986 6899999999 99
Q ss_pred EEEeCCCC-ceEEEecCCcccccc-CcceeeeEEEEcC-CCCEEEEEcCcceEEeCC
Q 023643 226 RIWDCKSG-KCIKVIDPVKDKQLK-GVISCVSCITLDA-SESWLVRVRATNYVILFS 279 (279)
Q Consensus 226 ~vwd~~~~-~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd 279 (279)
++||++++ +.+..+ . +|...|.+++|+| ++++|++++.|+.|++||
T Consensus 243 ~~~d~~~~~~~~~~~--------~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd 291 (416)
T 2pm9_A 243 LIWDLRNANTPLQTL--------NQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291 (416)
T ss_dssp CEEETTSTTSCSBCC--------CSCCSSCEEEEEECSSCSSCEEEEESSSEEEEEC
T ss_pred EEEeCCCCCCCcEEe--------ecCccCceeEEEeCCCCCCeEEEEeCCCCEEEee
Confidence 99999986 455555 5 7888999999999 999999999999999997
No 62
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-36 Score=240.40 Aligned_cols=241 Identities=13% Similarity=0.128 Sum_probs=189.3
Q ss_pred CCCceeeecc----ccccc----cceeeeee----------cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCC
Q 023643 1 MCGDSTNWDE----DAYRK----SILKEREI----------LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCI 62 (279)
Q Consensus 1 ~dG~v~iw~~----~~~~~----~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 62 (279)
.||.|++|++ .+... .....+.. |...|.+++|+| ++++|++++.||.|++|+..
T Consensus 66 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----~~~~l~~~~~dg~i~i~~~~--- 138 (425)
T 1r5m_A 66 KNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH----DGNSIVTGVENGELRLWNKT--- 138 (425)
T ss_dssp TBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT----TSSEEEEEETTSCEEEEETT---
T ss_pred CCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC----CCCEEEEEeCCCeEEEEeCC---
Confidence 3799999999 65541 01222222 678999999999 89999999999999999933
Q ss_pred cccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcc----
Q 023643 63 SKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHV---- 138 (279)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~---- 138 (279)
++.+..+..|..+|.+++|+|+++ +|++++.|+.|++||+++.... ..+..+..
T Consensus 139 -----------------~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~ 196 (425)
T 1r5m_A 139 -----------------GALLNVLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVM---QHFELKETGGSS 196 (425)
T ss_dssp -----------------SCEEEEECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEE---EEECCC------
T ss_pred -----------------CCeeeeccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEE---EEeeccccCccc
Confidence 456677888999999999999998 9999999999999998754221 11111100
Q ss_pred ------------------------------cceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEec
Q 023643 139 ------------------------------KPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDV 188 (279)
Q Consensus 139 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 188 (279)
..+.-+.............+...|.+++|+|++++|++++.|+.|++||+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 276 (425)
T 1r5m_A 197 INAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHG 276 (425)
T ss_dssp ---------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECS
T ss_pred eeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 00111111111111122345567999999999999999999999999999
Q ss_pred CCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEE
Q 023643 189 ESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVR 268 (279)
Q Consensus 189 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 268 (279)
++++.+..+..|...|.+++|+|++ ++++++.|+.|++||+++++.+..+ ..|...|.+++|+|++++|++
T Consensus 277 ~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~--------~~~~~~i~~~~~s~~~~~l~~ 347 (425)
T 1r5m_A 277 GNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS--------IVDGVPIFAGRISQDGQKYAV 347 (425)
T ss_dssp SSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE--------ECTTCCEEEEEECTTSSEEEE
T ss_pred CCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec--------ccCCccEEEEEEcCCCCEEEE
Confidence 9999999999999999999999999 9999999999999999999998888 677889999999999999999
Q ss_pred EcCcceEEeCC
Q 023643 269 VRATNYVILFS 279 (279)
Q Consensus 269 ~~~d~~i~~wd 279 (279)
++.||.|++||
T Consensus 348 ~~~dg~i~i~~ 358 (425)
T 1r5m_A 348 AFMDGQVNVYD 358 (425)
T ss_dssp EETTSCEEEEE
T ss_pred EECCCeEEEEE
Confidence 99999999996
No 63
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.4e-36 Score=241.48 Aligned_cols=223 Identities=11% Similarity=0.056 Sum_probs=178.6
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.|++||+++.....+.....|...|.+++|+| ++.+|++|+.||.|++||+. .
T Consensus 139 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~i~d~~--------------------~ 194 (383)
T 3ei3_B 139 IRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSV----SRQMLATGDSTGRLLLLGLD--------------------G 194 (383)
T ss_dssp TTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEET----TTTEEEEEETTSEEEEEETT--------------------S
T ss_pred CCCEEEEEECCCCceEEEeccCCCCCCeEEEEECC----CCCEEEEECCCCCEEEEECC--------------------C
Confidence 48999999998754333434445568899999999 89999999999999999994 4
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
+++..+.+|...|.+++|+|+++ .+|++++.|+.|++||++............+ + ..
T Consensus 195 ~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~---------------------~~ 251 (383)
T 3ei3_B 195 HEIFKEKLHKAKVTHAEFNPRCD-WLMATSSVDATVKLWDLRNIKDKNSYIAEMP-H---------------------EK 251 (383)
T ss_dssp CEEEEEECSSSCEEEEEECSSCT-TEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-C---------------------SS
T ss_pred CEEEEeccCCCcEEEEEECCCCC-CEEEEEeCCCEEEEEeCCCCCcccceEEEec-C---------------------CC
Confidence 56677888999999999999985 4899999999999999876432211111111 1 11
Q ss_pred CceeEEEcC-CCCeEEEecCCCeEEEEecCCCcEEEEeecCC-----------------cceEEEEEcCCCcEEEEecCC
Q 023643 161 ENNAIAVDP-QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHS-----------------DYLHCIVARNSTNQIVTGSED 222 (279)
Q Consensus 161 ~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----------------~~i~~i~~~~~~~~l~~~~~d 222 (279)
.|.+++|+| ++.+|++++.|+.|++||+++++....+..|. ..+..++|+|++++ +++.|
T Consensus 252 ~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d 329 (383)
T 3ei3_B 252 PVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDK 329 (383)
T ss_dssp CEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCC
T ss_pred ceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCC
Confidence 379999999 99999999999999999999887777666543 34455677777766 78899
Q ss_pred CeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 223 GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 223 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+.|++||+.+++.+..+.. ..|...+..++|+|++++|++|+ |+.|++||
T Consensus 330 ~~i~iwd~~~~~~~~~l~~------~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~ 379 (383)
T 3ei3_B 330 RTIDIYDANSGGLVHQLRD------PNAAGIISLNKFSPTGDVLASGM-GFNILIWN 379 (383)
T ss_dssp CCEEEEETTTCCEEEEECB------TTBCSCCCEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred CeEEEEecCCCceeeeecC------CCCCceEEEEEEecCccEEEEec-CCcEEEEe
Confidence 9999999999999998843 23567788889999999999997 99999996
No 64
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-36 Score=241.39 Aligned_cols=236 Identities=14% Similarity=0.189 Sum_probs=192.9
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcc-------
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSK------- 73 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~------- 73 (279)
.||.|++||.++ ..+..+..|...|.+++|+| ++++|++++.||.|++||+.+......+......
T Consensus 128 ~dg~i~i~~~~~---~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 200 (425)
T 1r5m_A 128 ENGELRLWNKTG---ALLNVLNFHRAPIVSVKWNK----DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE 200 (425)
T ss_dssp TTSCEEEEETTS---CEEEEECCCCSCEEEEEECT----TSSEEEEEETTCCEEEEETTTTEEEEEECCC----------
T ss_pred CCCeEEEEeCCC---CeeeeccCCCccEEEEEECC----CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec
Confidence 379999999544 45667788999999999999 8999999999999999999876543322221111
Q ss_pred ----------------cce-----------ee---eccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCC
Q 023643 74 ----------------VQQ-----------LL---GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKE 123 (279)
Q Consensus 74 ----------------~~~-----------~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 123 (279)
... ++ ..+++..+..|..+|.+++|+|+++ +|++++.|+.|++||++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~i~d~~~ 278 (425)
T 1r5m_A 201 NHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK--LLLSASDDGTLRIWHGGN 278 (425)
T ss_dssp -----CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT--EEEEEETTSCEEEECSSS
T ss_pred cccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC--EEEEEcCCCEEEEEECCC
Confidence 000 00 0345556778999999999999998 999999999999999875
Q ss_pred CccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcc
Q 023643 124 FTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDY 203 (279)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 203 (279)
.. ....+..+ ...|.+++|+|++ .+++++.|+.|++||+++++.+..+..|...
T Consensus 279 ~~---~~~~~~~~----------------------~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 332 (425)
T 1r5m_A 279 GN---SQNCFYGH----------------------SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVP 332 (425)
T ss_dssp BS---CSEEECCC----------------------SSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCC
T ss_pred Cc---cceEecCC----------------------CccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCcc
Confidence 32 11222211 1237899999999 9999999999999999999999999999999
Q ss_pred eEEEEEcCCCcEEEEecCCCeEEEEeCCCCc--------------------eEEEecCCccccccCcce--eeeEEEEcC
Q 023643 204 LHCIVARNSTNQIVTGSEDGTARIWDCKSGK--------------------CIKVIDPVKDKQLKGVIS--CVSCITLDA 261 (279)
Q Consensus 204 i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~--------------------~~~~~~~~~~~~~~~~~~--~v~~~~~~~ 261 (279)
|.+++|+|++++|++++.||.|++||+++++ .+..+ ..|.. .|++++|+|
T Consensus 333 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~s~ 404 (425)
T 1r5m_A 333 IFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY--------QSSQDNDYIFDLSWNC 404 (425)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEE--------CCTTCCCCEEEEEECT
T ss_pred EEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhh--------cCcccCCceEEEEccC
Confidence 9999999999999999999999999999887 67776 67755 999999999
Q ss_pred CCCEEEEEcCcceEEeCC
Q 023643 262 SESWLVRVRATNYVILFS 279 (279)
Q Consensus 262 ~~~~l~~~~~d~~i~~wd 279 (279)
++++|++++.||.|++||
T Consensus 405 ~~~~l~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 405 AGNKISVAYSLQEGSVVA 422 (425)
T ss_dssp TSSEEEEEESSSCCEEEE
T ss_pred CCceEEEEecCceEEEEe
Confidence 999999999999999996
No 65
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-37 Score=246.19 Aligned_cols=236 Identities=11% Similarity=0.142 Sum_probs=189.3
Q ss_pred CCCceeeecccccc--ccceeeeeecccceEEEEECCCCCCC-CCEEEEecCCCcEEEEeCCCCCcccccccCCccccee
Q 023643 1 MCGDSTNWDEDAYR--KSILKEREILTRTVFRTVWGPSKDGS-PDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQL 77 (279)
Q Consensus 1 ~dG~v~iw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 77 (279)
.||.|++||+.... ...+..+..|...|.+++|+| + +.+|++++.||.|++||+.+........ .
T Consensus 87 ~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-------~- 154 (416)
T 2pm9_A 87 DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNA----KQDNVLASGGNNGEIFIWDMNKCTESPSNY-------T- 154 (416)
T ss_dssp SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECS----SSTTBEEEECSSSCEEBCBTTTTSSCTTTC-------C-
T ss_pred cCCeEEEeecccccccccchhhccCCccceEEEEEcC----CCCCEEEEEcCCCeEEEEECCCCccccccc-------c-
Confidence 38999999987721 235667888999999999999 6 8999999999999999998743110000 0
Q ss_pred eeccccccccCCccCeEEEEecCC-CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643 78 LGIEPDGFLHGHDGPAYDVKFYGG-NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL 156 (279)
Q Consensus 78 ~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (279)
......+..|...|.+++|+|+ +. +|++++.||.|++||++.. .....+..+.. ..
T Consensus 155 --~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~----------------~~ 211 (416)
T 2pm9_A 155 --PLTPGQSMSSVDEVISLAWNQSLAH--VFASAGSSNFASIWDLKAK---KEVIHLSYTSP----------------NS 211 (416)
T ss_dssp --CBCCCCSCCSSCCCCEEEECSSCTT--EEEEESSSSCEEEEETTTT---EEEEEECCCCC----------------SS
T ss_pred --ccccccccCCCCCeeEEEeCCCCCc--EEEEEcCCCCEEEEECCCC---CcceEEecccc----------------cc
Confidence 1112334679999999999999 55 9999999999999998753 22222221100 00
Q ss_pred CCCCCceeEEEcCCC-CeEEEecCCC---eEEEEecCCC-cEEEEee-cCCcceEEEEEcC-CCcEEEEecCCCeEEEEe
Q 023643 157 SPVPENNAIAVDPQG-GAIFSAAGDS---CAYCWDVESS-RIKMVFK-GHSDYLHCIVARN-STNQIVTGSEDGTARIWD 229 (279)
Q Consensus 157 ~~~~~i~~~~~~~~~-~~l~~~~~d~---~i~i~d~~~~-~~~~~~~-~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd 229 (279)
.+...|.+++|+|++ .++++++.|+ .|++||++++ +++..+. +|...|.+++|+| ++++|++++.|+.|++||
T Consensus 212 ~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd 291 (416)
T 2pm9_A 212 GIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291 (416)
T ss_dssp CCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEEC
T ss_pred ccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEee
Confidence 112248999999997 5899999998 9999999986 6777888 8999999999999 899999999999999999
Q ss_pred CCCCceEEEecCCccccccCcceeeeEEEEcCCC-CEEEEEcCcceEEeCC
Q 023643 230 CKSGKCIKVIDPVKDKQLKGVISCVSCITLDASE-SWLVRVRATNYVILFS 279 (279)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd 279 (279)
+++++.+..+ ..|...|.+++|+|++ .+|++++.|+.|++||
T Consensus 292 ~~~~~~~~~~--------~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~ 334 (416)
T 2pm9_A 292 PESAEQLSQF--------PARGNWCFKTKFAPEAPDLFACASFDNKIEVQT 334 (416)
T ss_dssp SSSCCEEEEE--------ECSSSCCCCEEECTTCTTEEEECCSSSEEEEEE
T ss_pred CCCCccceee--------cCCCCceEEEEECCCCCCEEEEEecCCcEEEEE
Confidence 9999999988 6788899999999998 8999999999999996
No 66
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.5e-36 Score=255.05 Aligned_cols=230 Identities=17% Similarity=0.208 Sum_probs=182.8
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||+|++||+.... .+..+.+|...|.+++|+| ++++|++|+.|++|++||...... .
T Consensus 450 ~Dg~v~vwd~~~~~--~~~~~~~h~~~v~~~~~s~----~~~~l~s~s~D~~i~iwd~~~~~~----------------~ 507 (694)
T 3dm0_A 450 WDGELRLWDLAAGV--STRRFVGHTKDVLSVAFSL----DNRQIVSASRDRTIKLWNTLGECK----------------Y 507 (694)
T ss_dssp TTSEEEEEETTTTE--EEEEEECCSSCEEEEEECT----TSSCEEEEETTSCEEEECTTSCEE----------------E
T ss_pred CCCcEEEEECCCCc--ceeEEeCCCCCEEEEEEeC----CCCEEEEEeCCCEEEEEECCCCcc----------------e
Confidence 48999999988763 4677889999999999999 899999999999999999864210 1
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
.......+|...|.+++|+|++....|++++.|++|++||++.. .....+.++ ..
T Consensus 508 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~---~~~~~~~~h----------------------~~ 562 (694)
T 3dm0_A 508 TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC---KLRSTLAGH----------------------TG 562 (694)
T ss_dssp EECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC---CEEEEECCC----------------------SS
T ss_pred eeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC---cEEEEEcCC----------------------CC
Confidence 11223357999999999999874348999999999999998643 222222222 12
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
.|++++|+|++++|++++.|+.|++||+++++.+..+. +...|.+++|+|++.++++++ ++.|++||+++++.+..+.
T Consensus 563 ~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~ 640 (694)
T 3dm0_A 563 YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLK 640 (694)
T ss_dssp CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEC
T ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhc
Confidence 37999999999999999999999999999999988876 456799999999998888765 5669999999999888775
Q ss_pred CCccc-----------cccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 241 PVKDK-----------QLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 241 ~~~~~-----------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+... ....+...+++++|+|+|++|++|+.||.|++||
T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~ 690 (694)
T 3dm0_A 641 VDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWG 690 (694)
T ss_dssp CCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEe
Confidence 43210 0011223478999999999999999999999996
No 67
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2e-35 Score=230.47 Aligned_cols=220 Identities=14% Similarity=0.244 Sum_probs=184.5
Q ss_pred CCceeeeccccccc-cceeeee--ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643 2 CGDSTNWDEDAYRK-SILKERE--ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL 78 (279)
Q Consensus 2 dG~v~iw~~~~~~~-~~~~~~~--~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 78 (279)
||.|++||++.... ..+..+. .|...|.+++|+| ++++|++++.||.|++||+.+..
T Consensus 71 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~~~d~~~~~---------------- 130 (337)
T 1gxr_A 71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP----DGCTLIVGGEASTLSIWDLAAPT---------------- 130 (337)
T ss_dssp BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT----TSSEEEEEESSSEEEEEECCCC-----------------
T ss_pred CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC----CCCEEEEEcCCCcEEEEECCCCC----------------
Confidence 78999999876532 2233333 6889999999999 89999999999999999998732
Q ss_pred eccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643 79 GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP 158 (279)
Q Consensus 79 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (279)
......+..|...|.+++|+|+++ +|++++.||.|++||+++. .....+..+
T Consensus 131 -~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~v~~~d~~~~---~~~~~~~~~---------------------- 182 (337)
T 1gxr_A 131 -PRIKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQ---TLVRQFQGH---------------------- 182 (337)
T ss_dssp --EEEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTT---EEEEEECCC----------------------
T ss_pred -cceeeecccCCCceEEEEECCCCC--EEEEEeCCCcEEEEeCCCC---ceeeeeecc----------------------
Confidence 124456778999999999999998 9999999999999998643 222222221
Q ss_pred CCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE
Q 023643 159 VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV 238 (279)
Q Consensus 159 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 238 (279)
...+.+++|+|++++|++++.|+.|++||+++++.+..+. +...+.+++|+|++++|++++.|+.|++||+++++.. .
T Consensus 183 ~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~ 260 (337)
T 1gxr_A 183 TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-Q 260 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-E
T ss_pred cCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-E
Confidence 1237899999999999999999999999999999888876 7888999999999999999999999999999987754 3
Q ss_pred ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+ ..|...|.+++|+|++++|++++.||.|++||
T Consensus 261 ~--------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 261 L--------HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp E--------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred E--------cCCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 4 57888999999999999999999999999996
No 68
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-36 Score=259.62 Aligned_cols=230 Identities=16% Similarity=0.199 Sum_probs=188.7
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCC--CCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGS--PDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL 78 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 78 (279)
.||.|++||+.+.....+..+.+|..+|++++|+| + +++|++|+.||.|++||+.++.
T Consensus 29 ~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~----~~~~~~l~s~s~Dg~I~vwd~~~~~---------------- 88 (753)
T 3jro_A 29 SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH----PKFGTILASCSYDGKVLIWKEENGR---------------- 88 (753)
T ss_dssp TTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC----TTSCSEEEEEETTSCEEEEEEETTE----------------
T ss_pred CCCcEEEEecCCCCCccceeccCCcCceEEEEecC----CCCCCEEEEEeCCCeEEEEECCCCc----------------
Confidence 48999999988555466778889999999999998 6 8999999999999999998731
Q ss_pred eccccccccCCccCeEEEEecCC--CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643 79 GIEPDGFLHGHDGPAYDVKFYGG--NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL 156 (279)
Q Consensus 79 ~~~~~~~~~~h~~~v~~~~~~~~--~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (279)
...+..+.+|..+|.+++|+|+ +. ++++++.||.|++||++...... .....++
T Consensus 89 -~~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~-~~~~~~~-------------------- 144 (753)
T 3jro_A 89 -WSQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTS-PIIIDAH-------------------- 144 (753)
T ss_dssp -EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCC-CEEEECC--------------------
T ss_pred -ccccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcc-eeEeecC--------------------
Confidence 1255677789999999999999 77 99999999999999987542211 1111111
Q ss_pred CCCCCceeEEEcC-------------CCCeEEEecCCCeEEEEecCCC----cEEEEeecCCcceEEEEEcCC---CcEE
Q 023643 157 SPVPENNAIAVDP-------------QGGAIFSAAGDSCAYCWDVESS----RIKMVFKGHSDYLHCIVARNS---TNQI 216 (279)
Q Consensus 157 ~~~~~i~~~~~~~-------------~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~i~~i~~~~~---~~~l 216 (279)
...|.+++|+| ++..+++|+.||.|++||++++ .+...+.+|...|++++|+|+ +++|
T Consensus 145 --~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l 222 (753)
T 3jro_A 145 --AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL 222 (753)
T ss_dssp --SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred --CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEE
Confidence 12378999999 5889999999999999999876 566778899999999999999 9999
Q ss_pred EEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 217 VTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 217 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
++++.||.|++||+++++....... .....|...|++++|+|++++|++|+.||.|++||
T Consensus 223 ~s~s~Dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 223 ASVSQDRTCIIWTQDNEQGPWKKTL---LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (753)
T ss_dssp EEEESSSCEEEEEESSSSSCCBCCB---SSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred EEEecCCEEEEecCCCCCCcceeEE---eccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence 9999999999999988642211110 01146788999999999999999999999999996
No 69
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-35 Score=227.32 Aligned_cols=236 Identities=19% Similarity=0.257 Sum_probs=187.2
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.|++||+++. .....+..|...|.+++|+| ++.+|++++.||.|++|++..... .
T Consensus 37 ~dg~v~vw~~~~~--~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~~~~~~~~~~----------------~ 94 (313)
T 3odt_A 37 RDGTVRLWSKDDQ--WLGTVVYTGQGFLNSVCYDS----EKELLLFGGKDTMINGVPLFATSG----------------E 94 (313)
T ss_dssp TTSEEEEEEESSS--EEEEEEEECSSCEEEEEEET----TTTEEEEEETTSCEEEEETTCCTT----------------S
T ss_pred cCCcEEEEECCCC--EEEEEeecCCccEEEEEECC----CCCEEEEecCCCeEEEEEeeecCC----------------C
Confidence 4899999998775 34667788999999999999 899999999999999999976321 3
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEee-------------cC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLV-------------NH 147 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~ 147 (279)
+++..+.+|...|.+++|. +. +|++++.||.|++||... ....+.. +..++..+. ..
T Consensus 95 ~~~~~~~~~~~~i~~~~~~--~~--~l~~~~~d~~i~~~d~~~-----~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d 164 (313)
T 3odt_A 95 DPLYTLIGHQGNVCSLSFQ--DG--VVISGSWDKTAKVWKEGS-----LVYNLQA-HNASVWDAKVVSFSENKFLTASAD 164 (313)
T ss_dssp CC-CEECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTE-----EEEEEEC-CSSCEEEEEEEETTTTEEEEEETT
T ss_pred CcccchhhcccCEEEEEec--CC--EEEEEeCCCCEEEEcCCc-----EEEeccc-CCCceeEEEEccCCCCEEEEEECC
Confidence 5566778899999999993 44 999999999999999321 1111111 111111110 00
Q ss_pred CCCCccc--------cCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEe
Q 023643 148 QHKGPWG--------ALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTG 219 (279)
Q Consensus 148 ~~~~~~~--------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 219 (279)
..-..|+ ...+...+.+++|+|++. +++++.|+.|++||+++++++..+..|...|.+++|+|++ .|+++
T Consensus 165 ~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~ 242 (313)
T 3odt_A 165 KTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSC 242 (313)
T ss_dssp SCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEE
T ss_pred CCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEE
Confidence 0000110 112556799999999988 9999999999999999999999999999999999999998 68899
Q ss_pred cCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 220 SEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 220 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+.||.|++||+++++.+..+ ..|...|.+++|+|+++ +++++.||.|++||
T Consensus 243 ~~dg~v~iwd~~~~~~~~~~--------~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 243 GEDRTVRIWSKENGSLKQVI--------TLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS 293 (313)
T ss_dssp ETTSEEEEECTTTCCEEEEE--------ECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred ecCCEEEEEECCCCceeEEE--------eccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence 99999999999999999988 67778999999999998 66789999999996
No 70
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.6e-37 Score=244.32 Aligned_cols=214 Identities=10% Similarity=0.072 Sum_probs=165.0
Q ss_pred eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEec
Q 023643 20 EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFY 99 (279)
Q Consensus 20 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 99 (279)
.+..+.++|++++|+| ++++||+|+.||.|++|++.+.. .+.+..+.+|.++|.+++|+
T Consensus 6 ~~~~~~~~v~~~~~s~----~g~~l~~~~~d~~i~iw~~~~~~-----------------~~~~~~~~~h~~~v~~~~~s 64 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNS----QRTEFVTTTATNQVELYEQDGNG-----------------WKHARTFSDHDKIVTCVDWA 64 (377)
T ss_dssp EEEECSSCCSCCEECS----SSSEEECCCSSSCBCEEEEETTE-----------------EEECCCBCCCSSCEEEEEEC
T ss_pred eEecCCCcEEEEEECC----CCCEEEEecCCCEEEEEEccCCc-----------------eEEEEEEecCCceEEEEEEe
Confidence 3455678999999999 99999999999999999998721 16678888999999999999
Q ss_pred CCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC
Q 023643 100 GGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG 179 (279)
Q Consensus 100 ~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 179 (279)
|+++ +|++++.|+.|++||++..........+.+ +...|.+++|+|++++|++++.
T Consensus 65 ~~~~--~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~----------------------~~~~v~~~~~~~~~~~l~~~~~ 120 (377)
T 3dwl_C 65 PKSN--RIVTCSQDRNAYVYEKRPDGTWKQTLVLLR----------------------LNRAATFVRWSPNEDKFAVGSG 120 (377)
T ss_dssp TTTC--CEEEEETTSSEEEC------CCCCEEECCC----------------------CSSCEEEEECCTTSSCCEEEES
T ss_pred CCCC--EEEEEeCCCeEEEEEcCCCCceeeeeEecc----------------------cCCceEEEEECCCCCEEEEEec
Confidence 9998 999999999999999875431112222222 1224799999999999999999
Q ss_pred CCeEEEEecCCCc---EEEEeec-CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC----------Cccc
Q 023643 180 DSCAYCWDVESSR---IKMVFKG-HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP----------VKDK 245 (279)
Q Consensus 180 d~~i~i~d~~~~~---~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~----------~~~~ 245 (279)
|+.|++||+++++ ....+.. |...|.+++|+|++++|++++.|+.|++||++..+....... ....
T Consensus 121 d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (377)
T 3dwl_C 121 ARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCA 200 (377)
T ss_dssp SSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEE
T ss_pred CCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhh
Confidence 9999999999876 4677777 999999999999999999999999999999864321110000 0001
Q ss_pred cccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 246 QLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 246 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+ +|...|.+++|+|++++|++++.||.|++||
T Consensus 201 ~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd 233 (377)
T 3dwl_C 201 EY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAY 233 (377)
T ss_dssp CC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CE
T ss_pred cc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 12 7888999999999999999999999999996
No 71
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-35 Score=237.59 Aligned_cols=216 Identities=18% Similarity=0.225 Sum_probs=181.8
Q ss_pred CCceeeeccccccccceeeeee-cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 2 CGDSTNWDEDAYRKSILKEREI-LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
||.|++||+++... ...... |...|.+++|+| ++++|++|+.||.|++||+.+ +
T Consensus 112 d~~v~lw~~~~~~~--~~~~~~~~~~~v~~v~~s~----~~~~l~~~~~dg~i~iwd~~~-------------------~ 166 (401)
T 4aez_A 112 ERNVYVWNADSGSV--SALAETDESTYVASVKWSH----DGSFLSVGLGNGLVDIYDVES-------------------Q 166 (401)
T ss_dssp TTEEEEEETTTCCE--EEEEECCTTCCEEEEEECT----TSSEEEEEETTSCEEEEETTT-------------------C
T ss_pred CCeEEEeeCCCCcE--eEeeecCCCCCEEEEEECC----CCCEEEEECCCCeEEEEECcC-------------------C
Confidence 79999999988754 333333 789999999999 899999999999999999988 5
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
+.+..+.+|...|.+++|.+ . +|++++.||.|++||++... .....+.++ ..
T Consensus 167 ~~~~~~~~~~~~v~~~~~~~--~--~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~----------------------~~ 218 (401)
T 4aez_A 167 TKLRTMAGHQARVGCLSWNR--H--VLSSGSRSGAIHHHDVRIAN--HQIGTLQGH----------------------SS 218 (401)
T ss_dssp CEEEEECCCSSCEEEEEEET--T--EEEEEETTSEEEEEETTSSS--CEEEEEECC----------------------SS
T ss_pred eEEEEecCCCCceEEEEECC--C--EEEEEcCCCCEEEEecccCc--ceeeEEcCC----------------------CC
Confidence 66777889999999999954 4 99999999999999986421 112222221 12
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCC-cEEEEec--CCCeEEEEeCCCCceEE
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNST-NQIVTGS--EDGTARIWDCKSGKCIK 237 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~--~d~~i~vwd~~~~~~~~ 237 (279)
.|.+++|+|++.+|++++.|+.|++||+++++++..+..|...|.+++|+|++ .++++++ .|+.|++||+++++.+.
T Consensus 219 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~ 298 (401)
T 4aez_A 219 EVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN 298 (401)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE
T ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE
Confidence 47999999999999999999999999999999999999999999999999975 5666655 79999999999999988
Q ss_pred EecCCccccccCcceeeeEEEEcCCCCEEEE--EcCcceEEeCC
Q 023643 238 VIDPVKDKQLKGVISCVSCITLDASESWLVR--VRATNYVILFS 279 (279)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~d~~i~~wd 279 (279)
.+. +...|.+++|+|++++|++ |+.||.|++||
T Consensus 299 ~~~---------~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~ 333 (401)
T 4aez_A 299 TVD---------AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWS 333 (401)
T ss_dssp EEE---------CSSCEEEEEECSSSSEEEEEECTTTCEEEEEE
T ss_pred EEe---------CCCcEEEEEECCCCCeEEEEeecCCCcEEEEe
Confidence 873 4467999999999999999 45899999996
No 72
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.4e-35 Score=233.26 Aligned_cols=246 Identities=11% Similarity=0.033 Sum_probs=184.5
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.|++||++............|...|.+++|+| ++++|++++.||.|++||+...... .
T Consensus 72 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~v~i~d~~~~~~~---------------~ 132 (372)
T 1k8k_C 72 TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP----NEKKFAVGSGSRVISICYFEQENDW---------------W 132 (372)
T ss_dssp TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT----TSSEEEEEETTSSEEEEEEETTTTE---------------E
T ss_pred CCCeEEEEECCCCeeeeeEEeecCCCceeEEEECC----CCCEEEEEeCCCEEEEEEecCCCcc---------------e
Confidence 48999999998765433444567899999999999 8999999999999999999874210 0
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeee-c---cCcccceEEeecCCCCCccccC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINL-Q---GNHVKPVLDLVNHQHKGPWGAL 156 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~ 156 (279)
.......+|...|.+++|+|++. +|++++.||.|++||++........... . ......+..+ .
T Consensus 133 ~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 199 (372)
T 1k8k_C 133 VCKHIKKPIRSTVLSLDWHPNSV--LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES-----------S 199 (372)
T ss_dssp EEEEECTTCCSCEEEEEECTTSS--EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC-----------C
T ss_pred eeeeeecccCCCeeEEEEcCCCC--EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec-----------C
Confidence 01223356899999999999998 9999999999999997532111000000 0 0000111111 1
Q ss_pred CCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC--Cc
Q 023643 157 SPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS--GK 234 (279)
Q Consensus 157 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~--~~ 234 (279)
.+...|.+++|+|++++|++++.|+.|++||+++++++..+..|...|.+++|+|++.+++++ .|+.|++|+++. ++
T Consensus 200 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~ 278 (372)
T 1k8k_C 200 SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGK 278 (372)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTE
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCce
Confidence 223358999999999999999999999999999999999999999999999999999988888 899999999987 53
Q ss_pred e--EEEecC----------------------Ccc------ccc-cCcceeeeEEEEc-CCC---CEEEEEcCcceEEeCC
Q 023643 235 C--IKVIDP----------------------VKD------KQL-KGVISCVSCITLD-ASE---SWLVRVRATNYVILFS 279 (279)
Q Consensus 235 ~--~~~~~~----------------------~~~------~~~-~~~~~~v~~~~~~-~~~---~~l~~~~~d~~i~~wd 279 (279)
. +..+.. ... ..+ .+|...|++++|. ++| .+|++|+.||.|++||
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 279 LSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp EEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred EEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 1 111100 000 112 4899999999966 666 9999999999999996
No 73
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=5.9e-36 Score=236.18 Aligned_cols=240 Identities=14% Similarity=0.167 Sum_probs=182.7
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.|++||++.........+..|...|.+++|+| ++++|++++.||.|++||+.+.
T Consensus 62 ~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~s~~~dg~v~iwd~~~~------------------- 118 (368)
T 3mmy_A 62 WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD----DGSKVFTASCDKTAKMWDLSSN------------------- 118 (368)
T ss_dssp TTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT----TSSEEEEEETTSEEEEEETTTT-------------------
T ss_pred CCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc----CCCEEEEEcCCCcEEEEEcCCC-------------------
Confidence 48999999988643344467888999999999999 8999999999999999999973
Q ss_pred cccccccCCccCeEEEEe--cCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCc-------------------cc
Q 023643 81 EPDGFLHGHDGPAYDVKF--YGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNH-------------------VK 139 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~--~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-------------------~~ 139 (279)
+.+. +..|..+|.+++| +|++. +|++++.||.|++||+++.... ..+..+. ..
T Consensus 119 ~~~~-~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i 192 (368)
T 3mmy_A 119 QAIQ-IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSNPM---MVLQLPERCYCADVIYPMAVVATAERGL 192 (368)
T ss_dssp EEEE-EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSSCS---EEEECSSCEEEEEEETTEEEEEEGGGCE
T ss_pred Ccee-eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCcEE---EEEecCCCceEEEecCCeeEEEeCCCcE
Confidence 3333 4569999999999 77776 9999999999999998764322 1111111 00
Q ss_pred ceEEeecCCCCCccccCCCCCCceeEEEcCCCCe----EEEecCCCeEEEEecCCC---cEEEEeecCCc----------
Q 023643 140 PVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGA----IFSAAGDSCAYCWDVESS---RIKMVFKGHSD---------- 202 (279)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~---------- 202 (279)
.++++.................+.++.+.++... +++++.|+.|++||++.. +.+..+..|..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (368)
T 3mmy_A 193 IVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQD 272 (368)
T ss_dssp EEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEE
T ss_pred EEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccccccc
Confidence 1111111100000001111233566666655554 999999999999999987 56777777776
Q ss_pred --ceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643 203 --YLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL 277 (279)
Q Consensus 203 --~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 277 (279)
.|.+++|+|++++|++++.||.|++||+++++++..+ ..|...|++++|+|++++|++++.|+..+.
T Consensus 273 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~--------~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~ 341 (368)
T 3mmy_A 273 IYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS--------EQLDQPISACCFNHNGNIFAYASSYDWSKG 341 (368)
T ss_dssp ECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC--------CCCSSCEEEEEECTTSSCEEEEECCCSTTC
T ss_pred ccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe--------cCCCCCceEEEECCCCCeEEEEeccccccc
Confidence 7999999999999999999999999999999999888 688889999999999999999998875433
No 74
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1e-35 Score=236.47 Aligned_cols=206 Identities=15% Similarity=0.165 Sum_probs=173.1
Q ss_pred cceeeeeecccceEEEEECCCCCCCC-CEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccc--cCCccC
Q 023643 16 SILKEREILTRTVFRTVWGPSKDGSP-DTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFL--HGHDGP 92 (279)
Q Consensus 16 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~ 92 (279)
.....+.+|...|.+++|+| ++ ++|++|+.||.|++||+.+. +....+ .+|...
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~-------------------~~~~~~~~~~h~~~ 120 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHP----THPTTVAVGSKGGDIILWDYDVQ-------------------NKTSFIQGMGPGDA 120 (383)
T ss_dssp EEEEEECCCSSCEEEEEECS----SCTTEEEEEEBTSCEEEEETTST-------------------TCEEEECCCSTTCB
T ss_pred ceEEeccCCCCCEEEEEECC----CCCCEEEEEcCCCeEEEEeCCCc-------------------ccceeeecCCcCCc
Confidence 34567788999999999999 77 99999999999999999973 333333 469999
Q ss_pred eEEEEecC-CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC
Q 023643 93 AYDVKFYG-GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG 171 (279)
Q Consensus 93 v~~~~~~~-~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 171 (279)
|.+++|+| ++. +|++++.|+.|++||++. .....+.... .+...|.+++|+|++
T Consensus 121 v~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~----~~~~~~~~~~-------------------~~~~~v~~~~~~~~~ 175 (383)
T 3ei3_B 121 ITGMKFNQFNTN--QLFVSSIRGATTLRDFSG----SVIQVFAKTD-------------------SWDYWYCCVDVSVSR 175 (383)
T ss_dssp EEEEEEETTEEE--EEEEEETTTEEEEEETTS----CEEEEEECCC-------------------CSSCCEEEEEEETTT
T ss_pred eeEEEeCCCCCC--EEEEEeCCCEEEEEECCC----CceEEEeccC-------------------CCCCCeEEEEECCCC
Confidence 99999999 555 999999999999999863 1222221111 011247999999999
Q ss_pred CeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCc-EEEEecCCCeEEEEeCCC----CceEEEecCCcccc
Q 023643 172 GAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTN-QIVTGSEDGTARIWDCKS----GKCIKVIDPVKDKQ 246 (279)
Q Consensus 172 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~----~~~~~~~~~~~~~~ 246 (279)
++|++++.|+.|++||+ +++++..+..|...|.+++|+|+++ +|++++.|+.|++||+++ ++.+..+
T Consensus 176 ~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------- 247 (383)
T 3ei3_B 176 QMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM------- 247 (383)
T ss_dssp TEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-------
T ss_pred CEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-------
Confidence 99999999999999999 5888899999999999999999998 999999999999999998 5555554
Q ss_pred ccCcceeeeEEEEcC-CCCEEEEEcCcceEEeCC
Q 023643 247 LKGVISCVSCITLDA-SESWLVRVRATNYVILFS 279 (279)
Q Consensus 247 ~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd 279 (279)
+|...|.+++|+| ++.+|++++.|+.|++||
T Consensus 248 --~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd 279 (383)
T 3ei3_B 248 --PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYS 279 (383)
T ss_dssp --ECSSCEEEEEECTTTSCEEEEEESSSEEEEEE
T ss_pred --cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEE
Confidence 5778999999999 999999999999999996
No 75
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.4e-35 Score=235.72 Aligned_cols=219 Identities=15% Similarity=0.181 Sum_probs=182.9
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.|++||++... .+..+..|...|.+++|++ ++|++|+.||.|++||+... .
T Consensus 154 ~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~------~~l~~~~~dg~i~i~d~~~~------------------~ 207 (401)
T 4aez_A 154 GNGLVDIYDVESQT--KLRTMAGHQARVGCLSWNR------HVLSSGSRSGAIHHHDVRIA------------------N 207 (401)
T ss_dssp TTSCEEEEETTTCC--EEEEECCCSSCEEEEEEET------TEEEEEETTSEEEEEETTSS------------------S
T ss_pred CCCeEEEEECcCCe--EEEEecCCCCceEEEEECC------CEEEEEcCCCCEEEEecccC------------------c
Confidence 48999999988763 4677889999999999965 69999999999999999853 4
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
.....+.+|.+.|.+++|+|++. +|++++.|+.|++||++.. .....+..+ ..
T Consensus 208 ~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~v~iwd~~~~---~~~~~~~~~----------------------~~ 260 (401)
T 4aez_A 208 HQIGTLQGHSSEVCGLAWRSDGL--QLASGGNDNVVQIWDARSS---IPKFTKTNH----------------------NA 260 (401)
T ss_dssp CEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTCS---SEEEEECCC----------------------SS
T ss_pred ceeeEEcCCCCCeeEEEEcCCCC--EEEEEeCCCeEEEccCCCC---CccEEecCC----------------------cc
Confidence 55667788999999999999988 9999999999999998642 222222211 12
Q ss_pred CceeEEEcCCCC-eEEEec--CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEE--ecCCCeEEEEeCCCCce
Q 023643 161 ENNAIAVDPQGG-AIFSAA--GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVT--GSEDGTARIWDCKSGKC 235 (279)
Q Consensus 161 ~i~~~~~~~~~~-~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~--~~~d~~i~vwd~~~~~~ 235 (279)
.|.+++|+|++. ++++++ .|+.|++||+++++++..+. +...|.+++|+|+++++++ |+.||.|++||+.+++.
T Consensus 261 ~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~ 339 (401)
T 4aez_A 261 AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL 339 (401)
T ss_dssp CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE
T ss_pred eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc
Confidence 479999999776 455544 79999999999999999887 6678999999999999999 55899999999998766
Q ss_pred EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 236 IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
..... +.+|...|.+++|+|++++|++++.||.|++||
T Consensus 340 ~~~~~------~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~ 377 (401)
T 4aez_A 340 TKQVD------IPAHDTRVLYSALSPDGRILSTAASDENLKFWR 377 (401)
T ss_dssp EEEEE------EECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred eeEEE------ecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 65542 168889999999999999999999999999996
No 76
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=7.8e-37 Score=241.13 Aligned_cols=223 Identities=16% Similarity=0.210 Sum_probs=179.6
Q ss_pred CCceeeeccccccccceeeeee-----cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccce
Q 023643 2 CGDSTNWDEDAYRKSILKEREI-----LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQ 76 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 76 (279)
+|.|++||.+.... +..+.. |...|.+++|+|....++.+|++|+.||.|++||+.+
T Consensus 43 ~~~v~vw~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~---------------- 104 (366)
T 3k26_A 43 SNRVTLYECHSQGE--IRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT---------------- 104 (366)
T ss_dssp TTEEEEEEECGGGC--EEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT----------------
T ss_pred CCEEEEEEcCCCcE--EEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh----------------
Confidence 67899999886542 333332 5678999999993222267999999999999999998
Q ss_pred eeeccccccccCCccCeEEEEecC-CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcccc
Q 023643 77 LLGIEPDGFLHGHDGPAYDVKFYG-GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGA 155 (279)
Q Consensus 77 ~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (279)
++.+..+.+|..+|.+++|+| ++. +|++++.||.|++||+++.. ....+.. .
T Consensus 105 ---~~~~~~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~---~~~~~~~-------------------~ 157 (366)
T 3k26_A 105 ---MQCIKHYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDT---LVAIFGG-------------------V 157 (366)
T ss_dssp ---CCEEEEEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTE---EEEEECS-------------------T
T ss_pred ---ceEeeeecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCe---EEEEecc-------------------c
Confidence 566777889999999999999 777 99999999999999986532 2222210 0
Q ss_pred CCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee----------------------------cCCcceEEE
Q 023643 156 LSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK----------------------------GHSDYLHCI 207 (279)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----------------------------~~~~~i~~i 207 (279)
..+...|.+++|+|++.+|++++.|+.|++||+++++.+..+. .|...|.++
T Consensus 158 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 237 (366)
T 3k26_A 158 EGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 237 (366)
T ss_dssp TSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEE
T ss_pred ccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEE
Confidence 0112248999999999999999999999999999876554433 389999999
Q ss_pred EEcCCCcEEEEecCCCeEEEEeCCCCce--------------EEEecCCccccccCcceeeeEEEEcCC--CCEEEEEcC
Q 023643 208 VARNSTNQIVTGSEDGTARIWDCKSGKC--------------IKVIDPVKDKQLKGVISCVSCITLDAS--ESWLVRVRA 271 (279)
Q Consensus 208 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~--------------~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~ 271 (279)
+|+ +++|++++.|+.|++||+++++. +..+ ..|...|++++|+|+ +++|++|+.
T Consensus 238 ~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 238 RWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF--------DYSQCDIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp EEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEE--------ECSSCCSSCCCCEECTTSSEEEEECT
T ss_pred EEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccc--------cccCCcEEEEEEcCCCCCcEEEEEec
Confidence 998 78999999999999999988654 4444 678889999999999 999999999
Q ss_pred cceEEeCC
Q 023643 272 TNYVILFS 279 (279)
Q Consensus 272 d~~i~~wd 279 (279)
||.|++||
T Consensus 308 dg~i~vwd 315 (366)
T 3k26_A 308 VGKLYVWD 315 (366)
T ss_dssp TSCEEEEE
T ss_pred CCcEEEEE
Confidence 99999996
No 77
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.9e-35 Score=235.42 Aligned_cols=263 Identities=14% Similarity=0.132 Sum_probs=188.2
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
++.+++|+.+... ....+.+|.+.|++++|+|. ++++|++|+.||.|++|++.+......+...... ..
T Consensus 22 ~~~~~v~~~~~~~--~~~~~~~h~~~v~~~~~s~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~------~~ 90 (408)
T 4a11_B 22 ESTRRVLGLELNK--DRDVERIHGGGINTLDIEPV---EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVC------SI 90 (408)
T ss_dssp HHHHHHHTEEECT--TEEECCCCSSCEEEEEECTT---TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEE------EE
T ss_pred cCcceeeccccCc--ceeeeeccCCcEEEEEEecC---CCCEEEEEcCCCeEEEEECCCCcccceEeccccc------cc
Confidence 4568899987764 35667789999999999994 6899999999999999999985433221110000 01
Q ss_pred ccccccCCccCeEEEEecC-CCCceEEEEeeCCCcEEEeecCCCccCccee--------eec-------------cCccc
Q 023643 82 PDGFLHGHDGPAYDVKFYG-GNEDALLLSCGDDGRICGWRWKEFTESKVPI--------NLQ-------------GNHVK 139 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--------~~~-------------~~~~~ 139 (279)
......+|...|.+++|+| ++. +|++++.||.|++||++......... ... .....
T Consensus 91 ~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (408)
T 4a11_B 91 GRDHPDVHRYSVETVQWYPHDTG--MFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKV 168 (408)
T ss_dssp CTTCTTCCSSCEEEEEECTTCTT--CEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSE
T ss_pred cccccccCCCcEEEEEEccCCCc--EEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeE
Confidence 1112246999999999999 555 99999999999999987542211110 000 00011
Q ss_pred ceEEeecCCCCCccccCCCCCCceeEEEcCCCCe-EEEecCCCeEEEEecCCCc-EEEEe---------------ecCCc
Q 023643 140 PVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGA-IFSAAGDSCAYCWDVESSR-IKMVF---------------KGHSD 202 (279)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~-~~~~~---------------~~~~~ 202 (279)
.++++. ..........+...|.+++|+|++.. +++++.|+.|++||++++. ++..+ ..|..
T Consensus 169 ~~~d~~--~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (408)
T 4a11_B 169 QLCDLK--SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNG 246 (408)
T ss_dssp EEEESS--SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSS
T ss_pred EEEeCC--CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccC
Confidence 111111 11111122345678999999999984 8899999999999998765 33333 56889
Q ss_pred ceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCC---------------------------------------c
Q 023643 203 YLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPV---------------------------------------K 243 (279)
Q Consensus 203 ~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~---------------------------------------~ 243 (279)
.|.+++|+|++++|++++.||.|++||+++++....+... .
T Consensus 247 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~ 326 (408)
T 4a11_B 247 KVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ 326 (408)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE
T ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcc
Confidence 9999999999999999999999999999876543322110 0
Q ss_pred cccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 244 DKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 244 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
...+.+|...|++++|+|++++|++|+.||.|++||
T Consensus 327 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 327 ITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWV 362 (408)
T ss_dssp EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred eeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEe
Confidence 123467889999999999999999999999999996
No 78
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.2e-36 Score=244.00 Aligned_cols=246 Identities=13% Similarity=0.184 Sum_probs=179.2
Q ss_pred CCCceeeeccccccc---------cceeeeeecc------------cceEEEEECCCCCCCC--CEEEEecCCCcEEEEe
Q 023643 1 MCGDSTNWDEDAYRK---------SILKEREILT------------RTVFRTVWGPSKDGSP--DTIVIASSDGSITSYS 57 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~---------~~~~~~~~~~------------~~v~~~~~~~~~~~~~--~~l~~~~~dg~i~iw~ 57 (279)
.||.|+|||+..... .....+.+|. ..|.+++|+| ++ .+|++++.||+|++|+
T Consensus 48 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~----~~~~~~l~s~s~d~~i~iw~ 123 (447)
T 3dw8_B 48 KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP----QKNAAQFLLSTNDKTIKLWK 123 (447)
T ss_dssp TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC----CCSSSEEEEEECSSCEEEEE
T ss_pred CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC----CCCcceEEEeCCCCeEEEEe
Confidence 489999999876531 2366778898 8899999999 76 7999999999999999
Q ss_pred CCCCCcccc-cccCCc------------------cc-ceeeecccccc-ccCCccCeEEEEecCCCCceEEEEeeCCCcE
Q 023643 58 IPSCISKLP-LGLSNS------------------KV-QQLLGIEPDGF-LHGHDGPAYDVKFYGGNEDALLLSCGDDGRI 116 (279)
Q Consensus 58 ~~~~~~~~~-~~~~~~------------------~~-~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i 116 (279)
+.+...... +..... .. .......+... ..+|...|.+++|+|+++ +|+++ .|+.|
T Consensus 124 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~-~d~~i 200 (447)
T 3dw8_B 124 ISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYE--TYLSA-DDLRI 200 (447)
T ss_dssp EEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSS--EEEEE-CSSEE
T ss_pred cccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCC--EEEEe-CCCeE
Confidence 976332100 000000 00 00000111223 367999999999999998 99998 79999
Q ss_pred EEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC-CeEEEecCCCeEEEEecCCCcE--
Q 023643 117 CGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG-GAIFSAAGDSCAYCWDVESSRI-- 193 (279)
Q Consensus 117 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~-- 193 (279)
++||++............. .....+...|++++|+|++ .+|++++.|+.|++||+++++.
T Consensus 201 ~iwd~~~~~~~~~~~~~~~-----------------~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 201 NLWHLEITDRSFNIVDIKP-----------------ANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp EEEETTEEEEEEEEEECCC-----------------SSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred EEEECCCCCceeeeeeccc-----------------ccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 9999863211111110000 0111223358999999998 8999999999999999999886
Q ss_pred --EEEeecCCc------------ceEEEEEcCCCcEEEEecCCCeEEEEeCCC-CceEEEecCCccccccCcce------
Q 023643 194 --KMVFKGHSD------------YLHCIVARNSTNQIVTGSEDGTARIWDCKS-GKCIKVIDPVKDKQLKGVIS------ 252 (279)
Q Consensus 194 --~~~~~~~~~------------~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~------ 252 (279)
+..+..|.. .|.+++|+|++++|++++. +.|++||+++ ++++..+. +|..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~--------~~~~~~~~l~ 334 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ--------VHEYLRSKLC 334 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE--------SCGGGTTTHH
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee--------cccccccccc
Confidence 788888876 8999999999999999999 9999999997 88877774 3432
Q ss_pred ---------eeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 253 ---------CVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 253 ---------~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+..++|+|++++|++|+.||.|++||
T Consensus 335 ~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd 370 (447)
T 3dw8_B 335 SLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFD 370 (447)
T ss_dssp HHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEE
T ss_pred ccccccccccceEEEECCCCCEEEEeccCCEEEEEE
Confidence 133489999999999999999999996
No 79
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-35 Score=239.87 Aligned_cols=234 Identities=9% Similarity=0.133 Sum_probs=181.4
Q ss_pred eeccccccccceeee-eecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccccc
Q 023643 7 NWDEDAYRKSILKER-EILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGF 85 (279)
Q Consensus 7 iw~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (279)
.|+.++ ..+..+ .+|.+.|++++|+|. ++.+||+|+.||+|++||+.+...... .+....
T Consensus 47 ~w~~~g---~~~~~~~~~h~~~V~~~~~s~~---~~~~l~s~s~dg~v~vwd~~~~~~~~~-------------~~~~~~ 107 (437)
T 3gre_A 47 MGNLRG---KLIATLMENEPNSITSSAVSPG---ETPYLITGSDQGVIKIWNLKEIIVGEV-------------YSSSLT 107 (437)
T ss_dssp GGGCCC---CEEEEECTTTTSCEEEEEEECS---SSCEEEEEETTSEEEEEEHHHHHTTCC-------------CSCSEE
T ss_pred cccccc---eEEeeeccCCCCceEEEEECCC---CCCEEEEecCCceEEEeECcccccCcc-------------cceeee
Confidence 577655 446666 789999999999993 688999999999999999875210000 111222
Q ss_pred ccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeE
Q 023643 86 LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAI 165 (279)
Q Consensus 86 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 165 (279)
+ +|.++|.+++|+|++. +|++++.||.|++||++.............+ .+..+...... ....+.++
T Consensus 108 ~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---~i~~~~~~~~~-------~~~~~~~~ 174 (437)
T 3gre_A 108 Y-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCE---CIRKINLKNFG-------KNEYAVRM 174 (437)
T ss_dssp E-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEE---EEEEEEGGGGS-------SCCCEEEE
T ss_pred c-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccc---eeEEEEccCcc-------cccCceEE
Confidence 2 4899999999999988 9999999999999998532222333322222 22222211100 12236677
Q ss_pred E--EcCCCCeEEEecCCCeEEEEecCCCcEEEEeec--CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 166 A--VDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG--HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 166 ~--~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
. +++++.+|++++.|+.|++||+++++++..+.. |...|++++|+|++++|++|+.||.|++||+++++++..+.
T Consensus 175 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~- 253 (437)
T 3gre_A 175 RAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWS- 253 (437)
T ss_dssp EEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEB-
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEe-
Confidence 7 668899999999999999999999999999998 88999999999999999999999999999999999998874
Q ss_pred CccccccCcceeeeEEEEc----CCCCEEEEEcCcceEEeCC
Q 023643 242 VKDKQLKGVISCVSCITLD----ASESWLVRVRATNYVILFS 279 (279)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~d~~i~~wd 279 (279)
..|...|.+++|+ |++.+|++|+.||.|++||
T Consensus 254 ------~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 289 (437)
T 3gre_A 254 ------FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN 289 (437)
T ss_dssp ------CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEE
T ss_pred ------cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEE
Confidence 2677799999665 5688999999999999996
No 80
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-35 Score=233.49 Aligned_cols=209 Identities=17% Similarity=0.274 Sum_probs=174.4
Q ss_pred ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEE
Q 023643 17 ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDV 96 (279)
Q Consensus 17 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 96 (279)
.+..+.+|...|.+++|+| ++++||+|+.||.|++|++.... .+.+..+.+|.++|.++
T Consensus 3 ~~~~~~~h~~~v~~~~~s~----~~~~l~~~~~dg~i~iw~~~~~~-----------------~~~~~~~~~h~~~v~~~ 61 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDY----YGKRLATCSSDKTIKIFEVEGET-----------------HKLIDTLTGHEGPVWRV 61 (379)
T ss_dssp --CCEEECCCCEEEEEECS----SSSEEEEEETTSCEEEEEEETTE-----------------EEEEEEECCCSSCEEEE
T ss_pred ccEEecCCcccEEEEEEcC----CCCEEEEEECCCcEEEEecCCCc-----------------ceeeeEecCCCCcEEEE
Confidence 3567889999999999999 89999999999999999997421 45667788999999999
Q ss_pred EecCC--CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC--CC
Q 023643 97 KFYGG--NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ--GG 172 (279)
Q Consensus 97 ~~~~~--~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~ 172 (279)
+|+|+ +. +|++++.||.|++||++... ......+.. +...|.+++|+|+ +.
T Consensus 62 ~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~----------------------~~~~v~~~~~~~~~~~~ 116 (379)
T 3jrp_A 62 DWAHPKFGT--ILASCSYDGKVLIWKEENGR-WSQIAVHAV----------------------HSASVNSVQWAPHEYGP 116 (379)
T ss_dssp EECCGGGCS--EEEEEETTSCEEEEEEETTE-EEEEEEECC----------------------CSSCEEEEEECCGGGCS
T ss_pred EeCCCCCCC--EEEEeccCCEEEEEEcCCCc-eeEeeeecC----------------------CCcceEEEEeCCCCCCC
Confidence 99987 66 99999999999999986431 001111111 1124799999999 89
Q ss_pred eEEEecCCCeEEEEecCCC--cEEEEeecCCcceEEEEEcC-------------CCcEEEEecCCCeEEEEeCCCCceE-
Q 023643 173 AIFSAAGDSCAYCWDVESS--RIKMVFKGHSDYLHCIVARN-------------STNQIVTGSEDGTARIWDCKSGKCI- 236 (279)
Q Consensus 173 ~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~i~~i~~~~-------------~~~~l~~~~~d~~i~vwd~~~~~~~- 236 (279)
+|++++.|+.|++||++++ .....+..|...|.+++|+| ++.+|++++.||.|++||+++++..
T Consensus 117 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 196 (379)
T 3jrp_A 117 LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 196 (379)
T ss_dssp EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE
T ss_pred EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce
Confidence 9999999999999999887 34556778999999999999 6999999999999999999876533
Q ss_pred ---EEecCCccccccCcceeeeEEEEcCC---CCEEEEEcCcceEEeCC
Q 023643 237 ---KVIDPVKDKQLKGVISCVSCITLDAS---ESWLVRVRATNYVILFS 279 (279)
Q Consensus 237 ---~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~~wd 279 (279)
..+ .+|...|.+++|+|+ +.+|++++.||.|++||
T Consensus 197 ~~~~~~--------~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 197 VLESTL--------EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp EEEEEE--------CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred eeEEEE--------ecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 344 688899999999999 89999999999999996
No 81
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-36 Score=233.83 Aligned_cols=226 Identities=9% Similarity=-0.022 Sum_probs=170.6
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.|++||++..+. +..+. ...|.++.|+| + +++++.|++|++|+......... ... .
T Consensus 56 ~Dg~v~iwd~~~~~~--~~~~~--~~~v~~~~~~~----~---~~s~s~D~~i~~w~~~~~~~~~~--~~~--------~ 114 (343)
T 3lrv_A 56 EDGALHFTQLKDSKT--ITTIT--TPNPRTGGEHP----A---IISRGPCNRLLLLYPGNQITILD--SKT--------N 114 (343)
T ss_dssp ETTEEEEEEESSSSC--EEEEE--EECCCTTCCCC----S---EEEECSTTEEEEEETTTEEEEEE--TTT--------C
T ss_pred CCCcEEEEECCCCcE--EEEEe--cCCceeeeeCC----c---eEEecCCCeEEEEEccCceEEee--cCC--------c
Confidence 389999999887643 33333 46788889999 5 99999999999998875210000 000 1
Q ss_pred cccccc-cCCccCeEEEEecC--CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643 81 EPDGFL-HGHDGPAYDVKFYG--GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS 157 (279)
Q Consensus 81 ~~~~~~-~~h~~~v~~~~~~~--~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (279)
+.+..+ .+|.++|.+++|+| +++ +|++++.||+|++||+++... ......++.
T Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~------------------- 170 (343)
T 3lrv_A 115 KVLREIEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQ---YIVHSAKSD------------------- 170 (343)
T ss_dssp CEEEEEECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCE---EEEECCCSS-------------------
T ss_pred ceeEEeecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcE---EEEEecCCC-------------------
Confidence 212222 25778999999999 887 999999999999999875322 111111111
Q ss_pred CCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEE-EEeec-CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce
Q 023643 158 PVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIK-MVFKG-HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC 235 (279)
Q Consensus 158 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~ 235 (279)
..+.+++|+|++.+|++|+.|+.|++||+++++.+ ..+.. |.++|++++|+|++.+|++++ |+.|++||+++++.
T Consensus 171 --~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~ 247 (343)
T 3lrv_A 171 --VEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVG 247 (343)
T ss_dssp --CCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTT
T ss_pred --CceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCc
Confidence 13789999999999999999999999999999887 78888 999999999999999999999 55999999999887
Q ss_pred EEEecCCccccccCcceeee--EEEEcCCCCEEEEEcC-cceEEeCC
Q 023643 236 IKVIDPVKDKQLKGVISCVS--CITLDASESWLVRVRA-TNYVILFS 279 (279)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~-d~~i~~wd 279 (279)
...+... ..|...+. +++|+|++++|++++. |+.+++|+
T Consensus 248 ~~~~~~~-----~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~ 289 (343)
T 3lrv_A 248 TLAYPTY-----TIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYK 289 (343)
T ss_dssp CBSSCCC-----BC-----CCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ceeeccc-----ccccccccceEEEECCCCCEEEEecCCCCcEEEEE
Confidence 7665432 22333343 6999999999999988 99999994
No 82
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2e-35 Score=255.80 Aligned_cols=220 Identities=15% Similarity=0.244 Sum_probs=191.9
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.|++||+.+. ..+..+..|..+|.+++|+| ++++|++++.||.|++||+.+ +
T Consensus 33 ~~g~v~iwd~~~~--~~~~~~~~~~~~v~~~~~s~----~~~~l~~~~~dg~i~vw~~~~-------------------~ 87 (814)
T 3mkq_A 33 YSGRVEIWNYETQ--VEVRSIQVTETPVRAGKFIA----RKNWIIVGSDDFRIRVFNYNT-------------------G 87 (814)
T ss_dssp TTSEEEEEETTTT--EEEEEEECCSSCEEEEEEEG----GGTEEEEEETTSEEEEEETTT-------------------C
T ss_pred CCCEEEEEECCCC--ceEEEEecCCCcEEEEEEeC----CCCEEEEEeCCCeEEEEECCC-------------------C
Confidence 3799999998776 34777888999999999999 899999999999999999998 5
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
+.+..+.+|.+.|.+++|+|+++ +|++++.||.|++|+++... .....+.++ ..
T Consensus 88 ~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~--~~~~~~~~~----------------------~~ 141 (814)
T 3mkq_A 88 EKVVDFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNW--ALEQTFEGH----------------------EH 141 (814)
T ss_dssp CEEEEEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTS--EEEEEEECC----------------------SS
T ss_pred cEEEEEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCc--eEEEEEcCC----------------------CC
Confidence 66777888999999999999998 99999999999999986421 111222211 11
Q ss_pred CceeEEEcC-CCCeEEEecCCCeEEEEecCCCcEEEEeecCC-cceEEEEEcC--CCcEEEEecCCCeEEEEeCCCCceE
Q 023643 161 ENNAIAVDP-QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHS-DYLHCIVARN--STNQIVTGSEDGTARIWDCKSGKCI 236 (279)
Q Consensus 161 ~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~i~~i~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~ 236 (279)
.|.+++|+| ++..+++++.|+.|++||+.+++....+..+. ..+.+++|+| ++.+|++++.||.|++||+++++.+
T Consensus 142 ~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 221 (814)
T 3mkq_A 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV 221 (814)
T ss_dssp CEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEE
T ss_pred cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE
Confidence 378999999 88899999999999999999888777776655 8899999999 8999999999999999999999998
Q ss_pred EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
..+ .+|...|.+++|+|++++|++++.||.|++||
T Consensus 222 ~~~--------~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd 256 (814)
T 3mkq_A 222 ATL--------EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256 (814)
T ss_dssp EEE--------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred EEE--------cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 888 67888999999999999999999999999996
No 83
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.9e-34 Score=232.92 Aligned_cols=212 Identities=22% Similarity=0.402 Sum_probs=181.7
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.|++||+++.+ .+..+.+|...|.+++|. +++|++|+.||+|++||+.+ +
T Consensus 151 ~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~------~~~l~sg~~dg~i~vwd~~~-------------------~ 203 (435)
T 1p22_A 151 RDNTIKIWDKNTLE--CKRILTGHTGSVLCLQYD------ERVIITGSSDSTVRVWDVNT-------------------G 203 (435)
T ss_dssp SSSCEEEEESSSCC--EEEEECCCSSCEEEEECC------SSEEEEEETTSCEEEEESSS-------------------C
T ss_pred CCCeEEEEeCCCCe--EEEEEcCCCCcEEEEEEC------CCEEEEEcCCCeEEEEECCC-------------------C
Confidence 48999999988764 467788999999999984 47999999999999999998 5
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
+.+..+.+|...|.+++|++ . ++++++.||.|++||++............++ ..
T Consensus 204 ~~~~~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~----------------------~~ 257 (435)
T 1p22_A 204 EMLNTLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGH----------------------RA 257 (435)
T ss_dssp CEEEEECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCC----------------------SS
T ss_pred cEEEEEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCC----------------------CC
Confidence 66778889999999999974 3 8999999999999998754322211222221 12
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
.|.+++| +++++++|+.|+.|++||+++++.+..+.+|...|.+++++ ++++++|+.||.|++||+++++++..+
T Consensus 258 ~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~- 332 (435)
T 1p22_A 258 AVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL- 332 (435)
T ss_dssp CEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE-
T ss_pred cEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEE-
Confidence 3688888 67899999999999999999999999999999999999994 789999999999999999999999998
Q ss_pred CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+|...|.+++| ++.+|++|+.||.|++||
T Consensus 333 -------~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd 362 (435)
T 1p22_A 333 -------EGHEELVRCIRF--DNKRIVSGAYDGKIKVWD 362 (435)
T ss_dssp -------CCCSSCEEEEEC--CSSEEEEEETTSCEEEEE
T ss_pred -------eCCcCcEEEEEe--cCCEEEEEeCCCcEEEEE
Confidence 688889999999 789999999999999996
No 84
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=6.3e-35 Score=221.29 Aligned_cols=243 Identities=11% Similarity=0.035 Sum_probs=159.6
Q ss_pred Cceeeeccccc-cccceeeeeecccceEEEEECCCC---------------------CCC----CCEEEEecCCCcEEEE
Q 023643 3 GDSTNWDEDAY-RKSILKEREILTRTVFRTVWGPSK---------------------DGS----PDTIVIASSDGSITSY 56 (279)
Q Consensus 3 G~v~iw~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~---------------------~~~----~~~l~~~~~dg~i~iw 56 (279)
..|++|++... +.+.+.++.+|..+|..+.+.|+. +++ ++.+++++.+ +++|
T Consensus 63 ~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~ 140 (356)
T 2w18_A 63 DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNI--KAVL 140 (356)
T ss_dssp SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEE--EEEE
T ss_pred ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCe--EEEE
Confidence 57899997665 234566777776555444444410 126 7777776642 4455
Q ss_pred eCCCCCcccccccCCcccceeee----ccccccccCCccCeEEEEecC-CCCceEEEEeeCCCcEEEeecCCCccCccee
Q 023643 57 SIPSCISKLPLGLSNSKVQQLLG----IEPDGFLHGHDGPAYDVKFYG-GNEDALLLSCGDDGRICGWRWKEFTESKVPI 131 (279)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 131 (279)
++.++.............-..+. ++.+..+.+|...+..++|+| ++.+.+|++++.|++|+|||+++. +...
T Consensus 141 ~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG---k~l~ 217 (356)
T 2w18_A 141 GLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG---QLLK 217 (356)
T ss_dssp EETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC---CEEE
T ss_pred ecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC---cEEE
Confidence 55432211110000000000110 455566678888899999998 332239999999999999998754 3444
Q ss_pred eeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeE------------EEecCCCeEEEEecCCCcEEEEe--
Q 023643 132 NLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAI------------FSAAGDSCAYCWDVESSRIKMVF-- 197 (279)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l------------~~~~~d~~i~i~d~~~~~~~~~~-- 197 (279)
.+.+++... ..+.+++|+|++.++ ++|+.|++|++||..+++.+..+
T Consensus 218 tL~g~~~~v-------------------~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~ 278 (356)
T 2w18_A 218 KMHIDDSYQ-------------------ASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLY 278 (356)
T ss_dssp EEECCC----------------------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEE
T ss_pred EEcCCCcce-------------------eeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEe
Confidence 444322110 125778899988876 56788999999999999888765
Q ss_pred ---ecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeee-EEEEcCCCCEEEEEcCcc
Q 023643 198 ---KGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVS-CITLDASESWLVRVRATN 273 (279)
Q Consensus 198 ---~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~ 273 (279)
.+|...+.+..++ +.++++++.|++|+|||+.+++++.++ .+|...+. .++|+|||++|++|+.|+
T Consensus 279 ~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL--------~gH~~~vvs~vafSPDG~~LaSGS~D~ 348 (356)
T 2w18_A 279 CLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALL--------PPVSDQHWSFVKWSGTDSHLLAGQKDG 348 (356)
T ss_dssp CCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEE--------CCC--CCCCEEEECSSSSEEEEECTTS
T ss_pred eccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEe--------cCCCCCeEEEEEECCCCCEEEEEECCC
Confidence 3666655544444 789999999999999999999999999 56766544 689999999999999999
Q ss_pred eEEeCC
Q 023643 274 YVILFS 279 (279)
Q Consensus 274 ~i~~wd 279 (279)
+|+|||
T Consensus 349 TIklWd 354 (356)
T 2w18_A 349 NIFVYH 354 (356)
T ss_dssp CEEEEE
T ss_pred cEEEec
Confidence 999996
No 85
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.2e-34 Score=259.40 Aligned_cols=221 Identities=13% Similarity=0.161 Sum_probs=187.2
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.|++||..+.. .+..+.+|...|.+++|+| ++++|++++.||+|++||+.+ +
T Consensus 635 ~d~~i~vw~~~~~~--~~~~~~~h~~~v~~~~~s~----~~~~l~s~~~d~~v~vwd~~~-------------------~ 689 (1249)
T 3sfz_A 635 ADKTLQVFKAETGE--KLLDIKAHEDEVLCCAFSS----DDSYIATCSADKKVKIWDSAT-------------------G 689 (1249)
T ss_dssp TTSCEEEEETTTCC--EEEEECCCSSCEEEEEECT----TSSEEEEEETTSEEEEEETTT-------------------C
T ss_pred CCCeEEEEECCCCC--EEEEeccCCCCEEEEEEec----CCCEEEEEeCCCeEEEEECCC-------------------C
Confidence 48999999988774 4777889999999999999 899999999999999999998 6
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
+.+..+.+|...|.+++|+|++...++++++.|+.|++||+++. .....+.++. .
T Consensus 690 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~---~~~~~~~~h~----------------------~ 744 (1249)
T 3sfz_A 690 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK---ECRNTMFGHT----------------------N 744 (1249)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS---SEEEEECCCS----------------------S
T ss_pred ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc---chhheecCCC----------------------C
Confidence 77788889999999999999654458999999999999998653 2222222211 1
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEe-------------------------------------------
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVF------------------------------------------- 197 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~------------------------------------------- 197 (279)
.|++++|+|+++++++++.||.|++||+++++....+
T Consensus 745 ~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~ 824 (1249)
T 3sfz_A 745 SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF 824 (1249)
T ss_dssp CEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEE
T ss_pred CEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEE
Confidence 3678888888888888888888888887765443322
Q ss_pred -----------e-cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCE
Q 023643 198 -----------K-GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESW 265 (279)
Q Consensus 198 -----------~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 265 (279)
. +|...+.+++|+|+++++++++.||.|++||+.+++.+..+ .+|...|.+++|+|++++
T Consensus 825 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~--------~~h~~~v~~v~~spdg~~ 896 (1249)
T 3sfz_A 825 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC--------RGHLSWVHGVMFSPDGSS 896 (1249)
T ss_dssp ETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEE--------CCCSSCEEEEEECTTSSE
T ss_pred EecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeec--------CCCccceEEEEECCCCCE
Confidence 1 67788999999999999999999999999999999999888 788999999999999999
Q ss_pred EEEEcCcceEEeCC
Q 023643 266 LVRVRATNYVILFS 279 (279)
Q Consensus 266 l~~~~~d~~i~~wd 279 (279)
|++++.||.|++||
T Consensus 897 l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 897 FLTASDDQTIRVWE 910 (1249)
T ss_dssp EEEEETTSCEEEEE
T ss_pred EEEEeCCCeEEEEE
Confidence 99999999999996
No 86
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-34 Score=226.75 Aligned_cols=203 Identities=13% Similarity=0.143 Sum_probs=175.2
Q ss_pred eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643 18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK 97 (279)
Q Consensus 18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 97 (279)
...+.+|...|++++|+| ++++|++++.||.|++||+.+ ++.+..+.+|...|.+++
T Consensus 25 ~~~l~~h~~~v~~~~~s~----~~~~l~~~~~dg~i~vwd~~~-------------------~~~~~~~~~h~~~v~~~~ 81 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNK----EGDLLFSCSKDSSASVWYSLN-------------------GERLGTLDGHTGTIWSID 81 (369)
T ss_dssp EEEEECCSSCEEEEEECT----TSCEEEEEESSSCEEEEETTT-------------------CCEEEEECCCSSCEEEEE
T ss_pred cEEEEEeeceEEEEEEcC----CCCEEEEEeCCCEEEEEeCCC-------------------chhhhhhhhcCCcEEEEE
Confidence 446789999999999999 899999999999999999988 566778889999999999
Q ss_pred ecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe
Q 023643 98 FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA 177 (279)
Q Consensus 98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 177 (279)
|+|+++ +|++++.||.|++||+++.. ....+.. ...+.+++|+|++++++++
T Consensus 82 ~~~~~~--~l~s~~~dg~i~iwd~~~~~---~~~~~~~-----------------------~~~v~~~~~~~~~~~l~~~ 133 (369)
T 3zwl_B 82 VDCFTK--YCVTGSADYSIKLWDVSNGQ---CVATWKS-----------------------PVPVKRVEFSPCGNYFLAI 133 (369)
T ss_dssp ECTTSS--EEEEEETTTEEEEEETTTCC---EEEEEEC-----------------------SSCEEEEEECTTSSEEEEE
T ss_pred EcCCCC--EEEEEeCCCeEEEEECCCCc---EEEEeec-----------------------CCCeEEEEEccCCCEEEEe
Confidence 999998 99999999999999986532 1111110 1137899999999999999
Q ss_pred cCC-----CeEEEEecCCCc-----------EEEEeecCCc--ceEEEEEcCCCcEEEEecCCCeEEEEeCCC-CceEEE
Q 023643 178 AGD-----SCAYCWDVESSR-----------IKMVFKGHSD--YLHCIVARNSTNQIVTGSEDGTARIWDCKS-GKCIKV 238 (279)
Q Consensus 178 ~~d-----~~i~i~d~~~~~-----------~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~ 238 (279)
+.+ +.|++||+.... ....+..|.. .+.+++|+|++++|++++.||.|++||+++ ++.+..
T Consensus 134 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 213 (369)
T 3zwl_B 134 LDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDS 213 (369)
T ss_dssp ECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEE
T ss_pred cCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEE
Confidence 998 999999997653 3344555665 899999999999999999999999999998 677777
Q ss_pred ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+ ..|...|.+++|+|++++|++++.|+.|++||
T Consensus 214 ~--------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d 246 (369)
T 3zwl_B 214 I--------DLHEKSISDMQFSPDLTYFITSSRDTNSFLVD 246 (369)
T ss_dssp E--------ECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred E--------ecCCCceeEEEECCCCCEEEEecCCceEEEEE
Confidence 7 67888999999999999999999999999996
No 87
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.1e-34 Score=225.35 Aligned_cols=233 Identities=10% Similarity=0.050 Sum_probs=179.4
Q ss_pred CCCceeeecccccc-ccceeeeeecccceEEEEECCCCCCCCC-EEEEecCCCcEEEEeC-CCCCcccccccCCccccee
Q 023643 1 MCGDSTNWDEDAYR-KSILKEREILTRTVFRTVWGPSKDGSPD-TIVIASSDGSITSYSI-PSCISKLPLGLSNSKVQQL 77 (279)
Q Consensus 1 ~dG~v~iw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~dg~i~iw~~-~~~~~~~~~~~~~~~~~~~ 77 (279)
.||.|++|+++... .........|...|.+++|+| +++ +|++|+.||.|++|++ .+.
T Consensus 31 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~dg~i~~wd~~~~~---------------- 90 (342)
T 1yfq_A 31 WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID----NTDLQIYVGTVQGEILKVDLIGSP---------------- 90 (342)
T ss_dssp TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE----SSSEEEEEEETTSCEEEECSSSSS----------------
T ss_pred CCCeEEEEEeCCCCccccceeeeecCCceEEEEECC----CCCcEEEEEcCCCeEEEEEeccCC----------------
Confidence 48999999987654 112445568999999999999 899 9999999999999999 762
Q ss_pred eeccccccccC--CccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcccc
Q 023643 78 LGIEPDGFLHG--HDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGA 155 (279)
Q Consensus 78 ~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (279)
....+.+ |...|.+++|+| +. +|++++.|+.|++||++......... ... ....
T Consensus 91 ----~~~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~---------------~~~~ 146 (342)
T 1yfq_A 91 ----SFQALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAV--KNL---------------NSNN 146 (342)
T ss_dssp ----SEEECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEE--EES---------------CSSS
T ss_pred ----ceEeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccc--cCC---------------eeeE
Confidence 2255667 999999999999 76 99999999999999986411100000 000 0000
Q ss_pred CCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCC-Cc--EEEEeecCCcceEEEEEcC-CCcEEEEecCCCeEEEEeCC
Q 023643 156 LSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVES-SR--IKMVFKGHSDYLHCIVARN-STNQIVTGSEDGTARIWDCK 231 (279)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~--~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~ 231 (279)
..+...+.+++|+|++ +++++.|+.|++||+++ +. .......|...+.+++|+| +++++++++.||.|++|+++
T Consensus 147 ~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~ 224 (342)
T 1yfq_A 147 TKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD 224 (342)
T ss_dssp SSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECC
T ss_pred EeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEc
Confidence 1122348999999886 99999999999999998 54 3344556888999999999 99999999999999999998
Q ss_pred CC------ceEEEecCCccc-cccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 232 SG------KCIKVIDPVKDK-QLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 232 ~~------~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.. +....+..+... .-..|...|.+++|+|++++|++++.||.|++||
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd 279 (342)
T 1yfq_A 225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN 279 (342)
T ss_dssp TTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred CCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEc
Confidence 76 777777432200 0012345999999999999999999999999996
No 88
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-34 Score=232.12 Aligned_cols=208 Identities=14% Similarity=0.132 Sum_probs=169.0
Q ss_pred cccceEEEEECCCCCCCCCEE-EEecCCCcEEEEeCC--CCCcccccccCCcccceeeecccccccc--CCccCeEEEEe
Q 023643 24 LTRTVFRTVWGPSKDGSPDTI-VIASSDGSITSYSIP--SCISKLPLGLSNSKVQQLLGIEPDGFLH--GHDGPAYDVKF 98 (279)
Q Consensus 24 ~~~~v~~~~~~~~~~~~~~~l-~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~ 98 (279)
|.+.|.+++|+| ++++| ++++.||.|++|++. + ++.+..+. .|...|.+++|
T Consensus 101 ~~~~v~~~~~s~----d~~~l~~~~~~dg~v~iwd~~~~~-------------------~~~~~~~~~~~~~~~v~~~~~ 157 (450)
T 2vdu_B 101 IYSYIRNLRLTS----DESRLIACADSDKSLLVFDVDKTS-------------------KNVLKLRKRFCFSKRPNAISI 157 (450)
T ss_dssp CCCCEEEEEECT----TSSEEEEEEGGGTEEEEEEECSSS-------------------SSCEEEEEEEECSSCEEEEEE
T ss_pred cCCceEEEEEcC----CCCEEEEEECCCCeEEEEECcCCC-------------------CceeeeeecccCCCCceEEEE
Confidence 444799999999 89986 899999999999998 5 34445554 56788999999
Q ss_pred cCCCCceEEEEeeCCCcEEEeecCCCccCc-ceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC---CCeE
Q 023643 99 YGGNEDALLLSCGDDGRICGWRWKEFTESK-VPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ---GGAI 174 (279)
Q Consensus 99 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l 174 (279)
+|++. +|++++.||.|++|++.+..... ....+.+ +...|++++|+|+ +++|
T Consensus 158 sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~----------------------h~~~v~~~~~sp~~~~~~~l 213 (450)
T 2vdu_B 158 AEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILG----------------------HVSMLTDVHLIKDSDGHQFI 213 (450)
T ss_dssp CTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEE----------------------CSSCEEEEEEEECTTSCEEE
T ss_pred cCCCC--EEEEEeCCCcEEEEecCCcccccccceeeec----------------------ccCceEEEEEcCCCCCCcEE
Confidence 99998 99999999999999987543322 1111111 1124799999999 8899
Q ss_pred EEecCCCeEEEEecCCCcEEEE-eecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccc--------
Q 023643 175 FSAAGDSCAYCWDVESSRIKMV-FKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDK-------- 245 (279)
Q Consensus 175 ~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-------- 245 (279)
++++.|+.|++||+++++.+.. +.+|...|.+++|+ ++++|++++.|+.|++||+++++++..+......
T Consensus 214 ~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (450)
T 2vdu_B 214 ITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQH 292 (450)
T ss_dssp EEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTS
T ss_pred EEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcc
Confidence 9999999999999999988887 55899999999999 9999999999999999999999988887532100
Q ss_pred ---------cccCcceeeeEEEEcCCCCEEEEEc-CcceEEeCC
Q 023643 246 ---------QLKGVISCVSCITLDASESWLVRVR-ATNYVILFS 279 (279)
Q Consensus 246 ---------~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd 279 (279)
........|.+++|+|++++|++++ .|+.|++|+
T Consensus 293 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~ 336 (450)
T 2vdu_B 293 LAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE 336 (450)
T ss_dssp BC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred cccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 0002345789999999999999998 899999996
No 89
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-35 Score=236.17 Aligned_cols=236 Identities=16% Similarity=0.206 Sum_probs=179.8
Q ss_pred CCCceeeecccc---cc-ccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCC---CCCcccccccCCcc
Q 023643 1 MCGDSTNWDEDA---YR-KSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIP---SCISKLPLGLSNSK 73 (279)
Q Consensus 1 ~dG~v~iw~~~~---~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~---~~~~~~~~~~~~~~ 73 (279)
.||.|++||++. .. ......+ .|...|.+++|+| ++++|++|+.||+|++||+. ++.......
T Consensus 84 ~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~----- 153 (437)
T 3gre_A 84 DQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIP----NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLN----- 153 (437)
T ss_dssp TTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECT----TSSEEEEEETTSEEEEEEEEEEEETTEEEEEE-----
T ss_pred CCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeC----CCCEEEEEeCCCEEEEEEeccccCCceeeccc-----
Confidence 489999999876 22 1112222 5899999999999 89999999999999999995 221111000
Q ss_pred cceeeeccccccc--cC--CccCeEEEE--ecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccC-cccceEEeec
Q 023643 74 VQQLLGIEPDGFL--HG--HDGPAYDVK--FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGN-HVKPVLDLVN 146 (279)
Q Consensus 74 ~~~~~~~~~~~~~--~~--h~~~v~~~~--~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 146 (279)
...+..+ .. +...+.++. +++++. +|++++.|+.|++||+++. .....+... +.
T Consensus 154 ------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~h~-------- 214 (437)
T 3gre_A 154 ------CECIRKINLKNFGKNEYAVRMRAFVNEEKS--LLVALTNLSRVIIFDIRTL---ERLQIIENSPRH-------- 214 (437)
T ss_dssp ------EEEEEEEEGGGGSSCCCEEEEEEEECSSCE--EEEEEETTSEEEEEETTTC---CEEEEEECCGGG--------
T ss_pred ------cceeEEEEccCcccccCceEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCC---eeeEEEccCCCC--------
Confidence 1111111 12 566777877 446665 9999999999999998653 222233221 11
Q ss_pred CCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee-cCCcceEEEEEcC----CCcEEEEecC
Q 023643 147 HQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK-GHSDYLHCIVARN----STNQIVTGSE 221 (279)
Q Consensus 147 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~----~~~~l~~~~~ 221 (279)
..|++++|+|++.+|++|+.||.|++||+++++++..+. .|...|.+++|+| ++.+|++++.
T Consensus 215 -------------~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~ 281 (437)
T 3gre_A 215 -------------GAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSS 281 (437)
T ss_dssp -------------CCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEEST
T ss_pred -------------CceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcC
Confidence 137999999999999999999999999999999999886 7888999996654 6789999999
Q ss_pred CCeEEEEeCCCCceEEEecCCccc----------------cccC--cceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 222 DGTARIWDCKSGKCIKVIDPVKDK----------------QLKG--VISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 222 d~~i~vwd~~~~~~~~~~~~~~~~----------------~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
||.|++||+++++++..+..+... .+.+ |...|++++|+ ++++|++|+.|+.|++||
T Consensus 282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 282 KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFS 356 (437)
T ss_dssp TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEE
T ss_pred CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEE
Confidence 999999999999998888754311 1223 78889999999 789999999999999996
No 90
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=6.3e-34 Score=227.11 Aligned_cols=242 Identities=11% Similarity=0.090 Sum_probs=183.8
Q ss_pred cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEE
Q 023643 16 SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYD 95 (279)
Q Consensus 16 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 95 (279)
.....+.+|.+.|++++|+| ++|++|+.||.|++|++.+...... ......+.+|..+|.+
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~------~~l~s~~~dg~i~iw~~~~~~~~~~-------------~~~~~~~~~h~~~v~~ 67 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN------SFTVSCSGDGYLKVWDNKLLDNENP-------------KDKSYSHFVHKSGLHH 67 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS------SEEEEEETTSEEEEEESBCCTTCCG-------------GGGEEEEECCTTCEEE
T ss_pred hhhhhhhhhhcCeEEEEecC------CeEEEEcCCCEEEEEECCCcccccC-------------CCcceEEecCCCcEEE
Confidence 34556788999999999988 6999999999999999987421111 1255677789999999
Q ss_pred EEecCC----C---CceEEEEeeCCCcEEEeecCCCccCcc--eeeeccCc----ccc----------------------
Q 023643 96 VKFYGG----N---EDALLLSCGDDGRICGWRWKEFTESKV--PINLQGNH----VKP---------------------- 140 (279)
Q Consensus 96 ~~~~~~----~---~~~~l~s~~~dg~i~iw~~~~~~~~~~--~~~~~~~~----~~~---------------------- 140 (279)
++|+|+ + . +|++++.||.|++|+++....... ...+..+. ...
T Consensus 68 ~~~~~~~~~~g~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~ 145 (397)
T 1sq9_A 68 VDVLQAIERDAFELC--LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATD 145 (397)
T ss_dssp EEEEEEEETTTEEEE--EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEE
T ss_pred EEEecccccCCcccc--EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEe
Confidence 999999 7 7 999999999999999875432000 11111110 111
Q ss_pred ------eEEeec------CCCCC-----cccc-----CCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee
Q 023643 141 ------VLDLVN------HQHKG-----PWGA-----LSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK 198 (279)
Q Consensus 141 ------~~~~~~------~~~~~-----~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 198 (279)
++++.. ..... .+.. ..+...|.+++|+|++ ++++++.|+.|++||+++++++..+.
T Consensus 146 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~ 224 (397)
T 1sq9_A 146 VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFE 224 (397)
T ss_dssp TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEE
T ss_pred CCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEe
Confidence 111111 01100 1100 2245679999999999 99999999999999999999999999
Q ss_pred c---C---CcceEEEEEcCCCcEEEEecCC---CeEEEEeCCCCceEEEecCCcc-----ccccCcceeeeEEEEcCCCC
Q 023643 199 G---H---SDYLHCIVARNSTNQIVTGSED---GTARIWDCKSGKCIKVIDPVKD-----KQLKGVISCVSCITLDASES 264 (279)
Q Consensus 199 ~---~---~~~i~~i~~~~~~~~l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~ 264 (279)
. | ...|.+++|+|++++|++++.| +.|++||+++++.+..+..... .....|...|.+++|+|+++
T Consensus 225 ~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 304 (397)
T 1sq9_A 225 SQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 304 (397)
T ss_dssp CCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS
T ss_pred ccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCC
Confidence 8 8 9999999999999999999999 9999999999999988832100 00001888999999999999
Q ss_pred EEEEEcCcceEEeCC
Q 023643 265 WLVRVRATNYVILFS 279 (279)
Q Consensus 265 ~l~~~~~d~~i~~wd 279 (279)
+|++++.||.|++||
T Consensus 305 ~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 305 TLCSAGWDGKLRFWD 319 (397)
T ss_dssp EEEEEETTSEEEEEE
T ss_pred EEEEEeCCCeEEEEE
Confidence 999999999999996
No 91
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=7.3e-34 Score=238.74 Aligned_cols=242 Identities=15% Similarity=0.182 Sum_probs=193.2
Q ss_pred CCCceeeeccccccccceeeeeeccc---ceEEEEECCCCCCC-CCEEEEecCCCcEEEEeCCCCCcccccccCCcccce
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTR---TVFRTVWGPSKDGS-PDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQ 76 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 76 (279)
.||.|++||.+..+ .+..+..|.. .|.+++|+| + +++|++++.||.|++||+.+
T Consensus 181 ~d~~v~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~dg~i~vwd~~~---------------- 238 (615)
T 1pgu_A 181 DDGSVVFYQGPPFK--FSASDRTHHKQGSFVRDVEFSP----DSGEFVITVGSDRKISCFDGKS---------------- 238 (615)
T ss_dssp TTTEEEEEETTTBE--EEEEECSSSCTTCCEEEEEECS----TTCCEEEEEETTCCEEEEETTT----------------
T ss_pred CCCcEEEEeCCCcc--eeeeecccCCCCceEEEEEECC----CCCCEEEEEeCCCeEEEEECCC----------------
Confidence 37899999987764 4677888988 999999999 8 99999999999999999987
Q ss_pred eeeccccccc-c---CCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcce----------------------
Q 023643 77 LLGIEPDGFL-H---GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVP---------------------- 130 (279)
Q Consensus 77 ~~~~~~~~~~-~---~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~---------------------- 130 (279)
++.+..+ . .|..+|.+++|+ ++. +|++++.|+.|++||+++.......
T Consensus 239 ---~~~~~~~~~~~~~~~~~v~~~~~~-~~~--~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 312 (615)
T 1pgu_A 239 ---GEFLKYIEDDQEPVQGGIFALSWL-DSQ--KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI 312 (615)
T ss_dssp ---CCEEEECCBTTBCCCSCEEEEEES-SSS--EEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEE
T ss_pred ---CCEeEEecccccccCCceEEEEEc-CCC--EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeE
Confidence 4555666 5 799999999999 777 9999999999999998753211000
Q ss_pred --------------------eeeccC--------------------------------cccceEEeec------------
Q 023643 131 --------------------INLQGN--------------------------------HVKPVLDLVN------------ 146 (279)
Q Consensus 131 --------------------~~~~~~--------------------------------~~~~~~~~~~------------ 146 (279)
..+.++ +...+..+..
T Consensus 313 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d 392 (615)
T 1pgu_A 313 ISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWD 392 (615)
T ss_dssp EEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETT
T ss_pred EEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCC
Confidence 000000 0000000000
Q ss_pred -------------------------------------------------------------------------CCCCCc-
Q 023643 147 -------------------------------------------------------------------------HQHKGP- 152 (279)
Q Consensus 147 -------------------------------------------------------------------------~~~~~~- 152 (279)
...-..
T Consensus 393 ~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~ 472 (615)
T 1pgu_A 393 DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVF 472 (615)
T ss_dssp TEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEE
T ss_pred CCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEE
Confidence 000000
Q ss_pred ---------cccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec-CCcceEEEEEcC----------C
Q 023643 153 ---------WGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG-HSDYLHCIVARN----------S 212 (279)
Q Consensus 153 ---------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~----------~ 212 (279)
.....+...|++++|+|++++|++++.|+.|++||+.+++.+..+.+ |...|++++|+| +
T Consensus 473 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~ 552 (615)
T 1pgu_A 473 KLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE 552 (615)
T ss_dssp ETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCS
T ss_pred ECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccC
Confidence 11233556799999999999999999999999999999999999988 999999999999 9
Q ss_pred CcEEEEecCCCeEEEEeCCCC-ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 213 TNQIVTGSEDGTARIWDCKSG-KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 213 ~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+++|++++.||.|++||+.++ +++..+ .+|...|++++|+|+++ |++++.||.|++||
T Consensus 553 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~--------~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 553 EDLVATGSLDTNIFIYSVKRPMKIIKAL--------NAHKDGVNNLLWETPST-LVSSGADACIKRWN 611 (615)
T ss_dssp CCEEEEEETTSCEEEEESSCTTCCEEET--------TSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCceechhh--------hcCccceEEEEEcCCCC-eEEecCCceEEEEe
Confidence 999999999999999999997 677776 78899999999999999 99999999999996
No 92
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.1e-34 Score=231.60 Aligned_cols=243 Identities=15% Similarity=0.175 Sum_probs=168.2
Q ss_pred ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCc------------
Q 023643 23 ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHD------------ 90 (279)
Q Consensus 23 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------ 90 (279)
.+.+.|++++|+| ++++||+|+.||.|+||++.+......... ...+....+.+|.
T Consensus 26 ~~~~~V~~v~~s~----~g~~la~g~~dg~v~iw~~~~~~~~~~~~~--------~~~~~~~~~~~h~~~~~~~~~~~~~ 93 (447)
T 3dw8_B 26 AEADIISTVEFNH----SGELLATGDKGGRVVIFQQEQENKIQSHSR--------GEYNVYSTFQSHEPEFDYLKSLEIE 93 (447)
T ss_dssp CGGGSEEEEEECS----SSSEEEEEETTSEEEEEEECC-----CCCC--------CCEEEEEEEECCCCEEEGGGTEEEC
T ss_pred cccCcEEEEEECC----CCCEEEEEcCCCeEEEEEecCCCCCCcccc--------cceeEeccccccccccccccccccc
Confidence 3678999999999 999999999999999999987431100000 0022456777887
Q ss_pred cCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcc------------cceEE---eecCCCCCcccc
Q 023643 91 GPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHV------------KPVLD---LVNHQHKGPWGA 155 (279)
Q Consensus 91 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~------------~~~~~---~~~~~~~~~~~~ 155 (279)
++|.+++|+|++...+|++++.|++|++|++..............+.. .+... ............
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 889999999997212899999999999999865321100000000000 00000 000000000001
Q ss_pred CCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCC-CcEEE-------EeecCCcceEEEEEcCCC-cEEEEecCCCeEE
Q 023643 156 LSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVES-SRIKM-------VFKGHSDYLHCIVARNST-NQIVTGSEDGTAR 226 (279)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~-------~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~ 226 (279)
..+...|.+++|+|++++|++| .|+.|++||+++ ++.+. .+.+|...|.+++|+|++ ++|++|+.||.|+
T Consensus 174 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 252 (447)
T 3dw8_B 174 NAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIR 252 (447)
T ss_dssp SCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred cCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEE
Confidence 2344568999999999999998 799999999984 44444 256799999999999998 9999999999999
Q ss_pred EEeCCCCce----EEEecCCcc----ccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 227 IWDCKSGKC----IKVIDPVKD----KQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 227 vwd~~~~~~----~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+||+++++. ...+..+.. ..+..|...|.+++|+|++++|++++. +.|++||
T Consensus 253 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd 312 (447)
T 3dw8_B 253 LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWD 312 (447)
T ss_dssp EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEE
T ss_pred EEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEe
Confidence 999999886 666632210 001112238999999999999999999 9999996
No 93
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-33 Score=216.52 Aligned_cols=225 Identities=19% Similarity=0.220 Sum_probs=183.3
Q ss_pred cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEE
Q 023643 16 SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYD 95 (279)
Q Consensus 16 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 95 (279)
.....+.+|.+.|.+++| | ++.+|++++.||.|++||+.+ .+....+..|...|.+
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~----~~~~l~s~~~dg~v~vw~~~~-------------------~~~~~~~~~~~~~v~~ 64 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-V----DDSKVASVSRDGTVRLWSKDD-------------------QWLGTVVYTGQGFLNS 64 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-E----ETTEEEEEETTSEEEEEEESS-------------------SEEEEEEEECSSCEEE
T ss_pred HHHHHhhCCCCCcEEEEe-c----CCCEEEEEEcCCcEEEEECCC-------------------CEEEEEeecCCccEEE
Confidence 456788999999999999 8 899999999999999999987 5556677789999999
Q ss_pred EEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecC-----------------CCCCccccCCC
Q 023643 96 VKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNH-----------------QHKGPWGALSP 158 (279)
Q Consensus 96 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~ 158 (279)
++|+|++. +|++++.||.|++|++...........+.+ +...+..+... ..........+
T Consensus 65 ~~~~~~~~--~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 141 (313)
T 3odt_A 65 VCYDSEKE--LLLFGGKDTMINGVPLFATSGEDPLYTLIG-HQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAH 141 (313)
T ss_dssp EEEETTTT--EEEEEETTSCEEEEETTCCTTSCC-CEECC-CSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEECC
T ss_pred EEECCCCC--EEEEecCCCeEEEEEeeecCCCCcccchhh-cccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecccC
Confidence 99999998 999999999999999876544333333332 22222222111 01111112335
Q ss_pred CCCceeEEEcC-CCCeEEEecCCCeEEEEecCCCcEEEEeec-CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE
Q 023643 159 VPENNAIAVDP-QGGAIFSAAGDSCAYCWDVESSRIKMVFKG-HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI 236 (279)
Q Consensus 159 ~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~ 236 (279)
...+.++.|.| ++..+++++.|+.|++|| ..+....+.. |...+.+++|+|++. +++++.||.|++||+++++.+
T Consensus 142 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~ 218 (313)
T 3odt_A 142 NASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVL 218 (313)
T ss_dssp SSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEE
T ss_pred CCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhh
Confidence 56789999988 889999999999999999 4667777777 899999999999988 999999999999999999999
Q ss_pred EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
..+ ..|...|.+++|+|++ .|++++.||.|++||
T Consensus 219 ~~~--------~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd 252 (313)
T 3odt_A 219 RTY--------EGHESFVYCIKLLPNG-DIVSCGEDRTVRIWS 252 (313)
T ss_dssp EEE--------ECCSSCEEEEEECTTS-CEEEEETTSEEEEEC
T ss_pred hhh--------hcCCceEEEEEEecCC-CEEEEecCCEEEEEE
Confidence 888 6788899999999999 599999999999997
No 94
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1e-33 Score=221.61 Aligned_cols=216 Identities=14% Similarity=0.109 Sum_probs=172.2
Q ss_pred eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643 19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF 98 (279)
Q Consensus 19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 98 (279)
..+.+|.+.|++++|+| ++++||+|+.||.|++|++.+.... .+....+.+|..+|.+++|
T Consensus 5 ~~~~gH~~~v~~~~~~~----~~~~l~~~~~dg~i~iw~~~~~~~~---------------~~~~~~~~~~~~~v~~~~~ 65 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDF----YGRHVATCSSDQHIKVFKLDKDTSN---------------WELSDSWRAHDSSIVAIDW 65 (351)
T ss_dssp CEECCCSSCEEEEEECS----SSSEEEEEETTSEEEEEEECSSSCC---------------EEEEEEEECCSSCEEEEEE
T ss_pred ccCcccccceeEEEEcC----CCCEEEEeeCCCeEEEEECCCCCCc---------------ceecceeccCCCcEEEEEE
Confidence 34678999999999999 8999999999999999999863211 2345667889999999999
Q ss_pred cC--CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC--CCeE
Q 023643 99 YG--GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ--GGAI 174 (279)
Q Consensus 99 ~~--~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l 174 (279)
+| ++. +|++++.||.|++||++........ .....+..+. .+...|.+++|+|+ +.++
T Consensus 66 ~~~~d~~--~l~s~~~dg~v~vwd~~~~~~~~~~-----~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~~~l 127 (351)
T 3f3f_A 66 ASPEYGR--IIASASYDKTVKLWEEDPDQEECSG-----RRWNKLCTLN-----------DSKGSLYSVKFAPAHLGLKL 127 (351)
T ss_dssp CCGGGCS--EEEEEETTSCEEEEEECTTSCTTSS-----CSEEEEEEEC-----------CCSSCEEEEEECCGGGCSEE
T ss_pred cCCCCCC--EEEEEcCCCeEEEEecCCCcccccc-----cCcceeeeec-----------ccCCceeEEEEcCCCCCcEE
Confidence 99 466 9999999999999998754321100 0001111111 11224899999999 9999
Q ss_pred EEecCCCeEEEEecCCCcEEEEee-------------cCCcceEEEEEcCC---CcEEEEecCCCeEEEEeCCCCce--E
Q 023643 175 FSAAGDSCAYCWDVESSRIKMVFK-------------GHSDYLHCIVARNS---TNQIVTGSEDGTARIWDCKSGKC--I 236 (279)
Q Consensus 175 ~~~~~d~~i~i~d~~~~~~~~~~~-------------~~~~~i~~i~~~~~---~~~l~~~~~d~~i~vwd~~~~~~--~ 236 (279)
++++.|+.|++||+++++.+..+. .|...+.+++|+|+ +.++++++.++.+.+|+...++. +
T Consensus 128 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (351)
T 3f3f_A 128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA 207 (351)
T ss_dssp EEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE
T ss_pred EEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee
Confidence 999999999999999876544332 57788999999997 89999999999998888877765 4
Q ss_pred EEecCCccccccCcceeeeEEEEcCCC----CEEEEEcCcceEEeCC
Q 023643 237 KVIDPVKDKQLKGVISCVSCITLDASE----SWLVRVRATNYVILFS 279 (279)
Q Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~~wd 279 (279)
..+ .+|...|++++|+|++ ++|++|+.||.|++||
T Consensus 208 ~~~--------~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd 246 (351)
T 3f3f_A 208 AKL--------PGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFK 246 (351)
T ss_dssp EEC--------CCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEE
T ss_pred eec--------CCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEe
Confidence 444 6888999999999998 8999999999999996
No 95
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.2e-33 Score=228.22 Aligned_cols=212 Identities=20% Similarity=0.365 Sum_probs=177.3
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.|++||+++.+ .+..+..|...|.+++|++ .++++|+.||.|++||+.+... .
T Consensus 191 ~dg~i~vwd~~~~~--~~~~~~~h~~~v~~l~~~~------~~l~s~s~dg~i~vwd~~~~~~----------------~ 246 (435)
T 1p22_A 191 SDSTVRVWDVNTGE--MLNTLIHHCEAVLHLRFNN------GMMVTCSKDRSIAVWDMASPTD----------------I 246 (435)
T ss_dssp TTSCEEEEESSSCC--EEEEECCCCSCEEEEECCT------TEEEEEETTSCEEEEECSSSSC----------------C
T ss_pred CCCeEEEEECCCCc--EEEEEcCCCCcEEEEEEcC------CEEEEeeCCCcEEEEeCCCCCC----------------c
Confidence 48999999998774 4777888999999999987 5999999999999999987321 1
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
.....+.+|...|.+++| +++ +|++++.||.|++||+++. .....+.++. .
T Consensus 247 ~~~~~~~~~~~~v~~~~~--~~~--~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~----------------------~ 297 (435)
T 1p22_A 247 TLRRVLVGHRAAVNVVDF--DDK--YIVSASGDRTIKVWNTSTC---EFVRTLNGHK----------------------R 297 (435)
T ss_dssp EEEEEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEETTTC---CEEEEEECCS----------------------S
T ss_pred eeeeEecCCCCcEEEEEe--CCC--EEEEEeCCCeEEEEECCcC---cEEEEEcCCC----------------------C
Confidence 112566789999999999 455 9999999999999998653 2222222211 1
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCc------
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGK------ 234 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~------ 234 (279)
.|.++.++ +.++++|+.|+.|++||+++++++..+.+|...|.+++| ++++|++|+.||.|++||+++++
T Consensus 298 ~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 373 (435)
T 1p22_A 298 GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPA 373 (435)
T ss_dssp CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCT
T ss_pred cEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccc
Confidence 36788884 679999999999999999999999999999999999999 68999999999999999997765
Q ss_pred ---eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 235 ---CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 235 ---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
++..+ .+|...|.+++| ++.+|++|+.||.|++||
T Consensus 374 ~~~~~~~~--------~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd 411 (435)
T 1p22_A 374 GTLCLRTL--------VEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 411 (435)
T ss_dssp TTTEEEEE--------CCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred cchheeec--------cCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence 66666 688899999999 688899999999999997
No 96
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.6e-33 Score=226.63 Aligned_cols=234 Identities=19% Similarity=0.186 Sum_probs=182.2
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee-
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG- 79 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~- 79 (279)
.||+|++||+++.. .+..+.+|...|.+++|++. +++.+|++|+.||+|++||+.+...................
T Consensus 181 ~dg~i~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~--~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 256 (464)
T 3v7d_B 181 TDRTVRVWDIKKGC--CTHVFEGHNSTVRCLDIVEY--KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP 256 (464)
T ss_dssp TTSCEEEEETTTTE--EEEEECCCSSCEEEEEEEES--SSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCG
T ss_pred CCCCEEEEECCCCc--EEEEECCCCCccEEEEEecC--CCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeecc
Confidence 48999999998764 47778889999999999842 16789999999999999999876433221111100000000
Q ss_pred ---ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643 80 ---IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL 156 (279)
Q Consensus 80 ---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (279)
......+.+|...|.++. +++. ++++++.||.|++||+++. .....+.++
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~~--~~~~--~l~~~~~d~~i~vwd~~~~---~~~~~~~~~-------------------- 309 (464)
T 3v7d_B 257 EENPYFVGVLRGHMASVRTVS--GHGN--IVVSGSYDNTLIVWDVAQM---KCLYILSGH-------------------- 309 (464)
T ss_dssp GGCTTEEEEECCCSSCEEEEE--EETT--EEEEEETTSCEEEEETTTT---EEEEEECCC--------------------
T ss_pred CCCeEEEEEccCccceEEEEc--CCCC--EEEEEeCCCeEEEEECCCC---cEEEEecCC--------------------
Confidence 112446778999998874 5566 9999999999999998643 222222221
Q ss_pred CCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE
Q 023643 157 SPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI 236 (279)
Q Consensus 157 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~ 236 (279)
...|.+++|+|+++++++|+.|+.|++||+++++++..+.+|...|.+++|+ +++|++++.||.|++||+++++..
T Consensus 310 --~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~ 385 (464)
T 3v7d_B 310 --TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK 385 (464)
T ss_dssp --SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE
T ss_pred --CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCcee
Confidence 1237999999999999999999999999999999999999999999999997 689999999999999999998776
Q ss_pred EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
... .+...+..++|+|++++|++|+ ||.|++||
T Consensus 386 ~~~---------~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd 418 (464)
T 3v7d_B 386 FSY---------HHTNLSAITTFYVSDNILVSGS-ENQFNIYN 418 (464)
T ss_dssp EEE---------ECTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred eee---------cCCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence 665 3445678889999999999998 89999996
No 97
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-33 Score=245.28 Aligned_cols=205 Identities=9% Similarity=0.069 Sum_probs=168.1
Q ss_pred eeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecC
Q 023643 21 REILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYG 100 (279)
Q Consensus 21 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 100 (279)
..+|...|++++|+| ++.+||+|+.||+|+||+..+ .+....+ .|..+|.+++|+|
T Consensus 13 ~~gh~~~V~~lafsp----dg~~lAsgs~Dg~I~lw~~~~-------------------~~~~~~~-~~~~~V~~l~fsp 68 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDF----TQNLLAIATVTGEVHIYGQQQ-------------------VEVVIKL-EDRSAIKEMRFVK 68 (902)
T ss_dssp EEECSSCEEEEEEET----TTTEEEEEETTSEEEEECSTT-------------------CEEEEEC-SSCCCEEEEEEET
T ss_pred ccCCCCCcEEEEECC----CCCEEEEEeCCCEEEEEeCCC-------------------cEEEEEc-CCCCCEEEEEEcC
Confidence 447899999999999 999999999999999999876 2322222 4788999999999
Q ss_pred CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCC
Q 023643 101 GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD 180 (279)
Q Consensus 101 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 180 (279)
++ +|++++.|++|++||+++.. ....+. + ...|++++|+|+++++++|+.|
T Consensus 69 -g~--~L~S~s~D~~v~lWd~~~~~---~~~~~~-~----------------------~~~V~~v~~sp~g~~l~sgs~d 119 (902)
T 2oaj_A 69 -GI--YLVVINAKDTVYVLSLYSQK---VLTTVF-V----------------------PGKITSIDTDASLDWMLIGLQN 119 (902)
T ss_dssp -TT--EEEEEETTCEEEEEETTTCS---EEEEEE-C----------------------SSCEEEEECCTTCSEEEEEETT
T ss_pred -CC--EEEEEECcCeEEEEECCCCc---EEEEEc-C----------------------CCCEEEEEECCCCCEEEEEcCC
Confidence 76 99999999999999987532 111111 0 0137999999999999999999
Q ss_pred CeEEEEecCCCcEE-----------EEeecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCceEEEecCCcc----
Q 023643 181 SCAYCWDVESSRIK-----------MVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKD---- 244 (279)
Q Consensus 181 ~~i~i~d~~~~~~~-----------~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~---- 244 (279)
|.|++||+++++.. ..+++|.++|.+++|+|+ +..+++|+.||.| +||+++++.+..+..+..
T Consensus 120 g~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~ 198 (902)
T 2oaj_A 120 GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAP 198 (902)
T ss_dssp SCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCC
T ss_pred CcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCC
Confidence 99999999988764 234678899999999996 5789999999999 999999999888854310
Q ss_pred ------ccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 245 ------KQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 245 ------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.....|...|.+++|+|+|.+|++|+.||.|++||
T Consensus 199 ~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd 239 (902)
T 2oaj_A 199 GGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWD 239 (902)
T ss_dssp CSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Confidence 01134567899999999999999999999999997
No 98
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.7e-33 Score=225.74 Aligned_cols=222 Identities=17% Similarity=0.232 Sum_probs=174.2
Q ss_pred eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643 19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF 98 (279)
Q Consensus 19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 98 (279)
.....|.+.|++++|+|. ++.+||+++.||.|++|++......... . ....++..+.+|...|.+++|
T Consensus 122 ~~~~~h~~~v~~l~~~p~---~~~~lat~~~dg~V~vwd~~~~~~~~~~----~-----~~~~~~~~~~~h~~~v~~l~~ 189 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQ---NACVIATKTPSSDVLVFDYTKHPSKPEP----S-----GECQPDLRLRGHQKEGYGLSW 189 (430)
T ss_dssp EEEEEESSCCSEEEEETT---EEEEEEEECSSSCEEEEEGGGSCSSCCT----T-----CCCCCSEEEECCSSCCCCEEE
T ss_pred EEEEcCCCcEEEEEECCC---CCcEEEEECCCCcEEEEECCCcccccCc----c-----ccCCCcEEecCCCCCeEEEEe
Confidence 345679999999999992 3789999999999999999763211100 0 003556677899999999999
Q ss_pred cCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC-CCCeEEEe
Q 023643 99 YGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP-QGGAIFSA 177 (279)
Q Consensus 99 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~ 177 (279)
+|++. .+|++++.||.|++|+++........... ...+ ..+...|.+++|+| ++.+|+++
T Consensus 190 ~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------~~~~-----------~~h~~~v~~v~~~p~~~~~l~s~ 250 (430)
T 2xyi_A 190 NPNLN-GYLLSASDDHTICLWDINATPKEHRVIDA-------KNIF-----------TGHTAVVEDVAWHLLHESLFGSV 250 (430)
T ss_dssp CTTST-TEEEEECTTSCEEEEETTSCCBGGGEEEC-------SEEE-----------CCCSSCEEEEEECSSCTTEEEEE
T ss_pred CCCCC-CeEEEEeCCCeEEEEeCCCCCCCCceecc-------ceee-----------cCCCCCEeeeEEeCCCCCEEEEE
Confidence 99875 48999999999999998753221111000 0000 01222489999999 67788999
Q ss_pred cCCCeEEEEecCCC---cEEEEeecCCcceEEEEEcCCCc-EEEEecCCCeEEEEeCCC-CceEEEecCCccccccCcce
Q 023643 178 AGDSCAYCWDVESS---RIKMVFKGHSDYLHCIVARNSTN-QIVTGSEDGTARIWDCKS-GKCIKVIDPVKDKQLKGVIS 252 (279)
Q Consensus 178 ~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~ 252 (279)
+.|+.|++||++++ +.+..+..|...|++++|+|++. +|++|+.||.|++||+++ .+.+..+ ..|..
T Consensus 251 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~--------~~h~~ 322 (430)
T 2xyi_A 251 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF--------ESHKD 322 (430)
T ss_dssp ETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE--------ECCSS
T ss_pred eCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe--------ecCCC
Confidence 99999999999987 57778888999999999999876 789999999999999998 5566776 67888
Q ss_pred eeeEEEEcCCCC-EEEEEcCcceEEeCC
Q 023643 253 CVSCITLDASES-WLVRVRATNYVILFS 279 (279)
Q Consensus 253 ~v~~~~~~~~~~-~l~~~~~d~~i~~wd 279 (279)
.|.+++|+|+++ +|++++.|+.|++||
T Consensus 323 ~v~~i~~sp~~~~~l~s~~~d~~i~iwd 350 (430)
T 2xyi_A 323 EIFQVQWSPHNETILASSGTDRRLHVWD 350 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCCEEEE
T ss_pred CEEEEEECCCCCCEEEEEeCCCcEEEEe
Confidence 999999999985 699999999999996
No 99
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.2e-33 Score=226.01 Aligned_cols=222 Identities=13% Similarity=0.097 Sum_probs=176.9
Q ss_pred CCCceeeeccccccc-----cceeeeeecccceEEEEECCCCCCCC-CEEEEecCCCcEEEEeCCCCCcccccccCCccc
Q 023643 1 MCGDSTNWDEDAYRK-----SILKEREILTRTVFRTVWGPSKDGSP-DTIVIASSDGSITSYSIPSCISKLPLGLSNSKV 74 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 74 (279)
.||.|++||+..... ..+..+.+|...|.+++|+| ++ .+|++++.||.|++||+.+
T Consensus 102 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p----~~~~~l~s~~~dg~i~iwd~~~-------------- 163 (402)
T 2aq5_A 102 EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP----TAQNVLLSAGCDNVILVWDVGT-------------- 163 (402)
T ss_dssp TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECS----SBTTEEEEEETTSCEEEEETTT--------------
T ss_pred CCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECc----CCCCEEEEEcCCCEEEEEECCC--------------
Confidence 489999999887632 34667889999999999999 76 7999999999999999998
Q ss_pred ceeeeccccccc--cCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeee-ccCcccceEEeecCCCCC
Q 023643 75 QQLLGIEPDGFL--HGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINL-QGNHVKPVLDLVNHQHKG 151 (279)
Q Consensus 75 ~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 151 (279)
++.+..+ .+|...|.+++|+|++. +|++++.||.|++||+++. .....+ ..+...
T Consensus 164 -----~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~------------ 221 (402)
T 2aq5_A 164 -----GAAVLTLGPDVHPDTIYSVDWSRDGA--LICTSCRDKRVRVIEPRKG---TVVAEKDRPHEGT------------ 221 (402)
T ss_dssp -----TEEEEEECTTTCCSCEEEEEECTTSS--CEEEEETTSEEEEEETTTT---EEEEEEECSSCSS------------
T ss_pred -----CCccEEEecCCCCCceEEEEECCCCC--EEEEEecCCcEEEEeCCCC---ceeeeeccCCCCC------------
Confidence 5566667 78999999999999998 9999999999999998753 222222 111110
Q ss_pred ccccCCCCCCceeEEEcCCCCeEEEe---cCCCeEEEEecCCCcE-EEEee-cCCcceEEEEEcCCCcEEE-EecCCCeE
Q 023643 152 PWGALSPVPENNAIAVDPQGGAIFSA---AGDSCAYCWDVESSRI-KMVFK-GHSDYLHCIVARNSTNQIV-TGSEDGTA 225 (279)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~l~~~---~~d~~i~i~d~~~~~~-~~~~~-~~~~~i~~i~~~~~~~~l~-~~~~d~~i 225 (279)
.+.++.|+|++.+|++| +.|+.|++||+++++. +.... .|...+.+++|+|++++|+ +|+.||.|
T Consensus 222 ---------~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i 292 (402)
T 2aq5_A 222 ---------RPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSI 292 (402)
T ss_dssp ---------SCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCE
T ss_pred ---------cceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeE
Confidence 26789999999999999 7899999999988654 33332 4677899999999999886 56689999
Q ss_pred EEEeCCCCce-EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 226 RIWDCKSGKC-IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 226 ~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
++||+.+++. +..+.. ..|...|.+++|+|++.++++ .++.+++|+
T Consensus 293 ~i~d~~~~~~~~~~l~~------~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 293 RYFEITSEAPFLHYLSM------FSSKESQRGMGYMPKRGLEVN--KCEIARFYK 339 (402)
T ss_dssp EEEEECSSTTCEEEEEE------ECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred EEEEecCCCcceEeecc------cccCCcccceEEeccccccee--cceeEEEEE
Confidence 9999998874 444422 135688999999999998775 566888885
No 100
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=8.2e-33 Score=232.36 Aligned_cols=231 Identities=12% Similarity=0.117 Sum_probs=188.5
Q ss_pred CCceeeecccccc--ccceeeeeecccc-eEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643 2 CGDSTNWDEDAYR--KSILKEREILTRT-VFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL 78 (279)
Q Consensus 2 dG~v~iw~~~~~~--~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 78 (279)
+|.|++||+++.. ......+.+|... |.+++|+|. .++++|++++.||.|++||+.++..... .
T Consensus 38 ~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~--~~~~~l~s~~~dg~v~vw~~~~~~~~~~-----------~ 104 (615)
T 1pgu_A 38 GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPI--KGSQYLCSGDESGKVIVWGWTFDKESNS-----------V 104 (615)
T ss_dssp TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSS--TTCCEEEEEETTSEEEEEEEEEEGGGTE-----------E
T ss_pred CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcC--CCCCEEEEecCCCEEEEEeCCCCccccc-----------c
Confidence 6789999988651 1246678889999 999999981 1478999999999999999975210000 0
Q ss_pred eccccccccCCccCeEEEEecCCCCceEEEEeeCC----CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccc
Q 023643 79 GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDD----GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWG 154 (279)
Q Consensus 79 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (279)
.......+..|..+|.+++|+|+++ +|++++.+ +.|++||.. .....+.++
T Consensus 105 ~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d~~-----~~~~~~~~~------------------ 159 (615)
T 1pgu_A 105 EVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWDSG-----NSLGEVSGH------------------ 159 (615)
T ss_dssp EEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETTTC-----CEEEECCSC------------------
T ss_pred cccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEECC-----CcceeeecC------------------
Confidence 0355567778999999999999998 99999988 789999832 122222221
Q ss_pred cCCCCCCceeEEEcCCCC-eEEEecCCCeEEEEecCCCcEEEEeecCCc---ceEEEEEcCC-CcEEEEecCCCeEEEEe
Q 023643 155 ALSPVPENNAIAVDPQGG-AIFSAAGDSCAYCWDVESSRIKMVFKGHSD---YLHCIVARNS-TNQIVTGSEDGTARIWD 229 (279)
Q Consensus 155 ~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~i~~i~~~~~-~~~l~~~~~d~~i~vwd 229 (279)
...|.+++|+|+++ .+++++.|+.|++||+.+++.+..+.+|.. .|.+++|+|+ +++|++++.||.|++||
T Consensus 160 ----~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 235 (615)
T 1pgu_A 160 ----SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 235 (615)
T ss_dssp ----SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred ----CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 12479999999998 799999999999999999999999999999 9999999999 99999999999999999
Q ss_pred CCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 230 CKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+++++.+..+.... ..|...|.+++|+ ++.+|++++.|+.|++||
T Consensus 236 ~~~~~~~~~~~~~~----~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd 280 (615)
T 1pgu_A 236 GKSGEFLKYIEDDQ----EPVQGGIFALSWL-DSQKFATVGADATIRVWD 280 (615)
T ss_dssp TTTCCEEEECCBTT----BCCCSCEEEEEES-SSSEEEEEETTSEEEEEE
T ss_pred CCCCCEeEEecccc----cccCCceEEEEEc-CCCEEEEEcCCCcEEEEE
Confidence 99999988873100 1788899999999 999999999999999996
No 101
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.1e-33 Score=220.59 Aligned_cols=215 Identities=13% Similarity=0.147 Sum_probs=164.5
Q ss_pred cceeeeeecccceEEEEECCCCCCC---CCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccC
Q 023643 16 SILKEREILTRTVFRTVWGPSKDGS---PDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGP 92 (279)
Q Consensus 16 ~~~~~~~~~~~~v~~~~~~~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 92 (279)
..+..+.+|.+.|++++|+| + +++|++|+.||.|++|++.+.. ......+.+|.++
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~----~~~~g~~l~~~~~dg~i~iw~~~~~~-----------------~~~~~~~~~h~~~ 88 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSP----PTLPGNFLIAGSWANDVRCWEVQDSG-----------------QTIPKAQQMHTGP 88 (368)
T ss_dssp CCEECSSCCSSCEEEEEECC----TTSSSEEEEEEETTSEEEEEEECTTS-----------------CEEEEEEEECSSC
T ss_pred ceeEeccCCCCceEEEEEcC----CCCCceEEEEECCCCcEEEEEcCCCC-----------------ceeEEEeccccCC
Confidence 44667889999999999999 6 6999999999999999998631 2223567789999
Q ss_pred eEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEE--cCC
Q 023643 93 AYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAV--DPQ 170 (279)
Q Consensus 93 v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~ 170 (279)
|.+++|+|+++ +|++++.||.|++||+++... . .... +...|.+++| +|+
T Consensus 89 v~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~---~-~~~~----------------------~~~~v~~~~~~~~~~ 140 (368)
T 3mmy_A 89 VLDVCWSDDGS--KVFTASCDKTAKMWDLSSNQA---I-QIAQ----------------------HDAPVKTIHWIKAPN 140 (368)
T ss_dssp EEEEEECTTSS--EEEEEETTSEEEEEETTTTEE---E-EEEE----------------------CSSCEEEEEEEECSS
T ss_pred EEEEEECcCCC--EEEEEcCCCcEEEEEcCCCCc---e-eecc----------------------ccCceEEEEEEeCCC
Confidence 99999999998 999999999999999875321 1 1111 1124789999 899
Q ss_pred CCeEEEecCCCeEEEEecCCCcEEEEeecCC-----------------------------------------cceEEEEE
Q 023643 171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHS-----------------------------------------DYLHCIVA 209 (279)
Q Consensus 171 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----------------------------------------~~i~~i~~ 209 (279)
+.+|++++.|+.|++||+++++++..+..+. ..+.++++
T Consensus 141 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (368)
T 3mmy_A 141 YSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAI 220 (368)
T ss_dssp CEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEE
T ss_pred CCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEE
Confidence 9999999999999999999887766665432 22344444
Q ss_pred cCCCc----EEEEecCCCeEEEEeCCCC---ceEEEecCCcc----ccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 210 RNSTN----QIVTGSEDGTARIWDCKSG---KCIKVIDPVKD----KQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 210 ~~~~~----~l~~~~~d~~i~vwd~~~~---~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
.++.. .+++++.||.|++||++.. +.+..+..+.. .....|...|++++|+|++++|++|+.||.|++|
T Consensus 221 ~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw 300 (368)
T 3mmy_A 221 FKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW 300 (368)
T ss_dssp EECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred cccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEE
Confidence 44333 2999999999999999887 45556632210 0011222379999999999999999999999999
Q ss_pred C
Q 023643 279 S 279 (279)
Q Consensus 279 d 279 (279)
|
T Consensus 301 d 301 (368)
T 3mmy_A 301 D 301 (368)
T ss_dssp E
T ss_pred E
Confidence 6
No 102
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=242.11 Aligned_cols=207 Identities=17% Similarity=0.268 Sum_probs=170.7
Q ss_pred eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643 19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF 98 (279)
Q Consensus 19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 98 (279)
..+.+|.+.|++++|+| ++++|++|+.||+|++|++.... ......+.+|.++|.+++|
T Consensus 3 ~~l~gH~~~V~~l~~s~----dg~~latg~~dg~I~vwd~~~~~-----------------~~~~~~l~~h~~~V~~l~~ 61 (753)
T 3jro_A 3 VIANAHNELIHDAVLDY----YGKRLATCSSDKTIKIFEVEGET-----------------HKLIDTLTGHEGPVWRVDW 61 (753)
T ss_dssp -----CCCCEEEECCCS----SSCCEEEEETTTEEEEEEEETTE-----------------EEEEEEECCCSSCEEEEEE
T ss_pred eecccCcceeEEEEECC----CCCeEEEEECCCcEEEEecCCCC-----------------CccceeccCCcCceEEEEe
Confidence 45678999999999999 89999999999999999997421 4566778899999999999
Q ss_pred cCC--CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC--CCeE
Q 023643 99 YGG--NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ--GGAI 174 (279)
Q Consensus 99 ~~~--~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l 174 (279)
+|+ +. +|++|+.||.|++||+++.. ........+ +...|.+++|+|+ +..+
T Consensus 62 s~~~~~~--~l~s~s~Dg~I~vwd~~~~~-~~~~~~~~~----------------------h~~~V~~v~~sp~~~~~~l 116 (753)
T 3jro_A 62 AHPKFGT--ILASCSYDGKVLIWKEENGR-WSQIAVHAV----------------------HSASVNSVQWAPHEYGPLL 116 (753)
T ss_dssp CCTTSCS--EEEEEETTSCEEEEEEETTE-EEEEEEECC----------------------CSSCEEEEEECCGGGCSEE
T ss_pred cCCCCCC--EEEEEeCCCeEEEEECCCCc-ccccccccC----------------------CCCCeEEEEECCCCCCCEE
Confidence 988 66 99999999999999986431 011111211 1124799999999 9999
Q ss_pred EEecCCCeEEEEecCCC--cEEEEeecCCcceEEEEEcC-------------CCcEEEEecCCCeEEEEeCCCCc----e
Q 023643 175 FSAAGDSCAYCWDVESS--RIKMVFKGHSDYLHCIVARN-------------STNQIVTGSEDGTARIWDCKSGK----C 235 (279)
Q Consensus 175 ~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~i~~i~~~~-------------~~~~l~~~~~d~~i~vwd~~~~~----~ 235 (279)
++|+.||.|++||++++ .....+.+|...|.+++|+| ++.++++|+.||.|++||++++. .
T Consensus 117 ~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~ 196 (753)
T 3jro_A 117 LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL 196 (753)
T ss_dssp EEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEE
T ss_pred EEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccccee
Confidence 99999999999999877 34456678999999999999 58999999999999999998873 4
Q ss_pred EEEecCCccccccCcceeeeEEEEcCC---CCEEEEEcCcceEEeCC
Q 023643 236 IKVIDPVKDKQLKGVISCVSCITLDAS---ESWLVRVRATNYVILFS 279 (279)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~~wd 279 (279)
...+ .+|...|++++|+|+ +.+|++|+.||.|++||
T Consensus 197 ~~~~--------~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 197 ESTL--------EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp EEEE--------CCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred eeee--------cCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 4444 688899999999999 89999999999999996
No 103
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.4e-33 Score=241.23 Aligned_cols=207 Identities=14% Similarity=0.260 Sum_probs=181.0
Q ss_pred cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEE
Q 023643 16 SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYD 95 (279)
Q Consensus 16 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 95 (279)
...+.+.+|.+.|.+++|+| ++.+||+++.||.|++||+.+ ++.+..+.+|.++|.+
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp----~~~~la~~~~~g~v~iwd~~~-------------------~~~~~~~~~~~~~v~~ 60 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHP----TEPWVLTTLYSGRVEIWNYET-------------------QVEVRSIQVTETPVRA 60 (814)
T ss_dssp CCEEEEEEECSCEEEEEECS----SSSEEEEEETTSEEEEEETTT-------------------TEEEEEEECCSSCEEE
T ss_pred ccceeeecCCCceEEEEECC----CCCEEEEEeCCCEEEEEECCC-------------------CceEEEEecCCCcEEE
Confidence 44667889999999999999 999999999999999999988 5667788899999999
Q ss_pred EEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEE
Q 023643 96 VKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF 175 (279)
Q Consensus 96 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 175 (279)
++|+|+++ +|++++.||.|++||+++. .....+.++ ...|++++|+|++++|+
T Consensus 61 ~~~s~~~~--~l~~~~~dg~i~vw~~~~~---~~~~~~~~~----------------------~~~v~~~~~s~~~~~l~ 113 (814)
T 3mkq_A 61 GKFIARKN--WIIVGSDDFRIRVFNYNTG---EKVVDFEAH----------------------PDYIRSIAVHPTKPYVL 113 (814)
T ss_dssp EEEEGGGT--EEEEEETTSEEEEEETTTC---CEEEEEECC----------------------SSCEEEEEECSSSSEEE
T ss_pred EEEeCCCC--EEEEEeCCCeEEEEECCCC---cEEEEEecC----------------------CCCEEEEEEeCCCCEEE
Confidence 99999998 9999999999999998653 222222221 12379999999999999
Q ss_pred EecCCCeEEEEecCCC-cEEEEeecCCcceEEEEEcC-CCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCccee
Q 023643 176 SAAGDSCAYCWDVESS-RIKMVFKGHSDYLHCIVARN-STNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISC 253 (279)
Q Consensus 176 ~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 253 (279)
+++.|+.|++||++++ .....+.+|...|.+++|+| +++.|++++.||.|++||+.+++....+. ..+...
T Consensus 114 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-------~~~~~~ 186 (814)
T 3mkq_A 114 SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-------TGQERG 186 (814)
T ss_dssp EEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEE-------CCCTTC
T ss_pred EEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEe-------cCCCCC
Confidence 9999999999999987 77788889999999999999 88999999999999999999888877773 234478
Q ss_pred eeEEEEcC--CCCEEEEEcCcceEEeCC
Q 023643 254 VSCITLDA--SESWLVRVRATNYVILFS 279 (279)
Q Consensus 254 v~~~~~~~--~~~~l~~~~~d~~i~~wd 279 (279)
+.+++|+| ++.+|++++.||.|++||
T Consensus 187 v~~~~~~~~~~~~~l~~~~~dg~i~~~d 214 (814)
T 3mkq_A 187 VNYVDYYPLPDKPYMITASDDLTIKIWD 214 (814)
T ss_dssp CCEEEECCSTTCCEEEEECTTSEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 99999999 999999999999999996
No 104
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.6e-32 Score=222.26 Aligned_cols=209 Identities=21% Similarity=0.298 Sum_probs=180.0
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.|++||+++. ..+..+.+|...|.+++|++ ++|++|+.||+|++||+.+ +
T Consensus 137 ~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~------~~l~s~~~dg~i~vwd~~~-------------------~ 189 (445)
T 2ovr_B 137 DDNTLKVWSAVTG--KCLRTLVGHTGGVWSSQMRD------NIIISGSTDRTLKVWNAET-------------------G 189 (445)
T ss_dssp TTSCEEEEETTTC--CEEEECCCCSSCEEEEEEET------TEEEEEETTSCEEEEETTT-------------------T
T ss_pred CCCcEEEEECCCC--cEEEEEcCCCCCEEEEEecC------CEEEEEeCCCeEEEEECCc-------------------C
Confidence 4899999998876 44778889999999999976 6999999999999999998 5
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
+.+..+.+|...|.++.|++ + .+++++.||.|++||+++. .....+.++ ..
T Consensus 190 ~~~~~~~~h~~~v~~~~~~~--~--~l~s~s~dg~i~~wd~~~~---~~~~~~~~~----------------------~~ 240 (445)
T 2ovr_B 190 ECIHTLYGHTSTVRCMHLHE--K--RVVSGSRDATLRVWDIETG---QCLHVLMGH----------------------VA 240 (445)
T ss_dssp EEEEEECCCSSCEEEEEEET--T--EEEEEETTSEEEEEESSSC---CEEEEEECC----------------------SS
T ss_pred cEEEEECCCCCcEEEEEecC--C--EEEEEeCCCEEEEEECCCC---cEEEEEcCC----------------------cc
Confidence 66778889999999999964 3 8999999999999998653 222222221 11
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
.|.++++ ++.++++++.|+.|++||+++++++..+.+|...|.+++| ++.++++++.|+.|++||+++++.+..+
T Consensus 241 ~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~- 315 (445)
T 2ovr_B 241 AVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL- 315 (445)
T ss_dssp CEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEE-
T ss_pred cEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEE-
Confidence 3788888 6789999999999999999999999999999999999999 7899999999999999999999999888
Q ss_pred CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+|...+.++.++ +.+|++|+.||.|++||
T Consensus 316 -------~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd 345 (445)
T 2ovr_B 316 -------TGHQSLTSGMELK--DNILVSGNADSTVKIWD 345 (445)
T ss_dssp -------CCCCSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred -------cCCcccEEEEEEe--CCEEEEEeCCCeEEEEE
Confidence 6777888888774 67999999999999996
No 105
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6.9e-33 Score=218.55 Aligned_cols=184 Identities=11% Similarity=0.059 Sum_probs=144.3
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||+|+|||+++... +..+. |..+|.+++|+| ++++|++++.+ .+++|+..++. .
T Consensus 155 ~d~~i~iwd~~~~~~--~~~~~-~~~~V~~v~fsp----dg~~l~s~s~~-~~~~~~~~~~~-----------------~ 209 (365)
T 4h5i_A 155 VPAIMRIIDPSDLTE--KFEIE-TRGEVKDLHFST----DGKVVAYITGS-SLEVISTVTGS-----------------C 209 (365)
T ss_dssp SSCEEEEEETTTTEE--EEEEE-CSSCCCEEEECT----TSSEEEEECSS-CEEEEETTTCC-----------------E
T ss_pred CCCEEEEeECCCCcE--EEEeC-CCCceEEEEEcc----CCceEEeccce-eEEEEEeccCc-----------------c
Confidence 378999999988643 44454 778899999999 99999999865 46666665531 1
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCC----cEEEeecCCCccCcc-eeeeccCcccceEEeecCCCCCcccc
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDG----RICGWRWKEFTESKV-PINLQGNHVKPVLDLVNHQHKGPWGA 155 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg----~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (279)
........|...|.+++|+|++. ++++++.|+ .+++|++........ ...+.+
T Consensus 210 ~~~~~~~~~~~~v~~v~fspdg~--~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~-------------------- 267 (365)
T 4h5i_A 210 IARKTDFDKNWSLSKINFIADDT--VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTN-------------------- 267 (365)
T ss_dssp EEEECCCCTTEEEEEEEEEETTE--EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEES--------------------
T ss_pred eeeeecCCCCCCEEEEEEcCCCC--EEEEEecCCcceeEEeecccccceecceeeeeecC--------------------
Confidence 11234456889999999999998 999999887 578888653211111 111111
Q ss_pred CCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEe-ecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC
Q 023643 156 LSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVF-KGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG 233 (279)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~ 233 (279)
+...|++++|+|++++|++|+.|+.|++||+++++++..+ ++|..+|++++|+|+|++|++||.|++|+|||+...
T Consensus 268 --~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 268 --RFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp --SCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred --CCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 1124799999999999999999999999999999999875 789999999999999999999999999999999753
No 106
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-32 Score=220.51 Aligned_cols=216 Identities=12% Similarity=0.081 Sum_probs=163.5
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
||.++.|++...+...+..+ .|...|.+++|+| +|.+||+++.||+|++|+...
T Consensus 63 dg~~~~~~~~~~~~~~~~~~-~~~~~V~~vawSP----dG~~LAs~s~dg~V~iwd~~~--------------------- 116 (588)
T 2j04_A 63 LEFENKLDFELAQQNGLLNS-QPVCYPRVCKPSP----IDDWMAVLSNNGNVSVFKDNK--------------------- 116 (588)
T ss_dssp CCCCCTTTTSCCCSSCSSTT-SCSCCEEEEEECS----SSSCEEEEETTSCEEEEETTE---------------------
T ss_pred CCCcceEEEEeCCCceEeec-CCCCcEEEEEECC----CCCEEEEEeCCCcEEEEeCCc---------------------
Confidence 34455555444332223233 3578899999999 999999999999999999543
Q ss_pred ccccccCCcc-----CeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCc----ceeeeccCcccceEEeecCCCCCc
Q 023643 82 PDGFLHGHDG-----PAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESK----VPINLQGNHVKPVLDLVNHQHKGP 152 (279)
Q Consensus 82 ~~~~~~~h~~-----~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 152 (279)
.+..+. |.. .|.+++|+|+++ +|++|+.||+|++||++...... ....+..+. .
T Consensus 117 ~l~~l~-~~~~~~~~sv~svafSPDG~--~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~---------~----- 179 (588)
T 2j04_A 117 MLTNLD-SKGNLSSRTYHCFEWNPIES--SIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSD---------A----- 179 (588)
T ss_dssp EEEECC-CSSCSTTTCEEEEEECSSSS--CEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSC---------T-----
T ss_pred eeeecc-CCCccccccEEEEEEcCCCC--EEEEEcCCCEEEEEECCCCccccccceeeeeeeccc---------c-----
Confidence 223344 444 599999999998 99999999999999987532101 112221100 0
Q ss_pred cccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcE---EEEee-cCCcceEEEEEcCCCcEEEEecCCCeEEEE
Q 023643 153 WGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRI---KMVFK-GHSDYLHCIVARNSTNQIVTGSEDGTARIW 228 (279)
Q Consensus 153 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~vw 228 (279)
.+...|.+++|+|++ +++++.|+.|++||+..++. .++++ +|...|.+++|+ ++.|++++ +++|++|
T Consensus 180 ----gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLW 250 (588)
T 2j04_A 180 ----GSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKI 250 (588)
T ss_dssp ----TCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEE
T ss_pred ----cccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEE
Confidence 011248999999998 88888899999999988763 45664 788999999999 68999887 6999999
Q ss_pred eCCCCceEEEecCCccccccCcceeeeEEEE--cCCCCEEEEEcCcceEEeC
Q 023643 229 DCKSGKCIKVIDPVKDKQLKGVISCVSCITL--DASESWLVRVRATNYVILF 278 (279)
Q Consensus 229 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~~w 278 (279)
|+..++..... .+|...|..++| +|++..|++++.||+ ++|
T Consensus 251 d~~~~~~~~~~--------~gh~~~V~~va~~~s~d~~~La~a~edG~-klw 293 (588)
T 2j04_A 251 DLKNYSISSLK--------TGSLENFHIIPLNHEKESTILLMSNKTSY-KVL 293 (588)
T ss_dssp ETTTTEEEEEE--------CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEE
T ss_pred ECCCCeEEEEE--------cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEE
Confidence 99887774433 478999999999 999999999999999 887
No 107
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.2e-31 Score=217.17 Aligned_cols=212 Identities=20% Similarity=0.319 Sum_probs=180.3
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.|++||+++. ..+..+.+|...|.+++|++ +.+++|+.||+|++||+.+ +
T Consensus 177 ~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~------~~l~s~s~dg~i~~wd~~~-------------------~ 229 (445)
T 2ovr_B 177 TDRTLKVWNAETG--ECIHTLYGHTSTVRCMHLHE------KRVVSGSRDATLRVWDIET-------------------G 229 (445)
T ss_dssp TTSCEEEEETTTT--EEEEEECCCSSCEEEEEEET------TEEEEEETTSEEEEEESSS-------------------C
T ss_pred CCCeEEEEECCcC--cEEEEECCCCCcEEEEEecC------CEEEEEeCCCEEEEEECCC-------------------C
Confidence 4899999999876 44777889999999999966 6799999999999999998 5
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
+.+..+.+|..+|.+++| ++. ++++++.||.|++||+++. .....+.++. .
T Consensus 230 ~~~~~~~~~~~~v~~~~~--~~~--~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~----------------------~ 280 (445)
T 2ovr_B 230 QCLHVLMGHVAAVRCVQY--DGR--RVVSGAYDFMVKVWDPETE---TCLHTLQGHT----------------------N 280 (445)
T ss_dssp CEEEEEECCSSCEEEEEE--CSS--CEEEEETTSCEEEEEGGGT---EEEEEECCCS----------------------S
T ss_pred cEEEEEcCCcccEEEEEE--CCC--EEEEEcCCCEEEEEECCCC---cEeEEecCCC----------------------C
Confidence 667778899999999999 455 8999999999999998643 2222222211 1
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
.|.++.| ++.++++++.|+.|++||+++++.+..+.+|...+.++.++ ++++++++.||.|++||+++++.+..+.
T Consensus 281 ~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 356 (445)
T 2ovr_B 281 RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQ 356 (445)
T ss_dssp CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 3688888 77899999999999999999999999999999999988875 6799999999999999999999999885
Q ss_pred CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+ ..|...|.+++|+ +++|++|+.||.|++||
T Consensus 357 ~~-----~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 357 GP-----NKHQSAVTCLQFN--KNFVITSSDDGTVKLWD 388 (445)
T ss_dssp ST-----TSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred cC-----CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence 43 3588899999996 68999999999999996
No 108
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.8e-32 Score=243.70 Aligned_cols=211 Identities=15% Similarity=0.211 Sum_probs=180.2
Q ss_pred eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643 19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF 98 (279)
Q Consensus 19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 98 (279)
..+.+|.+.|++++|+| ++++||+|+.||+|++||+.+ ++.+..+.+|.+.|.+++|
T Consensus 609 ~~~~~h~~~v~~~~~s~----~~~~l~s~~~d~~i~vw~~~~-------------------~~~~~~~~~h~~~v~~~~~ 665 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQ----DGQRIASCGADKTLQVFKAET-------------------GEKLLDIKAHEDEVLCCAF 665 (1249)
T ss_dssp EEECCCSSCEEEEEECT----TSSEEEEEETTSCEEEEETTT-------------------CCEEEEECCCSSCEEEEEE
T ss_pred EEEecccccEEEEEECC----CCCEEEEEeCCCeEEEEECCC-------------------CCEEEEeccCCCCEEEEEE
Confidence 35678999999999999 999999999999999999998 6667788899999999999
Q ss_pred cCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC--CCCeEEE
Q 023643 99 YGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP--QGGAIFS 176 (279)
Q Consensus 99 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~ 176 (279)
+|+++ +|++++.|+.|++||+.+. .....+.++. ..|.+++|+| ++..+++
T Consensus 666 s~~~~--~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~----------------------~~v~~~~~~~~~~~~~l~s 718 (1249)
T 3sfz_A 666 SSDDS--YIATCSADKKVKIWDSATG---KLVHTYDEHS----------------------EQVNCCHFTNKSNHLLLAT 718 (1249)
T ss_dssp CTTSS--EEEEEETTSEEEEEETTTC---CEEEEEECCS----------------------SCEEEEEECSSSSCCEEEE
T ss_pred ecCCC--EEEEEeCCCeEEEEECCCC---ceEEEEcCCC----------------------CcEEEEEEecCCCceEEEE
Confidence 99998 9999999999999998653 2222332211 2378999999 4558999
Q ss_pred ecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCcc------------
Q 023643 177 AAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKD------------ 244 (279)
Q Consensus 177 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~------------ 244 (279)
++.|+.|++||+++++++..+.+|...|.+++|+|+++++++++.||.|++||+++++....+.....
T Consensus 719 g~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1249)
T 3sfz_A 719 GSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVE 798 (1249)
T ss_dssp EETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCC
T ss_pred EeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999998876665532110
Q ss_pred -----------------------------------ccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 245 -----------------------------------KQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 245 -----------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
....+|...|.+++|+|+++++++++.||.|++||
T Consensus 799 ~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd 868 (1249)
T 3sfz_A 799 VIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWN 868 (1249)
T ss_dssp CCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEE
T ss_pred ceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 01126778899999999999999999999999996
No 109
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=2.1e-32 Score=215.07 Aligned_cols=228 Identities=12% Similarity=0.093 Sum_probs=153.6
Q ss_pred eeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccc
Q 023643 7 NWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFL 86 (279)
Q Consensus 7 iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (279)
||+++.. ..+.....|...|.+++|+| ++++||+|+.++ +++|++.+. +.....
T Consensus 3 i~s~~~~--~~~~~~~~h~~~V~~v~fs~----dg~~la~g~~~~-~~iw~~~~~-------------------~~~~~~ 56 (355)
T 3vu4_A 3 LGSMITR--NPIVPENHVSNPVTDYEFNQ----DQSCLILSTLKS-FEIYNVHPV-------------------AHIMSQ 56 (355)
T ss_dssp ------------------CCCCCEEEECT----TSSEEEEECSSE-EEEEEETTE-------------------EEEEEE
T ss_pred ccccccc--CCccccccCCCceEEEEECC----CCCEEEEEcCCE-EEEEecCCc-------------------ceeeee
Confidence 4555544 33556788999999999999 999999998775 789998862 222222
Q ss_pred cCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCC-----------------C
Q 023643 87 HGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQ-----------------H 149 (279)
Q Consensus 87 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~ 149 (279)
. ...+..+.+.++++ .++++++.|++|++||+++... ...+.. ..++..+.... .
T Consensus 57 ~--~~~~~~~~~~~~~~-~~~~~~~~d~~v~iWd~~~~~~---~~~~~~--~~~v~~v~~~~~~~~~~~~~~i~i~d~~~ 128 (355)
T 3vu4_A 57 E--MRHLSKVRMLHRTN-YVAFVTGVKEVVHIWDDVKKQD---VSRIKV--DAPVKDLFLSREFIVVSYGDVISVFKFGN 128 (355)
T ss_dssp E--CSCCCEEEECTTSS-EEEEECSSTTEEEEEETTTTEE---EEEEEC--SSCEEEEEECSSEEEEEETTEEEEEESST
T ss_pred e--cCCeEEEEEcCCCC-EEEEEECCccEEEEEECCCCcE---EEEEEC--CCceEEEEEcCCEEEEEEcCEEEEEECCC
Confidence 1 12477788888876 2346788899999999875422 111111 11121111110 0
Q ss_pred C-CccccCCCCCCceeEEEcCCCCeEEE--ecCCCeEEEEecCCCc---------------E-EEEeecCCcceEEEEEc
Q 023643 150 K-GPWGALSPVPENNAIAVDPQGGAIFS--AAGDSCAYCWDVESSR---------------I-KMVFKGHSDYLHCIVAR 210 (279)
Q Consensus 150 ~-~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~---------------~-~~~~~~~~~~i~~i~~~ 210 (279)
. ........ ....+++++ .++++ |+.||.|++||+.+++ + +..+.+|...|.+++|+
T Consensus 129 ~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s 204 (355)
T 3vu4_A 129 PWKRITDDIR--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLN 204 (355)
T ss_dssp TCCBSSCCEE--EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEEC
T ss_pred CceeeEEecc--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEEC
Confidence 0 00000000 233455666 45555 6889999999999765 2 67889999999999999
Q ss_pred CCCcEEEEecCCCe-EEEEeCCCCceEEEecCCccccccC-cceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 211 NSTNQIVTGSEDGT-ARIWDCKSGKCIKVIDPVKDKQLKG-VISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 211 ~~~~~l~~~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
|++++|++|+.|++ |++||+++++++..+. .+ |...|.+++|+|++++|++++.|++|++||
T Consensus 205 ~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~-------~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 205 RKSDMVATCSQDGTIIRVFKTEDGVLVREFR-------RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFE 268 (355)
T ss_dssp TTSSEEEEEETTCSEEEEEETTTCCEEEEEE-------CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCcEEEEEE-------cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence 99999999999998 9999999999999883 24 889999999999999999999999999996
No 110
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.3e-31 Score=209.51 Aligned_cols=218 Identities=14% Similarity=0.096 Sum_probs=174.8
Q ss_pred CCCceeeecc-ccccccceeeeee--cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccccee
Q 023643 1 MCGDSTNWDE-DAYRKSILKEREI--LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQL 77 (279)
Q Consensus 1 ~dG~v~iw~~-~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 77 (279)
.||.|++||+ ++.. ...+.. |...|.+++|+| +.+|++++.|+.|++||+.+..... ..
T Consensus 77 ~dg~i~~wd~~~~~~---~~~~~~~~~~~~v~~l~~~~-----~~~l~s~~~d~~i~iwd~~~~~~~~----------~~ 138 (342)
T 1yfq_A 77 VQGEILKVDLIGSPS---FQALTNNEANLGICRICKYG-----DDKLIAASWDGLIEVIDPRNYGDGV----------IA 138 (342)
T ss_dssp TTSCEEEECSSSSSS---EEECBSCCCCSCEEEEEEET-----TTEEEEEETTSEEEEECHHHHTTBC----------EE
T ss_pred CCCeEEEEEeccCCc---eEeccccCCCCceEEEEeCC-----CCEEEEEcCCCeEEEEccccccccc----------cc
Confidence 4899999999 7753 356677 999999999998 5789999999999999987510000 00
Q ss_pred eeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCC-CccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643 78 LGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKE-FTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL 156 (279)
Q Consensus 78 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (279)
...+++..+. |...|.+++|+|+ .+++++.|+.|++||++. ..... ...... +
T Consensus 139 ~~~~~~~~~~-~~~~v~~~~~~~~----~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~-~------------------- 192 (342)
T 1yfq_A 139 VKNLNSNNTK-VKNKIFTMDTNSS----RLIVGMNNSQVQWFRLPLCEDDNG-TIEESG-L------------------- 192 (342)
T ss_dssp EEESCSSSSS-SCCCEEEEEECSS----EEEEEESTTEEEEEESSCCTTCCC-EEEECS-C-------------------
T ss_pred ccCCeeeEEe-eCCceEEEEecCC----cEEEEeCCCeEEEEECCccccccc-eeeecC-C-------------------
Confidence 0023344454 8899999999986 499999999999999875 22111 111111 1
Q ss_pred CCCCCceeEEEcC-CCCeEEEecCCCeEEEEecCCC------cEEEEeecCCc---------ceEEEEEcCCCcEEEEec
Q 023643 157 SPVPENNAIAVDP-QGGAIFSAAGDSCAYCWDVESS------RIKMVFKGHSD---------YLHCIVARNSTNQIVTGS 220 (279)
Q Consensus 157 ~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~---------~i~~i~~~~~~~~l~~~~ 220 (279)
...+.+++|+| +++++++++.||.|++||++.. +....+..|.. .|.+++|+|++++|++++
T Consensus 193 --~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 270 (342)
T 1yfq_A 193 --KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG 270 (342)
T ss_dssp --SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE
T ss_pred --CCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEec
Confidence 11378999999 9999999999999999999887 78888888865 999999999999999999
Q ss_pred CCCeEEEEeCCCCceEEEecCCccccccCc-ceeeeEEEEcCCCCEEEEEcCcce
Q 023643 221 EDGTARIWDCKSGKCIKVIDPVKDKQLKGV-ISCVSCITLDASESWLVRVRATNY 274 (279)
Q Consensus 221 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~ 274 (279)
.||.|++||+++++.+..+ .+| ...|.+++ |++++|++|+.||.
T Consensus 271 ~dg~i~vwd~~~~~~~~~~--------~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 271 SDGIISCWNLQTRKKIKNF--------AKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp TTSCEEEEETTTTEEEEEC--------CCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred CCceEEEEcCccHhHhhhh--------hcccCCCceEec--CCCCeEEEEecCCc
Confidence 9999999999999999888 576 88999999 99999999999997
No 111
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=7.6e-32 Score=211.96 Aligned_cols=204 Identities=15% Similarity=0.191 Sum_probs=161.9
Q ss_pred eeeeeecccceEEEEECCCCCCCCC-EEEEecC---CCcEEEEeCCCCCcccccccCCcccceeeecccccc-ccCCccC
Q 023643 18 LKEREILTRTVFRTVWGPSKDGSPD-TIVIASS---DGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGF-LHGHDGP 92 (279)
Q Consensus 18 ~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~ 92 (279)
.....+|...|.+++|+| ++. ++++|+. ||.|++|++.+. +.... ..+|..+
T Consensus 11 ~~~~~~h~~~v~~~~~~p----~~~~l~~~~s~~~~d~~v~iw~~~~~-------------------~~~~~~~~~~~~~ 67 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVP----CSAKFVTMGNFARGTGVIQLYEIQHG-------------------DLKLLREIEKAKP 67 (357)
T ss_dssp EEEEEECSSCEEEEEECT----TSSEEEEEEC--CCCEEEEEEEECSS-------------------SEEEEEEEEESSC
T ss_pred hhhccCCCCceEEEEEcC----CCceEEEecCccCCCcEEEEEeCCCC-------------------cccceeeecccCc
Confidence 345577999999999999 675 5556666 999999999873 22222 2368899
Q ss_pred eEEEEecCC---CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeE----
Q 023643 93 AYDVKFYGG---NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAI---- 165 (279)
Q Consensus 93 v~~~~~~~~---~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---- 165 (279)
|.+++|+|+ +. +|++++.||.|++||++.... ....+.++ . ..|.++
T Consensus 68 v~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~-~---------------------~~v~~~~~~~ 121 (357)
T 3i2n_A 68 IKCGTFGATSLQQR--YLATGDFGGNLHIWNLEAPEM--PVYSVKGH-K---------------------EIINAIDGIG 121 (357)
T ss_dssp EEEEECTTCCTTTC--CEEEEETTSCEEEECTTSCSS--CSEEECCC-S---------------------SCEEEEEEES
T ss_pred EEEEEEcCCCCCCc--eEEEecCCCeEEEEeCCCCCc--cEEEEEec-c---------------------cceEEEeecc
Confidence 999999998 46 999999999999999875421 22222221 1 136777
Q ss_pred --EEcCCCCeEEEecCCCeEEEEecCCCc-EEEEeecCCc----ceEEEE----EcCCCcEEEEecCCCeEEEEeCCCCc
Q 023643 166 --AVDPQGGAIFSAAGDSCAYCWDVESSR-IKMVFKGHSD----YLHCIV----ARNSTNQIVTGSEDGTARIWDCKSGK 234 (279)
Q Consensus 166 --~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~----~i~~i~----~~~~~~~l~~~~~d~~i~vwd~~~~~ 234 (279)
+|+|++++|++++.|+.|++||+++++ ++..+..|.+ .+.+++ |+|++++|++++.||.|++||+++++
T Consensus 122 ~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 201 (357)
T 3i2n_A 122 GLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA 201 (357)
T ss_dssp GGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE
T ss_pred ccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc
Confidence 457899999999999999999999886 6777766554 789998 78899999999999999999999988
Q ss_pred eEEEecCCccccccCcceeeeEEEEcC---CCCEEEEEcCcceEEeCC
Q 023643 235 CIKVIDPVKDKQLKGVISCVSCITLDA---SESWLVRVRATNYVILFS 279 (279)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~~wd 279 (279)
..... .|...|.+++|+| ++.+|++++.||.|++||
T Consensus 202 ~~~~~---------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d 240 (357)
T 3i2n_A 202 LRWET---------NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFD 240 (357)
T ss_dssp EEEEE---------ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEE
T ss_pred eeeec---------CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEe
Confidence 75543 6677899999999 999999999999999996
No 112
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-30 Score=211.95 Aligned_cols=220 Identities=15% Similarity=0.129 Sum_probs=171.0
Q ss_pred CCceeeeccc--cccccceeeee--ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccccee
Q 023643 2 CGDSTNWDED--AYRKSILKERE--ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQL 77 (279)
Q Consensus 2 dG~v~iw~~~--~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 77 (279)
||.|++||+. +.. .+..+. .|...|.+++|+| ++.+|++|+.+|.|++|++.+....
T Consensus 124 dg~v~iwd~~~~~~~--~~~~~~~~~~~~~v~~~~~sp----~~~~l~~~~~~g~v~~~~~~~~~~~------------- 184 (450)
T 2vdu_B 124 DKSLLVFDVDKTSKN--VLKLRKRFCFSKRPNAISIAE----DDTTVIIADKFGDVYSIDINSIPEE------------- 184 (450)
T ss_dssp GTEEEEEEECSSSSS--CEEEEEEEECSSCEEEEEECT----TSSEEEEEETTSEEEEEETTSCCCS-------------
T ss_pred CCeEEEEECcCCCCc--eeeeeecccCCCCceEEEEcC----CCCEEEEEeCCCcEEEEecCCcccc-------------
Confidence 7999999988 543 344444 5678999999999 8999999999999999999873211
Q ss_pred eeccccccccCCccCeEEEEecCC---CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccc
Q 023643 78 LGIEPDGFLHGHDGPAYDVKFYGG---NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWG 154 (279)
Q Consensus 78 ~~~~~~~~~~~h~~~v~~~~~~~~---~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (279)
..+...+.+|...|.+++|+|+ +. +|++++.|+.|++||++.. .....+...+
T Consensus 185 --~~~~~~~~~h~~~v~~~~~sp~~~~~~--~l~s~~~d~~i~vwd~~~~---~~~~~~~~~h----------------- 240 (450)
T 2vdu_B 185 --KFTQEPILGHVSMLTDVHLIKDSDGHQ--FIITSDRDEHIKISHYPQC---FIVDKWLFGH----------------- 240 (450)
T ss_dssp --SCCCCCSEECSSCEEEEEEEECTTSCE--EEEEEETTSCEEEEEESCT---TCEEEECCCC-----------------
T ss_pred --cccceeeecccCceEEEEEcCCCCCCc--EEEEEcCCCcEEEEECCCC---ceeeeeecCC-----------------
Confidence 0033467789999999999999 76 9999999999999998643 2222211111
Q ss_pred cCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecC-------------------------CcceEEEEE
Q 023643 155 ALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGH-------------------------SDYLHCIVA 209 (279)
Q Consensus 155 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------------------------~~~i~~i~~ 209 (279)
...|.+++|+ ++.+|++++.|+.|++||+++++++..+..+ ...|.+++|
T Consensus 241 ----~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 315 (450)
T 2vdu_B 241 ----KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK 315 (450)
T ss_dssp ----SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred ----CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence 1247999999 9999999999999999999999988887632 356899999
Q ss_pred cCCCcEEEEec-CCCeEEEEeC--CCC---ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC------cceEEe
Q 023643 210 RNSTNQIVTGS-EDGTARIWDC--KSG---KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA------TNYVIL 277 (279)
Q Consensus 210 ~~~~~~l~~~~-~d~~i~vwd~--~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~~ 277 (279)
+|++++|++++ .|+.|++|++ ..+ +.+..+ ..| ..|.+++|+|++.++++++. +..|.+
T Consensus 316 ~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~--------~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v 386 (450)
T 2vdu_B 316 SKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQII--------TFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKF 386 (450)
T ss_dssp CSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEE--------ECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred eCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEe--------ccC-CceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence 99999999998 8999999999 555 555566 455 78999999996544444443 444666
Q ss_pred C
Q 023643 278 F 278 (279)
Q Consensus 278 w 278 (279)
|
T Consensus 387 ~ 387 (450)
T 2vdu_B 387 I 387 (450)
T ss_dssp E
T ss_pred E
Confidence 6
No 113
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-31 Score=228.87 Aligned_cols=234 Identities=12% Similarity=0.116 Sum_probs=171.6
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.|+||+..+... ...+ .|...|.+++|+| +++|++++.|++|++||+.+ +
T Consensus 37 ~Dg~I~lw~~~~~~~--~~~~-~~~~~V~~l~fsp-----g~~L~S~s~D~~v~lWd~~~-------------------~ 89 (902)
T 2oaj_A 37 VTGEVHIYGQQQVEV--VIKL-EDRSAIKEMRFVK-----GIYLVVINAKDTVYVLSLYS-------------------Q 89 (902)
T ss_dssp TTSEEEEECSTTCEE--EEEC-SSCCCEEEEEEET-----TTEEEEEETTCEEEEEETTT-------------------C
T ss_pred CCCEEEEEeCCCcEE--EEEc-CCCCCEEEEEEcC-----CCEEEEEECcCeEEEEECCC-------------------C
Confidence 489999999876532 3233 3788999999999 45999999999999999998 4
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
+.+..+. |.+.|++++|+|+++ +|++|+.||.|++||++..... ..... ... . . ......+..
T Consensus 90 ~~~~~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~--~~~i~--~~~---~---~----~~~~~~h~~ 152 (902)
T 2oaj_A 90 KVLTTVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLS--SFKLD--NLQ---K---S----SFFPAARLS 152 (902)
T ss_dssp SEEEEEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEE--EEEEC--CHH---H---H----HTCSSSCCC
T ss_pred cEEEEEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccc--cceec--ccc---c---c----ccccccCCC
Confidence 4445554 667899999999998 9999999999999998753211 00000 000 0 0 000112334
Q ss_pred CceeEEEcCC-CCeEEEecCCCeEEEEecCCCcEEEEeecC------------------CcceEEEEEcCCCcEEEEecC
Q 023643 161 ENNAIAVDPQ-GGAIFSAAGDSCAYCWDVESSRIKMVFKGH------------------SDYLHCIVARNSTNQIVTGSE 221 (279)
Q Consensus 161 ~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------------------~~~i~~i~~~~~~~~l~~~~~ 221 (279)
.|++++|+|+ +..+++|+.|+.| +||+++++++..+..| ...|.+++|+|+|++|++++.
T Consensus 153 ~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~ 231 (902)
T 2oaj_A 153 PIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHE 231 (902)
T ss_dssp CCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEET
T ss_pred CeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEEC
Confidence 5899999996 4689999999999 9999999999888765 477999999999999999999
Q ss_pred CCeEEEEeCCCCceEEE--ec---CCccc-c-cc---CcceeeeEEEEc----CCC-CEEEEEcCcc-----eEEeCC
Q 023643 222 DGTARIWDCKSGKCIKV--ID---PVKDK-Q-LK---GVISCVSCITLD----ASE-SWLVRVRATN-----YVILFS 279 (279)
Q Consensus 222 d~~i~vwd~~~~~~~~~--~~---~~~~~-~-~~---~~~~~v~~~~~~----~~~-~~l~~~~~d~-----~i~~wd 279 (279)
||+|++||+++++++.. +. .+... . .. .|...|.+++|+ |++ .+|++|+.|. .+.+|+
T Consensus 232 Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~ 309 (902)
T 2oaj_A 232 DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMID 309 (902)
T ss_dssp TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEE
T ss_pred CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEe
Confidence 99999999999988764 21 01000 0 00 245689999995 443 5677776652 566653
No 114
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-31 Score=212.69 Aligned_cols=214 Identities=11% Similarity=0.090 Sum_probs=158.9
Q ss_pred ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccc-------ccccCCcccceeee---cccccccc-CCcc
Q 023643 23 ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKL-------PLGLSNSKVQQLLG---IEPDGFLH-GHDG 91 (279)
Q Consensus 23 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-------~~~~~~~~~~~~~~---~~~~~~~~-~h~~ 91 (279)
.-...|.+++|+| ||+++|+++.|++|+ |........ ...+.+.+....+. .+....+. .|..
T Consensus 13 ~~~~~v~sv~~Sp----DG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~ 86 (588)
T 2j04_A 13 EFEDWKNNLTWAR----DGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVC 86 (588)
T ss_dssp CCSSSSCCEEECT----TSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSC
T ss_pred HhhccEEEEEECC----CCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCC
Confidence 3457899999999 999999999999999 655443221 12223332222111 22222222 4688
Q ss_pred CeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC
Q 023643 92 PAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG 171 (279)
Q Consensus 92 ~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 171 (279)
.|.+++|+|+++ +|++++.||.|++||.+. ....+. ++. + -....+.+++|+|+|
T Consensus 87 ~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~-----~l~~l~-~~~-~----------------~~~~sv~svafSPDG 141 (588)
T 2j04_A 87 YPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK-----MLTNLD-SKG-N----------------LSSRTYHCFEWNPIE 141 (588)
T ss_dssp CEEEEEECSSSS--CEEEEETTSCEEEEETTE-----EEEECC-CSS-C----------------STTTCEEEEEECSSS
T ss_pred cEEEEEECCCCC--EEEEEeCCCcEEEEeCCc-----eeeecc-CCC-c----------------cccccEEEEEEcCCC
Confidence 899999999998 999999999999999432 111111 110 0 001137899999999
Q ss_pred CeEEEecCCCeEEEEecCCCc-------EEEEe----ecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE---E
Q 023643 172 GAIFSAAGDSCAYCWDVESSR-------IKMVF----KGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI---K 237 (279)
Q Consensus 172 ~~l~~~~~d~~i~i~d~~~~~-------~~~~~----~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~---~ 237 (279)
++|++|+.||+|++||+.+++ .+.++ .+|.+.|.+++|+|+| +++++.|++|++||+..++.. .
T Consensus 142 ~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~ 219 (588)
T 2j04_A 142 SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSR 219 (588)
T ss_dssp SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEE
T ss_pred CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccccee
Confidence 999999999999999999875 35676 5677899999999999 888889999999999887732 3
Q ss_pred EecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 238 VIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
++. .+|...|.+++|+ +.+||+++ ++.|++||
T Consensus 220 tL~-------~~h~~~V~svaFs--g~~LASa~-~~tIkLWd 251 (588)
T 2j04_A 220 MIQ-------NASRRKITDLKIV--DYKVVLTC-PGYVHKID 251 (588)
T ss_dssp EEE-------CCCSSCCCCEEEE--TTEEEEEC-SSEEEEEE
T ss_pred eec-------ccccCcEEEEEEE--CCEEEEEe-CCeEEEEE
Confidence 442 3677899999999 68899987 69999996
No 115
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.98 E-value=9.8e-30 Score=199.91 Aligned_cols=232 Identities=10% Similarity=0.025 Sum_probs=159.7
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
|+.|++||.+..+ .+..+. +...|.+++|++ + .++++ .|+.|++||+.+. .+
T Consensus 80 d~~v~iWd~~~~~--~~~~~~-~~~~v~~v~~~~----~--~~~~~-~~~~i~i~d~~~~------------------~~ 131 (355)
T 3vu4_A 80 KEVVHIWDDVKKQ--DVSRIK-VDAPVKDLFLSR----E--FIVVS-YGDVISVFKFGNP------------------WK 131 (355)
T ss_dssp TTEEEEEETTTTE--EEEEEE-CSSCEEEEEECS----S--EEEEE-ETTEEEEEESSTT------------------CC
T ss_pred ccEEEEEECCCCc--EEEEEE-CCCceEEEEEcC----C--EEEEE-EcCEEEEEECCCC------------------ce
Confidence 6799999988764 355555 667999999998 3 34443 4789999999873 13
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEE--eeCCCcEEEeecCCCccCcce-eeeccCcccc-eEEeecCCCCCccccCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLS--CGDDGRICGWRWKEFTESKVP-INLQGNHVKP-VLDLVNHQHKGPWGALS 157 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s--~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 157 (279)
.+..+.. +...+++++ . +++. ++.||.|++||++........ .........+ +..+ ..
T Consensus 132 ~~~~~~~---~~~~~~~s~--~--~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~-----------~~ 193 (355)
T 3vu4_A 132 RITDDIR---FGGVCEFSN--G--LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI-----------KA 193 (355)
T ss_dssp BSSCCEE---EEEEEEEET--T--EEEEEESSCTTCEEEEECCC------------------CCEEE-----------CC
T ss_pred eeEEecc---CCceEEEEc--c--EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE-----------Ec
Confidence 4444443 444566666 3 5555 689999999998753211000 0000000001 1111 12
Q ss_pred CCCCceeEEEcCCCCeEEEecCCCe-EEEEecCCCcEEEEee-c-CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCc
Q 023643 158 PVPENNAIAVDPQGGAIFSAAGDSC-AYCWDVESSRIKMVFK-G-HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGK 234 (279)
Q Consensus 158 ~~~~i~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~-~-~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~ 234 (279)
|...|++++|+|++.+|++|+.|++ |++||+++++++..+. + |...|.+++|+|++++|++++.|++|++||++.+.
T Consensus 194 h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 194 HTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred cCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 2335899999999999999999998 9999999999999998 5 99999999999999999999999999999997653
Q ss_pred eE--EEecC-----Ccc-------ccc-cCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 235 CI--KVIDP-----VKD-------KQL-KGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 235 ~~--~~~~~-----~~~-------~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.. ..+.. ... ..+ .........++|++++++|++++.||.+++|+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 274 DNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp CCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEE
T ss_pred CcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 21 11110 000 000 11222346789999999999999999999884
No 116
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.6e-31 Score=209.31 Aligned_cols=190 Identities=10% Similarity=-0.002 Sum_probs=148.1
Q ss_pred CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEe
Q 023643 40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGW 119 (279)
Q Consensus 40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 119 (279)
++.+|++|+.||+|++||+.++ +.+..+. ...|.++.|+|. +++++.|++|++|
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~-------------------~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w 100 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDS-------------------KTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLL 100 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSS-------------------SCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCC-------------------cEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEE
Confidence 7889999999999999999883 3344443 456777778775 8999999999999
Q ss_pred ecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC--CCCeEEEecCCCeEEEEecCCCcEEEEe
Q 023643 120 RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP--QGGAIFSAAGDSCAYCWDVESSRIKMVF 197 (279)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 197 (279)
+.+.. ........ ...+..... .+...|.+++|+| +++++++++.|+.|++||+++++.+..+
T Consensus 101 ~~~~~---~~~~~~~~--~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 165 (343)
T 3lrv_A 101 YPGNQ---ITILDSKT--NKVLREIEV----------DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVH 165 (343)
T ss_dssp ETTTE---EEEEETTT--CCEEEEEEC----------CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEE
T ss_pred EccCc---eEEeecCC--cceeEEeec----------CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 97531 00001100 010111110 1112489999999 9999999999999999999999987766
Q ss_pred ec-CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE-EEecCCccccccC-cceeeeEEEEcCCCCEEEEEcCcce
Q 023643 198 KG-HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI-KVIDPVKDKQLKG-VISCVSCITLDASESWLVRVRATNY 274 (279)
Q Consensus 198 ~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~ 274 (279)
.. +...+.+++|+|++.+|++|+.||.|++||+++++.+ ..+ .. |...|++++|+|++.+|++++ |+.
T Consensus 166 ~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~--------~~~h~~~v~~l~fs~~g~~l~s~~-~~~ 236 (343)
T 3lrv_A 166 SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRF--------PVDEEAKIKEVKFADNGYWMVVEC-DQT 236 (343)
T ss_dssp CCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEEC--------CCCTTSCEEEEEECTTSSEEEEEE-SSB
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEE--------eccCCCCEEEEEEeCCCCEEEEEe-CCe
Confidence 43 5568999999999999999999999999999999887 666 45 889999999999999999999 459
Q ss_pred EEeCC
Q 023643 275 VILFS 279 (279)
Q Consensus 275 i~~wd 279 (279)
|++||
T Consensus 237 v~iwd 241 (343)
T 3lrv_A 237 VVCFD 241 (343)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.98 E-value=1.6e-29 Score=201.31 Aligned_cols=214 Identities=10% Similarity=0.083 Sum_probs=170.4
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEE-EEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTI-VIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG 79 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 79 (279)
.||.|++||+++.+ .+..+..| ..+.+++|+| +++++ ++++.|++|++||+.+
T Consensus 10 ~d~~v~v~d~~~~~--~~~~~~~~-~~~~~~~~s~----dg~~l~~~~~~d~~i~v~d~~~------------------- 63 (391)
T 1l0q_A 10 ESDNISVIDVTSNK--VTATIPVG-SNPMGAVISP----DGTKVYVANAHSNDVSIIDTAT------------------- 63 (391)
T ss_dssp TTTEEEEEETTTTE--EEEEEECS-SSEEEEEECT----TSSEEEEEEGGGTEEEEEETTT-------------------
T ss_pred CCCEEEEEECCCCe--EEEEeecC-CCcceEEECC----CCCEEEEECCCCCeEEEEECCC-------------------
Confidence 37899999998764 35556655 4589999999 88876 6777999999999987
Q ss_pred ccccccccCCccCeEEEEecCCCCceEE-EEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643 80 IEPDGFLHGHDGPAYDVKFYGGNEDALL-LSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP 158 (279)
Q Consensus 80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (279)
++.+..+..+. .+.+++|+|+++ +| ++++.++.|++||+++.+ ....+..+
T Consensus 64 ~~~~~~~~~~~-~v~~~~~spdg~--~l~~~~~~~~~v~v~d~~~~~---~~~~~~~~---------------------- 115 (391)
T 1l0q_A 64 NNVIATVPAGS-SPQGVAVSPDGK--QVYVTNMASSTLSVIDTTSNT---VAGTVKTG---------------------- 115 (391)
T ss_dssp TEEEEEEECSS-SEEEEEECTTSS--EEEEEETTTTEEEEEETTTTE---EEEEEECS----------------------
T ss_pred CeEEEEEECCC-CccceEECCCCC--EEEEEECCCCEEEEEECCCCe---EEEEEeCC----------------------
Confidence 45555555444 899999999998 66 556678999999986532 11111111
Q ss_pred CCCceeEEEcCCCCeE-EEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEE-EEecCCCeEEEEeCCCCceE
Q 023643 159 VPENNAIAVDPQGGAI-FSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQI-VTGSEDGTARIWDCKSGKCI 236 (279)
Q Consensus 159 ~~~i~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd~~~~~~~ 236 (279)
..+.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+ ..+.+++|+|+++++ ++++.++.|++||+++++..
T Consensus 116 -~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~ 193 (391)
T 1l0q_A 116 -KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI 193 (391)
T ss_dssp -SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred -CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE
Confidence 126899999999977 67888999999999999999888765 456999999999877 67888999999999999888
Q ss_pred EEecCCccccccCcceeeeEEEEcCCCCEEEEEc---CcceEEeCC
Q 023643 237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVR---ATNYVILFS 279 (279)
Q Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~~wd 279 (279)
..+. +...+.+++|+|++++|++++ .++.|++||
T Consensus 194 ~~~~---------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d 230 (391)
T 1l0q_A 194 DTVK---------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID 230 (391)
T ss_dssp EEEE---------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred EEEe---------cCCCccceEECCCCCEEEEEecCcCCCcEEEEE
Confidence 7772 345788999999999999887 689999996
No 118
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=5.9e-31 Score=209.63 Aligned_cols=198 Identities=10% Similarity=0.056 Sum_probs=134.0
Q ss_pred CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecC--------CCCceEEEEee
Q 023643 40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYG--------GNEDALLLSCG 111 (279)
Q Consensus 40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--------~~~~~~l~s~~ 111 (279)
++.+||+++.|++|+|||..+.... ....+..+.+|.+.|++++|+| +++ +|+|++
T Consensus 100 ~~~~las~~~d~~v~lw~~~~~~~~--------------~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s 163 (393)
T 4gq1_A 100 YSLFLACVCQDNTVRLIITKNETII--------------TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVG 163 (393)
T ss_dssp EEEEEEEEETTSCEEEEEEETTEEE--------------EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCccc--------------eeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEE
Confidence 5668999999999999999874211 1234567889999999999998 555 999999
Q ss_pred CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCC-eEEEecCCCeEEEEecCC
Q 023643 112 DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG-AIFSAAGDSCAYCWDVES 190 (279)
Q Consensus 112 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~ 190 (279)
.|++|+|||+++.. .......++ ..+.+++|+|++. +|++++.|+.|++||+++
T Consensus 164 ~D~tv~~Wd~~~~~---~~~~~~~~~----------------------~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t 218 (393)
T 4gq1_A 164 DDCTLIIWRLTDEG---PILAGYPLS----------------------SPGISVQFRPSNPNQLIVGERNGNIRIFDWTL 218 (393)
T ss_dssp TTSEEEEEEEETTE---EEEEEEECS----------------------SCEEEEEEETTEEEEEEEEETTSEEEEEETTC
T ss_pred CCCeEEEEECCCCc---eeeeecCCC----------------------CCcEEEEECCCCCceEEecCCCCEEEEEECCC
Confidence 99999999986432 222222211 1378999999875 799999999999999988
Q ss_pred CcEEEEe-------------------------ecCCcceEEEEEc-CCCcEEEEecCCCeEEEEeCCCCceEEEecCCcc
Q 023643 191 SRIKMVF-------------------------KGHSDYLHCIVAR-NSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKD 244 (279)
Q Consensus 191 ~~~~~~~-------------------------~~~~~~i~~i~~~-~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 244 (279)
++..... .+|...+.++.|+ |+++.|++++.|+++++||+..++....+..+..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~ 298 (393)
T 4gq1_A 219 NLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTM 298 (393)
T ss_dssp CC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------
T ss_pred CcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecC
Confidence 7544322 3567788899987 6899999999999999999998876666532210
Q ss_pred -----------ccccCcceeeeEEEEcC--CCCEEEEEcCcceEEeCC
Q 023643 245 -----------KQLKGVISCVSCITLDA--SESWLVRVRATNYVILFS 279 (279)
Q Consensus 245 -----------~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd 279 (279)
.....+. ......|+| ++.++++|+.||.|++||
T Consensus 299 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd 345 (393)
T 4gq1_A 299 KLGPKNLLPNVQGISLFP-SLLGACPHPRYMDYFATAHSQHGLIQLIN 345 (393)
T ss_dssp -----CCSCSEEEECSSC-CSSCCEECSSCTTEEEEEETTTTEEEEEE
T ss_pred ccccEEEccccccccccC-cceeEEEccCCCCEEEEEECCCCEEEEEE
Confidence 0001111 122233443 345678889999999996
No 119
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=2.1e-29 Score=201.41 Aligned_cols=236 Identities=17% Similarity=0.146 Sum_probs=148.9
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCC-EEEEecCCCcEEEEeCCCCCccc-ccccCCcccceee
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPD-TIVIASSDGSITSYSIPSCISKL-PLGLSNSKVQQLL 78 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~ 78 (279)
.||.|++||++.. ..+..+..|...|.+++|+| ++. +|++++.||.|++||+.+..... .+.......
T Consensus 164 ~~~~v~~~d~~~~--~~~~~~~~~~~~v~~~~~~~----~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---- 233 (408)
T 4a11_B 164 RGPKVQLCDLKSG--SCSHILQGHRQEILAVSWSP----RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK---- 233 (408)
T ss_dssp SSSSEEEEESSSS--CCCEEECCCCSCEEEEEECS----SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS----
T ss_pred CCCeEEEEeCCCc--ceeeeecCCCCcEEEEEECC----CCCcEEEEEcCCCcEEEEECCCCCccccccccccccc----
Confidence 3789999998876 34677888999999999999 777 69999999999999998753211 111100000
Q ss_pred eccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643 79 GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP 158 (279)
Q Consensus 79 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (279)
..........|...|.+++|+|+++ +|++++.||.|++||+++................
T Consensus 234 ~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~------------------- 292 (408)
T 4a11_B 234 SQAVESANTAHNGKVNGLCFTSDGL--HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSK------------------- 292 (408)
T ss_dssp CCCTTTSSCSCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCS-------------------
T ss_pred ceeeccccccccCceeEEEEcCCCC--EEEEecCCCeEEEEECCCCccceecccccccccc-------------------
Confidence 0223344567999999999999998 9999999999999998764322111110000000
Q ss_pred CCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE
Q 023643 159 VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV 238 (279)
Q Consensus 159 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 238 (279)
..+...........+++++.++.|++||+.+++++..+.+|...|.+++|+|++++|++++.||.|++||+++++.+..
T Consensus 293 -~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 293 -KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp -SCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------
T ss_pred -ccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence 0011222223445677778899999999999999999999999999999999999999999999999999999887766
Q ss_pred ecCCccccccCcceeeeEEEEcC-CCCEEEEEcCcceEEeCC
Q 023643 239 IDPVKDKQLKGVISCVSCITLDA-SESWLVRVRATNYVILFS 279 (279)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd 279 (279)
.... . ....+.| ....+.+.+.++.+++|+
T Consensus 372 ~~~~--------~---~~~~~~~~~~~~~~~~~~~~~~~~W~ 402 (408)
T 4a11_B 372 DDET--------T---TKSQLNPAFEDAWSSSDEEGGTSAWS 402 (408)
T ss_dssp ------------------------------------------
T ss_pred CCce--------E---eccccccccceeecccCccCceeecC
Confidence 5321 1 1122333 334456677889999995
No 120
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=1.5e-29 Score=197.61 Aligned_cols=183 Identities=21% Similarity=0.247 Sum_probs=147.7
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.+++||...... .......|...+..++|++. ....++++++.|+.|++||+.+ .
T Consensus 148 ~d~~~~~~d~~~~~~-~~~~~~~~~~~v~~~~~~~~--~~~~~~~s~~~d~~i~i~d~~~-------------------~ 205 (340)
T 4aow_A 148 RDKTIKLWNTLGVCK-YTVQDESHSEWVSCVRFSPN--SSNPIIVSCGWDKLVKVWNLAN-------------------C 205 (340)
T ss_dssp TTSCEEEECTTSCEE-EEECSSSCSSCEEEEEECSC--SSSCEEEEEETTSCEEEEETTT-------------------T
T ss_pred CCCeEEEEEeCCCce-EEEEeccccCcccceEEccC--CCCcEEEEEcCCCEEEEEECCC-------------------C
Confidence 389999999876542 34456678999999999983 1345788999999999999998 5
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
+.+..+.+|.++|.+++|+|+++ +|++++.||.|++||++.. .....+..+ .
T Consensus 206 ~~~~~~~~h~~~v~~~~~s~~~~--~l~s~s~Dg~i~iwd~~~~---~~~~~~~~~-----------------------~ 257 (340)
T 4aow_A 206 KLKTNHIGHTGYLNTVTVSPDGS--LCASGGKDGQAMLWDLNEG---KHLYTLDGG-----------------------D 257 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS--EEEEEETTCEEEEEETTTT---EEEEEEECS-----------------------S
T ss_pred ceeeEecCCCCcEEEEEECCCCC--EEEEEeCCCeEEEEEeccC---ceeeeecCC-----------------------c
Confidence 66778889999999999999998 9999999999999998653 222222211 1
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee---------cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK---------GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK 231 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---------~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~ 231 (279)
.+.++.|+|++. +++++.|+.|++||++++..+..++ +|...|++++|+|++++|++|+.||.|+|||++
T Consensus 258 ~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 258 IINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp CEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred eEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 378999999765 5566679999999999887766553 578899999999999999999999999999999
Q ss_pred CCc
Q 023643 232 SGK 234 (279)
Q Consensus 232 ~~~ 234 (279)
+|+
T Consensus 337 tGt 339 (340)
T 4aow_A 337 IGT 339 (340)
T ss_dssp C--
T ss_pred CcC
Confidence 885
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.8e-28 Score=195.28 Aligned_cols=213 Identities=11% Similarity=0.045 Sum_probs=168.0
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEE-EecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIV-IASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
||.|++||+++.+ .+..+..+ ..+.+++|+| ++++|+ +++.++.|++||+.+ +
T Consensus 53 d~~i~v~d~~~~~--~~~~~~~~-~~v~~~~~sp----dg~~l~~~~~~~~~v~v~d~~~-------------------~ 106 (391)
T 1l0q_A 53 SNDVSIIDTATNN--VIATVPAG-SSPQGVAVSP----DGKQVYVTNMASSTLSVIDTTS-------------------N 106 (391)
T ss_dssp GTEEEEEETTTTE--EEEEEECS-SSEEEEEECT----TSSEEEEEETTTTEEEEEETTT-------------------T
T ss_pred CCeEEEEECCCCe--EEEEEECC-CCccceEECC----CCCEEEEEECCCCEEEEEECCC-------------------C
Confidence 7899999987764 35555544 4899999999 888775 556779999999997 4
Q ss_pred cccccccCCccCeEEEEecCCCCceEE-EEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALL-LSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV 159 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (279)
+.+..+..| ..+.+++|+|+++ .| ++++.|+.|++||+++.+ ....+..+.
T Consensus 107 ~~~~~~~~~-~~~~~~~~s~dg~--~l~~~~~~~~~v~~~d~~~~~---~~~~~~~~~---------------------- 158 (391)
T 1l0q_A 107 TVAGTVKTG-KSPLGLALSPDGK--KLYVTNNGDKTVSVINTVTKA---VINTVSVGR---------------------- 158 (391)
T ss_dssp EEEEEEECS-SSEEEEEECTTSS--EEEEEETTTTEEEEEETTTTE---EEEEEECCS----------------------
T ss_pred eEEEEEeCC-CCcceEEECCCCC--EEEEEeCCCCEEEEEECCCCc---EEEEEecCC----------------------
Confidence 444455544 4689999999998 66 788889999999986432 222221111
Q ss_pred CCceeEEEcCCCCeE-EEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEec---CCCeEEEEeCCCCce
Q 023643 160 PENNAIAVDPQGGAI-FSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS---EDGTARIWDCKSGKC 235 (279)
Q Consensus 160 ~~i~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~d~~i~vwd~~~~~~ 235 (279)
.+.+++|+|+++.+ ++++.++.|++||+++++.+..+. +...+.+++|+|++++|++++ .++.|++||+++++.
T Consensus 159 -~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 159 -SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (391)
T ss_dssp -SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred -CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE
Confidence 25789999999877 567889999999999998888776 566889999999999988887 699999999999998
Q ss_pred EEEecCCccccccCcceeeeEEEEcCCCCEE-EEEcCcceEEeCC
Q 023643 236 IKVIDPVKDKQLKGVISCVSCITLDASESWL-VRVRATNYVILFS 279 (279)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~wd 279 (279)
+..+. .+. .+.+++|+|++++| ++++.|+.|++||
T Consensus 237 ~~~~~--------~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d 272 (391)
T 1l0q_A 237 TARIP--------VGP-DPAGIAVTPDGKKVYVALSFXNTVSVID 272 (391)
T ss_dssp EEEEE--------CCS-SEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEe--------cCC-CccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence 88873 332 46889999999877 6778899999996
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=4.6e-29 Score=201.29 Aligned_cols=217 Identities=12% Similarity=0.038 Sum_probs=174.0
Q ss_pred CCceeeecccccccccee---eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643 2 CGDSTNWDEDAYRKSILK---EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL 78 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 78 (279)
||.|++||+++.+..... .+..|...|.+++|+| ++.++++++.|+.|++||+.+
T Consensus 143 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~s~~~d~~v~~~d~~~------------------ 200 (433)
T 3bws_A 143 DEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE----HNELWVSQMQANAVHVFDLKT------------------ 200 (433)
T ss_dssp SSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG----GTEEEEEEGGGTEEEEEETTT------------------
T ss_pred CCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC----CCEEEEEECCCCEEEEEECCC------------------
Confidence 678999998876432111 4457888999999999 899999999999999999987
Q ss_pred eccccccccCCccCeEEEEecCCCCceEE-EEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643 79 GIEPDGFLHGHDGPAYDVKFYGGNEDALL-LSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS 157 (279)
Q Consensus 79 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (279)
++.+..+..|...+.+++|+|+++ ++ ++++.|+.|++||+++.. ....+...
T Consensus 201 -~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~i~~~d~~~~~---~~~~~~~~--------------------- 253 (433)
T 3bws_A 201 -LAYKATVDLTGKWSKILLYDPIRD--LVYCSNWISEDISVIDRKTKL---EIRKTDKI--------------------- 253 (433)
T ss_dssp -CCEEEEEECSSSSEEEEEEETTTT--EEEEEETTTTEEEEEETTTTE---EEEECCCC---------------------
T ss_pred -ceEEEEEcCCCCCeeEEEEcCCCC--EEEEEecCCCcEEEEECCCCc---EEEEecCC---------------------
Confidence 555667778889999999999998 66 566689999999986432 11111111
Q ss_pred CCCCceeEEEcCCCCeEEEec--------CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcE-EEEecCCCeEEEE
Q 023643 158 PVPENNAIAVDPQGGAIFSAA--------GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ-IVTGSEDGTARIW 228 (279)
Q Consensus 158 ~~~~i~~~~~~~~~~~l~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~d~~i~vw 228 (279)
..+.+++|+|+++.+++++ .|+.|++||+++++.+..+. |...+.+++|+|+++. +++++.|+.|++|
T Consensus 254 --~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~ 330 (433)
T 3bws_A 254 --GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVY 330 (433)
T ss_dssp --SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEE
T ss_pred --CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 1258999999999998887 58899999999998877664 5668899999999865 5677999999999
Q ss_pred eCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC---------------cceEEeCC
Q 023643 229 DCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA---------------TNYVILFS 279 (279)
Q Consensus 229 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------d~~i~~wd 279 (279)
|+.+++.+..+. +...+.+++|+|++++|++++. ||.|++||
T Consensus 331 d~~~~~~~~~~~---------~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d 387 (433)
T 3bws_A 331 DLKEKKVQKSIP---------VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVID 387 (433)
T ss_dssp ETTTTEEEEEEE---------CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEE
T ss_pred ECCCCcEEEEec---------CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEE
Confidence 999998887772 4456889999999998888876 57999986
No 123
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=5.2e-29 Score=200.25 Aligned_cols=191 Identities=14% Similarity=0.187 Sum_probs=149.5
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
|+.+++||..... ..+..+.+|...+..+.|+| ++.++++++.|+.|++|+..+.... ..
T Consensus 208 d~~i~~~d~~~~~-~~~~~~~~h~~~~~~~~~~~----~g~~l~s~~~D~~v~i~~~~~~~~~---------------~~ 267 (420)
T 4gga_A 208 SGHIHHHDVRVAE-HHVATLSGHSQEVCGLRWAP----DGRHLASGGNDNLVNVWPSAPGEGG---------------WV 267 (420)
T ss_dssp TSEEEEEETTSSS-CEEEEEECCSSCEEEEEECT----TSSEEEEEETTSCEEEEESSCCSSC---------------SC
T ss_pred CCceeEeeecccc-eeeEEecccccceeeeeecC----CCCeeeeeeccccceEEeecccccc---------------ce
Confidence 4556666544432 33456778999999999999 8999999999999999999874321 23
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEE--eeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLS--CGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV 159 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s--~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (279)
.+.....|...|.+++|+|.+. .++++ |+.|++|++||+++.. ....+..+.
T Consensus 268 ~~~~~~~~~~~V~~~~~~p~~~-~~la~~~gs~D~~I~iwd~~t~~---~~~~~~~~~---------------------- 321 (420)
T 4gga_A 268 PLQTFTQHQGAVKAVAWCPWQS-NVLATGGGTSDRHIRIWNVCSGA---CLSAVDAHS---------------------- 321 (420)
T ss_dssp CSEEECCCSSCEEEEEECTTCT-TEEEEEECTTTCEEEEEETTTTE---EEEEEECSS----------------------
T ss_pred eeeeecccCCceeeeeeCCCcc-cEEEEEeecCCCEEEEEeCCccc---cceeecccc----------------------
Confidence 3455677999999999999876 35654 4579999999987542 222222111
Q ss_pred CCceeEEEcCCCCeEEEec--CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEE
Q 023643 160 PENNAIAVDPQGGAIFSAA--GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIK 237 (279)
Q Consensus 160 ~~i~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~ 237 (279)
.+.++.|+|+++.+++++ .|+.|++||+.+++++..+.+|.+.|++++|+|+|++|++|+.|++|+|||+....+..
T Consensus 322 -~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~ 400 (420)
T 4gga_A 322 -QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR 400 (420)
T ss_dssp -CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC-
T ss_pred -ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccc
Confidence 268899999999887754 68999999999999999999999999999999999999999999999999998766655
Q ss_pred Ee
Q 023643 238 VI 239 (279)
Q Consensus 238 ~~ 239 (279)
..
T Consensus 401 ~~ 402 (420)
T 4gga_A 401 RR 402 (420)
T ss_dssp --
T ss_pred hh
Confidence 54
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=3.8e-28 Score=195.92 Aligned_cols=214 Identities=9% Similarity=0.049 Sum_probs=170.0
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEE-EEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTI-VIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
||.|++||+++.. .+..+..|...+.+++|+| ++.++ ++++.|+.|++||+.+ +
T Consensus 190 d~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~i~~~d~~~-------------------~ 244 (433)
T 3bws_A 190 ANAVHVFDLKTLA--YKATVDLTGKWSKILLYDP----IRDLVYCSNWISEDISVIDRKT-------------------K 244 (433)
T ss_dssp GTEEEEEETTTCC--EEEEEECSSSSEEEEEEET----TTTEEEEEETTTTEEEEEETTT-------------------T
T ss_pred CCEEEEEECCCce--EEEEEcCCCCCeeEEEEcC----CCCEEEEEecCCCcEEEEECCC-------------------C
Confidence 7899999988763 3566777889999999999 78877 5566899999999987 4
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEee--------CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCc
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCG--------DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGP 152 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~--------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (279)
+.+..+..+ ..+.+++|+|+++ ++++++ .|+.|++||+++... .... .. ..
T Consensus 245 ~~~~~~~~~-~~~~~~~~~~~g~--~l~~~~~~~~~~~~~dg~i~~~d~~~~~~---~~~~-~~-~~------------- 303 (433)
T 3bws_A 245 LEIRKTDKI-GLPRGLLLSKDGK--ELYIAQFSASNQESGGGRLGIYSMDKEKL---IDTI-GP-PG------------- 303 (433)
T ss_dssp EEEEECCCC-SEEEEEEECTTSS--EEEEEEEESCTTCSCCEEEEEEETTTTEE---EEEE-EE-EE-------------
T ss_pred cEEEEecCC-CCceEEEEcCCCC--EEEEEECCCCccccCCCeEEEEECCCCcE---Eeec-cC-CC-------------
Confidence 444455544 4489999999998 888887 588999999865321 1111 00 00
Q ss_pred cccCCCCCCceeEEEcCCCCeE-EEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC----------
Q 023643 153 WGALSPVPENNAIAVDPQGGAI-FSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE---------- 221 (279)
Q Consensus 153 ~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---------- 221 (279)
.+.+++|+|+++.+ ++++.++.|++||+.+++.+..+. +...+.+++|+|+++++++++.
T Consensus 304 --------~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~ 374 (433)
T 3bws_A 304 --------NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYL 374 (433)
T ss_dssp --------CEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTT
T ss_pred --------CcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccc
Confidence 25789999999755 666889999999999998888876 6778999999999998888776
Q ss_pred -----CCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC-cceEEeCC
Q 023643 222 -----DGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA-TNYVILFS 279 (279)
Q Consensus 222 -----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd 279 (279)
||.|++||+.+++.+..+. . ...+.+++|+|++++|++++. |+.|++|+
T Consensus 375 ~~g~~dg~v~~~d~~~~~~~~~~~--------~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 375 KKGLVLGKVYVIDTTTDTVKEFWE--------A-GNQPTGLDVSPDNRYLVISDFLDHQIRVYR 429 (433)
T ss_dssp SCCSSCCEEEEEETTTTEEEEEEE--------C-SSSEEEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred cccccceEEEEEECCCCcEEEEec--------C-CCCCceEEEcCCCCEEEEEECCCCeEEEEE
Confidence 5799999999999888873 2 346899999999999988764 99999996
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=2.2e-29 Score=191.09 Aligned_cols=184 Identities=9% Similarity=-0.001 Sum_probs=132.8
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
|+.|++|++.... ..+..+..|...+..++|+|.. .++.+||+++.|++|+|||+.+ ++
T Consensus 156 d~~V~~~~~s~dG-~~~~s~~~~~~~v~~l~fs~~~-g~~~~LaSgS~D~TIkIWDl~T-------------------Gk 214 (356)
T 2w18_A 156 DQQVEVMTFAEDG-GGKENQFLMPPEETILTFAEVQ-GMQEALLGTTIMNNIVIWNLKT-------------------GQ 214 (356)
T ss_dssp TCEEEEEEECTTS-CEEEEEEECCCSSCEEEEEEEE-TSTTEEEEEETTSEEEEEETTT-------------------CC
T ss_pred CCcEEEEEECCCC-ceeeeeccCCCceeeEEeeccC-CCCceEEEecCCCcEEEEECCC-------------------Cc
Confidence 7889999974321 3466777888888888888721 2578999999999999999998 66
Q ss_pred ccccccCCc---cCeEEEEecCCCCceEE------------EEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeec
Q 023643 82 PDGFLHGHD---GPAYDVKFYGGNEDALL------------LSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVN 146 (279)
Q Consensus 82 ~~~~~~~h~---~~v~~~~~~~~~~~~~l------------~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (279)
.++++.+|. ..+.+++|+|++. ++ ++|+.|++|++||+.+... ...+.. .+ .
T Consensus 215 ~l~tL~g~~~~v~~v~~vafSpdG~--~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~---l~v~~~-------~~-p 281 (356)
T 2w18_A 215 LLKKMHIDDSYQASVCHKAYSEMGL--LFIVLSHPCAKESESLRSPVFQLIVINPKTTLS---VGVMLY-------CL-P 281 (356)
T ss_dssp EEEEEECCC---CCCEEEEEEETTE--EEEEEC------------CCEEEEEEETTTTEE---EEEEEE-------CC-C
T ss_pred EEEEEcCCCcceeeeEEEEECCCCC--EEEEeccCCCcceeeccCCCcEEEEEECCCCEE---EEEEEe-------ec-c
Confidence 677777643 4677889999986 55 6788999999999865321 111100 00 0
Q ss_pred CCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceE-EEEEcCCCcEEEEecCCCeE
Q 023643 147 HQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLH-CIVARNSTNQIVTGSEDGTA 225 (279)
Q Consensus 147 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~-~i~~~~~~~~l~~~~~d~~i 225 (279)
..+.. .+.+..+ ++..+++++.|++|+|||+.+++++.++++|...+. +++|+|+|++|++|+.|++|
T Consensus 282 ~Gh~~---------~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TI 350 (356)
T 2w18_A 282 PGQAG---------RFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNI 350 (356)
T ss_dssp TTCCC---------CEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCE
T ss_pred CCCcc---------eeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence 00000 1122333 377899999999999999999999999999987655 68999999999999999999
Q ss_pred EEEeC
Q 023643 226 RIWDC 230 (279)
Q Consensus 226 ~vwd~ 230 (279)
+|||+
T Consensus 351 klWd~ 355 (356)
T 2w18_A 351 FVYHY 355 (356)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 99995
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=4.8e-27 Score=188.20 Aligned_cols=211 Identities=9% Similarity=0.046 Sum_probs=163.2
Q ss_pred CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCC---cEEEEeCCCCCcccccccCCcccceeee
Q 023643 3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDG---SITSYSIPSCISKLPLGLSNSKVQQLLG 79 (279)
Q Consensus 3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 79 (279)
+.|++||+++. ....+..|...|.+++|+| ++++|++++.++ .|++||+.++
T Consensus 159 ~~i~i~d~~g~---~~~~l~~~~~~v~~~~~Sp----dg~~la~~s~~~~~~~i~~~d~~tg------------------ 213 (415)
T 2hqs_A 159 YELRVSDYDGY---NQFVVHRSPQPLMSPAWSP----DGSKLAYVTFESGRSALVIQTLANG------------------ 213 (415)
T ss_dssp EEEEEEETTSC---SCEEEEEESSCEEEEEECT----TSSEEEEEECTTSSCEEEEEETTTC------------------
T ss_pred ceEEEEcCCCC---CCEEEeCCCCcceeeEEcC----CCCEEEEEEecCCCcEEEEEECCCC------------------
Confidence 78999999863 3556777889999999999 999999998875 9999999873
Q ss_pred ccccccccCCccCeEEEEecCCCCceEEE-EeeCCCc--EEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643 80 IEPDGFLHGHDGPAYDVKFYGGNEDALLL-SCGDDGR--ICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL 156 (279)
Q Consensus 80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (279)
+. ..+..|.+.+.+++|+|+++ +|+ +++.|+. |++||+++... ..+..+.
T Consensus 214 -~~-~~l~~~~~~~~~~~~spdg~--~la~~~~~~g~~~i~~~d~~~~~~----~~l~~~~------------------- 266 (415)
T 2hqs_A 214 -AV-RQVASFPRHNGAPAFSPDGS--KLAFALSKTGSLNLYVMDLASGQI----RQVTDGR------------------- 266 (415)
T ss_dssp -CE-EEEECCSSCEEEEEECTTSS--EEEEEECTTSSCEEEEEETTTCCE----EECCCCS-------------------
T ss_pred -cE-EEeecCCCcccCEEEcCCCC--EEEEEEecCCCceEEEEECCCCCE----EeCcCCC-------------------
Confidence 33 24556778899999999998 676 6766665 88999864321 1121111
Q ss_pred CCCCCceeEEEcCCCCeEEEecC-CC--eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC---CeEEEEeC
Q 023643 157 SPVPENNAIAVDPQGGAIFSAAG-DS--CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED---GTARIWDC 230 (279)
Q Consensus 157 ~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i~vwd~ 230 (279)
..+.+++|+|+++.|++++. ++ .|++||+.+++.. .+..+...+.+++|+|+|++|++++.+ ..|++||+
T Consensus 267 ---~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~ 342 (415)
T 2hqs_A 267 ---SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 342 (415)
T ss_dssp ---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred ---CcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence 12689999999998888775 44 6888899887643 455577789999999999999888764 58999999
Q ss_pred CCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcc---eEEeCC
Q 023643 231 KSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATN---YVILFS 279 (279)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~~wd 279 (279)
.+++.. .+ ..+. .+.+++|+|+|++|++++.++ .|.+||
T Consensus 343 ~~~~~~-~l--------~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d 384 (415)
T 2hqs_A 343 ATGGVQ-VL--------SSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVS 384 (415)
T ss_dssp TTCCEE-EC--------CCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred CCCCEE-Ee--------cCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEE
Confidence 988764 34 2333 789999999999999988776 688775
No 127
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=3.5e-27 Score=182.52 Aligned_cols=172 Identities=13% Similarity=0.187 Sum_probs=136.7
Q ss_pred eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643 18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK 97 (279)
Q Consensus 18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 97 (279)
+..+.+|...+..+.+++ ++++|++++.||+|++||+.++... .........|.+.|.++.
T Consensus 143 ~~~~~~~~~~~~~~~~~~----~~~~l~s~~~d~~i~iwd~~~~~~~---------------~~~~~~~~~~~~~v~~~~ 203 (318)
T 4ggc_A 143 VATLSGHSQEVCGLRWAP----DGRHLASGGNDNLVNVWPSAPGEGG---------------WVPLQTFTQHQGAVKAVA 203 (318)
T ss_dssp EEEEECCSSCEEEEEECT----TSSEEEEEETTSCEEEEESSCBTTB---------------SCCSEEECCCCSCEEEEE
T ss_pred EEEEcCccCceEEEEEcC----CCCEEEEEecCcceeEEECCCCccc---------------ccceeeecccCCceEEEE
Confidence 345667889999999999 8999999999999999999874321 122344556888999999
Q ss_pred ecCCCCce-EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEE
Q 023643 98 FYGGNEDA-LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFS 176 (279)
Q Consensus 98 ~~~~~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 176 (279)
++|.+... .+++++.++.|++||.+.... ....... ..+..+.|+|++..+++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~---~~~~~~~-----------------------~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 204 WCPWQSNVLATGGGTSDRHIRIWNVCSGAC---LSAVDAH-----------------------SQVCSILWSPHYKELIS 257 (318)
T ss_dssp ECTTSTTEEEEEECTTTCEEEEEETTTCCE---EEEEECS-----------------------SCEEEEEEETTTTEEEE
T ss_pred ecCCCCcEEEEEecCCCCEEEEEecccccc---cccccce-----------------------eeeeeeeecccccceEE
Confidence 99987621 234677899999999764321 1111110 13688999999998776
Q ss_pred ec--CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCc
Q 023643 177 AA--GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGK 234 (279)
Q Consensus 177 ~~--~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~ 234 (279)
++ .|+.|++||+++++++.++++|.+.|++++|+|++++|++|+.||+|+|||+.+..
T Consensus 258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 54 79999999999999999999999999999999999999999999999999997654
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=6.6e-27 Score=187.39 Aligned_cols=218 Identities=11% Similarity=-0.014 Sum_probs=162.0
Q ss_pred ceeeecc--ccccccceeeeeecccceEEEEECCC----------CCCCCCEEEEecCC------CcEEEEeCCCCCccc
Q 023643 4 DSTNWDE--DAYRKSILKEREILTRTVFRTVWGPS----------KDGSPDTIVIASSD------GSITSYSIPSCISKL 65 (279)
Q Consensus 4 ~v~iw~~--~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~ 65 (279)
.+++||+ .+.+...-..+.+|...+..+++++. ....+..++.++.+ ++|++||+..
T Consensus 94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g----- 168 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG----- 168 (415)
T ss_dssp EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-----
T ss_pred EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-----
Confidence 8999999 76653223567888888888777641 00025677766654 7999999974
Q ss_pred ccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCC---cEEEeecCCCccCcceeeeccCcccceE
Q 023643 66 PLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDG---RICGWRWKEFTESKVPINLQGNHVKPVL 142 (279)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 142 (279)
.....+.+|...+.+++|+|+++ +|++++.++ .|++||+++... ..+..+.
T Consensus 169 ---------------~~~~~l~~~~~~v~~~~~Spdg~--~la~~s~~~~~~~i~~~d~~tg~~----~~l~~~~----- 222 (415)
T 2hqs_A 169 ---------------YNQFVVHRSPQPLMSPAWSPDGS--KLAYVTFESGRSALVIQTLANGAV----RQVASFP----- 222 (415)
T ss_dssp ---------------CSCEEEEEESSCEEEEEECTTSS--EEEEEECTTSSCEEEEEETTTCCE----EEEECCS-----
T ss_pred ---------------CCCEEEeCCCCcceeeEEcCCCC--EEEEEEecCCCcEEEEEECCCCcE----EEeecCC-----
Confidence 33456677889999999999998 999999875 999999875321 1111111
Q ss_pred EeecCCCCCccccCCCCCCceeEEEcCCCCeEE-EecCCC--eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEe
Q 023643 143 DLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF-SAAGDS--CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTG 219 (279)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 219 (279)
..+.+++|+|+++.|+ +++.++ .|++||+.+++. ..+..|...+.+++|+|+|++|+++
T Consensus 223 -----------------~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~ 284 (415)
T 2hqs_A 223 -----------------RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFT 284 (415)
T ss_dssp -----------------SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEE
T ss_pred -----------------CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEE
Confidence 1268999999999877 666555 499999998876 5667788899999999999998887
Q ss_pred cC-CC--eEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc---ceEEeCC
Q 023643 220 SE-DG--TARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT---NYVILFS 279 (279)
Q Consensus 220 ~~-d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~~wd 279 (279)
+. ++ .|.+||+.+++.. .+ ..+...+.+++|+|+|++|++++.+ ..|.+||
T Consensus 285 s~~~g~~~i~~~d~~~~~~~-~l--------~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d 341 (415)
T 2hqs_A 285 SDQAGRPQVYKVNINGGAPQ-RI--------TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQD 341 (415)
T ss_dssp ECTTSSCEEEEEETTSSCCE-EC--------CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEE
T ss_pred ECCCCCcEEEEEECCCCCEE-EE--------ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEE
Confidence 76 44 6888899887643 33 3455678899999999999988764 5788875
No 129
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=3e-25 Score=169.65 Aligned_cols=217 Identities=13% Similarity=0.093 Sum_probs=159.6
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCC-CCcccccccCCcccceeee
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPS-CISKLPLGLSNSKVQQLLG 79 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~ 79 (279)
.|+.|++||+++... ..+..|...|.+++|+| ++++|++++ ++.|++||+.+ ..
T Consensus 20 ~~~~i~~~d~~~~~~---~~~~~~~~~v~~~~~sp----dg~~l~~~~-~~~i~~~d~~~~~~----------------- 74 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKM---RVVWQTPELFEAPNWSP----DGKYLLLNS-EGLLYRLSLAGDPS----------------- 74 (297)
T ss_dssp CCEEEEEEETTTTEE---EEEEEESSCCEEEEECT----TSSEEEEEE-TTEEEEEESSSCCS-----------------
T ss_pred cceeEEEEeCCCCce---eeeccCCcceEeeEECC----CCCEEEEEc-CCeEEEEeCCCCCC-----------------
Confidence 378899999887643 34556889999999999 899999986 78999999987 42
Q ss_pred ccccccccCC-ccCeEEEEecCCCCceEEEEee--CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643 80 IEPDGFLHGH-DGPAYDVKFYGGNEDALLLSCG--DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL 156 (279)
Q Consensus 80 ~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (279)
.......| ...+.+++|+|+++ +|++++ .++..+||.++..... ...+....
T Consensus 75 --~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~------------------- 129 (297)
T 2ojh_A 75 --PEKVDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGT--PRLMTKNL------------------- 129 (297)
T ss_dssp --CEECCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCC--CEECCSSS-------------------
T ss_pred --ceEeccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCc--eEEeecCC-------------------
Confidence 12223333 46788999999998 888888 4456777765422111 11111110
Q ss_pred CCCCCceeEEEcCCCCeEE-EecCCCeEEEEecCC-CcEEEEeecCCcceEEEEEcCCCcEEEEec-CCCeEEEEeCC-C
Q 023643 157 SPVPENNAIAVDPQGGAIF-SAAGDSCAYCWDVES-SRIKMVFKGHSDYLHCIVARNSTNQIVTGS-EDGTARIWDCK-S 232 (279)
Q Consensus 157 ~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~-~ 232 (279)
.+..++|+|+++.|+ ++..++.+++|+++. ......+..+...+.+++|+|++++|+.++ .++.+++|++. .
T Consensus 130 ----~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~ 205 (297)
T 2ojh_A 130 ----PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVD 205 (297)
T ss_dssp ----SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred ----CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCC
Confidence 257889999999776 677889999998642 334455666888899999999999877665 58999999986 4
Q ss_pred CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc-----------ceEEeCC
Q 023643 233 GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT-----------NYVILFS 279 (279)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~~wd 279 (279)
+.....+ ..|...+..++|+|++++|++++.+ +.|.+||
T Consensus 206 ~~~~~~~--------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d 255 (297)
T 2ojh_A 206 GSSVERI--------TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMD 255 (297)
T ss_dssp SSCEEEC--------CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEE
T ss_pred CCCcEEE--------ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEe
Confidence 5556665 5666789999999999999988766 5688775
No 130
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.94 E-value=5.1e-26 Score=182.91 Aligned_cols=218 Identities=9% Similarity=-0.023 Sum_probs=149.4
Q ss_pred ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED 104 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 104 (279)
...+..+++++ ++.++++++.++ +++|+....... .................. ..+...|.+++|+|+++
T Consensus 36 ~~~~n~lavs~----~~~~l~~~~~dg-v~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~- 105 (434)
T 2oit_A 36 KERSSLLAVSN----KYGLVFAGGASG-LQIFPTKNLLIQ---NKPGDDPNKIVDKVQGLL-VPMKFPIHHLALSCDNL- 105 (434)
T ss_dssp CSCCBCEEEET----TTTEEEEEETTE-EEEEEHHHHCCC---CCTTCCTTCEEECCCCEE-ECCSSCEEEEEECTTSC-
T ss_pred CCCccEEEEec----CCCEEEEECCCE-EEEEEchHhhhh---cccccCcccccccCcccc-ccCCCcccEEEEcCCCC-
Confidence 34688899999 889999999888 899886532110 000000000110111111 23667899999999998
Q ss_pred eEEE----EeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC-CCeEEEecC
Q 023643 105 ALLL----SCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ-GGAIFSAAG 179 (279)
Q Consensus 105 ~~l~----s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~ 179 (279)
+|+ +++.|+.|++||+++...... ....++..+... ..|...|.+++|+|+ +.+|++++.
T Consensus 106 -~lav~~~sgs~d~~v~iwd~~~~~~~~~------~~~~~~~~~~~~--------~~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 106 -TLSACMMSSEYGSIIAFFDVRTFSNEAK------QQKRPFAYHKLL--------KDAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp -EEEEEEEETTTEEEEEEEEHHHHHCTTC------SSCCCSEEEECC--------CSGGGSEEEEEECSSCTTEEEEEET
T ss_pred -EEEEEEeccCCCceEEEEEccccccCCc------CCcceeeeeecc--------CCCCCceEEEEECCCCCCEEEEEEC
Confidence 888 889999999999864311000 000000000000 001124799999998 789999999
Q ss_pred CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEE
Q 023643 180 DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITL 259 (279)
Q Consensus 180 d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 259 (279)
||+|++||++++..+....+|...|++++|+|+|++|++|+.||.|++||++ ++....+..+... ...|...|.+++|
T Consensus 171 Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~-~~~~~~~v~~v~w 248 (434)
T 2oit_A 171 DGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFY-ESDHPVRVLDVLW 248 (434)
T ss_dssp TSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTC-CTTSCEEEEEEEE
T ss_pred CCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCccc-CCCCceeEEEEEE
Confidence 9999999999987777777889999999999999999999999999999998 6666666433210 0134568999999
Q ss_pred cCCCCEEEEE
Q 023643 260 DASESWLVRV 269 (279)
Q Consensus 260 ~~~~~~l~~~ 269 (279)
++++.++++.
T Consensus 249 ~~~~~~l~~~ 258 (434)
T 2oit_A 249 IGTYVFAIVY 258 (434)
T ss_dssp EETTEEEEEE
T ss_pred ecCceEEEEE
Confidence 9988877653
No 131
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=8.3e-24 Score=165.17 Aligned_cols=228 Identities=10% Similarity=0.118 Sum_probs=152.7
Q ss_pred CCceeeecccc-ccccceeeeeecccceEEEEECCCCCCCCCEEEEecCC-CcEEEEeCC--CCCcccccccCCccccee
Q 023643 2 CGDSTNWDEDA-YRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSD-GSITSYSIP--SCISKLPLGLSNSKVQQL 77 (279)
Q Consensus 2 dG~v~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-g~i~iw~~~--~~~~~~~~~~~~~~~~~~ 77 (279)
||.|++|+++. .....+.. ..+...+.+++|+| ++++|++++.+ +.|.+|++. ++.
T Consensus 14 ~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~sp----dg~~l~~~~~~~~~v~~~~~~~~~~~--------------- 73 (343)
T 1ri6_A 14 SQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSP----DKRYLYVGVRPEFRVLAYRIAPDDGA--------------- 73 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECT----TSSEEEEEETTTTEEEEEEECTTTCC---------------
T ss_pred CCeEEEEEECCCCcEEEeee-EecCCCCceEEECC----CCCEEEEeecCCCeEEEEEecCCCCc---------------
Confidence 78999999853 22222333 34677899999999 89988888776 999999997 321
Q ss_pred eeccccccccCCccCeEEEEecCCCCceEEEEee-CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643 78 LGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCG-DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL 156 (279)
Q Consensus 78 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (279)
.+.+..+..+. .+..++|+|+++ +|++++ .++.|.+||++..............
T Consensus 74 --~~~~~~~~~~~-~~~~~~~s~dg~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-------------------- 128 (343)
T 1ri6_A 74 --LTFAAESALPG-SLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-------------------- 128 (343)
T ss_dssp --EEEEEEEECSS-CCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCC--------------------
T ss_pred --eeeccccccCC-CCcEEEEcCCCC--EEEEEecCCCeEEEEECCCCccccccccccCC--------------------
Confidence 12223333333 678999999998 676555 5889999998421111111111110
Q ss_pred CCCCCceeEEEcCCCCeEEEec-CCCeEEEEecCC-CcEEE----Eeec-CCcceEEEEEcCCCcEEE-EecCCCeEEEE
Q 023643 157 SPVPENNAIAVDPQGGAIFSAA-GDSCAYCWDVES-SRIKM----VFKG-HSDYLHCIVARNSTNQIV-TGSEDGTARIW 228 (279)
Q Consensus 157 ~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~-~~~~~----~~~~-~~~~i~~i~~~~~~~~l~-~~~~d~~i~vw 228 (279)
..+.+++|+|+++++++++ .++.|++||+.+ ++... .+.. ....+.+++|+|++++++ ++..++.|.+|
T Consensus 129 ---~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~ 205 (343)
T 1ri6_A 129 ---DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVW 205 (343)
T ss_dssp ---TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred ---CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEE
Confidence 1257899999999888776 889999999987 65432 2232 334788999999998765 55589999999
Q ss_pred eCCC--Cce--EEEecCCccccccCcceeeeEEEEcCCCCEEE-EEcCcceEEeCC
Q 023643 229 DCKS--GKC--IKVIDPVKDKQLKGVISCVSCITLDASESWLV-RVRATNYVILFS 279 (279)
Q Consensus 229 d~~~--~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~wd 279 (279)
|+.. ++. ...+..... -......+..++|+|++++|+ ++..++.|.+||
T Consensus 206 ~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d 259 (343)
T 1ri6_A 206 ELKDPHGNIECVQTLDMMPE--NFSDTRWAADIHITPDGRHLYACDRTASLITVFS 259 (343)
T ss_dssp ESSCTTSCCEEEEEEECSCT--TCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EecCCCCcEEEEeeccccCc--cccccCCccceEECCCCCEEEEEecCCCEEEEEE
Confidence 9953 433 222211100 001134567899999998877 555799999986
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=6.3e-24 Score=175.18 Aligned_cols=240 Identities=12% Similarity=0.041 Sum_probs=167.8
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeC--CCCCcccccccCCcccceeee
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSI--PSCISKLPLGLSNSKVQQLLG 79 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~--~~~~~~~~~~~~~~~~~~~~~ 79 (279)
||+|++||.++.+ ++..+..+.. +..++|+| ++++|++++.|++|++||+ .+
T Consensus 158 d~~V~v~D~~t~~--~~~~i~~g~~-~~~v~~sp----dg~~l~v~~~d~~V~v~D~~~~t------------------- 211 (543)
T 1nir_A 158 AGQIALVDGDSKK--IVKVIDTGYA-VHISRMSA----SGRYLLVIGRDARIDMIDLWAKE------------------- 211 (543)
T ss_dssp GTEEEEEETTTCC--EEEEEECSTT-EEEEEECT----TSCEEEEEETTSEEEEEETTSSS-------------------
T ss_pred CCeEEEEECCCce--EEEEEecCcc-cceEEECC----CCCEEEEECCCCeEEEEECcCCC-------------------
Confidence 6899999988764 3566653323 88999999 9999999999999999999 55
Q ss_pred ccccccccCCccCeEEEEecC----CCCceEEEEee-CCCcEEEeecCCCccCcceeeecc-------CcccceEEeec-
Q 023643 80 IEPDGFLHGHDGPAYDVKFYG----GNEDALLLSCG-DDGRICGWRWKEFTESKVPINLQG-------NHVKPVLDLVN- 146 (279)
Q Consensus 80 ~~~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~-------~~~~~~~~~~~- 146 (279)
.+.+..+.. ...+..++|+| +++ +|++++ .+++|.+||..+.+....+..... +....+..+..
T Consensus 212 ~~~~~~i~~-g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s 288 (543)
T 1nir_A 212 PTKVAEIKI-GIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS 288 (543)
T ss_dssp CEEEEEEEC-CSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred CcEEEEEec-CCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEEC
Confidence 444555553 44578999999 998 888777 589999999865432221111000 00001111100
Q ss_pred C------------CCCCccc----------cCCCCCCceeEEEcCCCCeEEEe-cCCCeEEEEecCCCcEEEEeec----
Q 023643 147 H------------QHKGPWG----------ALSPVPENNAIAVDPQGGAIFSA-AGDSCAYCWDVESSRIKMVFKG---- 199 (279)
Q Consensus 147 ~------------~~~~~~~----------~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~---- 199 (279)
+ ..-..++ .......+..++|+|++++++++ ..+++|.+||+.+++++..+..
T Consensus 289 ~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~p 368 (543)
T 1nir_A 289 HEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP 368 (543)
T ss_dssp SSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSB
T ss_pred CCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCC
Confidence 0 0000000 11123346789999999977655 4588999999999999888874
Q ss_pred CCcceEEEEEcCC-CcEEEEec-CCCeEEEEeCCC-------CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643 200 HSDYLHCIVARNS-TNQIVTGS-EDGTARIWDCKS-------GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR 270 (279)
Q Consensus 200 ~~~~i~~i~~~~~-~~~l~~~~-~d~~i~vwd~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 270 (279)
|.+....+ ++|+ +..++++. .|++|.+||+.+ .++++++ ..|...+..++|+|++++|++++
T Consensus 369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l--------~~~g~~~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL--------QGQGGGSLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE--------ECSCSCCCCEECCTTCCEEEECC
T ss_pred CCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE--------EcCCCCceEEEcCCCCCcEEEec
Confidence 54433333 4676 66677775 689999999988 7888888 56767788899999999999987
Q ss_pred -------CcceEEeCC
Q 023643 271 -------ATNYVILFS 279 (279)
Q Consensus 271 -------~d~~i~~wd 279 (279)
.+++|.+||
T Consensus 440 ~~~~~~~~~~~v~v~d 455 (543)
T 1nir_A 440 TFNPDARISQSVAVFD 455 (543)
T ss_dssp TTCSSHHHHTCEEEEE
T ss_pred CCCCCcccCceEEEEE
Confidence 277999996
No 133
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=2.9e-23 Score=161.55 Aligned_cols=215 Identities=11% Similarity=0.087 Sum_probs=151.8
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEec-CCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS-SDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
+|.|++||+++.+. +.....+...+ .++|+| +++++++++ .++.|.+||+.+.
T Consensus 19 ~~~v~~~d~~~~~~--~~~~~~~~~~~-~~~~s~----dg~~l~~~~~~~~~i~~~d~~~~------------------- 72 (331)
T 3u4y_A 19 LRRISFFSTDTLEI--LNQITLGYDFV-DTAITS----DCSNVVVTSDFCQTLVQIETQLE------------------- 72 (331)
T ss_dssp GTEEEEEETTTCCE--EEEEECCCCEE-EEEECS----SSCEEEEEESTTCEEEEEECSSS-------------------
T ss_pred CCeEEEEeCcccce--eeeEEccCCcc-eEEEcC----CCCEEEEEeCCCCeEEEEECCCC-------------------
Confidence 68899999887643 44444555666 999999 888665554 5899999999873
Q ss_pred cc-cccccCCccCeEEEEecCCCCceEEEEeeCCC---cEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643 81 EP-DGFLHGHDGPAYDVKFYGGNEDALLLSCGDDG---RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL 156 (279)
Q Consensus 81 ~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (279)
+. ...+..+..+..+++|+|+++ +++++..++ .|.+||+++... ...+....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~---~~~~~~~~------------------- 128 (331)
T 3u4y_A 73 PPKVVAIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKF---ISTIPIPY------------------- 128 (331)
T ss_dssp SCEEEEEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEE---EEEEECCT-------------------
T ss_pred ceeEEecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCe---EEEEECCC-------------------
Confidence 33 444555666666699999998 888655553 899999864321 11111100
Q ss_pred CCCCCceeEEEcCCCCeEEEe-cCCCe-EEEEecCCCcEE----EEeecCCcceEEEEEcCCCcEE-EEecCCCeEEEEe
Q 023643 157 SPVPENNAIAVDPQGGAIFSA-AGDSC-AYCWDVESSRIK----MVFKGHSDYLHCIVARNSTNQI-VTGSEDGTARIWD 229 (279)
Q Consensus 157 ~~~~~i~~~~~~~~~~~l~~~-~~d~~-i~i~d~~~~~~~----~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd 229 (279)
...+++|+|++++++++ ..++. |.+|++.....+ .........+..++|+|+|+++ +++..++.|++||
T Consensus 129 ----~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 204 (331)
T 3u4y_A 129 ----DAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILE 204 (331)
T ss_dssp ----TEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ----CccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEE
Confidence 24789999999866655 45577 999998754332 1112334567999999999855 5556789999999
Q ss_pred CCCCce---EEEecCCccccccCcceeeeEEEEcCCCCEEEEEc-CcceEEeCC
Q 023643 230 CKSGKC---IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR-ATNYVILFS 279 (279)
Q Consensus 230 ~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd 279 (279)
+.+++. +..+. ....+..++|+|+|++|++++ .++.|.+||
T Consensus 205 ~~~~~~~~~~~~~~---------~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d 249 (331)
T 3u4y_A 205 TQNPENITLLNAVG---------TNNLPGTIVVSRDGSTVYVLTESTVDVFNFN 249 (331)
T ss_dssp CSSTTSCEEEEEEE---------CSSCCCCEEECTTSSEEEEECSSEEEEEEEE
T ss_pred CCCCcccceeeecc---------CCCCCceEEECCCCCEEEEEEcCCCEEEEEE
Confidence 999888 66663 224567899999999776654 577888885
No 134
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=2.8e-23 Score=161.82 Aligned_cols=213 Identities=9% Similarity=0.031 Sum_probs=149.9
Q ss_pred CCCceeeeccccccccceeeeeeccc--ceEEEEECCCCCCCCCEE-EEecCCCcEEEEeCCCCCcccccccCCccccee
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTR--TVFRTVWGPSKDGSPDTI-VIASSDGSITSYSIPSCISKLPLGLSNSKVQQL 77 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 77 (279)
.+|.|++||+.+.+. +..+..... .+..++|+| +++++ +++..++.|.+||+.++
T Consensus 9 ~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~~s~----dg~~l~v~~~~~~~v~~~d~~~~---------------- 66 (337)
T 1pby_B 9 RPDKLVVIDTEKMAV--DKVITIADAGPTPMVPMVAP----GGRIAYATVNKSESLVKIDLVTG---------------- 66 (337)
T ss_dssp TTTEEEEEETTTTEE--EEEEECTTCTTCCCCEEECT----TSSEEEEEETTTTEEEEEETTTC----------------
T ss_pred CCCeEEEEECCCCcE--EEEEEcCCCCCCccceEEcC----CCCEEEEEeCCCCeEEEEECCCC----------------
Confidence 378999999887643 444432221 578899999 88655 56667899999999874
Q ss_pred eeccccccccC-----CccCeEEEEecCCCCceEEEEee------------CCCcEEEeecCCCccCcceeeeccCcccc
Q 023643 78 LGIEPDGFLHG-----HDGPAYDVKFYGGNEDALLLSCG------------DDGRICGWRWKEFTESKVPINLQGNHVKP 140 (279)
Q Consensus 78 ~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~~------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 140 (279)
+.+..+.. |...+..++|+|+++ +|++++ .++.|.+||+.+.. ....+....
T Consensus 67 ---~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~--- 135 (337)
T 1pby_B 67 ---ETLGRIDLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLS---RRKAFEAPR--- 135 (337)
T ss_dssp ---CEEEEEECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTE---EEEEEECCS---
T ss_pred ---CeEeeEEcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCc---EEEEEeCCC---
Confidence 22222221 223567899999998 777775 57999999986432 111111100
Q ss_pred eEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec---------------------
Q 023643 141 VLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG--------------------- 199 (279)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--------------------- 199 (279)
.+.+++|+|++++++++ ++.|++||+.+++.+..+..
T Consensus 136 --------------------~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 193 (337)
T 1pby_B 136 --------------------QITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHE 193 (337)
T ss_dssp --------------------SCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCT
T ss_pred --------------------CcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeecc
Confidence 14567778877777666 46677777776665544322
Q ss_pred ---------------------------------------------CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCc
Q 023643 200 ---------------------------------------------HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGK 234 (279)
Q Consensus 200 ---------------------------------------------~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~ 234 (279)
+...+.+++|+|++++++++ ++.|.+||+.+++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~ 271 (337)
T 1pby_B 194 SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA 271 (337)
T ss_dssp TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE
T ss_pred CCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCc
Confidence 22235578999999999888 7999999999998
Q ss_pred eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 235 CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+..+.. ...+.+++|+|++++|++++.++.|.+||
T Consensus 272 ~~~~~~~---------~~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 272 SIKRVPL---------PHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEEEEEC---------SSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred CcceecC---------CCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 8887732 13568899999999999999999999996
No 135
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=2.8e-23 Score=162.14 Aligned_cols=224 Identities=8% Similarity=0.089 Sum_probs=149.7
Q ss_pred CCceeeeccc--cccccceeeeeecccceEEEEECCCCCCCCCEEEEec-CCCcEEEEeCCCCCcccccccCCcccceee
Q 023643 2 CGDSTNWDED--AYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS-SDGSITSYSIPSCISKLPLGLSNSKVQQLL 78 (279)
Q Consensus 2 dG~v~iw~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 78 (279)
+|.|++|+++ +.....+..+..+. .+..++|+| ++++|++++ .++.|.+|++..+..
T Consensus 59 ~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~----dg~~l~~~~~~~~~i~~~d~~~~~~--------------- 118 (343)
T 1ri6_A 59 EFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH----QGQFVFVGSYNAGNVSVTRLEDGLP--------------- 118 (343)
T ss_dssp TTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT----TSSEEEEEETTTTEEEEEEEETTEE---------------
T ss_pred CCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC----CCCEEEEEecCCCeEEEEECCCCcc---------------
Confidence 3789999987 44433444454433 789999999 888776655 588999999952110
Q ss_pred eccccccccCCccCeEEEEecCCCCceEEEEee-CCCcEEEeecCCCccCccee--eeccCcccceEEeecCCCCCcccc
Q 023643 79 GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCG-DDGRICGWRWKEFTESKVPI--NLQGNHVKPVLDLVNHQHKGPWGA 155 (279)
Q Consensus 79 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 155 (279)
.+....+..+ ..+.+++|+|+++ ++++++ .++.|++||++......... ......
T Consensus 119 -~~~~~~~~~~-~~~~~~~~s~dg~--~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~------------------ 176 (343)
T 1ri6_A 119 -VGVVDVVEGL-DGCHSANISPDNR--TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE------------------ 176 (343)
T ss_dssp -EEEEEEECCC-TTBCCCEECTTSS--EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST------------------
T ss_pred -ccccccccCC-CCceEEEECCCCC--EEEEecCCCCEEEEEEecCCCceeeecccccccCC------------------
Confidence 2233333333 3488899999998 777766 89999999986421111100 011000
Q ss_pred CCCCCCceeEEEcCCCCeEEEe-cCCCeEEEEecCC--CcE--EEEeec---C---CcceEEEEEcCCCcEEE-EecCCC
Q 023643 156 LSPVPENNAIAVDPQGGAIFSA-AGDSCAYCWDVES--SRI--KMVFKG---H---SDYLHCIVARNSTNQIV-TGSEDG 223 (279)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~--~~~--~~~~~~---~---~~~i~~i~~~~~~~~l~-~~~~d~ 223 (279)
...+..++|+|++++++++ ..++.|.+||+.. ++. ...+.. . ...+.+++|+|++++|+ ++..++
T Consensus 177 ---~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~ 253 (343)
T 1ri6_A 177 ---GAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS 253 (343)
T ss_dssp ---TCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT
T ss_pred ---CCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCC
Confidence 0125789999999977554 4789999999953 432 222221 1 23567899999998776 556899
Q ss_pred eEEEEeCC--CC--ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEc-CcceEEeCC
Q 023643 224 TARIWDCK--SG--KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR-ATNYVILFS 279 (279)
Q Consensus 224 ~i~vwd~~--~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd 279 (279)
.|.+||+. ++ +.+..+ ..+.. +..++|+|++++|++++ .++.|.+|+
T Consensus 254 ~i~v~d~~~~~~~~~~~~~~--------~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 254 LITVFSVSEDGSVLSKEGFQ--------PTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp EEEEEEECTTSCCEEEEEEE--------ECSSS-CCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred EEEEEEEcCCCCceEEeeee--------cCCCc-cceEEECCCCCEEEEecCCCCeEEEEE
Confidence 99999998 32 334444 22222 78899999999888887 589999983
No 136
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.92 E-value=8.7e-23 Score=159.94 Aligned_cols=234 Identities=12% Similarity=0.075 Sum_probs=155.9
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEec-CCCcEEEEeCCCCCcccccc-cCCcccceeee
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS-SDGSITSYSIPSCISKLPLG-LSNSKVQQLLG 79 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~ 79 (279)
++.|++|++++.....+.....+...+..++|+| ++++|++++ .++.|.+|++........+. .....
T Consensus 62 ~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp----dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~------ 131 (347)
T 3hfq_A 62 EGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE----ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSG------ 131 (347)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET----TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCC------
T ss_pred CceEEEEEecCCcEEEeeeeecCCCCCEEEEECC----CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCC------
Confidence 5789999997765455556566778899999999 899888777 78999999996421110000 00000
Q ss_pred ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643 80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV 159 (279)
Q Consensus 80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (279)
..+. ...+...+.+++|+|+++ ++++...++.|++|+++.......... +.....
T Consensus 132 ~~p~--~~~~~~~~~~~~~spdg~--l~v~~~~~~~v~~~~~~~~g~~~~~~~-----------~~~~~g---------- 186 (347)
T 3hfq_A 132 HGPR--PEQDGSHIHYTDLTPDNR--LAVIDLGSDKVYVYNVSDAGQLSEQSV-----------LTMEAG---------- 186 (347)
T ss_dssp CCSS--TTCSSCCEEEEEECTTSC--EEEEETTTTEEEEEEECTTSCEEEEEE-----------EECCTT----------
T ss_pred CCCC--ccccCCCceEEEECCCCc--EEEEeCCCCEEEEEEECCCCcEEEeee-----------EEcCCC----------
Confidence 0000 111334588999999998 888888899999999862111111000 000000
Q ss_pred CCceeEEEcCCCCeEEE-ecCCCeEEEEecCC--CcE--EEEeecCC------cceEEEEEcCCCcEE-EEecCCCeEEE
Q 023643 160 PENNAIAVDPQGGAIFS-AAGDSCAYCWDVES--SRI--KMVFKGHS------DYLHCIVARNSTNQI-VTGSEDGTARI 227 (279)
Q Consensus 160 ~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~--~~~--~~~~~~~~------~~i~~i~~~~~~~~l-~~~~~d~~i~v 227 (279)
..+..++|+|+++++++ ...++.|.+|++.. ++. +..+.... ..+..++|+|+|++| ++...++.|.+
T Consensus 187 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v 266 (347)
T 3hfq_A 187 FGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAV 266 (347)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEE
T ss_pred CCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEE
Confidence 12468999999996655 56788999999874 443 22333222 458899999999977 55667899999
Q ss_pred EeCCCC---ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC-cceEEeC
Q 023643 228 WDCKSG---KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA-TNYVILF 278 (279)
Q Consensus 228 wd~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~w 278 (279)
|++... +.+..+ ..+...+..++|+|+|++|++++. ++.|.+|
T Consensus 267 ~~~~~~g~~~~~~~~--------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 267 FAVTADGHLTLIQQI--------STEGDFPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp EEECGGGCEEEEEEE--------ECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEECCCCcEEEeEEE--------ecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 999732 334444 344456789999999998888765 4889998
No 137
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.92 E-value=1.3e-22 Score=158.88 Aligned_cols=215 Identities=14% Similarity=0.101 Sum_probs=154.3
Q ss_pred CCCceeeeccccccccceeeeeecc-cceEEEEECCCCCCCCCEE-EEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILT-RTVFRTVWGPSKDGSPDTI-VIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL 78 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 78 (279)
.++.|++||+++.+. +..+..+. ..+..++|+| +++++ +++..++.|.+||+.++
T Consensus 19 ~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~s~----dg~~~~v~~~~~~~i~~~d~~t~----------------- 75 (349)
T 1jmx_B 19 YPNNLHVVDVASDTV--YKSCVMPDKFGPGTAMMAP----DNRTAYVLNNHYGDIYGIDLDTC----------------- 75 (349)
T ss_dssp TTTEEEEEETTTTEE--EEEEECSSCCSSCEEEECT----TSSEEEEEETTTTEEEEEETTTT-----------------
T ss_pred CCCeEEEEECCCCcE--EEEEecCCCCCCceeEECC----CCCEEEEEeCCCCcEEEEeCCCC-----------------
Confidence 378999999887643 44444332 2578899999 88755 55667899999999873
Q ss_pred eccccccccC-C-----ccCeEEEEecCCCCceEEEEeeCC------------CcEEEeecCCCccCcceeeeccCcccc
Q 023643 79 GIEPDGFLHG-H-----DGPAYDVKFYGGNEDALLLSCGDD------------GRICGWRWKEFTESKVPINLQGNHVKP 140 (279)
Q Consensus 79 ~~~~~~~~~~-h-----~~~v~~~~~~~~~~~~~l~s~~~d------------g~i~iw~~~~~~~~~~~~~~~~~~~~~ 140 (279)
+.+..+.. + ...+..++|+|+++ +|++++.+ +.|.+||+.+.............
T Consensus 76 --~~~~~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---- 147 (349)
T 1jmx_B 76 --KNTFHANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP---- 147 (349)
T ss_dssp --EEEEEEESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC----
T ss_pred --cEEEEEEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC----
Confidence 33333321 1 23477899999998 88888765 89999998653222111111110
Q ss_pred eEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCC-------------------
Q 023643 141 VLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHS------------------- 201 (279)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------------------- 201 (279)
..+.+++|+|+++ +++++. .|++||+.+++.+..+..+.
T Consensus 148 -------------------~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (349)
T 1jmx_B 148 -------------------RQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQS 205 (349)
T ss_dssp -------------------SSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCC
T ss_pred -------------------CcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCC
Confidence 0267899999999 666544 39999999888777664331
Q ss_pred -------------------------------------------------cceEEEEEcC-CCcEEEEecCCCeEEEEeCC
Q 023643 202 -------------------------------------------------DYLHCIVARN-STNQIVTGSEDGTARIWDCK 231 (279)
Q Consensus 202 -------------------------------------------------~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~ 231 (279)
..+..++++| ++++++++ ++.|.+||+.
T Consensus 206 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~ 283 (349)
T 1jmx_B 206 PRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLK 283 (349)
T ss_dssp TTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETT
T ss_pred cceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECc
Confidence 1345677889 99998888 8999999999
Q ss_pred CCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 232 SGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+++.+..+.. ...+.+++|+|++++|++++.++.|.+||
T Consensus 284 ~~~~~~~~~~---------~~~~~~~~~s~dg~~l~~~~~~~~v~v~d 322 (349)
T 1jmx_B 284 QRKLIKAANL---------DHTYYCVAFDKKGDKLYLGGTFNDLAVFN 322 (349)
T ss_dssp TTEEEEEEEC---------SSCCCEEEECSSSSCEEEESBSSEEEEEE
T ss_pred cCeEEEEEcC---------CCCccceEECCCCCEEEEecCCCeEEEEe
Confidence 9998887742 12467899999999999898899999996
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=1.6e-23 Score=159.97 Aligned_cols=215 Identities=14% Similarity=0.037 Sum_probs=153.8
Q ss_pred CCceeeecccc-ccccceeeeeec-ccceEEEEECCCCCCCCCEEEEec--CCCcEEEEeCCCCCcccccccCCccccee
Q 023643 2 CGDSTNWDEDA-YRKSILKEREIL-TRTVFRTVWGPSKDGSPDTIVIAS--SDGSITSYSIPSCISKLPLGLSNSKVQQL 77 (279)
Q Consensus 2 dG~v~iw~~~~-~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 77 (279)
+|.|++||+++ ... ......+ ...+.+++|+| ++++|++++ .++..+||.++..
T Consensus 61 ~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~sp----dg~~l~~~~~~~~~~~~l~~~~~~---------------- 118 (297)
T 2ojh_A 61 EGLLYRLSLAGDPSP--EKVDTGFATICNNDHGISP----DGALYAISDKVEFGKSAIYLLPST---------------- 118 (297)
T ss_dssp TTEEEEEESSSCCSC--EECCCTTCCCBCSCCEECT----TSSEEEEEECTTTSSCEEEEEETT----------------
T ss_pred CCeEEEEeCCCCCCc--eEeccccccccccceEECC----CCCEEEEEEeCCCCcceEEEEECC----------------
Confidence 57899999887 543 3333334 47789999999 899999988 4456666665431
Q ss_pred eeccccccccCCccCeEEEEecCCCCceEEE-EeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643 78 LGIEPDGFLHGHDGPAYDVKFYGGNEDALLL-SCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL 156 (279)
Q Consensus 78 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (279)
......+..+ ..+..++|+|+++ +|+ +++.|+.+++|+++.... ....+..+
T Consensus 119 --~~~~~~~~~~-~~~~~~~~spdg~--~l~~~~~~~~~~~l~~~~~~~~--~~~~~~~~-------------------- 171 (297)
T 2ojh_A 119 --GGTPRLMTKN-LPSYWHGWSPDGK--SFTYCGIRDQVFDIYSMDIDSG--VETRLTHG-------------------- 171 (297)
T ss_dssp --CCCCEECCSS-SSEEEEEECTTSS--EEEEEEEETTEEEEEEEETTTC--CEEECCCS--------------------
T ss_pred --CCceEEeecC-CCccceEECCCCC--EEEEEECCCCceEEEEEECCCC--cceEcccC--------------------
Confidence 1112233333 3488999999998 665 788899999999753211 11111111
Q ss_pred CCCCCceeEEEcCCCCeEEEec-CCCeEEEEecC-CCcEEEEeecCCcceEEEEEcCCCcEEEEecCC-----------C
Q 023643 157 SPVPENNAIAVDPQGGAIFSAA-GDSCAYCWDVE-SSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED-----------G 223 (279)
Q Consensus 157 ~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----------~ 223 (279)
...+.+++|+|+++.+++++ .++.+++|++. .+.....+..|...+.+++|+|++++|++++.+ +
T Consensus 172 --~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 249 (297)
T 2ojh_A 172 --EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDV 249 (297)
T ss_dssp --SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEE
T ss_pred --CCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCce
Confidence 11368999999999877665 58899999986 566677787788889999999999999888766 5
Q ss_pred eEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcc
Q 023643 224 TARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATN 273 (279)
Q Consensus 224 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 273 (279)
.|.+||+.+++....... .+|...+..++|+|++++|++++.+.
T Consensus 250 ~l~~~d~~~~~~~~~~~~------~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 250 RVQLMDMDGGNVETLFDL------FGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEETTSCSCEEEEEE------EESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEEecCCCCceeeecc------CCCCcccccceECCCCCEEEEEEecc
Confidence 699999988766443311 35667788999999999998887653
No 139
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.91 E-value=8.5e-23 Score=164.22 Aligned_cols=170 Identities=10% Similarity=0.051 Sum_probs=124.4
Q ss_pred cccceEEEEECCCCCCCCCEEE----EecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEec
Q 023643 24 LTRTVFRTVWGPSKDGSPDTIV----IASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFY 99 (279)
Q Consensus 24 ~~~~v~~~~~~~~~~~~~~~l~----~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 99 (279)
+...|.+++|+| ++++|| +|+.|++|+|||+.+...... ..... ......+.+|...|.+++|+
T Consensus 91 ~~~~v~~l~~sp----dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~------~~~~~--~~~~~~~~~h~~~V~~v~~~ 158 (434)
T 2oit_A 91 MKFPIHHLALSC----DNLTLSACMMSSEYGSIIAFFDVRTFSNEAK------QQKRP--FAYHKLLKDAGGMVIDMKWN 158 (434)
T ss_dssp CSSCEEEEEECT----TSCEEEEEEEETTTEEEEEEEEHHHHHCTTC------SSCCC--SEEEECCCSGGGSEEEEEEC
T ss_pred CCCcccEEEEcC----CCCEEEEEEeccCCCceEEEEEccccccCCc------CCcce--eeeeeccCCCCCceEEEEEC
Confidence 456799999999 899999 789999999999875210000 00000 11234567799999999999
Q ss_pred CC-CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec
Q 023643 100 GG-NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA 178 (279)
Q Consensus 100 ~~-~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 178 (279)
|+ +. +|++++.||+|++||+++. .......+ +.. .|.+++|+|++++|++|+
T Consensus 159 p~~~~--~las~s~Dg~v~iwD~~~~---~~~~~~~~-~~~---------------------~v~~v~wspdg~~lasgs 211 (434)
T 2oit_A 159 PTVPS--MVAVCLADGSIAVLQVTET---VKVCATLP-STV---------------------AVTSVCWSPKGKQLAVGK 211 (434)
T ss_dssp SSCTT--EEEEEETTSCEEEEEESSS---EEEEEEEC-GGG---------------------CEEEEEECTTSSCEEEEE
T ss_pred CCCCC--EEEEEECCCeEEEEEcCCC---cceeeccC-CCC---------------------ceeEEEEcCCCCEEEEEc
Confidence 98 55 9999999999999998753 11111111 111 379999999999999999
Q ss_pred CCCeEEEEecCCCcEEEEeecC-------CcceEEEEEcCCCcEEEEe-cCCC------eEEEEeCCCC
Q 023643 179 GDSCAYCWDVESSRIKMVFKGH-------SDYLHCIVARNSTNQIVTG-SEDG------TARIWDCKSG 233 (279)
Q Consensus 179 ~d~~i~i~d~~~~~~~~~~~~~-------~~~i~~i~~~~~~~~l~~~-~~d~------~i~vwd~~~~ 233 (279)
.||.|++||++ ++....+..| ...+.+++|++++.++++. +.|| .+++|+++..
T Consensus 212 ~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 212 QNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 99999999998 6666665543 2389999999988777543 3343 3899999865
No 140
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=2.9e-23 Score=178.20 Aligned_cols=236 Identities=11% Similarity=0.041 Sum_probs=160.4
Q ss_pred ceeeeccccccccceeeeeecc----------------------cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCC
Q 023643 4 DSTNWDEDAYRKSILKEREILT----------------------RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSC 61 (279)
Q Consensus 4 ~v~iw~~~~~~~~~~~~~~~~~----------------------~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 61 (279)
.|++||+++.+...+.....+. ..|.+++|+| |+++|++++. +.|++||+.++
T Consensus 65 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp----Dg~~l~~~~~-~~i~~~d~~~~ 139 (741)
T 2ecf_A 65 DLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP----DAQRLLFPLG-GELYLYDLKQE 139 (741)
T ss_dssp EEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT----TSSEEEEEET-TEEEEEESSSC
T ss_pred EEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC----CCCEEEEEeC-CcEEEEECCCC
Confidence 8999998876543222222222 3488999999 9999999886 89999999873
Q ss_pred CcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccce
Q 023643 62 ISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPV 141 (279)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 141 (279)
. ......+..|...+..++|+|+++ +|+.++ ++.|++||+..... ...... ....+
T Consensus 140 ~-----------------~~~~~~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~---~~~~~~-~~~~~ 195 (741)
T 2ecf_A 140 G-----------------KAAVRQLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQ---MQLTAD-GSTTI 195 (741)
T ss_dssp S-----------------TTSCCBCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEE---EECCCC-CCSSE
T ss_pred C-----------------cceEEEcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCE---EEeccC-Cccce
Confidence 0 003345566778899999999998 888887 56899999865321 111111 10000
Q ss_pred EEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCC---------------------------------eEEEEec
Q 023643 142 LDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDS---------------------------------CAYCWDV 188 (279)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---------------------------------~i~i~d~ 188 (279)
.. . ...|........+..++|+||+++|++++.|+ .|++||+
T Consensus 196 ~~---g--~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~ 270 (741)
T 2ecf_A 196 GN---G--IAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP 270 (741)
T ss_dssp EE---S--CCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS
T ss_pred ec---c--ccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC
Confidence 00 0 00000000001247899999999999887665 8899999
Q ss_pred CC-CcEEEEee--cCCcceEEEEEcCCCcEEEEecC-----CCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEc
Q 023643 189 ES-SRIKMVFK--GHSDYLHCIVARNSTNQIVTGSE-----DGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLD 260 (279)
Q Consensus 189 ~~-~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 260 (279)
.+ ++...... .|...+..++| |+|++|+.++. +..|++||+.+++....+..+. ......+..++|+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~----~~~~~~~~~~~~s 345 (741)
T 2ecf_A 271 AEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS----PTWVPLHNSLRFL 345 (741)
T ss_dssp STTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC----SSCCCCCSCCEEC
T ss_pred CCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC----CCcCCcCCceEEC
Confidence 98 87655443 37788999999 99999987653 6789999999998877663211 0111145688999
Q ss_pred CCCCEEEEEcCcceEEeC
Q 023643 261 ASESWLVRVRATNYVILF 278 (279)
Q Consensus 261 ~~~~~l~~~~~d~~i~~w 278 (279)
|||+++++++.||.+.+|
T Consensus 346 pdg~~~~~~~~~g~~~l~ 363 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLY 363 (741)
T ss_dssp TTSCEEEEECTTSSCEEE
T ss_pred CCCeEEEEecCCCccEEE
Confidence 999999999999877776
No 141
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=4.2e-23 Score=176.72 Aligned_cols=238 Identities=11% Similarity=0.014 Sum_probs=158.2
Q ss_pred CCCceeeeccccccccceeeeeeccc---ceEEEEECCCCCCCCCEEEEecCC---------CcEEEEeCCCCCcccccc
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTR---TVFRTVWGPSKDGSPDTIVIASSD---------GSITSYSIPSCISKLPLG 68 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~l~~~~~d---------g~i~iw~~~~~~~~~~~~ 68 (279)
.||+|++||+++.+. ...+..|.. .|.+++|+| |+++|++++.+ +.|.+||+.++..
T Consensus 35 ~dg~i~~~d~~~g~~--~~~~~~~~~~~~~v~~~~~Sp----Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~----- 103 (723)
T 1xfd_A 35 QKGTVRLWNVETNTS--TVLIEGKKIESLRAIRYEISP----DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP----- 103 (723)
T ss_dssp SSSCEEEBCGGGCCC--EEEECTTTTTTTTCSEEEECT----TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-----
T ss_pred CCCCEEEEECCCCcE--EEEeccccccccccceEEECC----CCCEEEEEecCccceeecceeeEEEEECCCCce-----
Confidence 378999999988753 334444543 499999999 99999998764 7788999987421
Q ss_pred cCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCC
Q 023643 69 LSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQ 148 (279)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (279)
..+....+|...+..++|+|+++ .|+.++. +.|++|++..... ...........+.. +
T Consensus 104 ------------~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~---~~~~~~~~~~~~~~----g 161 (723)
T 1xfd_A 104 ------------QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQA---IRVVSTGKEGVIYN----G 161 (723)
T ss_dssp ------------EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCC---EEEECCCBTTTEEE----E
T ss_pred ------------EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCce---EEEecCCCCCceEC----c
Confidence 11233345666688999999998 8888876 7999999865321 11111111100000 0
Q ss_pred CCCccc-cCCCCCCceeEEEcCCCCeEEEecCCC----------------------------------eEEEEecCCCcE
Q 023643 149 HKGPWG-ALSPVPENNAIAVDPQGGAIFSAAGDS----------------------------------CAYCWDVESSRI 193 (279)
Q Consensus 149 ~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~----------------------------------~i~i~d~~~~~~ 193 (279)
.. .|. .......+.+++|+||++.|++++.++ .|++||+.+++.
T Consensus 162 ~~-~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~ 240 (723)
T 1xfd_A 162 LS-DWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH 240 (723)
T ss_dssp EC-CHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC
T ss_pred cc-ceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce
Confidence 00 000 000001247899999999998876442 799999998876
Q ss_pred EEEeecC------CcceEEEEEcCCCcEEEEecC----CCeEEEEeCCCCceEEEecCCccccccCcceee----eEEEE
Q 023643 194 KMVFKGH------SDYLHCIVARNSTNQIVTGSE----DGTARIWDCKSGKCIKVIDPVKDKQLKGVISCV----SCITL 259 (279)
Q Consensus 194 ~~~~~~~------~~~i~~i~~~~~~~~l~~~~~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~ 259 (279)
...+..+ ...+..++|+|||++|++.+. +..|++||+.+++....+.. .+...+ ..++|
T Consensus 241 ~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-------~~~~~~~~~~~~~~~ 313 (723)
T 1xfd_A 241 DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED-------ESEAWLHRQNEEPVF 313 (723)
T ss_dssp CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE-------ECSSCCCCCCCCCEE
T ss_pred eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe-------ccCCEEeccCCCceE
Confidence 5666544 678899999999998876643 46799999999987766521 122233 37899
Q ss_pred cCCCCEEEE--EcCcc------eEEeCC
Q 023643 260 DASESWLVR--VRATN------YVILFS 279 (279)
Q Consensus 260 ~~~~~~l~~--~~~d~------~i~~wd 279 (279)
+|||+.|+. +..++ .|.+||
T Consensus 314 spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 314 SKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp CTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred cCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 999997775 44566 455554
No 142
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=6.4e-22 Score=155.16 Aligned_cols=215 Identities=11% Similarity=0.109 Sum_probs=156.3
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCE-EEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDT-IVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
+|.|.+||.++.+. +..+.. ...+..++|+| ++++ +++...++.|.+||..++
T Consensus 68 ~~~v~~~d~~~~~~--~~~~~~-~~~~~~~~~s~----dg~~l~v~~~~~~~v~~~d~~~~------------------- 121 (353)
T 3vgz_A 68 GGVVYRLDPVTLEV--TQAIHN-DLKPFGATINN----TTQTLWFGNTVNSAVTAIDAKTG------------------- 121 (353)
T ss_dssp SEEEEEECTTTCCE--EEEEEE-SSCCCSEEEET----TTTEEEEEETTTTEEEEEETTTC-------------------
T ss_pred CccEEEEcCCCCeE--EEEEec-CCCcceEEECC----CCCEEEEEecCCCEEEEEeCCCC-------------------
Confidence 56899999887643 444442 34578899999 8885 455666899999999884
Q ss_pred cccccccCCcc---------CeEEEEecCCCCceEEEEee--CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCC
Q 023643 81 EPDGFLHGHDG---------PAYDVKFYGGNEDALLLSCG--DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQH 149 (279)
Q Consensus 81 ~~~~~~~~h~~---------~v~~~~~~~~~~~~~l~s~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (279)
+.+..+..+.. .+.++.|+|+++ ++++++ .++.|.+||+++.. ....+....
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~i~~~d~~~~~---~~~~~~~~~------------ 184 (353)
T 3vgz_A 122 EVKGRLVLDDRKRTEEVRPLQPRELVADDATN--TVYISGIGKESVIWVVDGGNIK---LKTAIQNTG------------ 184 (353)
T ss_dssp CEEEEEESCCCCCCSSCCCCEEEEEEEETTTT--EEEEEEESSSCEEEEEETTTTE---EEEEECCCC------------
T ss_pred eeEEEEecCCCccccccCCCCCceEEECCCCC--EEEEEecCCCceEEEEcCCCCc---eEEEecCCC------------
Confidence 33333332221 268899999998 666554 58899999986432 111111000
Q ss_pred CCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec----CCcceEEEEEcCCCcEEEEec-CCCe
Q 023643 150 KGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG----HSDYLHCIVARNSTNQIVTGS-EDGT 224 (279)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~i~~i~~~~~~~~l~~~~-~d~~ 224 (279)
..+..++|+|+++.+++++.++.|.+||+.+++.+..+.. +...+..++|+|++++++.++ .++.
T Consensus 185 ----------~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 254 (353)
T 3vgz_A 185 ----------KMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAE 254 (353)
T ss_dssp ----------TTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSE
T ss_pred ----------CccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCE
Confidence 0146889999999999999999999999999998887764 455688999999998766555 4599
Q ss_pred EEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEE-cCcceEEeCC
Q 023643 225 ARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV-RATNYVILFS 279 (279)
Q Consensus 225 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~wd 279 (279)
|.+||+.+++.+..+... . ...++|+|++++++++ ..++.|.+||
T Consensus 255 v~~~d~~~~~~~~~~~~~--------~--~~~~~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 255 VLVVDTRNGNILAKVAAP--------E--SLAVLFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp EEEEETTTCCEEEEEECS--------S--CCCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCcEEEEEEcC--------C--CceEEECCCCCEEEEEECCCCeEEEEE
Confidence 999999999988887431 1 1468999999965554 4789999986
No 143
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=6.7e-22 Score=153.80 Aligned_cols=229 Identities=10% Similarity=0.022 Sum_probs=153.5
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCC---cEEEEeCCCCCcccccccCCcccceee
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDG---SITSYSIPSCISKLPLGLSNSKVQQLL 78 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~ 78 (279)
++.|++||+++... .......+..+..+++|+| ++++|+++..++ .|.+||+.+
T Consensus 61 ~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~s~----dg~~l~~~~~~~~~~~i~v~d~~~------------------ 117 (331)
T 3u4y_A 61 CQTLVQIETQLEPP-KVVAIQEGQSSMADVDITP----DDQFAVTVTGLNHPFNMQSYSFLK------------------ 117 (331)
T ss_dssp TCEEEEEECSSSSC-EEEEEEECSSCCCCEEECT----TSSEEEECCCSSSSCEEEEEETTT------------------
T ss_pred CCeEEEEECCCCce-eEEecccCCCCccceEECC----CCCEEEEecCCCCcccEEEEECCC------------------
Confidence 56899999887642 1445555666665599999 899998665553 899999987
Q ss_pred eccccccccCCccCeEEEEecCCCCceEEEEeeCCCc-EEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643 79 GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGR-ICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS 157 (279)
Q Consensus 79 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (279)
++.+..+..+ ....+++|+|+++ .++++...++. |.+|+++.... ...... ... ..
T Consensus 118 -~~~~~~~~~~-~~~~~~~~spdg~-~l~~~~~~~~~~i~~~~~~~~g~---~~~~~~-------~~~-~~--------- 174 (331)
T 3u4y_A 118 -NKFISTIPIP-YDAVGIAISPNGN-GLILIDRSSANTVRRFKIDADGV---LFDTGQ-------EFI-SG--------- 174 (331)
T ss_dssp -TEEEEEEECC-TTEEEEEECTTSS-CEEEEEETTTTEEEEEEECTTCC---EEEEEE-------EEE-CS---------
T ss_pred -CCeEEEEECC-CCccceEECCCCC-EEEEEecCCCceEEEEEECCCCc---EeecCC-------ccc-cC---------
Confidence 3444444433 3468999999997 24455566688 99999864211 000000 000 00
Q ss_pred CCCCceeEEEcCCCCeEEE-ecCCCeEEEEecCCCcE---EEEeecCCcceEEEEEcCCCcEEEEe-cCCCeEEEEeCCC
Q 023643 158 PVPENNAIAVDPQGGAIFS-AAGDSCAYCWDVESSRI---KMVFKGHSDYLHCIVARNSTNQIVTG-SEDGTARIWDCKS 232 (279)
Q Consensus 158 ~~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~---~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~vwd~~~ 232 (279)
......++|+|+++++++ +..++.|++||+.+++. +..+.. ...+..++|+|+|++++.+ ..++.|.+||+.+
T Consensus 175 -~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~ 252 (331)
T 3u4y_A 175 -GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS 252 (331)
T ss_dssp -SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred -CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence 012578999999996654 45689999999999887 777764 4667899999999976555 4588899999999
Q ss_pred Cce--EEEecCCccccccCcceeeeEEEEcCCCCEEEEE-cCcceEEeCC
Q 023643 233 GKC--IKVIDPVKDKQLKGVISCVSCITLDASESWLVRV-RATNYVILFS 279 (279)
Q Consensus 233 ~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~wd 279 (279)
++. +..+...... ..........++|+|++++|+++ ..++.|.+||
T Consensus 253 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 253 GTLSFVKSFGHGLLI-DPRPLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp TEEEEEEEEECCCCC-CCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred Cceeeeccccccccc-CCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 877 4333211000 00111122568999999988655 4567999996
No 144
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=3.1e-22 Score=165.17 Aligned_cols=231 Identities=10% Similarity=0.057 Sum_probs=160.5
Q ss_pred CCceeeeccccccccceeeeee----------ccc-ceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccC
Q 023643 2 CGDSTNWDEDAYRKSILKEREI----------LTR-TVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLS 70 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~----------~~~-~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 70 (279)
+++|++||.++.+ .++.+.. |.+ .+.++.++|. .+.++++...+++|.+||+.+....
T Consensus 247 ~~~v~v~D~~t~~--~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~---~~~~~vs~~~~g~i~vvd~~~~~~l------ 315 (543)
T 1nir_A 247 PPQFAIMDGETLE--PKQIVSTRGMTVDTQTYHPEPRVAAIIASHE---HPEFIVNVKETGKVLLVNYKDIDNL------ 315 (543)
T ss_dssp SSEEEEEETTTCC--EEEEEECCEECSSSCCEESCCCEEEEEECSS---SSEEEEEETTTTEEEEEECTTSSSC------
T ss_pred CCeEEEEeccccc--cceeecccCcccCccccccCCceEEEEECCC---CCEEEEEECCCCeEEEEEecCCCcc------
Confidence 6889999987654 3444432 333 7899999993 4556777888999999999873210
Q ss_pred CcccceeeeccccccccCCccCeEEEEecCCCCceEEEE-eeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCC
Q 023643 71 NSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLS-CGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQH 149 (279)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (279)
.+..+ .+...+..+.|+|+++ +|++ +..+++|.+||+.+.+ ....+..... .+
T Consensus 316 -----------~~~~i-~~~~~~~~~~~spdg~--~l~va~~~~~~v~v~D~~tg~---l~~~i~~g~~---------ph 369 (543)
T 1nir_A 316 -----------TVTSI-GAAPFLHDGGWDSSHR--YFMTAANNSNKVAVIDSKDRR---LSALVDVGKT---------PH 369 (543)
T ss_dssp -----------EEEEE-ECCSSCCCEEECTTSC--EEEEEEGGGTEEEEEETTTTE---EEEEEECSSS---------BC
T ss_pred -----------eeEEe-ccCcCccCceECCCCC--EEEEEecCCCeEEEEECCCCe---EEEeeccCCC---------CC
Confidence 00122 2455677899999998 6654 4568999999987542 2222221100 00
Q ss_pred CCccccCCCCCCceeEEEcCC-CCeEEEec-CCCeEEEEecCC-------CcEEEEeecCCcceEEEEEcCCCcEEEEec
Q 023643 150 KGPWGALSPVPENNAIAVDPQ-GGAIFSAA-GDSCAYCWDVES-------SRIKMVFKGHSDYLHCIVARNSTNQIVTGS 220 (279)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~-~d~~i~i~d~~~-------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 220 (279)
......+ ++|+ +..++++. .|++|.+||+.+ ++.++++..|...+..++++|++++|++++
T Consensus 370 ---------~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 370 ---------PGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp ---------CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred ---------CCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence 0001222 4677 55566665 589999999998 899999999998899999999999999987
Q ss_pred -------CCCeEEEEeCCCCceE-EEecCCccccccCcceeeeEEEEcCCCCEEEEE-----cCcceEEeCC
Q 023643 221 -------EDGTARIWDCKSGKCI-KVIDPVKDKQLKGVISCVSCITLDASESWLVRV-----RATNYVILFS 279 (279)
Q Consensus 221 -------~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~d~~i~~wd 279 (279)
.+++|.|||+.+++.. ..+....-..+..+...+..+.|+|+|+.|+.+ +.|+.|.|||
T Consensus 440 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 440 TFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp TTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred CCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence 2779999999998877 444211101113456789999999999998866 2479999997
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=3.5e-21 Score=150.94 Aligned_cols=212 Identities=14% Similarity=0.059 Sum_probs=153.6
Q ss_pred CCceeeeccccccccceeeeeeccc---------ceEEEEECCCCCCCCCEEEEec--CCCcEEEEeCCCCCcccccccC
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTR---------TVFRTVWGPSKDGSPDTIVIAS--SDGSITSYSIPSCISKLPLGLS 70 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~ 70 (279)
++.|.+||.++.+. +..+..+.. .+.+++|+| +++++++++ .++.|.+||..+
T Consensus 110 ~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~----dg~~l~~~~~~~~~~i~~~d~~~---------- 173 (353)
T 3vgz_A 110 NSAVTAIDAKTGEV--KGRLVLDDRKRTEEVRPLQPRELVADD----ATNTVYISGIGKESVIWVVDGGN---------- 173 (353)
T ss_dssp TTEEEEEETTTCCE--EEEEESCCCCCCSSCCCCEEEEEEEET----TTTEEEEEEESSSCEEEEEETTT----------
T ss_pred CCEEEEEeCCCCee--EEEEecCCCccccccCCCCCceEEECC----CCCEEEEEecCCCceEEEEcCCC----------
Confidence 57899999887643 344433321 278899999 888777665 578999999987
Q ss_pred CcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCC
Q 023643 71 NSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHK 150 (279)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (279)
++.+..+..+...+.+++|+|+++ ++++++.++.|.+||+.+... .........
T Consensus 174 ---------~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~i~~~d~~~~~~---~~~~~~~~~------------ 227 (353)
T 3vgz_A 174 ---------IKLKTAIQNTGKMSTGLALDSEGK--RLYTTNADGELITIDTADNKI---LSRKKLLDD------------ 227 (353)
T ss_dssp ---------TEEEEEECCCCTTCCCCEEETTTT--EEEEECTTSEEEEEETTTTEE---EEEEECCCS------------
T ss_pred ---------CceEEEecCCCCccceEEECCCCC--EEEEEcCCCeEEEEECCCCeE---EEEEEcCCC------------
Confidence 444455554555678899999998 899999999999999865321 111111000
Q ss_pred CccccCCCCCCceeEEEcCCCCeEEEecC-CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEE-EEecCCCeEEEE
Q 023643 151 GPWGALSPVPENNAIAVDPQGGAIFSAAG-DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQI-VTGSEDGTARIW 228 (279)
Q Consensus 151 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vw 228 (279)
.+...+..++|+|+++.+++++. ++.|.+||+.+++.+..+..... ..++|+|+++++ ++...++.|.+|
T Consensus 228 ------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~ 299 (353)
T 3vgz_A 228 ------GKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVI 299 (353)
T ss_dssp ------SSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEE
T ss_pred ------CCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEE
Confidence 00112578999999997776654 59999999999998888775432 579999999865 455579999999
Q ss_pred eCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643 229 DCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT 272 (279)
Q Consensus 229 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 272 (279)
|+.+++.+..+.. ...+.+++|+|++++|+++..+
T Consensus 300 d~~~~~~~~~~~~---------~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 300 DAKSYKVVKTFDT---------PTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp ETTTTEEEEEEEC---------CSEEEEEEECTTSCEEEEEEEC
T ss_pred ECCCCeEEEEEec---------CCCCCeEEEcCCCCEEEEEEcc
Confidence 9999998888742 2357899999999977766544
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.89 E-value=4.1e-21 Score=150.43 Aligned_cols=239 Identities=11% Similarity=0.077 Sum_probs=150.4
Q ss_pred CCceeeeccccc--cccceeeeeecccceEEEEECCCCCCCCCEEEEec--CCCcEEEEeCCCCCcccccccCCccccee
Q 023643 2 CGDSTNWDEDAY--RKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS--SDGSITSYSIPSCISKLPLGLSNSKVQQL 77 (279)
Q Consensus 2 dG~v~iw~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 77 (279)
++.|.+|+++.. ....+ ....+......++|+| ++++++++. .++.|.+|++.++.
T Consensus 15 ~~~i~v~~~d~~tg~~~~~-~~~~~~~~p~~~a~sp----dg~l~~~~~~~~~~~v~~~~~~~g~--------------- 74 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTND-GLLAATQNPTYLALSA----KDCLYSVDKEDDEGGIAAWQIDGQT--------------- 74 (347)
T ss_dssp CCEEEEEEEETTTTEEEEE-EEEEECSCCCCEEECT----TCEEEEEEEETTEEEEEEEEEETTE---------------
T ss_pred CCCEEEEEEcCCCCeEEEe-eeeeccCCcceEEEcc----CCeEEEEEecCCCceEEEEEecCCc---------------
Confidence 345778776543 22222 2334557788899999 888444443 26899999997532
Q ss_pred eeccccccccCCccCeEEEEecCCCCceEEEEee-CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643 78 LGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCG-DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL 156 (279)
Q Consensus 78 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (279)
.+.+..+..+...+..++|+|+++ +|++++ .++.|++|+++............. .. ..+. ..
T Consensus 75 --~~~~~~~~~~~~~p~~~a~spdg~--~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~-----------~~-~~p~-~~ 137 (347)
T 3hfq_A 75 --AHKLNTVVAPGTPPAYVAVDEARQ--LVYSANYHKGTAEVMKIAADGALTLTDTVQH-----------SG-HGPR-PE 137 (347)
T ss_dssp --EEEEEEEEEESCCCSEEEEETTTT--EEEEEETTTTEEEEEEECTTSCEEEEEEEEC-----------CC-CCSS-TT
T ss_pred --EEEeeeeecCCCCCEEEEECCCCC--EEEEEeCCCCEEEEEEeCCCCCeeecceeec-----------CC-CCCC-cc
Confidence 123333344667788999999998 787777 789999999853211111111110 00 0000 00
Q ss_pred CCCCCceeEEEcCCCCeEEEecCCCeEEEEecC-CCcEEE--EeecC-CcceEEEEEcCCCcEEEE-ecCCCeEEEEeCC
Q 023643 157 SPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVE-SSRIKM--VFKGH-SDYLHCIVARNSTNQIVT-GSEDGTARIWDCK 231 (279)
Q Consensus 157 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~--~~~~~-~~~i~~i~~~~~~~~l~~-~~~d~~i~vwd~~ 231 (279)
.....+.+++|+|+++++++...++.|.+||+. +++... .+..+ ...+..++|+|+|+++++ +..++.|.+|++.
T Consensus 138 ~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~ 217 (347)
T 3hfq_A 138 QDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYD 217 (347)
T ss_dssp CSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 111236889999999966666778999999998 554332 22322 236788999999996554 6778999999987
Q ss_pred C--CceE--EEecCCccccccCcceeeeEEEEcCCCCEEE-EEcCcceEEeCC
Q 023643 232 S--GKCI--KVIDPVKDKQLKGVISCVSCITLDASESWLV-RVRATNYVILFS 279 (279)
Q Consensus 232 ~--~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~wd 279 (279)
. ++.. ..+..... . ......+..++|+|+|++|+ +...++.|.+|+
T Consensus 218 ~~~g~~~~~~~~~~~~~-~-~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~ 268 (347)
T 3hfq_A 218 TQTGAFTQLGIVKTIPA-D-YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFA 268 (347)
T ss_dssp TTTTEEEEEEEEESSCT-T-CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEE
T ss_pred CCCCceEEeeeeeecCC-C-CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEE
Confidence 4 5432 22211100 0 01114588999999999874 556689999985
No 147
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=5.2e-22 Score=176.10 Aligned_cols=212 Identities=12% Similarity=0.053 Sum_probs=163.5
Q ss_pred CCceeeeccccccccceeeeee-----------cccceEEEEEC-CCCCCCCCEEEEecCCCcEEEEeCCCCCccccccc
Q 023643 2 CGDSTNWDEDAYRKSILKEREI-----------LTRTVFRTVWG-PSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGL 69 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 69 (279)
++.|++|+++... +..+.. |...+.+++|+ | ++++|++++ ++.|.+|++...
T Consensus 264 ~~~i~~~d~~~~~---l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p----dG~~la~~~-~~~i~~~~~~~~-------- 327 (1045)
T 1k32_A 264 GGSIYIFNPDTEK---IEKIEIGDLESPEDRIISIPSKFAEDFSPL----DGDLIAFVS-RGQAFIQDVSGT-------- 327 (1045)
T ss_dssp TTEEEEECTTTCC---EEECCCCCCCBCCSEEEECGGGGEEEEEEC----GGGCEEEEE-TTEEEEECTTSS--------
T ss_pred CCEEEEecCCceE---eeeeccCcccccccccccccccceeeecCC----CCCEEEEEE-cCEEEEEcCCCC--------
Confidence 5778889874432 223332 44579999999 9 899998887 789999998863
Q ss_pred CCcccceeeeccccccccCCcc-CeEEEEecCCCCceEEEEeeCCCcEE-EeecCCCccCcceeeeccCcccceEEeecC
Q 023643 70 SNSKVQQLLGIEPDGFLHGHDG-PAYDVKFYGGNEDALLLSCGDDGRIC-GWRWKEFTESKVPINLQGNHVKPVLDLVNH 147 (279)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~s~~~dg~i~-iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (279)
.. ..+..|.. .+..++|+ +++ .|++++.++.+. +|++.... ...+.+ +.
T Consensus 328 -----------~~-~~~~~~~~~~~~~~~~s-dg~--~l~~~s~~~~l~~~~d~~~~~----~~~l~~-~~--------- 378 (1045)
T 1k32_A 328 -----------YV-LKVPEPLRIRYVRRGGD-TKV--AFIHGTREGDFLGIYDYRTGK----AEKFEE-NL--------- 378 (1045)
T ss_dssp -----------BE-EECSCCSCEEEEEECSS-SEE--EEEEEETTEEEEEEEETTTCC----EEECCC-CC---------
T ss_pred -----------ce-EEccCCCcceEEeeeEc-CCC--eEEEEECCCceEEEEECCCCC----ceEecC-Cc---------
Confidence 22 23445666 89999999 876 888888888888 88875321 111111 11
Q ss_pred CCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCC----
Q 023643 148 QHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG---- 223 (279)
Q Consensus 148 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---- 223 (279)
..+..++|+|++++|++++.++.|++||+.+++....+..|...+.+++|+|+|++|++++.++
T Consensus 379 ------------~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~ 446 (1045)
T 1k32_A 379 ------------GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGET 446 (1045)
T ss_dssp ------------CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTT
T ss_pred ------------cceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccc
Confidence 1368999999999999999999999999999998888878999999999999999998887654
Q ss_pred ------eEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 224 ------TARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 224 ------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.|++||+.+++ ...+ ..|...+..++|+|+|++|+.++.++...+|+
T Consensus 447 ~~~~~~~i~l~d~~~g~-~~~l--------~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 447 DGYVMQAIHVYDMEGRK-IFAA--------TTENSHDYAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp CSCCEEEEEEEETTTTE-EEEC--------SCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred cCCCCCeEEEEECCCCc-EEEe--------eCCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence 89999999887 4555 46666788899999999999998876655553
No 148
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=7e-20 Score=144.19 Aligned_cols=237 Identities=7% Similarity=0.042 Sum_probs=148.9
Q ss_pred CCceeeecccc--ccccceeeeeecccceEEEEECCCCCCCCCEEEEecCC----CcEEEEeCCCCCcccccccCCcccc
Q 023643 2 CGDSTNWDEDA--YRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSD----GSITSYSIPSCISKLPLGLSNSKVQ 75 (279)
Q Consensus 2 dG~v~iw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~ 75 (279)
++.|.+|.++. .....+... +......++|+| ++++|++++.+ +.|.+|++......
T Consensus 26 ~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~sp----dg~~l~~~~~~~~~~~~v~~~~~~~~~g~----------- 88 (361)
T 3scy_A 26 SKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSA----DGKFVYSVNEFSKDQAAVSAFAFDKEKGT----------- 88 (361)
T ss_dssp CCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECT----TSSEEEEEECCSSTTCEEEEEEEETTTTE-----------
T ss_pred CCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECC----CCCEEEEEEccCCCCCcEEEEEEeCCCCc-----------
Confidence 46788887653 332233333 667788899999 89999888875 79999998752100
Q ss_pred eeeeccccccccCCccCeEEEEecCCCCceEEEEee-CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccc
Q 023643 76 QLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCG-DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWG 154 (279)
Q Consensus 76 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (279)
.+.+.....+......+++ +++ +|++++ .++.|.+|++.............. .....+..
T Consensus 89 ----~~~~~~~~~~~~~p~~~~~--dg~--~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~-----------~~g~~~~~ 149 (361)
T 3scy_A 89 ----LHLLNTQKTMGADPCYLTT--NGK--NIVTANYSGGSITVFPIGQDGALLPASDVIE-----------FKGSGPDK 149 (361)
T ss_dssp ----EEEEEEEECSSSCEEEEEE--CSS--EEEEEETTTTEEEEEEBCTTSCBCSCSEEEE-----------CCCCCSCT
T ss_pred ----EEEeeEeccCCCCcEEEEE--CCC--EEEEEECCCCEEEEEEeCCCCcCcccceeEE-----------ccCCCCCc
Confidence 1222333334556677777 565 555554 689999999864322111111000 00001111
Q ss_pred cCCCCCCceeEEEcCCCCeEEEec-CCCeEEEEecCCCc-------EE------EEeecCCcceEEEEEcCCCcEEEEec
Q 023643 155 ALSPVPENNAIAVDPQGGAIFSAA-GDSCAYCWDVESSR-------IK------MVFKGHSDYLHCIVARNSTNQIVTGS 220 (279)
Q Consensus 155 ~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~-------~~------~~~~~~~~~i~~i~~~~~~~~l~~~~ 220 (279)
.......+.+++|+|+++++++++ .++.|.+|++.... .. .....+...+..++|+|+|+++++++
T Consensus 150 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~ 229 (361)
T 3scy_A 150 ERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLIN 229 (361)
T ss_dssp TTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred cccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEc
Confidence 111122367899999999665554 58899999887533 11 11223445678999999999876666
Q ss_pred -CCCeEEEEeCCCCceE--EEecCCccccccCcceeeeEEEEcCCCCEEEEEcC--cceEEeCC
Q 023643 221 -EDGTARIWDCKSGKCI--KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA--TNYVILFS 279 (279)
Q Consensus 221 -~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~wd 279 (279)
.++.|.+||+.+++.. ..+... ..+......++|+|||++|+++.. ++.|.+|+
T Consensus 230 ~~~~~v~v~~~~~g~~~~~~~~~~~-----~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~ 288 (361)
T 3scy_A 230 EIGGTVIAFRYADGMLDEIQTVAAD-----TVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFK 288 (361)
T ss_dssp TTTCEEEEEEEETTEEEEEEEEESC-----SSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEE
T ss_pred CCCCeEEEEEecCCceEEeEEEecC-----CCCCCCcccEEECCCCCEEEEECCCCCCEEEEEE
Confidence 6999999999877542 222211 233345689999999999876655 48899985
No 149
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=3.8e-22 Score=170.85 Aligned_cols=201 Identities=8% Similarity=-0.005 Sum_probs=146.1
Q ss_pred ceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCcc---CeEEEEecCCCC
Q 023643 27 TVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDG---PAYDVKFYGGNE 103 (279)
Q Consensus 27 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~ 103 (279)
.+.+++|+| +++++++ +.||+|++||+.+ ++....+..|.. .|.+++|+|+++
T Consensus 18 ~~~~~~~sp----dg~~~~~-~~dg~i~~~d~~~-------------------g~~~~~~~~~~~~~~~v~~~~~SpDg~ 73 (723)
T 1xfd_A 18 HDPEAKWIS----DTEFIYR-EQKGTVRLWNVET-------------------NTSTVLIEGKKIESLRAIRYEISPDRE 73 (723)
T ss_dssp CCCCCCBSS----SSCBCCC-CSSSCEEEBCGGG-------------------CCCEEEECTTTTTTTTCSEEEECTTSS
T ss_pred cccccEEcC----CCcEEEE-eCCCCEEEEECCC-------------------CcEEEEeccccccccccceEEECCCCC
Confidence 467889999 8997766 7899999999988 344444555543 489999999998
Q ss_pred ceEEEEeeCC---------CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeE
Q 023643 104 DALLLSCGDD---------GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAI 174 (279)
Q Consensus 104 ~~~l~s~~~d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 174 (279)
+|++++.+ +.+.+||+.+... .......+ + ...+..++|+|+|+.|
T Consensus 74 --~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~-~---------------------~~~~~~~~~SPdG~~l 128 (723)
T 1xfd_A 74 --YALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEV-S---------------------NAKLQYAGWGPKGQQL 128 (723)
T ss_dssp --EEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTC-C---------------------SCCCSBCCBCSSTTCE
T ss_pred --EEEEEecCccceeecceeeEEEEECCCCce-EeccCCcc-c---------------------cccccccEECCCCCEE
Confidence 89988764 7788999875421 11111000 0 0125788999999999
Q ss_pred EEecCCCeEEEEecCCCcEEEEeecCCcce------------------EEEEEcCCCcEEEEecCCC-------------
Q 023643 175 FSAAGDSCAYCWDVESSRIKMVFKGHSDYL------------------HCIVARNSTNQIVTGSEDG------------- 223 (279)
Q Consensus 175 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i------------------~~i~~~~~~~~l~~~~~d~------------- 223 (279)
+.++. +.|++||+.+++.......+...+ .+++|+|||++|++++.|+
T Consensus 129 a~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~ 207 (723)
T 1xfd_A 129 IFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG 207 (723)
T ss_dssp EEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS
T ss_pred EEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC
Confidence 98885 799999999988777665544333 7899999999999887553
Q ss_pred ---------------------eEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC----cceEEeC
Q 023643 224 ---------------------TARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA----TNYVILF 278 (279)
Q Consensus 224 ---------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~~w 278 (279)
.|++||+.+++....+..+. .+..+...+..++|+|||++|++.+. +..|.+|
T Consensus 208 ~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~--~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~ 285 (723)
T 1xfd_A 208 SIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPD--DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLC 285 (723)
T ss_dssp SSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCC--CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEE
T ss_pred cCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCc--cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEE
Confidence 79999999887655653211 01234678999999999998877643 3577777
Q ss_pred C
Q 023643 279 S 279 (279)
Q Consensus 279 d 279 (279)
|
T Consensus 286 d 286 (723)
T 1xfd_A 286 D 286 (723)
T ss_dssp E
T ss_pred e
Confidence 5
No 150
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.88 E-value=1.5e-21 Score=167.65 Aligned_cols=216 Identities=13% Similarity=0.039 Sum_probs=146.2
Q ss_pred ccceEEEEECCCCCCCCCEEEEecC-CC-----cEEEEeCCCCCcccccccCCcc-cceeee--cccc---ccccCCccC
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVIASS-DG-----SITSYSIPSCISKLPLGLSNSK-VQQLLG--IEPD---GFLHGHDGP 92 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~~~~-dg-----~i~iw~~~~~~~~~~~~~~~~~-~~~~~~--~~~~---~~~~~h~~~ 92 (279)
...+.+++|+| ||++|++++. |+ .|++||+.++.....+...... ....+. .+.. ..+. ....
T Consensus 36 ~~~~~~~~~Sp----dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 110 (741)
T 2ecf_A 36 GPTLMKPKVAP----DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIA-AMTG 110 (741)
T ss_dssp CCCCEEEEECT----TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------CCEE
T ss_pred CCCCCCceEec----CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhc-cccC
Confidence 45799999999 9999999988 88 8999999885432222111000 000000 0000 0000 0134
Q ss_pred eEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCC
Q 023643 93 AYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG 172 (279)
Q Consensus 93 v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 172 (279)
+.+++|+|+++ +|++++. +.|++||+...... ....+..+ ...+..++|+|+|+
T Consensus 111 v~~~~~SpDg~--~l~~~~~-~~i~~~d~~~~~~~-~~~~l~~~----------------------~~~~~~~~~SPDG~ 164 (741)
T 2ecf_A 111 IVDYQWSPDAQ--RLLFPLG-GELYLYDLKQEGKA-AVRQLTHG----------------------EGFATDAKLSPKGG 164 (741)
T ss_dssp SCCCEECTTSS--EEEEEET-TEEEEEESSSCSTT-SCCBCCCS----------------------SSCEEEEEECTTSS
T ss_pred cceeEECCCCC--EEEEEeC-CcEEEEECCCCCcc-eEEEcccC----------------------CcccccccCCCCCC
Confidence 78899999998 8888886 99999998753100 11111111 01368999999999
Q ss_pred eEEEecCCCeEEEEecCCCcEEEEeecCCcc----------------eEEEEEcCCCcEEEEecCCC-------------
Q 023643 173 AIFSAAGDSCAYCWDVESSRIKMVFKGHSDY----------------LHCIVARNSTNQIVTGSEDG------------- 223 (279)
Q Consensus 173 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----------------i~~i~~~~~~~~l~~~~~d~------------- 223 (279)
+|+.++ ++.|++||+.+++.......+... +..++|+|||++|++++.|+
T Consensus 165 ~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p 243 (741)
T 2ecf_A 165 FVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYA 243 (741)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECS
T ss_pred EEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCC
Confidence 999887 468999999988776655444332 47799999999999987765
Q ss_pred --------------------eEEEEeCCC-CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC-----cceEEe
Q 023643 224 --------------------TARIWDCKS-GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA-----TNYVIL 277 (279)
Q Consensus 224 --------------------~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~~ 277 (279)
.|.+||+.+ ++....... ..|...+..++| |||++|++++. +..|.+
T Consensus 244 ~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~------~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~ 316 (741)
T 2ecf_A 244 DRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLG------KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVE 316 (741)
T ss_dssp SCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCC------SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEE
T ss_pred CcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCC------CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEE
Confidence 789999988 776544321 247788999999 99999997653 567777
Q ss_pred CC
Q 023643 278 FS 279 (279)
Q Consensus 278 wd 279 (279)
||
T Consensus 317 ~d 318 (741)
T 2ecf_A 317 VT 318 (741)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 151
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.88 E-value=1e-20 Score=161.55 Aligned_cols=223 Identities=11% Similarity=0.039 Sum_probs=153.1
Q ss_pred CCceeeecccc-----ccccceeeeeecccc--------------eEEEEECCCCCCCCCEEEEec--------------
Q 023643 2 CGDSTNWDEDA-----YRKSILKEREILTRT--------------VFRTVWGPSKDGSPDTIVIAS-------------- 48 (279)
Q Consensus 2 dG~v~iw~~~~-----~~~~~~~~~~~~~~~--------------v~~~~~~~~~~~~~~~l~~~~-------------- 48 (279)
|+.|++|++++ ... ......+... +.+++|+| |+++|++++
T Consensus 140 ~~~i~v~~~~~~~~~~g~~--~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp----Dg~~la~~~~d~~~~~~~~~~~~ 213 (706)
T 2z3z_A 140 NHNLYIARGGKLGEGMSRA--IAVTIDGTETLVYGQAVHQREFGIEKGTFWSP----KGSCLAFYRMDQSMVKPTPIVDY 213 (706)
T ss_dssp TTEEEEEECBCTTSCCCCC--EESCSCCBTTEEESSCCGGGCTTCCCSEEECT----TSSEEEEEEEECTTSCCEEEEEC
T ss_pred CCeEEEEecCcccccCCCc--EEeccCCCCCeEcccchhhhhcCCCceEEECC----CCCEEEEEEECCCCCceEEeecc
Confidence 67899999887 542 2222222222 48899999 999999987
Q ss_pred -------------------CCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEE
Q 023643 49 -------------------SDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLS 109 (279)
Q Consensus 49 -------------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 109 (279)
.+..|.+||+.++.. ..+.....|...+..++|+|+++ .|++
T Consensus 214 ~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~-----------------~~~~~~~~~~~~~~~~~~spdg~--~l~~ 274 (706)
T 2z3z_A 214 HPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT-----------------VYLQTGEPKEKFLTNLSWSPDEN--ILYV 274 (706)
T ss_dssp CSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE-----------------EECCCCSCTTCEEEEEEECTTSS--EEEE
T ss_pred CCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce-----------------EeeccCCCCceeEeeEEEECCCC--EEEE
Confidence 446799999987321 11111224677899999999998 8888
Q ss_pred eeCCC-----cEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC--CCCeEEEecCCCe
Q 023643 110 CGDDG-----RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP--QGGAIFSAAGDSC 182 (279)
Q Consensus 110 ~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~ 182 (279)
++.++ .|++||+.+.............. + ...+..++|+| ++++++++..++.
T Consensus 275 ~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~---------------~-----~~~~~~~~~sp~~dg~~l~~~~~~g~ 334 (706)
T 2z3z_A 275 AEVNRAQNECKVNAYDAETGRFVRTLFVETDKH---------------Y-----VEPLHPLTFLPGSNNQFIWQSRRDGW 334 (706)
T ss_dssp EEECTTSCEEEEEEEETTTCCEEEEEEEEECSS---------------C-----CCCCSCCEECTTCSSEEEEEECTTSS
T ss_pred EEeCCCCCeeEEEEEECCCCceeeEEEEccCCC---------------e-----ECccCCceeecCCCCEEEEEEccCCc
Confidence 87775 89999986531111111100000 0 00135789999 9999999999999
Q ss_pred EEEEecC-CCcEEEEeecCCcceEE-EEEcCCCcEEEEe-cCCC----eEEEEeCCCCceEEEecCCccccccCcceeee
Q 023643 183 AYCWDVE-SSRIKMVFKGHSDYLHC-IVARNSTNQIVTG-SEDG----TARIWDCKSGKCIKVIDPVKDKQLKGVISCVS 255 (279)
Q Consensus 183 i~i~d~~-~~~~~~~~~~~~~~i~~-i~~~~~~~~l~~~-~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 255 (279)
+++|+++ ++..+..+..+...+.. ++|+|+++.|+.+ +.++ .|..||+.+++ ...+ .+...+.
T Consensus 335 ~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l---------~~~~~~~ 404 (706)
T 2z3z_A 335 NHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDL---------TPESGMH 404 (706)
T ss_dssp CEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEES---------CCSSSEE
T ss_pred cEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceec---------cCCCceE
Confidence 9999886 67777888878777876 7999999877554 4444 67777877765 3343 2445688
Q ss_pred EEEEcCCCCEEEEEcCc----ceEEeCC
Q 023643 256 CITLDASESWLVRVRAT----NYVILFS 279 (279)
Q Consensus 256 ~~~~~~~~~~l~~~~~d----~~i~~wd 279 (279)
.++|+|+|++|+.+..+ +.+.+||
T Consensus 405 ~~~~spdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 405 RTQLSPDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp EEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred EEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence 99999999988876443 4588875
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=1.2e-19 Score=142.80 Aligned_cols=240 Identities=10% Similarity=0.020 Sum_probs=145.2
Q ss_pred CCceeeecccc--ccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643 2 CGDSTNWDEDA--YRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG 79 (279)
Q Consensus 2 dG~v~iw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 79 (279)
+|.|++|+++. .....+.....+......+++ . ...++++...++.|.+|++............. ...
T Consensus 74 ~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~-d----g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~-----~~~ 143 (361)
T 3scy_A 74 QAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT-N----GKNIVTANYSGGSITVFPIGQDGALLPASDVI-----EFK 143 (361)
T ss_dssp TCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE-C----SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEE-----ECC
T ss_pred CCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE-C----CCEEEEEECCCCEEEEEEeCCCCcCcccceeE-----Ecc
Confidence 37899998765 333334444445556677777 4 33344444578999999997532211100000 000
Q ss_pred ccccccccCCccCeEEEEecCCCCceEEEEe-eCCCcEEEeecCCCccC---c-ceeeeccCcccceEEeecCCCCCccc
Q 023643 80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSC-GDDGRICGWRWKEFTES---K-VPINLQGNHVKPVLDLVNHQHKGPWG 154 (279)
Q Consensus 80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iw~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (279)
+......+.+...+.+++|+|+++ +++++ ..++.|++|+++..... . .... + .........
T Consensus 144 g~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~--~----~~~~~~~~~------ 209 (361)
T 3scy_A 144 GSGPDKERQTMPHLHCVRITPDGK--YLLADDLGTDQIHKFNINPNANADNKEKFLTK--G----TPEAFKVAP------ 209 (361)
T ss_dssp CCCSCTTTCSSCCEEEEEECTTSS--EEEEEETTTTEEEEEEECTTCCTTTCCCCEEE--E----EEEEEECCT------
T ss_pred CCCCCccccCCCcceEEEECCCCC--EEEEEeCCCCEEEEEEEcCCCCcccccceeec--c----cccceecCC------
Confidence 000001122334578899999998 55554 45899999998643210 0 0000 0 000000000
Q ss_pred cCCCCCCceeEEEcCCCCeEEEec-CCCeEEEEecCCCcE--EEEee---cCCcceEEEEEcCCCcEEEEecC--CCeEE
Q 023643 155 ALSPVPENNAIAVDPQGGAIFSAA-GDSCAYCWDVESSRI--KMVFK---GHSDYLHCIVARNSTNQIVTGSE--DGTAR 226 (279)
Q Consensus 155 ~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~--~~~~~---~~~~~i~~i~~~~~~~~l~~~~~--d~~i~ 226 (279)
......++|+|+++++++++ .++.|.+||+.+++. +..+. .+......++|+|+|++|+++.. ++.|.
T Consensus 210 ----~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 210 ----GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ----TCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ----CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 01257899999999887766 689999999987754 22332 23345689999999998866655 58999
Q ss_pred EEeCC--CCc--eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEc-CcceEEeC
Q 023643 227 IWDCK--SGK--CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR-ATNYVILF 278 (279)
Q Consensus 227 vwd~~--~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~w 278 (279)
+|++. +++ .+..+ .. ...+..++|+|+|++|++++ .++.|.+|
T Consensus 286 v~~~~~~~g~~~~~~~~--------~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~ 333 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQ--------LT-GIHPRNFIITPNGKYLLVACRDTNVIQIF 333 (361)
T ss_dssp EEEECTTTCCEEEEEEE--------EC-SSCCCEEEECTTSCEEEEEETTTTEEEEE
T ss_pred EEEEcCCCCcEEEeeEe--------cC-CCCCceEEECCCCCEEEEEECCCCCEEEE
Confidence 99986 444 33333 22 34577899999999888876 67888886
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.88 E-value=1.3e-21 Score=163.46 Aligned_cols=211 Identities=11% Similarity=0.035 Sum_probs=149.1
Q ss_pred CCceeeeccccccccceeeeeecc-cceEEEEECCCCCCCCCEEEEecC---CCcEEEEeCCC--CCcccccccCCcccc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILT-RTVFRTVWGPSKDGSPDTIVIASS---DGSITSYSIPS--CISKLPLGLSNSKVQ 75 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~--~~~~~~~~~~~~~~~ 75 (279)
||+++||++++... ..+..|. ..+..++|+| + +++++++. +...++|.+.. .
T Consensus 43 ~g~~~lw~~~~g~~---~~lt~~~~~~~~~~~~sp----d-~~l~~~~~~~g~~~~~l~~~~~~~~-------------- 100 (582)
T 3o4h_A 43 EGSVNAYLYDGGET---VKLNREPINSVLDPHYGV----G-RVILVRDVSKGAEQHALFKVNTSRP-------------- 100 (582)
T ss_dssp TTEEEEEEEETTEE---EECCSSCCSEECEECTTC----S-EEEEEEECSTTSCCEEEEEEETTST--------------
T ss_pred CCceeEEEEcCCCc---EeeecccccccccccCCC----C-eEEEEeccCCCCcceEEEEEeccCC--------------
Confidence 78999999876542 3333444 6899999999 7 67777664 45567766543 2
Q ss_pred eeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcccc
Q 023643 76 QLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGA 155 (279)
Q Consensus 76 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (279)
+... .+... ..+...+|+|+++...+++++.++ +.+||+.+... . .+....
T Consensus 101 ----g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~---~-~l~~~~------------------ 151 (582)
T 3o4h_A 101 ----GEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDR-VALYALDGGGL---R-ELARLP------------------ 151 (582)
T ss_dssp ----TCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEE---E-EEEEES------------------
T ss_pred ----Cccc-cccCC-CCceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcE---E-EeecCC------------------
Confidence 1111 11111 123456888887633555555554 55999864311 1 111000
Q ss_pred CCCCCCceeEEEcCCCCeEEEecCC----CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCC--eEEEEe
Q 023643 156 LSPVPENNAIAVDPQGGAIFSAAGD----SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG--TARIWD 229 (279)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~--~i~vwd 229 (279)
..+++|+|||+++++++.+ ..|++||+.+++.. .+..|...+..++|+|||++|+++..++ .|++||
T Consensus 152 ------~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d 224 (582)
T 3o4h_A 152 ------GFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVD 224 (582)
T ss_dssp ------SCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEEC
T ss_pred ------CceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEc
Confidence 1578999999999987776 78999999988765 5677888899999999999999888888 899999
Q ss_pred CCCCceEEEecCCccccccCcceeeeEEE--------EcCCCCEEEEEcCcceEEeCC
Q 023643 230 CKSGKCIKVIDPVKDKQLKGVISCVSCIT--------LDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~d~~i~~wd 279 (279)
+.+++.. .+ ..|...+..++ |+|||.++++++.|+.+++|+
T Consensus 225 ~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 225 PRDGSVE-DL--------ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI 273 (582)
T ss_dssp TTTCCEE-EC--------CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred CCCCcEE-Ec--------cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEE
Confidence 9998877 55 45555555566 999999899999999999984
No 154
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=2.8e-21 Score=165.07 Aligned_cols=225 Identities=11% Similarity=0.012 Sum_probs=149.6
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCC-----CCcccccccCCcccce
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPS-----CISKLPLGLSNSKVQQ 76 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~~~~~~ 76 (279)
|+.|++||+++.+. ..+..+...+..++|+| ++++||++ .++.|++|++.+ +.......... ..
T Consensus 100 ~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~Sp----dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~---~~ 168 (706)
T 2z3z_A 100 QGGLVGFDMLARKV---TYLFDTNEETASLDFSP----VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGT---ET 168 (706)
T ss_dssp TTEEEEEETTTTEE---EEEECCTTCCTTCEECT----TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCB---TT
T ss_pred CCEEEEEECCCCce---EEccCCcccccCCcCCC----CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCC---CC
Confidence 57899999887542 33444667789999999 99999985 679999999987 43221111000 00
Q ss_pred eeeccccccccCCccCeEEEEecCCCCceEEEEee---------------------------------CCCcEEEeecCC
Q 023643 77 LLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCG---------------------------------DDGRICGWRWKE 123 (279)
Q Consensus 77 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---------------------------------~dg~i~iw~~~~ 123 (279)
+..+.+ ..+.+...+.++.|+|+++ +|++++ .+..|++||+.+
T Consensus 169 ~~~g~~--~~~ee~~~~~~~~~SpDg~--~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~ 244 (706)
T 2z3z_A 169 LVYGQA--VHQREFGIEKGTFWSPKGS--CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLAT 244 (706)
T ss_dssp EEESSC--CGGGCTTCCCSEEECTTSS--EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTT
T ss_pred eEcccc--hhhhhcCCCceEEECCCCC--EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCC
Confidence 000000 1122234468899999998 888887 346688888754
Q ss_pred CccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCC-----eEEEEecCCCcEEEEee
Q 023643 124 FTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDS-----CAYCWDVESSRIKMVFK 198 (279)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~ 198 (279)
... ....... .+...+.+++|+|+++.|++++.++ .|++||+.+++....+.
T Consensus 245 ~~~---~~~~~~~--------------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~ 301 (706)
T 2z3z_A 245 GKT---VYLQTGE--------------------PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLF 301 (706)
T ss_dssp TEE---EECCCCS--------------------CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEE
T ss_pred Cce---EeeccCC--------------------CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEE
Confidence 311 0000000 0112368999999999998877665 89999999984333332
Q ss_pred -c-CCc---ceEEEEEcC--CCcEEEEecCCCeEEEEeCC-CCceEEEecCCccccccCcceeeeE-EEEcCCCCEEEEE
Q 023643 199 -G-HSD---YLHCIVARN--STNQIVTGSEDGTARIWDCK-SGKCIKVIDPVKDKQLKGVISCVSC-ITLDASESWLVRV 269 (279)
Q Consensus 199 -~-~~~---~i~~i~~~~--~~~~l~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~ 269 (279)
. +.. .+.+++|+| +|+++++++.|+.++||++. +++.+..+ ..+...+.. ++|+|+++.|+.+
T Consensus 302 ~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l--------~~~~~~v~~~~~~spdg~~l~~~ 373 (706)
T 2z3z_A 302 VETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV--------TKGEWEVTNFAGFDPKGTRLYFE 373 (706)
T ss_dssp EEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC--------CCSSSCEEEEEEECTTSSEEEEE
T ss_pred EccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEec--------CCCCeEEEeeeEEcCCCCEEEEE
Confidence 2 222 246789999 99999999999999999876 56666666 455556766 7999999887665
Q ss_pred cCc
Q 023643 270 RAT 272 (279)
Q Consensus 270 ~~d 272 (279)
+.+
T Consensus 374 ~~~ 376 (706)
T 2z3z_A 374 STE 376 (706)
T ss_dssp ESS
T ss_pred ecC
Confidence 443
No 155
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.86 E-value=4e-21 Score=170.47 Aligned_cols=224 Identities=9% Similarity=0.042 Sum_probs=160.4
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
||.++||..+... .....+..|. .+..++|+| +++.|+.+ .++.|.+|++...... . +.... ..
T Consensus 223 dg~~~l~~~~~~g-~~~~~l~~~~-~~~~~~~Sp----DG~~la~~-~~~~i~~~d~~~~~l~-~--l~~~~------~~ 286 (1045)
T 1k32_A 223 DGFGQIYSTDLDG-KDLRKHTSFT-DYYPRHLNT----DGRRILFS-KGGSIYIFNPDTEKIE-K--IEIGD------LE 286 (1045)
T ss_dssp TSSCEEEEEETTS-CSCEECCCCC-SSCEEEEEE----SSSCEEEE-ETTEEEEECTTTCCEE-E--CCCCC------CC
T ss_pred cCceEEEEEeCCC-CcceEecCCC-CcceeeEcC----CCCEEEEE-eCCEEEEecCCceEee-e--eccCc------cc
Confidence 5788899755321 1233344443 466789999 89988887 5889999998432110 0 00000 00
Q ss_pred ccccccCCccCeEEEEec-CCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFY-GGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~-~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
.......|...+.+++|+ |+++ +|++++ ++.|.+|++.... ...+..+...
T Consensus 287 ~~~~~~~~~~~v~~~~~S~pdG~--~la~~~-~~~i~~~~~~~~~----~~~~~~~~~~--------------------- 338 (1045)
T 1k32_A 287 SPEDRIISIPSKFAEDFSPLDGD--LIAFVS-RGQAFIQDVSGTY----VLKVPEPLRI--------------------- 338 (1045)
T ss_dssp BCCSEEEECGGGGEEEEEECGGG--CEEEEE-TTEEEEECTTSSB----EEECSCCSCE---------------------
T ss_pred ccccccccccccceeeecCCCCC--EEEEEE-cCEEEEEcCCCCc----eEEccCCCcc---------------------
Confidence 001112355678999999 9998 788877 7899999975421 1111111110
Q ss_pred CceeEEEcCCCCeEEEecCCCeEE-EEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEe
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAY-CWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 239 (279)
.+..++|+ +++.++.++.+..+. +||+.+++.... ..|...+..++|+|+|++|++++.++.|++||+.+++....+
T Consensus 339 ~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l-~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~ 416 (1045)
T 1k32_A 339 RYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF-EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE 416 (1045)
T ss_dssp EEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC-CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred eEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEe-cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEec
Confidence 25788999 999999888888898 999987765543 478888999999999999999999999999999999887776
Q ss_pred cCCccccccCcceeeeEEEEcCCCCEEEEEcCc----------ceEEeCC
Q 023643 240 DPVKDKQLKGVISCVSCITLDASESWLVRVRAT----------NYVILFS 279 (279)
Q Consensus 240 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------~~i~~wd 279 (279)
..|...+..++|+|||++|++++.+ +.|++||
T Consensus 417 --------~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d 458 (1045)
T 1k32_A 417 --------RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD 458 (1045)
T ss_dssp --------ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred --------cCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEE
Confidence 4677788999999999999988764 4899986
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.86 E-value=9.1e-21 Score=158.45 Aligned_cols=194 Identities=10% Similarity=0.064 Sum_probs=138.9
Q ss_pred cccceEEEEECCCCCCCCCEEEEecC-CCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCC
Q 023643 24 LTRTVFRTVWGPSKDGSPDTIVIASS-DGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGN 102 (279)
Q Consensus 24 ~~~~v~~~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 102 (279)
+..+|++++|+| ||++||.++. ||+++||++.+ ++.......+...+..+.|+|+
T Consensus 20 ~~~~~~~~~~~~----DG~~la~~s~~~g~~~lw~~~~-------------------g~~~~lt~~~~~~~~~~~~spd- 75 (582)
T 3o4h_A 20 IAVEKYSLQGVV----DGDKLLVVGFSEGSVNAYLYDG-------------------GETVKLNREPINSVLDPHYGVG- 75 (582)
T ss_dssp HHSCEEEEEEEE----TTTEEEEEEEETTEEEEEEEET-------------------TEEEECCSSCCSEECEECTTCS-
T ss_pred hccchheeecCC----CCCeEEEEEccCCceeEEEEcC-------------------CCcEeeecccccccccccCCCC-
Confidence 356899999999 9999999887 99999999865 3333333333367999999998
Q ss_pred CceEEEEeeC---CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCe-EEEec
Q 023643 103 EDALLLSCGD---DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGA-IFSAA 178 (279)
Q Consensus 103 ~~~~l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~ 178 (279)
+ ++++++. +...++|.++........ .+.... .+...+|+|+++. +++..
T Consensus 76 ~--~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-----------------------~~~~~~~s~dg~~~~~~s~ 129 (582)
T 3o4h_A 76 R--VILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVK-----------------------PMRILSGVDTGEAVVFTGA 129 (582)
T ss_dssp E--EEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSC-----------------------SBEEEEEEECSSCEEEEEE
T ss_pred e--EEEEeccCCCCcceEEEEEeccCCCccc-cccCCC-----------------------CceeeeeCCCCCeEEEEec
Confidence 5 7887765 556677766431111111 111100 1345577887763 33344
Q ss_pred CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC----CeEEEEeCCCCceEEEecCCccccccCcceee
Q 023643 179 GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED----GTARIWDCKSGKCIKVIDPVKDKQLKGVISCV 254 (279)
Q Consensus 179 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v 254 (279)
.++.+.+||+.+++.......+. .+++|+|||++|++++.+ +.|++||+.+++.. .+ ..|...+
T Consensus 130 ~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l--------~~~~~~~ 197 (582)
T 3o4h_A 130 TEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VF--------DSGEGSF 197 (582)
T ss_dssp CSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EE--------CCSSCEE
T ss_pred CCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Ee--------ecCCCcc
Confidence 44555699999887766554333 789999999999988877 78999999988765 44 4667788
Q ss_pred eEEEEcCCCCEEEEEcCcc--eEEeCC
Q 023643 255 SCITLDASESWLVRVRATN--YVILFS 279 (279)
Q Consensus 255 ~~~~~~~~~~~l~~~~~d~--~i~~wd 279 (279)
..++|+|||++|+++..++ .|++||
T Consensus 198 ~~~~~SpDG~~l~~~~~~~~~~i~~~d 224 (582)
T 3o4h_A 198 SSASISPGMKVTAGLETAREARLVTVD 224 (582)
T ss_dssp EEEEECTTSCEEEEEECSSCEEEEEEC
T ss_pred ccceECCCCCEEEEccCCCeeEEEEEc
Confidence 9999999999999888888 888886
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=2.1e-21 Score=166.21 Aligned_cols=234 Identities=9% Similarity=0.016 Sum_probs=149.1
Q ss_pred CCceeeeccccccccceeeeeeccc---ceEEEEECCCCCCCCCEEEEecC---------CCcEEEEeCCCCCccccccc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTR---TVFRTVWGPSKDGSPDTIVIASS---------DGSITSYSIPSCISKLPLGL 69 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~ 69 (279)
||+|++||+++... ...+..|.. .+.+++||| ||++|++++. ++.|++||+.++
T Consensus 35 d~~i~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~Sp----Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g-------- 100 (719)
T 1z68_A 35 DNNIVLYNIETGQS--YTILSNRTMKSVNASNYGLSP----DRQFVYLESDYSKLWRYSYTATYYIYDLSNG-------- 100 (719)
T ss_dssp TSCEEEEESSSCCE--EEEECHHHHHTTTCSEEEECT----TSSEEEEEEEEEECSSSCEEEEEEEEETTTT--------
T ss_pred CCCEEEEEcCCCcE--EEEEccccccccceeeEEECC----CCCeEEEEecCceeEEeecceEEEEEECCCC--------
Confidence 78999999988753 333443433 389999999 9999999876 789999999874
Q ss_pred CCcccceeeecccc--ccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecC
Q 023643 70 SNSKVQQLLGIEPD--GFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNH 147 (279)
Q Consensus 70 ~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (279)
+.+ ..+ ...+..++|+|+++ .|+.+. ++.|++|++...... ......+...+..
T Consensus 101 -----------~~~~~~~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~---~l~~~~~~~~v~~---- 156 (719)
T 1z68_A 101 -----------EFVRGNEL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPF---QITFNGRENKIFN---- 156 (719)
T ss_dssp -----------EECCSSCC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCE---ECCCCCBTTTEEE----
T ss_pred -----------ccccceec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcE---EEecCCCcCCeEc----
Confidence 221 111 24588899999998 888875 789999998654221 1111111111110
Q ss_pred CCCCccc-cCCCCCCceeEEEcCCCCeEEEecCCC----------------------------------eEEEEecCCCc
Q 023643 148 QHKGPWG-ALSPVPENNAIAVDPQGGAIFSAAGDS----------------------------------CAYCWDVESSR 192 (279)
Q Consensus 148 ~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~----------------------------------~i~i~d~~~~~ 192 (279)
++. .|- .........+++|+|||+.|++++.|. .|++||+.+++
T Consensus 157 g~~-~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~ 235 (719)
T 1z68_A 157 GIP-DWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPA 235 (719)
T ss_dssp SSC-CHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHH
T ss_pred ccc-cceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCC
Confidence 000 000 000000125899999999999887542 78999999876
Q ss_pred EE---E-----EeecCCcceEEEEEcCCCcEEEEecCC----CeEEEEe----CCCCceEEEecCCccccccCcceeee-
Q 023643 193 IK---M-----VFKGHSDYLHCIVARNSTNQIVTGSED----GTARIWD----CKSGKCIKVIDPVKDKQLKGVISCVS- 255 (279)
Q Consensus 193 ~~---~-----~~~~~~~~i~~i~~~~~~~~l~~~~~d----~~i~vwd----~~~~~~~~~~~~~~~~~~~~~~~~v~- 255 (279)
.+ . .+.+|...+..++|+||++++++.... ..|.+|| +.+++....+... ...|...+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~----~~~~~~~~~~ 311 (719)
T 1z68_A 236 YVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHI----EESRTGWAGG 311 (719)
T ss_dssp HHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEE----EECSSSCSSS
T ss_pred ccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecc----cccCCceEcc
Confidence 53 1 234578889999999998877764322 3488899 7777654433100 013445555
Q ss_pred ----EEEEcCCCCEEEE--EcCcce--EEeC
Q 023643 256 ----CITLDASESWLVR--VRATNY--VILF 278 (279)
Q Consensus 256 ----~~~~~~~~~~l~~--~~~d~~--i~~w 278 (279)
.++|+|||+.|+. +..+|. |.+|
T Consensus 312 ~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~ 342 (719)
T 1z68_A 312 FFVSTPVFSYDAISYYKIFSDKDGYKHIHYI 342 (719)
T ss_dssp SSCCCCEECTTSSCEEEEEECTTSCEEEEEE
T ss_pred ccCCccEECCCCCeEEEEEEccCCceEEEEE
Confidence 7899999996554 445554 4444
No 158
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.84 E-value=3.7e-19 Score=138.43 Aligned_cols=157 Identities=9% Similarity=0.056 Sum_probs=113.4
Q ss_pred CEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccC-Ccc-CeEEEEecCCCCceEEEEeeCCCcEEEe
Q 023643 42 DTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHG-HDG-PAYDVKFYGGNEDALLLSCGDDGRICGW 119 (279)
Q Consensus 42 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~-~v~~~~~~~~~~~~~l~s~~~dg~i~iw 119 (279)
++|++++.++.|.+||+.+ ++.+..+.. +.. .+..++|+|+++ .++++++.++.|.+|
T Consensus 2 ~~~v~~~~~~~v~~~d~~~-------------------~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~v~~~~~~~v~~~ 61 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEK-------------------MAVDKVITIADAGPTPMVPMVAPGGR-IAYATVNKSESLVKI 61 (337)
T ss_dssp EEEEEEETTTEEEEEETTT-------------------TEEEEEEECTTCTTCCCCEEECTTSS-EEEEEETTTTEEEEE
T ss_pred cEEEEcCCCCeEEEEECCC-------------------CcEEEEEEcCCCCCCccceEEcCCCC-EEEEEeCCCCeEEEE
Confidence 4789999999999999987 344444432 221 477899999997 245666778999999
Q ss_pred ecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec------------CCCeEEEEe
Q 023643 120 RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA------------GDSCAYCWD 187 (279)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------------~d~~i~i~d 187 (279)
|+.+.. ....+........ ...+..++|+|++++++++. .++.|.+||
T Consensus 62 d~~~~~---~~~~~~~~~~~~~-----------------~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d 121 (337)
T 1pby_B 62 DLVTGE---TLGRIDLSTPEER-----------------VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121 (337)
T ss_dssp ETTTCC---EEEEEECCBTTEE-----------------EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEE
T ss_pred ECCCCC---eEeeEEcCCcccc-----------------cccccceEECCCCCEEEEEecccccccccccccCceEEEEE
Confidence 986532 1111111000000 00256899999999888885 579999999
Q ss_pred cCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 188 VESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 188 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
+.+++.+..+.. ...+.+++|+|++++|+++ ++.|.+||+.+++....+..
T Consensus 122 ~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~ 172 (337)
T 1pby_B 122 AETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPI 172 (337)
T ss_dssp TTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECS
T ss_pred CCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeec
Confidence 999988887764 4567889999999988887 68899999999888766653
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=2.6e-20 Score=159.39 Aligned_cols=195 Identities=10% Similarity=0.044 Sum_probs=136.0
Q ss_pred EEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCcc---CeEEEEecCCCCceE
Q 023643 30 RTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDG---PAYDVKFYGGNEDAL 106 (279)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~ 106 (279)
.++|+| ++.++++ +.|++|++||+.++ +....+..|.. .+.+++|+|+++ +
T Consensus 20 ~~~~s~----dg~~~~~-~~d~~i~~~~~~~g-------------------~~~~~~~~~~~~~~~~~~~~~SpDg~--~ 73 (719)
T 1z68_A 20 FPNWIS----GQEYLHQ-SADNNIVLYNIETG-------------------QSYTILSNRTMKSVNASNYGLSPDRQ--F 73 (719)
T ss_dssp CCEESS----SSEEEEE-CTTSCEEEEESSSC-------------------CEEEEECHHHHHTTTCSEEEECTTSS--E
T ss_pred ccEECC----CCeEEEE-cCCCCEEEEEcCCC-------------------cEEEEEccccccccceeeEEECCCCC--e
Confidence 679999 8865554 56999999999983 33333433333 488999999998 8
Q ss_pred EEEeeC---------CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe
Q 023643 107 LLSCGD---------DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA 177 (279)
Q Consensus 107 l~s~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 177 (279)
|++++. ++.|++||+.+..... ...+. ..+..++|+|||+.|+.+
T Consensus 74 la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~-~~~l~-------------------------~~~~~~~~SPDG~~la~~ 127 (719)
T 1z68_A 74 VYLESDYSKLWRYSYTATYYIYDLSNGEFVR-GNELP-------------------------RPIQYLCWSPVGSKLAYV 127 (719)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCC-------------------------SSBCCEEECSSTTCEEEE
T ss_pred EEEEecCceeEEeecceEEEEEECCCCcccc-ceecC-------------------------cccccceECCCCCEEEEE
Confidence 888876 7899999987542200 00010 026789999999999988
Q ss_pred cCCCeEEEEecCCCcEEEEe-ecCCcce-----------------EEEEEcCCCcEEEEecCCC----------------
Q 023643 178 AGDSCAYCWDVESSRIKMVF-KGHSDYL-----------------HCIVARNSTNQIVTGSEDG---------------- 223 (279)
Q Consensus 178 ~~d~~i~i~d~~~~~~~~~~-~~~~~~i-----------------~~i~~~~~~~~l~~~~~d~---------------- 223 (279)
. ++.|++||+.+++..+.. .++...+ .+++|+|||++|++++.|.
T Consensus 128 ~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~ 206 (719)
T 1z68_A 128 Y-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQY 206 (719)
T ss_dssp E-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSS
T ss_pred E-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCC
Confidence 6 789999999988765533 2232222 4899999999999987652
Q ss_pred ------------------eEEEEeCCCCceE--EEecCCccccccCcceeeeEEEEcCCCCEEEEEcC--c--ceEEeCC
Q 023643 224 ------------------TARIWDCKSGKCI--KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA--T--NYVILFS 279 (279)
Q Consensus 224 ------------------~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d--~~i~~wd 279 (279)
.|++||+.+++.. ..+.. ...+.+|...+..++|+||++++++... + ..|.+||
T Consensus 207 ~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d 284 (719)
T 1z68_A 207 PRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPV--PAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD 284 (719)
T ss_dssp CEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCC--CHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred ccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccC--CccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence 7889999887653 12211 1112467888999999999887777432 2 2366554
No 160
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.84 E-value=6.3e-18 Score=131.30 Aligned_cols=231 Identities=14% Similarity=0.069 Sum_probs=159.4
Q ss_pred CCceeeeccccccccceeeee-ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 2 CGDSTNWDEDAYRKSILKERE-ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
+|.|.+||.++.+. +.... .+......++++| +++++++...++.|++|+......
T Consensus 68 ~~~i~~~d~~~g~~--~~~~~~~~~~~p~gia~d~----~g~l~v~d~~~~~v~~~~~~g~~~----------------- 124 (329)
T 3fvz_A 68 EDTILVIDPNNAEI--LQSSGKNLFYLPHGLSIDT----DGNYWVTDVALHQVFKLDPHSKEG----------------- 124 (329)
T ss_dssp SCCEEEECTTTCCE--EEEECTTTCSSEEEEEECT----TSCEEEEETTTTEEEEECTTCSSC-----------------
T ss_pred CCcEEEEECCCCeE--EeccCCCccCCceEEEECC----CCCEEEEECCCCEEEEEeCCCCeE-----------------
Confidence 36789999876542 33322 3445788999999 899999999999999999875310
Q ss_pred cccccc---------cCCccCeEEEEecC-CCCceEEEEee-CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCC
Q 023643 81 EPDGFL---------HGHDGPAYDVKFYG-GNEDALLLSCG-DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQH 149 (279)
Q Consensus 81 ~~~~~~---------~~h~~~v~~~~~~~-~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (279)
.+..+ .++......++++| ++. ++++.+ .++.|++|+.+ . .....+......
T Consensus 125 -~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv~d~~~~~~I~~~~~~-g---~~~~~~~~~g~~---------- 187 (329)
T 3fvz_A 125 -PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFVSDGYCNSRIVQFSPS-G---KFVTQWGEESSG---------- 187 (329)
T ss_dssp -CSEEESBTTBCCCSTTCCSSEEEEEECTTTCC--EEEEECSSCCEEEEECTT-S---CEEEEECEECCS----------
T ss_pred -EEEEecccCCCCCCccccCCCcEEEEeCCCCe--EEEEeCCCCCeEEEEcCC-C---CEEEEeccCCCC----------
Confidence 11111 23445688999999 676 777776 69999999943 1 111111100000
Q ss_pred CCccccCCCCCCceeEEEcCC-CCeEEEecCCCeEEEEecCCCcEEEEee--cCCcceEEEEEcC------CCcEEEEec
Q 023643 150 KGPWGALSPVPENNAIAVDPQ-GGAIFSAAGDSCAYCWDVESSRIKMVFK--GHSDYLHCIVARN------STNQIVTGS 220 (279)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~------~~~~l~~~~ 220 (279)
.-...........++++|+ +.++++...++.|++||..+++.+..+. .+...+..++++| +++.+++..
T Consensus 188 --~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~ 265 (329)
T 3fvz_A 188 --SSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQ 265 (329)
T ss_dssp --SSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCS
T ss_pred --CCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccC
Confidence 0000000112579999998 6677777788999999999899888874 3556788999999 333333334
Q ss_pred CCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 221 EDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 221 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.+..|++||+.+++.+..+... .++.....+++++|+|.++++...++.|++|+
T Consensus 266 ~~~~v~~~~~~~g~~~~~~~~~-----~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 266 EPVQGFVMNFSSGEIIDVFKPV-----RKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp CCCCEEEEETTTCCEEEEECCS-----SSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred CCcEEEEEEcCCCeEEEEEcCC-----CCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence 4568999999999999887422 24556789999999998888989999999885
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.83 E-value=4.1e-19 Score=140.00 Aligned_cols=228 Identities=9% Similarity=0.050 Sum_probs=141.3
Q ss_pred ceeeeccc-cccccceeeeeecccceEEEEECCCCCCCCCE--EEEec-------------CCCcEEEEeCCCCCccccc
Q 023643 4 DSTNWDED-AYRKSILKEREILTRTVFRTVWGPSKDGSPDT--IVIAS-------------SDGSITSYSIPSCISKLPL 67 (279)
Q Consensus 4 ~v~iw~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--l~~~~-------------~dg~i~iw~~~~~~~~~~~ 67 (279)
.|++|+++ ..+...+.....+ +....++|+| ++++ ++++. .+|++.+|++......
T Consensus 61 ~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~sp----dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~--- 132 (365)
T 1jof_A 61 KWSSFAVKSPTEIVHEASHPIG-GHPRANDADT----NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKL--- 132 (365)
T ss_dssp EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTS----CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCE---
T ss_pred eEEEEEECCCCCEEEeeEeecC-CCCccEEECC----CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcC---
Confidence 58899976 4332111111111 2355688999 8884 55554 6899999999742100
Q ss_pred ccCCcccceeeecccccccc-CCccCeEEEEecCCCCceEEEEee-CCCcEEEeecC-CCccCcceeeeccCcccceEEe
Q 023643 68 GLSNSKVQQLLGIEPDGFLH-GHDGPAYDVKFYGGNEDALLLSCG-DDGRICGWRWK-EFTESKVPINLQGNHVKPVLDL 144 (279)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~ 144 (279)
...+..+. .+...+.+++|+|+++ +|+++. .++.|++|+++ +... .......
T Consensus 133 ------------~~~~~~~~~~~~~~~~~~~~spdG~--~l~~~~~~~~~v~~~~~~~~g~~-~~~~~~~---------- 187 (365)
T 1jof_A 133 ------------EKNVQNYEYQENTGIHGMVFDPTET--YLYSADLTANKLWTHRKLASGEV-ELVGSVD---------- 187 (365)
T ss_dssp ------------EEEEEEEECCTTCCEEEEEECTTSS--EEEEEETTTTEEEEEEECTTSCE-EEEEEEE----------
T ss_pred ------------cceEeeEEeCCCCcceEEEECCCCC--EEEEEcCCCCEEEEEEECCCCCE-EEeeeEe----------
Confidence 00111111 2456789999999998 777665 46899999986 2211 0001110
Q ss_pred ecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC-CCeEEEEecC--CCcEEE---Eee-------cCCc------ceE
Q 023643 145 VNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG-DSCAYCWDVE--SSRIKM---VFK-------GHSD------YLH 205 (279)
Q Consensus 145 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~--~~~~~~---~~~-------~~~~------~i~ 205 (279)
... +...+..++|+|+++++++++. ++.|.+|+++ +++... .+. +|.. .+.
T Consensus 188 -~~~---------~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 257 (365)
T 1jof_A 188 -APD---------PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRA 257 (365)
T ss_dssp -CSS---------TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEE
T ss_pred -cCC---------CCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccc
Confidence 000 0012578999999998887764 6899999765 455431 222 1222 588
Q ss_pred EEE-EcCCCcEEEEecCCC------eEEEEeCC-CCceEEEecCCccccccCcceeeeEEEEcC---CCCEEEEEcCc-c
Q 023643 206 CIV-ARNSTNQIVTGSEDG------TARIWDCK-SGKCIKVIDPVKDKQLKGVISCVSCITLDA---SESWLVRVRAT-N 273 (279)
Q Consensus 206 ~i~-~~~~~~~l~~~~~d~------~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d-~ 273 (279)
.++ |+|+|++|++++.+. .|.+|++. +++....... ...+......++|+| +|++|++++.+ +
T Consensus 258 ~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~-----~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~ 332 (365)
T 1jof_A 258 DVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL-----SPTPTSGGHSNAVSPCPWSDEWMAITDDQEG 332 (365)
T ss_dssp EEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE-----EECSSCCTTCCCEEECTTCTTEEEEECSSSC
T ss_pred cEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeee-----eecCCCCcccceecCCCcCCCEEEEEEcCCC
Confidence 999 999999887765432 89999996 5665432100 022333456789999 89999999864 8
Q ss_pred eEEeCC
Q 023643 274 YVILFS 279 (279)
Q Consensus 274 ~i~~wd 279 (279)
.|.+|+
T Consensus 333 ~v~v~~ 338 (365)
T 1jof_A 333 WLEIYR 338 (365)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 999985
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.82 E-value=2.4e-18 Score=135.59 Aligned_cols=229 Identities=13% Similarity=0.057 Sum_probs=142.1
Q ss_pred Cceeeeccc--cccccceeeee-ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCC-CCCcccccccCCcccceee
Q 023643 3 GDSTNWDED--AYRKSILKERE-ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIP-SCISKLPLGLSNSKVQQLL 78 (279)
Q Consensus 3 G~v~iw~~~--~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~ 78 (279)
+.|.+|+++ +.....+.... .....+..++|+| ++++|++++.+ .|.+|++. ++
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~sp----dg~~l~~~~~~-~v~~~~~~~~g----------------- 71 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDH----ERKNIYGAAMK-KWSSFAVKSPT----------------- 71 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECT----TSSEEEEEEBT-EEEEEEEEETT-----------------
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECC----CCCEEEEEccc-eEEEEEECCCC-----------------
Confidence 356666643 33322222221 2334688999999 89999888887 99999987 42
Q ss_pred eccccccc--cCCccCeEEEEecCCCCceE--EEEee-------------CCCcEEEeecCCCccCcceeeeccCcccce
Q 023643 79 GIEPDGFL--HGHDGPAYDVKFYGGNEDAL--LLSCG-------------DDGRICGWRWKEFTESKVPINLQGNHVKPV 141 (279)
Q Consensus 79 ~~~~~~~~--~~h~~~v~~~~~~~~~~~~~--l~s~~-------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 141 (279)
+..... ..+ +.+..++|+|+++ + +++++ .+|.+.+|+++... .......
T Consensus 72 --~~~~~~~~~~~-g~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g--~~~~~~~------- 137 (365)
T 1jof_A 72 --EIVHEASHPIG-GHPRANDADTNTR--AIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETG--KLEKNVQ------- 137 (365)
T ss_dssp --EEEEEEEEECC-SSGGGGCTTSCCE--EEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTC--CEEEEEE-------
T ss_pred --CEEEeeEeecC-CCCccEEECCCCC--EEEEEEecCCcceeccceeecCCceEEEEccCCCC--cCcceEe-------
Confidence 111111 111 1244588999986 4 44553 68999999986321 1110000
Q ss_pred EEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec-CCCeEEEEecC-CCcEE--EEee--cCCcceEEEEEcCCCcE
Q 023643 142 LDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA-GDSCAYCWDVE-SSRIK--MVFK--GHSDYLHCIVARNSTNQ 215 (279)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~-~~~~~--~~~~--~~~~~i~~i~~~~~~~~ 215 (279)
.+. .. ....+.+++|+|++++++++. .++.|++||+. +++.. ..+. .|...+..++|+|+|++
T Consensus 138 -~~~-~~---------~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~ 206 (365)
T 1jof_A 138 -NYE-YQ---------ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNY 206 (365)
T ss_dssp -EEE-CC---------TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSE
T ss_pred -eEE-eC---------CCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCE
Confidence 000 00 011368999999999888765 46899999998 67653 3343 23567899999999998
Q ss_pred EEEec-CCCeEEEEeCC--CCceEE---EecCCccccccCcce------eeeEEE-EcCCCCEEEEEcCcc------eEE
Q 023643 216 IVTGS-EDGTARIWDCK--SGKCIK---VIDPVKDKQLKGVIS------CVSCIT-LDASESWLVRVRATN------YVI 276 (279)
Q Consensus 216 l~~~~-~d~~i~vwd~~--~~~~~~---~~~~~~~~~~~~~~~------~v~~~~-~~~~~~~l~~~~~d~------~i~ 276 (279)
+++++ .++.|.+|++. +++... .+.... ..+.+|.. .+..++ |+|||++|++++.+. .|.
T Consensus 207 l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~ 285 (365)
T 1jof_A 207 LYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP-PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIA 285 (365)
T ss_dssp EEEEETTTTEEEEEEECTTTCCEEEEEEEEESSC-TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEE
T ss_pred EEEEECCCCeEEEEEEeCCCCcEEEccceEEcCC-CCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEE
Confidence 87766 47899999765 565432 221110 00112232 578999 999999988775432 788
Q ss_pred eCC
Q 023643 277 LFS 279 (279)
Q Consensus 277 ~wd 279 (279)
+|+
T Consensus 286 v~~ 288 (365)
T 1jof_A 286 GFK 288 (365)
T ss_dssp EEE
T ss_pred EEE
Confidence 884
No 163
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.81 E-value=2.3e-17 Score=125.61 Aligned_cols=216 Identities=11% Similarity=0.063 Sum_probs=150.4
Q ss_pred CCceeeeccccccccceeeee------ecccceEEEEE-CCCCCCCCCEEEEecC-CCcEEEEeCCCCCcccccccCCcc
Q 023643 2 CGDSTNWDEDAYRKSILKERE------ILTRTVFRTVW-GPSKDGSPDTIVIASS-DGSITSYSIPSCISKLPLGLSNSK 73 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~------~~~~~v~~~~~-~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~ 73 (279)
++.|++||.++.. +..+. .+...+..+++ .+ ++.++++... ++.|.+|+...
T Consensus 50 ~~~i~~~d~~g~~---~~~~~~~~~~~~~~~~p~~i~~~~~----~g~l~v~~~~~~~~i~~~d~~g------------- 109 (286)
T 1q7f_A 50 NHRIQIFDKEGRF---KFQFGECGKRDSQLLYPNRVAVVRN----SGDIIVTERSPTHQIQIYNQYG------------- 109 (286)
T ss_dssp GTEEEEECTTSCE---EEEECCBSSSTTCBSSEEEEEEETT----TTEEEEEECGGGCEEEEECTTS-------------
T ss_pred CCEEEEECCCCcE---EEEecccCCCcccccCceEEEEEcC----CCeEEEEcCCCCCEEEEECCCC-------------
Confidence 4678899877532 22222 23457889999 46 6777777643 78999999442
Q ss_pred cceeeecccccccc-CCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCc
Q 023643 74 VQQLLGIEPDGFLH-GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGP 152 (279)
Q Consensus 74 ~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (279)
+.+..+. .+...+.++++.|++. ++++...++.|.+|+.+. .....+... .
T Consensus 110 -------~~~~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g----~~~~~~~~~-----------~---- 161 (286)
T 1q7f_A 110 -------QFVRKFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQNG----NVLHKFGCS-----------K---- 161 (286)
T ss_dssp -------CEEEEECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECTTS----CEEEEEECT-----------T----
T ss_pred -------cEEEEecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcCCC----CEEEEeCCC-----------C----
Confidence 2222222 2345688999999987 888888889999999532 111111100 0
Q ss_pred cccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecC--CcceEEEEEcCCCcEEEEecCCC-eEEEEe
Q 023643 153 WGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGH--SDYLHCIVARNSTNQIVTGSEDG-TARIWD 229 (279)
Q Consensus 153 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d~-~i~vwd 229 (279)
....+..++++|+++++++...++.|++||.. ++.+..+..+ ...+..++++++|+++++...++ .|.+||
T Consensus 162 -----~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~ 235 (286)
T 1q7f_A 162 -----HLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT 235 (286)
T ss_dssp -----TCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred -----ccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEEC
Confidence 00125899999999877777778999999974 6666666543 36789999999999999888886 999999
Q ss_pred CCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 230 CKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
. +++.+..+... .....+.+++++|+|+++++ +.|+.|++|+
T Consensus 236 ~-~g~~~~~~~~~------~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 236 Q-DGQLISALESK------VKHAQCFDVALMDDGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp T-TSCEEEEEEES------SCCSCEEEEEEETTTEEEEE-ETTTEEEEEE
T ss_pred C-CCCEEEEEccc------CCCCcceeEEECCCCcEEEE-CCCCeEEEEE
Confidence 5 57777666321 12234678999999987777 5689999985
No 164
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.81 E-value=1.9e-18 Score=135.12 Aligned_cols=164 Identities=10% Similarity=0.060 Sum_probs=112.7
Q ss_pred EEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCc-cCeEEEEecCCCCceEEEE
Q 023643 31 TVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHD-GPAYDVKFYGGNEDALLLS 109 (279)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s 109 (279)
+++++ ++.++++++.+++|++||+.+ ++.+..+..+. ..+..++|+|+++ ..+++
T Consensus 5 ~~~~~----~~~~~v~~~~~~~v~~~d~~~-------------------~~~~~~~~~~~~~~~~~~~~s~dg~-~~~v~ 60 (349)
T 1jmx_B 5 PALKA----GHEYMIVTNYPNNLHVVDVAS-------------------DTVYKSCVMPDKFGPGTAMMAPDNR-TAYVL 60 (349)
T ss_dssp CCCCT----TCEEEEEEETTTEEEEEETTT-------------------TEEEEEEECSSCCSSCEEEECTTSS-EEEEE
T ss_pred ccccC----CCEEEEEeCCCCeEEEEECCC-------------------CcEEEEEecCCCCCCceeEECCCCC-EEEEE
Confidence 45666 788999999999999999987 34444444332 2467899999997 24456
Q ss_pred eeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCC---------
Q 023643 110 CGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD--------- 180 (279)
Q Consensus 110 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------- 180 (279)
...++.|.+||+.+.. .............. ...+..++|+|+++++++++.+
T Consensus 61 ~~~~~~i~~~d~~t~~---~~~~~~~~~~~~~~----------------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 121 (349)
T 1jmx_B 61 NNHYGDIYGIDLDTCK---NTFHANLSSVPGEV----------------GRSMYSFAISPDGKEVYATVNPTQRLNDHYV 121 (349)
T ss_dssp ETTTTEEEEEETTTTE---EEEEEESCCSTTEE----------------EECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred eCCCCcEEEEeCCCCc---EEEEEEcccccccc----------------cccccceEECCCCCEEEEEcccccccccccc
Confidence 6678999999986532 11111111000000 0025789999999999988865
Q ss_pred ---CeEEEEecCCCcE---EEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 181 ---SCAYCWDVESSRI---KMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 181 ---~~i~i~d~~~~~~---~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
+.|.+||+.+++. +..+. +...+.+++|+|+++ +++++. .|.+||+.+++.+..+..
T Consensus 122 ~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~ 184 (349)
T 1jmx_B 122 VKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPL 184 (349)
T ss_dssp ECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECS
T ss_pred cCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccc
Confidence 8999999988543 33444 334688999999999 555543 499999999988877653
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.80 E-value=8.1e-19 Score=150.52 Aligned_cols=236 Identities=10% Similarity=0.023 Sum_probs=146.8
Q ss_pred CCceeeeccccccccceeeeeeccc-----ceEEEEECCCCCCCCCEEEEecCC---------CcEEEEeCCCCCccccc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTR-----TVFRTVWGPSKDGSPDTIVIASSD---------GSITSYSIPSCISKLPL 67 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~l~~~~~d---------g~i~iw~~~~~~~~~~~ 67 (279)
||.|++||++++.. ...+..|.. ....++||| |+++|+.++.+ +.+.+||+.++
T Consensus 35 ~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Sp----dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~------ 102 (740)
T 4a5s_A 35 ENNILVFNAEYGNS--SVFLENSTFDEFGHSINDYSISP----DGQFILLEYNYVKQWRHSYTASYDIYDLNKR------ 102 (740)
T ss_dssp TTEEEEEETTTCCE--EEEECTTTTTTCCSCCCEEEECT----TSSEEEEEEEEEECSSSCEEEEEEEEETTTT------
T ss_pred CCcEEEEECCCCce--EEEEechhhhhhcccccceEECC----CCCEEEEEECCeeeEEEccceEEEEEECCCC------
Confidence 68999999988753 333444432 234478999 99999998876 56679999983
Q ss_pred ccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecC
Q 023643 68 GLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNH 147 (279)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (279)
+. ..+..|.+.+...+|+|+++ .|+.++ |+.|++|++...... .....+.. ..+..
T Consensus 103 -------------~~-~~l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~--~lt~~g~~-~~~~~---- 158 (740)
T 4a5s_A 103 -------------QL-ITEERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSY--RITWTGKE-DIIYN---- 158 (740)
T ss_dssp -------------EE-CCSSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCE--ECCSCCBT-TTEEE----
T ss_pred -------------cE-EEcccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceE--EEcCCCCc-cceec----
Confidence 32 23556777899999999998 888774 689999998653211 11111111 10100
Q ss_pred CCCCccc-cCCCCCCceeEEEcCCCCeEEEecCC------------------------------------CeEEEEecCC
Q 023643 148 QHKGPWG-ALSPVPENNAIAVDPQGGAIFSAAGD------------------------------------SCAYCWDVES 190 (279)
Q Consensus 148 ~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d------------------------------------~~i~i~d~~~ 190 (279)
... .|- ...-......+.|+|||+.|+.++.| ..|++||+.+
T Consensus 159 g~~-~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~ 237 (740)
T 4a5s_A 159 GIT-DWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDS 237 (740)
T ss_dssp SBC-CHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTS
T ss_pred Ccc-cccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCC
Confidence 000 000 00000113568999999988876421 1588999988
Q ss_pred ---Cc--EEEEee------cCCcceEEEEEcCCCcEEEEec----CCCeEEEEeCCCCc----eEEEecCCccccccCcc
Q 023643 191 ---SR--IKMVFK------GHSDYLHCIVARNSTNQIVTGS----EDGTARIWDCKSGK----CIKVIDPVKDKQLKGVI 251 (279)
Q Consensus 191 ---~~--~~~~~~------~~~~~i~~i~~~~~~~~l~~~~----~d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~ 251 (279)
++ ....+. +|...+..++|+|+|+.++... .+..|.+||+.+++ +........ ..|.
T Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~----~~~~ 313 (740)
T 4a5s_A 238 LSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIE----MSTT 313 (740)
T ss_dssp CCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEE----ECSS
T ss_pred CCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeee----ccCC
Confidence 73 222333 3778899999999999766543 34479999999887 221110000 2344
Q ss_pred eeee-----EEEEcCCCCEEE-EEc-Ccc--eEEeC
Q 023643 252 SCVS-----CITLDASESWLV-RVR-ATN--YVILF 278 (279)
Q Consensus 252 ~~v~-----~~~~~~~~~~l~-~~~-~d~--~i~~w 278 (279)
..|. .++|+|||+.|+ ..+ .+| .|.+|
T Consensus 314 ~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~ 349 (740)
T 4a5s_A 314 GWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYF 349 (740)
T ss_dssp SCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEE
T ss_pred ceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEE
Confidence 4443 688999999877 554 344 44444
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.79 E-value=1.9e-17 Score=130.09 Aligned_cols=223 Identities=8% Similarity=0.012 Sum_probs=144.4
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEec----------CCCcEEEEeCCCCCcccccccCC
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS----------SDGSITSYSIPSCISKLPLGLSN 71 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~ 71 (279)
|+.|.+||.++.+ .+..+..+..+ .++|+| ++++++++. .++.|.+||..+.+
T Consensus 30 d~~v~v~D~~t~~--~~~~i~~g~~p--~i~~sp----dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~--------- 92 (361)
T 2oiz_A 30 ESRVHVYDYTNGK--FLGMVPTAFNG--HVQVSN----DGKKIYTMTTYHERITRGKRSDVVEVWDADKLT--------- 92 (361)
T ss_dssp GCEEEEEETTTCC--EEEEEECCEEE--EEEECT----TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC---------
T ss_pred cCeEEEEECCCCe--EEEEecCCCCC--ceEECC----CCCEEEEEEecccccccCCCCCEEEEEECcCCc---------
Confidence 6789999987764 34555555555 899999 999998876 36789999998732
Q ss_pred cccceeeeccccccccC------CccCeEEEEecCCCCceEEEEeeC--CCcEEEeecCCCccCcc-eee--------ec
Q 023643 72 SKVQQLLGIEPDGFLHG------HDGPAYDVKFYGGNEDALLLSCGD--DGRICGWRWKEFTESKV-PIN--------LQ 134 (279)
Q Consensus 72 ~~~~~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~~~l~s~~~--dg~i~iw~~~~~~~~~~-~~~--------~~ 134 (279)
.+..+.. +......++++|+++ +|+++.. +++|.+||+.+.+.... +.. ..
T Consensus 93 ----------~~~~i~~~~~~~~~g~~p~~i~~spdg~--~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p 160 (361)
T 2oiz_A 93 ----------FEKEISLPPKRVQGLNYDGLFRQTTDGK--FIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQP 160 (361)
T ss_dssp ----------EEEEEEECTTBCCBCCCGGGEEECTTSS--EEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECT
T ss_pred ----------EEEEEEcCccccccCCCcceEEECCCCC--EEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcC
Confidence 2222221 223456788999988 7776653 57899999865422111 000 00
Q ss_pred -c---------CcccceEEeecCCC--------------CCc-----------------------cccCCC---------
Q 023643 135 -G---------NHVKPVLDLVNHQH--------------KGP-----------------------WGALSP--------- 158 (279)
Q Consensus 135 -~---------~~~~~~~~~~~~~~--------------~~~-----------------------~~~~~~--------- 158 (279)
+ ........+..... ..+ ++....
T Consensus 161 ~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~ 240 (361)
T 2oiz_A 161 NRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWS 240 (361)
T ss_dssp TSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEE
T ss_pred CCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceeccccc
Confidence 0 00000000000000 000 000000
Q ss_pred ------------CCCceeEEEcCCCCeEEEecC-----------CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcE
Q 023643 159 ------------VPENNAIAVDPQGGAIFSAAG-----------DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ 215 (279)
Q Consensus 159 ------------~~~i~~~~~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 215 (279)
......++|+|+++.++++.. .+.|.+||+.+++.+..+..+. +.+++|+|+|++
T Consensus 241 ~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~ 318 (361)
T 2oiz_A 241 LLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNL 318 (361)
T ss_dssp SCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTE
T ss_pred ccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCE
Confidence 001112789999888877643 3589999999999999998776 899999999999
Q ss_pred EEEecCCCeEEEEeCCCC--ceEEEecCCccccccCcceeeeEEEEcCCCC
Q 023643 216 IVTGSEDGTARIWDCKSG--KCIKVIDPVKDKQLKGVISCVSCITLDASES 264 (279)
Q Consensus 216 l~~~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 264 (279)
|++++. +.|.+||..++ +.+..+ ..+......++++|+|.
T Consensus 319 l~v~n~-~~v~v~D~~t~~l~~~~~i--------~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 319 MLTLDG-GNVNVYDISQPEPKLLRTI--------EGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEECS-SCEEEEECSSSSCEEEEEE--------TTSCSSEEEEEECCCSC
T ss_pred EEEeCC-CeEEEEECCCCcceeeEEe--------ccCCCCcEEEEecCCCC
Confidence 998887 99999999999 988887 33444567889999985
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.79 E-value=9.6e-18 Score=142.27 Aligned_cols=226 Identities=11% Similarity=-0.012 Sum_probs=144.7
Q ss_pred CCceeeeccccccccceeeeeecccceE---------EEEEC--CCCCCCCCE-EEEecC-CCcEEEEeCC--C-CCccc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVF---------RTVWG--PSKDGSPDT-IVIASS-DGSITSYSIP--S-CISKL 65 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~~~~~-l~~~~~-dg~i~iw~~~--~-~~~~~ 65 (279)
+|..+||..... ...+.+..|...+. ...|+ | |++. |+.++. +..|.++++. . +.
T Consensus 46 ~~~~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SP----Dg~~~la~~~~~~~~l~~~~~~~~g~~~--- 116 (662)
T 3azo_A 46 AGRATLVRRRAD--GAEESALPAPWNVRNRVFEYSGFPWAGVPRP----AGGPLLVFTHFGDQRLYAFEPDAPGGAV--- 116 (662)
T ss_dssp TTEEEEEEECTT--SCEEESSCTTCCBCCCGGGTCCCCEEEECCS----SSSCEEEEEBTTTCCEEEECTTSTTCCC---
T ss_pred CCcEEEEEECCC--CCcceeCCCCccccccccccCCccceeeeec----CCCeEEEEEECCCCeEEEEcCCCCCCCC---
Confidence 566788874222 12334445555555 55565 8 8887 766543 5667777765 1 21
Q ss_pred ccccCCcccceeeeccccccccC-----CccCeEEEEecCCCCceEEEEeeCC----------CcEEEeecCCCccC--c
Q 023643 66 PLGLSNSKVQQLLGIEPDGFLHG-----HDGPAYDVKFYGGNEDALLLSCGDD----------GRICGWRWKEFTES--K 128 (279)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~~~d----------g~i~iw~~~~~~~~--~ 128 (279)
...+.. |...+..++|+|+++ .|++++.| ..|++||+...... .
T Consensus 117 -----------------~~~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 177 (662)
T 3azo_A 117 -----------------PRPLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS 177 (662)
T ss_dssp -----------------CEECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred -----------------CEeccCCccCCCCccccCcEECCCCC--EEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence 122222 667789999999998 88888876 57999998641000 0
Q ss_pred ceeeec-cCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCC--------CeEEEEecC-CC---cEEE
Q 023643 129 VPINLQ-GNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD--------SCAYCWDVE-SS---RIKM 195 (279)
Q Consensus 129 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------~~i~i~d~~-~~---~~~~ 195 (279)
....+. .+. ..+..++|+|||++|+.++.+ ..|++||+. ++ +...
T Consensus 178 ~~~~l~~~~~----------------------~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~ 235 (662)
T 3azo_A 178 AVRELSDDAH----------------------RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRT 235 (662)
T ss_dssp GSEESSCSCS----------------------SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEE
T ss_pred ceeEEEecCC----------------------CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEE
Confidence 111111 111 025678999999999877644 479999998 56 4444
Q ss_pred EeecCCcceEEEEEcCCCcEEEEecCCC--eEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcc
Q 023643 196 VFKGHSDYLHCIVARNSTNQIVTGSEDG--TARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATN 273 (279)
Q Consensus 196 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 273 (279)
....+...+..++|+|+|+++++++.++ .|.+||+.+++.......+.......-...+..++|+|+++++++++. +
T Consensus 236 l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~ 314 (662)
T 3azo_A 236 LLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G 314 (662)
T ss_dssp EEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S
T ss_pred eCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-C
Confidence 4555678899999999999888888888 677777767765544321110000000001467899999999999988 8
Q ss_pred eEEeC
Q 023643 274 YVILF 278 (279)
Q Consensus 274 ~i~~w 278 (279)
.+++|
T Consensus 315 ~~~l~ 319 (662)
T 3azo_A 315 AAVLG 319 (662)
T ss_dssp SCEEE
T ss_pred ccEEE
Confidence 88887
No 168
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.78 E-value=3.6e-18 Score=146.50 Aligned_cols=197 Identities=8% Similarity=-0.005 Sum_probs=133.3
Q ss_pred ceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCcc-----CeEEEEecCC
Q 023643 27 TVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDG-----PAYDVKFYGG 101 (279)
Q Consensus 27 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~ 101 (279)
....+.|+| ++.+++++ ||+|++||+.++. ....+.+|.. ....+.|+|+
T Consensus 18 ~~~~~~w~~----dg~~~~~~--~~~i~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~Spd 72 (740)
T 4a5s_A 18 KLYSLRWIS----DHEYLYKQ--ENNILVFNAEYGN-------------------SSVFLENSTFDEFGHSINDYSISPD 72 (740)
T ss_dssp CCCCEEECS----SSEEEEEE--TTEEEEEETTTCC-------------------EEEEECTTTTTTCCSCCCEEEECTT
T ss_pred cccccEECC----CCcEEEEc--CCcEEEEECCCCc-------------------eEEEEechhhhhhcccccceEECCC
Confidence 466899999 89888886 8999999999843 2333344432 2345889999
Q ss_pred CCceEEEEeeCC---------CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCC
Q 023643 102 NEDALLLSCGDD---------GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG 172 (279)
Q Consensus 102 ~~~~~l~s~~~d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 172 (279)
++ +|+.++.+ +.+.+||+.+.... .+..+. ..+...+|||||+
T Consensus 73 g~--~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~----~l~~~~----------------------~~~~~~~~SPdG~ 124 (740)
T 4a5s_A 73 GQ--FILLEYNYVKQWRHSYTASYDIYDLNKRQLI----TEERIP----------------------NNTQWVTWSPVGH 124 (740)
T ss_dssp SS--EEEEEEEEEECSSSCEEEEEEEEETTTTEEC----CSSCCC----------------------TTEEEEEECSSTT
T ss_pred CC--EEEEEECCeeeEEEccceEEEEEECCCCcEE----EcccCC----------------------CcceeeEECCCCC
Confidence 98 88888876 56679998754211 111111 1267899999999
Q ss_pred eEEEecCCCeEEEEecCCCcEEEE-eecCCcce-----------------EEEEEcCCCcEEEEecCCC-----------
Q 023643 173 AIFSAAGDSCAYCWDVESSRIKMV-FKGHSDYL-----------------HCIVARNSTNQIVTGSEDG----------- 223 (279)
Q Consensus 173 ~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~i-----------------~~i~~~~~~~~l~~~~~d~----------- 223 (279)
.|+.+. ++.|++||+.+++..+. ..++...+ ..++|||||++|+.++.|.
T Consensus 125 ~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~ 203 (740)
T 4a5s_A 125 KLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFY 203 (740)
T ss_dssp CEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEEC
T ss_pred EEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEee
Confidence 998885 68999999988876542 22332222 3489999999999875322
Q ss_pred -------------------------eEEEEeCCC---Cc--eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEc---
Q 023643 224 -------------------------TARIWDCKS---GK--CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR--- 270 (279)
Q Consensus 224 -------------------------~i~vwd~~~---~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--- 270 (279)
.|++||+.+ ++ ....+... ..+.+|...+..++|+|||+.++...
T Consensus 204 ~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~wspdg~~~~~~~~r~ 281 (740)
T 4a5s_A 204 SDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP--ASMLIGDHYLCDVTWATQERISLQWLRRI 281 (740)
T ss_dssp CSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC--HHHHTSCEEEEEEEEEETTEEEEEEEESS
T ss_pred cCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC--ccCCCCCeEEEEEEEeCCCeEEEEEeCCC
Confidence 478889887 63 22233211 00124778899999999999766542
Q ss_pred -CcceEEeCC
Q 023643 271 -ATNYVILFS 279 (279)
Q Consensus 271 -~d~~i~~wd 279 (279)
.+..|.+||
T Consensus 282 ~~~~~i~~~d 291 (740)
T 4a5s_A 282 QNYSVMDICD 291 (740)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEEEE
Confidence 334677765
No 169
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.76 E-value=4.1e-16 Score=119.27 Aligned_cols=211 Identities=10% Similarity=0.056 Sum_probs=142.3
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
+|.|..|+.++. ...+..+...+.+++++| +++++++...++.|.+||..++.....
T Consensus 49 ~~~i~~~~~~~~----~~~~~~~~~~~~~l~~~~----dg~l~v~~~~~~~i~~~d~~~g~~~~~--------------- 105 (296)
T 3e5z_A 49 QNRTWAWSDDGQ----LSPEMHPSHHQNGHCLNK----QGHLIACSHGLRRLERQREPGGEWESI--------------- 105 (296)
T ss_dssp GTEEEEEETTSC----EEEEESSCSSEEEEEECT----TCCEEEEETTTTEEEEECSTTCCEEEE---------------
T ss_pred CCEEEEEECCCC----eEEEECCCCCcceeeECC----CCcEEEEecCCCeEEEEcCCCCcEEEE---------------
Confidence 466788887764 334455667899999999 899888887788999999976421100
Q ss_pred ccccccC-CccCeEEEEecCCCCceEEEEeeC-----------------CCcEEEeecCCCccCcceeeeccCcccceEE
Q 023643 82 PDGFLHG-HDGPAYDVKFYGGNEDALLLSCGD-----------------DGRICGWRWKEFTESKVPINLQGNHVKPVLD 143 (279)
Q Consensus 82 ~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 143 (279)
.....+ ....+..+++.|++. ++++.+. .+.|..++.. .. ........
T Consensus 106 -~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~----g~-~~~~~~~~------ 171 (296)
T 3e5z_A 106 -ADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD----GT-LSAPIRDR------ 171 (296)
T ss_dssp -ECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT----SC-EEEEECCC------
T ss_pred -eeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEECCC----CC-EEEeecCC------
Confidence 000111 123467899999997 7776321 2334444422 11 11111100
Q ss_pred eecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecC-CCcE---EEEeecCCcceEEEEEcCCCcEEEEe
Q 023643 144 LVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVE-SSRI---KMVFKGHSDYLHCIVARNSTNQIVTG 219 (279)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~---~~~~~~~~~~i~~i~~~~~~~~l~~~ 219 (279)
.....++|+|+++.+++.+.++.|.+||+. +++. ...+..+...+.+++++++|+++++.
T Consensus 172 ----------------~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~ 235 (296)
T 3e5z_A 172 ----------------VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA 235 (296)
T ss_dssp ----------------SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE
T ss_pred ----------------CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc
Confidence 124789999999988777888999999997 4554 33443355667889999999977766
Q ss_pred cCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEE-cCCCCEEEEEcCcceEEe
Q 023643 220 SEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITL-DASESWLVRVRATNYVIL 277 (279)
Q Consensus 220 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~~ 277 (279)
++.|.+||.. ++.+..+ ..+.. +++++| .|+++.|++++.++..++
T Consensus 236 --~~~v~~~~~~-g~~~~~~--------~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 236 --GDGVHVLTPD-GDELGRV--------LTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI 282 (296)
T ss_dssp --TTEEEEECTT-SCEEEEE--------ECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred --CCeEEEECCC-CCEEEEE--------ECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence 8889999986 7777777 34444 889999 689998998888876553
No 170
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.76 E-value=9.5e-16 Score=115.58 Aligned_cols=216 Identities=9% Similarity=0.010 Sum_probs=146.0
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
++.|.+|+..+...... ...+...+.++++++ +++++++.. ++.|.+|+.....
T Consensus 45 ~~~i~~~~~~~~~~~~~--~~~~~~~p~~i~~~~----~g~l~v~~~-~~~i~~~d~~~~~------------------- 98 (270)
T 1rwi_B 45 YGRVVKLATGSTGTTVL--PFNGLYQPQGLAVDG----AGTVYVTDF-NNRVVTLAAGSNN------------------- 98 (270)
T ss_dssp SCEEEEECC-----EEC--CCCSCCSCCCEEECT----TCCEEEEET-TTEEEEECTTCSC-------------------
T ss_pred CCcEEEecCCCcccceE--eeCCcCCcceeEECC----CCCEEEEcC-CCEEEEEeCCCce-------------------
Confidence 45677777655432111 112335678899999 888777766 8899999987531
Q ss_pred cccccc-CCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 82 PDGFLH-GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 82 ~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
...+. .....+..+++.|++. ++++...++.|.+|+.... ......... ..
T Consensus 99 -~~~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~---~~~~~~~~~----------------------~~ 150 (270)
T 1rwi_B 99 -QTVLPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSK---TQTVLPFTG----------------------LN 150 (270)
T ss_dssp -CEECCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCC---SCEECCCCS----------------------CC
T ss_pred -EeeeecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCc---eeEeecccc----------------------CC
Confidence 11111 2235688999999887 7777777889999974321 111100000 01
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
.+..++++++++++++...++.|.+||............+...+.+++++++|..+++...++.|.+||........ +.
T Consensus 151 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~ 229 (270)
T 1rwi_B 151 DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP 229 (270)
T ss_dssp SCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC
T ss_pred CceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec
Confidence 25789999999877776677899999988766554333344678999999999888888889999999986544332 21
Q ss_pred CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
..+...+.+++++++|+++++...++.|++|+
T Consensus 230 -------~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~ 261 (270)
T 1rwi_B 230 -------FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 261 (270)
T ss_dssp -------CCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred -------cCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence 22335678999999999888999999999875
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.76 E-value=1.2e-15 Score=116.17 Aligned_cols=204 Identities=11% Similarity=0.166 Sum_probs=142.6
Q ss_pred ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEec-CC
Q 023643 23 ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFY-GG 101 (279)
Q Consensus 23 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~ 101 (279)
++.....+++++| +++++++...++.|.+|+.... ....+. ......++...+..+++. ++
T Consensus 27 g~~~~p~~v~~~~----~g~l~v~~~~~~~i~~~d~~g~-~~~~~~-------------~~~~~~~~~~~p~~i~~~~~~ 88 (286)
T 1q7f_A 27 GQFTEPSGVAVNA----QNDIIVADTNNHRIQIFDKEGR-FKFQFG-------------ECGKRDSQLLYPNRVAVVRNS 88 (286)
T ss_dssp TCBSCEEEEEECT----TCCEEEEEGGGTEEEEECTTSC-EEEEEC-------------CBSSSTTCBSSEEEEEEETTT
T ss_pred CccCCCceEEECC----CCCEEEEECCCCEEEEECCCCc-EEEEec-------------ccCCCcccccCceEEEEEcCC
Confidence 3456789999999 8898888888999999998732 110000 000112345568899994 66
Q ss_pred CCceEEEEeeC-CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCC
Q 023643 102 NEDALLLSCGD-DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD 180 (279)
Q Consensus 102 ~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 180 (279)
+. ++++... ++.|++|+.. . .....+.... ...+..++++|+++++++...+
T Consensus 89 g~--l~v~~~~~~~~i~~~d~~-g---~~~~~~~~~~---------------------~~~~~~i~~~~~g~l~v~~~~~ 141 (286)
T 1q7f_A 89 GD--IIVTERSPTHQIQIYNQY-G---QFVRKFGATI---------------------LQHPRGVTVDNKGRIIVVECKV 141 (286)
T ss_dssp TE--EEEEECGGGCEEEEECTT-S---CEEEEECTTT---------------------CSCEEEEEECTTSCEEEEETTT
T ss_pred Ce--EEEEcCCCCCEEEEECCC-C---cEEEEecCcc---------------------CCCceEEEEeCCCCEEEEECCC
Confidence 64 5555533 8899999942 2 1111111100 0125789999999877777778
Q ss_pred CeEEEEecCCCcEEEEee--cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEE
Q 023643 181 SCAYCWDVESSRIKMVFK--GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCIT 258 (279)
Q Consensus 181 ~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 258 (279)
+.|.+||.. ++.+..+. .+...+.+++++|+++++++...++.|++||. .++.+..+.. .++...+..++
T Consensus 142 ~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~------~g~~~~p~~i~ 213 (286)
T 1q7f_A 142 MRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGG------EGITNYPIGVG 213 (286)
T ss_dssp TEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESC------TTTSCSEEEEE
T ss_pred CEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEcc------CCccCCCcEEE
Confidence 999999964 66666664 34456899999999998888888999999997 5666666632 22335678999
Q ss_pred EcCCCCEEEEEcCcc-eEEeCC
Q 023643 259 LDASESWLVRVRATN-YVILFS 279 (279)
Q Consensus 259 ~~~~~~~l~~~~~d~-~i~~wd 279 (279)
++++|+++++...++ .|.+||
T Consensus 214 ~d~~G~l~v~~~~~~~~i~~~~ 235 (286)
T 1q7f_A 214 INSNGEILIADNHNNFNLTIFT 235 (286)
T ss_dssp ECTTCCEEEEECSSSCEEEEEC
T ss_pred ECCCCCEEEEeCCCCEEEEEEC
Confidence 999999988888876 999986
No 172
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.76 E-value=1.7e-15 Score=117.71 Aligned_cols=211 Identities=12% Similarity=0.091 Sum_probs=139.3
Q ss_pred eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643 19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF 98 (279)
Q Consensus 19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 98 (279)
..+..+...+.+++|+| ++++++++..++.|.+||..++ +.......+...+.++++
T Consensus 38 ~~~~~~~~~~~~~~~~~----~g~l~~~~~~~~~i~~~d~~~~-------------------~~~~~~~~~~~~~~~i~~ 94 (333)
T 2dg1_A 38 LEISKKGLQLEGLNFDR----QGQLFLLDVFEGNIFKINPETK-------------------EIKRPFVSHKANPAAIKI 94 (333)
T ss_dssp EEEESSCCCEEEEEECT----TSCEEEEETTTCEEEEECTTTC-------------------CEEEEEECSSSSEEEEEE
T ss_pred EEEeccCccccCcEECC----CCCEEEEECCCCEEEEEeCCCC-------------------cEEEEeeCCCCCcceEEE
Confidence 34445556778999999 8998888889999999999863 222222235567999999
Q ss_pred cCCCCceEEEEeeCC----CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeE
Q 023643 99 YGGNEDALLLSCGDD----GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAI 174 (279)
Q Consensus 99 ~~~~~~~~l~s~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 174 (279)
+|++. ++++...+ +.|.+||.+..... ....... ....+..++++|+++++
T Consensus 95 ~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~--------------------~~~~~~~i~~d~~g~l~ 149 (333)
T 2dg1_A 95 HKDGR--LFVCYLGDFKSTGGIFAATENGDNLQ---DIIEDLS--------------------TAYCIDDMVFDSKGGFY 149 (333)
T ss_dssp CTTSC--EEEEECTTSSSCCEEEEECTTSCSCE---EEECSSS--------------------SCCCEEEEEECTTSCEE
T ss_pred CCCCc--EEEEeCCCCCCCceEEEEeCCCCEEE---EEEccCc--------------------cCCcccceEECCCCCEE
Confidence 99987 77777666 68999997542111 0010000 00136899999999877
Q ss_pred EEecC------CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEE-EEecCCCeEEEEeCCC-CceEEEecCCcccc
Q 023643 175 FSAAG------DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQI-VTGSEDGTARIWDCKS-GKCIKVIDPVKDKQ 246 (279)
Q Consensus 175 ~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~ 246 (279)
++... .+.|..+|..+++..... .....+..++|+|+++.| ++.+.++.|.+||+.+ ++....+.......
T Consensus 150 v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~ 228 (333)
T 2dg1_A 150 FTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYY 228 (333)
T ss_dssp EEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEE
T ss_pred EEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEe
Confidence 76553 366777777655544332 233457899999999855 5556788999999864 44332221000000
Q ss_pred ccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 247 LKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 247 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+.++ ..+..++++++|+++++...++.|.+||
T Consensus 229 ~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d 260 (333)
T 2dg1_A 229 FTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFN 260 (333)
T ss_dssp CCSS-SEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred cCCC-CCCCceEECCCCCEEEEEcCCCEEEEEC
Confidence 0122 3567899999999888887788898886
No 173
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.76 E-value=8.9e-16 Score=117.42 Aligned_cols=201 Identities=10% Similarity=0.005 Sum_probs=140.4
Q ss_pred eeeeecccceEEEEECCCCCCCCC-EEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643 19 KEREILTRTVFRTVWGPSKDGSPD-TIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK 97 (279)
Q Consensus 19 ~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 97 (279)
..+..+.....+++|+| +++ +++++..++.|..|+..+ . ...+..+...+.+++
T Consensus 21 ~~l~~~~~~~eg~~~d~----~g~~l~~~~~~~~~i~~~~~~~-------------------~--~~~~~~~~~~~~~l~ 75 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVP----ARSAVIFSDVRQNRTWAWSDDG-------------------Q--LSPEMHPSHHQNGHC 75 (296)
T ss_dssp EEEECCCSSEEEEEEEG----GGTEEEEEEGGGTEEEEEETTS-------------------C--EEEEESSCSSEEEEE
T ss_pred EEEecCCccccCCeEeC----CCCEEEEEeCCCCEEEEEECCC-------------------C--eEEEECCCCCcceee
Confidence 44445566788999999 888 788888999999999986 2 334445667799999
Q ss_pred ecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEE-
Q 023643 98 FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFS- 176 (279)
Q Consensus 98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~- 176 (279)
+.|++. ++++...++.|.+||..+............. ....+..++++|+|+++++
T Consensus 76 ~~~dg~--l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~---------------------~~~~~~~i~~d~~G~l~vtd 132 (296)
T 3e5z_A 76 LNKQGH--LIACSHGLRRLERQREPGGEWESIADSFEGK---------------------KLNSPNDVCLAPDGSLWFSD 132 (296)
T ss_dssp ECTTCC--EEEEETTTTEEEEECSTTCCEEEEECEETTE---------------------ECCCCCCEEECTTSCEEEEE
T ss_pred ECCCCc--EEEEecCCCeEEEEcCCCCcEEEEeeccCCC---------------------CCCCCCCEEECCCCCEEEEC
Confidence 999997 7777777789999997543211100000000 0012578999999998776
Q ss_pred ---ec-------------CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC-CCce---E
Q 023643 177 ---AA-------------GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK-SGKC---I 236 (279)
Q Consensus 177 ---~~-------------~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~-~~~~---~ 236 (279)
|+ ..+.|..++.. ++. ..+..+......++|+|+++.+++.+.++.|.+|++. +++. .
T Consensus 133 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~ 210 (296)
T 3e5z_A 133 PTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQG 210 (296)
T ss_dssp CSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEE
T ss_pred CccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCC
Confidence 33 13467777765 443 3444566678899999999988888889999999987 5554 2
Q ss_pred EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
..+ . .+...+.+++++++|+++++. ++.|.+||
T Consensus 211 ~~~-~-------~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~ 243 (296)
T 3e5z_A 211 VHF-T-------VEPGKTDGLRVDAGGLIWASA--GDGVHVLT 243 (296)
T ss_dssp EEE-C-------CSSSCCCSEEEBTTSCEEEEE--TTEEEEEC
T ss_pred eEe-e-------CCCCCCCeEEECCCCCEEEEc--CCeEEEEC
Confidence 333 1 233456789999999977776 67788875
No 174
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.76 E-value=6.9e-16 Score=119.81 Aligned_cols=190 Identities=11% Similarity=0.045 Sum_probs=133.7
Q ss_pred ccceEEEEECCCCCCCCCEEEEecCC------------------------CcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVIASSD------------------------GSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~~~~d------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
-+.+.+++++| +++++++...+ ++|.+||..++
T Consensus 23 l~~v~~va~d~----~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g------------------- 79 (329)
T 3fvz_A 23 PGQVSGVALDS----KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA------------------- 79 (329)
T ss_dssp CSCEEEEEECT----TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC-------------------
T ss_pred cCCceEEEECC----CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC-------------------
Confidence 46799999999 89999888877 46888888763
Q ss_pred ccccccc-CCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643 81 EPDGFLH-GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV 159 (279)
Q Consensus 81 ~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (279)
+.+..+. ++-.....+++.|++. ++++...++.|++|+.+... .....+..... .+. .....
T Consensus 80 ~~~~~~~~~~~~~p~gia~d~~g~--l~v~d~~~~~v~~~~~~g~~--~~~~~~~~~~~-----------~g~--~~~~~ 142 (329)
T 3fvz_A 80 EILQSSGKNLFYLPHGLSIDTDGN--YWVTDVALHQVFKLDPHSKE--GPLLILGRSMQ-----------PGS--DQNHF 142 (329)
T ss_dssp CEEEEECTTTCSSEEEEEECTTSC--EEEEETTTTEEEEECTTCSS--CCSEEESBTTB-----------CCC--STTCC
T ss_pred eEEeccCCCccCCceEEEECCCCC--EEEEECCCCEEEEEeCCCCe--EEEEEecccCC-----------CCC--Ccccc
Confidence 2222222 3445688999999998 88888889999999974321 01111110000 000 00011
Q ss_pred CCceeEEEcC-CCCeEEEec-CCCeEEEEecCCCcEEEEeecC----------CcceEEEEEcCC-CcEEEEecCCCeEE
Q 023643 160 PENNAIAVDP-QGGAIFSAA-GDSCAYCWDVESSRIKMVFKGH----------SDYLHCIVARNS-TNQIVTGSEDGTAR 226 (279)
Q Consensus 160 ~~i~~~~~~~-~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~----------~~~i~~i~~~~~-~~~l~~~~~d~~i~ 226 (279)
.....++++| ++.++++.+ .++.|++|| .+++.+..+... -.....++++|+ +.++++...++.|+
T Consensus 143 ~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~ 221 (329)
T 3fvz_A 143 CQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQ 221 (329)
T ss_dssp SSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEE
Confidence 2357999999 777777775 689999999 567777776422 234889999998 88888888999999
Q ss_pred EEeCCCCceEEEecCCccccccCcceeeeEEEEcC
Q 023643 227 IWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDA 261 (279)
Q Consensus 227 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 261 (279)
+||..+++.+..+.. ..+...+..++|+|
T Consensus 222 ~~~~~~G~~~~~~~~------~~~~~~~~~~~~~p 250 (329)
T 3fvz_A 222 CFKTDTKEFVREIKH------ASFGRNVFAISYIP 250 (329)
T ss_dssp EEETTTCCEEEEECC------TTTTTCEEEEEEET
T ss_pred EEECCCCcEEEEEec------cccCCCcceeeecC
Confidence 999988999888853 23445677888988
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.75 E-value=1.3e-16 Score=135.36 Aligned_cols=203 Identities=10% Similarity=-0.002 Sum_probs=133.0
Q ss_pred cccceEEEEECCCCCCCCCEEEEecCC----------CcEEEEeCCCCCcccccccCCcccceeeecccccccc-CCccC
Q 023643 24 LTRTVFRTVWGPSKDGSPDTIVIASSD----------GSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLH-GHDGP 92 (279)
Q Consensus 24 ~~~~v~~~~~~~~~~~~~~~l~~~~~d----------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~ 92 (279)
|...+..++|+| |++.|++++.+ ..|++|++.+..... ......+. .+...
T Consensus 128 ~~~~~~~~~~sp----Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------------~~~~~~l~~~~~~~ 189 (662)
T 3azo_A 128 GGLRWADPVLLP----ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD--------------RSAVRELSDDAHRF 189 (662)
T ss_dssp TCEEEEEEEEET----TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC--------------GGGSEESSCSCSSE
T ss_pred CCccccCcEECC----CCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc--------------CCceeEEEecCCCc
Confidence 567889999999 99999998876 589999988610000 01122333 44566
Q ss_pred eEEEEecCCCCceEEEEeeCCC--------cEEEeecC-CCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCce
Q 023643 93 AYDVKFYGGNEDALLLSCGDDG--------RICGWRWK-EFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENN 163 (279)
Q Consensus 93 v~~~~~~~~~~~~~l~s~~~dg--------~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 163 (279)
+..++|+|+++ +|+.++.++ .|++||++ +... .....+...+. ..+.
T Consensus 190 ~~~~~~SpDG~--~la~~~~~~~~~~~~~~~i~~~d~~~~g~~-~~~~~l~~~~~---------------------~~~~ 245 (662)
T 3azo_A 190 VTGPRLSPDGR--QAVWLAWDHPRMPWEGTELKTARVTEDGRF-ADTRTLLGGPE---------------------EAIA 245 (662)
T ss_dssp ECCCEECTTSS--EEEEEEECTTCCTTTCEEEEEEEECTTSCE-EEEEEEEEETT---------------------BCEE
T ss_pred ccCceECCCCC--EEEEEECCCCCCCCCCcEEEEEEECCCCcc-cccEEeCCCCC---------------------ceEc
Confidence 78899999998 888777553 79999986 2210 01111111100 0257
Q ss_pred eEEEcCCCCeEEEecCCC--eEEEEecCCCcEEEEeecCCcc--------eEEEEEcCCCcEEEEecCCCeEEEE--eCC
Q 023643 164 AIAVDPQGGAIFSAAGDS--CAYCWDVESSRIKMVFKGHSDY--------LHCIVARNSTNQIVTGSEDGTARIW--DCK 231 (279)
Q Consensus 164 ~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~--------i~~i~~~~~~~~l~~~~~d~~i~vw--d~~ 231 (279)
.+.|+|++++++++..++ .|.+||+.+++.......+... +..++|+|+++++++++. +.++|| |+.
T Consensus 246 ~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~ 324 (662)
T 3azo_A 246 QAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPE 324 (662)
T ss_dssp EEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETT
T ss_pred ceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECC
Confidence 899999999888887787 6777787777765544433322 567899999999999998 999999 655
Q ss_pred CCceEEEecCCccccccCcceeeeEE-EEcCCCCEEEEEcCcceEEeC
Q 023643 232 SGKCIKVIDPVKDKQLKGVISCVSCI-TLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~d~~i~~w 278 (279)
+++ +..+ ..+...+..+ +++++.-++++++.+....+|
T Consensus 325 ~~~-~~~l--------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 325 SGE-LVDA--------AGPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp TTE-EEEC--------CSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred CCc-EEEe--------cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence 555 5555 4455566666 555444445555666554444
No 176
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.75 E-value=2e-16 Score=125.61 Aligned_cols=203 Identities=8% Similarity=0.060 Sum_probs=136.3
Q ss_pred eeeeeecccceEE-----EEECCCCCCCCCEEEEecC-CCc--EEEEeCCCCCcccccccCCcccceeeeccccccccCC
Q 023643 18 LKEREILTRTVFR-----TVWGPSKDGSPDTIVIASS-DGS--ITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGH 89 (279)
Q Consensus 18 ~~~~~~~~~~v~~-----~~~~~~~~~~~~~l~~~~~-dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 89 (279)
+..+..|...... .+|+| |+++|+.++. +|. |.+||+.+ ++......++
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~Sp----Dg~~l~~~~~~~g~~~l~~~d~~~-------------------g~~~~lt~~~ 79 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTR----DGSKLLFGGAFDGPWNYYLLDLNT-------------------QVATQLTEGR 79 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCT----TSCEEEEEECTTSSCEEEEEETTT-------------------CEEEECCCSS
T ss_pred eEEecCCcccccchhhcCccCCC----CCCEEEEEEcCCCCceEEEEeCCC-------------------CceEEeeeCC
Confidence 4455555555555 78999 9999988887 674 78888887 3444445556
Q ss_pred ccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCce--eEEE
Q 023643 90 DGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENN--AIAV 167 (279)
Q Consensus 90 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~ 167 (279)
...+..+.|+|+++ .|+.++.++.|++||+.+..... ....... .+. ...+
T Consensus 80 ~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~~g~~~~-~~~~~~~------------------------~~~~~~~~~ 132 (388)
T 3pe7_A 80 GDNTFGGFLSPDDD--ALFYVKDGRNLMRVDLATLEENV-VYQVPAE------------------------WVGYGTWVA 132 (388)
T ss_dssp CBCSSSCEECTTSS--EEEEEETTTEEEEEETTTCCEEE-EEECCTT------------------------EEEEEEEEE
T ss_pred CCCccceEEcCCCC--EEEEEeCCCeEEEEECCCCccee-eeechhh------------------------cccccceeE
Confidence 65565678999998 99999999999999987542111 1111110 011 2234
Q ss_pred cCCCCeEEEe----------------------cCCCeEEEEecCCCcEEEEeecCCcceEEEEEcC-CCcEEEEecCC--
Q 023643 168 DPQGGAIFSA----------------------AGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARN-STNQIVTGSED-- 222 (279)
Q Consensus 168 ~~~~~~l~~~----------------------~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d-- 222 (279)
+|++..++.. ..+..|.+||+.+++..... .+...+..++|+| +|+.|+..+.+
T Consensus 133 ~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~ 211 (388)
T 3pe7_A 133 NSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPH 211 (388)
T ss_dssp CTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCT
T ss_pred CCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCC
Confidence 8888877632 24578999999988765544 4667789999999 99988876653
Q ss_pred ----CeEEEEeCCCCceEEEecCCccccccCc-ceeeeEEEEcCCCCEEEEEcCc-----ceEEeCC
Q 023643 223 ----GTARIWDCKSGKCIKVIDPVKDKQLKGV-ISCVSCITLDASESWLVRVRAT-----NYVILFS 279 (279)
Q Consensus 223 ----~~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-----~~i~~wd 279 (279)
..|.++|+..++.. .+. ... ...+..++|+|||+.|+..+.+ ..|.+||
T Consensus 212 ~~~~~~l~~~d~~~~~~~-~l~-------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 270 (388)
T 3pe7_A 212 DLVDARMWLINEDGTNMR-KVK-------THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSAD 270 (388)
T ss_dssp TTSSCSEEEEETTSCCCE-ESC-------CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEEC
T ss_pred CCCcceEEEEeCCCCceE-Eee-------eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEe
Confidence 37888887655443 332 122 1457788999999987654432 2388876
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.74 E-value=2.6e-16 Score=123.02 Aligned_cols=199 Identities=8% Similarity=0.005 Sum_probs=127.0
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCC---C--cEEEEeCCCCCcccccccCCcccce
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSD---G--SITSYSIPSCISKLPLGLSNSKVQQ 76 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d---g--~i~iw~~~~~~~~~~~~~~~~~~~~ 76 (279)
++.|.+||+++.... .+ ..+..++|+| +|++||..+.+ + .|.+|++.++
T Consensus 42 ~~~l~~~d~~~~~~~---~l----~~~~~~~~Sp----Dg~~la~~~~~~~~~~~~l~~~~~~~g--------------- 95 (347)
T 2gop_A 42 ENTIVIENLKNNARR---FI----ENATMPRISP----DGKKIAFMRANEEKKVSEIWVADLETL--------------- 95 (347)
T ss_dssp EEEEEEEETTTCCEE---EE----ESCEEEEECT----TSSEEEEEEEETTTTEEEEEEEETTTT---------------
T ss_pred cceEEEEeCCCCceE---Ec----ccCCCeEECC----CCCEEEEEEeccCCCcceEEEEECCCC---------------
Confidence 346777887765432 22 5688899999 99999887654 3 3777787762
Q ss_pred eeeccccccccCCccCeEEEEecCCCCceEEEEeeCC---------------------------CcEEEeecCCCccCcc
Q 023643 77 LLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDD---------------------------GRICGWRWKEFTESKV 129 (279)
Q Consensus 77 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---------------------------g~i~iw~~~~~~~~~~ 129 (279)
+...... +.. +..+.|+|+++ .|+.++.+ ..|.+||+.....
T Consensus 96 ----~~~~l~~-~~~-~~~~~wspdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~--- 164 (347)
T 2gop_A 96 ----SSKKILE-AKN-IRSLEWNEDSR--KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV--- 164 (347)
T ss_dssp ----EEEEEEE-ESE-EEEEEECTTSS--EEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE---
T ss_pred ----ceEEEEc-CCC-ccceeECCCCC--EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE---
Confidence 2222222 233 89999999998 77776632 4577777653211
Q ss_pred eeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCC-------eEEEEecCCCcEEEEeecCCc
Q 023643 130 PINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDS-------CAYCWDVESSRIKMVFKGHSD 202 (279)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-------~i~i~d~~~~~~~~~~~~~~~ 202 (279)
...+.. . .+..+.|+|++ +++++..+. ...+|.+.+++.. .+..+ .
T Consensus 165 ~~~l~~-~-----------------------~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~l~~~-~ 217 (347)
T 2gop_A 165 IEEFEK-P-----------------------RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-KMFEK-V 217 (347)
T ss_dssp EEEEEE-E-----------------------TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE-EEEEE-E
T ss_pred EeeecC-C-----------------------CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE-EeccC-c
Confidence 011100 0 15788999999 777775432 3344443355443 33334 4
Q ss_pred ceEEEEEcCCCcEEEEecCC--------CeEEEEeCCCCceEEEecCCccccccCcceeeeE-EEEcCCCCEEEEEcCcc
Q 023643 203 YLHCIVARNSTNQIVTGSED--------GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSC-ITLDASESWLVRVRATN 273 (279)
Q Consensus 203 ~i~~i~~~~~~~~l~~~~~d--------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d~ 273 (279)
.+..+ +|+|++|+.++.+ ..|.+|| +++..... ..+...+.. +.|+ ++ ++++++.++
T Consensus 218 ~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~--------~~~~~~~~~~~~~s-dg-~~~~~~~~~ 283 (347)
T 2gop_A 218 SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL--------DEVDRGVGQAKIKD-GK-VYFTLFEEG 283 (347)
T ss_dssp SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS--------TTCCSEEEEEEEET-TE-EEEEEEETT
T ss_pred ceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEecc--------ccCCcccCCccEEc-Cc-EEEEEecCC
Confidence 55544 8999988777644 4688888 55544333 355567776 8999 88 888999999
Q ss_pred eEEeC
Q 023643 274 YVILF 278 (279)
Q Consensus 274 ~i~~w 278 (279)
.+++|
T Consensus 284 ~~~l~ 288 (347)
T 2gop_A 284 SVNLY 288 (347)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 88887
No 178
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.71 E-value=2.5e-14 Score=111.22 Aligned_cols=214 Identities=11% Similarity=-0.004 Sum_probs=136.3
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCC----CcEEEEeCCCCCcccccccCCccccee
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSD----GSITSYSIPSCISKLPLGLSNSKVQQL 77 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~ 77 (279)
+|.|.+||.++.... .....+...+.+++++| +++++++...+ +.|.+||..+...
T Consensus 65 ~~~i~~~d~~~~~~~--~~~~~~~~~~~~i~~~~----dg~l~v~~~~~~~~~~~i~~~d~~~~~~-------------- 124 (333)
T 2dg1_A 65 EGNIFKINPETKEIK--RPFVSHKANPAAIKIHK----DGRLFVCYLGDFKSTGGIFAATENGDNL-------------- 124 (333)
T ss_dssp TCEEEEECTTTCCEE--EEEECSSSSEEEEEECT----TSCEEEEECTTSSSCCEEEEECTTSCSC--------------
T ss_pred CCEEEEEeCCCCcEE--EEeeCCCCCcceEEECC----CCcEEEEeCCCCCCCceEEEEeCCCCEE--------------
Confidence 567888887765422 11223567899999999 88888887666 6899999886321
Q ss_pred eeccccccc--cCCccCeEEEEecCCCCceEEEEeeC------CCcEEEeecCCCccCcceeeeccCcccceEEeecCCC
Q 023643 78 LGIEPDGFL--HGHDGPAYDVKFYGGNEDALLLSCGD------DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQH 149 (279)
Q Consensus 78 ~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (279)
...+ ..+...+..+.+.|++. ++++... .+.|..++.+.. . ...+... .
T Consensus 125 -----~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~l~~~~~~~~---~-~~~~~~~-~----------- 181 (333)
T 2dg1_A 125 -----QDIIEDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFR---T-VTPIIQN-I----------- 181 (333)
T ss_dssp -----EEEECSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSC---C-EEEEEEE-E-----------
T ss_pred -----EEEEccCccCCcccceEECCCCC--EEEEeccccccCCCceEEEEeCCCC---E-EEEeecC-C-----------
Confidence 1111 12345689999999987 6666543 234444443211 1 1111000 0
Q ss_pred CCccccCCCCCCceeEEEcCCCCeEEE-ecCCCeEEEEecCC-CcEEEE--------eecCCcceEEEEEcCCCcEEEEe
Q 023643 150 KGPWGALSPVPENNAIAVDPQGGAIFS-AAGDSCAYCWDVES-SRIKMV--------FKGHSDYLHCIVARNSTNQIVTG 219 (279)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~-~~~~~~--------~~~~~~~i~~i~~~~~~~~l~~~ 219 (279)
..+..++|+|+++.+++ .+.++.|.+||+.+ +..+.. +.++ ..+..++++++|+++++.
T Consensus 182 ----------~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~ 250 (333)
T 2dg1_A 182 ----------SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAM 250 (333)
T ss_dssp ----------SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEE
T ss_pred ----------CcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEE
Confidence 01478999999986654 45678999999964 332221 1122 467889999999988888
Q ss_pred cCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643 220 SEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT 272 (279)
Q Consensus 220 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 272 (279)
..++.|.+||. .++.+..+..+.. ..+|...+.+++|+|++..|+.++.+
T Consensus 251 ~~~~~v~~~d~-~g~~~~~~~~~~~--~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 251 YGQGRVLVFNK-RGYPIGQILIPGR--DEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp ETTTEEEEECT-TSCEEEEEECTTG--GGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred cCCCEEEEECC-CCCEEEEEEcCCC--ccccccCcceEEECCCCCEEEEEeCc
Confidence 78899999998 5676666632210 01223368899999998777655544
No 179
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.71 E-value=1.9e-16 Score=125.65 Aligned_cols=215 Identities=8% Similarity=-0.041 Sum_probs=133.2
Q ss_pred eeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccc
Q 023643 5 STNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDG 84 (279)
Q Consensus 5 v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (279)
|.+||+++... ......+...+..++|+| +++.|+.++.++.|++||+.++ +...
T Consensus 62 l~~~d~~~g~~--~~lt~~~~~~~~~~~~sp----dg~~l~~~~~~~~l~~~d~~~g-------------------~~~~ 116 (388)
T 3pe7_A 62 YYLLDLNTQVA--TQLTEGRGDNTFGGFLSP----DDDALFYVKDGRNLMRVDLATL-------------------EENV 116 (388)
T ss_dssp EEEEETTTCEE--EECCCSSCBCSSSCEECT----TSSEEEEEETTTEEEEEETTTC-------------------CEEE
T ss_pred EEEEeCCCCce--EEeeeCCCCCccceEEcC----CCCEEEEEeCCCeEEEEECCCC-------------------ccee
Confidence 66677776543 333444555555778999 9999999999999999999984 3333
Q ss_pred cccCCccCeEEEE--ecCCCCceEEEE----------------------eeCCCcEEEeecCCCccCcceeeeccCcccc
Q 023643 85 FLHGHDGPAYDVK--FYGGNEDALLLS----------------------CGDDGRICGWRWKEFTESKVPINLQGNHVKP 140 (279)
Q Consensus 85 ~~~~h~~~v~~~~--~~~~~~~~~l~s----------------------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 140 (279)
.+..+...+.... ++|++. +++. .+.+..|.+||+.+... ..+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~----~~l~~~~--- 187 (388)
T 3pe7_A 117 VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES----TVILQEN--- 187 (388)
T ss_dssp EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE----EEEEEES---
T ss_pred eeechhhcccccceeECCCCC--eeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce----EEeecCC---
Confidence 3334444443333 478887 6653 22446788888764311 1111000
Q ss_pred eEEeecCCCCCccccCCCCCCceeEEEcC-CCCeEEEecCC------CeEEEEecCCCcEEEEeecCC--cceEEEEEcC
Q 023643 141 VLDLVNHQHKGPWGALSPVPENNAIAVDP-QGGAIFSAAGD------SCAYCWDVESSRIKMVFKGHS--DYLHCIVARN 211 (279)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~--~~i~~i~~~~ 211 (279)
..+..+.|+| +++.|+....+ ..|.++|+..++... +..+. ..+...+|+|
T Consensus 188 -------------------~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~sp 247 (388)
T 3pe7_A 188 -------------------QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTHAEGESCTHEFWVP 247 (388)
T ss_dssp -------------------SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCCCTTEEEEEEEECT
T ss_pred -------------------ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeCCCCcccccceECC
Confidence 0257889999 99988776643 378888887655443 33333 3578889999
Q ss_pred CCcEEEEecC-----CCeEEEEeCCCCceEEEecCCccccccCccee---eeEEEEcCCCCEEEEE---------cCcce
Q 023643 212 STNQIVTGSE-----DGTARIWDCKSGKCIKVIDPVKDKQLKGVISC---VSCITLDASESWLVRV---------RATNY 274 (279)
Q Consensus 212 ~~~~l~~~~~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~---------~~d~~ 274 (279)
+|+.|+..+. ++.|++||+.+++....... .++... ...++|+|||+.|+.. ..+..
T Consensus 248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 321 (388)
T 3pe7_A 248 DGSALVYVSYLKGSPDRFIYSADPETLENRQLTSM------PACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPF 321 (388)
T ss_dssp TSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEE------CCEEEEEECTTSSEEEEEECCC------------CCCCE
T ss_pred CCCEEEEEecCCCCCcceEEEEecCCCceEEEEcC------CCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCE
Confidence 9997765443 12499999998875433211 121111 2234799999988754 44567
Q ss_pred EEeCC
Q 023643 275 VILFS 279 (279)
Q Consensus 275 i~~wd 279 (279)
|.+||
T Consensus 322 i~~~d 326 (388)
T 3pe7_A 322 LYVFN 326 (388)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88775
No 180
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.70 E-value=5.4e-15 Score=114.68 Aligned_cols=215 Identities=11% Similarity=0.021 Sum_probs=142.3
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
+|.|.+||.++.+. +..+. .......+++++ ++.++++...++.|.+||..+..
T Consensus 63 ~~~v~viD~~t~~~--~~~i~-~~~~p~~i~~~~----~g~lyv~~~~~~~v~~iD~~t~~------------------- 116 (328)
T 3dsm_A 63 SHVIFAIDINTFKE--VGRIT-GFTSPRYIHFLS----DEKAYVTQIWDYRIFIINPKTYE------------------- 116 (328)
T ss_dssp GTEEEEEETTTCCE--EEEEE-CCSSEEEEEEEE----TTEEEEEEBSCSEEEEEETTTTE-------------------
T ss_pred CCEEEEEECcccEE--EEEcC-CCCCCcEEEEeC----CCeEEEEECCCCeEEEEECCCCe-------------------
Confidence 47889999887643 44443 346788999998 77555555488999999998742
Q ss_pred ccccccCC-----ccCeEEEEecCCCCceEEEEee-CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcccc
Q 023643 82 PDGFLHGH-----DGPAYDVKFYGGNEDALLLSCG-DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGA 155 (279)
Q Consensus 82 ~~~~~~~h-----~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (279)
....+... ......+++ ..+. ++++.. .++.|.++|+.+... ........
T Consensus 117 ~~~~i~~g~~~~~~~~p~~i~~-~~~~--lyv~~~~~~~~v~viD~~t~~~---~~~i~~g~------------------ 172 (328)
T 3dsm_A 117 ITGYIECPDMDMESGSTEQMVQ-YGKY--VYVNCWSYQNRILKIDTETDKV---VDELTIGI------------------ 172 (328)
T ss_dssp EEEEEECTTCCTTTCBCCCEEE-ETTE--EEEEECTTCCEEEEEETTTTEE---EEEEECSS------------------
T ss_pred EEEEEEcCCccccCCCcceEEE-ECCE--EEEEcCCCCCEEEEEECCCCeE---EEEEEcCC------------------
Confidence 22222211 113445666 3332 444443 489999999865321 11111100
Q ss_pred CCCCCCceeEEEcCCCCeEEEecCC----------CeEEEEecCCCcEEEEeecC-CcceEEEEEcCCCcEEEEecCCCe
Q 023643 156 LSPVPENNAIAVDPQGGAIFSAAGD----------SCAYCWDVESSRIKMVFKGH-SDYLHCIVARNSTNQIVTGSEDGT 224 (279)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~l~~~~~d----------~~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~ 224 (279)
....+.++|++++++++..+ +.|.++|..+++....+... ......++++|+++.|.++.. .
T Consensus 173 -----~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~ 245 (328)
T 3dsm_A 173 -----QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--D 245 (328)
T ss_dssp -----CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--S
T ss_pred -----CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--E
Confidence 13578899999877766554 78999999999888777533 236899999999988887765 8
Q ss_pred EEEEeCCCCceEEEecCCccccccCcceeeeEEEEcC-CCCEEEEE----cCcceEEeCC
Q 023643 225 ARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDA-SESWLVRV----RATNYVILFS 279 (279)
Q Consensus 225 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~----~~d~~i~~wd 279 (279)
|.+||..+++...... +........+++++| ++.++++. ..++.|.+||
T Consensus 246 v~~~d~~t~~~~~~~~------~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 246 IWRMPVEADRVPVRPF------LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp EEEEETTCSSCCSSCS------BCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred EEEEECCCCceeeeee------ecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 9999998887532110 011134678899999 56666666 6789999986
No 181
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.70 E-value=2.4e-14 Score=108.03 Aligned_cols=215 Identities=7% Similarity=-0.049 Sum_probs=152.0
Q ss_pred CCceeeeccccccccceeeeeecc-cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 2 CGDSTNWDEDAYRKSILKEREILT-RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
|+.|.+||.++++ .+..+..+. ..+.+++++| ++++|++ .++.|..||. + +
T Consensus 14 ~~~v~~~d~~tG~--~~w~~~~~~~~~~~~~~~~p----dG~ilvs--~~~~V~~~d~-~-------------------G 65 (276)
T 3no2_A 14 WNKIAIINKDTKE--IVWEYPLEKGWECNSVAATK----AGEILFS--YSKGAKMITR-D-------------------G 65 (276)
T ss_dssp CSEEEEEETTTTE--EEEEEECCTTCCCCEEEECT----TSCEEEE--CBSEEEEECT-T-------------------S
T ss_pred CCEEEEEECCCCe--EEEEeCCCccCCCcCeEECC----CCCEEEe--CCCCEEEECC-C-------------------C
Confidence 7889999986664 355666554 4788999999 8998883 4678999998 5 3
Q ss_pred cccccccCC-ccCeEEEEecCCCCceEEEEeeC-CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643 81 EPDGFLHGH-DGPAYDVKFYGGNEDALLLSCGD-DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP 158 (279)
Q Consensus 81 ~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (279)
+.+..+..+ ...+.++.+.|+++ ++++.+. ++.|..++.+ .+....+...... ...+
T Consensus 66 ~~~W~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~~----Gk~l~~~~~~~~~------~~~~--------- 124 (276)
T 3no2_A 66 RELWNIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNMK----GEVLSKTEFETGI------ERPH--------- 124 (276)
T ss_dssp CEEEEEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECTT----SCEEEEEEECCSC------SSGG---------
T ss_pred CEEEEEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeCC----CCEEEEEeccCCC------Cccc---------
Confidence 444444443 24688899999998 8888776 6777766642 1211111100000 0000
Q ss_pred CCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE
Q 023643 159 VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV 238 (279)
Q Consensus 159 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 238 (279)
.....+++.++++++++...++.|..||.. ++.+.++... ..+.++...++++.+++++.++.|..+|..+|+.+.+
T Consensus 125 -~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~ 201 (276)
T 3no2_A 125 -AQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRR 201 (276)
T ss_dssp -GSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEE
T ss_pred -ccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEE
Confidence 013456789999999999999999999998 9999998864 4456778889999999999999999999999999998
Q ss_pred ecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643 239 IDPVKDKQLKGVISCVSCITLDASESWLVRVR 270 (279)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 270 (279)
+...... ......+..++..++|.++++..
T Consensus 202 ~~~~~~~--~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 202 VNANDIE--GVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEGGGSB--SCCCSEEEEEEECTTSCEEEEEE
T ss_pred ecCCCCC--CccccccccceEcCCCCEEEEec
Confidence 8532100 01224578888999999888873
No 182
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.68 E-value=2.2e-15 Score=117.83 Aligned_cols=190 Identities=10% Similarity=0.037 Sum_probs=129.9
Q ss_pred cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643 26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA 105 (279)
Q Consensus 26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 105 (279)
.++..+++++ ...++++|+.++ +++|++........ .... . .++.. ...+.. |..|+| ++.
T Consensus 38 ~~~nlLais~----~~gll~a~~~~~-l~v~~~~~l~~~~~--~~~~--~----~~~~~-~~~lp~-V~~l~f--d~~-- 98 (388)
T 1xip_A 38 ASLQNLDISN----SKSLFVAASGSK-AVVGELQLLRDHIT--SDST--P----LTFKW-EKEIPD-VIFVCF--HGD-- 98 (388)
T ss_dssp SCCBCEEEET----TTTEEEEEETTE-EEEEEHHHHHHHHH--SSSC--C----CCCSE-EEECTT-EEEEEE--ETT--
T ss_pred ccccEEEEcC----CCCEEEEeCCCE-EEEEEhhHhhhhhc--cccc--c----ccceE-EeeCCC-eeEEEE--CCC--
Confidence 4689999999 889999999884 66799765210000 0000 0 11111 223556 999999 776
Q ss_pred EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEE
Q 023643 106 LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYC 185 (279)
Q Consensus 106 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 185 (279)
+|+++ .++.|++||++..........+. . .+.++.+.+. .+++++.||.|.+
T Consensus 99 ~L~v~-~~~~l~v~dv~sl~~~~~~~~~~----~---------------------~v~~i~~~~p--~~av~~~dG~L~v 150 (388)
T 1xip_A 99 QVLVS-TRNALYSLDLEELSEFRTVTSFE----K---------------------PVFQLKNVNN--TLVILNSVNDLSA 150 (388)
T ss_dssp EEEEE-ESSEEEEEESSSTTCEEEEEECS----S---------------------CEEEEEECSS--EEEEEETTSEEEE
T ss_pred EEEEE-cCCcEEEEEchhhhccCccceee----c---------------------ceeeEEecCC--CEEEEECCCCEEE
Confidence 88888 88999999987653222111111 1 1455555543 3888899999999
Q ss_pred EecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce--EEEecCCcccc-ccCcceeeeEEEEcCC
Q 023643 186 WDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC--IKVIDPVKDKQ-LKGVISCVSCITLDAS 262 (279)
Q Consensus 186 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~-~~~~~~~v~~~~~~~~ 262 (279)
||+.++.... +...|+|++|+|.| ++.|..||++++|+...++. ..++..+.... ..+|...|.++.|.++
T Consensus 151 ~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~ 224 (388)
T 1xip_A 151 LDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSP 224 (388)
T ss_dssp EETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSS
T ss_pred EEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecC
Confidence 9999877643 44689999999999 67788999999999887775 56664322110 0246788999999999
Q ss_pred CCEEEE
Q 023643 263 ESWLVR 268 (279)
Q Consensus 263 ~~~l~~ 268 (279)
+.++++
T Consensus 225 ~~flv~ 230 (388)
T 1xip_A 225 QDFLAV 230 (388)
T ss_dssp SEEEEE
T ss_pred CeEEEE
Confidence 998886
No 183
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.68 E-value=2.3e-16 Score=125.46 Aligned_cols=218 Identities=5% Similarity=-0.138 Sum_probs=123.5
Q ss_pred ceeeeccccccccceeeeeecccc-eEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccc
Q 023643 4 DSTNWDEDAYRKSILKEREILTRT-VFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEP 82 (279)
Q Consensus 4 ~v~iw~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (279)
.|.+||+++.... .+..+... ...+.|+| ++++|+.++.++.|.+|++.+++........... ...++.
T Consensus 61 ~l~~~d~~~~~~~---~l~~~~~~~~~~~~~sp----dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~---~~~g~~ 130 (396)
T 3c5m_A 61 NYYLLNLETQQAV---QLTEGKGDNTFGGFIST----DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEW---KGYGTW 130 (396)
T ss_dssp EEEEEETTTTEEE---ECCCSSCBCTTTCEECT----TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTE---EEEEEE
T ss_pred eEEEEECCCCcEE---EeecCCCCccccceECC----CCCEEEEEEcCCcEEEEECCCCCcEEEEeccccc---CCCCCE
Confidence 4666777665422 22222233 33478999 9999999999999999999875322111100000 000000
Q ss_pred cccccCCc-c--CeEEEEecCCCCceEEEEe-----eCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccc
Q 023643 83 DGFLHGHD-G--PAYDVKFYGGNEDALLLSC-----GDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWG 154 (279)
Q Consensus 83 ~~~~~~h~-~--~v~~~~~~~~~~~~~l~s~-----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (279)
+....... . ....+.|+|+++ .++.. ..+..|.+||+..... .......
T Consensus 131 l~~~~~~~~~~~~~~~~~~spdg~--~~~~~~~~~~~~~~~l~~~d~~~g~~---~~~~~~~------------------ 187 (396)
T 3c5m_A 131 VANSDCTKLVGIEILKRDWQPLTS--WEKFAEFYHTNPTCRLIKVDIETGEL---EVIHQDT------------------ 187 (396)
T ss_dssp EECTTSSEEEEEEEEGGGCCCCCS--HHHHHHHHHTCCCEEEEEEETTTCCE---EEEEEES------------------
T ss_pred EEeccCCccccccccccccCCCCc--ceeeeeeccCCCcceEEEEECCCCcE---EeeccCC------------------
Confidence 00000000 0 000034677776 55443 3566788888754311 1111000
Q ss_pred cCCCCCCceeEEEcC-CCCeEEEecCC------CeEEEEecCCCcEEEEeecC-CcceEEEEEcCCCcEEEEecCC----
Q 023643 155 ALSPVPENNAIAVDP-QGGAIFSAAGD------SCAYCWDVESSRIKMVFKGH-SDYLHCIVARNSTNQIVTGSED---- 222 (279)
Q Consensus 155 ~~~~~~~i~~~~~~~-~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d---- 222 (279)
..+..+.|+| ++..|+..+.+ ..|.+||+..++........ ...+..++|+|+|++|+.++.+
T Consensus 188 -----~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 262 (396)
T 3c5m_A 188 -----AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQT 262 (396)
T ss_dssp -----SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTC
T ss_pred -----cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCc
Confidence 1257889999 78766665443 46899998766544433321 3357889999999987776543
Q ss_pred -CeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcC-CCCEEEEEc
Q 023643 223 -GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDA-SESWLVRVR 270 (279)
Q Consensus 223 -~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 270 (279)
+.|++||+.+++....... .+ .. +.|+| +|+++++++
T Consensus 263 ~~~l~~~d~~~g~~~~l~~~------~~----~~-~~~s~~dg~~l~~~~ 301 (396)
T 3c5m_A 263 DRVIYKANPETLENEEVMVM------PP----CS-HLMSNFDGSLMVGDG 301 (396)
T ss_dssp CEEEEEECTTTCCEEEEEEC------CS----EE-EEEECSSSSEEEEEE
T ss_pred cceEEEEECCCCCeEEeeeC------CC----CC-CCccCCCCceEEEec
Confidence 4599999988876543311 12 22 78999 999888754
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.67 E-value=1.2e-14 Score=124.25 Aligned_cols=199 Identities=6% Similarity=-0.112 Sum_probs=131.8
Q ss_pred cccceEEEEECCCCCCCCCEEEEecCCC-----cEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643 24 LTRTVFRTVWGPSKDGSPDTIVIASSDG-----SITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF 98 (279)
Q Consensus 24 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 98 (279)
|...+..++||| |+++||.+..++ +|++||+.++ +.......+ ..+..++|
T Consensus 123 ~~~~~~~~~~SP----Dg~~la~~~~~~G~~~~~i~v~d~~tg-------------------~~~~~~~~~-~~~~~~~w 178 (710)
T 2xdw_A 123 GTVALRGYAFSE----DGEYFAYGLSASGSDWVTIKFMKVDGA-------------------KELPDVLER-VKFSCMAW 178 (710)
T ss_dssp SCEEEEEEEECT----TSSEEEEEEEETTCSCEEEEEEETTTT-------------------EEEEEEEEE-ECSCCEEE
T ss_pred CCEEEEEEEECC----CCCEEEEEEcCCCCceEEEEEEECCCC-------------------CCCcccccC-cccceEEE
Confidence 334688999999 999998776543 8999999984 222211111 23667999
Q ss_pred cCCCCceEEEEeeCCCc----------------EEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCc
Q 023643 99 YGGNEDALLLSCGDDGR----------------ICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPEN 162 (279)
Q Consensus 99 ~~~~~~~~l~s~~~dg~----------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 162 (279)
+|+++ .|+.++.++. |++|++.+..... ........ + ...+
T Consensus 179 spDg~--~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~-~~v~~~~~-----------~---------~~~~ 235 (710)
T 2xdw_A 179 THDGK--GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFPD-----------E---------PKWM 235 (710)
T ss_dssp CTTSS--EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCTT-----------C---------TTCE
T ss_pred EeCCC--EEEEEEECCccccccccccccCCCCEEEEEECCCCcccc-eEEeccCC-----------C---------CeEE
Confidence 99998 8888877766 9999986432111 11111100 0 0124
Q ss_pred eeEEEcCCCCeEEEecC-----CCeEEEEecCC------Cc-EEEEeecCCcceEEEEEcCCCcEEEEecC----CCeEE
Q 023643 163 NAIAVDPQGGAIFSAAG-----DSCAYCWDVES------SR-IKMVFKGHSDYLHCIVARNSTNQIVTGSE----DGTAR 226 (279)
Q Consensus 163 ~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~------~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~----d~~i~ 226 (279)
..+.|+|++++|+.++. +..|++||+.+ +. ....+..+...+.. .|+|+|+.|+..+. .+.|.
T Consensus 236 ~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~ 314 (710)
T 2xdw_A 236 GGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLI 314 (710)
T ss_dssp EEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEE
T ss_pred EEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEE
Confidence 68899999998887654 56899999986 43 35556656665554 47888887665544 34699
Q ss_pred EEeCCCCce--EEEecCCccccccCcc--eeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 227 IWDCKSGKC--IKVIDPVKDKQLKGVI--SCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 227 vwd~~~~~~--~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
+||+.+++. ...+. .|. ..+..++|++++.++++...|+..+||
T Consensus 315 ~~d~~~~~~~~~~~l~--------~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~ 362 (710)
T 2xdw_A 315 NIDFTDPEESKWKVLV--------PEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQ 362 (710)
T ss_dssp EEETTSCCGGGCEEEE--------CCCSSCEEEEEEEETTTEEEEEEEETTEEEEE
T ss_pred EEeCCCCCcccceecc--------CCCCCCeEEEEEEEcCCEEEEEEEECCEEEEE
Confidence 999987642 23332 222 367888999888888888888865554
No 185
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.66 E-value=2.2e-14 Score=108.25 Aligned_cols=181 Identities=12% Similarity=-0.005 Sum_probs=135.3
Q ss_pred CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCc-cCeEEEEecCCCCceEEEEeeCCCcEEE
Q 023643 40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHD-GPAYDVKFYGGNEDALLLSCGDDGRICG 118 (279)
Q Consensus 40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~dg~i~i 118 (279)
.+++|++++.++.|.+||..+ ++.+..+..+. ..+.++.+.|+++ +|+ +.++.|..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~t-------------------G~~~w~~~~~~~~~~~~~~~~pdG~--ilv--s~~~~V~~ 60 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDT-------------------KEIVWEYPLEKGWECNSVAATKAGE--ILF--SYSKGAKM 60 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTT-------------------TEEEEEEECCTTCCCCEEEECTTSC--EEE--ECBSEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCC-------------------CeEEEEeCCCccCCCcCeEECCCCC--EEE--eCCCCEEE
Confidence 368999999999999999987 55556666554 4688999999997 777 34778999
Q ss_pred eecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC-CCeEEEEecCCCcEEEEe
Q 023643 119 WRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG-DSCAYCWDVESSRIKMVF 197 (279)
Q Consensus 119 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~ 197 (279)
||. +. +....+..... ..+.++.+.|+++.+++.+. ++.|..+|. +++.+..+
T Consensus 61 ~d~-~G---~~~W~~~~~~~---------------------~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~ 114 (276)
T 3no2_A 61 ITR-DG---RELWNIAAPAG---------------------CEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKT 114 (276)
T ss_dssp ECT-TS---CEEEEEECCTT---------------------CEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEE
T ss_pred ECC-CC---CEEEEEcCCCC---------------------ccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEE
Confidence 986 22 22222222110 02578889999999998877 788888886 68887776
Q ss_pred ec------CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643 198 KG------HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA 271 (279)
Q Consensus 198 ~~------~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 271 (279)
.. +......+++.++|+++++...++.|.+||.. |+.+.++... ....++.+.++++++++++.
T Consensus 115 ~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~---------~~~~~~~~~~~g~~~v~~~~ 184 (276)
T 3no2_A 115 EFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS---------GTPFSSAFLDNGDCLVACGD 184 (276)
T ss_dssp EECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS---------SCCCEEEECTTSCEEEECBT
T ss_pred eccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC---------CCccceeEcCCCCEEEEeCC
Confidence 52 22345566788999999999999999999987 9999888431 23456778899999999888
Q ss_pred cceEEeCC
Q 023643 272 TNYVILFS 279 (279)
Q Consensus 272 d~~i~~wd 279 (279)
++.|..+|
T Consensus 185 ~~~v~~~d 192 (276)
T 3no2_A 185 AHCFVQLN 192 (276)
T ss_dssp TSEEEEEC
T ss_pred CCeEEEEe
Confidence 88887765
No 186
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.66 E-value=2.1e-14 Score=111.35 Aligned_cols=217 Identities=10% Similarity=-0.010 Sum_probs=144.6
Q ss_pred CCceeeeccccccccceeee------eecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccc
Q 023643 2 CGDSTNWDEDAYRKSILKER------EILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQ 75 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 75 (279)
++.|.++|.++.+. .... .........+.+.. +.++++...++.|.+||..+
T Consensus 16 ~~~l~~~d~~t~~~--~~~i~~~~n~~~lg~~~~~i~~~~-----~~lyv~~~~~~~v~viD~~t--------------- 73 (328)
T 3dsm_A 16 NATLSYYDPATCEV--ENEVFYRANGFKLGDVAQSMVIRD-----GIGWIVVNNSHVIFAIDINT--------------- 73 (328)
T ss_dssp CBEEEEEETTTTEE--ECSHHHHHHSSCCBSCEEEEEEET-----TEEEEEEGGGTEEEEEETTT---------------
T ss_pred CceEEEEECCCCEE--hhhhHhhhcCcccCccceEEEEEC-----CEEEEEEcCCCEEEEEECcc---------------
Confidence 67899999887642 2111 01123456777743 56777777789999999998
Q ss_pred eeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcccc
Q 023643 76 QLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGA 155 (279)
Q Consensus 76 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (279)
++.+..+. .......+++++++. .+++...++.|.+||+.+... ......... .
T Consensus 74 ----~~~~~~i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~---~~~i~~g~~-----------~----- 127 (328)
T 3dsm_A 74 ----FKEVGRIT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEI---TGYIECPDM-----------D----- 127 (328)
T ss_dssp ----CCEEEEEE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEE---EEEEECTTC-----------C-----
T ss_pred ----cEEEEEcC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeE---EEEEEcCCc-----------c-----
Confidence 44444443 235678899988874 556655899999999865321 111111000 0
Q ss_pred CCCCCCceeEEEcCCCCeEEEec--CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC----------C
Q 023643 156 LSPVPENNAIAVDPQGGAIFSAA--GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED----------G 223 (279)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----------~ 223 (279)
........+++ ++..++++. .++.|.++|+.+++.+..+... .....++++|+|++++++..+ +
T Consensus 128 -~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~ 203 (328)
T 3dsm_A 128 -MESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAP 203 (328)
T ss_dssp -TTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCC
T ss_pred -ccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCc
Confidence 00001346666 345555554 4889999999999988887643 345788999999988887665 7
Q ss_pred eEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 224 TARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 224 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.|.++|..+++....+... .......++|+|++++|+++.. .|.+||
T Consensus 204 ~v~~id~~t~~v~~~~~~~-------~g~~p~~la~~~d~~~lyv~~~--~v~~~d 250 (328)
T 3dsm_A 204 SLYRIDAETFTVEKQFKFK-------LGDWPSEVQLNGTRDTLYWINN--DIWRMP 250 (328)
T ss_dssp EEEEEETTTTEEEEEEECC-------TTCCCEEEEECTTSCEEEEESS--SEEEEE
T ss_pred eEEEEECCCCeEEEEEecC-------CCCCceeEEEecCCCEEEEEcc--EEEEEE
Confidence 8999999999888776421 1135789999999998888765 666654
No 187
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.66 E-value=5.1e-13 Score=101.98 Aligned_cols=217 Identities=10% Similarity=-0.020 Sum_probs=146.6
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
+|.|.+||.+ ...... ....+...+.++++.+ ++.++++...++.|..|+.... ..
T Consensus 35 ~~~v~~~d~~-~~~~~~-~~~~~~~~~~~i~~~~----~g~l~v~~~~~~~i~~~~~~g~------------------~~ 90 (299)
T 2z2n_A 35 ANMISCINLD-GKITEY-PLPTPDAKVMCLTISS----DGEVWFTENAANKIGRITKKGI------------------IK 90 (299)
T ss_dssp TTEEEEECTT-CCEEEE-ECSSTTCCEEEEEECT----TSCEEEEETTTTEEEEECTTSC------------------EE
T ss_pred CCcEEEEcCC-CCeEEe-cCCcccCceeeEEECC----CCCEEEeCCCCCeEEEECCCCc------------------EE
Confidence 3567778766 321111 1122446789999999 8888888777889999997631 00
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
...+......+.++++.|++. ++++...++.|.+||.. ... ....... ....
T Consensus 91 -~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~~-g~~--~~~~~~~----------------------~~~~ 142 (299)
T 2z2n_A 91 -EYTLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITDD-GKI--REYELPN----------------------KGSY 142 (299)
T ss_dssp -EEECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTT-CCE--EEEECSS----------------------TTCC
T ss_pred -EEeCCCcCCCceeeEECCCCC--EEEEecCCceEEEECCC-CCE--EEecCCC----------------------CCCC
Confidence 011112345688999999887 77777778899999862 211 1000000 0012
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEE-eecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMV-FKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
+..+++++++..+++...++.|..||. +++.... +......+.+++++++++++++...++.|.+||. +++... +.
T Consensus 143 ~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~ 219 (299)
T 2z2n_A 143 PSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FK 219 (299)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EE
T ss_pred CceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EE
Confidence 678999999987777777789999998 6665442 3334456889999999998888777899999998 666443 31
Q ss_pred CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
. ..+...+.+++++++|+++++...++.|..||
T Consensus 220 ~------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d 252 (299)
T 2z2n_A 220 I------PTPNARPHAITAGAGIDLWFTEWGANKIGRLT 252 (299)
T ss_dssp C------SSTTCCEEEEEECSTTCEEEEETTTTEEEEEE
T ss_pred C------CCCCCCceeEEECCCCCEEEeccCCceEEEEC
Confidence 1 23445688999999999777776777777764
No 188
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.66 E-value=9.2e-15 Score=114.82 Aligned_cols=62 Identities=11% Similarity=0.193 Sum_probs=49.1
Q ss_pred EEEcCCCcEEEEecC-----------CCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceE
Q 023643 207 IVARNSTNQIVTGSE-----------DGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYV 275 (279)
Q Consensus 207 i~~~~~~~~l~~~~~-----------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 275 (279)
++|+|+++.++++.. .+.|.+||+.+++.+..+ ..+. ..+++|+|+|++|++++. +.|
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i--------~~~~--p~~ia~spdg~~l~v~n~-~~v 327 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARI--------PGRD--ALSMTIDQQRNLMLTLDG-GNV 327 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEE--------ECTT--CCEEEEETTTTEEEEECS-SCE
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEE--------ecCC--eeEEEECCCCCEEEEeCC-CeE
Confidence 567777666655432 347999999999998888 3444 889999999999999887 999
Q ss_pred EeCC
Q 023643 276 ILFS 279 (279)
Q Consensus 276 ~~wd 279 (279)
.+||
T Consensus 328 ~v~D 331 (361)
T 2oiz_A 328 NVYD 331 (361)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9996
No 189
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.65 E-value=5.3e-14 Score=105.96 Aligned_cols=194 Identities=13% Similarity=0.059 Sum_probs=132.7
Q ss_pred ceEEEEECCCCCCCCCEEE-EecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643 27 TVFRTVWGPSKDGSPDTIV-IASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA 105 (279)
Q Consensus 27 ~v~~~~~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 105 (279)
...++++++ ++++++ +...++.|.+|+..+.. .......+...+.++++.+++.
T Consensus 25 ~p~~i~~~~----~g~l~v~~~~~~~~i~~~~~~~~~-------------------~~~~~~~~~~~p~~i~~~~~g~-- 79 (270)
T 1rwi_B 25 SPSGVAVDS----AGNVYVTSEGMYGRVVKLATGSTG-------------------TTVLPFNGLYQPQGLAVDGAGT-- 79 (270)
T ss_dssp CEEEEEECT----TCCEEEEECSSSCEEEEECC------------------------EECCCCSCCSCCCEEECTTCC--
T ss_pred CccceEECC----CCCEEEEccCCCCcEEEecCCCcc-------------------cceEeeCCcCCcceeEECCCCC--
Confidence 678899999 888777 55778899999976521 1111112334577899999886
Q ss_pred EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEE
Q 023643 106 LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYC 185 (279)
Q Consensus 106 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 185 (279)
++++.. ++.|.+||.+.... ....... ...+..++++|++.++++...++.|.+
T Consensus 80 l~v~~~-~~~i~~~d~~~~~~----~~~~~~~---------------------~~~p~~i~~~~~g~l~v~~~~~~~i~~ 133 (270)
T 1rwi_B 80 VYVTDF-NNRVVTLAAGSNNQ----TVLPFDG---------------------LNYPEGLAVDTQGAVYVADRGNNRVVK 133 (270)
T ss_dssp EEEEET-TTEEEEECTTCSCC----EECCCCS---------------------CSSEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred EEEEcC-CCEEEEEeCCCceE----eeeecCC---------------------cCCCcceEECCCCCEEEEECCCCEEEE
Confidence 666665 88999999653211 1111000 012578999999987777677889999
Q ss_pred EecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCE
Q 023643 186 WDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESW 265 (279)
Q Consensus 186 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 265 (279)
|+..+.............+.+++++++++++++...++.|.+||.......... ..+...+.+++++++|.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~--------~~~~~~p~~i~~d~~g~l 205 (270)
T 1rwi_B 134 LAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP--------FTDITAPWGIAVDEAGTV 205 (270)
T ss_dssp ECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC--------CSSCCSEEEEEECTTCCE
T ss_pred EECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeec--------ccCCCCceEEEECCCCCE
Confidence 987655443332233346788999999998888878899999998766544322 122256789999999988
Q ss_pred EEEEcCcceEEeCC
Q 023643 266 LVRVRATNYVILFS 279 (279)
Q Consensus 266 l~~~~~d~~i~~wd 279 (279)
+++...++.|.+||
T Consensus 206 ~v~~~~~~~v~~~~ 219 (270)
T 1rwi_B 206 YVTEHNTNQVVKLL 219 (270)
T ss_dssp EEEETTTSCEEEEC
T ss_pred EEEECCCCcEEEEc
Confidence 88887788888875
No 190
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.65 E-value=1.1e-15 Score=121.49 Aligned_cols=212 Identities=8% Similarity=0.002 Sum_probs=128.7
Q ss_pred eEEEEECCCCCCCCCEEEEecCC---CcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643 28 VFRTVWGPSKDGSPDTIVIASSD---GSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED 104 (279)
Q Consensus 28 v~~~~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 104 (279)
+..++|+| +|++|+..... ..|.+|++.++ +......++......+.|+|+++
T Consensus 38 ~~~~~~Sp----dG~~l~~~~~~~g~~~l~~~d~~~~-------------------~~~~l~~~~~~~~~~~~~spdg~- 93 (396)
T 3c5m_A 38 FYQKCFTQ----DGKKLLFAGDFDGNRNYYLLNLETQ-------------------QAVQLTEGKGDNTFGGFISTDER- 93 (396)
T ss_dssp TTSCCBCT----TSCEEEEEECTTSSCEEEEEETTTT-------------------EEEECCCSSCBCTTTCEECTTSS-
T ss_pred eecCcCCC----CCCEEEEEEecCCCceEEEEECCCC-------------------cEEEeecCCCCccccceECCCCC-
Confidence 67789999 89998776443 36888888763 22222222222233478999998
Q ss_pred eEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe-----cC
Q 023643 105 ALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA-----AG 179 (279)
Q Consensus 105 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-----~~ 179 (279)
+|+.++.++.|++|++...... ............-..+.......... .....+.|+|+++.++.+ ..
T Consensus 94 -~l~~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~-----~~~~~~~~spdg~~~~~~~~~~~~~ 166 (396)
T 3c5m_A 94 -AFFYVKNELNLMKVDLETLEEQ-VIYTVDEEWKGYGTWVANSDCTKLVG-----IEILKRDWQPLTSWEKFAEFYHTNP 166 (396)
T ss_dssp -EEEEEETTTEEEEEETTTCCEE-EEEECCTTEEEEEEEEECTTSSEEEE-----EEEEGGGCCCCCSHHHHHHHHHTCC
T ss_pred -EEEEEEcCCcEEEEECCCCCcE-EEEecccccCCCCCEEEeccCCcccc-----ccccccccCCCCcceeeeeeccCCC
Confidence 9999999999999998653211 11111111000000000000000000 000113578888877654 45
Q ss_pred CCeEEEEecCCCcEEEEeecCCcceEEEEEcC-CCcEEEEecCC------CeEEEEeCCCCceEEEecCCccccccC-cc
Q 023643 180 DSCAYCWDVESSRIKMVFKGHSDYLHCIVARN-STNQIVTGSED------GTARIWDCKSGKCIKVIDPVKDKQLKG-VI 251 (279)
Q Consensus 180 d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~-~~ 251 (279)
+..|++||+.+++..... .+...+..+.|+| +++.|+..+.+ ..|.+||+..++..... .. ..
T Consensus 167 ~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~--------~~~~~ 237 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK--------EHAEG 237 (396)
T ss_dssp CEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS--------CCCTT
T ss_pred cceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEee--------ccCCC
Confidence 678999999988766555 4667789999999 78877665543 46888998765543322 11 13
Q ss_pred eeeeEEEEcCCCCEEEEEcCc-----ceEEeCC
Q 023643 252 SCVSCITLDASESWLVRVRAT-----NYVILFS 279 (279)
Q Consensus 252 ~~v~~~~~~~~~~~l~~~~~d-----~~i~~wd 279 (279)
..+..++|+|+|++|+.++.+ +.|++||
T Consensus 238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 270 (396)
T 3c5m_A 238 ESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKAN 270 (396)
T ss_dssp EEEEEEEECTTSSCEEEEEEETTTCCEEEEEEC
T ss_pred ccccceEECCCCCEEEEEecCCCCccceEEEEE
Confidence 467889999999988877554 4588886
No 191
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.65 E-value=5.7e-14 Score=120.09 Aligned_cols=221 Identities=9% Similarity=-0.023 Sum_probs=142.6
Q ss_pred ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCc----------------EEEEeCCCCCccccc
Q 023643 4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGS----------------ITSYSIPSCISKLPL 67 (279)
Q Consensus 4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~----------------i~iw~~~~~~~~~~~ 67 (279)
.|++||+++++. +.... ....+..++|+| |++.|+.++.++. |++|++.+.....
T Consensus 152 ~i~v~d~~tg~~--~~~~~-~~~~~~~~~wsp----Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~-- 222 (710)
T 2xdw_A 152 TIKFMKVDGAKE--LPDVL-ERVKFSCMAWTH----DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-- 222 (710)
T ss_dssp EEEEEETTTTEE--EEEEE-EEECSCCEEECT----TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC--
T ss_pred EEEEEECCCCCC--Ccccc-cCcccceEEEEe----CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccc--
Confidence 789999988753 22111 222367899999 9999999887766 9999998742100
Q ss_pred ccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeC-----CCcEEEeecCCCc----cCcceeeeccCcc
Q 023643 68 GLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGD-----DGRICGWRWKEFT----ESKVPINLQGNHV 138 (279)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iw~~~~~~----~~~~~~~~~~~~~ 138 (279)
..+.....|...+..+.|+|+++ +|+..+. +..|.+||+.... .......+..+..
T Consensus 223 -------------~~v~~~~~~~~~~~~~~~SpDg~--~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~ 287 (710)
T 2xdw_A 223 -------------ILCAEFPDEPKWMGGAELSDDGR--YVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFE 287 (710)
T ss_dssp -------------EEEECCTTCTTCEEEEEECTTSC--EEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSS
T ss_pred -------------eEEeccCCCCeEEEEEEEcCCCC--EEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCC
Confidence 01112223556688999999998 7776654 5689999986410 0001111111110
Q ss_pred cceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCC----CeEEEEecCCCcE--EEEeecCCc--ceEEEEEc
Q 023643 139 KPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD----SCAYCWDVESSRI--KMVFKGHSD--YLHCIVAR 210 (279)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~--~~~~~~~~~--~i~~i~~~ 210 (279)
.+.. .|+|++..|+..+.. +.|.+||+.++.. ...+..|.. .+..++|+
T Consensus 288 ----------------------~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~ 344 (710)
T 2xdw_A 288 ----------------------GEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV 344 (710)
T ss_dssp ----------------------SCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEE
T ss_pred ----------------------cEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEE
Confidence 1222 478888877766543 4699999987642 234444433 68889998
Q ss_pred CCCcEEEEecCCCe--EEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEE-c---CcceEEeCC
Q 023643 211 NSTNQIVTGSEDGT--ARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV-R---ATNYVILFS 279 (279)
Q Consensus 211 ~~~~~l~~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~---~d~~i~~wd 279 (279)
+++.++++...++. |.+||+.+++.+..+ ..+...+..++++|++..++.. + ..+.+.+||
T Consensus 345 ~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l--------~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 345 RSNFLVLCYLHDVKNTLQLHDLATGALLKIF--------PLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411 (710)
T ss_dssp TTTEEEEEEEETTEEEEEEEETTTCCEEEEE--------CCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred cCCEEEEEEEECCEEEEEEEECCCCCEEEec--------CCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 88888888888885 666787778877777 3446678889999998766533 2 245676664
No 192
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.64 E-value=2.6e-13 Score=104.48 Aligned_cols=220 Identities=11% Similarity=0.046 Sum_probs=137.6
Q ss_pred CCceeeeccccccccceee--eeecccceEEEEECCCCCCC-CCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643 2 CGDSTNWDEDAYRKSILKE--REILTRTVFRTVWGPSKDGS-PDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL 78 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 78 (279)
+|.|..||.++.+...+.. ..++...+.++++++ + ++++++... +.|.+|+.. +......
T Consensus 45 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~----~~g~l~v~~~~-~~l~~~d~~-g~~~~~~----------- 107 (314)
T 1pjx_A 45 AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR----DANQLFVADMR-LGLLVVQTD-GTFEEIA----------- 107 (314)
T ss_dssp CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS----SSSEEEEEETT-TEEEEEETT-SCEEECC-----------
T ss_pred CCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec----CCCcEEEEECC-CCEEEEeCC-CCEEEEE-----------
Confidence 4678888876554321111 012446789999999 7 666665544 478889887 3211000
Q ss_pred ecccccccc-CCccCeEEEEecCCCCceEEEEeeCC---------------CcEEEeecCCCccCcceeeeccCcccceE
Q 023643 79 GIEPDGFLH-GHDGPAYDVKFYGGNEDALLLSCGDD---------------GRICGWRWKEFTESKVPINLQGNHVKPVL 142 (279)
Q Consensus 79 ~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d---------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 142 (279)
..... .....+.++++.+++. ++++...+ +.|..++.+ . ... ......
T Consensus 108 ----~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g---~~~-~~~~~~----- 171 (314)
T 1pjx_A 108 ----KKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G---QMI-QVDTAF----- 171 (314)
T ss_dssp ----SBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S---CEE-EEEEEE-----
T ss_pred ----eccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCeEEEECCC-C---CEE-EeccCC-----
Confidence 00001 1224578999999987 66666554 455555532 1 111 110000
Q ss_pred EeecCCCCCccccCCCCCCceeEEEc----CCCCeEEEe-cCCCeEEEEecC-CCc-----EEEEeecCC-cceEEEEEc
Q 023643 143 DLVNHQHKGPWGALSPVPENNAIAVD----PQGGAIFSA-AGDSCAYCWDVE-SSR-----IKMVFKGHS-DYLHCIVAR 210 (279)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~-~~d~~i~i~d~~-~~~-----~~~~~~~~~-~~i~~i~~~ 210 (279)
.....++++ |+++.++++ ..++.|.+||+. +++ ....+..+. ..+..++++
T Consensus 172 -----------------~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d 234 (314)
T 1pjx_A 172 -----------------QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD 234 (314)
T ss_dssp -----------------SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred -----------------CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC
Confidence 014678899 998766554 567899999986 443 222333343 567899999
Q ss_pred CCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEE-EEEcCcceEEeCC
Q 023643 211 NSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWL-VRVRATNYVILFS 279 (279)
Q Consensus 211 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~wd 279 (279)
++|+++++...++.|.+||..+++.+..+ ..+...+.+++|+|+++.| ++...++.|..|+
T Consensus 235 ~~G~l~v~~~~~~~i~~~d~~~g~~~~~~--------~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 235 EDNNLLVANWGSSHIEVFGPDGGQPKMRI--------RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp TTCCEEEEEETTTEEEEECTTCBSCSEEE--------ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEcCCCEEEEEcCCCCcEeEEE--------eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 99998888878899999999877776666 3344578999999999955 4555567776653
No 193
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.64 E-value=7.3e-14 Score=119.11 Aligned_cols=198 Identities=7% Similarity=-0.105 Sum_probs=130.3
Q ss_pred ecccceEEEEECCCCCCCCCEEE-----EecCCCcEEEEeCCCCCcccccccCCcccceeeecccc-c-cccCCccCeEE
Q 023643 23 ILTRTVFRTVWGPSKDGSPDTIV-----IASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPD-G-FLHGHDGPAYD 95 (279)
Q Consensus 23 ~~~~~v~~~~~~~~~~~~~~~l~-----~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~h~~~v~~ 95 (279)
+|...+..++||| ||++|| .|+.+.+|++||+.++ +.+ . .+... ....
T Consensus 118 ~~~~~~~~~~~SP----DG~~la~~~~~~G~~~~~i~v~dl~tg-------------------~~~~~~~~~~~--~~~~ 172 (695)
T 2bkl_A 118 DGTVSLGTWAVSW----DGKKVAFAQKPNAADEAVLHVIDVDSG-------------------EWSKVDVIEGG--KYAT 172 (695)
T ss_dssp SSCEEEEEEEECT----TSSEEEEEEEETTCSCCEEEEEETTTC-------------------CBCSSCCBSCC--TTCC
T ss_pred CCCEEEEEEEECC----CCCEEEEEECCCCCceEEEEEEECCCC-------------------CCcCCcccCcc--cccc
Confidence 3455789999999 999998 4455678999999984 222 1 11111 1257
Q ss_pred EEecCCCCceEEEEeeCCCc-------------EEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCc
Q 023643 96 VKFYGGNEDALLLSCGDDGR-------------ICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPEN 162 (279)
Q Consensus 96 ~~~~~~~~~~~l~s~~~dg~-------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 162 (279)
++|+|+++ .|+.++.|.. |++|++.+...... ....... + ...+
T Consensus 173 ~~wspDg~--~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~-lv~~~~~-----------~---------~~~~ 229 (695)
T 2bkl_A 173 PKWTPDSK--GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDT-VVHERTG-----------D---------PTTF 229 (695)
T ss_dssp CEECTTSS--EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCE-EEECCCC-----------C---------TTCE
T ss_pred eEEecCCC--EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhce-EEEecCC-----------C---------CEEE
Confidence 89999998 8888888776 99999865422111 1111100 0 0125
Q ss_pred eeEEEcCCCCeEEEecCCC----eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEec---CCCeEEEEeCCCCce
Q 023643 163 NAIAVDPQGGAIFSAAGDS----CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS---EDGTARIWDCKSGKC 235 (279)
Q Consensus 163 ~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~d~~i~vwd~~~~~~ 235 (279)
..+.|+|+|++|+.++.++ .|.++|..+++... +..+...+....+ +++.+++... .++.|.+||+.+++.
T Consensus 230 ~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~ 307 (695)
T 2bkl_A 230 LQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRL-LVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPAR 307 (695)
T ss_dssp EEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEE-EEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSG
T ss_pred EEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEE-eecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCc
Confidence 7889999999988877655 78888776565433 4445555566666 5666544444 368899999987753
Q ss_pred ---EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 236 ---IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 236 ---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
...+. ......+..++|+ ++.++++...|+..++|
T Consensus 308 ~~~~~l~~-------~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 308 ASWKEIVP-------EDSSASLLSVSIV-GGHLSLEYLKDATSEVR 345 (695)
T ss_dssp GGCEEEEC-------CCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred cCCeEEec-------CCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 33331 1124567888888 67888888889988876
No 194
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.62 E-value=5.9e-14 Score=109.64 Aligned_cols=197 Identities=10% Similarity=0.060 Sum_probs=126.8
Q ss_pred eeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCC---------------------------CcEEEEe
Q 023643 5 STNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSD---------------------------GSITSYS 57 (279)
Q Consensus 5 v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d---------------------------g~i~iw~ 57 (279)
|.+|++++..... +..+.. +..++|+| +++.|+.++.+ ..|.+|+
T Consensus 87 l~~~~~~~g~~~~---l~~~~~-~~~~~wsp----dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d 158 (347)
T 2gop_A 87 IWVADLETLSSKK---ILEAKN-IRSLEWNE----DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFD 158 (347)
T ss_dssp EEEEETTTTEEEE---EEEESE-EEEEEECT----TSSEEEEEEECCCC---------CCCC---------CEEEEEEEE
T ss_pred EEEEECCCCceEE---EEcCCC-ccceeECC----CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEE
Confidence 6666776654222 222234 99999999 89988887632 5688888
Q ss_pred CCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCC-------cEEEeecCCCccCcce
Q 023643 58 IPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDG-------RICGWRWKEFTESKVP 130 (279)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-------~i~iw~~~~~~~~~~~ 130 (279)
+.++ +.+..+.. . .+..+.|+|++ +++++..++ ...+|.++.. . .
T Consensus 159 ~~~~-------------------~~~~~l~~-~-~~~~~~~spdg---~~~~~~~~~~~~~~~~~~~l~~~d~~---~-~ 210 (347)
T 2gop_A 159 TESE-------------------EVIEEFEK-P-RFSSGIWHRDK---IVVNVPHREIIPQYFKFWDIYIWEDG---K-E 210 (347)
T ss_dssp TTTT-------------------EEEEEEEE-E-TTCEEEEETTE---EEEEEECCCSSCCSSCCEEEEEEETT---E-E
T ss_pred CCCC-------------------eEEeeecC-C-CcccccCCCCe---EEEEEecccccccccccccEEEeCCC---c-e
Confidence 8763 22122222 2 67889999987 566665542 4556655411 1 1
Q ss_pred eeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCC--------CeEEEEecCCCcEEEEeecCCc
Q 023643 131 INLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD--------SCAYCWDVESSRIKMVFKGHSD 202 (279)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~ 202 (279)
..+..+ . .+..+ +|+|+.|+.++.+ ..|.+|| +++.......+..
T Consensus 211 ~~l~~~--~---------------------~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~ 263 (347)
T 2gop_A 211 EKMFEK--V---------------------SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR 263 (347)
T ss_dssp EEEEEE--E---------------------SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS
T ss_pred EEeccC--c---------------------ceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc
Confidence 111110 0 12333 8999988776643 4688888 6666555556677
Q ss_pred ceEE-EEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceE-EeC
Q 023643 203 YLHC-IVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYV-ILF 278 (279)
Q Consensus 203 ~i~~-i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i-~~w 278 (279)
.+.. +.|+ ++ ++++++.++.++|| +.+++....+ .+...|.+++|+| .++++++.++.. .+|
T Consensus 264 ~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~---------~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 264 GVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA---------KGRHWIMGFDVDE--IVVYLKETATRLRELF 327 (347)
T ss_dssp EEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE---------CSSSEEEEEEESS--SEEEEEECSSSCCEEE
T ss_pred ccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe---------cCCCeEEeeeeeC--cEEEEEcCCCChHHhe
Confidence 8886 8999 88 88999999999999 8766654433 3356789999999 667777666543 444
No 195
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.59 E-value=6.3e-14 Score=119.48 Aligned_cols=218 Identities=12% Similarity=-0.024 Sum_probs=135.2
Q ss_pred CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCc-------------EEEEeCCCCCccccccc
Q 023643 3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGS-------------ITSYSIPSCISKLPLGL 69 (279)
Q Consensus 3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~-------------i~iw~~~~~~~~~~~~~ 69 (279)
.+|++||+++++......+. ......++|+| |++.|+.++.|.. |++|++.+....
T Consensus 147 ~~i~v~dl~tg~~~~~~~~~--~~~~~~~~wsp----Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~----- 215 (695)
T 2bkl_A 147 AVLHVIDVDSGEWSKVDVIE--GGKYATPKWTP----DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK----- 215 (695)
T ss_dssp CEEEEEETTTCCBCSSCCBS--CCTTCCCEECT----TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG-----
T ss_pred EEEEEEECCCCCCcCCcccC--cccccceEEec----CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchh-----
Confidence 47999999887531011111 11126789999 9999999988776 999999874211
Q ss_pred CCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCC----cEEEeecCCCccCcceeeeccCcccceEEee
Q 023643 70 SNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDG----RICGWRWKEFTESKVPINLQGNHVKPVLDLV 145 (279)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (279)
...+.....|...+..+.|+|+++ +|+..+.++ .|.+|+.... . ...+..+..
T Consensus 216 ----------~~lv~~~~~~~~~~~~~~~SpDG~--~l~~~~~~~~~~~~l~~~~~~~~---~-~~~l~~~~~------- 272 (695)
T 2bkl_A 216 ----------DTVVHERTGDPTTFLQSDLSRDGK--YLFVYILRGWSENDVYWKRPGEK---D-FRLLVKGVG------- 272 (695)
T ss_dssp ----------CEEEECCCCCTTCEEEEEECTTSC--CEEEEEEETTTEEEEEEECTTCS---S-CEEEEECSS-------
T ss_pred ----------ceEEEecCCCCEEEEEEEECCCCC--EEEEEEeCCCCceEEEEEcCCCC---c-eEEeecCCC-------
Confidence 011222334556788999999998 777666555 5555543211 1 111111110
Q ss_pred cCCCCCccccCCCCCCceeEEEcCCCCeEEEecC----CCeEEEEecCCCcE---EEEeecC-CcceEEEEEcCCCcEEE
Q 023643 146 NHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG----DSCAYCWDVESSRI---KMVFKGH-SDYLHCIVARNSTNQIV 217 (279)
Q Consensus 146 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~---~~~~~~~-~~~i~~i~~~~~~~~l~ 217 (279)
.+....+ +++. ++..+. ++.|.+||+.+++. ...+..+ ...+..++++ ++.+++
T Consensus 273 ---------------~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~ 334 (695)
T 2bkl_A 273 ---------------AKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSL 334 (695)
T ss_dssp ---------------CCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEE
T ss_pred ---------------ceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEE
Confidence 1234445 5566 544443 58899999987653 3333333 4567888887 678888
Q ss_pred EecCCCeEEEEeCC-CCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEE----cCcceEEeCC
Q 023643 218 TGSEDGTARIWDCK-SGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV----RATNYVILFS 279 (279)
Q Consensus 218 ~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~d~~i~~wd 279 (279)
+...|+..+||.+. .++....+.. .....+..++++|++..++.. ...+.|++||
T Consensus 335 ~~~~dg~~~l~~~~~~g~~~~~l~~-------~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d 394 (695)
T 2bkl_A 335 EYLKDATSEVRVATLKGKPVRTVQL-------PGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTS 394 (695)
T ss_dssp EEEETTEEEEEEEETTCCEEEECCC-------SSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEE
T ss_pred EEEECCEEEEEEEeCCCCeeEEecC-------CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence 99999998888654 4655555531 124567788899998777633 2346777774
No 196
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.59 E-value=2.3e-12 Score=98.48 Aligned_cols=207 Identities=8% Similarity=0.005 Sum_probs=132.6
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
++.|..||.++... ..+ .....+.+++++| +++++++. ++.|.+||..++...
T Consensus 34 ~~~i~~~d~~~~~~---~~~-~~~~~~~~i~~~~----dG~l~v~~--~~~l~~~d~~~g~~~----------------- 86 (297)
T 3g4e_A 34 AKKVCRWDSFTKQV---QRV-TMDAPVSSVALRQ----SGGYVATI--GTKFCALNWKEQSAV----------------- 86 (297)
T ss_dssp TTEEEEEETTTCCE---EEE-ECSSCEEEEEEBT----TSSEEEEE--TTEEEEEETTTTEEE-----------------
T ss_pred CCEEEEEECCCCcE---EEE-eCCCceEEEEECC----CCCEEEEE--CCeEEEEECCCCcEE-----------------
Confidence 35677777766432 222 2346799999999 88866554 567999998763211
Q ss_pred cccccc--CCccCeEEEEecCCCCceEEEEeeCC---------CcEEEeecCCCccCcceeeeccCcccceEEeecCCCC
Q 023643 82 PDGFLH--GHDGPAYDVKFYGGNEDALLLSCGDD---------GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHK 150 (279)
Q Consensus 82 ~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (279)
.+.... .....++.+++.|++. ++++.... ..-.+|.++... ........ .
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g--~~~~~~~~-~------------- 148 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDH--HVKKYFDQ-V------------- 148 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTS--CEEEEEEE-E-------------
T ss_pred EEEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCC--CEEEEeec-c-------------
Confidence 111111 1224578899999987 66554322 234555553211 11110000 0
Q ss_pred CccccCCCCCCceeEEEcCCCCeEE-EecCCCeEEEEec--CCCcEE-----EEeecCCcceEEEEEcCCCcEEEEecCC
Q 023643 151 GPWGALSPVPENNAIAVDPQGGAIF-SAAGDSCAYCWDV--ESSRIK-----MVFKGHSDYLHCIVARNSTNQIVTGSED 222 (279)
Q Consensus 151 ~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~--~~~~~~-----~~~~~~~~~i~~i~~~~~~~~l~~~~~d 222 (279)
...+.++|+|+++.|+ +.+.++.|.+||+ .++... ..+..+...+..++++++|++.++....
T Consensus 149 ---------~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~ 219 (297)
T 3g4e_A 149 ---------DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG 219 (297)
T ss_dssp ---------SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT
T ss_pred ---------ccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC
Confidence 0147899999998665 4556789999987 455432 2233344678899999999988888788
Q ss_pred CeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEc-CCCCEEEEEc
Q 023643 223 GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLD-ASESWLVRVR 270 (279)
Q Consensus 223 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 270 (279)
+.|.+||..+++.+..+. .+...+++++|. |+++.|+.++
T Consensus 220 ~~v~~~d~~tG~~~~~i~--------~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVK--------LPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp TEEEEECTTTCCEEEEEE--------CSSSBEEEEEEESGGGCEEEEEE
T ss_pred CEEEEEcCCCceEEEEEE--------CCCCCceEEEEeCCCCCEEEEEc
Confidence 899999999899988883 444578999998 8877665544
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.58 E-value=9.7e-12 Score=94.82 Aligned_cols=197 Identities=11% Similarity=0.038 Sum_probs=138.2
Q ss_pred cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643 24 LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE 103 (279)
Q Consensus 24 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 103 (279)
+...+.++++.+ ++.++++...++.|.+|+.. ... . ......+...+.++++.+++.
T Consensus 13 ~~~~~~~i~~d~----~g~l~v~~~~~~~v~~~d~~-~~~-----------------~-~~~~~~~~~~~~~i~~~~~g~ 69 (299)
T 2z2n_A 13 QDTGPYGITVSD----KGKVWITQHKANMISCINLD-GKI-----------------T-EYPLPTPDAKVMCLTISSDGE 69 (299)
T ss_dssp SSCCEEEEEECT----TSCEEEEETTTTEEEEECTT-CCE-----------------E-EEECSSTTCCEEEEEECTTSC
T ss_pred cCCCccceEECC----CCCEEEEecCCCcEEEEcCC-CCe-----------------E-EecCCcccCceeeEEECCCCC
Confidence 446789999999 89988877778899999987 311 0 011112345688999999987
Q ss_pred ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeE
Q 023643 104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCA 183 (279)
Q Consensus 104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 183 (279)
++++...++.|..|+.+. . ........ ....+..+++++++.++++...++.|
T Consensus 70 --l~v~~~~~~~i~~~~~~g-~--~~~~~~~~----------------------~~~~~~~i~~~~~g~l~v~~~~~~~i 122 (299)
T 2z2n_A 70 --VWFTENAANKIGRITKKG-I--IKEYTLPN----------------------PDSAPYGITEGPNGDIWFTEMNGNRI 122 (299)
T ss_dssp --EEEEETTTTEEEEECTTS-C--EEEEECSS----------------------TTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred --EEEeCCCCCeEEEECCCC-c--EEEEeCCC----------------------cCCCceeeEECCCCCEEEEecCCceE
Confidence 777777788899998641 1 11111000 01136789999999877777778899
Q ss_pred EEEecCCCcEEEE-eecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCC
Q 023643 184 YCWDVESSRIKMV-FKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS 262 (279)
Q Consensus 184 ~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 262 (279)
..||. +++.... .......+..++++++++.+++...++.|..||. +++...... ......+.+++++++
T Consensus 123 ~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~-------~~~~~~~~~i~~~~~ 193 (299)
T 2z2n_A 123 GRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKI-------PTPASGPVGITKGND 193 (299)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEEC-------SSTTCCEEEEEECTT
T ss_pred EEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeC-------CCCCCcceeEEECCC
Confidence 99998 5554432 2234467899999999998888888899999998 666544311 223345789999999
Q ss_pred CCEEEEEcCcceEEeCC
Q 023643 263 ESWLVRVRATNYVILFS 279 (279)
Q Consensus 263 ~~~l~~~~~d~~i~~wd 279 (279)
+.++++...++.|.+||
T Consensus 194 g~l~v~~~~~~~i~~~~ 210 (299)
T 2z2n_A 194 DALWFVEIIGNKIGRIT 210 (299)
T ss_dssp SSEEEEETTTTEEEEEC
T ss_pred CCEEEEccCCceEEEEC
Confidence 99888877778888775
No 198
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.57 E-value=1.8e-11 Score=93.42 Aligned_cols=217 Identities=10% Similarity=-0.031 Sum_probs=144.1
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
+|.|.+||.+ ..... .........+.++++.+ ++.++++...++.|..||.. +..
T Consensus 40 ~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~----~g~l~v~~~~~~~v~~~d~~-g~~------------------ 94 (300)
T 2qc5_A 40 ANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSS----LGDIWFTENGANKIGKLSKK-GGF------------------ 94 (300)
T ss_dssp TTEEEEECTT-SCEEE-EECSSTTCCEEEEEECT----TSCEEEEETTTTEEEEECTT-SCE------------------
T ss_pred CCeEEEECCC-CceEE-EECCCCCCcceeEEECC----CCCEEEEecCCCeEEEECCC-CCe------------------
Confidence 3567777766 32111 11222346788999999 88888887778889999977 311
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
....+......+.++++.+++. ++++...++.|..++.+ ... ....... ....
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~--~~~~~~~----------------------~~~~ 147 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTI--YEYDLPN----------------------KGSY 147 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCE--EEEECSS----------------------TTCC
T ss_pred EEecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCE--EEccCCC----------------------CCCC
Confidence 0011112235688999999887 77777768889999864 211 0011110 0012
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEE-eecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMV-FKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
+..++++++++++++...++.|..+|. +++.... ...+...+.+++++++++.+++....+.|.+||. +++......
T Consensus 148 ~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~ 225 (300)
T 2qc5_A 148 PAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDI 225 (300)
T ss_dssp EEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEEC
T ss_pred ceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEEC
Confidence 578999999986666666789999998 5554432 2234456899999999988888777888999998 555443321
Q ss_pred CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
......+.+++++++|+++++...++.|..||
T Consensus 226 -------~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 226 -------PTPNARPHAITAGKNSEIWFTEWGANQIGRIT 257 (300)
T ss_dssp -------SSTTCCEEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred -------CCCCCCceEEEECCCCCEEEeccCCCeEEEEC
Confidence 23345678999999999777776777887764
No 199
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.55 E-value=3.9e-12 Score=101.45 Aligned_cols=230 Identities=11% Similarity=0.004 Sum_probs=138.9
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCC--cEEEEeCCCCCcccccccCCcccceeee
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDG--SITSYSIPSCISKLPLGLSNSKVQQLLG 79 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 79 (279)
++.|+.||+++.... .+........ ++|+| +++.|+++..++ .|.+++.......
T Consensus 151 ~~~I~~id~~~g~~~---~~~~~~~~~~-ia~~~----~g~~l~~~d~~~~~~I~~~d~~~~~~~--------------- 207 (409)
T 3hrp_A 151 DPRVRLISVDDNKVT---TVHPGFKGGK-PAVTK----DKQRVYSIGWEGTHTVYVYMKASGWAP--------------- 207 (409)
T ss_dssp TTEEEEEETTTTEEE---EEEETCCBCB-CEECT----TSSEEEEEBSSTTCEEEEEEGGGTTCE---------------
T ss_pred CCcEEEEECCCCEEE---EeeccCCCCc-eeEec----CCCcEEEEecCCCceEEEEEcCCCcee---------------
Confidence 357888887764322 2221222333 89999 888888888766 6888887642110
Q ss_pred ccccccc-cCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643 80 IEPDGFL-HGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP 158 (279)
Q Consensus 80 ~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (279)
..+..+ ......+.+++++|++. .|+.+..++.|+.||+.... ...+.... ...... +
T Consensus 208 -~~~g~~~~~~~~~p~~iav~p~~g--~lyv~d~~~~I~~~d~~~~~----~~~~~~~~--------~~g~~~-~----- 266 (409)
T 3hrp_A 208 -TRIGQLGSTFSGKIGAVALDETEE--WLYFVDSNKNFGRFNVKTQE----VTLIKQLE--------LSGSLG-T----- 266 (409)
T ss_dssp -EEEEECCTTSCSCCCBCEECTTSS--EEEEECTTCEEEEEETTTCC----EEEEEECC--------CCSCCC-C-----
T ss_pred -EEeeeccchhcCCcEEEEEeCCCC--eEEEEECCCcEEEEECCCCC----EEEEeccc--------ccCCCC-C-----
Confidence 000011 11335577899999544 55557778899999976431 11110000 000000 0
Q ss_pred CCCceeEEEcCC-CCeEEEecCCCeEEEEecCCCcEEEEeecCC---------------cceEEEEEcCCCcEEEEec-C
Q 023643 159 VPENNAIAVDPQ-GGAIFSAAGDSCAYCWDVESSRIKMVFKGHS---------------DYLHCIVARNSTNQIVTGS-E 221 (279)
Q Consensus 159 ~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------------~~i~~i~~~~~~~~l~~~~-~ 221 (279)
.+...++|+|+ +.++++-..++.|+.|+.... +..+.++. .....++++|+|+++++-+ .
T Consensus 267 -~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~ 343 (409)
T 3hrp_A 267 -NPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK 343 (409)
T ss_dssp -SSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT
T ss_pred -CccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC
Confidence 00128999995 555555667889999997643 33333322 3478999999999888888 8
Q ss_pred CCeEEEEeCCCCceEEEecCCccc------cccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 222 DGTARIWDCKSGKCIKVIDPVKDK------QLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 222 d~~i~vwd~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
++.|+.|++.+++.....-..... .....-.....+++++++.++++-..++.|+.+
T Consensus 344 ~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 344 GYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp TCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred CCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence 999999998777654332110000 000112457899999999888888888888764
No 200
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.54 E-value=2e-11 Score=100.92 Aligned_cols=229 Identities=12% Similarity=0.065 Sum_probs=144.9
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCC--CCCcccccccCCcccceeee
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIP--SCISKLPLGLSNSKVQQLLG 79 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~ 79 (279)
+|.|.++|.++.+ .+..+.. ...+..+.|+| +++++++++.|+.|.+||+. +
T Consensus 176 ~~~V~viD~~t~~--v~~~i~~-g~~p~~v~~Sp----DGr~lyv~~~dg~V~viD~~~~t------------------- 229 (567)
T 1qks_A 176 AGQIALIDGSTYE--IKTVLDT-GYAVHISRLSA----SGRYLFVIGRDGKVNMIDLWMKE------------------- 229 (567)
T ss_dssp TTEEEEEETTTCC--EEEEEEC-SSCEEEEEECT----TSCEEEEEETTSEEEEEETTSSS-------------------
T ss_pred CCeEEEEECCCCe--EEEEEeC-CCCccceEECC----CCCEEEEEcCCCeEEEEECCCCC-------------------
Confidence 6789999988764 3444442 33566899999 99999999999999999995 4
Q ss_pred ccccccccCCccCeEEEEec----CCCCceEEEE-eeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccc
Q 023643 80 IEPDGFLHGHDGPAYDVKFY----GGNEDALLLS-CGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWG 154 (279)
Q Consensus 80 ~~~~~~~~~h~~~v~~~~~~----~~~~~~~l~s-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (279)
.+.+..+.... ....++|+ |+++ ++++ ...+++|.++|..+.+....+. ..+.... . .
T Consensus 230 ~~~v~~i~~G~-~P~~ia~s~~~~pDGk--~l~v~n~~~~~v~ViD~~t~~~~~~i~-~~~~~~~--------~-----~ 292 (567)
T 1qks_A 230 PTTVAEIKIGS-EARSIETSKMEGWEDK--YAIAGAYWPPQYVIMDGETLEPKKIQS-TRGMTYD--------E-----Q 292 (567)
T ss_dssp CCEEEEEECCS-EEEEEEECCSTTCTTT--EEEEEEEETTEEEEEETTTCCEEEEEE-CCEECTT--------T-----C
T ss_pred CcEeEEEecCC-CCceeEEccccCCCCC--EEEEEEccCCeEEEEECCCCcEEEEEe-ccccccc--------c-----c
Confidence 33344444333 35789999 6988 5554 4556999999976532221111 1000000 0 0
Q ss_pred cCCCCCCceeEEEcCCCCe-EEEecCCCeEEEEecCCCcEEE--EeecCCcceEEEEEcCCCcEEEEe-cCCCeEEEEeC
Q 023643 155 ALSPVPENNAIAVDPQGGA-IFSAAGDSCAYCWDVESSRIKM--VFKGHSDYLHCIVARNSTNQIVTG-SEDGTARIWDC 230 (279)
Q Consensus 155 ~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~vwd~ 230 (279)
...+...+..+..++++.. ++.....|.|.++|....+.+. .+. ......++.|+|++++++++ ..++.|.++|+
T Consensus 293 ~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~ 371 (567)
T 1qks_A 293 EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDT 371 (567)
T ss_dssp CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred cccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEEC
Confidence 0001113567888887664 4555667999999987654322 222 33456788999999987655 46889999999
Q ss_pred CCCceEEEecC-CccccccCcceeeeEEEEcCC-CCEEEEEc-CcceEEeCC
Q 023643 231 KSGKCIKVIDP-VKDKQLKGVISCVSCITLDAS-ESWLVRVR-ATNYVILFS 279 (279)
Q Consensus 231 ~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~-~d~~i~~wd 279 (279)
.+++.+..+.. .. ..|...-..+ ++|+ +..++++. .++.|.++|
T Consensus 372 ~t~kl~~~i~vgg~----~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid 418 (567)
T 1qks_A 372 KEGKLVAIEDTGGQ----TPHPGRGANF-VHPTFGPVWATSHMGDDSVALIG 418 (567)
T ss_dssp TTTEEEEEEECSSS----SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEE
T ss_pred CCCcEEEEEeccCc----CCCCccceee-ECCCCCcEEEeCCCCCCeEEEec
Confidence 99998887753 21 2232211112 5787 45555553 467888764
No 201
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.53 E-value=1.3e-11 Score=94.94 Aligned_cols=204 Identities=15% Similarity=0.170 Sum_probs=128.1
Q ss_pred ccceEEEEECCCCCCCCCEEEE-------ecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVI-------ASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK 97 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~-------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 97 (279)
-....+++|++ ++.++++ +..++.|.+|+..++..... ......++...+.++.
T Consensus 17 ~~~~~~~~~~~----~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~---------------~~~~~~~~~~~~~~i~ 77 (314)
T 1pjx_A 17 IPGAEGPVFDK----NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI---------------CKPEVNGYGGIPAGCQ 77 (314)
T ss_dssp CTTCEEEEECT----TSCEEEEETTCEETTEECCEEEEECTTTCCEEEE---------------ECCEETTEECCEEEEE
T ss_pred CCCccCceECC----CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEE---------------EecccCCCCCCCceEE
Confidence 34567899998 8888888 67788999999876321100 0000112446688999
Q ss_pred ecCC-CCceEEEEeeCCCcEEEeecCCCccCcceeee-ccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEE
Q 023643 98 FYGG-NEDALLLSCGDDGRICGWRWKEFTESKVPINL-QGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF 175 (279)
Q Consensus 98 ~~~~-~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 175 (279)
+.++ +. ++++ +..+.|.+||.+ .. . ..+ ...... .+...+.++++++++++++
T Consensus 78 ~~~~~g~--l~v~-~~~~~l~~~d~~-g~---~-~~~~~~~~~~-----------------~~~~~~~~i~~d~~g~l~v 132 (314)
T 1pjx_A 78 CDRDANQ--LFVA-DMRLGLLVVQTD-GT---F-EEIAKKDSEG-----------------RRMQGCNDCAFDYEGNLWI 132 (314)
T ss_dssp ECSSSSE--EEEE-ETTTEEEEEETT-SC---E-EECCSBCTTS-----------------CBCBCCCEEEECTTSCEEE
T ss_pred EecCCCc--EEEE-ECCCCEEEEeCC-CC---E-EEEEeccCCC-----------------ccccCCcCEEECCCCCEEE
Confidence 9998 64 4444 444578889865 21 1 111 000000 0001267999999998777
Q ss_pred EecCC---------------CeEEEEecCCCcEEEEeecCCcceEEEEEc----CCCcEE-EEecCCCeEEEEeCC-CCc
Q 023643 176 SAAGD---------------SCAYCWDVESSRIKMVFKGHSDYLHCIVAR----NSTNQI-VTGSEDGTARIWDCK-SGK 234 (279)
Q Consensus 176 ~~~~d---------------~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~----~~~~~l-~~~~~d~~i~vwd~~-~~~ 234 (279)
+...+ +.|..||.. ++..... .+......++++ |+++.+ ++...++.|.+||+. +++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~ 210 (314)
T 1pjx_A 133 TAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAK 210 (314)
T ss_dssp EECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTE
T ss_pred EecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCc
Confidence 66554 578888876 5544333 233456889999 998654 555678999999986 444
Q ss_pred eEE--EecCCccccccCcc-eeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 235 CIK--VIDPVKDKQLKGVI-SCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 235 ~~~--~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
... .+.. +..+. .....++++++|+++++...++.|.+||
T Consensus 211 ~~~~~~~~~-----~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d 253 (314)
T 1pjx_A 211 IENKKVWGH-----IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFG 253 (314)
T ss_dssp EEEEEEEEE-----CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred cccceEEEE-----CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEc
Confidence 211 1110 12333 4578899999999888887788888875
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.53 E-value=9.6e-13 Score=113.03 Aligned_cols=197 Identities=7% Similarity=-0.049 Sum_probs=124.7
Q ss_pred cccceEEEEECCCCCCCCCEEEEecCC-----CcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643 24 LTRTVFRTVWGPSKDGSPDTIVIASSD-----GSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF 98 (279)
Q Consensus 24 ~~~~v~~~~~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 98 (279)
|...+..++||| ||++||.+..+ .+|++||+.+++ .+.. ..+...+..++|
T Consensus 161 ~~~~~~~~~~SP----DG~~la~~~~~~G~e~~~i~v~dl~tg~-------------------~~~~-~~~~~~~~~~~w 216 (741)
T 1yr2_A 161 GATALDAWAASD----DGRLLAYSVQDGGSDWRTVKFVGVADGK-------------------PLAD-ELKWVKFSGLAW 216 (741)
T ss_dssp --EEEEEEEECT----TSSEEEEEEEETTCSEEEEEEEETTTCC-------------------EEEE-EEEEEESCCCEE
T ss_pred CCEEEEeEEECC----CCCEEEEEEcCCCCceEEEEEEECCCCC-------------------CCCc-cCCCceeccEEE
Confidence 334688999999 99999887644 469999999842 2111 111122357899
Q ss_pred cCCCCceEEEEeeCCCc--------------EEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCcee
Q 023643 99 YGGNEDALLLSCGDDGR--------------ICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNA 164 (279)
Q Consensus 99 ~~~~~~~~l~s~~~dg~--------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 164 (279)
+|+ + .|+.++.++. |++|++.+..... ...+.... + ...+..
T Consensus 217 spD-~--~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~-~lv~~~~~-----------~---------~~~~~~ 272 (741)
T 1yr2_A 217 LGN-D--ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD-QPVFATPE-----------L---------PKRGHG 272 (741)
T ss_dssp STT-S--EEEEEECCCC--------CCCCCEEEEEETTSCGGGC-EEEECCTT-----------C---------TTCEEE
T ss_pred ECC-C--EEEEEEecCcccccccccCCCCCEEEEEECCCCchhC-EEEeccCC-----------C---------CeEEEE
Confidence 999 7 7777766554 7788875432111 11111100 0 002578
Q ss_pred EEEcCCCCeEEEecCC-----CeEEEEecCCC--cEEEEeecCCcceEEEEEcCCCcEEEEecC----CCeEEEEeCCCC
Q 023643 165 IAVDPQGGAIFSAAGD-----SCAYCWDVESS--RIKMVFKGHSDYLHCIVARNSTNQIVTGSE----DGTARIWDCKSG 233 (279)
Q Consensus 165 ~~~~~~~~~l~~~~~d-----~~i~i~d~~~~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~----d~~i~vwd~~~~ 233 (279)
+.|+|+|++|+..+.+ ..|++||+.++ +....+..+...+.... +|+++.|+..+. ++.|.+||+.++
T Consensus 273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 8999999988876644 38999999876 41444555555555543 488888777664 455999999875
Q ss_pred --ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 234 --KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 234 --~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
+....+ ..+...+..++++ ++.++++...|+..++|
T Consensus 352 ~~~~~~l~--------~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 389 (741)
T 1yr2_A 352 TPRFDTVV--------PESKDNLESVGIA-GNRLFASYIHDAKSQVL 389 (741)
T ss_dssp SCEEEEEE--------CCCSSEEEEEEEE-BTEEEEEEEETTEEEEE
T ss_pred ccccEEEe--------cCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 333333 2333456777887 56778888888887776
No 203
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.52 E-value=1.4e-11 Score=96.86 Aligned_cols=244 Identities=11% Similarity=-0.027 Sum_probs=137.1
Q ss_pred ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEec----------CCCcEEEEeCCCCCcccccccCCcc
Q 023643 4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS----------SDGSITSYSIPSCISKLPLGLSNSK 73 (279)
Q Consensus 4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~ 73 (279)
.|.++|.++.+ .+..+.....+ .++++| |+++++++. .++.|.+||..+.+....+..
T Consensus 48 ~v~v~D~~t~~--~~~~i~~g~~p--~i~~sp----Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~---- 115 (373)
T 2mad_H 48 QQWVLDAGSGS--ILGHVNGGFLP--NPVAAH----SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIEL---- 115 (373)
T ss_pred EEEEEECCCCe--EEEEecCCCCC--CeEECC----CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEEC----
Confidence 67888887764 24444433333 999999 899988875 367899999987322111100
Q ss_pred cceeeeccccccccCCccCeEEEEecCCCCceEEEEeeC--CCcEEEeecCCCccCcceeeeccC------cccceEEee
Q 023643 74 VQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGD--DGRICGWRWKEFTESKVPINLQGN------HVKPVLDLV 145 (279)
Q Consensus 74 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~------~~~~~~~~~ 145 (279)
....+ .. +......+.|+|+++ +|+.+.. ++.|.++| .+.+.........+. .........
T Consensus 116 ------~~~~~-~~-~g~~p~~~~~spDG~--~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 184 (373)
T 2mad_H 116 ------PDAPR-FD-VGPYSWMNANTPNNA--DLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLC 184 (373)
T ss_pred ------CCccc-cc-cCCCccceEECCCCC--EEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEc
Confidence 00000 00 112345789999998 7877764 57899999 764322110111000 000000000
Q ss_pred cCCCCCcccc-------CC-----CCCC--ceeEEEcCCCCeEEEecCCCeEEEEecCCCc--EEEEeec----------
Q 023643 146 NHQHKGPWGA-------LS-----PVPE--NNAIAVDPQGGAIFSAAGDSCAYCWDVESSR--IKMVFKG---------- 199 (279)
Q Consensus 146 ~~~~~~~~~~-------~~-----~~~~--i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~---------- 199 (279)
.......+.. .. .... .....+.+++..++..+..+.+.+.|+.... .+..+..
T Consensus 185 ~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~ 264 (373)
T 2mad_H 185 AQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTW 264 (373)
T ss_pred CCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccce
Confidence 0000000000 00 0000 0112334444444444467788889986542 2222221
Q ss_pred CCcceEEEEEcCCCcEEEEecC----------CCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCC-EEEE
Q 023643 200 HSDYLHCIVARNSTNQIVTGSE----------DGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASES-WLVR 268 (279)
Q Consensus 200 ~~~~i~~i~~~~~~~~l~~~~~----------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~ 268 (279)
.......++++|+++.+..+.. .+.|.++|+.+++.+..+.. + ....+++|+|||+ ++++
T Consensus 265 ~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-------g--~~p~~i~~s~Dg~~~l~v 335 (373)
T 2mad_H 265 RPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-------G--HDVDAISVAQDGGPDLYA 335 (373)
T ss_pred ecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-------C--CCcCeEEECCCCCeEEEE
Confidence 1122445788999887776543 46799999999999998842 2 1468999999999 7777
Q ss_pred Ec-CcceEEeCC
Q 023643 269 VR-ATNYVILFS 279 (279)
Q Consensus 269 ~~-~d~~i~~wd 279 (279)
+. .++.|.+||
T Consensus 336 ~~~~~~~V~ViD 347 (373)
T 2mad_H 336 LSAGTEVLHIYD 347 (373)
T ss_pred EcCCCCeEEEEE
Confidence 76 589999886
No 204
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.52 E-value=4.4e-13 Score=104.90 Aligned_cols=150 Identities=8% Similarity=0.068 Sum_probs=108.9
Q ss_pred CeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC
Q 023643 92 PAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG 171 (279)
Q Consensus 92 ~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 171 (279)
+++.+++++... ++++|+.+ .+.+|+++....... .-... ..+... ..... |+.++| ++
T Consensus 39 ~~nlLais~~~g--ll~a~~~~-~l~v~~~~~l~~~~~--~~~~~-~~~~~~------------~~lp~-V~~l~f--d~ 97 (388)
T 1xip_A 39 SLQNLDISNSKS--LFVAASGS-KAVVGELQLLRDHIT--SDSTP-LTFKWE------------KEIPD-VIFVCF--HG 97 (388)
T ss_dssp CCBCEEEETTTT--EEEEEETT-EEEEEEHHHHHHHHH--SSSCC-CCCSEE------------EECTT-EEEEEE--ET
T ss_pred cccEEEEcCCCC--EEEEeCCC-EEEEEEhhHhhhhhc--ccccc-ccceEE------------eeCCC-eeEEEE--CC
Confidence 688999999988 89999987 566699764321000 00000 000000 00112 789999 88
Q ss_pred CeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcc
Q 023643 172 GAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVI 251 (279)
Q Consensus 172 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 251 (279)
.+|+++ .++.|++||+++.........|...+.++.+.+. .+++++.||.|.+||+.+++... + .
T Consensus 98 ~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~-----------~ 162 (388)
T 1xip_A 98 DQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-L-----------A 162 (388)
T ss_dssp TEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-E-----------E
T ss_pred CEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-c-----------c
Confidence 999998 7899999999887766667777888888877654 38888999999999999887643 2 2
Q ss_pred eeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 252 SCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 252 ~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
..|++++|+|+| ++.|..||++++|+
T Consensus 163 ~~Vs~v~WSpkG--~~vg~~dg~i~~~~ 188 (388)
T 1xip_A 163 QNVTSFDVTNSQ--LAVLLKDRSFQSFA 188 (388)
T ss_dssp ESEEEEEECSSE--EEEEETTSCEEEEE
T ss_pred CCceEEEEcCCc--eEEEEcCCcEEEEc
Confidence 479999999999 78888999999873
No 205
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.51 E-value=2.2e-11 Score=94.23 Aligned_cols=204 Identities=12% Similarity=0.058 Sum_probs=126.9
Q ss_pred CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccc
Q 023643 3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEP 82 (279)
Q Consensus 3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (279)
+.|..||.++... ..+. ....+.+++|+| +++++++. .+ .|.+||..++... .
T Consensus 71 ~~i~~~d~~~~~~---~~~~-~~~~v~~i~~~~----dg~l~v~~-~~-gl~~~d~~~g~~~-----------------~ 123 (326)
T 2ghs_A 71 RELHELHLASGRK---TVHA-LPFMGSALAKIS----DSKQLIAS-DD-GLFLRDTATGVLT-----------------L 123 (326)
T ss_dssp TEEEEEETTTTEE---EEEE-CSSCEEEEEEEE----TTEEEEEE-TT-EEEEEETTTCCEE-----------------E
T ss_pred CEEEEEECCCCcE---EEEE-CCCcceEEEEeC----CCeEEEEE-CC-CEEEEECCCCcEE-----------------E
Confidence 5667777665432 1222 346799999999 88877664 44 4899998764211 0
Q ss_pred ccccc--CCccCeEEEEecCCCCceEEEEeeCC----CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643 83 DGFLH--GHDGPAYDVKFYGGNEDALLLSCGDD----GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL 156 (279)
Q Consensus 83 ~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (279)
+.... .....+..+.+.|++. ++++...+ +...||.+++. .. ..+... .
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~~g---~~-~~~~~~-~------------------ 178 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVAKG---KV-TKLFAD-I------------------ 178 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEETT---EE-EEEEEE-E------------------
T ss_pred EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEeCC---cE-EEeeCC-C------------------
Confidence 10111 1124588999999997 66554321 23445544311 11 111000 0
Q ss_pred CCCCCceeEEEcCCCCeEEEe-cCCCeEEEEecC--CC-c-----EEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEE
Q 023643 157 SPVPENNAIAVDPQGGAIFSA-AGDSCAYCWDVE--SS-R-----IKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARI 227 (279)
Q Consensus 157 ~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~--~~-~-----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~v 227 (279)
.....++|+|+++.++.+ +.++.|.+||+. ++ + ....+......+..++++++|++.++...++.|.+
T Consensus 179 ---~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~ 255 (326)
T 2ghs_A 179 ---SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDR 255 (326)
T ss_dssp ---SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEE
T ss_pred ---cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEE
Confidence 014688999999876554 557899999986 55 3 22233334456788999999988887767789999
Q ss_pred EeCCCCceEEEecCCccccccCcceeeeEEEEc-CCCCEEEEEc
Q 023643 228 WDCKSGKCIKVIDPVKDKQLKGVISCVSCITLD-ASESWLVRVR 270 (279)
Q Consensus 228 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 270 (279)
||. +++.+..+. .+...+++++|+ |++..|+.++
T Consensus 256 ~d~-~g~~~~~i~--------~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 256 YDT-DGNHIARYE--------VPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp ECT-TCCEEEEEE--------CSCSBEEEEEEESTTSCEEEEEE
T ss_pred ECC-CCCEEEEEE--------CCCCCcEEEEEecCCCCEEEEEe
Confidence 998 677777763 334568999998 8877665443
No 206
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.51 E-value=6.9e-12 Score=103.65 Aligned_cols=187 Identities=16% Similarity=0.093 Sum_probs=130.9
Q ss_pred CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEe
Q 023643 40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGW 119 (279)
Q Consensus 40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 119 (279)
.+.++++...+++|.++|..+ ++.+..+... ..+..+.|+|+++ ++++++.|+.|.+|
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t-------------------~~v~~~i~~g-~~p~~v~~SpDGr--~lyv~~~dg~V~vi 223 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGST-------------------YEIKTVLDTG-YAVHISRLSASGR--YLFVIGRDGKVNMI 223 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTT-------------------CCEEEEEECS-SCEEEEEECTTSC--EEEEEETTSEEEEE
T ss_pred CceEEEEeCCCCeEEEEECCC-------------------CeEEEEEeCC-CCccceEECCCCC--EEEEEcCCCeEEEE
Confidence 445677788899999999998 4444455432 3467899999998 89999999999999
Q ss_pred ecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEc----CCCCeEEEecC-CCeEEEEecCCCcEE
Q 023643 120 RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVD----PQGGAIFSAAG-DSCAYCWDVESSRIK 194 (279)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~~~-d~~i~i~d~~~~~~~ 194 (279)
|+... .......+.... ....++|+ |+|++++++.. ++.|.++|..+.+++
T Consensus 224 D~~~~-t~~~v~~i~~G~-----------------------~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~ 279 (567)
T 1qks_A 224 DLWMK-EPTTVAEIKIGS-----------------------EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 279 (567)
T ss_dssp ETTSS-SCCEEEEEECCS-----------------------EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEE
T ss_pred ECCCC-CCcEeEEEecCC-----------------------CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEE
Confidence 98411 112222221111 13688999 69998887665 589999999999988
Q ss_pred EEeecC-----------CcceEEEEEcCCC-cEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCC
Q 023643 195 MVFKGH-----------SDYLHCIVARNST-NQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS 262 (279)
Q Consensus 195 ~~~~~~-----------~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 262 (279)
..+... ...+..+..++++ .+++....+|.|.++|....+.+.... .........+.|+|+
T Consensus 280 ~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~-------i~~~~~~~d~~~~pd 352 (567)
T 1qks_A 280 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE-------ISAERFLHDGGLDGS 352 (567)
T ss_dssp EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE-------EECCSSEEEEEECTT
T ss_pred EEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeee-------eeccccccCceECCC
Confidence 876521 1257788888874 456667788999999988765333221 111224567899999
Q ss_pred CCEEEEEc-CcceEEeCC
Q 023643 263 ESWLVRVR-ATNYVILFS 279 (279)
Q Consensus 263 ~~~l~~~~-~d~~i~~wd 279 (279)
+++++++. .++.|.++|
T Consensus 353 gr~~~va~~~sn~V~ViD 370 (567)
T 1qks_A 353 HRYFITAANARNKLVVID 370 (567)
T ss_dssp SCEEEEEEGGGTEEEEEE
T ss_pred CCEEEEEeCCCCeEEEEE
Confidence 99887654 577788775
No 207
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.50 E-value=9.4e-12 Score=99.24 Aligned_cols=204 Identities=9% Similarity=0.086 Sum_probs=129.3
Q ss_pred cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643 26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA 105 (279)
Q Consensus 26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 105 (279)
.....++|+| +++++++...++.|++||..+. ........... .. ++|+|++.
T Consensus 131 ~~P~~la~d~----~g~lyv~d~~~~~I~~id~~~g-------------------~~~~~~~~~~~-~~-ia~~~~g~-- 183 (409)
T 3hrp_A 131 KYMWGIAAVG----NNTVLAYQRDDPRVRLISVDDN-------------------KVTTVHPGFKG-GK-PAVTKDKQ-- 183 (409)
T ss_dssp CCEEEEEECS----TTEEEEEETTTTEEEEEETTTT-------------------EEEEEEETCCB-CB-CEECTTSS--
T ss_pred CCceEEEEeC----CCCEEEEecCCCcEEEEECCCC-------------------EEEEeeccCCC-Cc-eeEecCCC--
Confidence 4678899999 8888888888899999999863 22222222222 23 89999998
Q ss_pred EEEEeeCCC--cEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeE
Q 023643 106 LLLSCGDDG--RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCA 183 (279)
Q Consensus 106 ~l~s~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 183 (279)
.|+++..++ .|.+++...... .... + .+... ....+.+++++|++..|+++..++.|
T Consensus 184 ~l~~~d~~~~~~I~~~d~~~~~~---~~~~-g-------~~~~~----------~~~~p~~iav~p~~g~lyv~d~~~~I 242 (409)
T 3hrp_A 184 RVYSIGWEGTHTVYVYMKASGWA---PTRI-G-------QLGST----------FSGKIGAVALDETEEWLYFVDSNKNF 242 (409)
T ss_dssp EEEEEBSSTTCEEEEEEGGGTTC---EEEE-E-------ECCTT----------SCSCCCBCEECTTSSEEEEECTTCEE
T ss_pred cEEEEecCCCceEEEEEcCCCce---eEEe-e-------eccch----------hcCCcEEEEEeCCCCeEEEEECCCcE
Confidence 888887766 677777543211 1111 0 00000 00125789999966666667778999
Q ss_pred EEEecCCCcEEEE----eecCCcce-E-EEEEcC-CCcEEEEecCCCeEEEEeCCCCceEEEecCCc-cccc------cC
Q 023643 184 YCWDVESSRIKMV----FKGHSDYL-H-CIVARN-STNQIVTGSEDGTARIWDCKSGKCIKVIDPVK-DKQL------KG 249 (279)
Q Consensus 184 ~i~d~~~~~~~~~----~~~~~~~i-~-~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~------~~ 249 (279)
+.||..++..... ..++...- . .++|+| ++.++++-..++.|+.|+.... ...+.... ...+ ..
T Consensus 243 ~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~ 320 (409)
T 3hrp_A 243 GRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEA 320 (409)
T ss_dssp EEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGC
T ss_pred EEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCccccc
Confidence 9999987754332 22222222 3 899999 4777778788999999997543 22221110 0000 01
Q ss_pred cceeeeEEEEcCCCCEEEEEc-CcceEEeCC
Q 023643 250 VISCVSCITLDASESWLVRVR-ATNYVILFS 279 (279)
Q Consensus 250 ~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd 279 (279)
.-.....++++|+|+++++-+ .++.|+.||
T Consensus 321 ~~~~P~gia~d~dG~lyvad~~~~~~I~~~~ 351 (409)
T 3hrp_A 321 LFAQPNGMTVDEDGNFYIVDGFKGYCLRKLD 351 (409)
T ss_dssp BCSSEEEEEECTTCCEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEeCCCCEEEEeCCCCCEEEEEE
Confidence 123468899999999888887 788888774
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.50 E-value=1.3e-10 Score=88.65 Aligned_cols=197 Identities=9% Similarity=-0.041 Sum_probs=137.4
Q ss_pred cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643 24 LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE 103 (279)
Q Consensus 24 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 103 (279)
....+.++++.+ ++.+.++...++.|.+|+.. ... .. ..+..+...+.++++.+++.
T Consensus 18 ~~~~p~~i~~d~----~g~l~v~~~~~~~v~~~~~~-~~~-----------------~~-~~~~~~~~~~~~i~~~~~g~ 74 (300)
T 2qc5_A 18 PDSGPYGITSSE----DGKVWFTQHKANKISSLDQS-GRI-----------------KE-FEVPTPDAKVMCLIVSSLGD 74 (300)
T ss_dssp TTCCEEEEEECT----TSCEEEEETTTTEEEEECTT-SCE-----------------EE-EECSSTTCCEEEEEECTTSC
T ss_pred CCCCcceeeECC----CCCEEEEcCCCCeEEEECCC-Cce-----------------EE-EECCCCCCcceeEEECCCCC
Confidence 346788999999 89988888788999999987 321 00 11122335688999999887
Q ss_pred ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeE
Q 023643 104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCA 183 (279)
Q Consensus 104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 183 (279)
++++...++.|..+|.. ... ........ ...+..+++++++.++++...++.|
T Consensus 75 --l~v~~~~~~~v~~~d~~-g~~--~~~~~~~~----------------------~~~~~~i~~~~~g~l~v~~~~~~~i 127 (300)
T 2qc5_A 75 --IWFTENGANKIGKLSKK-GGF--TEYPLPQP----------------------DSGPYGITEGLNGDIWFTQLNGDRI 127 (300)
T ss_dssp --EEEEETTTTEEEEECTT-SCE--EEEECSST----------------------TCCEEEEEECSTTCEEEEETTTTEE
T ss_pred --EEEEecCCCeEEEECCC-CCe--EEecCCCC----------------------CCCCccceECCCCCEEEEccCCCeE
Confidence 77777668889999864 211 11111100 0125789999999877777768899
Q ss_pred EEEecCCCcEEE-EeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCC
Q 023643 184 YCWDVESSRIKM-VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS 262 (279)
Q Consensus 184 ~i~d~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 262 (279)
..+|.. ++... .+......+.++++.++++.+++...++.|..+|. +++... +.. ..+...+.+++++++
T Consensus 128 ~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~------~~~~~~~~~i~~d~~ 198 (300)
T 2qc5_A 128 GKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPL------PTNAAAPVGITSGND 198 (300)
T ss_dssp EEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EEC------SSTTCCEEEEEECTT
T ss_pred EEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeC------CCCCCCcceEEECCC
Confidence 999987 65543 23334467899999999998887777889999998 565543 321 233356789999999
Q ss_pred CCEEEEEcCcceEEeCC
Q 023643 263 ESWLVRVRATNYVILFS 279 (279)
Q Consensus 263 ~~~l~~~~~d~~i~~wd 279 (279)
+.++++....+.|.+||
T Consensus 199 g~l~v~~~~~~~i~~~~ 215 (300)
T 2qc5_A 199 GALWFVEIMGNKIGRIT 215 (300)
T ss_dssp SSEEEEETTTTEEEEEC
T ss_pred CCEEEEccCCCEEEEEc
Confidence 98888777777787765
No 209
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.49 E-value=3.8e-12 Score=109.32 Aligned_cols=219 Identities=11% Similarity=0.042 Sum_probs=134.5
Q ss_pred ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCc--------------EEEEeCCCCCccccccc
Q 023643 4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGS--------------ITSYSIPSCISKLPLGL 69 (279)
Q Consensus 4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~--------------i~iw~~~~~~~~~~~~~ 69 (279)
.|++||++++.. +.. ..+...+..++|+| | +.|+.++.++. |++|++.+.....
T Consensus 190 ~i~v~dl~tg~~--~~~-~~~~~~~~~~~wsp----D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~---- 257 (741)
T 1yr2_A 190 TVKFVGVADGKP--LAD-ELKWVKFSGLAWLG----N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD---- 257 (741)
T ss_dssp EEEEEETTTCCE--EEE-EEEEEESCCCEEST----T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGC----
T ss_pred EEEEEECCCCCC--CCc-cCCCceeccEEEEC----C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhC----
Confidence 589999888753 221 22222346789999 8 88888776654 8888887632100
Q ss_pred CCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCC-----cEEEeecCCCccCcceeeeccCcccceEEe
Q 023643 70 SNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDG-----RICGWRWKEFTESKVPINLQGNHVKPVLDL 144 (279)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (279)
..+.....+...+..+.|+|+++ +|+..+.++ .|++||+...... ....+.....
T Consensus 258 -----------~lv~~~~~~~~~~~~~~~SpDG~--~l~~~~~~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~------ 317 (741)
T 1yr2_A 258 -----------QPVFATPELPKRGHGASVSSDGR--WVVITSSEGTDPVNTVHVARVTNGKIG-PVTALIPDLK------ 317 (741)
T ss_dssp -----------EEEECCTTCTTCEEEEEECTTSC--EEEEEEECTTCSCCEEEEEEEETTEEC-CCEEEECSSS------
T ss_pred -----------EEEeccCCCCeEEEEEEECCCCC--EEEEEEEccCCCcceEEEEECCCCCCc-ccEEecCCCC------
Confidence 01111223334588999999998 777666543 7899997542101 0111111110
Q ss_pred ecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC----CCeEEEEecCCC--cEEEEeecCCcceEEEEEcCCCcEEEE
Q 023643 145 VNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG----DSCAYCWDVESS--RIKMVFKGHSDYLHCIVARNSTNQIVT 218 (279)
Q Consensus 145 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~--~~~~~~~~~~~~i~~i~~~~~~~~l~~ 218 (279)
.+... ++|++..|+..+. ++.|.+||+.++ +....+..+...+..++++ ++.++++
T Consensus 318 ----------------~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~ 379 (741)
T 1yr2_A 318 ----------------AQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFAS 379 (741)
T ss_dssp ----------------SCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEE
T ss_pred ----------------ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEE
Confidence 02223 3478888877765 456999999874 3444455555567777877 5677888
Q ss_pred ecCCCeEEEEeCC-CCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEE----cCcceEEeCC
Q 023643 219 GSEDGTARIWDCK-SGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV----RATNYVILFS 279 (279)
Q Consensus 219 ~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~d~~i~~wd 279 (279)
...|+..+||.+. +++....+.. .....+..++++|++..|+.. ...+.|++||
T Consensus 380 ~~~dg~~~l~~~~~~g~~~~~l~~-------~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 438 (741)
T 1yr2_A 380 YIHDAKSQVLAFDLDGKPAGAVSL-------PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALD 438 (741)
T ss_dssp EEETTEEEEEEEETTSCEEEECBC-------SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEE
T ss_pred EEECCEEEEEEEeCCCCceeeccC-------CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence 8889987777554 4555555531 134568889999998766532 2346777764
No 210
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.47 E-value=3.4e-11 Score=92.31 Aligned_cols=210 Identities=11% Similarity=0.041 Sum_probs=130.1
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
+|.|..|+.++. ...+..+...+..+++++ +++++++...++.|.+|+... ....
T Consensus 66 ~~~i~~~~~~g~----~~~~~~~~~~~~gl~~d~----dG~l~v~~~~~~~v~~~~~~g-~~~~---------------- 120 (305)
T 3dr2_A 66 GRRVLGWREDGT----VDVLLDATAFTNGNAVDA----QQRLVHCEHGRRAITRSDADG-QAHL---------------- 120 (305)
T ss_dssp TTEEEEEETTSC----EEEEEESCSCEEEEEECT----TSCEEEEETTTTEEEEECTTS-CEEE----------------
T ss_pred CCEEEEEeCCCC----EEEEeCCCCccceeeECC----CCCEEEEECCCCEEEEECCCC-CEEE----------------
Confidence 355667766432 233444567789999999 899877766778899999752 1100
Q ss_pred ccccccC-CccCeEEEEecCCCCceEEEE----eeC-------------CCcEEEeecCCCccCcceeeeccCcccceEE
Q 023643 82 PDGFLHG-HDGPAYDVKFYGGNEDALLLS----CGD-------------DGRICGWRWKEFTESKVPINLQGNHVKPVLD 143 (279)
Q Consensus 82 ~~~~~~~-h~~~v~~~~~~~~~~~~~l~s----~~~-------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 143 (279)
......+ ....+..+.+.|++. +++| +.. .+.|..++..+.... ... . .
T Consensus 121 ~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~---~~~-~-~------ 187 (305)
T 3dr2_A 121 LVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ---RMA-D-L------ 187 (305)
T ss_dssp EECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE---EEE-E-E------
T ss_pred EEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE---EEe-c-C------
Confidence 0001111 113467799999987 7775 332 234555554322110 000 0 0
Q ss_pred eecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCC------CeEEEEecCCCcEE--EEe-ecCCcceEEEEEcCCCc
Q 023643 144 LVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD------SCAYCWDVESSRIK--MVF-KGHSDYLHCIVARNSTN 214 (279)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~--~~~-~~~~~~i~~i~~~~~~~ 214 (279)
...+.++|+|+++.|+++... +.|.+||+..+... ..+ .........++++++|+
T Consensus 188 ----------------~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~ 251 (305)
T 3dr2_A 188 ----------------DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW 251 (305)
T ss_dssp ----------------SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC
T ss_pred ----------------CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC
Confidence 014689999999988777655 78999998765411 111 11234456788999999
Q ss_pred EEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643 215 QIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL 277 (279)
Q Consensus 215 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 277 (279)
+.++ ..+ .|.+|+. .++.+..+.. +. .+..++|+|+++.|..++.++..++
T Consensus 252 lwv~-~~~-gv~~~~~-~g~~~~~~~~--------~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 252 LWSS-SGT-GVCVFDS-DGQLLGHIPT--------PG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp EEEC-CSS-EEEEECT-TSCEEEEEEC--------SS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred EEEe-cCC-cEEEECC-CCCEEEEEEC--------CC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 5544 444 4999997 5777777732 22 4788999999988888877776554
No 211
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.45 E-value=2.3e-11 Score=94.88 Aligned_cols=239 Identities=11% Similarity=0.031 Sum_probs=142.0
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEec----------CCCcEEEEeCCCCCcccccccCC
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS----------SDGSITSYSIPSCISKLPLGLSN 71 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~ 71 (279)
++.|.+.|.++.+ .+..+..-..+ .++++| +++++++++ .++.|.+||..+.
T Consensus 58 ~~~V~ViD~~t~~--v~~~I~vG~~P--~va~sp----DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~---------- 119 (386)
T 3sjl_D 58 VTQQFVIDGEAGR--VIGMIDGGFLP--NPVVAD----DGSFIAHASTVFSRIARGERTDYVEVFDPVTL---------- 119 (386)
T ss_dssp SEEEEEEETTTTE--EEEEEEECSSC--EEEECT----TSSCEEEEEEEEEETTEEEEEEEEEEECTTTC----------
T ss_pred CCEEEEEECCCCe--EEEEEECCCCC--cEEECC----CCCEEEEEcccccccccCCCCCEEEEEECCCC----------
Confidence 5678888887764 35555544444 499999 899887765 3678999999984
Q ss_pred cccceeeeccccccccCC-------ccCeEEEEecCCCCceEEEEeeC--CCcEEEeecCCCccCcceeeec-----cCc
Q 023643 72 SKVQQLLGIEPDGFLHGH-------DGPAYDVKFYGGNEDALLLSCGD--DGRICGWRWKEFTESKVPINLQ-----GNH 137 (279)
Q Consensus 72 ~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~l~s~~~--dg~i~iw~~~~~~~~~~~~~~~-----~~~ 137 (279)
+.+..+.-. ......+.|+|+++ +++.+.. ++.|.++|+.+.+....+.... ...
T Consensus 120 ---------~v~~~I~v~~g~r~~~g~~P~~~a~spDGk--~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g 188 (386)
T 3sjl_D 120 ---------LPTADIELPDAPRFLVGTYPWMTSLTPDGK--TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTA 188 (386)
T ss_dssp ---------CEEEEEEETTCCCCCBSCCGGGEEECTTSS--EEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEE
T ss_pred ---------eEEEEEECCCccccccCCCCceEEEcCCCC--EEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCC
Confidence 333333210 12345689999998 7766653 6899999987653222211000 000
Q ss_pred ccceEE---------eecCCCCCcc----ccCCCC-CCc-eeEEEc-CCCCeEEEecCCCeEEEEecCCCc--EEEEee-
Q 023643 138 VKPVLD---------LVNHQHKGPW----GALSPV-PEN-NAIAVD-PQGGAIFSAAGDSCAYCWDVESSR--IKMVFK- 198 (279)
Q Consensus 138 ~~~~~~---------~~~~~~~~~~----~~~~~~-~~i-~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~- 198 (279)
...+.. +......... ..+... ..+ ....|. +++++++ .+.+|.|++.|+.+.. ....+.
T Consensus 189 ~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~ 267 (386)
T 3sjl_D 189 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEA 267 (386)
T ss_dssp TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEES
T ss_pred CceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceec
Confidence 000111 1111100000 011110 111 124554 5665555 5558999999997654 222221
Q ss_pred --------c-CCcceEEEEEcCCCcEEEEecC----------CCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEE
Q 023643 199 --------G-HSDYLHCIVARNSTNQIVTGSE----------DGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITL 259 (279)
Q Consensus 199 --------~-~~~~i~~i~~~~~~~~l~~~~~----------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 259 (279)
+ ..+....++++++++.++.... .+.|.++|+.+++.+..+.. + ..+.++++
T Consensus 268 ~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-------g--~~~~~lav 338 (386)
T 3sjl_D 268 LTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-------G--HEIDSINV 338 (386)
T ss_dssp SCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-------E--EEECEEEE
T ss_pred cccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-------C--CCcceEEE
Confidence 0 1123345777898877766532 35799999999999999842 2 36789999
Q ss_pred cCCCC-EEEEE-cCcceEEeCC
Q 023643 260 DASES-WLVRV-RATNYVILFS 279 (279)
Q Consensus 260 ~~~~~-~l~~~-~~d~~i~~wd 279 (279)
++|++ +|+++ ..++.|.++|
T Consensus 339 s~D~~~~ly~tn~~~~~VsViD 360 (386)
T 3sjl_D 339 SQDEKPLLYALSTGDKTLYIHD 360 (386)
T ss_dssp CSSSSCEEEEEETTTTEEEEEE
T ss_pred CCCCCeEEEEEcCCCCeEEEEE
Confidence 99996 66664 5588898876
No 212
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.44 E-value=1.1e-10 Score=89.15 Aligned_cols=198 Identities=15% Similarity=0.172 Sum_probs=124.3
Q ss_pred cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643 26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA 105 (279)
Q Consensus 26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 105 (279)
.--.+..|+|. ++.++++...++.|..||..+.. . ..+ .....+.++++.|++.
T Consensus 13 ~~~Egp~w~~~---~~~l~~~d~~~~~i~~~d~~~~~-------------------~-~~~-~~~~~~~~i~~~~dG~-- 66 (297)
T 3g4e_A 13 RCGESPVWEEV---SNSLLFVDIPAKKVCRWDSFTKQ-------------------V-QRV-TMDAPVSSVALRQSGG-- 66 (297)
T ss_dssp SBEEEEEEETT---TTEEEEEETTTTEEEEEETTTCC-------------------E-EEE-ECSSCEEEEEEBTTSS--
T ss_pred ccccCCeEECC---CCEEEEEECCCCEEEEEECCCCc-------------------E-EEE-eCCCceEEEEECCCCC--
Confidence 34557889983 56677777788999999998631 1 112 1345789999999997
Q ss_pred EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC------
Q 023643 106 LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG------ 179 (279)
Q Consensus 106 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------ 179 (279)
++++. ++.|.+||.++... .......... +...++.++++|+++++++...
T Consensus 67 l~v~~--~~~l~~~d~~~g~~-~~~~~~~~~~--------------------~~~~~~di~~d~dG~l~~~~~~~~~~~~ 123 (297)
T 3g4e_A 67 YVATI--GTKFCALNWKEQSA-VVLATVDNDK--------------------KNNRFNDGKVDPAGRYFAGTMAEETAPA 123 (297)
T ss_dssp EEEEE--TTEEEEEETTTTEE-EEEEECCTTC--------------------SSEEEEEEEECTTSCEEEEEEECCSBTT
T ss_pred EEEEE--CCeEEEEECCCCcE-EEEEecCCCC--------------------CCCCCCCEEECCCCCEEEecCCcccccc
Confidence 55553 56799999754211 1111100000 0012578999999986664421
Q ss_pred -----CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEE-EEecCCCeEEEEeC--CCCceE--EEecCCccccccC
Q 023643 180 -----DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQI-VTGSEDGTARIWDC--KSGKCI--KVIDPVKDKQLKG 249 (279)
Q Consensus 180 -----d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd~--~~~~~~--~~~~~~~~~~~~~ 249 (279)
.+.|..+|.. ++... +..+......++|+|+++.| ++.+.++.|.+||+ .++... ..+.. +..
T Consensus 124 ~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~-----~~~ 196 (297)
T 3g4e_A 124 VLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYK-----LEK 196 (297)
T ss_dssp BCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEE-----CCG
T ss_pred cccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEE-----CCC
Confidence 2345555543 33333 33334456889999999865 56667899999987 455432 11210 022
Q ss_pred cceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 250 VISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 250 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+......++++++|++.++....+.|..||
T Consensus 197 ~~~~p~g~~~d~~G~lwva~~~~~~v~~~d 226 (297)
T 3g4e_A 197 EEQIPDGMCIDAEGKLWVACYNGGRVIRLD 226 (297)
T ss_dssp GGCEEEEEEEBTTSCEEEEEETTTEEEEEC
T ss_pred CCCCCCeeEECCCCCEEEEEcCCCEEEEEc
Confidence 335678899999999888877778888875
No 213
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.43 E-value=1.5e-11 Score=97.53 Aligned_cols=237 Identities=10% Similarity=0.003 Sum_probs=145.4
Q ss_pred CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEec----------CCCcEEEEeCCCCCcccccccCCc
Q 023643 3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS----------SDGSITSYSIPSCISKLPLGLSNS 72 (279)
Q Consensus 3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~ 72 (279)
+.|.++|.++.+ .+..+..-..+ .++++| |+++|+++. .++.|.++|..+.+
T Consensus 99 ~~VsVID~~t~~--vv~~I~vG~~P--gia~Sp----Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~---------- 160 (426)
T 3c75_H 99 TQQFVIDGSTGR--ILGMTDGGFLP--HPVAAE----DGSFFAQASTVFERIARGKRTDYVEVFDPVTFL---------- 160 (426)
T ss_dssp EEEEEEETTTTE--EEEEEEECSSC--EEEECT----TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC----------
T ss_pred CeEEEEECCCCE--EEEEEECCCCC--ceEECC----CCCEEEEEeccccccccCCCCCEEEEEECCCCc----------
Confidence 688899988764 35555544455 899999 898888776 36789999999843
Q ss_pred ccceeeeccccccccC-------CccCeEEEEecCCCCceEEEEeeC--CCcEEEeecCCCccCcceeeeccC------c
Q 023643 73 KVQQLLGIEPDGFLHG-------HDGPAYDVKFYGGNEDALLLSCGD--DGRICGWRWKEFTESKVPINLQGN------H 137 (279)
Q Consensus 73 ~~~~~~~~~~~~~~~~-------h~~~v~~~~~~~~~~~~~l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~------~ 137 (279)
.+..+.- .......+.|+|+++ +++.+.. ++.|.+.|+.+.+....+.. .+. .
T Consensus 161 ---------vv~~I~v~g~~r~~~g~~P~~~~~spDGk--~lyV~n~~~~~~VsVID~~t~kvv~~I~v-~g~~~~~p~g 228 (426)
T 3c75_H 161 ---------PIADIELPDAPRFLVGTYQWMNALTPDNK--NLLFYQFSPAPAVGVVDLEGKTFDRMLDV-PDCYHIFPAS 228 (426)
T ss_dssp ---------EEEEEEETTCCCCCBSCCGGGSEECTTSS--EEEEEECSSSCEEEEEETTTTEEEEEEEC-CSEEEEEEEE
T ss_pred ---------EEEEEECCCccccccCCCcceEEEcCCCC--EEEEEecCCCCeEEEEECCCCeEEEEEEc-CCceeeccCC
Confidence 2222210 012345678999998 7777653 68899999876432221111 000 0
Q ss_pred ccceEEeecCC--------CCC-------ccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEE--Eeec-
Q 023643 138 VKPVLDLVNHQ--------HKG-------PWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKM--VFKG- 199 (279)
Q Consensus 138 ~~~~~~~~~~~--------~~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~- 199 (279)
...+..+...+ ... .+... ...-...+.+.+++..++.....+.+.+.|........ .+..
T Consensus 229 ~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~-~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~ 307 (426)
T 3c75_H 229 PTVFYMNCRDGSLARVDFADGETKVTNTEVFHTE-DELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEAL 307 (426)
T ss_dssp TTEEEEEETTSSEEEEECCTTCCEEEECCCCSCT-TSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESS
T ss_pred CcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccC-CCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeec
Confidence 00001110000 000 00000 00011235678888877777778999999987543221 1110
Q ss_pred ---------CCcceEEEEEcCCCcEEEEecC----------CCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEc
Q 023643 200 ---------HSDYLHCIVARNSTNQIVTGSE----------DGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLD 260 (279)
Q Consensus 200 ---------~~~~i~~i~~~~~~~~l~~~~~----------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 260 (279)
.......++++|+++.++.... ++.|.++|+.+.+.+.++.. + ....+++|+
T Consensus 308 ~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-------g--~~P~gia~s 378 (426)
T 3c75_H 308 TEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-------G--HEIDSINVS 378 (426)
T ss_dssp CTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-------E--EEECEEEEC
T ss_pred cccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-------C--CCcCeEEEc
Confidence 0111223789999877666532 45799999999999999842 1 247889999
Q ss_pred CCCC-EEEEEc-CcceEEeCC
Q 023643 261 ASES-WLVRVR-ATNYVILFS 279 (279)
Q Consensus 261 ~~~~-~l~~~~-~d~~i~~wd 279 (279)
||++ ++++.. .++.|.++|
T Consensus 379 pDg~~~lyv~n~~s~~VsVID 399 (426)
T 3c75_H 379 QDAEPLLYALSAGTQTLHIYD 399 (426)
T ss_dssp CSSSCEEEEEETTTTEEEEEE
T ss_pred cCCCEEEEEEcCCCCeEEEEE
Confidence 9998 888877 589998876
No 214
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.43 E-value=4e-11 Score=91.96 Aligned_cols=203 Identities=9% Similarity=-0.001 Sum_probs=126.7
Q ss_pred eeeeecccceEEEEECCCCCCCCC-EEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643 19 KEREILTRTVFRTVWGPSKDGSPD-TIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK 97 (279)
Q Consensus 19 ~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 97 (279)
..+...........|+| +++ ++++...++.|..|+... + ...+..+...+..+.
T Consensus 38 ~~l~~~~~~~egp~~~~----~g~~l~~~d~~~~~i~~~~~~g--------------------~-~~~~~~~~~~~~gl~ 92 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWE----AQRTLVWSDLVGRRVLGWREDG--------------------T-VDVLLDATAFTNGNA 92 (305)
T ss_dssp EEEECCCSSEEEEEEEG----GGTEEEEEETTTTEEEEEETTS--------------------C-EEEEEESCSCEEEEE
T ss_pred EEEecCCcCccCCeEeC----CCCEEEEEECCCCEEEEEeCCC--------------------C-EEEEeCCCCccceee
Confidence 33444445677899999 787 777888889999998742 1 123333556689999
Q ss_pred ecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEE-
Q 023643 98 FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFS- 176 (279)
Q Consensus 98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~- 176 (279)
+.+++. ++++...++.|.+|+.+ .. ...+...... . ....++.++++|+|+++++
T Consensus 93 ~d~dG~--l~v~~~~~~~v~~~~~~-g~----~~~~~~~~~~--------~---------~~~~~~~i~~d~dG~l~~td 148 (305)
T 3dr2_A 93 VDAQQR--LVHCEHGRRAITRSDAD-GQ----AHLLVGRYAG--------K---------RLNSPNDLIVARDGAIWFTD 148 (305)
T ss_dssp ECTTSC--EEEEETTTTEEEEECTT-SC----EEEEECEETT--------E---------ECSCCCCEEECTTSCEEEEC
T ss_pred ECCCCC--EEEEECCCCEEEEECCC-CC----EEEEEeccCC--------C---------ccCCCCCEEECCCCCEEEeC
Confidence 999987 66666666889999864 21 1111100000 0 0012578999999987776
Q ss_pred ---ecC-------------CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC------CeEEEEeCCCCc
Q 023643 177 ---AAG-------------DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED------GTARIWDCKSGK 234 (279)
Q Consensus 177 ---~~~-------------d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------~~i~vwd~~~~~ 234 (279)
|.. .+.|..+|..+++..... .......++|+|+++.|+.+... +.|.+|++..+.
T Consensus 149 ~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 149 PPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA 226 (305)
T ss_dssp CSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred cCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence 432 356888888777654433 33456789999999977666554 789999987654
Q ss_pred eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 235 CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
+....... .........++++++|++.++. .++ |.+|+
T Consensus 227 -l~~~~~~~----~~~~~~pdgi~~d~~G~lwv~~-~~g-v~~~~ 264 (305)
T 3dr2_A 227 -LHDRRHFA----SVPDGLPDGFCVDRGGWLWSSS-GTG-VCVFD 264 (305)
T ss_dssp -EEEEEEEE----CCSSSCCCSEEECTTSCEEECC-SSE-EEEEC
T ss_pred -ccCCeEEE----ECCCCCCCeEEECCCCCEEEec-CCc-EEEEC
Confidence 21110000 1112234568899999855443 444 66664
No 215
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.36 E-value=1.1e-13 Score=109.03 Aligned_cols=179 Identities=13% Similarity=0.072 Sum_probs=93.2
Q ss_pred CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEe
Q 023643 40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGW 119 (279)
Q Consensus 40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 119 (279)
++.++++++.||.|+.||..++ +.+-.+.. +++.+..+.+++. .+++++.||.|+.|
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG-------------------~~~W~~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~ 64 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTG-------------------SIKWTLKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTL 64 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTC-------------------CEEEEEEC--CCSCCCC-----C--CEEECTTTCCEEEC
T ss_pred eCCEEEEEcCCCEEEEEECCCC-------------------CEEEEecC--CCceecceEcCCC--EEEEeCCCCEEEEE
Confidence 5788999999999999999984 33333332 3344444455665 77888899999999
Q ss_pred ecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec
Q 023643 120 RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG 199 (279)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 199 (279)
|.++.+.. ..........+ . .+..+. .+..+++++.++.|+.||..+|+.+..+..
T Consensus 65 d~~tG~~~---w~~~~~~~~~~-------~-------------~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~ 120 (369)
T 2hz6_A 65 GSKNNEGL---TKLPFTIPELV-------Q-------------ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS 120 (369)
T ss_dssp -----CCS---EECSCCHHHHH-------T-------------TCSCC------CCCCEEEEEEEEECCC----------
T ss_pred ECCCCcee---eeeeccCcccc-------c-------------cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC
Confidence 98654221 11111100000 0 000111 244677888899999999999999888765
Q ss_pred CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCC---CEEEEEcCcceEE
Q 023643 200 HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASE---SWLVRVRATNYVI 276 (279)
Q Consensus 200 ~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~ 276 (279)
+. ...++|++..+++++.|+.|+.||.++|+.+..+.. + .....+++++. ..+++++.||.+.
T Consensus 121 ~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~--------~--~~~~~~~~~~~~~~~~v~~~~~dg~v~ 186 (369)
T 2hz6_A 121 AF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATY--------F--DYAASLPEDDVDYKMSHFVSNGDGLVV 186 (369)
T ss_dssp ----------------EEEEEEEEEEECCCSSSSSCCCEEEE--------E--EECCBCCCCCTTCCCCEEEEETSCEEE
T ss_pred CC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEec--------c--cccCccccCCccccceEEEECCCCEEE
Confidence 43 234567888999999999999999999988766531 1 11223344432 4567778888888
Q ss_pred eCC
Q 023643 277 LFS 279 (279)
Q Consensus 277 ~wd 279 (279)
.||
T Consensus 187 a~d 189 (369)
T 2hz6_A 187 TVD 189 (369)
T ss_dssp EEC
T ss_pred EEE
Confidence 876
No 216
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.35 E-value=8.6e-10 Score=85.32 Aligned_cols=195 Identities=10% Similarity=0.026 Sum_probs=120.1
Q ss_pred eEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEE
Q 023643 28 VFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALL 107 (279)
Q Consensus 28 v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 107 (279)
..+.+|+|. ++.++++...++.|..|+..++. . ..+. ....+.++.|.|++. ++
T Consensus 51 ~egp~~~~~---~~~l~~~d~~~~~i~~~d~~~~~-------------------~-~~~~-~~~~v~~i~~~~dg~--l~ 104 (326)
T 2ghs_A 51 GEGPTFDPA---SGTAWWFNILERELHELHLASGR-------------------K-TVHA-LPFMGSALAKISDSK--QL 104 (326)
T ss_dssp EEEEEEETT---TTEEEEEEGGGTEEEEEETTTTE-------------------E-EEEE-CSSCEEEEEEEETTE--EE
T ss_pred CcCCeEeCC---CCEEEEEECCCCEEEEEECCCCc-------------------E-EEEE-CCCcceEEEEeCCCe--EE
Confidence 467889992 35667777788999999988631 1 1111 235689999999986 55
Q ss_pred EEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC------CC
Q 023643 108 LSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG------DS 181 (279)
Q Consensus 108 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------d~ 181 (279)
++. .+ .|.+||.++.... ......... ....++.++++|+++++++... .+
T Consensus 105 v~~-~~-gl~~~d~~~g~~~-~~~~~~~~~--------------------~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~ 161 (326)
T 2ghs_A 105 IAS-DD-GLFLRDTATGVLT-LHAELESDL--------------------PGNRSNDGRMHPSGALWIGTMGRKAETGAG 161 (326)
T ss_dssp EEE-TT-EEEEEETTTCCEE-EEECSSTTC--------------------TTEEEEEEEECTTSCEEEEEEETTCCTTCE
T ss_pred EEE-CC-CEEEEECCCCcEE-EEeeCCCCC--------------------CCCCCCCEEECCCCCEEEEeCCCcCCCCce
Confidence 544 44 4889987543210 000000000 0012688999999986655432 25
Q ss_pred eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEE-EEecCCCeEEEEeCC--CC-ceE--EEecCCccccccCcceeee
Q 023643 182 CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQI-VTGSEDGTARIWDCK--SG-KCI--KVIDPVKDKQLKGVISCVS 255 (279)
Q Consensus 182 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd~~--~~-~~~--~~~~~~~~~~~~~~~~~v~ 255 (279)
.|..+| +++... +..+......++|+|+++.+ ++.+.++.|.+||+. ++ +.. ..+.. +........
T Consensus 162 ~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~-----~~~~~~~p~ 233 (326)
T 2ghs_A 162 SIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID-----STGIKGGMD 233 (326)
T ss_dssp EEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE-----CTTSSSEEE
T ss_pred EEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEE-----CCCCCCCCC
Confidence 666666 454433 32233456789999999865 455667899999986 55 321 11110 012234567
Q ss_pred EEEEcCCCCEEEEEcCcceEEeCC
Q 023643 256 CITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 256 ~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.++++++|.++++...++.|..||
T Consensus 234 gi~~d~~G~lwva~~~~~~v~~~d 257 (326)
T 2ghs_A 234 GSVCDAEGHIWNARWGEGAVDRYD 257 (326)
T ss_dssp EEEECTTSCEEEEEETTTEEEEEC
T ss_pred eeEECCCCCEEEEEeCCCEEEEEC
Confidence 899999998887776667787775
No 217
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.34 E-value=4.9e-11 Score=93.02 Aligned_cols=221 Identities=10% Similarity=0.007 Sum_probs=128.5
Q ss_pred cccceEEEEECCCCCCCCCEEEEecC-----CCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643 24 LTRTVFRTVWGPSKDGSPDTIVIASS-----DGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF 98 (279)
Q Consensus 24 ~~~~v~~~~~~~~~~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 98 (279)
+...+..+++++ +++++++-.. ++.|.+||+.++.....+.+. .....+...+..+++
T Consensus 65 ~~~~p~gv~~d~----~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~-------------~~~~~~~~~~~~v~v 127 (343)
T 2qe8_A 65 TFDTVLGIKSDG----NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLP-------------PPITLSNSFVNDLAV 127 (343)
T ss_dssp CCSCEEEEEECS----SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECC-------------TTTSCTTCCCCEEEE
T ss_pred ceeEeeEEEEcC----CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECC-------------hhhcccccccceEEE
Confidence 456899999999 7877666543 578999999874311111100 001123345688999
Q ss_pred cCCCCceEEEEee---CCCcEEEeecCCCccCcceeeeccCc-cc--ce-EE-----eecCCCCCccccCCCCCCceeEE
Q 023643 99 YGGNEDALLLSCG---DDGRICGWRWKEFTESKVPINLQGNH-VK--PV-LD-----LVNHQHKGPWGALSPVPENNAIA 166 (279)
Q Consensus 99 ~~~~~~~~l~s~~---~dg~i~iw~~~~~~~~~~~~~~~~~~-~~--~~-~~-----~~~~~~~~~~~~~~~~~~i~~~~ 166 (279)
.|++. ..+++.. .++.|.+||+.+.. ......++. .. +. .. +......+... .....+..++
T Consensus 128 d~~~g-~~yvtd~~~~~~~~i~v~d~~~g~---~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~--~~~~~~~gia 201 (343)
T 2qe8_A 128 DLIHN-FVYISDPAPDDKAALIRVDLQTGL---AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVI--RPHLGVNGIV 201 (343)
T ss_dssp ETTTT-EEEEEECCSGGGCEEEEEETTTCC---EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEE--CCCCCEEEEE
T ss_pred ecCCC-EEEEEcCccCCCCeEEEEECCCCC---EEEEecCCCcccccccceeECCEEEEeccCCCcee--ceecccceeE
Confidence 98654 2455555 68899999986432 111111100 00 00 00 00000000000 0012368899
Q ss_pred EcCCCCeEEEecCCC-eEEEEecC---CCc-----EEE--EeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce
Q 023643 167 VDPQGGAIFSAAGDS-CAYCWDVE---SSR-----IKM--VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC 235 (279)
Q Consensus 167 ~~~~~~~l~~~~~d~-~i~i~d~~---~~~-----~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~ 235 (279)
|+|+++.|+++...+ .+..++.. .+. ... ...++......++++++|+++++...++.|.+||..+++.
T Consensus 202 ~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~ 281 (343)
T 2qe8_A 202 LDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAY 281 (343)
T ss_dssp ECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE
T ss_pred eccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCE
Confidence 999999888876655 55555532 110 000 1112334566799999999999999999999999856764
Q ss_pred EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcce
Q 023643 236 IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNY 274 (279)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 274 (279)
..... ..+.....+++|++++.++++.+..+.
T Consensus 282 ~~~~~-------~~~~~~p~~va~~~~g~l~v~~~~~~~ 313 (343)
T 2qe8_A 282 KLLVT-------DEKLSWTDSFNFGSDGYLYFDCNQLHH 313 (343)
T ss_dssp EEEEE-------CGGGSCEEEEEECTTSCEEEEECCGGG
T ss_pred EEEEE-------CCceecCCeeEECCCCcEEEEeCcccc
Confidence 33331 112346789999999998888775543
No 218
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.32 E-value=1.5e-10 Score=98.75 Aligned_cols=198 Identities=13% Similarity=0.058 Sum_probs=118.1
Q ss_pred cccceEEEEECCCCCCCCCEEEE-----ecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643 24 LTRTVFRTVWGPSKDGSPDTIVI-----ASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF 98 (279)
Q Consensus 24 ~~~~v~~~~~~~~~~~~~~~l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 98 (279)
|...+..++||| |+++||- |+...+|++||+.++ +.+.. ..+......++|
T Consensus 127 ~~~~l~~~~~Sp----Dg~~lAy~~~~~G~~~~~i~v~dl~tg-------------------~~~~~-~~~~~k~~~~~W 182 (693)
T 3iuj_A 127 GTTALDQLSFSR----DGRILAYSLSLAGSDWREIHLMDVESK-------------------QPLET-PLKDVKFSGISW 182 (693)
T ss_dssp SCCEEEEEEECT----TSSEEEEEEECSSCCEEEEEEEETTTC-------------------SEEEE-EEEEEESCCCEE
T ss_pred CcEEEEEEEECC----CCCEEEEEEecCCCceEEEEEEECCCC-------------------CCCcc-ccCCceeccEEE
Confidence 445688899999 9999884 333357999999984 22111 001111246789
Q ss_pred cCCCCceEEEEeeCCCc-------------EEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeE
Q 023643 99 YGGNEDALLLSCGDDGR-------------ICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAI 165 (279)
Q Consensus 99 ~~~~~~~~l~s~~~dg~-------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 165 (279)
+ +++ .|+.++.+.. |++|++.+...... ..+......+ .....+
T Consensus 183 s-Dg~--~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~-~v~~~~~~~~-------------------~~~~~~ 239 (693)
T 3iuj_A 183 L-GNE--GFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDR-LVFGAIPAQH-------------------HRYVGA 239 (693)
T ss_dssp E-TTT--EEEEEESSCCC-------CCCCEEEEEETTSCGGGCE-EEESCSGGGC-------------------CSEEEE
T ss_pred e-CCC--EEEEEEecCcccccccccCCCcEEEEEECCCCcccce-EEEecCCCCC-------------------eEEEEE
Confidence 9 988 7777776643 88888764322111 1111110000 014678
Q ss_pred EEcCCCCeEEEec----CCCeEEEEecCCCc-EEEEeecCCcceEEEEEcCCCcE-EEEecCC---CeEEEEeCCCCce-
Q 023643 166 AVDPQGGAIFSAA----GDSCAYCWDVESSR-IKMVFKGHSDYLHCIVARNSTNQ-IVTGSED---GTARIWDCKSGKC- 235 (279)
Q Consensus 166 ~~~~~~~~l~~~~----~d~~i~i~d~~~~~-~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~d---~~i~vwd~~~~~~- 235 (279)
.|+|++++|+... ....|+++|+.++. ....+..+....... +++++.. ++....+ +.|..+|+.++..
T Consensus 240 ~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~ 318 (693)
T 3iuj_A 240 TVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA 318 (693)
T ss_dssp EECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG
T ss_pred EEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc
Confidence 8999999875533 23589999998763 344555565555554 5565554 4444443 6799999987654
Q ss_pred -EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC-cc--eEEeCC
Q 023643 236 -IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA-TN--YVILFS 279 (279)
Q Consensus 236 -~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~wd 279 (279)
...+. .|...+. .|++++++|+.... ++ .|.+||
T Consensus 319 ~~~~l~--------~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d 356 (693)
T 3iuj_A 319 HWRDLI--------PERQQVL--TVHSGSGYLFAEYMVDATARVEQFD 356 (693)
T ss_dssp GCEEEE--------CCCSSCE--EEEEETTEEEEEEEETTEEEEEEEC
T ss_pred ccEEEe--------cCCCCEE--EEEEECCEEEEEEEECCeeEEEEEE
Confidence 23342 2333333 78888888776654 33 566654
No 219
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.31 E-value=2.3e-10 Score=89.20 Aligned_cols=214 Identities=8% Similarity=-0.015 Sum_probs=125.2
Q ss_pred cceEEEEECCCCCCCCCEEEEec--CCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643 26 RTVFRTVWGPSKDGSPDTIVIAS--SDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE 103 (279)
Q Consensus 26 ~~v~~~~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 103 (279)
.....++++| +++++++.. .++.++||.+.++. .. .+.+ .......|-..+.++++.+++.
T Consensus 17 ~~p~~va~~~----~g~~~v~~~~~~~~~~~l~~~~~g~-~~--~~p~----------~~~~~~~~~~~p~gv~~d~~g~ 79 (343)
T 2qe8_A 17 LAPGNITLTP----DGRLFLSLHQFYQPEMQVAELTQDG-LI--PFPP----------QSGNAIITFDTVLGIKSDGNGI 79 (343)
T ss_dssp SCEEEEEECT----TSCEEEEECGGGCCSCSEEEEETTE-EE--ESCC----------CCSSCCCCCSCEEEEEECSSSE
T ss_pred CCcceEEECC----CCCEEEEeCCCCCCceEEEEECCCC-ee--cCCC----------cccCcccceeEeeEEEEcCCCc
Confidence 6789999999 899988863 23435666654321 10 0000 0011224566899999999975
Q ss_pred ceEEEEeeC-----CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe-
Q 023643 104 DALLLSCGD-----DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA- 177 (279)
Q Consensus 104 ~~~l~s~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~- 177 (279)
++++-.. ++.|.+||+.+.+ ....+.... .. ..+...+..++++|++..++.+
T Consensus 80 --L~v~D~g~~~~~~~~i~~~d~~tg~---~~~~~~~~~-----------~~-----~~~~~~~~~v~vd~~~g~~yvtd 138 (343)
T 2qe8_A 80 --VWMLDNGNQSKSVPKLVAWDTLNNQ---LSRVIYLPP-----------PI-----TLSNSFVNDLAVDLIHNFVYISD 138 (343)
T ss_dssp --EEEEECHHHHTSCCEEEEEETTTTE---EEEEEECCT-----------TT-----SCTTCCCCEEEEETTTTEEEEEE
T ss_pred --EEEEcCCCCcCCCCeEEEEECCCCe---EEEEEECCh-----------hh-----cccccccceEEEecCCCEEEEEc
Confidence 5554433 5789999976432 111111000 00 0001125789999865555444
Q ss_pred c---CCCeEEEEecCCCcEEEEeecCC-----------------------------cceEEEEEcCCCcEEEEecCCC-e
Q 023643 178 A---GDSCAYCWDVESSRIKMVFKGHS-----------------------------DYLHCIVARNSTNQIVTGSEDG-T 224 (279)
Q Consensus 178 ~---~d~~i~i~d~~~~~~~~~~~~~~-----------------------------~~i~~i~~~~~~~~l~~~~~d~-~ 224 (279)
. .++.|.+||+.+++..+.+.+|. ..+..|+++|+++.|+.+..++ .
T Consensus 139 ~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~ 218 (343)
T 2qe8_A 139 PAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTS 218 (343)
T ss_dssp CCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSE
T ss_pred CccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCe
Confidence 3 57899999999887776654321 1357899999998887776655 4
Q ss_pred EEEEeCC---CCceE-EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 225 ARIWDCK---SGKCI-KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 225 i~vwd~~---~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
|..++.. .+... ..+... ....++......++++++|.++++...++.|.+||
T Consensus 219 l~~~~~~~~~~~~~~~~~~~~~--~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 219 MYRIKSADLSNLQLTDAELGSK--IERYSEKPICDGISIDKDHNIYVGDLAHSAIGVIT 275 (343)
T ss_dssp EEEEEHHHHTCTTCCHHHHHTT--CEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred EEEEEHHHhcCCCCChhhhhcc--eEecccCCCCceEEECCCCCEEEEccCCCeEEEEE
Confidence 5444421 11100 000000 00012223456789999999999998899999885
No 220
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.30 E-value=8.3e-13 Score=103.95 Aligned_cols=179 Identities=9% Similarity=-0.008 Sum_probs=97.3
Q ss_pred CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.||.|+.||.++++. +..+.. +++.+..+.+ ++.++++++.||.|+.||..+++
T Consensus 17 ~dg~v~a~d~~tG~~--~W~~~~--~~~~s~p~~~----~g~~~v~~s~dg~l~a~d~~tG~------------------ 70 (369)
T 2hz6_A 17 LDGSLHAVSKRTGSI--KWTLKE--DPVLQVPTHV----EEPAFLPDPNDGSLYTLGSKNNE------------------ 70 (369)
T ss_dssp TTSEEEEEETTTCCE--EEEEEC--CCSCCCC---------CCEEECTTTCCEEEC-----C------------------
T ss_pred CCCEEEEEECCCCCE--EEEecC--CCceecceEc----CCCEEEEeCCCCEEEEEECCCCc------------------
Confidence 378999999887743 334443 4555555555 67788888999999999998743
Q ss_pred cccccccCCcc-CeE-EEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643 81 EPDGFLHGHDG-PAY-DVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP 158 (279)
Q Consensus 81 ~~~~~~~~h~~-~v~-~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (279)
.+..+..+.. .+. +..+. .+. .+++++.|+.|+.||.++++.. ..+...
T Consensus 71 -~~w~~~~~~~~~~~~sp~~~-~~~--~v~~g~~dg~v~a~D~~tG~~~---w~~~~~---------------------- 121 (369)
T 2hz6_A 71 -GLTKLPFTIPELVQASPCRS-SDG--ILYMGKKQDIWYVIDLLTGEKQ---QTLSSA---------------------- 121 (369)
T ss_dssp -CSEECSCCHHHHHTTCSCC--------CCCCEEEEEEEEECCC------------------------------------
T ss_pred -eeeeeeccCccccccCceEe-cCC--EEEEEeCCCEEEEEECCCCcEE---EEecCC----------------------
Confidence 2222221110 000 00011 233 6888889999999998754221 111110
Q ss_pred CCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCC---cEEEEecCCCeEEEEeCCCCce
Q 023643 159 VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNST---NQIVTGSEDGTARIWDCKSGKC 235 (279)
Q Consensus 159 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~---~~l~~~~~d~~i~vwd~~~~~~ 235 (279)
....++|++..+++++.++.|+.||.++++.+..+..+. ....++.++. ..+++++.||.|+.||.++|+.
T Consensus 122 ----~~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 122 ----FADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp ---------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred ----CcccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 012345677889999999999999999998776665321 1222333322 5677788999999999999998
Q ss_pred EEEec
Q 023643 236 IKVID 240 (279)
Q Consensus 236 ~~~~~ 240 (279)
+....
T Consensus 196 ~W~~~ 200 (369)
T 2hz6_A 196 LWIQN 200 (369)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 88763
No 221
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.29 E-value=1.5e-10 Score=90.28 Aligned_cols=230 Identities=11% Similarity=-0.039 Sum_probs=134.8
Q ss_pred ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEec----------CCCcEEEEeCCCCCcccccccCCcc
Q 023643 4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS----------SDGSITSYSIPSCISKLPLGLSNSK 73 (279)
Q Consensus 4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~ 73 (279)
.|.+.|.++.+ .+..+..-..+ .+.++| +++++.++. .++.|.+||+.+.
T Consensus 47 ~vsvID~~t~~--v~~~i~vG~~P--~i~~sp----Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~------------ 106 (368)
T 1mda_H 47 ENWVSCAGCGV--TLGHSLGAFLS--LAVAGH----SGSDFALASTSFARSAKGKRTDYVEVFDPVTF------------ 106 (368)
T ss_dssp EEEEEETTTTE--EEEEEEECTTC--EEEECT----TSSCEEEEEEEETTTTSSSEEEEEEEECTTTC------------
T ss_pred eEEEEECCCCe--EEEEEeCCCCC--ceEECC----CCCEEEEEcccccccccCCCCCEEEEEECCCC------------
Confidence 66788877764 35666555555 799999 888888875 3688999999984
Q ss_pred cceeeeccccccccCC-------ccCeEEEEecCCCCceEEEEeeC--CCcEEE--eecCCCccCcceee-------ecc
Q 023643 74 VQQLLGIEPDGFLHGH-------DGPAYDVKFYGGNEDALLLSCGD--DGRICG--WRWKEFTESKVPIN-------LQG 135 (279)
Q Consensus 74 ~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~l~s~~~--dg~i~i--w~~~~~~~~~~~~~-------~~~ 135 (279)
+.+..+.-. ......+.++|+++ +++.+.. +..+.+ +|+.+. ..+.. ..+
T Consensus 107 -------~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk--~lyVan~~~~~~v~V~~iD~~tv---~~i~v~~~~~~~p~g 174 (368)
T 1mda_H 107 -------LPIADIELPDAPRFSVGPRVHIIGNCASSA--CLLFFLFGSSAAAGLSVPGASDD---QLTKSASCFHIHPGA 174 (368)
T ss_dssp -------CEEEEEEETTSCSCCBSCCTTSEEECTTSS--CEEEEECSSSCEEEEEETTTEEE---EEEECSSCCCCEEEE
T ss_pred -------CEEEEEECCCccccccCCCcceEEEcCCCC--EEEEEccCCCCeEEEEEEchhhc---eEEECCCceEEccCC
Confidence 444444321 12345789999998 7777654 467888 997541 11100 000
Q ss_pred C---------cccceEEeecC---CCCCcc---ccC-CCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCc--EEEEe
Q 023643 136 N---------HVKPVLDLVNH---QHKGPW---GAL-SPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSR--IKMVF 197 (279)
Q Consensus 136 ~---------~~~~~~~~~~~---~~~~~~---~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~ 197 (279)
. ....+.++... .....+ ... ....+. . .+++..++..+. +.+.+.|+.+.. .+..+
T Consensus 175 ~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~ 249 (368)
T 1mda_H 175 AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAI 249 (368)
T ss_dssp TTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCC
T ss_pred CeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEE
Confidence 0 00000111000 000000 000 000111 3 555566555666 899999986532 23322
Q ss_pred ecC-------C---cceEEEEEcCCCcEEEEecC---------CCeEEEEeCCCCceEEEecCCccccccCcceeeeEEE
Q 023643 198 KGH-------S---DYLHCIVARNSTNQIVTGSE---------DGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCIT 258 (279)
Q Consensus 198 ~~~-------~---~~i~~i~~~~~~~~l~~~~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 258 (279)
... . .....++++|+++.++.+.. ++.+.++|+.+++.+..+.. . ....+++
T Consensus 250 ~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v--------g-~~p~gi~ 320 (368)
T 1mda_H 250 DGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN--------G-HDSDAII 320 (368)
T ss_dssp CSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE--------E-EEECEEE
T ss_pred EeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC--------C-CCcceEE
Confidence 110 0 11122689999887776532 23566999999999888842 1 2578999
Q ss_pred EcCCCC-EEEEEc-CcceEEeCC
Q 023643 259 LDASES-WLVRVR-ATNYVILFS 279 (279)
Q Consensus 259 ~~~~~~-~l~~~~-~d~~i~~wd 279 (279)
|+|||+ .+++.. .++.|.++|
T Consensus 321 ~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 321 AAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp ECCSSSCEEEEEETTTTEEEEEE
T ss_pred ECCCCCEEEEEccCCCCeEEEEE
Confidence 999997 455666 589998876
No 222
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.26 E-value=7.6e-09 Score=81.38 Aligned_cols=76 Identities=9% Similarity=0.027 Sum_probs=63.0
Q ss_pred eeEEEcCCCCeEEEecC----------CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCc-EEEEec-CCCeEEEEeC
Q 023643 163 NAIAVDPQGGAIFSAAG----------DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTN-QIVTGS-EDGTARIWDC 230 (279)
Q Consensus 163 ~~~~~~~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~-~d~~i~vwd~ 230 (279)
..+.++|+++.++++.. .+.|.++|+.+++.+..+.. .....+++|+|+|+ .++++. .++.|.++|+
T Consensus 270 ~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~ 348 (373)
T 2mad_H 270 QQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred EeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 34788999998888653 35799999999999988863 33578999999998 777777 5999999999
Q ss_pred CCCceEEEe
Q 023643 231 KSGKCIKVI 239 (279)
Q Consensus 231 ~~~~~~~~~ 239 (279)
.+++.+..+
T Consensus 349 ~t~~vv~~i 357 (373)
T 2mad_H 349 GAGDQDQST 357 (373)
T ss_pred CCCCEEeee
Confidence 999998884
No 223
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.25 E-value=1.1e-08 Score=75.68 Aligned_cols=207 Identities=10% Similarity=0.013 Sum_probs=130.9
Q ss_pred cceeeeeeccc--ceEEEEECCCCCCCCCEEEEecC--CCcEEEEeCCCCCcccccccCCcccceeeecccccccc-CCc
Q 023643 16 SILKEREILTR--TVFRTVWGPSKDGSPDTIVIASS--DGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLH-GHD 90 (279)
Q Consensus 16 ~~~~~~~~~~~--~v~~~~~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~ 90 (279)
+.+.++. |.. ....+.|+| ++.++++.+. ++.|+++|+.++ +.+..+. +..
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~----dg~Lyvstg~~~~s~v~~iD~~tg-------------------~v~~~i~l~~~ 65 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAE----NDTLFESTGLYGRSSVRQVALQTG-------------------KVENIHKMDDS 65 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECS----TTEEEEEECSTTTCEEEEEETTTC-------------------CEEEEEECCTT
T ss_pred eEEEEEE-CCCCCCcccEEEeC----CCeEEEECCCCCCCEEEEEECCCC-------------------CEEEEEecCCC
Confidence 4455554 443 357999999 7765555543 579999999984 3333332 111
Q ss_pred cCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC
Q 023643 91 GPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ 170 (279)
Q Consensus 91 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 170 (279)
.....+.+.. . .+.++.-.++.+.++|..+.+. ...+..... ....++++
T Consensus 66 ~fgeGi~~~g--~-~lyv~t~~~~~v~viD~~t~~v---~~~i~~g~~------------------------~g~glt~D 115 (266)
T 2iwa_A 66 YFGEGLTLLN--E-KLYQVVWLKNIGFIYDRRTLSN---IKNFTHQMK------------------------DGWGLATD 115 (266)
T ss_dssp CCEEEEEEET--T-EEEEEETTCSEEEEEETTTTEE---EEEEECCSS------------------------SCCEEEEC
T ss_pred cceEEEEEeC--C-EEEEEEecCCEEEEEECCCCcE---EEEEECCCC------------------------CeEEEEEC
Confidence 2233555553 3 2556666789999999765322 112211100 12245567
Q ss_pred CCeEEEecCCCeEEEEecCCCcEEEEeecCC-----cceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccc
Q 023643 171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHS-----DYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDK 245 (279)
Q Consensus 171 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 245 (279)
++.++++..++.|.++|..+.+.+..+.-.. ..+..+.|. ++..++....++.|.+.|..+++.+..+......
T Consensus 116 g~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~ 194 (266)
T 2iwa_A 116 GKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLR 194 (266)
T ss_dssp SSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHH
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcc
Confidence 8888887788999999999998888776321 236678887 7776677767899999999999999998642100
Q ss_pred -----cccCcceeeeEEEEcCCCCE-EEEEcCcceEEe
Q 023643 246 -----QLKGVISCVSCITLDASESW-LVRVRATNYVIL 277 (279)
Q Consensus 246 -----~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~ 277 (279)
.-........+++|+|+++. ++++...+.+.+
T Consensus 195 ~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~ 232 (266)
T 2iwa_A 195 KKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE 232 (266)
T ss_dssp HHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred cccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence 00001135689999999765 555555666654
No 224
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.19 E-value=2.1e-08 Score=73.47 Aligned_cols=196 Identities=10% Similarity=0.061 Sum_probs=124.8
Q ss_pred ceeeeeecccc--eEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeE
Q 023643 17 ILKEREILTRT--VFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAY 94 (279)
Q Consensus 17 ~~~~~~~~~~~--v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 94 (279)
.+.++. |... ...+.|+. +.++.+.+.+|.|+++|+.++ +.+..+......-.
T Consensus 45 Vv~~~p-hd~~~ftqGL~~~~-----~~Ly~stG~~g~v~~iD~~Tg-------------------kv~~~~l~~~~Fge 99 (268)
T 3nok_A 45 IIREYP-HATNAFTQGLVFHQ-----GHFFESTGHQGTLRQLSLESA-------------------QPVWMERLGNIFAE 99 (268)
T ss_dssp EEEEEE-CCTTCCEEEEEEET-----TEEEEEETTTTEEEECCSSCS-------------------SCSEEEECTTCCEE
T ss_pred EEEEEc-CCCccccceEEEEC-----CEEEEEcCCCCEEEEEECCCC-------------------cEEeEECCCCccee
Confidence 344553 4332 46788865 577888888999999999984 33333311111123
Q ss_pred EEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeE
Q 023643 95 DVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAI 174 (279)
Q Consensus 95 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 174 (279)
.+.+..+ . +.+..-.++.+.++|.++.+.. ..+..... -..++ ++++.|
T Consensus 100 Git~~g~-~--Ly~ltw~~~~v~V~D~~Tl~~~---~ti~~~~e-----------------------GwGLt--~Dg~~L 148 (268)
T 3nok_A 100 GLASDGE-R--LYQLTWTEGLLFTWSGMPPQRE---RTTRYSGE-----------------------GWGLC--YWNGKL 148 (268)
T ss_dssp EEEECSS-C--EEEEESSSCEEEEEETTTTEEE---EEEECSSC-----------------------CCCEE--EETTEE
T ss_pred EEEEeCC-E--EEEEEccCCEEEEEECCcCcEE---EEEeCCCc-----------------------eeEEe--cCCCEE
Confidence 4555443 2 5556667899999998654222 12111000 12333 567788
Q ss_pred EEecCCCeEEEEecCCCcEEEEeecCC-----cceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCcccc---
Q 023643 175 FSAAGDSCAYCWDVESSRIKMVFKGHS-----DYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQ--- 246 (279)
Q Consensus 175 ~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~--- 246 (279)
+.+..++.|.++|..+.+.+..+.-.. ..+..+.|. +|+..+..-.+..|.+.|.++++.+..+.......
T Consensus 149 ~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~ 227 (268)
T 3nok_A 149 VRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVA 227 (268)
T ss_dssp EEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHT
T ss_pred EEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCccccc
Confidence 887779999999999999888776422 245667776 77767666678899999999999999987531100
Q ss_pred --ccCcceeeeEEEEcCCCC-EEEEE
Q 023643 247 --LKGVISCVSCITLDASES-WLVRV 269 (279)
Q Consensus 247 --~~~~~~~v~~~~~~~~~~-~l~~~ 269 (279)
......-.++||++|+++ +++||
T Consensus 228 ~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 228 GQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred ccccCcCCceEEEEEcCCCCEEEEeC
Confidence 011224678999999765 45555
No 225
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.18 E-value=3.6e-09 Score=90.22 Aligned_cols=216 Identities=9% Similarity=0.042 Sum_probs=123.4
Q ss_pred ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCC-------------cEEEEeCCCCCcccccccC
Q 023643 4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDG-------------SITSYSIPSCISKLPLGLS 70 (279)
Q Consensus 4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg-------------~i~iw~~~~~~~~~~~~~~ 70 (279)
+|++||+++++. +.. ..+......++|+ + ++.|+.++.+. .|++|++.+....
T Consensus 156 ~i~v~dl~tg~~--~~~-~~~~~k~~~~~Ws-D----g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~------ 221 (693)
T 3iuj_A 156 EIHLMDVESKQP--LET-PLKDVKFSGISWL-G----NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQED------ 221 (693)
T ss_dssp EEEEEETTTCSE--EEE-EEEEEESCCCEEE-T----TTEEEEEESSCCC-------CCCCEEEEEETTSCGGG------
T ss_pred EEEEEECCCCCC--Ccc-ccCCceeccEEEe-C----CCEEEEEEecCcccccccccCCCcEEEEEECCCCccc------
Confidence 588889887653 221 1111113566787 4 56666666553 3899998874211
Q ss_pred CcccceeeeccccccccC-CccCeEEEEecCCCCceEEE-EeeC---CCcEEEeecCCCccCcceeeeccCcccceEEee
Q 023643 71 NSKVQQLLGIEPDGFLHG-HDGPAYDVKFYGGNEDALLL-SCGD---DGRICGWRWKEFTESKVPINLQGNHVKPVLDLV 145 (279)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~-s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (279)
...+..... |.....++.|+|+++ +|+ +.+. ...|+++|+...... ...+.....
T Consensus 222 ---------~~~v~~~~~~~~~~~~~~~~SpDg~--~l~~~~~~~~~~~~i~~~d~~~~~~~--~~~l~~~~~------- 281 (693)
T 3iuj_A 222 ---------DRLVFGAIPAQHHRYVGATVTEDDR--FLLISAANSTSGNRLYVKDLSQENAP--LLTVQGDLD------- 281 (693)
T ss_dssp ---------CEEEESCSGGGCCSEEEEEECTTSC--EEEEEEESSSSCCEEEEEETTSTTCC--CEEEECSSS-------
T ss_pred ---------ceEEEecCCCCCeEEEEEEEcCCCC--EEEEEEccCCCCcEEEEEECCCCCCc--eEEEeCCCC-------
Confidence 011122222 444578899999998 554 3332 358899998643211 111111110
Q ss_pred cCCCCCccccCCCCCCceeEEEcCCCCeEEEecC----CCeEEEEecCCCcE--EEEeecCCcceEEEEEcCCCcEEEEe
Q 023643 146 NHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG----DSCAYCWDVESSRI--KMVFKGHSDYLHCIVARNSTNQIVTG 219 (279)
Q Consensus 146 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~ 219 (279)
..... +++++..|+..++ .+.|..+|+.++.. ...+..|...+. .|++++++|+..
T Consensus 282 ---------------~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~ 343 (693)
T 3iuj_A 282 ---------------ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAE 343 (693)
T ss_dssp ---------------SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEE
T ss_pred ---------------ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEE
Confidence 01222 5666665554443 36899999987654 234555665555 888988887766
Q ss_pred cCCC---eEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc----ceEEeCC
Q 023643 220 SEDG---TARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT----NYVILFS 279 (279)
Q Consensus 220 ~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~~wd 279 (279)
..++ .|++||+..+ ....+.. .....+..+.+++++..|+....+ +.+..||
T Consensus 344 ~~~~g~~~l~~~d~~g~-~~~~l~~-------p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 344 YMVDATARVEQFDYEGK-RVREVAL-------PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp EEETTEEEEEEECTTSC-EEEEECC-------SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred EEECCeeEEEEEECCCC-eeEEeec-------CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence 5544 6899998744 4455532 223456777888888766654333 5666654
No 226
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.15 E-value=2.9e-08 Score=72.77 Aligned_cols=198 Identities=12% Similarity=0.029 Sum_probs=124.1
Q ss_pred cceeeeeecccc--eEEEEECCCCCCCCCEEEEecCCC--cEEEEeCCCCCcccccccCCcccceeeeccccccccCCcc
Q 023643 16 SILKEREILTRT--VFRTVWGPSKDGSPDTIVIASSDG--SITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDG 91 (279)
Q Consensus 16 ~~~~~~~~~~~~--v~~~~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 91 (279)
+.++++. |... ...|.|+. +.++.+.+.+| .|+++|+.++ +.+..+.-...
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~~-----~~LyestG~~g~S~v~~vD~~Tg-------------------kv~~~~~l~~~ 86 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYRN-----GYFYESTGLNGRSSIRKVDIESG-------------------KTLQQIELGKR 86 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEET-----TEEEEEEEETTEEEEEEECTTTC-------------------CEEEEEECCTT
T ss_pred EEEEEec-CCCCcccceEEEEC-----CEEEEECCCCCCceEEEEECCCC-------------------cEEEEEecCCc
Confidence 4455553 4433 47788874 46777777766 8999999984 33333322111
Q ss_pred -CeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC
Q 023643 92 -PAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ 170 (279)
Q Consensus 92 -~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 170 (279)
.-..+... +. .+.+..-.++.+.++|.++.+. ...+.... ....++++
T Consensus 87 ~FgeGit~~--g~-~ly~ltw~~~~v~v~D~~t~~~---~~ti~~~~-------------------------eG~glt~d 135 (262)
T 3nol_A 87 YFGEGISDW--KD-KIVGLTWKNGLGFVWNIRNLRQ---VRSFNYDG-------------------------EGWGLTHN 135 (262)
T ss_dssp CCEEEEEEE--TT-EEEEEESSSSEEEEEETTTCCE---EEEEECSS-------------------------CCCCEEEC
T ss_pred cceeEEEEe--CC-EEEEEEeeCCEEEEEECccCcE---EEEEECCC-------------------------CceEEecC
Confidence 12334444 33 2455555689999999865422 22221110 11233456
Q ss_pred CCeEEEecCCCeEEEEecCCCcEEEEeecCC-----cceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccc
Q 023643 171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHS-----DYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDK 245 (279)
Q Consensus 171 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 245 (279)
+..|+.+..++.|.++|..+.+.+..+.-.. ..+..+.|. +|+..+..-.++.|.+.|.++++.+..+......
T Consensus 136 g~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~ 214 (262)
T 3nol_A 136 DQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGIL 214 (262)
T ss_dssp SSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGG
T ss_pred CCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCc
Confidence 7778877778899999999999888776421 334567775 6777777667899999999999999998754211
Q ss_pred c----ccCcceeeeEEEEcCCCCEEEEEc
Q 023643 246 Q----LKGVISCVSCITLDASESWLVRVR 270 (279)
Q Consensus 246 ~----~~~~~~~v~~~~~~~~~~~l~~~~ 270 (279)
. ......-.+++||+|+++.|+..+
T Consensus 215 ~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 215 AEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp GGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred cccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 0 011123568999999877665554
No 227
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.13 E-value=4e-08 Score=77.57 Aligned_cols=220 Identities=16% Similarity=0.098 Sum_probs=129.7
Q ss_pred CCceeeeccccc--cccceeeee---e----cccceEEEEECCCCCCCCCEEEEecCC------CcEEEEeCCCCCcccc
Q 023643 2 CGDSTNWDEDAY--RKSILKERE---I----LTRTVFRTVWGPSKDGSPDTIVIASSD------GSITSYSIPSCISKLP 66 (279)
Q Consensus 2 dG~v~iw~~~~~--~~~~~~~~~---~----~~~~v~~~~~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~~ 66 (279)
++.|.++|.++. +.+..+..+ . -...-..+...| ++ +++++..+ |.|.++|..+
T Consensus 105 s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p----dG-i~Vs~~g~~~g~~~g~v~vlD~~T------ 173 (462)
T 2ece_A 105 SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP----DA-IYISALGNEEGEGPGGILMLDHYS------ 173 (462)
T ss_dssp TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS----SC-EEEEEEEETTSCSCCEEEEECTTT------
T ss_pred CCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC----Ce-EEEEcCCCcCCCCCCeEEEEECCC------
Confidence 567889997643 223333332 0 111334567888 78 66665554 7899999998
Q ss_pred cccCCcccceeeeccccccccCC---ccCeEEEEecCCCCceEEEEee-------------------CCCcEEEeecCCC
Q 023643 67 LGLSNSKVQQLLGIEPDGFLHGH---DGPAYDVKFYGGNEDALLLSCG-------------------DDGRICGWRWKEF 124 (279)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~~l~s~~-------------------~dg~i~iw~~~~~ 124 (279)
.+.+..+..- ...-..+.|+|+++ .+++.. .+.+|.+||+.+.
T Consensus 174 -------------~~v~~~~~~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~ 238 (462)
T 2ece_A 174 -------------FEPLGKWEIDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR 238 (462)
T ss_dssp -------------CCEEEECCSBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred -------------CeEEEEEccCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence 3444444321 12234678899998 888774 4789999998753
Q ss_pred ccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEE--cCCCCeEEEec------CCCeEEEEecCCCcE--E
Q 023643 125 TESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAV--DPQGGAIFSAA------GDSCAYCWDVESSRI--K 194 (279)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~------~d~~i~i~d~~~~~~--~ 194 (279)
+....+....... ....+.| +|+++++++++ .+++|.+|....++. +
T Consensus 239 ---k~~~tI~vg~~g~--------------------~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~ 295 (462)
T 2ece_A 239 ---KRIHSLTLGEENR--------------------MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAE 295 (462)
T ss_dssp ---EEEEEEESCTTEE--------------------EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEE
T ss_pred ---cEeeEEecCCCCC--------------------ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEE
Confidence 2222222110000 0234445 99999888776 466887766554421 1
Q ss_pred EEe--ecC----------------CcceEEEEEcCCCcEEEEec-CCCeEEEEeCCC---CceEEEecCCccccccCc--
Q 023643 195 MVF--KGH----------------SDYLHCIVARNSTNQIVTGS-EDGTARIWDCKS---GKCIKVIDPVKDKQLKGV-- 250 (279)
Q Consensus 195 ~~~--~~~----------------~~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~~---~~~~~~~~~~~~~~~~~~-- 250 (279)
..+ ... ......|.++|||++|.++. ..+.|.+||+.. .+.+..+...-......|
T Consensus 296 ~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~ 375 (462)
T 2ece_A 296 KVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPA 375 (462)
T ss_dssp EEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTT
T ss_pred EEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccc
Confidence 111 110 23467899999999876665 478999999853 355555532100000000
Q ss_pred ----ceeeeEEEEcCCCCEEEEEc
Q 023643 251 ----ISCVSCITLDASESWLVRVR 270 (279)
Q Consensus 251 ----~~~v~~~~~~~~~~~l~~~~ 270 (279)
...-..++++|||++|+++.
T Consensus 376 G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 376 GHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp SCCCCSCCCCEEECTTSSEEEEEC
T ss_pred cccCCCCCCEEEEcCCCCEEEEEc
Confidence 01247789999999999887
No 228
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.13 E-value=9.6e-09 Score=80.26 Aligned_cols=191 Identities=7% Similarity=-0.041 Sum_probs=117.4
Q ss_pred CCCEEEEecC-----CCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEee---
Q 023643 40 SPDTIVIASS-----DGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCG--- 111 (279)
Q Consensus 40 ~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~--- 111 (279)
+++.+.+... ++.|.+.|..+ .+.+..+..-..+ . +.++|+++ +++.+.
T Consensus 43 d~~~vyV~~~~~~~~~~~V~ViD~~t-------------------~~v~~~I~vG~~P-~-va~spDG~--~lyVan~~~ 99 (386)
T 3sjl_D 43 DARRVYVNDPAHFAAVTQQFVIDGEA-------------------GRVIGMIDGGFLP-N-PVVADDGS--FIAHASTVF 99 (386)
T ss_dssp CTTEEEEEECGGGCSSEEEEEEETTT-------------------TEEEEEEEECSSC-E-EEECTTSS--CEEEEEEEE
T ss_pred CCCEEEEEcCcccCCCCEEEEEECCC-------------------CeEEEEEECCCCC-c-EEECCCCC--EEEEEcccc
Confidence 8888877754 67999999998 4555555543444 4 99999998 665554
Q ss_pred -------CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC--CCe
Q 023643 112 -------DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG--DSC 182 (279)
Q Consensus 112 -------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~ 182 (279)
.++.|.+||..+.+....+....+.... ... ....++++|+|++++++.. ++.
T Consensus 100 ~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~--------~g~----------~P~~~a~spDGk~lyVan~~~~~~ 161 (386)
T 3sjl_D 100 SRIARGERTDYVEVFDPVTLLPTADIELPDAPRFL--------VGT----------YPWMTSLTPDGKTLLFYQFSPAPA 161 (386)
T ss_dssp EETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC--------BSC----------CGGGEEECTTSSEEEEEECSSSCE
T ss_pred cccccCCCCCEEEEEECCCCeEEEEEECCCccccc--------cCC----------CCceEEEcCCCCEEEEEEcCCCCe
Confidence 4678999998754322222111100000 000 1367899999999988763 689
Q ss_pred EEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC-CceEEEecCCccccccCcceee-eEEEEc
Q 023643 183 AYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS-GKCIKVIDPVKDKQLKGVISCV-SCITLD 260 (279)
Q Consensus 183 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v-~~~~~~ 260 (279)
|.++|+.+++.+.++..... ...+....+.+++.+.||.+.+.++.+ ++........ +..-..++ ....|.
T Consensus 162 VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~----~~~~~~~~~~~~~~~ 234 (386)
T 3sjl_D 162 VGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV----FHPEDEFLINHPAYS 234 (386)
T ss_dssp EEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC----CSCTTSCBCSCCEEE
T ss_pred EEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecce----eccccccccccceeE
Confidence 99999999999998864321 223333456777888899999999876 5553322100 01111111 123554
Q ss_pred -CCCCEEEEEcCcceEEeCC
Q 023643 261 -ASESWLVRVRATNYVILFS 279 (279)
Q Consensus 261 -~~~~~l~~~~~d~~i~~wd 279 (279)
++|++++ .+.+|.|.+.|
T Consensus 235 ~~dG~~~~-vs~~g~V~v~d 253 (386)
T 3sjl_D 235 QKAGRLVW-PTYTGKIHQID 253 (386)
T ss_dssp TTTTEEEE-EBTTSEEEEEE
T ss_pred cCCCcEEE-EeCCCEEEEEE
Confidence 5776554 44467776653
No 229
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.11 E-value=3.7e-07 Score=68.38 Aligned_cols=216 Identities=11% Similarity=0.047 Sum_probs=122.9
Q ss_pred ceeeeccccccccc---eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643 4 DSTNWDEDAYRKSI---LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 4 ~v~iw~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
.|+.+++++..... ...+.........++|+|. ++.++++-..++.|..+++....
T Consensus 11 ~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~---~~~ly~~d~~~~~I~~~~~~g~~------------------ 69 (267)
T 1npe_A 11 KIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCV---DKVVYWTDISEPSIGRASLHGGE------------------ 69 (267)
T ss_dssp EEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETT---TTEEEEEETTTTEEEEEESSSCC------------------
T ss_pred eEEEEEecCcccccccceeeecCCCCcEEEEEEecC---CCEEEEEECCCCEEEEEecCCCC------------------
Confidence 46666666543211 1112222345789999982 34455566677899999987521
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
....+.........+++.|++. .++++-...+.|.+++++.. ..... .... . .
T Consensus 70 -~~~~~~~~~~~p~~ia~d~~~~-~lyv~d~~~~~I~~~~~~g~-~~~~~--~~~~------------~----------~ 122 (267)
T 1npe_A 70 -PTTIIRQDLGSPEGIALDHLGR-TIFWTDSQLDRIEVAKMDGT-QRRVL--FDTG------------L----------V 122 (267)
T ss_dssp -CEEEECTTCCCEEEEEEETTTT-EEEEEETTTTEEEEEETTSC-SCEEE--ECSS------------C----------S
T ss_pred -cEEEEECCCCCccEEEEEecCC-eEEEEECCCCEEEEEEcCCC-CEEEE--EECC------------C----------C
Confidence 1111112224578899998755 25555566788999987521 11110 0000 0 0
Q ss_pred CceeEEEcCCCCeEEEecC---CCeEEEEecCCCcEEEEe-ecCCcceEEEEEcCCCc-EEEEecCCCeEEEEeCCCCce
Q 023643 161 ENNAIAVDPQGGAIFSAAG---DSCAYCWDVESSRIKMVF-KGHSDYLHCIVARNSTN-QIVTGSEDGTARIWDCKSGKC 235 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~-~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~ 235 (279)
....++++|++..|+.+.. .+.|..+++... ....+ .........++++|++. .+++-...+.|.++|+.....
T Consensus 123 ~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~ 201 (267)
T 1npe_A 123 NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR 201 (267)
T ss_dssp SEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE
T ss_pred CccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce
Confidence 2478999997666665553 368888887643 22222 22334678999999755 456666778999999875443
Q ss_pred EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 236 IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
...+. .. .....++.. .+.++++....+.|..+
T Consensus 202 ~~~~~--------~~-~~P~gi~~d-~~~lyva~~~~~~v~~~ 234 (267)
T 1npe_A 202 RKVLE--------GL-QYPFAVTSY-GKNLYYTDWKTNSVIAM 234 (267)
T ss_dssp EEEEE--------CC-CSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred EEEec--------CC-CCceEEEEe-CCEEEEEECCCCeEEEE
Confidence 33331 11 122455554 34444454455667654
No 230
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.10 E-value=1e-07 Score=69.30 Aligned_cols=198 Identities=11% Similarity=-0.007 Sum_probs=123.9
Q ss_pred cceeeeeeccc--ceEEEEECCCCCCCCCEEEEecCCC--cEEEEeCCCCCcccccccCCcccceeeeccccccccCCcc
Q 023643 16 SILKEREILTR--TVFRTVWGPSKDGSPDTIVIASSDG--SITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDG 91 (279)
Q Consensus 16 ~~~~~~~~~~~--~v~~~~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 91 (279)
+++.++ .|.. -...+.|++ +.++.+.+.+| .|+.+|+.++ +.+..+.-...
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-----~~LyestG~~g~S~v~~vD~~tg-------------------kv~~~~~l~~~ 64 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-----GHLYESTGETGRSSVRKVDLETG-------------------RILQRAEVPPP 64 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-----TEEEEEECCTTSCEEEEEETTTC-------------------CEEEEEECCTT
T ss_pred EEEEEc-CCCCccccccEEEEC-----CEEEEECCCCCCceEEEEECCCC-------------------CEEEEEeCCCC
Confidence 445566 4543 366889986 46666666654 8999999984 33333322111
Q ss_pred -CeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC
Q 023643 92 -PAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ 170 (279)
Q Consensus 92 -~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 170 (279)
.-..+.... . .+.+..-.++.+.++|.++.+. ...+..... -..+ .++
T Consensus 65 ~fgeGi~~~~--~-~ly~ltw~~~~v~v~D~~tl~~---~~ti~~~~~-----------------------Gwgl--t~d 113 (243)
T 3mbr_X 65 YFGAGIVAWR--D-RLIQLTWRNHEGFVYDLATLTP---RARFRYPGE-----------------------GWAL--TSD 113 (243)
T ss_dssp CCEEEEEEET--T-EEEEEESSSSEEEEEETTTTEE---EEEEECSSC-----------------------CCEE--EEC
T ss_pred cceeEEEEeC--C-EEEEEEeeCCEEEEEECCcCcE---EEEEeCCCC-----------------------ceEE--eeC
Confidence 123344443 3 2555566789999999865422 111111100 1233 456
Q ss_pred CCeEEEecCCCeEEEEecCCCcEEEEeecCC-----cceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccc
Q 023643 171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHS-----DYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDK 245 (279)
Q Consensus 171 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 245 (279)
+..|+++..++.|.++|..+.+.+..+.-.. ..+..+.+. +|+.++..-.+..|.+.|.++++.+..+......
T Consensus 114 g~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~ 192 (243)
T 3mbr_X 114 DSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALV 192 (243)
T ss_dssp SSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGS
T ss_pred CCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCc
Confidence 7777777778999999999999888776422 245566665 6776766667889999999999999998744211
Q ss_pred cc-----cCcceeeeEEEEcCCCCEEEEEc
Q 023643 246 QL-----KGVISCVSCITLDASESWLVRVR 270 (279)
Q Consensus 246 ~~-----~~~~~~v~~~~~~~~~~~l~~~~ 270 (279)
.- .....-.++||++|+++.|+..+
T Consensus 193 ~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 193 PDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred cccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 00 01224578999999766555443
No 231
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.10 E-value=1.2e-08 Score=86.52 Aligned_cols=79 Identities=11% Similarity=0.078 Sum_probs=58.5
Q ss_pred CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEc
Q 023643 181 SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLD 260 (279)
Q Consensus 181 ~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 260 (279)
+.|..||+.+++.+..++. ..++....+...+..++.++.||.+++||.++++.+..+... +...-.-+.|.
T Consensus 457 g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~-------~~~~~~p~~y~ 528 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG-------TGVVAAPSTYM 528 (677)
T ss_dssp EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS-------SCCCSCCEEEE
T ss_pred cEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC-------CCcccCCEEEE
Confidence 7899999999999988763 334444556667888888999999999999999999998643 22222334566
Q ss_pred CCCCEEE
Q 023643 261 ASESWLV 267 (279)
Q Consensus 261 ~~~~~l~ 267 (279)
++|+.++
T Consensus 529 ~~G~~~v 535 (677)
T 1kb0_A 529 VDGRQYV 535 (677)
T ss_dssp ETTEEEE
T ss_pred eCCEEEE
Confidence 7776444
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.08 E-value=2e-08 Score=85.36 Aligned_cols=80 Identities=13% Similarity=0.101 Sum_probs=58.5
Q ss_pred CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEE
Q 023643 180 DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITL 259 (279)
Q Consensus 180 d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 259 (279)
+|.|+.||+.+++.+..++.+.. ...-.+...+.+++.++.||.|+.||.++|+.+..++... ...-.-+.|
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~-------~~~~~p~ty 525 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAAS-------GVMAAPVTY 525 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS-------CCCSCCEEE
T ss_pred ceeEEEEECCCCCeEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCC-------CcccCceEE
Confidence 37899999999999988875542 2333455678899999999999999999999998885432 112233566
Q ss_pred cCCCCEEE
Q 023643 260 DASESWLV 267 (279)
Q Consensus 260 ~~~~~~l~ 267 (279)
..+|+.++
T Consensus 526 ~~~G~qyv 533 (689)
T 1yiq_A 526 SVDGEQYV 533 (689)
T ss_dssp EETTEEEE
T ss_pred EECCEEEE
Confidence 77876443
No 233
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.08 E-value=9.8e-09 Score=83.77 Aligned_cols=106 Identities=16% Similarity=0.117 Sum_probs=76.8
Q ss_pred ceeEEEcCCCCeEEEec-CCCeEEEEecCCCc------------EEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEE
Q 023643 162 NNAIAVDPQGGAIFSAA-GDSCAYCWDVESSR------------IKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIW 228 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~------------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vw 228 (279)
..++.++|||+++++++ .+..|.++|+.+.+ ...... -....+.++|+|+|...++.-.|++|.+|
T Consensus 279 PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kw 357 (595)
T 1fwx_A 279 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKW 357 (595)
T ss_dssp CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEE
T ss_pred ceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEE
Confidence 57899999999776655 57899999998653 334443 23457899999999666778889999999
Q ss_pred eCCC----------CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643 229 DCKS----------GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA 271 (279)
Q Consensus 229 d~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 271 (279)
|+.. .+.+.++..+-+ .+|...-.++.++|||++|++...
T Consensus 358 di~~a~~~~~g~~~~~vi~kidV~yq---pGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 358 NIEDAIRAYAGEKVDPIKDKLDVHYQ---PGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EHHHHHHHHHTCSCCCEEEEEECSSC---EEEEEETTTTSTTCCSSEEEEEES
T ss_pred EhhHhhhhhcccccceeEEEeecccc---cccceeccceEeCCCCCEEEEcCC
Confidence 9977 556667654321 144444445567899999998743
No 234
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.00 E-value=6.4e-08 Score=76.45 Aligned_cols=200 Identities=12% Similarity=0.013 Sum_probs=119.3
Q ss_pred CCCEE-EEecCCCcEEEEeCCCCCcccccccCCcccceeeecccccccc------C-CccCeEEEEecCCCCceEEEEee
Q 023643 40 SPDTI-VIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLH------G-HDGPAYDVKFYGGNEDALLLSCG 111 (279)
Q Consensus 40 ~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-h~~~v~~~~~~~~~~~~~l~s~~ 111 (279)
++++| +.+..+++|.++|+.+..... +...++. . -......+...|++ +++++.
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~p---------------~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG---i~Vs~~ 155 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPREP---------------KIIKVIEPEEVKKVSGYSRLHTVHCGPDA---IYISAL 155 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTSC---------------EEEEEECHHHHHHHHCEEEEEEEEECSSC---EEEEEE
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCCc---------------eeeeeechhhcccccCCCcccceeECCCe---EEEEcC
Confidence 55555 556788999999997532111 1111111 0 11133456677887 555655
Q ss_pred CC------CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec-------
Q 023643 112 DD------GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA------- 178 (279)
Q Consensus 112 ~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------- 178 (279)
.+ |.|.+.|.++.+ ........... ..--..+-|+|+++.+++..
T Consensus 156 g~~~g~~~g~v~vlD~~T~~---v~~~~~~~~~~-------------------~~~~Yd~~~~p~~~~mvsS~wg~p~~~ 213 (462)
T 2ece_A 156 GNEEGEGPGGILMLDHYSFE---PLGKWEIDRGD-------------------QYLAYDFWWNLPNEVLVSSEWAVPNTI 213 (462)
T ss_dssp EETTSCSCCEEEEECTTTCC---EEEECCSBCTT-------------------CCCCCCEEEETTTTEEEECBCCCHHHH
T ss_pred CCcCCCCCCeEEEEECCCCe---EEEEEccCCCC-------------------ccccceEEECCCCCEEEEccCcCcccc
Confidence 55 789999976532 22222111000 00124578899999888874
Q ss_pred ------------CCCeEEEEecCCCcEEEEeecC--CcceEEEEE--cCCCcEEEEec------CCCeEEEEeCCCCce-
Q 023643 179 ------------GDSCAYCWDVESSRIKMVFKGH--SDYLHCIVA--RNSTNQIVTGS------EDGTARIWDCKSGKC- 235 (279)
Q Consensus 179 ------------~d~~i~i~d~~~~~~~~~~~~~--~~~i~~i~~--~~~~~~l~~~~------~d~~i~vwd~~~~~~- 235 (279)
...+|.+||+.+++.+.++... ......+.| +|+++++..++ .+++|.+|....++.
T Consensus 214 ~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~ 293 (462)
T 2ece_A 214 EDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN 293 (462)
T ss_dssp TTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE
T ss_pred ccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCcee
Confidence 3689999999999888887653 134556666 99999877766 567888877655432
Q ss_pred -EEEecCCccc---cc-------cCcceeeeEEEEcCCCCEEEEEcC-cceEEeCC
Q 023643 236 -IKVIDPVKDK---QL-------KGVISCVSCITLDASESWLVRVRA-TNYVILFS 279 (279)
Q Consensus 236 -~~~~~~~~~~---~~-------~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd 279 (279)
.+.+...... .+ .+-......+.++|||++|.++.. .+.|.+||
T Consensus 294 ~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~Vavfd 349 (462)
T 2ece_A 294 AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYD 349 (462)
T ss_dssp EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 2222111100 00 000235788999999999887754 67788764
No 235
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.97 E-value=2.1e-06 Score=64.25 Aligned_cols=201 Identities=11% Similarity=-0.001 Sum_probs=117.8
Q ss_pred CceeeeccccccccceeeeeecccceEEEEECCCCCCCC-CEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSP-DTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
+.|..+++++.... ............++++| ++ .++++-...+.|.+++++...
T Consensus 58 ~~I~~~~~~g~~~~--~~~~~~~~~p~~ia~d~----~~~~lyv~d~~~~~I~~~~~~g~~------------------- 112 (267)
T 1npe_A 58 PSIGRASLHGGEPT--TIIRQDLGSPEGIALDH----LGRTIFWTDSQLDRIEVAKMDGTQ------------------- 112 (267)
T ss_dssp TEEEEEESSSCCCE--EEECTTCCCEEEEEEET----TTTEEEEEETTTTEEEEEETTSCS-------------------
T ss_pred CEEEEEecCCCCcE--EEEECCCCCccEEEEEe----cCCeEEEEECCCCEEEEEEcCCCC-------------------
Confidence 45666666654321 11111224678899998 54 455555667889999987421
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeC---CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGD---DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP 158 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (279)
..............+++.|++. .|..+.. .+.|..++++.. ...... ...
T Consensus 113 ~~~~~~~~~~~P~~i~vd~~~g--~lyv~~~~~~~~~I~~~~~dg~-~~~~~~--~~~---------------------- 165 (267)
T 1npe_A 113 RRVLFDTGLVNPRGIVTDPVRG--NLYWTDWNRDNPKIETSHMDGT-NRRILA--QDN---------------------- 165 (267)
T ss_dssp CEEEECSSCSSEEEEEEETTTT--EEEEEECCSSSCEEEEEETTSC-CCEEEE--CTT----------------------
T ss_pred EEEEEECCCCCccEEEEeeCCC--EEEEEECCCCCcEEEEEecCCC-CcEEEE--ECC----------------------
Confidence 0001111123468899999655 4444433 367877776421 111000 000
Q ss_pred CCCceeEEEcCCCCeEEEe-cCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEE
Q 023643 159 VPENNAIAVDPQGGAIFSA-AGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIK 237 (279)
Q Consensus 159 ~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~ 237 (279)
......++++|++..|+.+ ...+.|..+|+........+.. ......++.. .+..+++....+.|.++|..+++.+.
T Consensus 166 ~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~ 243 (267)
T 1npe_A 166 LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMD 243 (267)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceE
Confidence 0124789999987766554 4568999999975443333332 2334667664 45566666677899999999999988
Q ss_pred EecCCccccccCcceeeeEEEEcCCCC
Q 023643 238 VIDPVKDKQLKGVISCVSCITLDASES 264 (279)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~ 264 (279)
.+.. +......++++.|++.
T Consensus 244 ~i~~-------g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 244 TFHP-------HKQTRLYGITIALSQC 263 (267)
T ss_dssp EECC-------SSCCCCCCEEEECSCC
T ss_pred EEcc-------ccccccceeeecCccC
Confidence 8852 2112356778888764
No 236
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.96 E-value=1.9e-08 Score=85.27 Aligned_cols=104 Identities=13% Similarity=0.136 Sum_probs=75.6
Q ss_pred EcCCC---CeEEEecCCCeEEEEecCCCcEEEEeecCC-----------cce------------------------EEEE
Q 023643 167 VDPQG---GAIFSAAGDSCAYCWDVESSRIKMVFKGHS-----------DYL------------------------HCIV 208 (279)
Q Consensus 167 ~~~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----------~~i------------------------~~i~ 208 (279)
...+| ..+++++.+|.++++|..+++++..++... .++ ..++
T Consensus 320 ~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a 399 (677)
T 1kb0_A 320 IKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMS 399 (677)
T ss_dssp EEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCE
T ss_pred cccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCce
Confidence 33466 578999999999999999999987765221 011 1468
Q ss_pred EcCCCcEEEEecC-------------------------------------------CCeEEEEeCCCCceEEEecCCccc
Q 023643 209 ARNSTNQIVTGSE-------------------------------------------DGTARIWDCKSGKCIKVIDPVKDK 245 (279)
Q Consensus 209 ~~~~~~~l~~~~~-------------------------------------------d~~i~vwd~~~~~~~~~~~~~~~~ 245 (279)
++|+..++++... .|.|..||+.+++.+..+..
T Consensus 400 ~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---- 475 (677)
T 1kb0_A 400 FNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---- 475 (677)
T ss_dssp EETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE----
T ss_pred EcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC----
Confidence 8898777766432 27899999999998888732
Q ss_pred cccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 246 QLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 246 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
..++....+...+..++.++.||.+++||
T Consensus 476 -----~~~~~~g~~~~~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 476 -----VSPWNGGTLTTAGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp -----SSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred -----CCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence 22334445666778888899999999886
No 237
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.96 E-value=5.3e-08 Score=77.40 Aligned_cols=190 Identities=8% Similarity=-0.052 Sum_probs=114.5
Q ss_pred CCCEEEEecC-C----CcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEee---
Q 023643 40 SPDTIVIASS-D----GSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCG--- 111 (279)
Q Consensus 40 ~~~~l~~~~~-d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~--- 111 (279)
++.++.+... + +.|.++|..+ .+.+..+..-..+ .+.++|+++ +++.+.
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t-------------------~~vv~~I~vG~~P--gia~SpDgk--~lyVan~~~ 139 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGST-------------------GRILGMTDGGFLP--HPVAAEDGS--FFAQASTVF 139 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTT-------------------TEEEEEEEECSSC--EEEECTTSS--CEEEEEEEE
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCC-------------------CEEEEEEECCCCC--ceEECCCCC--EEEEEeccc
Confidence 6666655543 2 6999999998 4555555533445 899999998 665554
Q ss_pred -------CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC--CCe
Q 023643 112 -------DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG--DSC 182 (279)
Q Consensus 112 -------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~ 182 (279)
.++.|.++|..+.+....+......... .. .....+.++|++++++++.. ++.
T Consensus 140 ~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~--------~g----------~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 140 ERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL--------VG----------TYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC--------BS----------CCGGGSEECTTSSEEEEEECSSSCE
T ss_pred cccccCCCCCEEEEEECCCCcEEEEEECCCccccc--------cC----------CCcceEEEcCCCCEEEEEecCCCCe
Confidence 4678999998754322211110000000 00 01357799999999998764 578
Q ss_pred EEEEecCCCcEEEEeecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCccee-eeEEEEc
Q 023643 183 AYCWDVESSRIKMVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISC-VSCITLD 260 (279)
Q Consensus 183 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~ 260 (279)
|.+.|+.+++.+..+..... ....|+ .+.+++.+.||.+.+.++.+++...... . .+.....+ ...+.|.
T Consensus 202 VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~-~---~~~v~~~p~~~~~~~~ 273 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT-E---VFHTEDELLINHPAFS 273 (426)
T ss_dssp EEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC-C---CCSCTTSCBCSCCEEC
T ss_pred EEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee-e---eeccCCCceeeEeeec
Confidence 99999999999888864221 233343 3556667778888888886665543221 0 00011111 1234678
Q ss_pred CCCCEEEEEcCcceEEeC
Q 023643 261 ASESWLVRVRATNYVILF 278 (279)
Q Consensus 261 ~~~~~l~~~~~d~~i~~w 278 (279)
+++..++..+..+.+.+.
T Consensus 274 ~dg~~~~~~s~~g~V~Vi 291 (426)
T 3c75_H 274 LRSGRLVWPTYTGKIFQA 291 (426)
T ss_dssp TTTCEEEEEBTTSEEEEE
T ss_pred CCCCEEEEEeCCCcEEEE
Confidence 887766666666666554
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.94 E-value=6.7e-08 Score=74.59 Aligned_cols=202 Identities=10% Similarity=0.020 Sum_probs=114.3
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
+|.|..|| ...+ .+.....+...+.++...+ ++. |.+++.+ |..+|. + ++
T Consensus 39 ~~~l~~~d-~~g~--~~~~~~~~~~~~~~~~~~~----~g~-l~v~t~~--l~~~d~-~-------------------g~ 88 (330)
T 3hxj_A 39 NKNLYAIN-TDGS--VKWFFKSGEIIECRPSIGK----DGT-IYFGSDK--VYAINP-D-------------------GT 88 (330)
T ss_dssp TTTTEEEC-TTSC--EEESSCGGGEEEECCEETT----TTE-ECCSSCE--EEEECC-C-------------------GG
T ss_pred CCEEEEEC-CCCc--EEEEEecCCCcccceEEec----CCc-EEEecCc--EEEECC-C-------------------Cc
Confidence 45667777 4332 2323333344456666666 554 5555555 888876 3 22
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
....+............. ++ .+..++.++.|..+|.+ .. ......... ..
T Consensus 89 ~~~~~~~~~~~~~~~~~~-~~---~l~v~t~~~~l~~~d~~-g~---~~~~~~~~~----------------------~~ 138 (330)
T 3hxj_A 89 EKWRFDTKKAIVSDFTIF-ED---ILYVTSMDGHLYAINTD-GT---EKWRFKTKK----------------------AI 138 (330)
T ss_dssp GGGGSCC-----CCEEEE-TT---EEEEECTTSEEEEECTT-SC---EEEEEECSS----------------------CC
T ss_pred EEEEEECCCCcccCceEE-CC---EEEEEecCCEEEEEcCC-CC---EEEEEcCCC----------------------ce
Confidence 222222222112222222 33 67788888999999864 21 111111100 01
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
+.++...+++. +++++.++.|..+|.. ++.+..+......+.++...+++..++.. +.|..+| .+++.+....
T Consensus 139 ~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~- 211 (330)
T 3hxj_A 139 YATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFY- 211 (330)
T ss_dssp CSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEEC-
T ss_pred eeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEc-
Confidence 34556666665 6667778899999988 87777776556666777777777755544 7788899 7777776663
Q ss_pred CccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 242 VKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
.....+.++..++++.+.+ ++.++.+..+
T Consensus 212 -------~~~~~~~~~~~~~~g~l~v-~t~~~gl~~~ 240 (330)
T 3hxj_A 212 -------AGYWTVTRPAISEDGTIYV-TSLDGHLYAI 240 (330)
T ss_dssp -------CSSCCCSCCEECTTSCEEE-EETTTEEEEE
T ss_pred -------cCCcceeceEECCCCeEEE-EcCCCeEEEE
Confidence 2234567777777776444 4445555443
No 239
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.93 E-value=1.3e-07 Score=72.95 Aligned_cols=204 Identities=12% Similarity=0.019 Sum_probs=117.2
Q ss_pred CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
+|.+..+|.+ .. .......+...+.++...+ ++. +..++.++.|..+|.. +..
T Consensus 116 ~~~l~~~d~~-g~--~~~~~~~~~~~~~~~~~~~----~g~-l~vgt~~~~l~~~d~~-g~~------------------ 168 (330)
T 3hxj_A 116 DGHLYAINTD-GT--EKWRFKTKKAIYATPIVSE----DGT-IYVGSNDNYLYAINPD-GTE------------------ 168 (330)
T ss_dssp TSEEEEECTT-SC--EEEEEECSSCCCSCCEECT----TSC-EEEECTTSEEEEECTT-SCE------------------
T ss_pred CCEEEEEcCC-CC--EEEEEcCCCceeeeeEEcC----CCE-EEEEcCCCEEEEECCC-CCE------------------
Confidence 4556666665 22 1222333333445555555 455 5556677788888876 321
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
...+......+.++...+++. +..++ +.|..+| .+. ......... ...
T Consensus 169 -~~~~~~~~~~~~~~~~d~~g~---l~v~t--~~l~~~d-~~g---~~~~~~~~~----------------------~~~ 216 (330)
T 3hxj_A 169 -KWRFKTNDAITSAASIGKDGT---IYFGS--DKVYAIN-PDG---TEKWNFYAG----------------------YWT 216 (330)
T ss_dssp -EEEEECSSCCCSCCEECTTCC---EEEES--SSEEEEC-TTS---CEEEEECCS----------------------SCC
T ss_pred -eEEEecCCCceeeeEEcCCCE---EEEEe--CEEEEEC-CCC---cEEEEEccC----------------------Ccc
Confidence 111111223455556656664 44444 7788888 322 111111100 012
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
+.++...+++. +++++.++.|..+|. +++.+..+......+..+...+++ .|..++.+|.|..+|. +++.+..+.
T Consensus 217 ~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~- 291 (330)
T 3hxj_A 217 VTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFE- 291 (330)
T ss_dssp CSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEE-
T ss_pred eeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEE-
Confidence 56778887764 556777788888884 566666665444444455555555 5666778888999995 777776663
Q ss_pred CccccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643 242 VKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL 277 (279)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 277 (279)
.....+.++..++++. |..++.+|.+++
T Consensus 292 -------~~~~~~~~~~~d~~g~-l~~gt~~G~~~~ 319 (330)
T 3hxj_A 292 -------TGSWIIATPVIDENGT-IYFGTRNGKFYA 319 (330)
T ss_dssp -------CSSCCCSCCEECTTCC-EEEECTTSCEEE
T ss_pred -------cCCccccceEEcCCCE-EEEEcCCCeEEE
Confidence 2234567777878777 555778888775
No 240
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.92 E-value=4e-06 Score=61.75 Aligned_cols=214 Identities=14% Similarity=0.115 Sum_probs=127.6
Q ss_pred eeeecccceEEEEECCCCCCCCC-EEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccc--cCCccCeEEE
Q 023643 20 EREILTRTVFRTVWGPSKDGSPD-TIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFL--HGHDGPAYDV 96 (279)
Q Consensus 20 ~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~ 96 (279)
.+.+-...+..++|+| ++. ++++...++.|...|... +.++.+ .+. .....|
T Consensus 21 ~l~g~~~~lSGla~~~----~~~~L~aV~d~~~~I~~ld~~g--------------------~v~~~i~l~g~-~D~EGI 75 (255)
T 3qqz_A 21 EIAGITNNISSLTWSA----QSNTLFSTINKPAAIVEMTTNG--------------------DLIRTIPLDFV-KDLETI 75 (255)
T ss_dssp ECTTCCSCEEEEEEET----TTTEEEEEEETTEEEEEEETTC--------------------CEEEEEECSSC-SSEEEE
T ss_pred ECCCcccCcceeEEeC----CCCEEEEEECCCCeEEEEeCCC--------------------CEEEEEecCCC-CChHHe
Confidence 3444557899999999 544 555677788888888872 222222 222 447788
Q ss_pred EecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEE
Q 023643 97 KFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFS 176 (279)
Q Consensus 97 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 176 (279)
++.+++. ++++.-.++.+.++++............. + +............++|+|.++.|++
T Consensus 76 a~~~~g~--~~vs~E~~~~l~~~~v~~~~~i~~~~~~~---------~-------~~~~~~~N~g~EGLA~d~~~~~L~v 137 (255)
T 3qqz_A 76 EYIGDNQ--FVISDERDYAIYVISLTPNSEVKILKKIK---------I-------PLQESPTNCGFEGLAYSRQDHTFWF 137 (255)
T ss_dssp EECSTTE--EEEEETTTTEEEEEEECTTCCEEEEEEEE---------C-------CCSSCCCSSCCEEEEEETTTTEEEE
T ss_pred EEeCCCE--EEEEECCCCcEEEEEcCCCCeeeeeeeec---------c-------ccccccccCCcceEEEeCCCCEEEE
Confidence 8888775 66776677889999876432100000000 0 0000112234689999999987777
Q ss_pred ecCCCeEEEEecC---CCcEEEEee-------cCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCceEEEecCCcc-
Q 023643 177 AAGDSCAYCWDVE---SSRIKMVFK-------GHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKD- 244 (279)
Q Consensus 177 ~~~d~~i~i~d~~---~~~~~~~~~-------~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~- 244 (279)
+.......+|..+ ....+..+. .+...+..++++|. +++++.....+.|.++|.. ++.+..+.....
T Consensus 138 a~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~ 216 (255)
T 3qqz_A 138 FKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGS 216 (255)
T ss_dssp EEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTG
T ss_pred EECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCcc
Confidence 7665444444443 111122221 12235688999995 6777888888999999964 667666654320
Q ss_pred ccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 245 KQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 245 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
..+...-..-..|+|+++|+..++ ++-+.++.|
T Consensus 217 ~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 217 RGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp GGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred CCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 001111235678999999985555 666666654
No 241
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.91 E-value=8.4e-07 Score=68.37 Aligned_cols=110 Identities=14% Similarity=0.016 Sum_probs=70.5
Q ss_pred ceeEEEcCCCCeEEEe-cCCCeEEEEecCCCc--EEEEeecCCcceEEEEEcCCCcEEEEecC----------CCeEEEE
Q 023643 162 NNAIAVDPQGGAIFSA-AGDSCAYCWDVESSR--IKMVFKGHSDYLHCIVARNSTNQIVTGSE----------DGTARIW 228 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~----------d~~i~vw 228 (279)
...++++|+++.|+++ +..+.|..|++.... ....+....+ ...+++.++|++.++... .+.|..+
T Consensus 187 p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~ 265 (322)
T 2fp8_A 187 PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKF 265 (322)
T ss_dssp CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEE
T ss_pred CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEE
Confidence 3689999999866655 556899999987421 1122221223 788999999987776644 4678888
Q ss_pred eCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 229 DCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 229 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
|. .++.+..+..... .....++++++ .++.++++....+.|..+
T Consensus 266 d~-~G~~~~~~~~~~g----~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~ 309 (322)
T 2fp8_A 266 DE-FGNILEVIPLPPP----FAGEHFEQIQE-HDGLLYIGTLFHGSVGIL 309 (322)
T ss_dssp CT-TSCEEEEEECCTT----TTTSCCCEEEE-ETTEEEEECSSCSEEEEE
T ss_pred CC-CCCEEEEEECCCC----CccccceEEEE-eCCEEEEeecCCCceEEE
Confidence 86 5777777743211 00234666666 356666666566777655
No 242
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.90 E-value=5.7e-08 Score=75.87 Aligned_cols=76 Identities=11% Similarity=0.031 Sum_probs=62.0
Q ss_pred eEEEcCCCCeEEEecC---------CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCc-EEEEec-CCCeEEEEeCCC
Q 023643 164 AIAVDPQGGAIFSAAG---------DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTN-QIVTGS-EDGTARIWDCKS 232 (279)
Q Consensus 164 ~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~-~d~~i~vwd~~~ 232 (279)
.++++|+++.++++.. ++.+.++|+.+.+.+..+.... ....|+|+|+++ .+++.. .++.|.++|+.+
T Consensus 268 ~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred eeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence 3789999998887643 2356699999999998887443 578999999987 566666 599999999999
Q ss_pred CceEEEec
Q 023643 233 GKCIKVID 240 (279)
Q Consensus 233 ~~~~~~~~ 240 (279)
++.+.++.
T Consensus 347 ~kvv~~I~ 354 (368)
T 1mda_H 347 DQDQSSVE 354 (368)
T ss_dssp CEEEEECC
T ss_pred CcEEEEEE
Confidence 99999985
No 243
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.87 E-value=9.1e-07 Score=68.18 Aligned_cols=207 Identities=11% Similarity=0.053 Sum_probs=112.2
Q ss_pred cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccce-eeeccccccccCCccCeEEEEecC-CCC
Q 023643 26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQ-LLGIEPDGFLHGHDGPAYDVKFYG-GNE 103 (279)
Q Consensus 26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~-~~~ 103 (279)
....+++|.+ +++++.++..++.|..|+..+.... .+......... ...+............+..+++.+ ++
T Consensus 19 ~~p~~i~~d~----~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g- 92 (322)
T 2fp8_A 19 YAPNSFTFDS----TNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN- 92 (322)
T ss_dssp SCCCCEECCT----TCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-
T ss_pred CCceEEEEcC----CCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCC-
Confidence 3456788998 8887888888999999988753211 00000000000 000000000001123578899997 55
Q ss_pred ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC-CCCeEEEecC---
Q 023643 104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP-QGGAIFSAAG--- 179 (279)
Q Consensus 104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~--- 179 (279)
.|+.+...+.|..+|..... .......... .+ ......+++.+ ++...++-..
T Consensus 93 --~l~v~d~~~~i~~~d~~~g~-~~~~~~~~~~--~~------------------~~~p~~i~~d~~~G~l~v~d~~~~~ 149 (322)
T 2fp8_A 93 --QLYIVDCYYHLSVVGSEGGH-ATQLATSVDG--VP------------------FKWLYAVTVDQRTGIVYFTDVSTLY 149 (322)
T ss_dssp --EEEEEETTTEEEEECTTCEE-CEEEESEETT--EE------------------CSCEEEEEECTTTCCEEEEESCSSC
T ss_pred --cEEEEECCCCEEEEeCCCCE-EEEecccCCC--Cc------------------ccccceEEEecCCCEEEEECCcccc
Confidence 45555445558888754221 0111000000 00 01247889999 8876665332
Q ss_pred --------------CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEE-EecCCCeEEEEeCCCCc--eEEEecCC
Q 023643 180 --------------DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIV-TGSEDGTARIWDCKSGK--CIKVIDPV 242 (279)
Q Consensus 180 --------------d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d~~i~vwd~~~~~--~~~~~~~~ 242 (279)
++.|..+|..+++...... .......++++|+++.|. +-...+.|.+|++.... ....+..
T Consensus 150 ~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~- 227 (322)
T 2fp8_A 150 DDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK- 227 (322)
T ss_dssp CTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-
T ss_pred cccccceehcccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-
Confidence 3779999987765433222 123346799999988554 44667899999987521 1112210
Q ss_pred ccccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643 243 KDKQLKGVISCVSCITLDASESWLVRVRA 271 (279)
Q Consensus 243 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 271 (279)
+.+ ...++++++|+++++...
T Consensus 228 ----~~g----P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 228 ----IPN----PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp ----CSS----EEEEEECTTSCEEEEEEE
T ss_pred ----CCC----CCCeEECCCCCEEEEecC
Confidence 012 567889999987666544
No 244
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.84 E-value=9.7e-08 Score=81.21 Aligned_cols=98 Identities=13% Similarity=0.135 Sum_probs=69.8
Q ss_pred eEEEecCCCeEEEEecCCCcEEEEeecCC-cc--------------------------------------eEEEEEcCCC
Q 023643 173 AIFSAAGDSCAYCWDVESSRIKMVFKGHS-DY--------------------------------------LHCIVARNST 213 (279)
Q Consensus 173 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~--------------------------------------i~~i~~~~~~ 213 (279)
.++.++.+|.++++|.++++++...+... .. -..++++|+.
T Consensus 321 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~ 400 (689)
T 1yiq_A 321 VLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT 400 (689)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC
Confidence 78889999999999999999885432111 00 0126788887
Q ss_pred cEEEEecC---------------------------------------------CCeEEEEeCCCCceEEEecCCcccccc
Q 023643 214 NQIVTGSE---------------------------------------------DGTARIWDCKSGKCIKVIDPVKDKQLK 248 (279)
Q Consensus 214 ~~l~~~~~---------------------------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~ 248 (279)
.++++... +|.|+.||+.+++.+..+...
T Consensus 401 ~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~------ 474 (689)
T 1yiq_A 401 GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV------ 474 (689)
T ss_dssp TEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES------
T ss_pred CEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC------
Confidence 77665421 478999999999998887421
Q ss_pred CcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 249 GVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 249 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.++..-.+...+.+++.|+.||.++.||
T Consensus 475 ---~~~~~g~~~tagglvf~gt~dg~l~a~D 502 (689)
T 1yiq_A 475 ---TIFNGGTLSTAGNLVFEGSADGRVIAYA 502 (689)
T ss_dssp ---SSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred ---CCccCccceECCCEEEEECCCCcEEEEE
Confidence 1222334555778899999999999986
No 245
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.83 E-value=8.9e-07 Score=69.75 Aligned_cols=99 Identities=10% Similarity=0.103 Sum_probs=67.5
Q ss_pred CCCeEEEecCCCeEEEEecCCCcEEEEeec-CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCcccccc
Q 023643 170 QGGAIFSAAGDSCAYCWDVESSRIKMVFKG-HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLK 248 (279)
Q Consensus 170 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 248 (279)
++..+++++.++.|..+|..+++.+..... ....+..... .+..|+.++.+|.|.++|..+++.+......
T Consensus 276 ~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~------ 347 (376)
T 3q7m_A 276 DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVD------ 347 (376)
T ss_dssp ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECC------
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecC------
Confidence 356788888899999999999998877652 1222222222 2567888899999999999999988877431
Q ss_pred CcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 249 GVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 249 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.......... .+..|+.++.+|.+..||
T Consensus 348 -~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 348 -SSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp -TTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred -CCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 1111111222 245688888999998874
No 246
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.76 E-value=3e-05 Score=60.35 Aligned_cols=195 Identities=11% Similarity=0.003 Sum_probs=111.3
Q ss_pred cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643 26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA 105 (279)
Q Consensus 26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 105 (279)
.....++|++. ++.++.+-...+.|..+++.... ....+.........+++.+.+. .
T Consensus 73 ~~~~~l~~d~~---~~~ly~~D~~~~~I~r~~~~g~~-------------------~~~~~~~~~~~p~glavd~~~g-~ 129 (349)
T 3v64_C 73 ENAIALDFHHR---RELVFWSDVTLDRILRANLNGSN-------------------VEEVVSTGLESPGGLAVDWVHD-K 129 (349)
T ss_dssp SCEEEEEEETT---TTEEEEEETTTTEEEEEETTSCS-------------------CEEEECSSCSCCCEEEEETTTT-E
T ss_pred CceEEEEEecc---ccEEEEEeccCCceEEEecCCCC-------------------ceEEEeCCCCCccEEEEecCCC-e
Confidence 45788999972 45555665677889999887631 1111111223356788887554 2
Q ss_pred EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec-CC-CeE
Q 023643 106 LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA-GD-SCA 183 (279)
Q Consensus 106 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-~~i 183 (279)
++++-...+.|.+.+++.. ... . ...... .....++++|.+..|+... .. +.|
T Consensus 130 ly~~d~~~~~I~~~~~dG~-~~~-~-l~~~~l----------------------~~P~~iavdp~~g~ly~td~~~~~~I 184 (349)
T 3v64_C 130 LYWTDSGTSRIEVANLDGA-HRK-V-LLWQSL----------------------EKPRAIALHPMEGTIYWTDWGNTPRI 184 (349)
T ss_dssp EEEEETTTTEEEEEETTSC-SCE-E-EECTTC----------------------SCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred EEEEcCCCCeEEEEcCCCC-ceE-E-EEeCCC----------------------CCcceEEEecCcCeEEEeccCCCCEE
Confidence 5566666788988887521 111 1 111100 0147899999766555544 34 788
Q ss_pred EEEecCCCcEEEEeecCCcceEEEEEcCCC-cEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCC
Q 023643 184 YCWDVESSRIKMVFKGHSDYLHCIVARNST-NQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS 262 (279)
Q Consensus 184 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 262 (279)
..+++............-.....++++|++ +++++-...+.|..+|+........+. .......++++. .
T Consensus 185 ~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~--------~~~~~P~giav~-~ 255 (349)
T 3v64_C 185 EASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS--------QGLPHPFAITVF-E 255 (349)
T ss_dssp EEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------SSCSSEEEEEEE-T
T ss_pred EEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe--------CCCCCceEEEEE-C
Confidence 888876433322222234567899999864 555566677889999986433333331 112234566663 3
Q ss_pred CCEEEEEcCcceEEe
Q 023643 263 ESWLVRVRATNYVIL 277 (279)
Q Consensus 263 ~~~l~~~~~d~~i~~ 277 (279)
+.++++-...+.|..
T Consensus 256 ~~ly~td~~~~~V~~ 270 (349)
T 3v64_C 256 DSLYWTDWHTKSINS 270 (349)
T ss_dssp TEEEEEETTTTEEEE
T ss_pred CEEEEecCCCCeEEE
Confidence 455555545555543
No 247
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.75 E-value=1.9e-05 Score=62.46 Aligned_cols=214 Identities=9% Similarity=-0.040 Sum_probs=119.4
Q ss_pred ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccc
Q 023643 4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPD 83 (279)
Q Consensus 4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (279)
.|+..++++.... .+.........++|.+. ++.++++-...+.|..+++.... ..
T Consensus 97 ~I~~i~~~~~~~~---~~~~~~~~~~gl~~d~~---~~~ly~~D~~~~~I~r~~~~g~~-------------------~~ 151 (386)
T 3v65_B 97 DIRQVLPHRSEYT---LLLNNLENAIALDFHHR---RELVFWSDVTLDRILRANLNGSN-------------------VE 151 (386)
T ss_dssp CEEEECTTSCCCE---EEECSCSCEEEEEEETT---TTEEEEEETTTTEEEEEETTSCC-------------------EE
T ss_pred cceeeccCCCcEE---EEecCCCccEEEEEecC---CCeEEEEeCCCCcEEEEecCCCC-------------------cE
Confidence 4555555553321 12122345788999972 45556666677889999987531 11
Q ss_pred ccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCce
Q 023643 84 GFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENN 163 (279)
Q Consensus 84 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 163 (279)
..+.........+++.+.+. .++++-...+.|.+.+++.. . .... ..... ....
T Consensus 152 ~~~~~~~~~p~glavd~~~g-~lY~~d~~~~~I~~~~~dg~-~-~~~l-~~~~l----------------------~~P~ 205 (386)
T 3v65_B 152 EVVSTGLESPGGLAVDWVHD-KLYWTDSGTSRIEVANLDGA-H-RKVL-LWQSL----------------------EKPR 205 (386)
T ss_dssp EEECSSCSCCCCEEEETTTT-EEEEEETTTTEEEECBTTSC-S-CEEE-ECSSC----------------------SCEE
T ss_pred EEEeCCCCCccEEEEEeCCC-eEEEEcCCCCeEEEEeCCCC-c-eEEe-ecCCC----------------------CCCc
Confidence 11111222345678887554 25566666778888876421 1 1111 11100 0247
Q ss_pred eEEEcCCCCeEEEecC-C-CeEEEEecCCCcEEEEeecCCcceEEEEEcCCC-cEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 164 AIAVDPQGGAIFSAAG-D-SCAYCWDVESSRIKMVFKGHSDYLHCIVARNST-NQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 164 ~~~~~~~~~~l~~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
.++++|.+..|+.... . +.|..+++............-.....|+++|++ +++++-+..+.|..+|+........+.
T Consensus 206 giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~ 285 (386)
T 3v65_B 206 AIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS 285 (386)
T ss_dssp EEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEEC
T ss_pred EEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEE
Confidence 8999987776665543 3 688888886443333333334557899999864 555666677889999986443333332
Q ss_pred CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643 241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL 277 (279)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 277 (279)
.......++++. .+.++++-...+.|..
T Consensus 286 --------~~~~~P~giav~-~~~ly~td~~~~~V~~ 313 (386)
T 3v65_B 286 --------QGLPHPFAITVF-EDSLYWTDWHTKSINS 313 (386)
T ss_dssp --------SSCSSEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred --------CCCCCceEEEEE-CCEEEEeeCCCCeEEE
Confidence 112234566663 3455555555555554
No 248
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.72 E-value=3.1e-06 Score=66.60 Aligned_cols=183 Identities=12% Similarity=0.061 Sum_probs=102.7
Q ss_pred CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEe
Q 023643 40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGW 119 (279)
Q Consensus 40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 119 (279)
++..+++++.++.|..+|..+++. +-............... + . .++.++.++.|..+
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~-------------------~W~~~~~~~~~~~p~~~-~-~--~v~v~~~~g~l~~~ 158 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTV-------------------AWQTKVAGEALSRPVVS-D-G--LVLIHTSNGQLQAL 158 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCE-------------------EEEEECSSCCCSCCEEE-T-T--EEEEECTTSEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE-------------------EEEEeCCCceEcCCEEE-C-C--EEEEEcCCCeEEEE
Confidence 346777888899999999988532 11111111100011111 2 3 68888889999999
Q ss_pred ecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec
Q 023643 120 RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG 199 (279)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 199 (279)
|.++.+ ......... +..... ........ +..+++++.++.+..+|..+++.+.....
T Consensus 159 d~~tG~---~~W~~~~~~--~~~~~~---------------~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 159 NEADGA---VKWTVNLDM--PSLSLR---------------GESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRI 216 (376)
T ss_dssp ETTTCC---EEEEEECCC-------C---------------CCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEEC
T ss_pred ECCCCc---EEEEEeCCC--Cceeec---------------CCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence 976542 111111100 000000 00111222 35688888899999999999998877653
Q ss_pred CCcc-------eEEEEEcC--CCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643 200 HSDY-------LHCIVARN--STNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR 270 (279)
Q Consensus 200 ~~~~-------i~~i~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 270 (279)
.... +..+...| .+..++.++.++.+..+|.++++.+...... ....+.. ++..|+.++
T Consensus 217 ~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~----------~~~~~~~--~~~~l~~~~ 284 (376)
T 3q7m_A 217 SQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG----------SVNDFIV--DGNRIYLVD 284 (376)
T ss_dssp CC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC----------CEEEEEE--ETTEEEEEE
T ss_pred ccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC----------CCCCceE--ECCEEEEEc
Confidence 2110 00011112 2567777888999999999999988776321 1223333 245566666
Q ss_pred CcceEEeCC
Q 023643 271 ATNYVILFS 279 (279)
Q Consensus 271 ~d~~i~~wd 279 (279)
.++.+..+|
T Consensus 285 ~~g~l~~~d 293 (376)
T 3q7m_A 285 QNDRVMALT 293 (376)
T ss_dssp TTCCEEEEE
T ss_pred CCCeEEEEE
Confidence 677666553
No 249
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.70 E-value=3.2e-06 Score=72.78 Aligned_cols=195 Identities=9% Similarity=0.062 Sum_probs=106.1
Q ss_pred ceEEEEEC-CCCCCCCCEEEEecC-CC----cEEEEeCCCCCcccccccCCcccceeeeccccc-cccCCccCeEEEEec
Q 023643 27 TVFRTVWG-PSKDGSPDTIVIASS-DG----SITSYSIPSCISKLPLGLSNSKVQQLLGIEPDG-FLHGHDGPAYDVKFY 99 (279)
Q Consensus 27 ~v~~~~~~-~~~~~~~~~l~~~~~-dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~ 99 (279)
.+...+|| | ||++||.+.. +| +|+++|+.++. +.+. .+. .....+.|+
T Consensus 175 ~~~~~~~S~P----DG~~lAy~~~~~G~~~~~l~v~dl~~g~------------------~~l~~~~~---~~~~~~~Ws 229 (751)
T 2xe4_A 175 DVMEVKPAPP----EHDLVAFSVDMSGNEVYTIEFKRISDPS------------------QTIADKVS---GTNGEIVWG 229 (751)
T ss_dssp EEEEEEECTT----TTCEEEEEEESSSSSCEEEEEEETTCTT------------------CCCCCCEE---EECSCCEEC
T ss_pred EEeeeEecCC----CCCEEEEEEeCCCCceEEEEEEECCCCC------------------EeCCcccc---CceeeEEEe
Confidence 57788999 9 8998886432 22 49999998740 2110 111 113467899
Q ss_pred CCCCceEEEEeeCC-----CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeE
Q 023643 100 GGNEDALLLSCGDD-----GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAI 174 (279)
Q Consensus 100 ~~~~~~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 174 (279)
|+++ .|+....| ..|.++++.+.... ....+..... .....+.|+|++++|
T Consensus 230 pDg~--~l~y~~~d~~~~~~~v~~~~lgt~~~~-~~lv~~~~~~---------------------~~~~~~~~SpDg~~l 285 (751)
T 2xe4_A 230 PDHT--SLFYVTKDETLRENKVWRHVMGKLQSE-DVCLYEEHNP---------------------LFSAFMYKAADTNTL 285 (751)
T ss_dssp SSTT--EEEEEEECTTCCEEEEEEEETTSCGGG-CEEEEECCCT---------------------TCEEEEEECTTSSEE
T ss_pred cCCC--EEEEEEECCCCCCCEEEEEECCCCchh-cEEEEecCCC---------------------ceEEEEEECCCCCEE
Confidence 9998 56555554 24666666432111 0111110000 013578899999987
Q ss_pred EEec---CCCeEEEEecCCC--cE--EEEeecCCcceEEEEEcCCCcEEEEecCC----CeEEEEeCCCC-ceEE-EecC
Q 023643 175 FSAA---GDSCAYCWDVESS--RI--KMVFKGHSDYLHCIVARNSTNQIVTGSED----GTARIWDCKSG-KCIK-VIDP 241 (279)
Q Consensus 175 ~~~~---~d~~i~i~d~~~~--~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----~~i~vwd~~~~-~~~~-~~~~ 241 (279)
+... ....|+++|+.++ +. .............+.|+..+.+++....+ ..|..+|+.++ +... .+.
T Consensus 286 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~- 364 (751)
T 2xe4_A 286 CIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD- 364 (751)
T ss_dssp EEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC-
T ss_pred EEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC-
Confidence 7654 2456899999875 23 33333344555666655444455554443 35777777653 2222 231
Q ss_pred CccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 242 VKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
......+..+.+. .+.++++...++..++|
T Consensus 365 ------~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 365 ------HSEDVFMESIAVR-SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp ------CCSSEEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred ------CCCCcEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence 1112245556665 33455566666765543
No 250
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.66 E-value=2.2e-06 Score=70.17 Aligned_cols=88 Identities=8% Similarity=-0.013 Sum_probs=59.2
Q ss_pred eEEEEecCC--CcE-EEEeecCCcceEEEEEcCCCcEEEEe-cCCCeEEEEeCCCCc------------eEEEecCCccc
Q 023643 182 CAYCWDVES--SRI-KMVFKGHSDYLHCIVARNSTNQIVTG-SEDGTARIWDCKSGK------------CIKVIDPVKDK 245 (279)
Q Consensus 182 ~i~i~d~~~--~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~vwd~~~~~------------~~~~~~~~~~~ 245 (279)
.|.+.|.++ ++. +..+.. .....++.++|||++++++ ..+.+|.++|+.+.+ ....+.
T Consensus 255 ~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~----- 328 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE----- 328 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-----
T ss_pred cEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-----
Confidence 377777776 434 444432 2245689999999976555 478899999998653 222221
Q ss_pred cccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 246 QLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 246 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
-......++|+|+|...++.--|+.|.+||
T Consensus 329 ----vG~gP~h~aF~~dG~aY~t~~ldsqV~kwd 358 (595)
T 1fwx_A 329 ----LGLGPLHTAFDGRGNAYTSLFLDSQVVKWN 358 (595)
T ss_dssp ----CCSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred ----CCCCcceEEECCCCeEEEEEecCCcEEEEE
Confidence 123467899999995455667799999886
No 251
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.63 E-value=3e-06 Score=62.16 Aligned_cols=150 Identities=11% Similarity=0.095 Sum_probs=94.1
Q ss_pred eEEEEecCCCCceEEEEeeCCC--cEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC
Q 023643 93 AYDVKFYGGNEDALLLSCGDDG--RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ 170 (279)
Q Consensus 93 v~~~~~~~~~~~~~l~s~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 170 (279)
...|.|+ ++. ++.+.+.+| .|+++|+.+.+..... .+.. ......+.++
T Consensus 45 tqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~-~l~~-------------------------~~FgeGit~~ 95 (262)
T 3nol_A 45 TEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQI-ELGK-------------------------RYFGEGISDW 95 (262)
T ss_dssp EEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEE-ECCT-------------------------TCCEEEEEEE
T ss_pred cceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEE-ecCC-------------------------ccceeEEEEe
Confidence 5788998 554 777777776 8999998764322111 1111 0122223334
Q ss_pred CCeEEEec-CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccC
Q 023643 171 GGAIFSAA-GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKG 249 (279)
Q Consensus 171 ~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 249 (279)
+..|+... .++.+.+||..+.+.+.++..... ...+.++++.|+.+..++.|.++|..+.+.+..+.... .+
T Consensus 96 g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e---G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~----~g 168 (262)
T 3nol_A 96 KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE---GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA----HG 168 (262)
T ss_dssp TTEEEEEESSSSEEEEEETTTCCEEEEEECSSC---CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE----TT
T ss_pred CCEEEEEEeeCCEEEEEECccCcEEEEEECCCC---ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc----CC
Confidence 55665554 478999999999999999875332 22333567777777678889999999999988885421 11
Q ss_pred cc-eeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 250 VI-SCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 250 ~~-~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
.. ..++.+.|. +|+..+..-.++.|.+.|
T Consensus 169 ~~~~~lNELe~~-~G~lyan~w~~~~I~vID 198 (262)
T 3nol_A 169 EELPELNELEWV-DGEIFANVWQTNKIVRID 198 (262)
T ss_dssp EECCCEEEEEEE-TTEEEEEETTSSEEEEEC
T ss_pred ccccccceeEEE-CCEEEEEEccCCeEEEEE
Confidence 11 234456665 676555554566665543
No 252
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.62 E-value=3.5e-06 Score=62.46 Aligned_cols=180 Identities=8% Similarity=-0.102 Sum_probs=107.3
Q ss_pred Cceeeeccccccccceeeeeeccc-ceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 3 GDSTNWDEDAYRKSILKEREILTR-TVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 3 G~v~iw~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
+.|++.|+++.+. +........ ....+++.. +.+.++...++.+.++|..+ .+
T Consensus 44 s~v~~iD~~tg~v--~~~i~l~~~~fgeGi~~~g-----~~lyv~t~~~~~v~viD~~t-------------------~~ 97 (266)
T 2iwa_A 44 SSVRQVALQTGKV--ENIHKMDDSYFGEGLTLLN-----EKLYQVVWLKNIGFIYDRRT-------------------LS 97 (266)
T ss_dssp CEEEEEETTTCCE--EEEEECCTTCCEEEEEEET-----TEEEEEETTCSEEEEEETTT-------------------TE
T ss_pred CEEEEEECCCCCE--EEEEecCCCcceEEEEEeC-----CEEEEEEecCCEEEEEECCC-------------------Cc
Confidence 4677777776642 333321111 112344433 34555666789999999998 34
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
.+..+..-...-.. ++++++ .++.+..++.|.++|..+.+....+..... ..++. .
T Consensus 98 v~~~i~~g~~~g~g--lt~Dg~--~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~--~~p~~------------------~ 153 (266)
T 2iwa_A 98 NIKNFTHQMKDGWG--LATDGK--ILYGSDGTSILYEIDPHTFKLIKKHNVKYN--GHRVI------------------R 153 (266)
T ss_dssp EEEEEECCSSSCCE--EEECSS--SEEEECSSSEEEEECTTTCCEEEEEECEET--TEECC------------------C
T ss_pred EEEEEECCCCCeEE--EEECCC--EEEEECCCCeEEEEECCCCcEEEEEEECCC--Ccccc------------------c
Confidence 44444311111123 445665 454555688999999865432222111111 11110 1
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecC-------------CcceEEEEEcCCCc-EEEEecCCCeEEE
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGH-------------SDYLHCIVARNSTN-QIVTGSEDGTARI 227 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------------~~~i~~i~~~~~~~-~l~~~~~d~~i~v 227 (279)
++.+.|. ++..++....++.|.+.|..+++.+..+... ......|+|+|+++ .++++...+.+.+
T Consensus 154 ~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~ 232 (266)
T 2iwa_A 154 LNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE 232 (266)
T ss_dssp EEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred ceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence 3567777 6654555556789999999999999888632 13568999999865 6777778999998
Q ss_pred EeCCCC
Q 023643 228 WDCKSG 233 (279)
Q Consensus 228 wd~~~~ 233 (279)
.++...
T Consensus 233 i~l~~~ 238 (266)
T 2iwa_A 233 IKLHLV 238 (266)
T ss_dssp EEEEEC
T ss_pred EEEecc
Confidence 887654
No 253
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.57 E-value=7.4e-06 Score=69.52 Aligned_cols=61 Identities=10% Similarity=0.201 Sum_probs=48.3
Q ss_pred CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 180 DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 180 d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
+|.|..||+.+++.+.+.+.+. +.....+...+.+++.++.|+.|++||.++++.+..+..
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence 4889999999999988776433 223333445678889999999999999999999988854
No 254
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.57 E-value=1.2e-05 Score=59.00 Aligned_cols=150 Identities=8% Similarity=0.106 Sum_probs=96.6
Q ss_pred cCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC
Q 023643 91 GPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ 170 (279)
Q Consensus 91 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 170 (279)
.....|.|.. +. ++.+.+.+|.|+++|+++.+..... +..... -..+++ +
T Consensus 55 ~ftqGL~~~~-~~--Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~F-----------------------geGit~--~ 104 (268)
T 3nok_A 55 AFTQGLVFHQ-GH--FFESTGHQGTLRQLSLESAQPVWME--RLGNIF-----------------------AEGLAS--D 104 (268)
T ss_dssp CCEEEEEEET-TE--EEEEETTTTEEEECCSSCSSCSEEE--ECTTCC-----------------------EEEEEE--C
T ss_pred cccceEEEEC-CE--EEEEcCCCCEEEEEECCCCcEEeEE--CCCCcc-----------------------eeEEEE--e
Confidence 3357888874 33 7888889999999998765443333 222100 123444 4
Q ss_pred CCeEEEe-cCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccC
Q 023643 171 GGAIFSA-AGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKG 249 (279)
Q Consensus 171 ~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 249 (279)
+..|+.. -.++.+.+||..+.+.+.++..... -..++ ++++.|+.+..++.|.++|..+.+.+..+.... .+
T Consensus 105 g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~----~g 177 (268)
T 3nok_A 105 GERLYQLTWTEGLLFTWSGMPPQRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL----RG 177 (268)
T ss_dssp SSCEEEEESSSCEEEEEETTTTEEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEE----TT
T ss_pred CCEEEEEEccCCEEEEEECCcCcEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC----CC
Confidence 4455444 4578999999999999999875322 23444 567777777779999999999999998885422 11
Q ss_pred c-ceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 250 V-ISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 250 ~-~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
. -..++.+.|. +|+..+..-.++.|.+-
T Consensus 178 ~~v~~lNeLe~~-dG~lyanvw~s~~I~vI 206 (268)
T 3nok_A 178 QPVELINELECA-NGVIYANIWHSSDVLEI 206 (268)
T ss_dssp EECCCEEEEEEE-TTEEEEEETTCSEEEEE
T ss_pred cccccccccEEe-CCEEEEEECCCCeEEEE
Confidence 1 1234566666 67655555455666553
No 255
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.54 E-value=0.00013 Score=56.00 Aligned_cols=217 Identities=11% Similarity=-0.041 Sum_probs=119.6
Q ss_pred ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccc
Q 023643 4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPD 83 (279)
Q Consensus 4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (279)
.|+..++++......... .......+++|.+. ++.++.+-...+.|..++++.... ..
T Consensus 14 ~I~~i~l~~~~~~~~~~~-~~~~~~~~ld~d~~---~~~lyw~D~~~~~I~r~~~~g~~~------------------~~ 71 (318)
T 3sov_A 14 DLRLVDATNGKENATIVV-GGLEDAAAVDFVFS---HGLIYWSDVSEEAIKRTEFNKTES------------------VQ 71 (318)
T ss_dssp EEEEEETTCTTSCCEEEE-EEEEEEEEEEEEGG---GTEEEEEETTTTEEEEEETTSSSC------------------CC
T ss_pred eEEEEECCCCceEEEEEe-cCCCccEEEEEEeC---CCEEEEEECCCCcEEEEEccCCCc------------------eE
Confidence 566777766431111111 12345778999983 455666666778899999876310 01
Q ss_pred ccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCce
Q 023643 84 GFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENN 163 (279)
Q Consensus 84 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 163 (279)
..+...-.....+++.+.+. .++++-...+.|.+++++.. ..... ..... ....
T Consensus 72 ~~~~~~l~~p~glavd~~~g-~ly~~d~~~~~I~~~~~dG~-~~~~l--~~~~~----------------------~~P~ 125 (318)
T 3sov_A 72 NVVVSGLLSPDGLACDWLGE-KLYWTDSETNRIEVSNLDGS-LRKVL--FWQEL----------------------DQPR 125 (318)
T ss_dssp EEEEECCSCCCEEEEETTTT-EEEEEETTTTEEEEEETTSC-SCEEE--ECSSC----------------------SSEE
T ss_pred EEEcCCCCCccEEEEEcCCC-eEEEEECCCCEEEEEECCCC-cEEEE--EeCCC----------------------CCcc
Confidence 11111123456788886544 25566666788999887531 11111 00100 0147
Q ss_pred eEEEcCCCCeEEEecC--CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCC-cEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 164 AIAVDPQGGAIFSAAG--DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNST-NQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 164 ~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
.++++|.+..|+.+.. .+.|...++............-.....++++|++ +++++-+..+.|..+|+..... ..+.
T Consensus 126 giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~ 204 (318)
T 3sov_A 126 AIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVV 204 (318)
T ss_dssp EEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE
T ss_pred EEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-EEEe
Confidence 8899987666666552 5788888876332222222233456899999864 4555666788899999864333 3331
Q ss_pred CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643 241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL 277 (279)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 277 (279)
.+......++++.. +.++.+-...+.|..
T Consensus 205 -------~~~~~~P~glav~~-~~lywtd~~~~~V~~ 233 (318)
T 3sov_A 205 -------KGSLPHPFALTLFE-DILYWTDWSTHSILA 233 (318)
T ss_dssp -------CSCCSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred -------cCCCCCceEEEEeC-CEEEEEecCCCeEEE
Confidence 11112334556643 344444444555544
No 256
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.52 E-value=1e-05 Score=68.67 Aligned_cols=219 Identities=8% Similarity=-0.055 Sum_probs=113.8
Q ss_pred ceeeeccccccccceeeeee-cccceEEEEECCCCCCCCCEEEEecC-CCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643 4 DSTNWDEDAYRKSILKEREI-LTRTVFRTVWGPSKDGSPDTIVIASS-DGSITSYSIPSCISKLPLGLSNSKVQQLLGIE 81 (279)
Q Consensus 4 ~v~iw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (279)
.+.+||+.+.....+..... +.....++++.+ ++.+++.|+. +..+.+||..+.. ..
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~----~g~lyv~GG~~~~~v~~yd~~t~~-----------------W~ 278 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG----NGQIVVTGGNDAKKTSLYDSSSDS-----------------WI 278 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECT----TSCEEEECSSSTTCEEEEEGGGTE-----------------EE
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCC----CCCEEEeCCCCCCceEEecCcCCc-----------------ee
Confidence 46778877766544433322 222233567777 8999999984 4689999987632 12
Q ss_pred ccccccCCccCeEEEEecCCCCceEEEEee-CC-----CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcccc
Q 023643 82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCG-DD-----GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGA 155 (279)
Q Consensus 82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (279)
.+..+..... -.++...++++ +++.|+ .+ ..+.+||+.+.. . ..+......++. ....
T Consensus 279 ~~~~~~~~R~-~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~---W-~~~~~~~~~p~~---~~~~------ 342 (656)
T 1k3i_A 279 PGPDMQVARG-YQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKT---W-TSLPNAKVNPML---TADK------ 342 (656)
T ss_dssp ECCCCSSCCS-SCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTE---E-EEETTSCSGGGC---CCCT------
T ss_pred ECCCCCcccc-ccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCc---c-eeCCCccccccc---cccc------
Confidence 2222222111 12445566777 888888 44 468889875421 1 010000000000 0000
Q ss_pred CCCCCCceeEEEcCCCCeEEEecC---------CCeEEEEecCCCcEEEEeecCCc---------ceEEEEEcC-CCcEE
Q 023643 156 LSPVPENNAIAVDPQGGAIFSAAG---------DSCAYCWDVESSRIKMVFKGHSD---------YLHCIVARN-STNQI 216 (279)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~---------~i~~i~~~~-~~~~l 216 (279)
...+..++..++.++. ...+..||..+.........+.. .-.++.|.. +++.+
T Consensus 343 --------~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~ 414 (656)
T 1k3i_A 343 --------QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKIL 414 (656)
T ss_dssp --------TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEE
T ss_pred --------cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEE
Confidence 0011123333333332 34678899887654433222211 224455543 67888
Q ss_pred EEecCCC-----------eEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643 217 VTGSEDG-----------TARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT 272 (279)
Q Consensus 217 ~~~~~d~-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 272 (279)
+.|+.++ .|.+||..+.+........ ......-.+++..|++++++.|+.+
T Consensus 415 v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-----mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 415 TFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNG-----LYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp EECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTC-----CSSCCBSCEEEECTTSCEEEECCBS
T ss_pred EEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCC-----CCCCcccCCeEECCCCCEEEECCcc
Confidence 8888543 6888998877655432000 0111112344567899999999864
No 257
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.51 E-value=7.1e-05 Score=57.13 Aligned_cols=192 Identities=11% Similarity=0.019 Sum_probs=109.1
Q ss_pred cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643 26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA 105 (279)
Q Consensus 26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 105 (279)
.....++|++ +++++++-..++.|..|+..... ...+. -...+..+++.++++
T Consensus 32 ~~pegia~~~----~g~lyv~d~~~~~I~~~d~~g~~--------------------~~~~~-~~~~p~gia~~~dG~-- 84 (306)
T 2p4o_A 32 TFLENLASAP----DGTIFVTNHEVGEIVSITPDGNQ--------------------QIHAT-VEGKVSGLAFTSNGD-- 84 (306)
T ss_dssp CCEEEEEECT----TSCEEEEETTTTEEEEECTTCCE--------------------EEEEE-CSSEEEEEEECTTSC--
T ss_pred CCcceEEECC----CCCEEEEeCCCCeEEEECCCCce--------------------EEEEe-CCCCceeEEEcCCCc--
Confidence 4577899999 88888887788999999887521 11111 123578899999987
Q ss_pred EEEEeeCCC--cEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeE
Q 023643 106 LLLSCGDDG--RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCA 183 (279)
Q Consensus 106 ~l~s~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 183 (279)
++++..... .|..++..+... ........ .. ....++..+.+..+++-..++.|
T Consensus 85 l~vad~~~~~~~v~~~d~~~g~~-~~~~~~~~--~~---------------------~~~g~~~~~~~~~~v~d~~~g~i 140 (306)
T 2p4o_A 85 LVATGWNADSIPVVSLVKSDGTV-ETLLTLPD--AI---------------------FLNGITPLSDTQYLTADSYRGAI 140 (306)
T ss_dssp EEEEEECTTSCEEEEEECTTSCE-EEEEECTT--CS---------------------CEEEEEESSSSEEEEEETTTTEE
T ss_pred EEEEeccCCcceEEEEcCCCCeE-EEEEeCCC--cc---------------------ccCcccccCCCcEEEEECCCCeE
Confidence 655554332 355555433211 00011000 00 02344445544444444458899
Q ss_pred EEEecCCCcE-EEEee---------cCCcceEEEEEcCCCcE-EEEecCCCeEEEEeCCC-Cce--EEEecCCccccccC
Q 023643 184 YCWDVESSRI-KMVFK---------GHSDYLHCIVARNSTNQ-IVTGSEDGTARIWDCKS-GKC--IKVIDPVKDKQLKG 249 (279)
Q Consensus 184 ~i~d~~~~~~-~~~~~---------~~~~~i~~i~~~~~~~~-l~~~~~d~~i~vwd~~~-~~~--~~~~~~~~~~~~~~ 249 (279)
+++|..+++. +.... ..-.....+ +|+++. +++-...+.|.+|++.. ++. ...+. .
T Consensus 141 ~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-------~- 210 (306)
T 2p4o_A 141 WLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-------E- 210 (306)
T ss_dssp EEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-------E-
T ss_pred EEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-------c-
Confidence 9999875432 21110 111234555 777754 56666788999999874 321 11110 0
Q ss_pred cceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 250 VISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 250 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
......++++++|+++++....+.|.++|
T Consensus 211 -~~~P~gi~vd~dG~l~va~~~~~~V~~~~ 239 (306)
T 2p4o_A 211 -QTNIDDFAFDVEGNLYGATHIYNSVVRIA 239 (306)
T ss_dssp -SCCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred -cCCCCCeEECCCCCEEEEeCCCCeEEEEC
Confidence 12346788999998777766667777664
No 258
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.51 E-value=0.00011 Score=56.01 Aligned_cols=216 Identities=8% Similarity=-0.017 Sum_probs=113.6
Q ss_pred CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCC--cEEEEeCCCCCcccccccCCcccceeeec
Q 023643 3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDG--SITSYSIPSCISKLPLGLSNSKVQQLLGI 80 (279)
Q Consensus 3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 80 (279)
+.|..||.++.. ..... .......+++.+ +++++++..... .|..++..++...
T Consensus 53 ~~I~~~d~~g~~---~~~~~-~~~~p~gia~~~----dG~l~vad~~~~~~~v~~~d~~~g~~~---------------- 108 (306)
T 2p4o_A 53 GEIVSITPDGNQ---QIHAT-VEGKVSGLAFTS----NGDLVATGWNADSIPVVSLVKSDGTVE---------------- 108 (306)
T ss_dssp TEEEEECTTCCE---EEEEE-CSSEEEEEEECT----TSCEEEEEECTTSCEEEEEECTTSCEE----------------
T ss_pred CeEEEECCCCce---EEEEe-CCCCceeEEEcC----CCcEEEEeccCCcceEEEEcCCCCeEE----------------
Confidence 556666665532 11121 235688899999 888766654332 3555665553210
Q ss_pred cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643 81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160 (279)
Q Consensus 81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (279)
.+..+. .......++..+.+. .+++-..++.|.++|...... ........ ... ... .....
T Consensus 109 -~~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~--~v~~~~~~-~~~---------~~~---~~~~~ 169 (306)
T 2p4o_A 109 -TLLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSG--SIWLEHPM-LAR---------SNS---ESVFP 169 (306)
T ss_dssp -EEEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEE--EEEEECGG-GSC---------SST---TCCSC
T ss_pred -EEEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcE--eEEEECCc-ccc---------ccc---cCCCC
Confidence 001111 112234455445443 455555688888888642100 00000000 000 000 00001
Q ss_pred CceeEEEcCCCCeEEEe-cCCCeEEEEecCC-CcE--EEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE
Q 023643 161 ENNAIAVDPQGGAIFSA-AGDSCAYCWDVES-SRI--KMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI 236 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~-~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~ 236 (279)
..+.+ +|+++.|+++ ...+.|..+|+.. ++. ...+.. ......++++++|+++++....+.|.++|.. ++..
T Consensus 170 ~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~ 245 (306)
T 2p4o_A 170 AANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTT 245 (306)
T ss_dssp SEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEE
T ss_pred cCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEE
Confidence 13455 7788766554 5578999999874 321 112211 1345678999999988888788899999975 6553
Q ss_pred EEecCCccccccCcceeeeEEEEc---CCCCEEEEEcC
Q 023643 237 KVIDPVKDKQLKGVISCVSCITLD---ASESWLVRVRA 271 (279)
Q Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~ 271 (279)
..... .......++++|. |++..|+.++.
T Consensus 246 ~~~~~------~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 246 IIAQA------EQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp EEECG------GGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred EEeec------ccccCCceEEEEecccCCCCEEEEECC
Confidence 32111 1122357899998 88776665543
No 259
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.49 E-value=8.6e-05 Score=56.93 Aligned_cols=194 Identities=11% Similarity=0.158 Sum_probs=115.0
Q ss_pred CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCC----CCc-eE-EEEeeC-
Q 023643 40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGG----NED-AL-LLSCGD- 112 (279)
Q Consensus 40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~-~~-l~s~~~- 112 (279)
...+++.....+-+.+||+. ++.+..+.. +.++.+..-|. ++. .+ +++.-.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~--------------------G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~ 96 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLD--------------------GKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSE 96 (355)
T ss_dssp GGCEEEEEETTTEEEEEETT--------------------SCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECST
T ss_pred CccEEEEEcCCCCEEEEcCC--------------------CcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCC
Confidence 44566666677889999995 455555543 45677766662 110 02 334444
Q ss_pred -CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEE--cCC-CC-eEEEecCCCeEEEEe
Q 023643 113 -DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAV--DPQ-GG-AIFSAAGDSCAYCWD 187 (279)
Q Consensus 113 -dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~-~~-~l~~~~~d~~i~i~d 187 (279)
+++|++|+++.... ..... +....++. .....+..+++ +|. +. ++++...+|.+..|+
T Consensus 97 ~~n~l~vf~iDp~~~--~l~~i-~~~~~pv~--------------t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~ 159 (355)
T 3amr_A 97 GKNTIEIYAIDGKNG--TLQSM-TDPDHPIA--------------TAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYE 159 (355)
T ss_dssp TCCEEEEEEECTTTC--CEEEC-SCTTSCEE--------------CCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEE
T ss_pred CCCeEEEEEECCCCC--ceeec-cccccCcC--------------CCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEE
Confidence 58999998742211 11111 10000000 00012466677 774 43 678888899999998
Q ss_pred cC-------CCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC-----CCceEEEecCCccccccCcceeee
Q 023643 188 VE-------SSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK-----SGKCIKVIDPVKDKQLKGVISCVS 255 (279)
Q Consensus 188 ~~-------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~-----~~~~~~~~~~~~~~~~~~~~~~v~ 255 (279)
+. +.+.+++|.. .+.+-.+...+....|+.+-++.-|..++.+ +++.+..+.. ..-...+.
T Consensus 160 l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~------g~l~aDvE 232 (355)
T 3amr_A 160 LKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG------RHLTRDIE 232 (355)
T ss_dssp EEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS------SSBCSCEE
T ss_pred EEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC------CccccCcc
Confidence 83 3467788874 3567888888888889989888777777754 3445554421 12223577
Q ss_pred EEEE--cCCCC-EEEEEc-CcceEEeCC
Q 023643 256 CITL--DASES-WLVRVR-ATNYVILFS 279 (279)
Q Consensus 256 ~~~~--~~~~~-~l~~~~-~d~~i~~wd 279 (279)
.|++ .++++ +|++++ .+++..+||
T Consensus 233 GLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 233 GLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp EEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred eEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 8877 45555 566555 566777764
No 260
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.49 E-value=0.00016 Score=56.22 Aligned_cols=154 Identities=12% Similarity=0.036 Sum_probs=91.2
Q ss_pred cCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC
Q 023643 91 GPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ 170 (279)
Q Consensus 91 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 170 (279)
..+..++|.+... .++++-...+.|..++++... .... ..... .....+++++.
T Consensus 73 ~~~~~l~~d~~~~-~ly~~D~~~~~I~r~~~~g~~-~~~~--~~~~~----------------------~~p~glavd~~ 126 (349)
T 3v64_C 73 ENAIALDFHHRRE-LVFWSDVTLDRILRANLNGSN-VEEV--VSTGL----------------------ESPGGLAVDWV 126 (349)
T ss_dssp SCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCS-CEEE--ECSSC----------------------SCCCEEEEETT
T ss_pred CceEEEEEecccc-EEEEEeccCCceEEEecCCCC-ceEE--EeCCC----------------------CCccEEEEecC
Confidence 3478999998665 245555567888888875321 1110 00000 01368899875
Q ss_pred CCeE-EEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCC-cEEEEecCC-CeEEEEeCCCCceEEEecCCccccc
Q 023643 171 GGAI-FSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNST-NQIVTGSED-GTARIWDCKSGKCIKVIDPVKDKQL 247 (279)
Q Consensus 171 ~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d-~~i~vwd~~~~~~~~~~~~~~~~~~ 247 (279)
+..| ++-...+.|.+.++........+...-.....++++|.+ .++++-... +.|..+++.. .....+-
T Consensus 127 ~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~------- 198 (349)
T 3v64_C 127 HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SGRRIIA------- 198 (349)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEESC-------
T ss_pred CCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-CCcEEEE-------
Confidence 5544 555567889999987544333333344567899999954 455555555 7898888754 3333331
Q ss_pred cCcceeeeEEEEcCCCCEEEEE-cCcceEEeC
Q 023643 248 KGVISCVSCITLDASESWLVRV-RATNYVILF 278 (279)
Q Consensus 248 ~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~w 278 (279)
...-.....++++|++..|..+ +..+.|..+
T Consensus 199 ~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~ 230 (349)
T 3v64_C 199 DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 230 (349)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ECCCCCcceEEEeCCCCEEEEEECCCCEEEEE
Confidence 1122345789999866655544 445556554
No 261
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.47 E-value=0.00021 Score=54.85 Aligned_cols=220 Identities=10% Similarity=-0.048 Sum_probs=120.6
Q ss_pred CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccc
Q 023643 3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEP 82 (279)
Q Consensus 3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (279)
..|+..++++... .... .......+++|++. ++.++++-...+.|..+++..... +..
T Consensus 10 ~~I~~i~~~~~~~--~~~~-~~~~~p~g~~~d~~---~~~ly~~D~~~~~I~~~~~~g~~~----------------~~~ 67 (316)
T 1ijq_A 10 HEVRKMTLDRSEY--TSLI-PNLRNVVALDTEVA---SNRIYWSDLSQRMICSTQLDRAHG----------------VSS 67 (316)
T ss_dssp SSEEEEETTSCCC--EEEE-CSCSSEEEEEEETT---TTEEEEEETTTTEEEEEEC------------------------
T ss_pred CeEEEEECCCcce--Eehh-cCCCceEEEEEEeC---CCEEEEEECCCCcEEEEECCCCCC----------------Ccc
Confidence 4567777776532 1112 23356789999982 445556666778999999875100 000
Q ss_pred c-ccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643 83 D-GFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161 (279)
Q Consensus 83 ~-~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (279)
. ..+...-.....+++.+.+. ++.++-...+.|.+.+++.. ...... ... . ..
T Consensus 68 ~~~~~~~~~~~p~glavd~~~~-~ly~~d~~~~~I~~~~~~g~-~~~~~~--~~~------------~----------~~ 121 (316)
T 1ijq_A 68 YDTVISRDIQAPDGLAVDWIHS-NIYWTDSVLGTVSVADTKGV-KRKTLF--REN------------G----------SK 121 (316)
T ss_dssp CEEEECSSCSCCCEEEEETTTT-EEEEEETTTTEEEEEETTSS-SEEEEE--ECT------------T----------CC
T ss_pred cEEEEeCCCCCcCEEEEeecCC-eEEEEECCCCEEEEEeCCCC-ceEEEE--ECC------------C----------CC
Confidence 0 11111223456788876544 25566567788999887521 101110 000 0 02
Q ss_pred ceeEEEcCCCCeEEEecCC--CeEEEEecCCCcEEEEe-ecCCcceEEEEEcCCCc-EEEEecCCCeEEEEeCCCCceEE
Q 023643 162 NNAIAVDPQGGAIFSAAGD--SCAYCWDVESSRIKMVF-KGHSDYLHCIVARNSTN-QIVTGSEDGTARIWDCKSGKCIK 237 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~-~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~ 237 (279)
...++++|.+..|+.+... +.|...++. +.....+ ...-.....++++|++. ++++-+..+.|..+|+... ...
T Consensus 122 P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~ 199 (316)
T 1ijq_A 122 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRK 199 (316)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCE
T ss_pred cceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceE
Confidence 4789999977766655442 688888876 4433333 22345678999998654 4555567789999998643 333
Q ss_pred EecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 238 VIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
.+... ........++++. .+.++++-...+.|..+
T Consensus 200 ~~~~~-----~~~~~~P~giav~-~~~ly~~d~~~~~V~~~ 234 (316)
T 1ijq_A 200 TILED-----EKRLAHPFSLAVF-EDKVFWTDIINEAIFSA 234 (316)
T ss_dssp EEEEC-----TTTTSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred EEeec-----CCccCCcEEEEEE-CCEEEEEECCCCeEEEE
Confidence 33110 0111223566665 35555555556666543
No 262
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.46 E-value=0.00051 Score=59.68 Aligned_cols=203 Identities=9% Similarity=-0.006 Sum_probs=120.8
Q ss_pred ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED 104 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 104 (279)
...|.++...+ ++.+.+ |+.+| |.+|+..+...... . ........-....|.++...+++.
T Consensus 262 ~~~i~~i~~d~----~g~lWi-gt~~G-l~~~~~~~~~~~~~-~-----------~~~~~~~~l~~~~i~~i~~D~~g~- 322 (795)
T 4a2l_A 262 SNYIRSLAMDS----QNRLWI-GTFND-LNIYHEGTDSFASY-S-----------SNPVENGSLSQRSVRSIFMDSQGG- 322 (795)
T ss_dssp CSBEEEEEECT----TSCEEE-EESSC-EEEEETTTTEEEEE-C-----------CCTTSTTSCSSSCEEEEEECTTSC-
T ss_pred CCeEEEEEEcC----CCCEEE-EeCCh-hheEcCCCCeEEEE-e-----------cCCCCCCCCCCCcEEEEEEeCCcC-
Confidence 35699999888 676554 44444 88888775321100 0 000000111345699999988885
Q ss_pred eEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEE
Q 023643 105 ALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAY 184 (279)
Q Consensus 105 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 184 (279)
|..|+.++-|..++..... ...+..... ........|.++..++++. |.+|+.++-|.
T Consensus 323 --lWigt~~~Gl~~~~~~~~~----~~~~~~~~~---------------~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~ 380 (795)
T 4a2l_A 323 --MWLGTYFGGLNYYHPIRNR----FKNIRNIPY---------------KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLN 380 (795)
T ss_dssp --EEEEESSSCEEEECGGGGS----SEEECCCTT---------------SSSCSCSSEEEEEECTTSC-EEEEESSSCEE
T ss_pred --EEEEECCCCeEEeCCCccc----ceEEcCCCC---------------CCCCCCCeeEEEEECCCCC-EEEEECCCCeE
Confidence 6667777788888854321 001100000 0000112478888888775 55677777799
Q ss_pred EEecCCCcEEEEeec--------CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeE
Q 023643 185 CWDVESSRIKMVFKG--------HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSC 256 (279)
Q Consensus 185 i~d~~~~~~~~~~~~--------~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 256 (279)
.||..+++....... ....|.+++..++++.|..|+.++-|.+||..+++......... ......|.+
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~----~l~~~~v~~ 456 (795)
T 4a2l_A 381 LYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNS----QLVNENVYA 456 (795)
T ss_dssp EECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTS----CCSCSCEEE
T ss_pred EEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCC----CcCCCeeEE
Confidence 999887654432211 23578999998888856667777779999988876543321110 123357889
Q ss_pred EEEcCCCCEEEEEcCcc
Q 023643 257 ITLDASESWLVRVRATN 273 (279)
Q Consensus 257 ~~~~~~~~~l~~~~~d~ 273 (279)
+..+++|.+.+... +|
T Consensus 457 i~~d~~g~lwigt~-~G 472 (795)
T 4a2l_A 457 ILPDGEGNLWLGTL-SA 472 (795)
T ss_dssp EEECSSSCEEEEES-SC
T ss_pred EEECCCCCEEEEec-Cc
Confidence 99998888666554 44
No 263
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.44 E-value=5.1e-05 Score=55.17 Aligned_cols=150 Identities=9% Similarity=0.057 Sum_probs=90.5
Q ss_pred cCeEEEEecCCCCceEEEEeeCCC--cEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEc
Q 023643 91 GPAYDVKFYGGNEDALLLSCGDDG--RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVD 168 (279)
Q Consensus 91 ~~v~~~~~~~~~~~~~l~s~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 168 (279)
.....+.|++ +. ++.+.+.+| .|+.+|+.+.+..... .+... .......
T Consensus 21 ~ftqGL~~~~-~~--LyestG~~g~S~v~~vD~~tgkv~~~~-~l~~~-------------------------~fgeGi~ 71 (243)
T 3mbr_X 21 AFTEGLFYLR-GH--LYESTGETGRSSVRKVDLETGRILQRA-EVPPP-------------------------YFGAGIV 71 (243)
T ss_dssp CCEEEEEEET-TE--EEEEECCTTSCEEEEEETTTCCEEEEE-ECCTT-------------------------CCEEEEE
T ss_pred cccccEEEEC-CE--EEEECCCCCCceEEEEECCCCCEEEEE-eCCCC-------------------------cceeEEE
Confidence 4577899987 33 667777654 8999998754222111 11110 1122222
Q ss_pred CCCCeEEEe-cCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccc
Q 023643 169 PQGGAIFSA-AGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQL 247 (279)
Q Consensus 169 ~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 247 (279)
+.+..|+.. -.++.+.+||..+.+.+.++...... ..++ ++++.|+.+..++.|.++|..+.+.+.++....
T Consensus 72 ~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~---- 144 (243)
T 3mbr_X 72 AWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA---- 144 (243)
T ss_dssp EETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE----
T ss_pred EeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc----
Confidence 234555444 45789999999999999998754322 3444 556666666678999999999999988885421
Q ss_pred cCcc-eeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643 248 KGVI-SCVSCITLDASESWLVRVRATNYVIL 277 (279)
Q Consensus 248 ~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~ 277 (279)
.+.. ..++.+.+. +|+.++..-.+..|.+
T Consensus 145 ~g~~~~~lNeLe~~-~G~lyanvw~s~~I~v 174 (243)
T 3mbr_X 145 GGRPLDNLNELEWV-NGELLANVWLTSRIAR 174 (243)
T ss_dssp TTEECCCEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred CCcccccceeeEEe-CCEEEEEECCCCeEEE
Confidence 1111 233455554 5655554444445544
No 264
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.44 E-value=4.1e-05 Score=63.75 Aligned_cols=62 Identities=13% Similarity=-0.008 Sum_probs=46.7
Q ss_pred CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 179 GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 179 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
.++.|..||+.+++.+.++... ..+....+...+..++.++.|+.|+.+|.++|+.+..+..
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 3588999999999998877632 2222222233466777799999999999999999998864
No 265
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.43 E-value=5.2e-06 Score=70.46 Aligned_cols=98 Identities=14% Similarity=0.113 Sum_probs=66.3
Q ss_pred eEEEecCCCeEEEEecCCCcEEEEeecCC------------cce------------------------EEEEEcCCCcEE
Q 023643 173 AIFSAAGDSCAYCWDVESSRIKMVFKGHS------------DYL------------------------HCIVARNSTNQI 216 (279)
Q Consensus 173 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------------~~i------------------------~~i~~~~~~~~l 216 (279)
.++.++.+|.++++|..+++.+...+... .++ ..++++|+...+
T Consensus 316 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~ 395 (668)
T 1kv9_A 316 VLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLV 395 (668)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEE
T ss_pred EEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEE
Confidence 68889999999999999999885443211 000 125677765554
Q ss_pred EEe------------------------------------cCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEc
Q 023643 217 VTG------------------------------------SEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLD 260 (279)
Q Consensus 217 ~~~------------------------------------~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 260 (279)
... ..+|.|..||+.+++.+...... .......+.
T Consensus 396 yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~---------~~~~~~~~~ 466 (668)
T 1kv9_A 396 YIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP---------THWNGGTLS 466 (668)
T ss_dssp EEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES---------SSCCCCEEE
T ss_pred EEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC---------CCCcCceeE
Confidence 431 13488999999999988776421 122223344
Q ss_pred CCCCEEEEEcCcceEEeCC
Q 023643 261 ASESWLVRVRATNYVILFS 279 (279)
Q Consensus 261 ~~~~~l~~~~~d~~i~~wd 279 (279)
..+.+++.++.|+.++.||
T Consensus 467 t~gg~vf~g~~dg~l~a~d 485 (668)
T 1kv9_A 467 TAGNLVFQGTAAGQMHAYS 485 (668)
T ss_dssp ETTTEEEEECTTSEEEEEE
T ss_pred eCCCEEEEECCcccchhhh
Confidence 4677888899999999875
No 266
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.41 E-value=0.00063 Score=59.14 Aligned_cols=206 Identities=9% Similarity=-0.029 Sum_probs=120.3
Q ss_pred ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED 104 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 104 (279)
...|.++...+ ++.+ -.|+.++-|..|+..+..... +. .... .-.-....|.++...+++.
T Consensus 309 ~~~i~~i~~D~----~g~l-Wigt~~~Gl~~~~~~~~~~~~-~~-----------~~~~-~~~l~~~~V~~i~~d~~g~- 369 (795)
T 4a2l_A 309 QRSVRSIFMDS----QGGM-WLGTYFGGLNYYHPIRNRFKN-IR-----------NIPY-KNSLSDNVVSCIVEDKDKN- 369 (795)
T ss_dssp SSCEEEEEECT----TSCE-EEEESSSCEEEECGGGGSSEE-EC-----------CCTT-SSSCSCSSEEEEEECTTSC-
T ss_pred CCcEEEEEEeC----CcCE-EEEECCCCeEEeCCCcccceE-Ec-----------CCCC-CCCCCCCeeEEEEECCCCC-
Confidence 35789998888 6664 456666678888876421100 00 0000 0001235689998888775
Q ss_pred eEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEE
Q 023643 105 ALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAY 184 (279)
Q Consensus 105 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 184 (279)
|..|..++-|..|+..+.. ...+...... .. .......|.++...+++..|.+|+.++-|.
T Consensus 370 --lWiGt~~~Gl~~~~~~~~~----~~~~~~~~~~-------~~------~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~ 430 (795)
T 4a2l_A 370 --LWIGTNDGGLNLYNPITQR----FTSYTLQEDE-------SA------RGIGSNNIKAVYVDEKKSLVYIGTHAGGLS 430 (795)
T ss_dssp --EEEEESSSCEEEECTTTCC----EEEECCC-------------------CCSCSCEEEEEEETTTTEEEEEETTTEEE
T ss_pred --EEEEECCCCeEEEcCCCCc----EEEEecCCCC-------cc------cCCCCccEEEEEEcCCCCEEEEEeCcCcee
Confidence 6667777779999865321 1111100000 00 000012378888888877577788777799
Q ss_pred EEecCCCcEEEEee----cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEc
Q 023643 185 CWDVESSRIKMVFK----GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLD 260 (279)
Q Consensus 185 i~d~~~~~~~~~~~----~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 260 (279)
.||..+++...-.. .....|.++...+++++.+... +| |.+||..+++........... .-....|.++..+
T Consensus 431 ~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G-l~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~i~~d 506 (795)
T 4a2l_A 431 ILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SA-LVRFNPEQRSFTTIEKEKDGT--PVVSKQITTLFRD 506 (795)
T ss_dssp EEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SC-EEEEETTTTEEEECCBCTTCC--BCCCCCEEEEEEC
T ss_pred EEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-Cc-eeEEeCCCCeEEEcccccccc--ccCCceEEEEEEC
Confidence 99998776544321 1345789999888887666544 44 888998876554322110000 1123568899999
Q ss_pred CCCCEEEEEcCcc
Q 023643 261 ASESWLVRVRATN 273 (279)
Q Consensus 261 ~~~~~l~~~~~d~ 273 (279)
++|.+.+... +|
T Consensus 507 ~~g~lWigt~-~G 518 (795)
T 4a2l_A 507 SHKRLWIGGE-EG 518 (795)
T ss_dssp TTCCEEEEES-SC
T ss_pred CCCCEEEEeC-Cc
Confidence 9988766554 44
No 267
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.39 E-value=0.00033 Score=56.17 Aligned_cols=160 Identities=11% Similarity=0.114 Sum_probs=92.7
Q ss_pred CeEEEEecC-CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC
Q 023643 92 PAYDVKFYG-GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ 170 (279)
Q Consensus 92 ~v~~~~~~~-~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 170 (279)
....+++.| ++. ++++-..++.|+.++..+.......... +. .+ .-..++|+|+
T Consensus 229 ~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~-~~--------------~~--------~~~~ia~dpd 283 (433)
T 4hw6_A 229 GAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMM-DT--------------KG--------SNFHIVWHPT 283 (433)
T ss_dssp SBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEEC-SC--------------CS--------SCEEEEECTT
T ss_pred CCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEecc-CC--------------CC--------CcccEEEeCC
Confidence 345678888 554 5556666788888886532110000000 00 00 1246999999
Q ss_pred CCeEEEe-cCCCeEEEEecC--CCcE--EEEeecC---------------CcceEEEEE---------cCCCcEEEEecC
Q 023643 171 GGAIFSA-AGDSCAYCWDVE--SSRI--KMVFKGH---------------SDYLHCIVA---------RNSTNQIVTGSE 221 (279)
Q Consensus 171 ~~~l~~~-~~d~~i~i~d~~--~~~~--~~~~~~~---------------~~~i~~i~~---------~~~~~~l~~~~~ 221 (279)
++.|+.+ ...+.|+.++.. ++.. ...+.+. -.....+++ .++++++++-..
T Consensus 284 G~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~ 363 (433)
T 4hw6_A 284 GDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD 363 (433)
T ss_dssp SSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC
Confidence 9955554 556889998865 2321 1122111 123677999 777888888888
Q ss_pred CCeEEEEeCCCCceEEEecCCcc----------ccccCcceeeeEEEEc-CCCCEEEEEcCcceEEeC
Q 023643 222 DGTARIWDCKSGKCIKVIDPVKD----------KQLKGVISCVSCITLD-ASESWLVRVRATNYVILF 278 (279)
Q Consensus 222 d~~i~vwd~~~~~~~~~~~~~~~----------~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~~w 278 (279)
.+.|+.++. +|... ++..... ......-..-..++++ +++.++++=..++.|+.+
T Consensus 364 n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 429 (433)
T 4hw6_A 364 SHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI 429 (433)
T ss_dssp TTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred CCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 899999985 56443 3321100 0000111236789999 677777776777778764
No 268
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.38 E-value=0.0002 Score=57.40 Aligned_cols=118 Identities=10% Similarity=0.046 Sum_probs=70.5
Q ss_pred ceeEEEcC-CCCeEEEecCCCeEEEEecCCCcEEEEe-ec-CCcceEEEEEcCCCc-EEEEecCCCeEEEEeCC--CCce
Q 023643 162 NNAIAVDP-QGGAIFSAAGDSCAYCWDVESSRIKMVF-KG-HSDYLHCIVARNSTN-QIVTGSEDGTARIWDCK--SGKC 235 (279)
Q Consensus 162 i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~-~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~--~~~~ 235 (279)
...++++| ++.++++-..++.|+.+|..++.....+ .. .......++++|+++ ++++-...+.|+.+++. ++..
T Consensus 230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~ 309 (433)
T 4hw6_A 230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKL 309 (433)
T ss_dssp BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCB
T ss_pred CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCccc
Confidence 36789999 5555555556789999999877663332 21 122335799999998 55666677889998765 3322
Q ss_pred E--EEecCC-ccccc------cCcceeeeEEEE---------cCCCCEEEEEcCcceEEeCC
Q 023643 236 I--KVIDPV-KDKQL------KGVISCVSCITL---------DASESWLVRVRATNYVILFS 279 (279)
Q Consensus 236 ~--~~~~~~-~~~~~------~~~~~~v~~~~~---------~~~~~~l~~~~~d~~i~~wd 279 (279)
. ..+... ....+ ...-..-..+++ .+++.++++-...+.|+.++
T Consensus 310 ~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~ 371 (433)
T 4hw6_A 310 AVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT 371 (433)
T ss_dssp CCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred CcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence 1 122110 00000 011123567888 77777777777777777654
No 269
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.35 E-value=0.00056 Score=54.30 Aligned_cols=168 Identities=13% Similarity=0.008 Sum_probs=98.1
Q ss_pred cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643 24 LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE 103 (279)
Q Consensus 24 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 103 (279)
....+..++|++. ++.++.+-...+.|+.+++...... ......+.........+++.+.+.
T Consensus 110 ~~~~~~~l~~d~~---~~~lywsD~~~~~I~~~~~~g~~~~---------------~~~~~~~~~~~~~p~glavD~~~~ 171 (400)
T 3p5b_L 110 NLRNVVALDTEVA---SNRIYWSDLSQRMICSTQLDRAHGV---------------SSYDTVISRDIQAPDGLAVDWIHS 171 (400)
T ss_dssp SCSCEEEEEEETT---TTEEEEEETTTTEEEEEEC---------------------CCCEEEECSSCSCEEEEEEETTTT
T ss_pred ccCcceEEeeeec---cCceEEEecCCCeEEEEEcccCCCC---------------CcceEEEeCCCCCcccEEEEecCC
Confidence 3457889999982 4455555566788888888652100 001111222234567888887444
Q ss_pred ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC--CC
Q 023643 104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG--DS 181 (279)
Q Consensus 104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~ 181 (279)
++.++-...+.|.+.+++... .... .... . .....|+++|.+..|+.... .+
T Consensus 172 -~lY~~d~~~~~I~~~~~~g~~-~~~l--~~~~------------~----------~~P~~iavdp~~g~ly~td~~~~~ 225 (400)
T 3p5b_L 172 -NIYWTDSVLGTVSVADTKGVK-RKTL--FREN------------G----------SKPRAIVVDPVHGFMYWTDWGTPA 225 (400)
T ss_dssp -EEEEEETTTTEEEEECTTTCS-EEEE--EECS------------S----------CCEEEEEEETTTTEEEEEECSSSC
T ss_pred -ceEEEECCCCeEEEEeCCCCc-eEEE--EeCC------------C----------CCcceEEEecccCeEEEEeCCCCC
Confidence 255666667888888865211 0011 1100 0 01478999997776665542 36
Q ss_pred eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEE-EEecCCCeEEEEeCCCCce
Q 023643 182 CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQI-VTGSEDGTARIWDCKSGKC 235 (279)
Q Consensus 182 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd~~~~~~ 235 (279)
.|...++............-.....|++++++..| ++-...+.|..+|+.....
T Consensus 226 ~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~ 280 (400)
T 3p5b_L 226 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR 280 (400)
T ss_dssp CEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC
T ss_pred EEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc
Confidence 88888887443333333334567899999865554 5556678899999865433
No 270
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.35 E-value=0.00032 Score=56.27 Aligned_cols=154 Identities=10% Similarity=0.065 Sum_probs=89.6
Q ss_pred ceEEEEECC-CCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643 27 TVFRTVWGP-SKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA 105 (279)
Q Consensus 27 ~v~~~~~~~-~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 105 (279)
....|+++| . ++.++++ ...+.|+.+|+... . +..+.........|+|.++++
T Consensus 138 ~P~~lavdp~~---~g~Lyv~-d~~~~I~~id~~~~-------------------~-v~~~~~~~~~P~~ia~d~~G~-- 191 (430)
T 3tc9_A 138 GAVWLSFDPKN---HNHLYLV-GEQHPTRLIDFEKE-------------------Y-VSTVYSGLSKVRTICWTHEAD-- 191 (430)
T ss_dssp CCCEEEEETTE---EEEEEEE-EBTEEEEEEETTTT-------------------E-EEEEECCCSCEEEEEECTTSS--
T ss_pred CCCEEEECCCC---CCeEEEE-eCCCcEEEEECCCC-------------------E-EEEEecCCCCcceEEEeCCCC--
Confidence 346778886 1 2444444 33378888888752 1 122222345578999999987
Q ss_pred EEEEeeC-CC----cEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC-CCCeEEEecC
Q 023643 106 LLLSCGD-DG----RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP-QGGAIFSAAG 179 (279)
Q Consensus 106 ~l~s~~~-dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~ 179 (279)
+|+.+.. ++ .+...+.. . ...... .+.. . .....++++| ++.++++-..
T Consensus 192 ~lyvad~~~~~~~~~v~~~~~~-g-~~~~~~-----------~l~~--~----------~~p~giavdp~~g~lyv~d~~ 246 (430)
T 3tc9_A 192 SMIITNDQNNNDRPNNYILTRE-S-GFKVIT-----------ELTK--G----------QNCNGAETHPINGELYFNSWN 246 (430)
T ss_dssp EEEEEECCSCTTSEEEEEEEGG-G-TSCSEE-----------EEEE--C----------SSCCCEEECTTTCCEEEEETT
T ss_pred EEEEEeCCCCcccceEEEEeCC-C-ceeeee-----------eecc--C----------CCceEEEEeCCCCEEEEEECC
Confidence 5655544 22 23333321 1 000000 0000 0 0146889999 6665666666
Q ss_pred CCeEEEEecCCCcEEEEeec-CCcceEEEEEcCCCc-EEEEecCCCeEEEEeCC
Q 023643 180 DSCAYCWDVESSRIKMVFKG-HSDYLHCIVARNSTN-QIVTGSEDGTARIWDCK 231 (279)
Q Consensus 180 d~~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~ 231 (279)
++.|..+|...+........ .......++|+|+++ ++++-...+.|..++..
T Consensus 247 ~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 247 AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 78999999987654332222 224578999999999 55666678889998765
No 271
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.31 E-value=2.9e-05 Score=62.30 Aligned_cols=150 Identities=10% Similarity=0.053 Sum_probs=89.1
Q ss_pred CeEEEEecC-CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC
Q 023643 92 PAYDVKFYG-GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ 170 (279)
Q Consensus 92 ~v~~~~~~~-~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 170 (279)
....|+++| ++. .|..+...+.|+.+|+.... ...+.... .....++++++
T Consensus 138 ~P~~lavdp~~~g--~Lyv~d~~~~I~~id~~~~~----v~~~~~~~----------------------~~P~~ia~d~~ 189 (430)
T 3tc9_A 138 GAVWLSFDPKNHN--HLYLVGEQHPTRLIDFEKEY----VSTVYSGL----------------------SKVRTICWTHE 189 (430)
T ss_dssp CCCEEEEETTEEE--EEEEEEBTEEEEEEETTTTE----EEEEECCC----------------------SCEEEEEECTT
T ss_pred CCCEEEECCCCCC--eEEEEeCCCcEEEEECCCCE----EEEEecCC----------------------CCcceEEEeCC
Confidence 456788998 343 55555555788888865321 11111100 02478999999
Q ss_pred CCeEEEecCC-----CeEEEEecCCCcEE--EEeecCCcceEEEEEcC-CCcEEEEecCCCeEEEEeCCCCceEEEecCC
Q 023643 171 GGAIFSAAGD-----SCAYCWDVESSRIK--MVFKGHSDYLHCIVARN-STNQIVTGSEDGTARIWDCKSGKCIKVIDPV 242 (279)
Q Consensus 171 ~~~l~~~~~d-----~~i~i~d~~~~~~~--~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~ 242 (279)
++.|+++... ..+..++.. +... ..+.. ......++++| ++.++++-..++.|..++...+.......
T Consensus 190 G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~-- 265 (430)
T 3tc9_A 190 ADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFT-- 265 (430)
T ss_dssp SSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEE--
T ss_pred CCEEEEEeCCCCcccceEEEEeCC-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEE--
Confidence 9966666541 134444433 3221 22221 23456788999 78878887788999999988665422221
Q ss_pred ccccccCcceeeeEEEEcCCCCEEE-EEcCcceEEeC
Q 023643 243 KDKQLKGVISCVSCITLDASESWLV-RVRATNYVILF 278 (279)
Q Consensus 243 ~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~w 278 (279)
......-..++|+|++++|+ +-...+.|..+
T Consensus 266 -----~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~ 297 (430)
T 3tc9_A 266 -----IQDSGWEFHIQFHPSGNYAYIVVVNQHYILRS 297 (430)
T ss_dssp -----CSSSSCCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred -----cCCCCcceeEEEcCCCCEEEEEECCCCEEEEE
Confidence 11123457899999999544 44556677664
No 272
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.29 E-value=4.4e-05 Score=65.81 Aligned_cols=113 Identities=17% Similarity=0.200 Sum_probs=72.4
Q ss_pred CeEEEEec-CCCCceEEEEe-eCCC----cEEEeecCCC-ccCcceeeeccCcccceEEeecCCCCCccccCCCCCCcee
Q 023643 92 PAYDVKFY-GGNEDALLLSC-GDDG----RICGWRWKEF-TESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNA 164 (279)
Q Consensus 92 ~v~~~~~~-~~~~~~~l~s~-~~dg----~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 164 (279)
.+...+|+ |+++ +|+-+ +.+| .|+++|+.+. ... ...+.. ....
T Consensus 175 ~~~~~~~S~PDG~--~lAy~~~~~G~~~~~l~v~dl~~g~~~l--~~~~~~-------------------------~~~~ 225 (751)
T 2xe4_A 175 DVMEVKPAPPEHD--LVAFSVDMSGNEVYTIEFKRISDPSQTI--ADKVSG-------------------------TNGE 225 (751)
T ss_dssp EEEEEEECTTTTC--EEEEEEESSSSSCEEEEEEETTCTTCCC--CCCEEE-------------------------ECSC
T ss_pred EEeeeEecCCCCC--EEEEEEeCCCCceEEEEEEECCCCCEeC--CccccC-------------------------ceee
Confidence 57889999 9998 66633 3333 4999998754 210 000000 0246
Q ss_pred EEEcCCCCeEEEecCC-----CeEEEEecCCCc--EEEEeec-CCcceEEEEEcCCCcEEEEec---CCCeEEEEeCCCC
Q 023643 165 IAVDPQGGAIFSAAGD-----SCAYCWDVESSR--IKMVFKG-HSDYLHCIVARNSTNQIVTGS---EDGTARIWDCKSG 233 (279)
Q Consensus 165 ~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~--~~~~~~~-~~~~i~~i~~~~~~~~l~~~~---~d~~i~vwd~~~~ 233 (279)
+.|+||++.|+....+ ..|+.+++.++. ....+.. .......+.|+|||++|+..+ ....|.++|+.++
T Consensus 226 ~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 226 IVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp CEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 7899999877666544 368888887753 2233332 234456789999999887655 3446888998875
No 273
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.29 E-value=0.00075 Score=53.28 Aligned_cols=155 Identities=12% Similarity=0.027 Sum_probs=91.3
Q ss_pred cCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC
Q 023643 91 GPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ 170 (279)
Q Consensus 91 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 170 (279)
..+..++|.+.+. .++++-...+.|..++++... ........ .. ....+++++.
T Consensus 116 ~~~~gl~~d~~~~-~ly~~D~~~~~I~r~~~~g~~---~~~~~~~~------------~~----------~p~glavd~~ 169 (386)
T 3v65_B 116 ENAIALDFHHRRE-LVFWSDVTLDRILRANLNGSN---VEEVVSTG------------LE----------SPGGLAVDWV 169 (386)
T ss_dssp SCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCC---EEEEECSS------------CS----------CCCCEEEETT
T ss_pred CccEEEEEecCCC-eEEEEeCCCCcEEEEecCCCC---cEEEEeCC------------CC----------CccEEEEEeC
Confidence 4578999998665 255555667888888875321 00000000 00 1367888875
Q ss_pred CCeE-EEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcE-EEEecCC-CeEEEEeCCCCceEEEecCCccccc
Q 023643 171 GGAI-FSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ-IVTGSED-GTARIWDCKSGKCIKVIDPVKDKQL 247 (279)
Q Consensus 171 ~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~d-~~i~vwd~~~~~~~~~~~~~~~~~~ 247 (279)
+..| ++-...+.|.+.++........+.........++++|.+.. +++-... +.|..+++........+
T Consensus 170 ~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~-------- 241 (386)
T 3v65_B 170 HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA-------- 241 (386)
T ss_dssp TTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE--------
T ss_pred CCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEE--------
Confidence 5544 45555778999998754433334334456789999986554 4444444 78888887643333222
Q ss_pred cCcceeeeEEEEcCCCCEEEEE-cCcceEEeCC
Q 023643 248 KGVISCVSCITLDASESWLVRV-RATNYVILFS 279 (279)
Q Consensus 248 ~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~wd 279 (279)
...-.....++|+|++..|+.+ +..+.|..+|
T Consensus 242 ~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d 274 (386)
T 3v65_B 242 DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 274 (386)
T ss_dssp CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEEC
T ss_pred ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEe
Confidence 1122345789999866555544 4556666543
No 274
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.29 E-value=0.00079 Score=53.43 Aligned_cols=160 Identities=11% Similarity=0.031 Sum_probs=92.2
Q ss_pred CccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEc
Q 023643 89 HDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVD 168 (279)
Q Consensus 89 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 168 (279)
....+..|+|.+... .++++-...+.|+.++++................ .....++++
T Consensus 110 ~~~~~~~l~~d~~~~-~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~---------------------~~p~glavD 167 (400)
T 3p5b_L 110 NLRNVVALDTEVASN-RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI---------------------QAPDGLAVD 167 (400)
T ss_dssp SCSCEEEEEEETTTT-EEEEEETTTTEEEEEEC------CCCEEEECSSC---------------------SCEEEEEEE
T ss_pred ccCcceEEeeeeccC-ceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC---------------------CCcccEEEE
Confidence 345688999998665 2445555678888888753210000001100000 124688998
Q ss_pred CCCC-eEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEec-C-CCeEEEEeCCCCceEEEecCCccc
Q 023643 169 PQGG-AIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS-E-DGTARIWDCKSGKCIKVIDPVKDK 245 (279)
Q Consensus 169 ~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~-d~~i~vwd~~~~~~~~~~~~~~~~ 245 (279)
+.+. ++++-...+.|.+.++........+.........|+++|.+.+|+... . .+.|...++........+
T Consensus 168 ~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~------ 241 (400)
T 3p5b_L 168 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV------ 241 (400)
T ss_dssp TTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE------
T ss_pred ecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE------
Confidence 8544 445555678999999886554444444445678999999655544433 2 478888887643333332
Q ss_pred cccCcceeeeEEEEcCCCCEEEEE-cCcceEEeC
Q 023643 246 QLKGVISCVSCITLDASESWLVRV-RATNYVILF 278 (279)
Q Consensus 246 ~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~w 278 (279)
...-.....+++++++..|+.+ +..+.|..+
T Consensus 242 --~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~ 273 (400)
T 3p5b_L 242 --TENIQWPNGITLDLLSGRLYWVDSKLHSISSI 273 (400)
T ss_dssp --CSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred --ECCCCceEEEEEEeCCCEEEEEECCCCEEEEE
Confidence 1222356789999877666655 344555543
No 275
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.29 E-value=0.00016 Score=60.31 Aligned_cols=62 Identities=11% Similarity=0.055 Sum_probs=45.5
Q ss_pred CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 179 GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 179 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
..|.|.-||+.+++.+.+.+.. .+...-.....+..++.++.|+.|+.||.++|+.+.+++.
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence 3578999999999988877522 1111111223467788899999999999999999998854
No 276
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.28 E-value=4.3e-05 Score=63.57 Aligned_cols=102 Identities=14% Similarity=0.070 Sum_probs=67.7
Q ss_pred CCCC---eEEEecCCCeEEEEecCCCcEEEEeecCC-------------cce--------------------------EE
Q 023643 169 PQGG---AIFSAAGDSCAYCWDVESSRIKMVFKGHS-------------DYL--------------------------HC 206 (279)
Q Consensus 169 ~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------------~~i--------------------------~~ 206 (279)
++++ .++.++.+|.++++|..+++.+..++... .++ ..
T Consensus 311 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~ 390 (571)
T 2ad6_A 311 VNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGV 390 (571)
T ss_dssp ETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred cCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCC
Confidence 4563 57778889999999999999887664321 111 23
Q ss_pred EEEcCCCcEEEEec-------------------------------------CCCeEEEEeCCCCceEEEecCCccccccC
Q 023643 207 IVARNSTNQIVTGS-------------------------------------EDGTARIWDCKSGKCIKVIDPVKDKQLKG 249 (279)
Q Consensus 207 i~~~~~~~~l~~~~-------------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 249 (279)
++++|+..+++..+ .+|.|..||+.+++.+.++...
T Consensus 391 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~------- 463 (571)
T 2ad6_A 391 DSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK------- 463 (571)
T ss_dssp CEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-------
T ss_pred ceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-------
Confidence 57778766655542 3578999999999988877421
Q ss_pred cceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 250 VISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 250 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
..+.+..+...+..++.++.||.++.||
T Consensus 464 --~~~~~~~~~t~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 464 --FAAWGGTLYTKGGLVWYATLDGYLKALD 491 (571)
T ss_dssp --SCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred --CCccceeEEECCCEEEEEcCCCeEEEEE
Confidence 1112222222356677788899988875
No 277
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.28 E-value=0.0015 Score=56.35 Aligned_cols=169 Identities=13% Similarity=-0.001 Sum_probs=98.8
Q ss_pred ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED 104 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 104 (279)
...+.+|+|.+. ++.++++-...+.|+.+++...... ......+.........|++.+.+.
T Consensus 423 ~~~~~gl~~d~~---~~~lY~sD~~~~~I~~~~l~g~~~~---------------~~~~~vi~~~l~~P~GLAvD~~~~- 483 (791)
T 3m0c_C 423 LRNVVALDTEVA---SNRIYWSDLSQRMICSTQLDRAHGV---------------SSYDTVISRDIQAPDGLAVDWIHS- 483 (791)
T ss_dssp CSSEEEEEEETT---TTEEEEEETTTTEEEEEEC-----------------------CEEEECSSCSCCCEEEEETTTT-
T ss_pred CCceEEEeeccc---CCeeEEeeccceeEEEEeccCCCCC---------------cceeEEEecCCCCcceeeeeecCC-
Confidence 456778999882 4555566666788888888752100 011112222234456788887665
Q ss_pred eEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC--CCe
Q 023643 105 ALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG--DSC 182 (279)
Q Consensus 105 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~ 182 (279)
+++++-...+.|.+.+++.. ....+ ..... .....|+++|....|+.... .+.
T Consensus 484 ~LY~tD~~~~~I~v~~ldG~-~~~~l--~~~~l----------------------~~P~gIaVDp~~g~LYwtD~g~~~~ 538 (791)
T 3m0c_C 484 NIYWTDSVLGTVSVADTKGV-KRKTL--FRENG----------------------SKPRAIVVDPVHGFMYWTDWGTPAK 538 (791)
T ss_dssp EEEEEETTTTEEEEEETTSS-SEEEE--EECTT----------------------CCEEEEEEETTTTEEEEEECSSSCE
T ss_pred cEEEEecCCCeEEEEeCCCC-eEEEE--EeCCC----------------------CCcceEEEecCCCCEEEecCCCCCe
Confidence 36666667788999887521 11111 10000 01478999998666666543 368
Q ss_pred EEEEecCCCcEEEEeecCCcceEEEEEcCCCc-EEEEecCCCeEEEEeCCCCceEE
Q 023643 183 AYCWDVESSRIKMVFKGHSDYLHCIVARNSTN-QIVTGSEDGTARIWDCKSGKCIK 237 (279)
Q Consensus 183 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~ 237 (279)
|...++........+...-.....|++++.+. ++++-...+.|..+++.......
T Consensus 539 I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~ 594 (791)
T 3m0c_C 539 IKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT 594 (791)
T ss_dssp EEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred EEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEE
Confidence 99999874444333333446788999997654 44555567789999986444333
No 278
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.27 E-value=0.0011 Score=57.44 Aligned_cols=199 Identities=9% Similarity=0.006 Sum_probs=116.6
Q ss_pred ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED 104 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 104 (279)
...|.++...+ ++.+ -.|+.++-|..|+..+..... . ...-......|.++...+++.
T Consensus 362 ~~~v~~i~~d~----~g~l-Wigt~~~Gl~~~~~~~~~~~~--------------~--~~~~~~~~~~v~~i~~d~~g~- 419 (781)
T 3v9f_A 362 NKVVSSVCDDG----QGKL-WIGTDGGGINVFENGKRVAIY--------------N--KENRELLSNSVLCSLKDSEGN- 419 (781)
T ss_dssp SSCEEEEEECT----TSCE-EEEEBSSCEEEEETTEEEEEC--------------C-------CCCSBEEEEEECTTSC-
T ss_pred CcceEEEEEcC----CCCE-EEEeCCCcEEEEECCCCeEEE--------------c--cCCCCCCCcceEEEEECCCCC-
Confidence 35688888887 6664 455655568888876521000 0 000012345688988887775
Q ss_pred eEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEE
Q 023643 105 ALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAY 184 (279)
Q Consensus 105 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 184 (279)
|..|..++-+..++.++.. ...+... ......|.++...+++. |..|+. +-|.
T Consensus 420 --lWigt~~~Gl~~~~~~~~~----~~~~~~~-------------------~~~~~~v~~i~~d~~g~-lwigt~-~Gl~ 472 (781)
T 3v9f_A 420 --LWFGTYLGNISYYNTRLKK----FQIIELE-------------------KNELLDVRVFYEDKNKK-IWIGTH-AGVF 472 (781)
T ss_dssp --EEEEETTEEEEEECSSSCE----EEECCST-------------------TTCCCCEEEEEECTTSE-EEEEET-TEEE
T ss_pred --EEEEeccCCEEEEcCCCCc----EEEeccC-------------------CCCCCeEEEEEECCCCC-EEEEEC-CceE
Confidence 5556766778888864321 1111000 00112378888887765 445555 5588
Q ss_pred EEecCCCcEEEEeecC-----CcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEE
Q 023643 185 CWDVESSRIKMVFKGH-----SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITL 259 (279)
Q Consensus 185 i~d~~~~~~~~~~~~~-----~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 259 (279)
.||..+++........ ...|.++...++|++.+.....| |..||..+++.. .+.... .-....|.++..
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~-~~~~~~----~l~~~~i~~i~~ 546 (781)
T 3v9f_A 473 VIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR-KFNQYE----GFCSNTINQIYR 546 (781)
T ss_dssp EEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE-EECTTT----TCSCSCEEEEEE
T ss_pred EEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE-EccCCC----CCCCCeeEEEEE
Confidence 9998876544332212 36789999988887666544355 777887766543 332211 112356889999
Q ss_pred cCCCCEEEEEcCcceEEeCC
Q 023643 260 DASESWLVRVRATNYVILFS 279 (279)
Q Consensus 260 ~~~~~~l~~~~~d~~i~~wd 279 (279)
+++|.+.++.. +|.+..||
T Consensus 547 d~~g~lWi~T~-~Glv~~~d 565 (781)
T 3v9f_A 547 SSKGQMWLATG-EGLVCFPS 565 (781)
T ss_dssp CTTSCEEEEET-TEEEEESC
T ss_pred CCCCCEEEEEC-CCceEEEC
Confidence 99988666654 67646554
No 279
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.25 E-value=0.0004 Score=53.28 Aligned_cols=199 Identities=12% Similarity=0.131 Sum_probs=111.8
Q ss_pred CceeeeccccccccceeeeeecccceEEEEECCCCCCCCC---EEEEec-C--CCcEEEEeCCCCCcccccccCCcccce
Q 023643 3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPD---TIVIAS-S--DGSITSYSIPSCISKLPLGLSNSKVQQ 76 (279)
Q Consensus 3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~-~--dg~i~iw~~~~~~~~~~~~~~~~~~~~ 76 (279)
+-+.+||+++. .+..+.. +.+..+..-|...-.+. ++++.. . +++|++|++......
T Consensus 50 ~gL~Vydl~G~---~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~------------ 112 (355)
T 3amr_A 50 SGLVVYSLDGK---MLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT------------ 112 (355)
T ss_dssp TEEEEEETTSC---EEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC------------
T ss_pred CCEEEEcCCCc---EEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc------------
Confidence 55788998764 3444432 45666665551100122 233333 3 578999977421100
Q ss_pred eeecccccc----ccCCccCeEEEEe--cCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCC
Q 023643 77 LLGIEPDGF----LHGHDGPAYDVKF--YGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHK 150 (279)
Q Consensus 77 ~~~~~~~~~----~~~h~~~v~~~~~--~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (279)
...+.. +..-...+..+|+ +|.....+++....+|.+..|++.......... ..+..+...
T Consensus 113 ---l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~-------~lVR~f~lg--- 179 (355)
T 3amr_A 113 ---LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISG-------KKVRAFKMN--- 179 (355)
T ss_dssp ---EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEE-------EEEEEEECS---
T ss_pred ---eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccc-------eEEEEecCC---
Confidence 001100 1011145667777 664432468888889999999985422111100 111111111
Q ss_pred CccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecC-----CCcEEEEee-cC-CcceEEEEEc--CCCc-EEEEec
Q 023643 151 GPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVE-----SSRIKMVFK-GH-SDYLHCIVAR--NSTN-QIVTGS 220 (279)
Q Consensus 151 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-----~~~~~~~~~-~~-~~~i~~i~~~--~~~~-~l~~~~ 220 (279)
.++..+...+....|+++-.+.-|..+|.+ +++.+..+. ++ ...+..|++- ++++ +|++++
T Consensus 180 ---------sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSs 250 (355)
T 3amr_A 180 ---------SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASS 250 (355)
T ss_dssp ---------SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEE
T ss_pred ---------CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEc
Confidence 125788889888899999988777777755 345555442 22 2357788774 4444 555554
Q ss_pred -CCCeEEEEeCC-CCceEEEec
Q 023643 221 -EDGTARIWDCK-SGKCIKVID 240 (279)
Q Consensus 221 -~d~~i~vwd~~-~~~~~~~~~ 240 (279)
.+++..+||.. +.+.+..+.
T Consensus 251 QG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 251 QGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp GGGTEEEEEESSTTCCEEEEEE
T ss_pred CCCCEEEEEECCCCCcEEEEEE
Confidence 67899999996 677777774
No 280
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.24 E-value=0.0008 Score=51.56 Aligned_cols=159 Identities=14% Similarity=0.039 Sum_probs=90.9
Q ss_pred ccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC
Q 023643 90 DGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP 169 (279)
Q Consensus 90 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 169 (279)
...+.+++|.+.+. .++++-...+.|..++++............. ... .....+++++
T Consensus 29 ~~~p~g~~~d~~~~-~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~-----------~~~----------~~p~glavd~ 86 (316)
T 1ijq_A 29 LRNVVALDTEVASN-RIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-----------RDI----------QAPDGLAVDW 86 (316)
T ss_dssp CSSEEEEEEETTTT-EEEEEETTTTEEEEEEC--------CEEEEC-----------SSC----------SCCCEEEEET
T ss_pred CCceEEEEEEeCCC-EEEEEECCCCcEEEEECCCCCCCcccEEEEe-----------CCC----------CCcCEEEEee
Confidence 34578999998765 2555656678899998753100000000000 000 0146889987
Q ss_pred CCCeE-EEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEE-EEecCC-CeEEEEeCCCCceEEEecCCcccc
Q 023643 170 QGGAI-FSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQI-VTGSED-GTARIWDCKSGKCIKVIDPVKDKQ 246 (279)
Q Consensus 170 ~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d-~~i~vwd~~~~~~~~~~~~~~~~~ 246 (279)
.+..| ++-...+.|.++|+........+.........++++|.+..| ++.... +.|...++. |.....+.
T Consensus 87 ~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~------ 159 (316)
T 1ijq_A 87 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLV------ 159 (316)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEE------
T ss_pred cCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEE------
Confidence 55555 444667899999987544433333344567899999965544 444333 788888875 44333331
Q ss_pred ccCcceeeeEEEEcCCCCEEEEE-cCcceEEeC
Q 023643 247 LKGVISCVSCITLDASESWLVRV-RATNYVILF 278 (279)
Q Consensus 247 ~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~w 278 (279)
...-.....++++|++..|+.+ +..+.|..+
T Consensus 160 -~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~ 191 (316)
T 1ijq_A 160 -TENIQWPNGITLDLLSGRLYWVDSKLHSISSI 191 (316)
T ss_dssp -CSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred -ECCCCCceEEEEeccCCEEEEEECCCCeEEEE
Confidence 1122356789999876665544 445566554
No 281
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.23 E-value=0.0008 Score=51.20 Aligned_cols=169 Identities=9% Similarity=0.026 Sum_probs=98.3
Q ss_pred eEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccC------CccCeEEEEe---
Q 023643 28 VFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHG------HDGPAYDVKF--- 98 (279)
Q Consensus 28 v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~~~~--- 98 (279)
-.+++|.+. ++.++++.-..++|..|+...+.. ..+ .+.+ ....+..|.|
T Consensus 15 PE~~~wd~~---~g~~~vs~l~~g~V~~~~~~~~~~-----------------~~~-~~~~~s~~g~~~~~~sGl~~~~~ 73 (334)
T 2p9w_A 15 PEDTIYDRT---RQVFYQSNLYKGRIEVYNPKTQSH-----------------FNV-VIDGASSNGDGEQQMSGLSLLTH 73 (334)
T ss_dssp CSCEEEETT---TTEEEEEETTTTEEEEECTTTCCE-----------------EEE-CCTTTCCSSCCSEEEEEEEESSS
T ss_pred CcCccCcCC---CCEEEEEeccCCEEEEEcCCCCeE-----------------EEE-ecCCccccCCCcceeeEEEEecc
Confidence 346789872 455555555899999999975311 111 1211 1123578999
Q ss_pred cCCCCceEEEEee-------------CCCcEEEeecC---CCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCc
Q 023643 99 YGGNEDALLLSCG-------------DDGRICGWRWK---EFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPEN 162 (279)
Q Consensus 99 ~~~~~~~~l~s~~-------------~dg~i~iw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 162 (279)
.|++. ++++.. .+..|..+|+. +.+. .....+...... +... +... ....
T Consensus 74 D~~gr--L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~-~~~~dL~~~~~~-~~~~-~g~~---------~~~~ 139 (334)
T 2p9w_A 74 DNSKR--LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKP-VWSVNFEKVQDE-FEKK-AGKR---------PFGV 139 (334)
T ss_dssp SSCCE--EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCC-SEEEESHHHHHH-HHHH-HSSC---------CEEE
T ss_pred CCCCc--EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCE-EEEecCcccccc-cccc-cccc---------ccCC
Confidence 57754 555433 25778888976 3211 111111100000 0000 0000 0015
Q ss_pred eeEEEcCCCCeEEEecCC-CeEEEEecCCCcEEEEee--c----CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC
Q 023643 163 NAIAVDPQGGAIFSAAGD-SCAYCWDVESSRIKMVFK--G----HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS 232 (279)
Q Consensus 163 ~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~--~----~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~ 232 (279)
..++..++|+..++++.- +.|...+.... .+..+. . .....+.|+++|+++.|++....|.|..+|+.+
T Consensus 140 nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 140 VQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred ceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 789999999988888877 88888887633 333221 1 112366899999998888776699999999884
No 282
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.22 E-value=0.00084 Score=51.47 Aligned_cols=155 Identities=15% Similarity=0.072 Sum_probs=90.4
Q ss_pred cCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC
Q 023643 91 GPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ 170 (279)
Q Consensus 91 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 170 (279)
.....+.|.+.+. .++.+-...+.|..++++.......... .+ - .....+++++.
T Consensus 35 ~~~~~ld~d~~~~-~lyw~D~~~~~I~r~~~~g~~~~~~~~~-~~-l----------------------~~p~glavd~~ 89 (318)
T 3sov_A 35 EDAAAVDFVFSHG-LIYWSDVSEEAIKRTEFNKTESVQNVVV-SG-L----------------------LSPDGLACDWL 89 (318)
T ss_dssp EEEEEEEEEGGGT-EEEEEETTTTEEEEEETTSSSCCCEEEE-EC-C----------------------SCCCEEEEETT
T ss_pred CccEEEEEEeCCC-EEEEEECCCCcEEEEEccCCCceEEEEc-CC-C----------------------CCccEEEEEcC
Confidence 3467899998655 2555656678888888754311111111 00 0 01367889875
Q ss_pred CCeE-EEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEec--CCCeEEEEeCCCCceEEEecCCccccc
Q 023643 171 GGAI-FSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS--EDGTARIWDCKSGKCIKVIDPVKDKQL 247 (279)
Q Consensus 171 ~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~ 247 (279)
+..| ++-...+.|.++++........+.........++++|.+..|+... ..+.|...++.. .....+-
T Consensus 90 ~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~------- 161 (318)
T 3sov_A 90 GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIII------- 161 (318)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEE-------
T ss_pred CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEE-------
Confidence 5544 5555678999999875433333333445678999998655544443 357888888753 3333331
Q ss_pred cCcceeeeEEEEcCCCCEEEEE-cCcceEEeC
Q 023643 248 KGVISCVSCITLDASESWLVRV-RATNYVILF 278 (279)
Q Consensus 248 ~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~w 278 (279)
...-..-..++++|++..|+.+ +..+.|..+
T Consensus 162 ~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~ 193 (318)
T 3sov_A 162 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS 193 (318)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ECCCCCccEEEEeccCCEEEEEECCCCEEEEE
Confidence 1112345789999866655544 445566544
No 283
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.20 E-value=0.00023 Score=59.37 Aligned_cols=61 Identities=26% Similarity=0.265 Sum_probs=46.0
Q ss_pred CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 180 DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 180 d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
+|.|.-||+.+++.+.+..... ++..-.....+.+++.++.|+.++.||.++|+.+.+++.
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 6889999999999988776432 221111222467788899999999999999999998864
No 284
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.20 E-value=2.5e-05 Score=66.58 Aligned_cols=163 Identities=13% Similarity=0.002 Sum_probs=89.9
Q ss_pred cceEEEEECCCCCCCCCEEEEe-cCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643 26 RTVFRTVWGPSKDGSPDTIVIA-SSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED 104 (279)
Q Consensus 26 ~~v~~~~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 104 (279)
..+..++|.+ ....|..+ ...+.|+.+++...... ......+.........|++.+.+.
T Consensus 406 ~~p~gla~d~----~~~~Ly~sD~~~~~I~~~~~~g~~~~---------------~~~~~~i~~~~~~P~glavD~~~g- 465 (699)
T 1n7d_A 406 RNVVALDTEV----ASNRIYWSDLSQRMICSTQLDRAHGV---------------SSYDTVISRDIQAPDGLAVDWIHS- 465 (699)
T ss_dssp TTCCCCEEET----TTTEEEECCTTTTSBEEEESCCCCC----------------CCCCCBCCSCC--CCCEECCCSSS-
T ss_pred cceEEEcccc----ccCeEEEEecCCCeEEEEecCCCCCC---------------cceEEEEeCCCCCcceEEEEeeCC-
Confidence 4566788988 45555444 45678988888751000 001111111112345677775443
Q ss_pred eEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC--CCe
Q 023643 105 ALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG--DSC 182 (279)
Q Consensus 105 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~ 182 (279)
.++++-...+.|.+.+++.. ....+.... . .....|+++|.+..|+.+.. .+.
T Consensus 466 ~LY~tD~~~~~I~v~d~dg~----~~~~l~~~~-----------~----------~~P~giavDp~~g~ly~td~~~~~~ 520 (699)
T 1n7d_A 466 NIYWTDSVLGTVSVADTKGV----KRKTLFREQ-----------G----------SKPRAIVVDPVHGFMYWTDWGTPAK 520 (699)
T ss_dssp BCEECCTTTSCEEEEBSSSC----CEEEECCCS-----------S----------CCCCCEECCSSSSCCEECCCSSSCC
T ss_pred cEEEEeccCCeEEEEecCCC----ceEEEEeCC-----------C----------CCcceEEEccCCCcEEEcccCCCCe
Confidence 25555566788888886521 111111000 0 01368899997666665543 267
Q ss_pred EEEEecCCCcEEEEeecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCC
Q 023643 183 AYCWDVESSRIKMVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSG 233 (279)
Q Consensus 183 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~ 233 (279)
|..+++........+...-.....|+++|+ ++++++-+..+.|.++++...
T Consensus 521 I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 521 IKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 572 (699)
T ss_dssp EEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred EEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence 888877533222222222345678999986 556666677889999998643
No 285
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.19 E-value=0.00025 Score=53.91 Aligned_cols=165 Identities=13% Similarity=0.075 Sum_probs=103.4
Q ss_pred ccCeEEEEecCCCCceEEEEee-CCCcEEEeecCCCccCcceeeeccCc--ccceEEeecCCCCCccccCCCCCCceeEE
Q 023643 90 DGPAYDVKFYGGNEDALLLSCG-DDGRICGWRWKEFTESKVPINLQGNH--VKPVLDLVNHQHKGPWGALSPVPENNAIA 166 (279)
Q Consensus 90 ~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 166 (279)
.-...+++|.+... .|..++ ..++|..|+...... ....+.+-. .. +...+..|.
T Consensus 12 ~~yPE~~~wd~~~g--~~~vs~l~~g~V~~~~~~~~~~--~~~~~~~~s~~g~------------------~~~~~sGl~ 69 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQ--VFYQSNLYKGRIEVYNPKTQSH--FNVVIDGASSNGD------------------GEQQMSGLS 69 (334)
T ss_dssp TCCCSCEEEETTTT--EEEEEETTTTEEEEECTTTCCE--EEECCTTTCCSSC------------------CSEEEEEEE
T ss_pred ccCCcCccCcCCCC--EEEEEeccCCEEEEEcCCCCeE--EEEecCCccccCC------------------CcceeeEEE
Confidence 33455788988665 555555 789999999753211 111111100 00 000247889
Q ss_pred E---cCCCCeEEEec-------------CCCeEEEEecC---CCcEEEEee--cC-----------CcceEEEEEcCCCc
Q 023643 167 V---DPQGGAIFSAA-------------GDSCAYCWDVE---SSRIKMVFK--GH-----------SDYLHCIVARNSTN 214 (279)
Q Consensus 167 ~---~~~~~~l~~~~-------------~d~~i~i~d~~---~~~~~~~~~--~~-----------~~~i~~i~~~~~~~ 214 (279)
| .|+++++++.. .+..+..||+. +++.+.... .. ......|+..++|+
T Consensus 70 ~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn 149 (334)
T 2p9w_A 70 LLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN 149 (334)
T ss_dssp ESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC
T ss_pred EeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC
Confidence 9 68876666543 26789999999 777665443 11 12478999999999
Q ss_pred EEEEecCC-CeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 215 QIVTGSED-GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 215 ~l~~~~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
..++++.- +.|...+.. |+.+..+..... ........+.|+++|+|..|++....|.+..+|
T Consensus 150 aYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~--~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD 212 (334)
T 2p9w_A 150 SYVAFALGMPAIARVSAD-GKTVSTFAWESG--NGGQRPGYSGITFDPHSNKLIAFGGPRALTAFD 212 (334)
T ss_dssp EEEEEEESSCEEEEECTT-SCCEEEEEECCC--CSSSCCSCSEEEEETTTTEEEEESSSSSEEEEE
T ss_pred EEEeCCCCCCeEEEEeCC-CCEEeeeeecCC--CcccccCcceEEEeCCCCEEEEEcCCCeEEEEc
Confidence 99999888 888877754 443333311110 012234578999999999988887788776654
No 286
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.17 E-value=0.0027 Score=55.06 Aligned_cols=204 Identities=12% Similarity=0.032 Sum_probs=117.2
Q ss_pred ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED 104 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 104 (279)
...|.++...+ ++. |-.|+.++-|..++..+..... +...+. ......+ ....|.++...+++.
T Consensus 312 ~~~v~~i~~D~----~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~~-------~~~~~~l--~~~~v~~i~~d~~g~- 375 (781)
T 3v9f_A 312 NASARYIFQDS----FNN-IWIGTWGGGINFISNAPPTFHT-WSYSPT-------QMNESSL--SNKVVSSVCDDGQGK- 375 (781)
T ss_dssp SSCEEEEEECS----SCC-EEEEEBSSCEEEECSSCCSCEE-EC-----------CCCSSCC--SSSCEEEEEECTTSC-
T ss_pred CCeEEEEEEeC----CCC-EEEEecCCeEEEeCCCCCccee-eccCcc-------ccccCCC--CCcceEEEEEcCCCC-
Confidence 45789998888 666 4556666668888877532110 000000 0000011 235688998888775
Q ss_pred eEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEE
Q 023643 105 ALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAY 184 (279)
Q Consensus 105 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 184 (279)
|..|..++-|..++..... ...+.... ......|.++...+++. |.+|+.++-+.
T Consensus 376 --lWigt~~~Gl~~~~~~~~~----~~~~~~~~------------------~~~~~~v~~i~~d~~g~-lWigt~~~Gl~ 430 (781)
T 3v9f_A 376 --LWIGTDGGGINVFENGKRV----AIYNKENR------------------ELLSNSVLCSLKDSEGN-LWFGTYLGNIS 430 (781)
T ss_dssp --EEEEEBSSCEEEEETTEEE----EECC-----------------------CCCSBEEEEEECTTSC-EEEEETTEEEE
T ss_pred --EEEEeCCCcEEEEECCCCe----EEEccCCC------------------CCCCcceEEEEECCCCC-EEEEeccCCEE
Confidence 6666666678888864311 00000000 00112378888887765 55577767799
Q ss_pred EEecCCCcEEEEee--cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCC
Q 023643 185 CWDVESSRIKMVFK--GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS 262 (279)
Q Consensus 185 i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 262 (279)
.+|..+++...... .....|.++...+++.+.+.. . +-|..||..+++......... . ......|.++..+++
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~-~--~~~~~~i~~i~~d~~ 505 (781)
T 3v9f_A 431 YYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGT-H-AGVFVIDLASKKVIHHYDTSN-S--QLLENFVRSIAQDSE 505 (781)
T ss_dssp EECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEE-T-TEEEEEESSSSSCCEEECTTT-S--SCSCSCEEEEEECTT
T ss_pred EEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEE-C-CceEEEeCCCCeEEecccCcc-c--ccccceeEEEEEcCC
Confidence 99987765443221 134678999888887755544 4 458889988766544332110 0 112357889999999
Q ss_pred CCEEEEEcCcce
Q 023643 263 ESWLVRVRATNY 274 (279)
Q Consensus 263 ~~~l~~~~~d~~ 274 (279)
|.+.+....+|.
T Consensus 506 g~lWigt~~~Gl 517 (781)
T 3v9f_A 506 GRFWIGTFGGGV 517 (781)
T ss_dssp CCEEEEESSSCE
T ss_pred CCEEEEEcCCCE
Confidence 887666544553
No 287
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.15 E-value=0.00012 Score=62.08 Aligned_cols=103 Identities=16% Similarity=0.022 Sum_probs=61.8
Q ss_pred eeEEEcC-CCCeEEEecCCC-----------eEEEEecCCCcEEEEe--ecCCcce-EEEEEcCCCcEEEEecCC-----
Q 023643 163 NAIAVDP-QGGAIFSAAGDS-----------CAYCWDVESSRIKMVF--KGHSDYL-HCIVARNSTNQIVTGSED----- 222 (279)
Q Consensus 163 ~~~~~~~-~~~~l~~~~~d~-----------~i~i~d~~~~~~~~~~--~~~~~~i-~~i~~~~~~~~l~~~~~d----- 222 (279)
.++.+.. ++++++.|+.++ .|.+||..+.+-.... ..+.... .+++..|+++.++.|+.+
T Consensus 402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~ 481 (656)
T 1k3i_A 402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF 481 (656)
T ss_dssp EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence 3444443 566777776432 6888998776544432 1122222 344566899999999864
Q ss_pred ------CeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643 223 ------GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA 271 (279)
Q Consensus 223 ------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 271 (279)
..+.+||..+.+... +... ........+..+.|+++.++.|+.
T Consensus 482 ~~~~~~~~v~~ydp~t~~W~~-~~~~-----~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 482 EDSTPVFTPEIYVPEQDTFYK-QNPN-----SIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCSBCCCCEEEEGGGTEEEE-CCCC-----SSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCcccceEEEcCCCCceee-cCCC-----CCccccccHhhcCCCcEEEecCCC
Confidence 468999998765443 2111 111122234556799999999985
No 288
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.15 E-value=0.00064 Score=50.08 Aligned_cols=167 Identities=10% Similarity=0.054 Sum_probs=95.6
Q ss_pred ccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeE
Q 023643 86 LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAI 165 (279)
Q Consensus 86 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 165 (279)
+.+-.+.+..++|.|++. .++++...++.|...|+. . .......-... .....|
T Consensus 22 l~g~~~~lSGla~~~~~~-~L~aV~d~~~~I~~ld~~-g---~v~~~i~l~g~---------------------~D~EGI 75 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSN-TLFSTINKPAAIVEMTTN-G---DLIRTIPLDFV---------------------KDLETI 75 (255)
T ss_dssp CTTCCSCEEEEEEETTTT-EEEEEEETTEEEEEEETT-C---CEEEEEECSSC---------------------SSEEEE
T ss_pred CCCcccCcceeEEeCCCC-EEEEEECCCCeEEEEeCC-C---CEEEEEecCCC---------------------CChHHe
Confidence 334445799999999865 355557778888888864 2 22222110000 014688
Q ss_pred EEcCCCCeEEEecCCCeEEEEecCCCcE---EEEee------cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC---CC
Q 023643 166 AVDPQGGAIFSAAGDSCAYCWDVESSRI---KMVFK------GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK---SG 233 (279)
Q Consensus 166 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~------~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~---~~ 233 (279)
++.+++.++++.-.++.+.++++..... +.... ........++|+|.++.|.++.......+|.+. ..
T Consensus 76 a~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~ 155 (255)
T 3qqz_A 76 EYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSS 155 (255)
T ss_dssp EECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCS
T ss_pred EEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccC
Confidence 8888887666666678899998765432 22222 123446899999998777777665555555543 11
Q ss_pred ceEEEecCCccccccCcceeeeEEEEcCC-CCEEEEEcCcceEEeCC
Q 023643 234 KCIKVIDPVKDKQLKGVISCVSCITLDAS-ESWLVRVRATNYVILFS 279 (279)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd 279 (279)
..+..+.... ..-..+...+.+++++|. +++++.......+..+|
T Consensus 156 ~~l~i~~~~~-~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d 201 (255)
T 3qqz_A 156 NELHISKDKA-LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVT 201 (255)
T ss_dssp SCCEEEECHH-HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEEC
T ss_pred Cceeeecchh-hccccccCCceeEEEcCCCCeEEEEECCCCeEEEEc
Confidence 1222221100 000112235789999996 45555655666665544
No 289
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.11 E-value=0.0031 Score=53.15 Aligned_cols=214 Identities=8% Similarity=-0.064 Sum_probs=119.4
Q ss_pred ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccc
Q 023643 4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPD 83 (279)
Q Consensus 4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (279)
.|+.-++++........+. .-.....++|++. ++.++.+-..++.|..++++... ..
T Consensus 16 ~I~~i~l~~~~~~~~~~~~-~~~~~~~l~~d~~---~~~lywtD~~~~~I~r~~~~g~~-------------------~~ 72 (628)
T 4a0p_A 16 DIRRISLETNNNNVAIPLT-GVKEASALDFDVT---DNRIYWTDISLKTISRAFMNGSA-------------------LE 72 (628)
T ss_dssp EEEEEESSCTTCEEECCCC-SCSCEEEEEEETT---TTEEEEEETTTTEEEEEETTSCS-------------------CE
T ss_pred cEEEEECCCCCcceEEEcC-CCCceEEEEEECC---CCEEEEEECCCCeEEEEECCCCC-------------------cE
Confidence 4555666554321111111 2346789999983 45555666678899988887521 11
Q ss_pred ccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCce
Q 023643 84 GFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENN 163 (279)
Q Consensus 84 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 163 (279)
..+..-......|++.+.+. ++.++-...+.|.+.+++.. ...... ...- ....
T Consensus 73 ~v~~~g~~~P~GlAvD~~~~-~LY~tD~~~~~I~v~~~dG~-~~~~l~--~~~l----------------------~~P~ 126 (628)
T 4a0p_A 73 HVVEFGLDYPEGMAVDWLGK-NLYWADTGTNRIEVSKLDGQ-HRQVLV--WKDL----------------------DSPR 126 (628)
T ss_dssp EEECSSCSCCCEEEEETTTT-EEEEEETTTTEEEEEETTST-TCEEEE--CSSC----------------------CCEE
T ss_pred EEEeCCCCCcceEEEEeCCC-EEEEEECCCCEEEEEecCCC-cEEEEE--eCCC----------------------CCcc
Confidence 11111123456788876554 35566666788888887521 111110 0100 0147
Q ss_pred eEEEcCCCCeEEEecC--CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCc-EEEEecCCCeEEEEeCCCCceEEEec
Q 023643 164 AIAVDPQGGAIFSAAG--DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTN-QIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 164 ~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
.|+++|....|+.... .+.|...++......... ..-.....|+++++++ ++++-...+.|..+|+..... ..+.
T Consensus 127 ~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~ 204 (628)
T 4a0p_A 127 ALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIA 204 (628)
T ss_dssp EEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE
T ss_pred cEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEee
Confidence 8999996666666542 567888887644333323 3445678999999654 455556778899999865433 3331
Q ss_pred CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643 241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL 277 (279)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 277 (279)
.......++++.. +..+.+-...+.|..
T Consensus 205 --------~~l~~P~glav~~-~~ly~tD~~~~~I~~ 232 (628)
T 4a0p_A 205 --------DDLPHPFGLTQYQ-DYIYWTDWSRRSIER 232 (628)
T ss_dssp --------ECCSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred --------ccCCCceEEEEEC-CEEEEecCCCCEEEE
Confidence 1111234666654 444444444555543
No 290
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.06 E-value=0.0033 Score=52.91 Aligned_cols=183 Identities=10% Similarity=-0.078 Sum_probs=102.1
Q ss_pred CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccc
Q 023643 3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEP 82 (279)
Q Consensus 3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (279)
..|+.-++++...... ..........+++|++. ++.++.+=...+.|..++++... ..
T Consensus 18 ~~I~~i~~~~~~~~~~-~~~~~~~~~~~ld~~~~---~~~ly~sD~~~~~I~r~~~~g~~------------------~~ 75 (619)
T 3s94_A 18 RDLRLVDATNGKENAT-IVVGGLEDAAAVDFVFS---HGLIYWSDVSEEAIKRTEFNKTE------------------SV 75 (619)
T ss_dssp SBEEEECCC----------CBCCSCEEEEEEETT---TTEEEEEETTTTEEEEEEC-----------------------C
T ss_pred ccEEEEeCCCCcceEE-EEEcCCCceEEEEEEeC---CCEEEEEECCCCeEEEEEccCCC------------------ce
Confidence 4566667665321111 11222345789999982 44444555567788888887521 01
Q ss_pred cccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCc
Q 023643 83 DGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPEN 162 (279)
Q Consensus 83 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 162 (279)
...+...-.....+++.+.+. +++++-...+.|.+.+++.. ...... ...- . ..
T Consensus 76 ~~v~~~~~~~P~GlAvD~~~~-~ly~~d~~~~~I~v~~~dG~-~~~~l~--~~~l------------~----------~P 129 (619)
T 3s94_A 76 QNVVVSGLLSPDGLACDWLGE-KLYWTDSETNRIEVSNLDGS-LRKVLF--WQEL------------D----------QP 129 (619)
T ss_dssp EEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSC-SCEEEE--CSSC------------S----------CC
T ss_pred EEEEeCCCCCcCeEEEEecCC-EEEEEeCCCCEEEEEECCCC-CEEEEE--eCCC------------C----------CC
Confidence 112222224578899988655 35666667789999987531 111111 0100 0 13
Q ss_pred eeEEEcCCCCeEEEecC--CCeEEEEecCCCcEEEEeecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCC
Q 023643 163 NAIAVDPQGGAIFSAAG--DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSG 233 (279)
Q Consensus 163 ~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~ 233 (279)
..|+++|.+..|+.... .+.|...++............-.....|+++++ ++++++-...+.|..+|+...
T Consensus 130 ~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~ 203 (619)
T 3s94_A 130 RAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT 203 (619)
T ss_dssp CCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred ceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence 68999997666665543 467777777633333333334456789999986 455555566788999998643
No 291
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.98 E-value=0.0029 Score=49.09 Aligned_cols=98 Identities=11% Similarity=0.077 Sum_probs=62.5
Q ss_pred ceeEEEcCCCCeEEEec-----------------CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEE-ecCCC
Q 023643 162 NNAIAVDPQGGAIFSAA-----------------GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVT-GSEDG 223 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~-----------------~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~d~ 223 (279)
.+.+.+.++|...++.. ..|.|+.+|.. +.. .+...-...+.++|+|+++.|.. -+..+
T Consensus 167 pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~ 243 (355)
T 3sre_A 167 VNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVR-VVAEGFDFANGINISPDGKYVYIAELLAH 243 (355)
T ss_dssp EEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCE-EEEEEESSEEEEEECTTSSEEEEEEGGGT
T ss_pred CceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEE-EeecCCcccCcceECCCCCEEEEEeCCCC
Confidence 58899999988666643 13566666653 322 22223345689999999876554 45688
Q ss_pred eEEEEeCCC-CceE--EEecCCccccccCcceeeeEEEEcC-CCCEEEEEcC
Q 023643 224 TARIWDCKS-GKCI--KVIDPVKDKQLKGVISCVSCITLDA-SESWLVRVRA 271 (279)
Q Consensus 224 ~i~vwd~~~-~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 271 (279)
.|..|++.. ++.. ..+. .....-.+++++ +|++.+++..
T Consensus 244 ~I~~~~~~~~g~l~~~~~~~---------~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 244 KIHVYEKHANWTLTPLRVLS---------FDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp EEEEEEECTTSCEEEEEEEE---------CSSEEEEEEECTTTCCEEEEEES
T ss_pred eEEEEEECCCCcEecCEEEe---------CCCCCceEEEeCCCCcEEEEecC
Confidence 999999863 3322 1221 124567788998 5888776643
No 292
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.98 E-value=0.0066 Score=52.48 Aligned_cols=157 Identities=13% Similarity=0.048 Sum_probs=90.4
Q ss_pred ccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccC-cceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEc
Q 023643 90 DGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTES-KVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVD 168 (279)
Q Consensus 90 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 168 (279)
...+..|+|.+... .++++-...+.|+.++++..... .....+... . .....|+++
T Consensus 423 ~~~~~gl~~d~~~~-~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~------------l----------~~P~GLAvD 479 (791)
T 3m0c_C 423 LRNVVALDTEVASN-RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD------------I----------QAPDGLAVD 479 (791)
T ss_dssp CSSEEEEEEETTTT-EEEEEETTTTEEEEEEC--------CEEEECSS------------C----------SCCCEEEEE
T ss_pred CCceEEEeecccCC-eeEEeeccceeEEEEeccCCCCCcceeEEEecC------------C----------CCcceeeee
Confidence 44578899998655 25556566788888887532110 000011100 0 124688999
Q ss_pred CCCCeEE-EecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEE-EEecCC-CeEEEEeCCCCceEEEecCCccc
Q 023643 169 PQGGAIF-SAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQI-VTGSED-GTARIWDCKSGKCIKVIDPVKDK 245 (279)
Q Consensus 169 ~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d-~~i~vwd~~~~~~~~~~~~~~~~ 245 (279)
+.+..|+ +-...+.|.+.++........+.........|+++|.+.+| ++-... +.|.+.++........+
T Consensus 480 ~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv------ 553 (791)
T 3m0c_C 480 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV------ 553 (791)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE------
T ss_pred ecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE------
Confidence 8776555 44567899999997554444444444568999999975444 443333 78998888644333333
Q ss_pred cccCcceeeeEEEEcCCCCEEEEE-cCcceEEe
Q 023643 246 QLKGVISCVSCITLDASESWLVRV-RATNYVIL 277 (279)
Q Consensus 246 ~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~ 277 (279)
...-....+|++++.+..|+.+ ...+.|..
T Consensus 554 --~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~ 584 (791)
T 3m0c_C 554 --TENIQWPNGITLDLLSGRLYWVDSKLHSISS 584 (791)
T ss_dssp --CSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred --eCCCCCceEEEEecCCCeEEEEeCCCCcEEE
Confidence 2222456788998766655554 33444543
No 293
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.94 E-value=0.0051 Score=49.90 Aligned_cols=69 Identities=12% Similarity=0.089 Sum_probs=47.0
Q ss_pred ceeEEEcCCCC-eEEEecCCCeEEEEecC-------CCcE-----------EEE-ee-cCCcceEEEEEcCCCcE-EEEe
Q 023643 162 NNAIAVDPQGG-AIFSAAGDSCAYCWDVE-------SSRI-----------KMV-FK-GHSDYLHCIVARNSTNQ-IVTG 219 (279)
Q Consensus 162 i~~~~~~~~~~-~l~~~~~d~~i~i~d~~-------~~~~-----------~~~-~~-~~~~~i~~i~~~~~~~~-l~~~ 219 (279)
...++++|++. ++++-..++.|..+|+. ++.. ... +. ......+.|+|+|+|++ +++-
T Consensus 249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD 328 (496)
T 3kya_A 249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGV 328 (496)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEe
Confidence 36889999555 45556677889999997 4543 112 22 12345689999999995 5555
Q ss_pred cCCCeEEEEeC
Q 023643 220 SEDGTARIWDC 230 (279)
Q Consensus 220 ~~d~~i~vwd~ 230 (279)
+....|+.++.
T Consensus 329 ~~~h~I~kid~ 339 (496)
T 3kya_A 329 INNHYFMRSDY 339 (496)
T ss_dssp TTTTEEEEEEE
T ss_pred CCCCEEEEEec
Confidence 67788988654
No 294
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.93 E-value=0.003 Score=52.79 Aligned_cols=76 Identities=13% Similarity=0.218 Sum_probs=56.1
Q ss_pred eEEEcCCCCeEEEecCC----------------CeEEEEecCCCcEEEEeecCC----------cceEEEEEc-CCC---
Q 023643 164 AIAVDPQGGAIFSAAGD----------------SCAYCWDVESSRIKMVFKGHS----------DYLHCIVAR-NST--- 213 (279)
Q Consensus 164 ~~~~~~~~~~l~~~~~d----------------~~i~i~d~~~~~~~~~~~~~~----------~~i~~i~~~-~~~--- 213 (279)
.+++.+...+++.++.+ +.|.-+|.++++.+..++... .++. +... .+|
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~ 323 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR 323 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence 45677777788887765 389999999999998876422 1222 2222 456
Q ss_pred cEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 214 NQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 214 ~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
..++.++.+|.+.++|.++|+.+....
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCcEEEEEECCCCCEeeccc
Confidence 567889999999999999999887764
No 295
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.91 E-value=0.0042 Score=47.79 Aligned_cols=108 Identities=13% Similarity=0.045 Sum_probs=63.8
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec----CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEE
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG----HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIK 237 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~ 237 (279)
+..+.+.+++..+ .++.+|.+++.+.+.++.-..+.. +...+.++++.+++..++++. +|.|. +....|+.-.
T Consensus 207 ~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~-~S~DgG~tW~ 283 (327)
T 2xbg_A 207 LHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALL-CSQDGGQTWQ 283 (327)
T ss_dssp EEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEE-EESSTTSSCE
T ss_pred cceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEE-EeCCCCcccE
Confidence 5788888887655 455578887764332433222221 223588999988877777665 66663 4444555444
Q ss_pred EecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 238 VIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
.+... ......+..+.|.+++. +++++.+|.|.-+
T Consensus 284 ~~~~~-----~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~ 318 (327)
T 2xbg_A 284 QDVDV-----KKVPSNFYKILFFSPDQ-GFILGQKGILLRY 318 (327)
T ss_dssp ECGGG-----TTSSSCCCEEEEEETTE-EEEECSTTEEEEE
T ss_pred EcCcc-----CCCCCCeEEEEEECCCc-eEEEcCCceEEEE
Confidence 44211 11234567888875555 5566678877654
No 296
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.81 E-value=0.0004 Score=59.28 Aligned_cols=164 Identities=8% Similarity=-0.009 Sum_probs=91.5
Q ss_pred eEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEE
Q 023643 28 VFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALL 107 (279)
Q Consensus 28 v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 107 (279)
...|++.+. .+.++++-...+.|.++++.... ....+.........|++.|.+. .++
T Consensus 455 P~glavD~~---~g~LY~tD~~~~~I~v~d~dg~~-------------------~~~l~~~~~~~P~giavDp~~g-~ly 511 (699)
T 1n7d_A 455 PDGLAVDWI---HSNIYWTDSVLGTVSVADTKGVK-------------------RKTLFREQGSKPRAIVVDPVHG-FMY 511 (699)
T ss_dssp CCCEECCCS---SSBCEECCTTTSCEEEEBSSSCC-------------------EEEECCCSSCCCCCEECCSSSS-CCE
T ss_pred cceEEEEee---CCcEEEEeccCCeEEEEecCCCc-------------------eEEEEeCCCCCcceEEEccCCC-cEE
Confidence 446777752 45555665667788888887521 1111111123356788888654 133
Q ss_pred EEeeC-CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe-cCCCeEEE
Q 023643 108 LSCGD-DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA-AGDSCAYC 185 (279)
Q Consensus 108 ~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i 185 (279)
++-.. .+.|...+++.. ....+. ... ....+.|+|+|++..|+.+ ...+.|..
T Consensus 512 ~td~~~~~~I~~~~~dG~-~~~~l~--~~~----------------------l~~PnGlavd~~~~~LY~aD~~~~~I~~ 566 (699)
T 1n7d_A 512 WTDWGTPAKIKKGGLNGV-DIYSLV--TEN----------------------IQWPNGITLDLLSGRLYWVDSKLHSISS 566 (699)
T ss_dssp ECCCSSSCCEEBCCSSSC-CCCEES--CSS----------------------CSSCCCEEECTTTCCEEEEETTTTEEEE
T ss_pred EcccCCCCeEEEEeCCCC-CeeEEE--eCC----------------------CCCccEEEEeccCCEEEEEecCCCeEEE
Confidence 33322 266777665421 110000 000 0014689999986666554 45678999
Q ss_pred EecCCCcEEEEee--cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643 186 WDVESSRIKMVFK--GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 186 ~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 240 (279)
+|+........+. ........|++..+ .++++....+.|..++..+++.+..+.
T Consensus 567 ~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 567 IDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp ECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred EccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 9987433222222 11233455666544 566666778899999988888777764
No 297
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.80 E-value=0.0069 Score=50.56 Aligned_cols=102 Identities=16% Similarity=0.143 Sum_probs=65.5
Q ss_pred CCCC---eEEEecCCCeEEEEecCCCcEEEEeecCCc--ce---------------------------------------
Q 023643 169 PQGG---AIFSAAGDSCAYCWDVESSRIKMVFKGHSD--YL--------------------------------------- 204 (279)
Q Consensus 169 ~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i--------------------------------------- 204 (279)
.+++ .++.++.+|.++++|..+++++..+..... ..
T Consensus 331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~G 410 (582)
T 1flg_A 331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLG 410 (582)
T ss_dssp SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTC
T ss_pred CCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCcc
Confidence 4564 678899999999999999998876653310 00
Q ss_pred ----EEEEEcCCCcEEEEec---------------------------------CCCeEEEEeCCCCceEEEecCCccccc
Q 023643 205 ----HCIVARNSTNQIVTGS---------------------------------EDGTARIWDCKSGKCIKVIDPVKDKQL 247 (279)
Q Consensus 205 ----~~i~~~~~~~~l~~~~---------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~ 247 (279)
..++++|+...+++.. .+|.|..||+.+++.+.+.....
T Consensus 411 g~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~---- 486 (582)
T 1flg_A 411 GKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL---- 486 (582)
T ss_dssp SSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS----
T ss_pred ccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC----
Confidence 1245666544433321 36889999999999887764211
Q ss_pred cCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643 248 KGVISCVSCITLDASESWLVRVRATNYVILFS 279 (279)
Q Consensus 248 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 279 (279)
++..-.....+.+++.|+.|+.++.||
T Consensus 487 -----~~~~g~~~tagglvf~g~~dg~l~A~D 513 (582)
T 1flg_A 487 -----PLWAGVLATAGNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp -----CCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred -----CCcccceEeCCCEEEEECCCCcEEEEE
Confidence 111111112366777789999998875
No 298
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.78 E-value=0.0075 Score=47.52 Aligned_cols=114 Identities=11% Similarity=0.115 Sum_probs=78.1
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCc------------EEEEeec------CCcceEEEEEcCC---CcEEEEec
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSR------------IKMVFKG------HSDYLHCIVARNS---TNQIVTGS 220 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------------~~~~~~~------~~~~i~~i~~~~~---~~~l~~~~ 220 (279)
|..+..+|+|.+|+..+ +..|.|..+..+. ..+.+.- ...+|..+.|+|- +..|++-.
T Consensus 68 i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt 146 (452)
T 3pbp_A 68 TFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK 146 (452)
T ss_dssp TCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred eeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence 67899999999998876 5678888876221 1223332 2467999999994 56899999
Q ss_pred CCCeEEEEeCCCCc--eEEEecCCcc-ccccCcceeeeEEEEcCCCCEEEEE--cCcceEEe
Q 023643 221 EDGTARIWDCKSGK--CIKVIDPVKD-KQLKGVISCVSCITLDASESWLVRV--RATNYVIL 277 (279)
Q Consensus 221 ~d~~i~vwd~~~~~--~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~--~~d~~i~~ 277 (279)
.|+.|++||+.... +. .++.... ..+......|.+++|.+++-.|... +..|-|+-
T Consensus 147 sD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 147 EDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp TTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred cCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 99999999998632 22 3331110 1122334678999999988766664 47787753
No 299
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.56 E-value=0.01 Score=44.85 Aligned_cols=93 Identities=11% Similarity=0.060 Sum_probs=49.6
Q ss_pred CCCeEEEecCC-----CeEEEEecCCCcEEEE--eecCCcceEEEEEcCCCcEEEEecCC-----CeEEEEeCCCCceEE
Q 023643 170 QGGAIFSAAGD-----SCAYCWDVESSRIKMV--FKGHSDYLHCIVARNSTNQIVTGSED-----GTARIWDCKSGKCIK 237 (279)
Q Consensus 170 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~~ 237 (279)
++..++.|+.+ ..+.+||+.+.+-... +........++.+ +++.++.|+.+ ..+.+||+.+.+...
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 236 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT 236 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence 55666666543 4588999887643332 2111111122222 56777888764 468999998876544
Q ss_pred EecCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643 238 VIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT 272 (279)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 272 (279)
.-..+ ........+.+ ++++++.|+.+
T Consensus 237 ~~~~p------~~r~~~~~~~~--~~~i~v~GG~~ 263 (301)
T 2vpj_A 237 VTSMT------TPRCYVGATVL--RGRLYAIAGYD 263 (301)
T ss_dssp ECCCS------SCCBSCEEEEE--TTEEEEECCBC
T ss_pred CCCCC------CcccceeEEEE--CCEEEEEcCcC
Confidence 32211 11111122223 56777777654
No 300
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.53 E-value=0.024 Score=45.99 Aligned_cols=170 Identities=11% Similarity=0.067 Sum_probs=92.2
Q ss_pred eEEEEecCCCCceEEEEeeCCCcEEEeecC-------CCccCccee-eeccCcccceEEeecCCCCCccccCCCCCCcee
Q 023643 93 AYDVKFYGGNEDALLLSCGDDGRICGWRWK-------EFTESKVPI-NLQGNHVKPVLDLVNHQHKGPWGALSPVPENNA 164 (279)
Q Consensus 93 v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 164 (279)
...++.+|++. .++++-..++.|..+|+. +........ ...+ ....+... ... ...+.
T Consensus 249 p~giavdp~~g-~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g-~~~~l~~~--~~~----------~~p~~ 314 (496)
T 3kya_A 249 CNGATIHPING-ELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN-TFKQLFTI--ADP----------SWEFQ 314 (496)
T ss_dssp CCCEEECTTTC-CEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT-TEEEEEEC--SSS----------SCCEE
T ss_pred ceEEEEcCCCC-eEEEEECCCCEEEEEecccccccccCceeeccccccccc-ccceeEec--CCC----------CCceE
Confidence 45678899544 266677788889999975 221100000 0000 00011111 000 11378
Q ss_pred EEEcCCCCeEEEe-cCCCeEEEEecC--CCcE--EEEeecC---C------------cceE-EEEEc-------CCCcEE
Q 023643 165 IAVDPQGGAIFSA-AGDSCAYCWDVE--SSRI--KMVFKGH---S------------DYLH-CIVAR-------NSTNQI 216 (279)
Q Consensus 165 ~~~~~~~~~l~~~-~~d~~i~i~d~~--~~~~--~~~~~~~---~------------~~i~-~i~~~-------~~~~~l 216 (279)
++|+|+++.|+.+ +....|+.++.. .+.. ...+-+. . .... .++.. +++.++
T Consensus 315 ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~ly 394 (496)
T 3kya_A 315 IFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFY 394 (496)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEE
T ss_pred EEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEE
Confidence 9999999965554 556788886653 3321 1222211 0 1234 45554 567777
Q ss_pred EEecCCCeEEEEeCCCCceEEEecCCcc--------------c--cccCcceeeeEEEEcCC-CCEEEEEcCcceEEeC
Q 023643 217 VTGSEDGTARIWDCKSGKCIKVIDPVKD--------------K--QLKGVISCVSCITLDAS-ESWLVRVRATNYVILF 278 (279)
Q Consensus 217 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~--------------~--~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~w 278 (279)
++=.....|+.++ .+|. +.++...-. . .....-..-..|+++++ +.++++=..+..|+.+
T Consensus 395 VaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki 471 (496)
T 3kya_A 395 FVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTI 471 (496)
T ss_dssp EEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 8777888999998 4664 344432100 0 00111234678999997 7777776777788765
No 301
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.52 E-value=0.017 Score=43.90 Aligned_cols=193 Identities=11% Similarity=0.125 Sum_probs=109.8
Q ss_pred Cceeeeccccccccceeeeeec----ccceEEEEECCCCCCCCCEEEEec-------CCCcEEEEeCCCCCcccccccCC
Q 023643 3 GDSTNWDEDAYRKSILKEREIL----TRTVFRTVWGPSKDGSPDTIVIAS-------SDGSITSYSIPSCISKLPLGLSN 71 (279)
Q Consensus 3 G~v~iw~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~l~~~~-------~dg~i~iw~~~~~~~~~~~~~~~ 71 (279)
..|.-|++++.. ...+.+.-| ...|..-..++ +.++++..+ -.|.+.+|..+.
T Consensus 126 taVyHWs~~~~s-~P~kvFdR~~~L~~~QIInY~~d~----~~kW~~l~GI~~~~~~v~G~mQLYS~er----------- 189 (365)
T 2xzh_A 126 NAVYHWSMEGES-QPVKMFDRHSSLAGCQIINYRTDA----KQKWLLLTGISAQQNRVVGAMQLYSVDR----------- 189 (365)
T ss_dssp SEEEEEESSTTC-CCEEEEECCGGGTTCEEEEEEECT----TSCEEEEEEEEEETTEEEEEEEEEETTT-----------
T ss_pred CcEEEEcccCCC-CCceeeecchhcccceEEEEEECC----CCCEEEEEeEeccCCccceeEEEEeecc-----------
Confidence 356778776532 233333333 35677777777 778766543 236788999885
Q ss_pred cccceeeeccccccccCCccCeEEEEecCCCC-ceEEEEeeCC---CcEEEeecCCCccCcceeeeccCcccceEEee-c
Q 023643 72 SKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE-DALLLSCGDD---GRICGWRWKEFTESKVPINLQGNHVKPVLDLV-N 146 (279)
Q Consensus 72 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 146 (279)
+..+.+.+|...-..+....+.. ..+|..+... +.+.|-++........ .+ . +...++. .
T Consensus 190 ---------~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~--~f---~-kk~vdi~fp 254 (365)
T 2xzh_A 190 ---------KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ--PF---P-KKAVDVFFP 254 (365)
T ss_dssp ---------TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCC--CC---C-CEEEEECCC
T ss_pred ---------cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCC--Cc---c-cccceeeCC
Confidence 33455667765443333322211 1234433332 5788888743211111 00 0 1111211 1
Q ss_pred CCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEE
Q 023643 147 HQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTAR 226 (279)
Q Consensus 147 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~ 226 (279)
++... .-..++..++....++..+.-|.|++||+.++.++..-+-....|..-+.+....-++.....|.|.
T Consensus 255 pea~~--------DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl 326 (365)
T 2xzh_A 255 PEAQN--------DFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 326 (365)
T ss_dssp TTCTT--------CCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEE
T ss_pred ccccC--------CceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEE
Confidence 11111 1235788888888999999999999999999999988777777776666555444444444666665
Q ss_pred EEeCCCCc
Q 023643 227 IWDCKSGK 234 (279)
Q Consensus 227 vwd~~~~~ 234 (279)
--.+...+
T Consensus 327 ~v~v~~~~ 334 (365)
T 2xzh_A 327 SVCVEEEN 334 (365)
T ss_dssp EEEECTTT
T ss_pred EEEECccc
Confidence 54444433
No 302
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.47 E-value=0.02 Score=43.38 Aligned_cols=93 Identities=10% Similarity=0.053 Sum_probs=48.6
Q ss_pred CCCeEEEecC---------CCeEEEEecCCCcEEEE--eecCCcceEEEEEcCCCcEEEEecCC-----CeEEEEeCCCC
Q 023643 170 QGGAIFSAAG---------DSCAYCWDVESSRIKMV--FKGHSDYLHCIVARNSTNQIVTGSED-----GTARIWDCKSG 233 (279)
Q Consensus 170 ~~~~l~~~~~---------d~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~ 233 (279)
++..++.|+. -..+.+||+.+.+-... +......-..+.+ +++.++.|+.+ ..+.+||+.+.
T Consensus 149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 4555555543 34588999987643322 2111111122222 56777777754 35889999887
Q ss_pred ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643 234 KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT 272 (279)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 272 (279)
+-...-.. ........++.+ ++++++.|+.+
T Consensus 227 ~W~~~~~~------p~~r~~~~~~~~--~~~i~v~GG~~ 257 (306)
T 3ii7_A 227 EWKMVSPM------PWKGVTVKCAAV--GSIVYVLAGFQ 257 (306)
T ss_dssp EEEECCCC------SCCBSCCEEEEE--TTEEEEEECBC
T ss_pred cEEECCCC------CCCccceeEEEE--CCEEEEEeCcC
Confidence 64433211 111112223333 67778888754
No 303
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.41 E-value=0.027 Score=43.69 Aligned_cols=106 Identities=8% Similarity=0.064 Sum_probs=61.7
Q ss_pred eeEEEcC--CCC-eEEEecC---CCeEEEEecCCC-c---EEEEeecC-CcceEEEEEcCCCcEEEEecC----------
Q 023643 163 NAIAVDP--QGG-AIFSAAG---DSCAYCWDVESS-R---IKMVFKGH-SDYLHCIVARNSTNQIVTGSE---------- 221 (279)
Q Consensus 163 ~~~~~~~--~~~-~l~~~~~---d~~i~i~d~~~~-~---~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~---------- 221 (279)
..+.+.+ ++. +|+++.. +..|.+|++... . .+..+.+. -.....+.+.++|.++++...
T Consensus 115 hGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~ 194 (355)
T 3sre_A 115 HGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSW 194 (355)
T ss_dssp EEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHH
T ss_pred eeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccc
Confidence 4566544 343 4544422 467888777643 2 23334332 245789999999998887651
Q ss_pred -------CCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEE-cCcceEEeCC
Q 023643 222 -------DGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV-RATNYVILFS 279 (279)
Q Consensus 222 -------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~wd 279 (279)
.|.|.-+|. ++.. .+ ...-..-+.++|+||++.|+.+ +..+.|..|+
T Consensus 195 e~~~~~~~g~vyr~d~--~~~~-~~--------~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~ 249 (355)
T 3sre_A 195 EMHLGLAWSFVTYYSP--NDVR-VV--------AEGFDFANGINISPDGKYVYIAELLAHKIHVYE 249 (355)
T ss_dssp HHHTTCCCEEEEEECT--TCCE-EE--------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred hhhccCCccEEEEEEC--CeEE-Ee--------ecCCcccCcceECCCCCEEEEEeCCCCeEEEEE
Confidence 244555554 3222 22 1112345889999999877765 4566777663
No 304
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.39 E-value=0.025 Score=42.77 Aligned_cols=66 Identities=11% Similarity=0.104 Sum_probs=37.7
Q ss_pred CCCeEEEecC-------CCeEEEEecCCCcEEEE--eecCCcceEEEEEcCCCcEEEEecCC-----CeEEEEeCCCCce
Q 023643 170 QGGAIFSAAG-------DSCAYCWDVESSRIKMV--FKGHSDYLHCIVARNSTNQIVTGSED-----GTARIWDCKSGKC 235 (279)
Q Consensus 170 ~~~~l~~~~~-------d~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~ 235 (279)
++..++.|+. ...+.+||+.+.+-... +.........+.+ +++.++.|+.+ ..+.+||+.+.+.
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 232 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAW 232 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCE
Confidence 4555555543 24588999887643332 2211111222222 57778888764 3689999988765
Q ss_pred EE
Q 023643 236 IK 237 (279)
Q Consensus 236 ~~ 237 (279)
..
T Consensus 233 ~~ 234 (302)
T 2xn4_A 233 RQ 234 (302)
T ss_dssp EE
T ss_pred ee
Confidence 44
No 305
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.31 E-value=0.059 Score=45.40 Aligned_cols=160 Identities=11% Similarity=0.007 Sum_probs=93.2
Q ss_pred cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643 26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA 105 (279)
Q Consensus 26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 105 (279)
..+.+++|.+. ++.++++-...+.|+.++++... ....+...-.....+++.+.+. +
T Consensus 349 ~~~~~ld~d~~---~~~ly~sD~~~~~I~r~~~~g~~-------------------~~~v~~~~~~~p~GlAvD~~~~-~ 405 (619)
T 3s94_A 349 RHAIAIDYDPV---EGYIYWTDDEVRAIRRSFIDGSG-------------------SQFVVTAQIAHPDGIAVDWVAR-N 405 (619)
T ss_dssp SSEEEEEEETT---TTEEEEEETTTTEEEEEETTSCS-------------------CEEEECSSCSCCCEEEEETTTT-E
T ss_pred CccEEEEEEcC---CCeEEEEeCCCCeEEEEEcCCCc-------------------cEEEEECCCCCcCceEEecccC-c
Confidence 45678889882 44555555567888888887521 1111222223456788876444 3
Q ss_pred EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC--CCeE
Q 023643 106 LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG--DSCA 183 (279)
Q Consensus 106 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~i 183 (279)
+.++-+..+.|.+.+++.. ... .+.... - .....|+++|....|+.... ...|
T Consensus 406 lY~tD~~~~~I~v~~~~G~-~~~---~l~~~~-----------l----------~~P~~iavdp~~G~ly~tD~g~~~~I 460 (619)
T 3s94_A 406 LYWTDTGTDRIEVTRLNGT-MRK---ILISED-----------L----------EEPRAIVLDPMVGYMYWTDWGEIPKI 460 (619)
T ss_dssp EEEEETTTTEEEEEETTSC-SCE---EEECTT-----------C----------CSEEEEEEETTTTEEEEEECSSSCEE
T ss_pred EEEEeCCCCcEEEEeCCCC-eEE---EEEECC-----------C----------CCeeeEEEEcCCCcEEEecCCCCCEE
Confidence 6666667788988887532 111 111000 0 12479999997555555442 3677
Q ss_pred EEEecCCCcEEEEeecCCcceEEEEEcCCCcE-EEEecCCCeEEEEeCCCC
Q 023643 184 YCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ-IVTGSEDGTARIWDCKSG 233 (279)
Q Consensus 184 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~d~~i~vwd~~~~ 233 (279)
...+++...........-.....+++++++.. .++=+..+.|..+++...
T Consensus 461 ~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~ 511 (619)
T 3s94_A 461 ERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT 511 (619)
T ss_dssp EEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSC
T ss_pred EEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCC
Confidence 77776533222222333456789999986544 455556778999998543
No 306
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.20 E-value=0.044 Score=41.69 Aligned_cols=93 Identities=11% Similarity=0.020 Sum_probs=48.7
Q ss_pred CCCeEEEecC------CCeEEEEecCCCcEEEE--eecCCcceEEEEEcCCCcEEEEecCCC-----eEEEEeCCCCceE
Q 023643 170 QGGAIFSAAG------DSCAYCWDVESSRIKMV--FKGHSDYLHCIVARNSTNQIVTGSEDG-----TARIWDCKSGKCI 236 (279)
Q Consensus 170 ~~~~l~~~~~------d~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d~-----~i~vwd~~~~~~~ 236 (279)
+++.++.|+. -..+.+||+.+.+-... +......-.++.+ +++.++.|+.++ .+.+||+.+.+..
T Consensus 148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence 4556666654 24689999887643321 2111111122222 567777777654 4889999887654
Q ss_pred EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643 237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT 272 (279)
Q Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 272 (279)
..-..+ ........+.+ ++++++.|+.+
T Consensus 226 ~~~~~p------~~r~~~~~~~~--~~~l~v~GG~~ 253 (315)
T 4asc_A 226 PFEAFP------QERSSLSLVSL--VGTLYAIGGFA 253 (315)
T ss_dssp EECCCS------SCCBSCEEEEE--TTEEEEEEEEE
T ss_pred ECCCCC------CcccceeEEEE--CCEEEEECCcc
Confidence 432211 11111122233 56777777654
No 307
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.18 E-value=0.045 Score=41.49 Aligned_cols=66 Identities=14% Similarity=0.107 Sum_probs=38.2
Q ss_pred CCCeEEEecCC-----CeEEEEecCCCcEEEE--eecCCcceEEEEEcCCCcEEEEecCC-----CeEEEEeCCCCceEE
Q 023643 170 QGGAIFSAAGD-----SCAYCWDVESSRIKMV--FKGHSDYLHCIVARNSTNQIVTGSED-----GTARIWDCKSGKCIK 237 (279)
Q Consensus 170 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~~ 237 (279)
++.+++.|+.+ ..+.+||+.+.+-... +......-.++.+ +++.++.|+.+ ..+.+||+.+.+...
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 245 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF 245 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence 45566666543 4588999887643321 1111111222223 57777888764 558999998876543
No 308
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.17 E-value=0.0014 Score=46.73 Aligned_cols=106 Identities=7% Similarity=-0.068 Sum_probs=62.9
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcE------EEEee-cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCc
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRI------KMVFK-GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGK 234 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~------~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~ 234 (279)
+..++|+|++.+.++ .+|.++-.+..+... -..+- .--..-.++.|.|+|.+.++ .||.|+-++..+..
T Consensus 43 ~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~ 118 (236)
T 1tl2_A 43 FKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSD 118 (236)
T ss_dssp CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCST
T ss_pred ceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCC
Confidence 579999998875555 678877777655211 11110 00111468899999998888 56988877764422
Q ss_pred eEEEecCCccccc-cCcceeeeEEEEcCCCCEEEEEcCcceE
Q 023643 235 CIKVIDPVKDKQL-KGVISCVSCITLDASESWLVRVRATNYV 275 (279)
Q Consensus 235 ~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i 275 (279)
...-+.... .+ ..-=..+..+.|+|+|.+.+.. |+.+
T Consensus 119 ~~~Wl~~a~--~vg~~gw~~~~~lff~p~G~Lyav~--dg~l 156 (236)
T 1tl2_A 119 TDNWIARAT--EVGSGGWSGFKFLFFHPNGYLYAVH--GQQF 156 (236)
T ss_dssp TCCHHHHSE--EEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred CCceecccc--EeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence 111110000 00 1111356899999999987777 6655
No 309
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.16 E-value=0.062 Score=42.65 Aligned_cols=194 Identities=11% Similarity=0.124 Sum_probs=114.1
Q ss_pred CCceeeeccccccccceeeeeec----ccceEEEEECCCCCCCCCEEEEec-------CCCcEEEEeCCCCCcccccccC
Q 023643 2 CGDSTNWDEDAYRKSILKEREIL----TRTVFRTVWGPSKDGSPDTIVIAS-------SDGSITSYSIPSCISKLPLGLS 70 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~l~~~~-------~dg~i~iw~~~~~~~~~~~~~~ 70 (279)
+..|.-|++++.. ...+.+.-| ...|..-..++ +.++++..+ -.|.+.+|..+.
T Consensus 124 ~taVyHWsi~~~s-~P~kvFdR~~~L~~~QIInY~~d~----~~kW~~l~GI~~~~~~v~G~mQLYS~er---------- 188 (494)
T 1bpo_A 124 DNAVYHWSMEGES-QPVKMFDRHSSLAGCQIINYRTDA----KQKWLLLTGISAQQNRVVGAMQLYSVDR---------- 188 (494)
T ss_dssp SSEEEEEESSSSC-CCEEEEECCGGGTTCEEEEEEECT----TSSEEEEEEEEEETTEEEEEEEEEESTT----------
T ss_pred CCeeEEecccCCC-CchhheecchhcccceEEEEEECC----CCCeEEEEeecccCCcccceEEEeeccc----------
Confidence 3457778876532 333333333 35677777788 788776533 247789999885
Q ss_pred CcccceeeeccccccccCCccCeEEEEecCCCCc-eEEEEeeCC---CcEEEeecCCCccCcceeeeccCcccceEEee-
Q 023643 71 NSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED-ALLLSCGDD---GRICGWRWKEFTESKVPINLQGNHVKPVLDLV- 145 (279)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~- 145 (279)
+..+.+.+|.+.-..+....+... .+|..+... +.+.|-++........ .+. +...++.
T Consensus 189 ----------~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~--~f~----kk~vdv~f 252 (494)
T 1bpo_A 189 ----------KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ--PFP----KKAVDVFF 252 (494)
T ss_dssp ----------CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCC--CCC----CEEEECCC
T ss_pred ----------cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCC--Ccc----ceeeeeeC
Confidence 344566777765544444322211 244444432 6788888753211111 000 0111111
Q ss_pred cCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeE
Q 023643 146 NHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTA 225 (279)
Q Consensus 146 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i 225 (279)
.++... .--.++..++....++..+.-|.|++||+.++.++..-+-....|..-+.+....-++.....|.|
T Consensus 253 ppe~~~--------DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 253 PPEAQN--------DFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324 (494)
T ss_dssp CTTSTT--------CCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred Cccccc--------CceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceE
Confidence 111111 123578889988899999999999999999999998877667777666665554445555566666
Q ss_pred EEEeCCCCc
Q 023643 226 RIWDCKSGK 234 (279)
Q Consensus 226 ~vwd~~~~~ 234 (279)
.--.+....
T Consensus 325 l~v~v~e~~ 333 (494)
T 1bpo_A 325 LSVCVEEEN 333 (494)
T ss_dssp EEEEECTTT
T ss_pred EEEEEcccc
Confidence 555444433
No 310
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.15 E-value=0.032 Score=44.05 Aligned_cols=138 Identities=13% Similarity=0.173 Sum_probs=80.1
Q ss_pred cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccc-ccc-CCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643 26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLP-LGL-SNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE 103 (279)
Q Consensus 26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 103 (279)
..|..+..+| +|++||..+.. .|.|-.+..+..... ... .+.. .......+. ......+|..+.|+|-+.
T Consensus 66 ~~i~qlvlSp----sG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q-~~ty~l~~~--~~~~~s~I~qVlWHPl~~ 137 (452)
T 3pbp_A 66 DDTFHVISST----SGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQ-IFHYSIDEE--EVGPKSSIKKVLFHPKSY 137 (452)
T ss_dssp CTTCEEEECT----TSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTE-EEEEEGGGC--C--CCCCEEEEEECTTBG
T ss_pred CceeEEEECC----CCCEEEEecCC-eEEEEEecCccccCcccccccccc-eeEEEcCCc--ccCCCCceeEEEeccccC
Confidence 3678899999 99999998654 799998884311110 000 0000 000001111 011357899999999654
Q ss_pred -ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec--CC
Q 023643 104 -DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA--GD 180 (279)
Q Consensus 104 -~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d 180 (279)
+..|++-..|+.|++||+...... .. .+... ... +........|.+++|.+++-.|++.+ ..
T Consensus 138 ~ds~LVVLtsD~~Ir~yDl~~s~~~-P~-~L~k~--~~~-----------fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~ 202 (452)
T 3pbp_A 138 RDSCIVVLKEDDTITMFDILNSQEK-PI-VLNKP--NNS-----------FGLDARVNDITDLEFSKDGLTLYCLNTTEG 202 (452)
T ss_dssp GGCEEEEEETTSCEEEEETTCTTSC-CE-EESCC--CSE-----------EESCSSCCCEEEEEECTTSSCEEEEECTTS
T ss_pred CCCeEEEEecCCEEEEEEcccCCCC-Cc-chhcc--ccc-----------cCCCcccceEEEEEEcCCCcEEEEEecCCC
Confidence 138999999999999999752111 11 22210 000 11111223588999999888787754 77
Q ss_pred CeEEEE
Q 023643 181 SCAYCW 186 (279)
Q Consensus 181 ~~i~i~ 186 (279)
|-|+-.
T Consensus 203 GDIYAl 208 (452)
T 3pbp_A 203 GDIFAF 208 (452)
T ss_dssp CEEEEE
T ss_pred CCEEEE
Confidence 888754
No 311
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.97 E-value=0.085 Score=40.97 Aligned_cols=59 Identities=5% Similarity=-0.046 Sum_probs=37.9
Q ss_pred ceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce------EEEecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643 203 YLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC------IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR 270 (279)
Q Consensus 203 ~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 270 (279)
....++| .+|..+++.-..+.|...++..... ...+ ......+..+++.|||.++++..
T Consensus 269 ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~--------~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 269 PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETA--------LSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEE--------EESSCCEEEEEECTTSCEEEEEC
T ss_pred CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchhee--------cccCCCeeEEEECCCCcEEEEEe
Confidence 4567777 4677777777777788777654321 1111 11124678999999998777764
No 312
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.93 E-value=0.15 Score=43.10 Aligned_cols=165 Identities=12% Similarity=0.073 Sum_probs=94.3
Q ss_pred cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccC------CccCeEEEEec
Q 023643 26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHG------HDGPAYDVKFY 99 (279)
Q Consensus 26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~~~~~ 99 (279)
..+.+++|.+. ++.++.+=...+.|+.++++... ....+.. ....+..|++.
T Consensus 340 ~~~~~ld~d~~---~~~iy~sD~~~~~I~r~~~~g~~-------------------~~~v~~~~~~~~~~~~~p~glAvD 397 (628)
T 4a0p_A 340 RNVRAIDYDPL---DKQLYWIDSRQNMIRKAQEDGSQ-------------------GFTVVVSSVPSQNLEIQPYDLSID 397 (628)
T ss_dssp SCEEEEEEETT---TTEEEEEETTTTEEEEEETTSCS-------------------CEEEEC--------CCCEEEEEEE
T ss_pred CCceEEEEecC---CCeEEEEecCcceEEEEEcCCCC-------------------ceEEEEcccccccccCCcceEEee
Confidence 45788999882 44445554566788888776421 1111111 23357889988
Q ss_pred CCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec-
Q 023643 100 GGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA- 178 (279)
Q Consensus 100 ~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~- 178 (279)
..+. ++.++-+..+.|.+.+++.. ....+... .. ...+.|+++|...+|+...
T Consensus 398 ~~~~-nLY~td~~~~~I~v~~~~G~----~~~~l~~~-----------~l----------~~Pr~iavdp~~g~ly~tD~ 451 (628)
T 4a0p_A 398 IYSR-YIYWTCEATNVINVTRLDGR----SVGVVLKG-----------EQ----------DRPRAVVVNPEKGYMYFTNL 451 (628)
T ss_dssp TTTT-EEEEEETTTTEEEEEETTSC----EEEEEEEC-----------TT----------CCEEEEEEETTTTEEEEEEE
T ss_pred ccCC-eEEEEcCCCCEEEEEECCCC----eEEEEEeC-----------CC----------CceeeEEEecCCCeEEEeec
Confidence 8765 35567777888888887421 11111000 00 0247999999545444432
Q ss_pred CCC--eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEE-EecCCCeEEEEeCCCCceEEEe
Q 023643 179 GDS--CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIV-TGSEDGTARIWDCKSGKCIKVI 239 (279)
Q Consensus 179 ~d~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d~~i~vwd~~~~~~~~~~ 239 (279)
... .|...+++...........-.....+++++..+.|. +=+..+.|...++. |.....+
T Consensus 452 g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~d-G~~r~~~ 514 (628)
T 4a0p_A 452 QERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLS-GANRIVL 514 (628)
T ss_dssp ETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEE
T ss_pred CCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCC-CCceEEE
Confidence 222 577777653333222333345678999999755554 44557889999985 4444444
No 313
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.87 E-value=0.17 Score=45.92 Aligned_cols=105 Identities=6% Similarity=0.052 Sum_probs=60.7
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEE-EeecCCcceEEEEEcCCCcEEEEecCCCeEEEEe--CCCCceEEE
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKM-VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWD--CKSGKCIKV 238 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd--~~~~~~~~~ 238 (279)
+++++-- +| +|++|- ..+|++|++...+.++ ....+ ..+..+.....+++++.|..-..|.++. ...++....
T Consensus 888 v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~-~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~ 963 (1158)
T 3ei3_A 888 VYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNHY-NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEI 963 (1158)
T ss_dssp EEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEEC-CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEE
T ss_pred CEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeecc-ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEE
Confidence 5565532 34 455444 4789999998665444 11112 1233333333478888888777776654 333433333
Q ss_pred ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
-+ .....+++++.|-.+ ..++.+..+|.+.+.
T Consensus 964 a~-------D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl 995 (1158)
T 3ei3_A 964 AR-------DFNPNWMSAVEILDD-DNFLGAENAFNLFVC 995 (1158)
T ss_dssp EE-------CCSCBCEEEEEEEET-TEEEEEETTSEEEEE
T ss_pred Ee-------ecccccEEEEEEEcc-CcEEEEcCCCcEEEE
Confidence 22 234567888888644 467778888888764
No 314
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.76 E-value=0.11 Score=39.16 Aligned_cols=65 Identities=12% Similarity=0.115 Sum_probs=37.7
Q ss_pred CCCeEEEecCC-----CeEEEEecCCCcEEEE--eecCCcceEEEEEcCCCcEEEEecCCC-----eEEEEeCCCCceE
Q 023643 170 QGGAIFSAAGD-----SCAYCWDVESSRIKMV--FKGHSDYLHCIVARNSTNQIVTGSEDG-----TARIWDCKSGKCI 236 (279)
Q Consensus 170 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d~-----~i~vwd~~~~~~~ 236 (279)
++.+++.|+.+ ..+.+||+.+.+-... +.........+. .+++.++.|+.++ .+.+||+.+.+-.
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 45666666653 4688999987643322 211111112222 2577788887654 4899999877543
No 315
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.74 E-value=0.13 Score=39.52 Aligned_cols=106 Identities=8% Similarity=0.018 Sum_probs=63.2
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEec--CCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEe
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDV--ESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 239 (279)
+..+.+.|++.+++++...+..+-.|- .+.+.+. ......+..+++.+++..++. +.+|.+++.+...++.-..+
T Consensus 165 ~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~ 241 (327)
T 2xbg_A 165 MRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGEL 241 (327)
T ss_dssp EEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCC
T ss_pred eEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEec
Confidence 578899998887776655444444553 3344442 234567889999998876654 45788777642324333222
Q ss_pred cCCccccccCcceeeeEEEEcCCCCEEEEEcCcceE
Q 023643 240 DPVKDKQLKGVISCVSCITLDASESWLVRVRATNYV 275 (279)
Q Consensus 240 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 275 (279)
.... ......+..+++.+++..++++. +|.+
T Consensus 242 ~~~~----~~~~~~~~~v~~~~~~~~~~~g~-~g~i 272 (327)
T 2xbg_A 242 LSPL----RRNSVGFLDLAYRTPNEVWLAGG-AGAL 272 (327)
T ss_dssp BCTT----SSCCSCEEEEEESSSSCEEEEES-TTCE
T ss_pred cCCc----ccCCcceEEEEecCCCEEEEEeC-CCeE
Confidence 1110 01223578889998888777765 4544
No 316
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.72 E-value=0.33 Score=44.11 Aligned_cols=80 Identities=18% Similarity=0.075 Sum_probs=47.5
Q ss_pred ccceEEEEECCCC--CCCCCEEEEecC-CCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCC
Q 023643 25 TRTVFRTVWGPSK--DGSPDTIVIASS-DGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGG 101 (279)
Q Consensus 25 ~~~v~~~~~~~~~--~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 101 (279)
..+|.|+++.|.. ...++++|+|.. |++|+|+++.+.+.... ..+.. .....++.+..-
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~-----------------~~L~~-~~~p~si~l~~~ 614 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHK-----------------EMLGG-EIIPRSILMTTF 614 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEE-----------------EECCS-SCCEEEEEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEE-----------------EECCC-CCCCcEEEEEEe
Confidence 5689999998731 123578999996 99999999986321110 01111 112333333221
Q ss_pred CCceEEEEeeCCCcEEEeecC
Q 023643 102 NEDALLLSCGDDGRICGWRWK 122 (279)
Q Consensus 102 ~~~~~l~s~~~dg~i~iw~~~ 122 (279)
+...+|..|-.||.+.-+.++
T Consensus 615 ~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 615 ESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp TTEEEEEEEETTSEEEEEEEC
T ss_pred CCCcEEEEEeCCCeEEEEEEc
Confidence 222478888889988766654
No 317
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.66 E-value=0.1 Score=37.36 Aligned_cols=154 Identities=10% Similarity=0.013 Sum_probs=78.5
Q ss_pred cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccccccc--CCccCeEEEEecCCCC
Q 023643 26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLH--GHDGPAYDVKFYGGNE 103 (279)
Q Consensus 26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~ 103 (279)
..+..++|+| ++.+.++ .+|.+.-.+..++....-+. . ...+- +-.. -.++.|.|++.
T Consensus 41 ~~~~~laf~P----~G~LYaV--~~G~Ly~~~~~t~~~~~W~~------------s-~t~IG~~Gw~~-F~a~~fD~~G~ 100 (236)
T 1tl2_A 41 SNFKFLFLSP----GGELYGV--LNDKIYKGTPPTHDNDNWMG------------R-AKKIGNGGWNQ-FQFLFFDPNGY 100 (236)
T ss_dssp TTCSEEEECT----TSCEEEE--ETTEEEEESCCCSTTCCHHH------------H-CEEEECSCGGG-CSEEEECTTSC
T ss_pred ccceeEEECC----CccEEEE--eCCeEEEECCCCCCcccccc------------c-ccEeccccccc-ceEEEECCCCC
Confidence 4677999999 8998777 77776665654422111100 0 00010 1111 36788999996
Q ss_pred ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeE
Q 023643 104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCA 183 (279)
Q Consensus 104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 183 (279)
+.++ .||.|+-++..+......... ... + ...-| ..+..|.+.|+|.+.++. |+.+
T Consensus 101 --LYav--~dG~iyr~~pP~~~~~~Wl~~--a~~------v----g~~gw------~~~~~lff~p~G~Lyav~--dg~l 156 (236)
T 1tl2_A 101 --LYAV--SKDKLYKASPPQSDTDNWIAR--ATE------V----GSGGW------SGFKFLFFHPNGYLYAVH--GQQF 156 (236)
T ss_dssp --EEEE--ETTEEEEESCCCSTTCCHHHH--SEE------E----ECSSG------GGEEEEEECTTSCEEEEE--TTEE
T ss_pred --EEEe--CCCEEEEeCCCcCCCCceecc--ccE------e----ccCCC------CceEEEEECCCceEEEEe--CCcE
Confidence 4444 569888777432111111000 000 0 00000 025789999999876666 7776
Q ss_pred EEEecCCCc------EEEEee-cCCcceEEEEEcCCCcEEEEecCCCeE
Q 023643 184 YCWDVESSR------IKMVFK-GHSDYLHCIVARNSTNQIVTGSEDGTA 225 (279)
Q Consensus 184 ~i~d~~~~~------~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i 225 (279)
+-....++. ....+- ..-..-+.+.|.+++...++. ++.+
T Consensus 157 yr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 157 YKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp EEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred EecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 544333211 011111 222233446677777766655 6633
No 318
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.65 E-value=0.19 Score=40.50 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=23.5
Q ss_pred ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCC
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPS 60 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 60 (279)
-..-+.|+|.| +++++++-...+.|++++..+
T Consensus 26 l~~P~~~a~~p----dG~l~V~e~~gg~I~~~~~~~ 57 (454)
T 1cru_A 26 LNKPHALLWGP----DNQIWLTERATGKILRVNPES 57 (454)
T ss_dssp CSSEEEEEECT----TSCEEEEETTTCEEEEECTTT
T ss_pred CCCceEEEEcC----CCcEEEEEcCCCEEEEEECCC
Confidence 34567999999 898777765545788887653
No 319
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.64 E-value=0.14 Score=38.96 Aligned_cols=189 Identities=15% Similarity=0.195 Sum_probs=101.2
Q ss_pred CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccc
Q 023643 3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEP 82 (279)
Q Consensus 3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (279)
.++.++|++.+.+ ++.... .+.|.-=.|-. .+.|+..+. ..|.-|++... ..|
T Consensus 87 ~~LQiFnletK~k--lks~~~-~e~VvfWkWis-----~~~L~lVT~-taVyHWs~~~~------------------s~P 139 (365)
T 2xzh_A 87 KTLQIFNIEMKSK--MKAHTM-TDDVTFWKWIS-----LNTVALVTD-NAVYHWSMEGE------------------SQP 139 (365)
T ss_dssp TEEEEEETTTTEE--EEEEEC-SSCEEEEEECS-----SSEEEEEES-SEEEEEESSTT------------------CCC
T ss_pred CeEEEechHHhhh--hcceec-CCccEEEEecC-----CCeEEEEcC-CcEEEEcccCC------------------CCC
Confidence 3566777766543 444432 35666666654 344444433 35777877642 233
Q ss_pred cccccCC----ccCeEEEEecCCCCceEEEEee-------CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCC
Q 023643 83 DGFLHGH----DGPAYDVKFYGGNEDALLLSCG-------DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKG 151 (279)
Q Consensus 83 ~~~~~~h----~~~v~~~~~~~~~~~~~l~s~~-------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (279)
.+.+..| ...|.....+++.+ .++..+ -.|.+.+|..+. .....+.+ |...+..+...+...
T Consensus 140 ~kvFdR~~~L~~~QIInY~~d~~~k--W~~l~GI~~~~~~v~G~mQLYS~er----~~sQ~ieG-haa~F~~~~~~g~~~ 212 (365)
T 2xzh_A 140 VKMFDRHSSLAGCQIINYRTDAKQK--WLLLTGISAQQNRVVGAMQLYSVDR----KVSQPIEG-HAASFAQFKMEGNAE 212 (365)
T ss_dssp EEEEECCGGGTTCEEEEEEECTTSC--EEEEEEEEEETTEEEEEEEEEETTT----TEEEEECC-SEEEEEEECCTTCSS
T ss_pred ceeeecchhcccceEEEEEECCCCC--EEEEEeEeccCCccceeEEEEeecc----cccceeee-eeeeeEEEecCCCCC
Confidence 3333333 23466667777776 544333 246788888653 22333333 333333332222211
Q ss_pred ccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCC---c------EEEEeec---CCcceEEEEEcCCCcEEEEe
Q 023643 152 PWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS---R------IKMVFKG---HSDYLHCIVARNSTNQIVTG 219 (279)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~------~~~~~~~---~~~~i~~i~~~~~~~~l~~~ 219 (279)
+. .+.|++.. ....+.+++.++... . .+..+-. ..+-..+|..++.-..+..-
T Consensus 213 ~~-------~lf~fa~r--------~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyvi 277 (365)
T 2xzh_A 213 ES-------TLFCFAVR--------GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 277 (365)
T ss_dssp CE-------EEEEEEEE--------ETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred Cc-------eEEEEEEe--------cCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEE
Confidence 10 01122211 111257888887432 1 1111111 23456678888877788888
Q ss_pred cCCCeEEEEeCCCCceEEEec
Q 023643 220 SEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 220 ~~d~~i~vwd~~~~~~~~~~~ 240 (279)
+.-|.|++||+.++.++..-+
T Consensus 278 TK~G~ihlyDleTgt~i~~nr 298 (365)
T 2xzh_A 278 TKYGYIHLYDLETGTCIYMNR 298 (365)
T ss_dssp ETTSEEEEEETTTCCEEEEEE
T ss_pred eCCcEEEEEEcccCcEEEEec
Confidence 899999999999999988763
No 320
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.61 E-value=0.16 Score=39.18 Aligned_cols=61 Identities=15% Similarity=0.092 Sum_probs=38.8
Q ss_pred cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCC
Q 023643 24 LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGG 101 (279)
Q Consensus 24 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 101 (279)
.-..-+.|+|.| ++.++++--..|.|++++...+.... + ...-..+....+....|+++|+
T Consensus 30 gL~~P~~ia~~p----dG~llVter~~G~I~~v~~~~g~~~~------------v-~~~~~v~~~g~~GllGia~~Pd 90 (347)
T 3das_A 30 GLNSPWGLAPLP----GGDLLVSSRDEATITRVDAKTGRKTE------------L-GEVPGVSPSGEGGLLGIALSPD 90 (347)
T ss_dssp CCSSEEEEEECT----TSCEEEEETTTCEEEEECTTTCCEEE------------E-EECTTCCCBTTBSEEEEEECTT
T ss_pred CCCCceEEEEcC----CCcEEEEEecCCEEEEEECCCCcEee------------e-cccCceeecCCCCceeeEeccc
Confidence 345678999999 89988877668999998865432100 0 0000112234566899999995
No 321
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.60 E-value=0.063 Score=41.70 Aligned_cols=100 Identities=11% Similarity=0.006 Sum_probs=59.3
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcE--EEEee---cCCcceEEEEEcCC---CcE-EEEecCC-----CeEEE
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRI--KMVFK---GHSDYLHCIVARNS---TNQ-IVTGSED-----GTARI 227 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~---~~~~~i~~i~~~~~---~~~-l~~~~~d-----~~i~v 227 (279)
...++|.|++++++ +...+.|++++ .++. +..+. ........|+++|+ +.. +++-... +.|..
T Consensus 33 P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 33 PWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp EEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred ceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 37899999998554 55669999998 3432 22221 12456789999998 444 4443332 67888
Q ss_pred EeCCCCce-----E-EEecCCccccccCcceeeeEEEEcCCCCEEEEE
Q 023643 228 WDCKSGKC-----I-KVIDPVKDKQLKGVISCVSCITLDASESWLVRV 269 (279)
Q Consensus 228 wd~~~~~~-----~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 269 (279)
|+...++. + ..+.... -..|. ...++|.|+|.++++.
T Consensus 110 ~~~~~~~~~~~~~l~~~~p~~~---~~~h~--~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 110 LRHLGERGVLDRVVLDGIPARP---HGLHS--GGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEECSSCEEEEEEEEEEECCCT---TCCCC--CCCEEECTTSCEEEEC
T ss_pred EEeCCCCcCceEEEEEeCCCCC---CCCcC--CceEEECCCCCEEEEE
Confidence 88764321 1 1121000 01232 3689999999766664
No 322
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.59 E-value=0.15 Score=38.40 Aligned_cols=65 Identities=11% Similarity=0.077 Sum_probs=37.8
Q ss_pred CCCeEEEecCC-----CeEEEEecCCCcEEEE--eecCCcceEEEEEcCCCcEEEEecCC-----CeEEEEeCCCCceE
Q 023643 170 QGGAIFSAAGD-----SCAYCWDVESSRIKMV--FKGHSDYLHCIVARNSTNQIVTGSED-----GTARIWDCKSGKCI 236 (279)
Q Consensus 170 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~ 236 (279)
++..++.|+.+ ..+.+||+.+.+-... +........++.+ +++.++.|+.+ ..+.+||+.+.+..
T Consensus 206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 45566666653 4689999987654332 2111111222222 57777888765 45788998876543
No 323
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.56 E-value=0.18 Score=39.11 Aligned_cols=29 Identities=7% Similarity=0.229 Sum_probs=22.3
Q ss_pred cceEEEEECCCCCCCCC-EEEEecCCCcEEEEeCC
Q 023643 26 RTVFRTVWGPSKDGSPD-TIVIASSDGSITSYSIP 59 (279)
Q Consensus 26 ~~v~~~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~ 59 (279)
..-+.|+|.| +++ ++++ ...|.|++++..
T Consensus 18 ~~P~~i~~~p----dG~~l~V~-e~~G~i~~~~~~ 47 (353)
T 2g8s_A 18 DHPWALAFLP----DNHGMLIT-LRGGELRHWQAG 47 (353)
T ss_dssp SSEEEEEECS----TTCCEEEE-ETTTEEEEEETT
T ss_pred CCcEEEEEcC----CCCEEEEE-eCCceEEEEeCC
Confidence 4568999999 888 5554 567999998854
No 324
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.56 E-value=0.16 Score=38.56 Aligned_cols=66 Identities=11% Similarity=0.175 Sum_probs=36.5
Q ss_pred CCCeEEEecC------CCeEEEEecCCCcEEEE--eecCCcceEEEEEcCCCcEEEEecCC-----CeEEEEeCCCCceE
Q 023643 170 QGGAIFSAAG------DSCAYCWDVESSRIKMV--FKGHSDYLHCIVARNSTNQIVTGSED-----GTARIWDCKSGKCI 236 (279)
Q Consensus 170 ~~~~l~~~~~------d~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~ 236 (279)
++..++.|+. -..+.+||+.+.+-... +........++.+ +++.++.|+.+ ..+.+||+.+.+..
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 235 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWE 235 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence 4555566653 24589999987643322 2111111122222 56777777643 34778998877644
Q ss_pred E
Q 023643 237 K 237 (279)
Q Consensus 237 ~ 237 (279)
.
T Consensus 236 ~ 236 (318)
T 2woz_A 236 V 236 (318)
T ss_dssp E
T ss_pred E
Confidence 3
No 325
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.53 E-value=0.12 Score=39.94 Aligned_cols=102 Identities=11% Similarity=-0.035 Sum_probs=62.4
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEE--EEe----ecCCcceEEEEEcCC----CcEEEEe--cCCCeEEEEe
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIK--MVF----KGHSDYLHCIVARNS----TNQIVTG--SEDGTARIWD 229 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~----~~~~~~i~~i~~~~~----~~~l~~~--~~d~~i~vwd 229 (279)
...|+|.|++.++++--..|.|++++...++.. ..+ .........|+++|+ +.+.++- ..++.|.-|.
T Consensus 34 P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~ 113 (347)
T 3das_A 34 PWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRML 113 (347)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEE
T ss_pred ceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEE
Confidence 478999999987776665899999987655432 222 123567899999995 4444432 2345566565
Q ss_pred CCCC----------ceE-EEecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643 230 CKSG----------KCI-KVIDPVKDKQLKGVISCVSCITLDASESWLVRVR 270 (279)
Q Consensus 230 ~~~~----------~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 270 (279)
+..+ +.+ ..+.. . ..| .-..++|.|||.++++.+
T Consensus 114 ~~~~~~~~~~~~~~~~i~~~~p~-~----~~H--~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 114 YDEKKPSGEQLGAPDTVFRGIPK-G----VIH--NGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp BCTTSCTTCCBCCCEEEEEEECC-C----SSC--CCCCEEECTTSCEEEECB
T ss_pred eCCCCcccccCCCcEEEEEcCCC-C----CCc--cCccccCCCCCCEEEEEC
Confidence 5431 111 11211 0 233 346789999998777654
No 326
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.40 E-value=0.23 Score=38.52 Aligned_cols=62 Identities=6% Similarity=-0.070 Sum_probs=41.4
Q ss_pred cceEEEEEc-------CCCcEEEEecCCCeEEEEeCCCC-ceE--EEecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643 202 DYLHCIVAR-------NSTNQIVTGSEDGTARIWDCKSG-KCI--KVIDPVKDKQLKGVISCVSCITLDASESWLVRVR 270 (279)
Q Consensus 202 ~~i~~i~~~-------~~~~~l~~~~~d~~i~vwd~~~~-~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 270 (279)
.....++|. .+|.++++.-..+.|...++... +.. ..+. .+....+..+++.|||.++++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-------~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-------KNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-------TTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-------cCCCCCeeEEEECCCCcEEEEEe
Confidence 356778883 46777877777888888888753 222 1221 22234678999999998777764
No 327
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.38 E-value=0.089 Score=42.45 Aligned_cols=103 Identities=9% Similarity=0.069 Sum_probs=60.7
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEE--EEeec------CCcceEEEEEcCC----CcEEEEecC--------
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIK--MVFKG------HSDYLHCIVARNS----TNQIVTGSE-------- 221 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~------~~~~i~~i~~~~~----~~~l~~~~~-------- 221 (279)
...|+|.|+++++++-...+.|++++..+++.. ..+.. ....+..|+|+|+ +.+.++-+.
T Consensus 29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~ 108 (454)
T 1cru_A 29 PHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDK 108 (454)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--C
T ss_pred ceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCcc
Confidence 479999999987776554457998887655432 22221 2456789999995 444444332
Q ss_pred ----CCeEEEEeCCCC--c-----eEE-EecCCccccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643 222 ----DGTARIWDCKSG--K-----CIK-VIDPVKDKQLKGVISCVSCITLDASESWLVRVRA 271 (279)
Q Consensus 222 ----d~~i~vwd~~~~--~-----~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 271 (279)
...|.-|++..+ + .+. .+.. . ..| ....|+|.|||.++++.+.
T Consensus 109 ~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~----~~H--~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 109 ELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-S----KDH--QSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-C----SSC--CEEEEEECTTSCEEEEECC
T ss_pred ccccccEEEEEEECCCCCCcCCcEEEEEcCCC-C----CCC--CCCeEeECCCCeEEEEECC
Confidence 234555554322 1 111 1211 0 123 4688999999987776543
No 328
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.35 E-value=0.51 Score=43.55 Aligned_cols=188 Identities=15% Similarity=0.191 Sum_probs=100.7
Q ss_pred CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccc
Q 023643 3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEP 82 (279)
Q Consensus 3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (279)
.++.|+|++.... ++.... ..+|.-=.|-. .+.|+..+. ..|.-|++... ..|
T Consensus 86 ~~lQiFnl~~k~k--lks~~~-~e~VvfWkWis-----~~~l~lVT~-~aVyHW~~~~~------------------s~P 138 (1630)
T 1xi4_A 86 KTLQIFNIEMKSK--MKAHTM-TDDVTFWKWIS-----LNTVALVTD-NAVYHWSMEGE------------------SQP 138 (1630)
T ss_pred CeEEEeehHHhhh--hccccc-CCCceEEEecC-----CCeeEEEcC-CeEEEeccCCC------------------Ccc
Confidence 4677888777643 444432 34566666654 344555443 36889998642 344
Q ss_pred cccccCC----ccCeEEEEecCCCCceEEEEee-------CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCC
Q 023643 83 DGFLHGH----DGPAYDVKFYGGNEDALLLSCG-------DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKG 151 (279)
Q Consensus 83 ~~~~~~h----~~~v~~~~~~~~~~~~~l~s~~-------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (279)
...+..| ...|....-+++.+ .++..| -.|.+.+|..+.. ....+.| |...+..+..++...
T Consensus 139 ~k~fdR~~~L~~~QIinY~~d~~~k--W~~l~gi~~~~~~v~G~mQLyS~er~----~sQ~ieg-ha~~F~~~~~~~~~~ 211 (1630)
T 1xi4_A 139 VKMFDRHSSLAGCQIINYRTDAKQK--WLLLTGISAQQNRVVGAMQLYSVDRK----VSQPIEG-HAASFAQFKMEGNAE 211 (1630)
T ss_pred HHHHhcchhcccCeeEEeeeCCCCC--eEEEEeeccCCCcccceeeeeecccc----cchhhhH-hHhhhheeccCCCCC
Confidence 4444444 34566666777776 544322 3578888887532 1122222 222222221111111
Q ss_pred ccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCC---cE------EEEeec---CCcceEEEEEcCCCcEEEEe
Q 023643 152 PWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS---RI------KMVFKG---HSDYLHCIVARNSTNQIVTG 219 (279)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~------~~~~~~---~~~~i~~i~~~~~~~~l~~~ 219 (279)
+ ..+.|.+.... ..+.++|-++... .+ +..+-. ...-..+|..++.-..+..-
T Consensus 212 ~-------~~l~~f~~~~~--------~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~i 276 (1630)
T 1xi4_A 212 E-------STLFCFAVRGQ--------AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (1630)
T ss_pred C-------ceEEEEEEecC--------CCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEE
Confidence 0 01223322210 1267888887432 11 111111 12344567777777777788
Q ss_pred cCCCeEEEEeCCCCceEEEe
Q 023643 220 SEDGTARIWDCKSGKCIKVI 239 (279)
Q Consensus 220 ~~d~~i~vwd~~~~~~~~~~ 239 (279)
+.-|.|.+||+.++.++..-
T Consensus 277 tk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 277 TKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred ecCceEEEEecccchhhhhc
Confidence 89999999999999887654
No 329
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.0069 Score=46.56 Aligned_cols=64 Identities=19% Similarity=0.286 Sum_probs=41.2
Q ss_pred CCCeEEEecCCCeEEEEecCCCcEEEEeecCCc--c-----eEEEEEc-----CCCcEEEEecCCCeEEEEeCCCCc
Q 023643 170 QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSD--Y-----LHCIVAR-----NSTNQIVTGSEDGTARIWDCKSGK 234 (279)
Q Consensus 170 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~-----i~~i~~~-----~~~~~l~~~~~d~~i~vwd~~~~~ 234 (279)
.+..+++|+.++.+.-.|+++|+.+.++..... . ..|.... ..+..++.+..+..+.+.+ ++|+
T Consensus 110 ~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~ 185 (339)
T 2be1_A 110 EDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA 185 (339)
T ss_dssp CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEEEEEEEECEECC-TTSC
T ss_pred cCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC
Confidence 355789999999999999999999998864321 0 1111110 1245677777777777776 4554
No 330
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.21 E-value=0.35 Score=38.55 Aligned_cols=189 Identities=15% Similarity=0.204 Sum_probs=103.3
Q ss_pred CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccc
Q 023643 3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEP 82 (279)
Q Consensus 3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (279)
.++.|+|++.+.+ ++.+.. .+.|.-=.|-. .+.|+..+. ..|.-|++... ..|
T Consensus 86 ~~lQiFnle~K~k--lks~~~-~e~VvfWkWis-----~~~l~lVT~-taVyHWsi~~~------------------s~P 138 (494)
T 1bpo_A 86 KTLQIFNIEMKSK--MKAHTM-TDDVTFWKWIS-----LNTVALVTD-NAVYHWSMEGE------------------SQP 138 (494)
T ss_dssp TEEEEEETTTTEE--EEEEEC-SSCCCEEEEEE-----TTEEEEECS-SEEEEEESSSS------------------CCC
T ss_pred CeEEEEchHHhhh--hcceec-CCCceEEEecC-----CCeEEEEcC-CeeEEecccCC------------------CCc
Confidence 3567777766543 444432 34555556654 345555443 36788887642 233
Q ss_pred cccccCC----ccCeEEEEecCCCCceEEEEee-------CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCC
Q 023643 83 DGFLHGH----DGPAYDVKFYGGNEDALLLSCG-------DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKG 151 (279)
Q Consensus 83 ~~~~~~h----~~~v~~~~~~~~~~~~~l~s~~-------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (279)
.+.+..| ...|.....+++.+ .++..| -.|.+.+|..+. .....+.+ |...+..+...+...
T Consensus 139 ~kvFdR~~~L~~~QIInY~~d~~~k--W~~l~GI~~~~~~v~G~mQLYS~er----~~sQ~ieG-haa~F~~~~~~g~~~ 211 (494)
T 1bpo_A 139 VKMFDRHSSLAGCQIINYRTDAKQK--WLLLTGISAQQNRVVGAMQLYSVDR----KVSQPIEG-HAASFAQFKMEGNAE 211 (494)
T ss_dssp EEEEECCGGGTTCEEEEEEECTTSS--EEEEEEEEEETTEEEEEEEEEESTT----CCEEEECC-SEEEEEEEECTTCSS
T ss_pred hhheecchhcccceEEEEEECCCCC--eEEEEeecccCCcccceEEEeeccc----cccchhee-eeeeeEEEecCCCCC
Confidence 3333333 23466677777777 554332 247788888653 22333333 333333333222211
Q ss_pred ccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCC--------c-EEEEee---cCCcceEEEEEcCCCcEEEEe
Q 023643 152 PWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS--------R-IKMVFK---GHSDYLHCIVARNSTNQIVTG 219 (279)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--------~-~~~~~~---~~~~~i~~i~~~~~~~~l~~~ 219 (279)
+. .+.|++.... ..+.+++.++... + .+..+- ...+-..+|..++.-..+..-
T Consensus 212 ~~-------~lf~fa~r~~--------~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyvi 276 (494)
T 1bpo_A 212 ES-------TLFCFAVRGQ--------AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (494)
T ss_dssp EE-------EEEEEEECST--------TCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEE
T ss_pred Cc-------eEEEEEEecC--------CCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEE
Confidence 10 1222222211 1368888888532 1 111111 123456788888887788888
Q ss_pred cCCCeEEEEeCCCCceEEEec
Q 023643 220 SEDGTARIWDCKSGKCIKVID 240 (279)
Q Consensus 220 ~~d~~i~vwd~~~~~~~~~~~ 240 (279)
..-|.|.+||+.++.++..-+
T Consensus 277 TK~G~i~lyDleTgt~i~~nr 297 (494)
T 1bpo_A 277 TKYGYIHLYDLETGTCIYMNR 297 (494)
T ss_dssp ETTSEEEEEETTTCCEEEEEE
T ss_pred ecCceEEEEecccceeeeeec
Confidence 899999999999999988763
No 331
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.17 E-value=0.18 Score=46.26 Aligned_cols=194 Identities=11% Similarity=0.094 Sum_probs=102.9
Q ss_pred CCceeeeccccccccceeeeeec----ccceEEEEECCCCCCCCCEEEEec-------CCCcEEEEeCCCCCcccccccC
Q 023643 2 CGDSTNWDEDAYRKSILKEREIL----TRTVFRTVWGPSKDGSPDTIVIAS-------SDGSITSYSIPSCISKLPLGLS 70 (279)
Q Consensus 2 dG~v~iw~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~l~~~~-------~dg~i~iw~~~~~~~~~~~~~~ 70 (279)
+..|.-|++.+.. ...+.+.-| ...|..-.-++ +.++++..+ -.|.+.+|.++..
T Consensus 124 ~~aVyHW~~~~~s-~P~k~fdR~~~L~~~QIinY~~d~----~~kW~~l~gi~~~~~~v~G~mQLyS~er~--------- 189 (1630)
T 1xi4_A 124 DNAVYHWSMEGES-QPVKMFDRHSSLAGCQIINYRTDA----KQKWLLLTGISAQQNRVVGAMQLYSVDRK--------- 189 (1630)
T ss_pred CCeEEEeccCCCC-ccHHHHhcchhcccCeeEEeeeCC----CCCeEEEEeeccCCCcccceeeeeecccc---------
Confidence 3457788886532 223333323 45677777777 778776533 4578899998853
Q ss_pred CcccceeeeccccccccCCccCeEEEEecCCCCc-eEEEEeeC---CCcEEEeecCCCccCcceeeeccCcccceEEeec
Q 023643 71 NSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED-ALLLSCGD---DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVN 146 (279)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (279)
..+.+.||.+.-..+........ ..+..+.. .+.+.|-++.....+.. .+.. +.+--++.
T Consensus 190 -----------~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~--~f~k---k~~~~~~~ 253 (1630)
T 1xi4_A 190 -----------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ--PFPK---KAVDVFFP 253 (1630)
T ss_pred -----------cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCC--CCcc---ccccccCC
Confidence 33455566554433333211110 13332222 26788888754211111 0100 00000111
Q ss_pred CCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEE
Q 023643 147 HQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTAR 226 (279)
Q Consensus 147 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~ 226 (279)
+... ..-..++..++....++..+.-|.|++||+.++.++..-+-...+|...+.+....-++.....|.|.
T Consensus 254 ~~~~--------~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl 325 (1630)
T 1xi4_A 254 PEAQ--------NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 325 (1630)
T ss_pred cccc--------cCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEE
Confidence 1111 11135778888888888999999999999999988876655555555555444333333334555554
Q ss_pred EEeCCCC
Q 023643 227 IWDCKSG 233 (279)
Q Consensus 227 vwd~~~~ 233 (279)
--.+...
T Consensus 326 ~v~v~~~ 332 (1630)
T 1xi4_A 326 SVCVEEE 332 (1630)
T ss_pred EEEEccc
Confidence 4444433
No 332
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.07 E-value=0.31 Score=36.80 Aligned_cols=65 Identities=18% Similarity=0.181 Sum_probs=37.3
Q ss_pred CCCeEEEecCC-----CeEEEEecCCCcEEEE--eecCCcceEEEEEcCCCcEEEEecCC-----CeEEEEeCCCCceE
Q 023643 170 QGGAIFSAAGD-----SCAYCWDVESSRIKMV--FKGHSDYLHCIVARNSTNQIVTGSED-----GTARIWDCKSGKCI 236 (279)
Q Consensus 170 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~ 236 (279)
++.+++.|+.+ ..+.+||+.+.+-... +.........+.+ +++.++.|+.+ ..+.+||+.+.+..
T Consensus 215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 45666666553 5689999987643322 2111111122222 56777887754 45788888876544
No 333
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.94 E-value=0.42 Score=37.12 Aligned_cols=29 Identities=10% Similarity=-0.035 Sum_probs=21.6
Q ss_pred ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeC
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSI 58 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~ 58 (279)
-..-..++|.| +++++++ ..+|.|++++.
T Consensus 28 l~~P~~ia~~p----dG~l~V~-e~~g~I~~~d~ 56 (354)
T 3a9g_A 28 LEVPWSIAPLG----GGRYLVT-ERPGRLVLISP 56 (354)
T ss_dssp CSCEEEEEEEE----TTEEEEE-ETTTEEEEECS
T ss_pred CCCCeEEEEcC----CCeEEEE-eCCCEEEEEeC
Confidence 34568899999 8875555 55699998873
No 334
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.90 E-value=0.72 Score=39.51 Aligned_cols=72 Identities=14% Similarity=0.097 Sum_probs=40.9
Q ss_pred eEEEcCC-CCeEEEecC--C-----CeEEEEecCCCcE-----EEEeec----CCcceEEEEEcCCCcEEEEecC-----
Q 023643 164 AIAVDPQ-GGAIFSAAG--D-----SCAYCWDVESSRI-----KMVFKG----HSDYLHCIVARNSTNQIVTGSE----- 221 (279)
Q Consensus 164 ~~~~~~~-~~~l~~~~~--d-----~~i~i~d~~~~~~-----~~~~~~----~~~~i~~i~~~~~~~~l~~~~~----- 221 (279)
++.+..+ +..++.|+. + ..+.+||+.+.+- -..+.. ..... +++...+++.++.|+.
T Consensus 543 a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~ 621 (695)
T 2zwa_A 543 GLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGL 621 (695)
T ss_dssp EEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCC
T ss_pred EEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCC
Confidence 3555655 556666654 2 4688999987661 111111 11111 2223333677788874
Q ss_pred ---CCeEEEEeCCCCceE
Q 023643 222 ---DGTARIWDCKSGKCI 236 (279)
Q Consensus 222 ---d~~i~vwd~~~~~~~ 236 (279)
...+.+||+.+.+..
T Consensus 622 ~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 622 FDRTNSIISLDPLSETLT 639 (695)
T ss_dssp CCTTTSEEEEETTTTEEE
T ss_pred CCCCCeEEEEECCCCeEE
Confidence 345999999887655
No 335
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.67 E-value=0.47 Score=35.71 Aligned_cols=65 Identities=12% Similarity=0.179 Sum_probs=37.9
Q ss_pred CCCeEEEecCC-----CeEEEEecCCCcEEEE--eecCCcceEEEEEcCCCcEEEEecCC-----CeEEEEeCCCCceE
Q 023643 170 QGGAIFSAAGD-----SCAYCWDVESSRIKMV--FKGHSDYLHCIVARNSTNQIVTGSED-----GTARIWDCKSGKCI 236 (279)
Q Consensus 170 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~ 236 (279)
++.+++.|+.+ ..+.+||+.+.+-... +........++.+ +++.++.|+.+ ..+.+||+.+.+-.
T Consensus 200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 200 KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 45566666543 4588999987643322 2211122223333 57788888754 56889999886543
No 336
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.66 E-value=0.14 Score=39.81 Aligned_cols=106 Identities=9% Similarity=0.046 Sum_probs=58.0
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEe-------ecCCcceEEEEEcCC----CcEEEEecC-------CC
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVF-------KGHSDYLHCIVARNS----TNQIVTGSE-------DG 223 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-------~~~~~~i~~i~~~~~----~~~l~~~~~-------d~ 223 (279)
...|+|.|+++.|+++...|.|++++.. +.....+ .........|+++|+ +...++-+. ..
T Consensus 20 P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 20 PWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp EEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred cEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 4789999999844455567999999854 3321111 112346789999995 444444332 23
Q ss_pred eEEEEeCCCC--c--eEEE-ecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643 224 TARIWDCKSG--K--CIKV-IDPVKDKQLKGVISCVSCITLDASESWLVRVR 270 (279)
Q Consensus 224 ~i~vwd~~~~--~--~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 270 (279)
.|..|++... + .... +.......-..| .-..++|.|||.++++.+
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h--~~~~l~~~pdG~Lyv~~G 148 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNH--FGGRLVFDGKGYLFIALG 148 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSC--CCCCEEECSSSEEEEEEC
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCcc--cCccEEECCCCcEEEEEC
Confidence 5666666432 1 1111 111000000123 235799999997666643
No 337
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.47 E-value=0.49 Score=36.56 Aligned_cols=57 Identities=9% Similarity=-0.001 Sum_probs=30.2
Q ss_pred eEEEEecCCCc--EEEEeecCCcceEEEEEcCCCcEEEEecCCC------eEEEEeCCCCceEEEec
Q 023643 182 CAYCWDVESSR--IKMVFKGHSDYLHCIVARNSTNQIVTGSEDG------TARIWDCKSGKCIKVID 240 (279)
Q Consensus 182 ~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~~ 240 (279)
.+.+||+.+.+ .+..+......-.++ ..+++.++.|+.++ .|.++++++++.+....
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 57789987653 333333222222222 23577888888643 36667888877766543
No 338
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.41 E-value=0.5 Score=36.48 Aligned_cols=41 Identities=17% Similarity=-0.007 Sum_probs=19.0
Q ss_pred eEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643 224 TARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT 272 (279)
Q Consensus 224 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 272 (279)
.+.+||+.+.+....-..+ .....-.++. .++++++.|+.+
T Consensus 286 ~~~~yd~~~~~W~~~~~~p------~~r~~~~~~~--~~~~i~v~GG~~ 326 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELS------QGRAYGVSLP--WNNSLLIIGGET 326 (357)
T ss_dssp CCEEEECC---CEEEEECS------SCCBSSEEEE--ETTEEEEEEEEC
T ss_pred eEEEEecCCCceeeCCCCC------CCcccceeEE--eCCEEEEEeeeC
Confidence 5788998876544332111 1111112222 367778888754
No 339
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.97 E-value=0.069 Score=43.77 Aligned_cols=105 Identities=13% Similarity=0.108 Sum_probs=67.3
Q ss_pred ceeEEEcCCCCeEEEec-CCCeEEEEecCCC------cE-------EEEeecCCcceEEEEEcCCCcEEEEecCCCeEEE
Q 023643 162 NNAIAVDPQGGAIFSAA-GDSCAYCWDVESS------RI-------KMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARI 227 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~------~~-------~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~v 227 (279)
...+..+|||+++++++ .+.++.++|.+.. +. ..+.+ -.-.....+|.++|+-..+--.|..|.-
T Consensus 325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvk 403 (638)
T 3sbq_A 325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVK 403 (638)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEE
Confidence 46789999999887755 4788999998742 11 22333 2234578899999977788889999999
Q ss_pred EeCCCC----------ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643 228 WDCKSG----------KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR 270 (279)
Q Consensus 228 wd~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 270 (279)
|++... ..+.++..+-+ .+|.....+=.-.|+|++|++..
T Consensus 404 Wni~~a~~~~~g~~~~~v~~k~dv~Yq---pGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 404 WNMEEAVRAYKGEKVNYIKQKLDVHYQ---PGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEHHHHHHHHTTCCCCCEEEEEECSSC---EEEEEETTTTSTTCCSCEEEEEE
T ss_pred EeccHHHHHhcCccCCeeeeccccccC---CcccccCCCccCCCCccEEEEec
Confidence 998653 34555543321 23322111112356777777763
No 340
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.89 E-value=0.89 Score=34.38 Aligned_cols=67 Identities=13% Similarity=0.118 Sum_probs=38.1
Q ss_pred CCCeEEEecCCC-----eEEEEecCCCcEEEE--eecCCcceEEEEEcCCCcEEEEecCCC--------------eEEEE
Q 023643 170 QGGAIFSAAGDS-----CAYCWDVESSRIKMV--FKGHSDYLHCIVARNSTNQIVTGSEDG--------------TARIW 228 (279)
Q Consensus 170 ~~~~l~~~~~d~-----~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d~--------------~i~vw 228 (279)
+++.++.|+.++ .+.+||+.+.+-... +.........+.+ +++.++.|+.++ .+.+|
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~y 273 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRY 273 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEe
Confidence 456666666543 588999987643332 2111112222222 567777777542 37788
Q ss_pred eCCCCceEEE
Q 023643 229 DCKSGKCIKV 238 (279)
Q Consensus 229 d~~~~~~~~~ 238 (279)
|+.+.+-...
T Consensus 274 d~~~~~W~~~ 283 (315)
T 4asc_A 274 NEEEKKWEGV 283 (315)
T ss_dssp ETTTTEEEEE
T ss_pred cCCCChhhhh
Confidence 9888765554
No 341
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=94.56 E-value=0.67 Score=37.45 Aligned_cols=105 Identities=6% Similarity=0.006 Sum_probs=60.5
Q ss_pred ceeEEEcCCCC-eEEEecCCCeEEEEecCCC---cEEEEee---------cCCcceEEEEEcCC----CcEEEEecC--C
Q 023643 162 NNAIAVDPQGG-AIFSAAGDSCAYCWDVESS---RIKMVFK---------GHSDYLHCIVARNS----TNQIVTGSE--D 222 (279)
Q Consensus 162 i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---~~~~~~~---------~~~~~i~~i~~~~~----~~~l~~~~~--d 222 (279)
...|+|.|++. .|+++...|.|++++.... ..+..+. .....+..|+|+|+ +.+.++-+. +
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~ 95 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE 95 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence 37899999986 5666677899999975422 1222221 11456889999996 444444332 1
Q ss_pred ----------CeEEEEeCCCC----------ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643 223 ----------GTARIWDCKSG----------KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT 272 (279)
Q Consensus 223 ----------~~i~vwd~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 272 (279)
..|.-|.+..+ +.+..+... ...| .-..|+|.|||.+.++.+..
T Consensus 96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~----~~~H--~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAEL----HRKH--LGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEES----SSSS--CEEEEEECTTSCEEEEECCT
T ss_pred CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCC----CCcc--cCCcEeECCCCcEEEEeCCC
Confidence 13444555321 222222211 1234 35789999999877766543
No 342
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.37 E-value=1.2 Score=33.62 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=43.1
Q ss_pred eEEEcCCCCeEEEec----CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC-CCeEEEEeCCCCceEEE
Q 023643 164 AIAVDPQGGAIFSAA----GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE-DGTARIWDCKSGKCIKV 238 (279)
Q Consensus 164 ~~~~~~~~~~l~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~~i~vwd~~~~~~~~~ 238 (279)
+..|+++++.|+-.. ....|+..++.... ...+..+.. .+++|+++.|.-.+. ...|.+.++..+.....
T Consensus 108 ~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l 182 (302)
T 3s25_A 108 CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALF 182 (302)
T ss_dssp EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEE
T ss_pred ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEE
Confidence 336777888777654 45567777776433 333433322 456777777775554 67788888766554433
Q ss_pred e
Q 023643 239 I 239 (279)
Q Consensus 239 ~ 239 (279)
+
T Consensus 183 ~ 183 (302)
T 3s25_A 183 Y 183 (302)
T ss_dssp E
T ss_pred e
Confidence 3
No 343
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.59 E-value=1.8 Score=32.74 Aligned_cols=64 Identities=5% Similarity=0.019 Sum_probs=37.6
Q ss_pred EcCCCCeEEEec-CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC--CeEEEEeCCCCc
Q 023643 167 VDPQGGAIFSAA-GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED--GTARIWDCKSGK 234 (279)
Q Consensus 167 ~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--~~i~vwd~~~~~ 234 (279)
++|+++.|+-.+ ....|...++..+.....+.+ .. ...+.|++.+|+-.... ..|..-++..+.
T Consensus 152 ~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 152 CNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp SEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred eeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 456677666444 367888888876655444432 22 23456888877765433 356666665443
No 344
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=93.39 E-value=1.9 Score=32.55 Aligned_cols=67 Identities=6% Similarity=0.158 Sum_probs=37.3
Q ss_pred CCCeEEEecCC-----CeEEEEecCCCcEEEE--eecCCcceEEEEEcCCCcEEEEecCC--------------CeEEEE
Q 023643 170 QGGAIFSAAGD-----SCAYCWDVESSRIKMV--FKGHSDYLHCIVARNSTNQIVTGSED--------------GTARIW 228 (279)
Q Consensus 170 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d--------------~~i~vw 228 (279)
++..++.|+.+ ..+.+||+.+.+-... +.........+. .+++.++.|+.+ ..+.+|
T Consensus 206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~y 283 (318)
T 2woz_A 206 KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKY 283 (318)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEE
T ss_pred CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEE
Confidence 45566666532 3577899887643322 211111112222 256777777754 357888
Q ss_pred eCCCCceEEE
Q 023643 229 DCKSGKCIKV 238 (279)
Q Consensus 229 d~~~~~~~~~ 238 (279)
|+.+.+-...
T Consensus 284 d~~~~~W~~~ 293 (318)
T 2woz_A 284 EDDKKEWAGM 293 (318)
T ss_dssp ETTTTEEEEE
T ss_pred eCCCCEehhh
Confidence 9888766554
No 345
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=92.77 E-value=0.38 Score=37.04 Aligned_cols=68 Identities=12% Similarity=0.065 Sum_probs=47.0
Q ss_pred CeEEEecCCCeEEEEecCCCcEEEEeecC-CcceEEEEEc--C-CCcEEEEe-cCCCeEEEEeCCCCceEEEe
Q 023643 172 GAIFSAAGDSCAYCWDVESSRIKMVFKGH-SDYLHCIVAR--N-STNQIVTG-SEDGTARIWDCKSGKCIKVI 239 (279)
Q Consensus 172 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~--~-~~~~l~~~-~~d~~i~vwd~~~~~~~~~~ 239 (279)
..+++++.||.|+-+|..+|+.+.+++.. ..++....-. + ++..++.. +.||.|..++..+|.....+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~ 83 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL 83 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee
Confidence 47888999999999999999999998754 1233221110 1 22344443 68999999999888655444
No 346
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=92.42 E-value=4.9 Score=34.71 Aligned_cols=185 Identities=8% Similarity=0.060 Sum_probs=98.5
Q ss_pred cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643 26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA 105 (279)
Q Consensus 26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 105 (279)
..|.++.-.. ++ .|-.|+.+| +..||..+.... .........|.++.. .++
T Consensus 63 ~~i~~i~~d~----~g-~lWigT~~G-l~~yd~~~~~f~-------------------~~~~~~~~~i~~i~~-~~g--- 113 (758)
T 3ott_A 63 TRIYCGVIID----NT-YLYMGTDNG-ILVYNYRADRYE-------------------QPETDFPTDVRTMAL-QGD--- 113 (758)
T ss_dssp SCEEEEEEET----TT-EEEEEETTE-EEEEETTTTEEC-------------------CCSCCCCSCEEEEEE-ETT---
T ss_pred ceEEEEEEcC----CC-cEEEEeCCC-eEEEeCCCCEEE-------------------CcccCCCceEEEEEe-cCC---
Confidence 4588877666 44 555666665 778898763110 000011234666654 344
Q ss_pred EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEE
Q 023643 106 LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYC 185 (279)
Q Consensus 106 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 185 (279)
.|..++.+ -+..++..+.. ...+... .. ..+...|.++....++.+. +|+.. -+..
T Consensus 114 ~lWigt~~-Gl~~~~~~~~~----~~~~~~~-~~----------------~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~ 169 (758)
T 3ott_A 114 TLWLGALN-GLYTYQLQSRK----LTSFDTR-RN----------------GLPNNTIYSIIRTKDNQIY-VGTYN-GLCR 169 (758)
T ss_dssp EEEEEETT-EEEEEETTTCC----EEEECHH-HH----------------CCSCSCEEEEEECTTCCEE-EEETT-EEEE
T ss_pred cEEEEcCC-cceeEeCCCCe----EEEeccC-CC----------------CcCCCeEEEEEEcCCCCEE-EEeCC-CHhh
Confidence 45555555 57778864321 1111000 00 0001136777777776644 45554 4778
Q ss_pred EecCCCcEEEEe-ec----CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEc
Q 023643 186 WDVESSRIKMVF-KG----HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLD 260 (279)
Q Consensus 186 ~d~~~~~~~~~~-~~----~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 260 (279)
+|..+++..... .. ....|.++...+++..|..|+. +-|..+|..+++..... ......|.++..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~--------~l~~~~i~~i~~d 240 (758)
T 3ott_A 170 YIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTE--------AFHNNSIKSLALD 240 (758)
T ss_dssp EETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEE--------EEEEEEEEEEEEC
T ss_pred CccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEecc--------CCCCCeEEEEEEc
Confidence 887766543211 11 1234888888777665444553 45888898776543221 1123468888888
Q ss_pred CCCCEEEEEcCcc
Q 023643 261 ASESWLVRVRATN 273 (279)
Q Consensus 261 ~~~~~l~~~~~d~ 273 (279)
++|.+.+.. .+|
T Consensus 241 ~~g~lWigT-~~G 252 (758)
T 3ott_A 241 GNGDLLAGT-DNG 252 (758)
T ss_dssp TTCCEEEEE-TTE
T ss_pred CCCCEEEEe-CCc
Confidence 888766554 445
No 347
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.41 E-value=2.6 Score=31.45 Aligned_cols=64 Identities=9% Similarity=0.099 Sum_probs=31.0
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK 231 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~ 231 (279)
|..++.... ..+.-. ||.|+.|-....-.+..-..-...|..++.... ..++. .||.|..|=..
T Consensus 143 i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~-hs~al--~~G~v~~wG~n 206 (282)
T 3qhy_B 143 VTALDGGVY--TALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF-HSLAL--KDGKVIAWGDN 206 (282)
T ss_dssp EEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS-EEEEE--ETTEEEEEECC
T ss_pred eEEEEcccC--EEEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCC-EEEEE--ECCeEEEEECC
Confidence 455554432 222233 688888865432111111111245666665433 22333 48888888654
No 348
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.36 E-value=8.1 Score=35.33 Aligned_cols=37 Identities=5% Similarity=-0.088 Sum_probs=31.8
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEe
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVF 197 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 197 (279)
.+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 4556677788889999999999999999999988875
No 349
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=90.99 E-value=6.9 Score=33.52 Aligned_cols=66 Identities=17% Similarity=0.178 Sum_probs=40.8
Q ss_pred CCCCeEEEecCCC--eEEEEecCCCcEEEEe-----ecCCcceEEEEEcCC-CcEEEEecC--C-----CeEEEEeCCCC
Q 023643 169 PQGGAIFSAAGDS--CAYCWDVESSRIKMVF-----KGHSDYLHCIVARNS-TNQIVTGSE--D-----GTARIWDCKSG 233 (279)
Q Consensus 169 ~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~-----~~~~~~i~~i~~~~~-~~~l~~~~~--d-----~~i~vwd~~~~ 233 (279)
.++..++.|+.++ .+.+||+.+.+-...- ........++.+... ++.++.|+. + +.+.+||+.+.
T Consensus 499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 4677777776544 6899999876533321 111122233555554 677788875 2 45889999887
Q ss_pred c
Q 023643 234 K 234 (279)
Q Consensus 234 ~ 234 (279)
+
T Consensus 579 ~ 579 (695)
T 2zwa_A 579 N 579 (695)
T ss_dssp C
T ss_pred c
Confidence 7
No 350
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=90.00 E-value=8.8 Score=33.15 Aligned_cols=107 Identities=7% Similarity=0.050 Sum_probs=62.9
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
|.++...+++..|..|+. +-+..+|..+++...........|.++....+|.+.+.. .+ -+.+++..+++... +..
T Consensus 193 i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~~~~~~~~~~-~~~ 268 (758)
T 3ott_A 193 VNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DN-GLYVYHNDTTPLQH-IIH 268 (758)
T ss_dssp EEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TT-EEEEECCTTSCCEE-ECC
T ss_pred eEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CC-ceeEEecCCCcEEE-EEc
Confidence 678887777776666664 458889987765433211224568888887777765543 44 47888877665433 221
Q ss_pred CccccccCcceeeeEEEEcCCCCEEEEEcCcc
Q 023643 242 VKDKQLKGVISCVSCITLDASESWLVRVRATN 273 (279)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 273 (279)
.......-....|.++..+.+|.+.+.. ..|
T Consensus 269 ~~~~~~~l~~~~i~~i~~D~~g~lWiGT-~~G 299 (758)
T 3ott_A 269 DSRNIQSLTNNIIWNIFADQEHNIWLGT-DYG 299 (758)
T ss_dssp CTTCTTSCSCSCEEEEEECTTCCEEEEE-SSS
T ss_pred CCCCcCcCCcCeEEEEEEcCCCCEEEEe-CCc
Confidence 1100001123468888888887755543 335
No 351
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=89.29 E-value=4.6 Score=36.08 Aligned_cols=37 Identities=5% Similarity=-0.088 Sum_probs=32.7
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEe
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVF 197 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 197 (279)
.+.+++..++..++++.+.|+++|+|++.+++++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4677788888889999999999999999999988875
No 352
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=88.96 E-value=5.8 Score=32.94 Aligned_cols=117 Identities=12% Similarity=0.015 Sum_probs=66.8
Q ss_pred eEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCc--ceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC
Q 023643 93 AYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESK--VPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ 170 (279)
Q Consensus 93 v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 170 (279)
...+..+|+|+ ..++++-.+.++.+++++...... .+..+. ..+.. ...... .....+|+++
T Consensus 325 PHGv~vsPDGk-yi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~----~~~~a-e~e~Gl----------GPlHt~Fd~~ 388 (638)
T 3sbq_A 325 PHGCNTSSDGK-YFIAAGKLSPTCSMIAIDKLPDLFAGKLADPR----DVIVG-EPELGL----------GPLHTTFDGR 388 (638)
T ss_dssp CCCEEECTTSC-EEEEECTTSSBEEEEEGGGHHHHHTTCCSCGG----GGEEE-CCBCCS----------CEEEEEECSS
T ss_pred CcceeeCCCCC-EEEEcCCCCCeEEEEEeehhhhhhhccccCcc----cceEe-eccCCC----------cccEEEECCC
Confidence 45688899998 344555668999999986421100 000000 00000 000111 1367899999
Q ss_pred CCeEEEecCCCeEEEEecCCC----------cEEEEeecCCcceEEEE-----EcCCCcEEEEec---CCCeE
Q 023643 171 GGAIFSAAGDSCAYCWDVESS----------RIKMVFKGHSDYLHCIV-----ARNSTNQIVTGS---EDGTA 225 (279)
Q Consensus 171 ~~~l~~~~~d~~i~i~d~~~~----------~~~~~~~~~~~~i~~i~-----~~~~~~~l~~~~---~d~~i 225 (279)
|....+-.-|..|..|++... ..+..+.-|..+-.-.+ -.|+|++|++.. .|+.+
T Consensus 389 G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl 461 (638)
T 3sbq_A 389 GNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFL 461 (638)
T ss_dssp SEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSC
T ss_pred CceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCc
Confidence 966666778999999999753 35555555544322211 246788888864 45543
No 353
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=88.93 E-value=2.2 Score=38.00 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=34.0
Q ss_pred ceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 203 YLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 203 ~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
.+.+++..++..++++-+.|+++|+|++.+++++.+...
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 467778888888999999999999999999999888653
No 354
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=87.59 E-value=10 Score=30.71 Aligned_cols=30 Identities=10% Similarity=0.166 Sum_probs=22.9
Q ss_pred cceEEEEECCCCCCCCC-EEEEecCCCcEEEEeCC
Q 023643 26 RTVFRTVWGPSKDGSPD-TIVIASSDGSITSYSIP 59 (279)
Q Consensus 26 ~~v~~~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~ 59 (279)
..-+.|+|.| ++. .|+++...|.|++++..
T Consensus 14 ~~P~~~a~~p----dG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSG----DGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCS----SSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECC----CCCeEEEEEeCCceEEEEeCC
Confidence 4567899999 775 45556778999999754
No 355
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=85.98 E-value=4.6 Score=34.51 Aligned_cols=36 Identities=8% Similarity=0.101 Sum_probs=29.2
Q ss_pred CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee
Q 023643 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK 198 (279)
Q Consensus 161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 198 (279)
.|.++.+ +..++++-+.|.++|+||+.+++++.+..
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 3555554 46799999999999999999999887764
No 356
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.49 E-value=4.2 Score=37.14 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=32.2
Q ss_pred ceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 203 YLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 203 ~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
.+.+++..++..++++-+.|+++|||++.+++++.+...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 344556667788999999999999999999999888653
No 357
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=84.40 E-value=6.7 Score=32.79 Aligned_cols=59 Identities=10% Similarity=-0.001 Sum_probs=41.6
Q ss_pred eEEEEEcCCCcEEEEecCC------------CeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEE
Q 023643 204 LHCIVARNSTNQIVTGSED------------GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV 269 (279)
Q Consensus 204 i~~i~~~~~~~~l~~~~~d------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 269 (279)
.-.|+|+|.|++++.-..+ +.+.+.+..+++....+.. .....++.++|+||++.|+..
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~-------P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-------PIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC-------CTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC-------CCCccCcCeeECCCCCEEEEE
Confidence 4678999999876654322 3466667777776665532 234689999999999988765
No 358
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=82.23 E-value=14 Score=30.81 Aligned_cols=60 Identities=8% Similarity=-0.026 Sum_probs=41.5
Q ss_pred ceEEEEEcCCCcEEEEecC------------CCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEE
Q 023643 203 YLHCIVARNSTNQIVTGSE------------DGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV 269 (279)
Q Consensus 203 ~i~~i~~~~~~~~l~~~~~------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 269 (279)
....|.|+++|.+.+.... ...+..++..+++....+.. .....++.++|+||++.|+.+
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~-------P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-------PIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC-------CTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC-------CCCccccCCEECCCCCEEEEE
Confidence 4567999999987773221 22577777777776655521 123568999999999988876
No 359
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=79.85 E-value=21 Score=29.82 Aligned_cols=60 Identities=15% Similarity=0.251 Sum_probs=43.4
Q ss_pred CCceeEEEcCCCCeEEEecC------------CCeEEEEecCCCcEEEEeecC-CcceEEEEEcCCCcEEEEe
Q 023643 160 PENNAIAVDPQGGAIFSAAG------------DSCAYCWDVESSRIKMVFKGH-SDYLHCIVARNSTNQIVTG 219 (279)
Q Consensus 160 ~~i~~~~~~~~~~~l~~~~~------------d~~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~ 219 (279)
.....|.|+++|.+.+.... ...+..++..+++..+.+... ...++.++|+||++.|+.+
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 44678999999986663221 226778888888877766543 3568999999999887765
No 360
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=79.63 E-value=14 Score=31.00 Aligned_cols=58 Identities=17% Similarity=0.278 Sum_probs=42.1
Q ss_pred ceeEEEcCCCCeEEEecCC------------CeEEEEecCCCcEEEEeecC-CcceEEEEEcCCCcEEEEe
Q 023643 162 NNAIAVDPQGGAIFSAAGD------------SCAYCWDVESSRIKMVFKGH-SDYLHCIVARNSTNQIVTG 219 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d------------~~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~ 219 (279)
.-.|+|+|.|.+++.-..+ ..+.+.+..+++..+-+.++ ...++.++|+||++.|+..
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 3568999999866654322 34667777788877766654 3678999999999887765
No 361
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=79.01 E-value=4.2 Score=34.78 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=30.7
Q ss_pred ceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643 203 YLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 203 ~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 241 (279)
.|.++.+ +..++++-+.|.++|+|++++++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555554 478999999999999999999999888765
No 362
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=77.69 E-value=19 Score=26.69 Aligned_cols=65 Identities=11% Similarity=0.112 Sum_probs=33.8
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS 232 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~ 232 (279)
|..++..... .++. .||.|+.|-....-.+..-......|..|+.......+++ ||.|..|=...
T Consensus 182 v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~---~g~v~~wG~n~ 246 (282)
T 3qhy_B 182 VDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK---NGKVIAWGSSR 246 (282)
T ss_dssp EEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE---TTEEEEESTTC
T ss_pred eEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE---CCEEEEecCCC
Confidence 5566554332 2333 5899999975432111111111234666665443333333 99999996544
No 363
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=72.61 E-value=29 Score=26.27 Aligned_cols=203 Identities=11% Similarity=0.090 Sum_probs=101.7
Q ss_pred CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEe
Q 023643 40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGW 119 (279)
Q Consensus 40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 119 (279)
+...+++.+.+|.|+--.+..-..... ... +.....++.. +.+..+....... .++..+..|.++-.
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~------~~~----g~~~~~lke~-D~l~~~~~~~~~~--~ll~~T~~G~~~~~ 73 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGT------GGK----GLSSFDLNDG-DEIVIALCVNTHD--YLFMISNEGKLYLI 73 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCS------SCC----CEECCCCCTT-CCEEEEEEEETTC--EEEEEETTSEEEEE
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhcccc------CCC----CceecccCCC-CEEEEEEEECCCC--EEEEEECCCeEEEE
Confidence 567888999999999877654211000 000 0111122322 3454554444444 77778888988777
Q ss_pred ecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC---CCCeEEEecCCCeEEEEecCCC-----
Q 023643 120 RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP---QGGAIFSAAGDSCAYCWDVESS----- 191 (279)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~----- 191 (279)
...+.+... ..-.+.+......+ .....|..+...+ +..+++..+..|.++...+..-
T Consensus 74 ~~~~ip~~~--r~~~G~~i~~~l~l------------~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~ 139 (312)
T 1suu_A 74 NAYEIKDSS--RASKGQNISELINL------------GDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKS 139 (312)
T ss_dssp EGGGSCC---------CBGGGTSCC------------CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC---
T ss_pred EHHHCCCCC--ccCCCcChhhccCC------------CCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCC
Confidence 654322111 01111111111001 1111233333222 3567888899999998887432
Q ss_pred --cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC-------ceEEEecCCccccccCcceeeeEEEEcCC
Q 023643 192 --RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG-------KCIKVIDPVKDKQLKGVISCVSCITLDAS 262 (279)
Q Consensus 192 --~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 262 (279)
.....+.. .+.+..+........++..+.+|.+..+....- +-+..+.. .. ...|.++..-.+
T Consensus 140 ~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L------~~-~d~vv~~~~v~~ 211 (312)
T 1suu_A 140 RGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKL------KE-GDLFVKVLSVKE 211 (312)
T ss_dssp -CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCC------CT-TCCEEEEEECTT
T ss_pred CcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEe------CC-CCEEEEEEEECC
Confidence 22222333 345555555444567888888999888876431 11222211 22 234555544445
Q ss_pred CCEEEEEcCcceEEe
Q 023643 263 ESWLVRVRATNYVIL 277 (279)
Q Consensus 263 ~~~l~~~~~d~~i~~ 277 (279)
+..|++.+..|....
T Consensus 212 ~~~l~~vt~~G~~kr 226 (312)
T 1suu_A 212 NPYLLIVSENGYGKR 226 (312)
T ss_dssp CSEEEEEETTSEEEE
T ss_pred CCeEEEEECCCceEE
Confidence 566777777776543
No 364
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=72.08 E-value=31 Score=26.37 Aligned_cols=99 Identities=8% Similarity=0.122 Sum_probs=58.8
Q ss_pred CCCeEEEecCCCeEEEEecCCCc-------EEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC--CCc------
Q 023643 170 QGGAIFSAAGDSCAYCWDVESSR-------IKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK--SGK------ 234 (279)
Q Consensus 170 ~~~~l~~~~~d~~i~i~d~~~~~-------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~--~~~------ 234 (279)
+..+++..+.+|.|+.-.+.... ....++. ...+..+........|+..+..|.+..+... .-.
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a 186 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRAT 186 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTS
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCC
Confidence 46789999999999998875422 1122333 3344444444455677778888988777665 211
Q ss_pred -eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEE
Q 023643 235 -CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVI 276 (279)
Q Consensus 235 -~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 276 (279)
-+..+. +. ....|.++...+++.+|+..+..|.++
T Consensus 187 ~Gv~~i~------L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~K 222 (327)
T 3uc1_A 187 SGVQGMR------FN-IDDRLLSLNVVREGTYLLVATSGGYAK 222 (327)
T ss_dssp BCEESSC------CC-TTCCEEEEEECCTTCEEEEEETTSEEE
T ss_pred CCeeeec------CC-CCCEEEEEEEECCCCEEEEEeCCCcEE
Confidence 111111 11 234466666555666788888888765
No 365
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=68.29 E-value=41 Score=26.35 Aligned_cols=90 Identities=14% Similarity=0.127 Sum_probs=58.2
Q ss_pred CeEEEEecCCC--cEEEEeecC------CcceEEEEEc---CC----CcE-EEEecCCCeEEEEeCCCCceEEEecCCcc
Q 023643 181 SCAYCWDVESS--RIKMVFKGH------SDYLHCIVAR---NS----TNQ-IVTGSEDGTARIWDCKSGKCIKVIDPVKD 244 (279)
Q Consensus 181 ~~i~i~d~~~~--~~~~~~~~~------~~~i~~i~~~---~~----~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 244 (279)
-.|.+||+.+. +.++.+.-. ...+..+++. |. +.+ .++=+..+-|.|+|+.+++..+.......
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 36889999998 888877532 3467788887 22 233 44444577899999999988776632110
Q ss_pred c------cccCc----ceeeeEEEEcCC----CCEEEEEc
Q 023643 245 K------QLKGV----ISCVSCITLDAS----ESWLVRVR 270 (279)
Q Consensus 245 ~------~~~~~----~~~v~~~~~~~~----~~~l~~~~ 270 (279)
. .+.+. ...+..|+++|+ ++.|.-..
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~p 242 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLA 242 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEE
Confidence 0 11121 237889999997 66666543
No 366
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=66.56 E-value=44 Score=26.00 Aligned_cols=66 Identities=15% Similarity=0.129 Sum_probs=33.8
Q ss_pred ceeEEEcC-CCCeEEEecCCC----eEEEEecCCCc---EEEE---eec--------CCcceEEEEEcC-C-CcEEEEec
Q 023643 162 NNAIAVDP-QGGAIFSAAGDS----CAYCWDVESSR---IKMV---FKG--------HSDYLHCIVARN-S-TNQIVTGS 220 (279)
Q Consensus 162 i~~~~~~~-~~~~l~~~~~d~----~i~i~d~~~~~---~~~~---~~~--------~~~~i~~i~~~~-~-~~~l~~~~ 220 (279)
|.+|+++| +...+++++..+ .|...+ +.++ .+.. +.. ....|.++++.| + ...|..+.
T Consensus 57 v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~ 135 (394)
T 3b7f_A 57 IHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGT 135 (394)
T ss_dssp EEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEE
T ss_pred eEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEe
Confidence 78999998 334555555444 444332 2222 2211 111 112577899987 2 45555555
Q ss_pred CCCeEEEE
Q 023643 221 EDGTARIW 228 (279)
Q Consensus 221 ~d~~i~vw 228 (279)
..+.|...
T Consensus 136 ~~ggl~~S 143 (394)
T 3b7f_A 136 SPQGLFRS 143 (394)
T ss_dssp ETTEEEEE
T ss_pred cCCcEEEE
Confidence 55655544
No 367
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=50.82 E-value=77 Score=23.84 Aligned_cols=202 Identities=12% Similarity=0.115 Sum_probs=95.1
Q ss_pred CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEe
Q 023643 40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGW 119 (279)
Q Consensus 40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 119 (279)
+...+++.+.+|.|+--.+..-..... ... +.....++.. +.+..+....... .|+..+..|.+.-+
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~------~~~----g~~~~~~ke~-D~l~~~~~~~~~~--~ll~fT~~G~~~~~ 68 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRR------GGK----GKSAARIKEE-DFIDRLLVANTHD--HILCFSSRGRVYSM 68 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC-------------------------------CCEEEEEEEETTC--EEEEEETTSEEEEE
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhcc------CCC----CceeeeeCCC-CEEEEEEEECCCC--EEEEEECCCEEEEE
Confidence 556788899999998777654210000 000 0001112222 3344444444444 67777778887666
Q ss_pred ecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEE-c--CCCCeEEEecCCCeEEEEecCCC-----
Q 023643 120 RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAV-D--PQGGAIFSAAGDSCAYCWDVESS----- 191 (279)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~--~~~~~l~~~~~d~~i~i~d~~~~----- 191 (279)
...+.+.... .-.+.+...+.. +.....|..+.. . .++.+++..+..|.++.-.+..-
T Consensus 69 ~~~elp~~~~--~a~G~~i~~~l~------------l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r 134 (307)
T 1zi0_A 69 KVYQLPEATR--GARGRPIVNLLP------------LEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRT 134 (307)
T ss_dssp EGGGSCCCCS--SSCCEEGGGTSC------------CCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCT
T ss_pred EhhHCcCCCC--CCCCeEhhhccC------------CCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhcccc
Confidence 5433221110 001111000000 111112444432 2 24557888999999999876421
Q ss_pred --cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC-------ceEEEecCCccccccCcceeeeEEEEcCC
Q 023643 192 --RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG-------KCIKVIDPVKDKQLKGVISCVSCITLDAS 262 (279)
Q Consensus 192 --~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 262 (279)
.....++.+ +.+..+........++..+.+|.+..++...- +-...+.. . ....|.++...++
T Consensus 135 ~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L------~-~~d~Vv~~~~~~~ 206 (307)
T 1zi0_A 135 AGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL------G-EGDKVVSLIVPRG 206 (307)
T ss_dssp TCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC------C-TTCCEEEEECCCS
T ss_pred CCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEe------C-CCCEEEEEEEecC
Confidence 111223333 44555444444556777778888777765321 11111211 1 2234555554455
Q ss_pred CCEEEEEcCcceEE
Q 023643 263 ESWLVRVRATNYVI 276 (279)
Q Consensus 263 ~~~l~~~~~d~~i~ 276 (279)
+..|++.+..|..+
T Consensus 207 ~~~ll~~T~~G~~K 220 (307)
T 1zi0_A 207 DGAILTATQNGYGK 220 (307)
T ss_dssp SCEEEEEETTSEEE
T ss_pred CCEEEEEEcCCceE
Confidence 56677777777654
No 368
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=49.91 E-value=83 Score=23.97 Aligned_cols=120 Identities=11% Similarity=0.125 Sum_probs=68.1
Q ss_pred ccCeEEEEecC---CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEE
Q 023643 90 DGPAYDVKFYG---GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIA 166 (279)
Q Consensus 90 ~~~v~~~~~~~---~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 166 (279)
...|..+...+ +.. +++.++.+|.++.-.+........ . .+..+.... ...+..+.
T Consensus 94 ~e~i~~~~~~~~~~~e~--~~v~~T~~G~iKr~~l~~~~~~~r----~-----G~~~i~lke----------~D~lv~~~ 152 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAP--YLVLATRNGLVKKSKLTDFDSNRS----G-----GIVAVNLRD----------NDELVGAV 152 (327)
T ss_dssp TCCEEEEEEESSTTSSS--EEEEEETTSEEEEEEGGGGCCCCS----S-----CEESCBCCT----------TCCEEEEE
T ss_pred CCEEEEEEEeccCCCCC--EEEEEcCCCEEEEeEHHHhhcccc----C-----ceEEEEECC----------CCEEEEEE
Confidence 34455554433 344 899999999999988765432211 0 000000000 01133343
Q ss_pred EcCCCCeEEEecCCCeEEEEecC--CCc---------EEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC
Q 023643 167 VDPQGGAIFSAAGDSCAYCWDVE--SSR---------IKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK 231 (279)
Q Consensus 167 ~~~~~~~l~~~~~d~~i~i~d~~--~~~---------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~ 231 (279)
.......++..+..|.+..+... .-. ..-.+. ....|.++...+.+.+++..+..|.++.-.+.
T Consensus 153 ~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~ 227 (327)
T 3uc1_A 153 LCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIE 227 (327)
T ss_dssp EECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred EecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHH
Confidence 44445577778888988888765 211 111122 23456666665666788889999998877653
No 369
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=49.49 E-value=44 Score=27.68 Aligned_cols=66 Identities=8% Similarity=-0.041 Sum_probs=42.6
Q ss_pred ceeEEEcCCC--CeEEEecCCCeEEEEecCCC----cEEEEeec--CCcceE-EEEEcCCCcEEEEecCCCeEEE
Q 023643 162 NNAIAVDPQG--GAIFSAAGDSCAYCWDVESS----RIKMVFKG--HSDYLH-CIVARNSTNQIVTGSEDGTARI 227 (279)
Q Consensus 162 i~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~----~~~~~~~~--~~~~i~-~i~~~~~~~~l~~~~~d~~i~v 227 (279)
.++|+....+ ..++.|+.+|.|+-..+... ..+.++.- ...+|. .|.+++++.+|..++..+.++|
T Consensus 402 lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 402 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred eEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 4555554433 35778899998865555322 12333332 245775 8999999999999988877665
No 370
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=48.81 E-value=79 Score=23.36 Aligned_cols=162 Identities=12% Similarity=0.043 Sum_probs=87.9
Q ss_pred ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecC--CC
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYG--GN 102 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~ 102 (279)
.+.+..+.-.. ..+.|+.-++.|.++--.+..-. ... ...+ +. ....|..+.. + +.
T Consensus 23 gD~~~~~~~~~----t~~~ll~fT~~G~v~~~~~~~lp---------~~~-----~~~l--l~-~~e~i~~v~~-~~~~~ 80 (276)
T 3no0_A 23 KAPVVNILRVP----FTEGLFLVSNRGRVYWIAGSQAL---------QGS-----KVSL--KS-REEKIVGAFI-REKFG 80 (276)
T ss_dssp CCCEEEEEEEE----TTSCEEEEETTSEEEEECSHHHH---------TSE-----ECCC--SS-TTCCEEEEEE-GGGSC
T ss_pred CCeEEEEEEEC----CCCEEEEEcCCCeEEEEEhhhCc---------cCc-----cccc--CC-CCCEEEEEEC-CcCCC
Confidence 34566665555 45566666788876644332100 000 1111 32 3445666543 3 34
Q ss_pred CceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCe
Q 023643 103 EDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSC 182 (279)
Q Consensus 103 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 182 (279)
. +++..+.+|.++...+.+.. ... . .+..+... ....+..+........++..+..|.
T Consensus 81 ~--~~v~~T~~G~iKr~~l~~~~-~~~----~-----G~~~i~lk----------egD~l~~~~~~~~~~~ill~T~~G~ 138 (276)
T 3no0_A 81 N--RLLLATKKGYVKKIPLAEFE-YKA----Q-----GMPIIKLT----------EGDEVVSIASSVDETHILLFTKKGR 138 (276)
T ss_dssp S--EEEEEETTSEEEEEEGGGTT-TCS----T-----TEECSCCC----------TTCCEEEEEECCSSCEEEEEETTSE
T ss_pred C--EEEEEeCCCEEEEEEHHHhh-hhc----C-----CeEEEecC----------CCCEEEEEEEeCCCCEEEEEECCCE
Confidence 4 89999999999999876542 100 0 00000000 0012344444445567888888999
Q ss_pred EEEEecCC---------CcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC
Q 023643 183 AYCWDVES---------SRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK 231 (279)
Q Consensus 183 i~i~d~~~---------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~ 231 (279)
++.+.... |.....+. ....|..+...+++..++..+..|.++...+.
T Consensus 139 ~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~ 195 (276)
T 3no0_A 139 VARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPYLLVITAKGRVKKISHE 195 (276)
T ss_dssp EEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSEEEEEETTSCEEEEEGG
T ss_pred EEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHH
Confidence 88887542 11111233 23456666555556788888899998887753
No 371
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=48.16 E-value=59 Score=26.55 Aligned_cols=66 Identities=15% Similarity=0.149 Sum_probs=42.2
Q ss_pred ceeEEEcCC----CC--eEEEecCCCeEEEEecC-CC-------cEEEEeec--CCcceEEEEEcCCCcEEEEecCCCeE
Q 023643 162 NNAIAVDPQ----GG--AIFSAAGDSCAYCWDVE-SS-------RIKMVFKG--HSDYLHCIVARNSTNQIVTGSEDGTA 225 (279)
Q Consensus 162 i~~~~~~~~----~~--~l~~~~~d~~i~i~d~~-~~-------~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d~~i 225 (279)
.++|+...- +. .++.|+.+|.|+-.-+. .+ ..+.++.. ...+|..|.++++..+|..++.++.+
T Consensus 406 lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~ 485 (495)
T 1q47_A 406 FTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVA 485 (495)
T ss_dssp EEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEE
T ss_pred eEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEE
Confidence 466665432 33 57778999987543332 21 12223332 35789999999999999999988877
Q ss_pred EE
Q 023643 226 RI 227 (279)
Q Consensus 226 ~v 227 (279)
+|
T Consensus 486 ~v 487 (495)
T 1q47_A 486 QL 487 (495)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 372
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=47.42 E-value=83 Score=26.04 Aligned_cols=69 Identities=7% Similarity=0.051 Sum_probs=42.1
Q ss_pred ceEEEEEcCC--CcEEEEecCCCeEEEEeCCCC----ceEEEecCCccccccCcceeee-EEEEcCCCCEEEEEcCcceE
Q 023643 203 YLHCIVARNS--TNQIVTGSEDGTARIWDCKSG----KCIKVIDPVKDKQLKGVISCVS-CITLDASESWLVRVRATNYV 275 (279)
Q Consensus 203 ~i~~i~~~~~--~~~l~~~~~d~~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i 275 (279)
.+++|+.... -..+..|..+|.|.=..+... .....+.. .....+|. .|.++++..+|+.++..+.+
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v------~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~ 474 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSV------FKDGSPILRDMAFSINQLYLYVMSERQVT 474 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEEC------CTTCCCCCSCCEECTTSSEEEEECSSEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEe------ecCCCccccceEEccCCCeEEEEeccccc
Confidence 3555655543 345777888998754444322 12222221 12235675 89999999999999988876
Q ss_pred Ee
Q 023643 276 IL 277 (279)
Q Consensus 276 ~~ 277 (279)
+|
T Consensus 475 kv 476 (539)
T 3al9_A 475 RV 476 (539)
T ss_dssp EE
T ss_pred ee
Confidence 64
No 373
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=47.17 E-value=80 Score=23.01 Aligned_cols=69 Identities=4% Similarity=0.165 Sum_probs=42.6
Q ss_pred ceeEEEcCCCCeEEEecCCCeEEEEecCC-------CcEEEEeecCCcceEEEEEc-CCCcEEEEecCCCeEEEEeCC
Q 023643 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVES-------SRIKMVFKGHSDYLHCIVAR-NSTNQIVTGSEDGTARIWDCK 231 (279)
Q Consensus 162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------~~~~~~~~~~~~~i~~i~~~-~~~~~l~~~~~d~~i~vwd~~ 231 (279)
|.++....++.+++.++..|.++...+.. +.....++. .+.+..+... .....++..+.+|.+..++..
T Consensus 86 Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ 162 (256)
T 1zvt_A 86 VDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFPVS 162 (256)
T ss_dssp EEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEEGG
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEEEEHH
Confidence 55553323456788889999999988743 223333332 2344444444 245577788889988888764
No 374
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=47.03 E-value=1.2e+02 Score=24.85 Aligned_cols=69 Identities=13% Similarity=0.129 Sum_probs=41.8
Q ss_pred ceEEEEEcC----CCc--EEEEecCCCeEE-EEeCCCCc-------eEEEecCCccccccCcceeeeEEEEcCCCCEEEE
Q 023643 203 YLHCIVARN----STN--QIVTGSEDGTAR-IWDCKSGK-------CIKVIDPVKDKQLKGVISCVSCITLDASESWLVR 268 (279)
Q Consensus 203 ~i~~i~~~~----~~~--~l~~~~~d~~i~-vwd~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 268 (279)
..++|+... +++ .+..|..+|.|. +.-...+. .+..+.. .....+|..|.++++..+|..
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v------~~~~~pI~~m~l~~~~~~Lyv 478 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTV------FREPTTISAMELSTKQQQLYI 478 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECC------SSSCCCCCEEEEETTTTEEEE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEee------cCCCCccceEEEcCCCCEEEE
Confidence 456666543 233 467788888764 33222221 2222321 123468899999999999999
Q ss_pred EcCcceEEe
Q 023643 269 VRATNYVIL 277 (279)
Q Consensus 269 ~~~d~~i~~ 277 (279)
++.++.++|
T Consensus 479 ~s~~~V~~v 487 (495)
T 1q47_A 479 GSTAGVAQL 487 (495)
T ss_dssp EBSSCEEEE
T ss_pred EECCeEEEE
Confidence 999887664
No 375
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=46.93 E-value=93 Score=23.65 Aligned_cols=159 Identities=14% Similarity=0.152 Sum_probs=81.4
Q ss_pred CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEe
Q 023643 40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGW 119 (279)
Q Consensus 40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 119 (279)
+...+++.+.+|.|+--.+..-... ......++.. +.+..+....... .|+..+..|.+.-.
T Consensus 4 ~e~~~v~lT~~G~IKr~~~~~~~~~---------------~~~~~~lke~-D~l~~~~~~~t~d--~ll~fT~~Gr~~~~ 65 (323)
T 1wp5_A 4 SEDVIVTVTKDGYVKRTSLRSYAAS---------------NGQDFAMKDT-DRLLAMLEMNTKD--VLLLFTNKGNYLYC 65 (323)
T ss_dssp CCEEEEEEETTCEEEEEEHHHHHHT---------------TTCCCCCCTT-CCEEEEEEEETTS--EEEEEETTSEEEEE
T ss_pred CCcEEEEEeCCCEEEEeEHHHhhhc---------------CccccccCCC-CEEEEEEEECCCC--EEEEEECCCEEEEE
Confidence 6678889999999987765431000 0111123322 3444444444444 67777778887666
Q ss_pred ecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeE-EEcC--CCCeEEEecCCCeEEEEecCCC-----
Q 023643 120 RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAI-AVDP--QGGAIFSAAGDSCAYCWDVESS----- 191 (279)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~--~~~~l~~~~~d~~i~i~d~~~~----- 191 (279)
...+.+.... .-.+.+...... +.....|.++ ...+ ++.+++.++..|.++.-.+..-
T Consensus 66 ~~~elp~~~r--~a~G~~i~~~i~------------L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r 131 (323)
T 1wp5_A 66 PVHELPDIRW--KDLGQHIANIIP------------IDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRY 131 (323)
T ss_dssp EGGGSCBCCT--TSCCEEGGGTSC------------CCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCC
T ss_pred EHHHCcCCCC--CCCCcChhhccC------------CCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccc
Confidence 5433221110 001111100000 0111123433 3332 2557888999999999887421
Q ss_pred -cEEE--EeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC
Q 023643 192 -RIKM--VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK 231 (279)
Q Consensus 192 -~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~ 231 (279)
+-+. .++.. +.+..+........++..+.+|.+..++..
T Consensus 132 ~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ 173 (323)
T 1wp5_A 132 SKPLTGINLKND-DQVVDVHLTDGMNELFLVTHNGYALWFDES 173 (323)
T ss_dssp SSCEECSCCCTT-CCEEEEEEECSCSEEEEEETTSEEEEEEGG
T ss_pred cCceEEEEeCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEEEHH
Confidence 1122 23322 445555444445667777888888777653
No 376
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=46.48 E-value=1e+02 Score=24.11 Aligned_cols=167 Identities=8% Similarity=0.026 Sum_probs=84.0
Q ss_pred cCeEEEEec---CC---CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCcee
Q 023643 91 GPAYDVKFY---GG---NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNA 164 (279)
Q Consensus 91 ~~v~~~~~~---~~---~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 164 (279)
..+..+.+. |. +.+...++=+..+.|.++|+.+.+............ ....+.-.+..- .....+..
T Consensus 152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd--~~~~~~i~G~~~-----~~~~Gi~g 224 (381)
T 3q6k_A 152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAE--RPTKFDYGGKEY-----EFKAGIFG 224 (381)
T ss_dssp GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCC--SCEEEEETTEEE-----EECCCEEE
T ss_pred CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccc--cCcceEECCEEe-----EeccCceE
Confidence 457777777 22 121223444457789999987654332221100000 000010000000 01124889
Q ss_pred EEEcCC----CCeEEEecCCC-eEEEEe---cCCCc---EEEEe--ecCCcceEEEEEc-CCCcEEEEecCCCeEEEEeC
Q 023643 165 IAVDPQ----GGAIFSAAGDS-CAYCWD---VESSR---IKMVF--KGHSDYLHCIVAR-NSTNQIVTGSEDGTARIWDC 230 (279)
Q Consensus 165 ~~~~~~----~~~l~~~~~d~-~i~i~d---~~~~~---~~~~~--~~~~~~i~~i~~~-~~~~~l~~~~~d~~i~vwd~ 230 (279)
|+++|+ ++.|+-....+ .++-.. ++... .+..+ ++....-..+++. .+|.++++--..+.|..|+.
T Consensus 225 IaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~ 304 (381)
T 3q6k_A 225 ITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNT 304 (381)
T ss_dssp EEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEET
T ss_pred EEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeC
Confidence 999997 66666554433 333332 12221 11111 1111233456675 57888888888999999998
Q ss_pred CC-C---ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643 231 KS-G---KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR 270 (279)
Q Consensus 231 ~~-~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 270 (279)
.. . +....+.. ...-.....+++.++|.+.+..+
T Consensus 305 ~~~~~~~~n~~~l~~------d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 305 QKMPLRMKNTDVVYT------SSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp TSCSBCGGGEEEEEE------CTTCCSEEEEEECTTSCEEEEEC
T ss_pred CCCccccCceEEEEE------CCCccccCeEEECCCCeEEEEEC
Confidence 65 1 12223211 12234678888888887666654
No 377
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=45.58 E-value=99 Score=26.44 Aligned_cols=55 Identities=13% Similarity=0.199 Sum_probs=36.8
Q ss_pred eEEEecCCCeEE-EEecCCCc-------EEEEee--cCCcceEEEEEcCCCcEEEEecCCCeEEE
Q 023643 173 AIFSAAGDSCAY-CWDVESSR-------IKMVFK--GHSDYLHCIVARNSTNQIVTGSEDGTARI 227 (279)
Q Consensus 173 ~l~~~~~d~~i~-i~d~~~~~-------~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~v 227 (279)
.++.|+.+|.|+ +.-..... .+.+++ ....+|..|.++++..+|..++.++.++|
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 567788999874 33322211 222222 24567899999999999999998887766
No 378
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=42.22 E-value=1.1e+02 Score=25.67 Aligned_cols=55 Identities=4% Similarity=-0.004 Sum_probs=36.8
Q ss_pred eEEEecCCCeEEEEec-CCC-----cEEEEee--cCCcceEEEEEcCCCcEEEEecCCCeEEE
Q 023643 173 AIFSAAGDSCAYCWDV-ESS-----RIKMVFK--GHSDYLHCIVARNSTNQIVTGSEDGTARI 227 (279)
Q Consensus 173 ~l~~~~~d~~i~i~d~-~~~-----~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~v 227 (279)
.++.|+.+|.|+-.-. ..+ -.+.++. ....+|..|.++++...|..++.++.++|
T Consensus 382 VlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 5677888998754332 222 1222332 24568899999999889988888877666
No 379
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=41.38 E-value=1.7e+02 Score=25.07 Aligned_cols=57 Identities=12% Similarity=0.125 Sum_probs=36.5
Q ss_pred EEEEecCCCeEE-EEeCCCCc-------eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643 215 QIVTGSEDGTAR-IWDCKSGK-------CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL 277 (279)
Q Consensus 215 ~l~~~~~d~~i~-vwd~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 277 (279)
.+..|..+|.|. +.-...+. .+..+.. .....+|..|.++++..+|+.++.++.++|
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v------~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTV------FREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEEC------SSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEee------cCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 477888899864 33222211 1222211 234467899999999999999999887765
No 380
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=41.06 E-value=1.3e+02 Score=23.47 Aligned_cols=230 Identities=13% Similarity=0.156 Sum_probs=0.0
Q ss_pred CCceeeecccc--------ccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcc
Q 023643 2 CGDSTNWDEDA--------YRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSK 73 (279)
Q Consensus 2 dG~v~iw~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 73 (279)
||.|..|=.+. ...............+.-+..+. .....+.-..||.|..|=.+.....-.-.....
T Consensus 19 ~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~----G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~- 93 (389)
T 3kci_A 19 SGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG----GEQTLFAVTADGKLYATGYGAGGRLGIGGTESV- 93 (389)
T ss_dssp --CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE----ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCE-
T ss_pred CCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe----CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCc-
Q ss_pred cceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEe-----------ecCCCccCcceeeeccCcccceE
Q 023643 74 VQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGW-----------RWKEFTESKVPINLQGNHVKPVL 142 (279)
Q Consensus 74 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw-----------~~~~~~~~~~~~~~~~~~~~~~~ 142 (279)
..+...-......+..++.+.... ..+....||.|..| +.........+..+.+
T Consensus 94 ------~~p~~v~~~~~~~~~~v~i~~G~~--h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~------- 158 (389)
T 3kci_A 94 ------STPTLLESIQHVFIKKVAVNSGGK--HCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRG------- 158 (389)
T ss_dssp ------EEEEECGGGTTSCEEEEEECTTCS--EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTT-------
T ss_pred ------cCCEEcccccCCceeEEEECcCCC--eEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCC-------
Q ss_pred EeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCC------------cEEEEeecCCcceEEEEEc
Q 023643 143 DLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS------------RIKMVFKGHSDYLHCIVAR 210 (279)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------------~~~~~~~~~~~~i~~i~~~ 210 (279)
...+.++.-....+....+|.|+.|-.... .+...-......|..++..
T Consensus 159 -------------------~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G 219 (389)
T 3kci_A 159 -------------------IEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACG 219 (389)
T ss_dssp -------------------SCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred -------------------CeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEc
Q ss_pred CCCcEEEEecCCCeEEEE----------eCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643 211 NSTNQIVTGSEDGTARIW----------DCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278 (279)
Q Consensus 211 ~~~~~l~~~~~d~~i~vw----------d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 278 (279)
....+.+.-..||.|..| .-......... ........-+.+..-..+.++-..+|.|..|
T Consensus 220 ~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~--------v~~~~~~~v~~v~~G~~hs~alt~~G~v~~w 289 (389)
T 3kci_A 220 SGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMK--------IDSLTGLGVVKVECGSQFSVALTKSGAVYTW 289 (389)
T ss_dssp CSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEE--------CGGGTTSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred CCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEE--------ecccCCCcEEEEeCCCCEEEEEeCCCeEEEE
No 381
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=38.86 E-value=1.2e+02 Score=22.45 Aligned_cols=170 Identities=13% Similarity=0.105 Sum_probs=90.0
Q ss_pred ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643 25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED 104 (279)
Q Consensus 25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 104 (279)
.+.|.++.. +.. +...++..+.+|.++...+..-. ... . +.....++. .+.+..+.......
T Consensus 67 ~e~i~~v~~-~~~--~~~~~v~~T~~G~iKr~~l~~~~-~~~--------~----G~~~i~lke-gD~l~~~~~~~~~~- 128 (276)
T 3no0_A 67 EEKIVGAFI-REK--FGNRLLLATKKGYVKKIPLAEFE-YKA--------Q----GMPIIKLTE-GDEVVSIASSVDET- 128 (276)
T ss_dssp TCCEEEEEE-GGG--SCSEEEEEETTSEEEEEEGGGTT-TCS--------T----TEECSCCCT-TCCEEEEEECCSSC-
T ss_pred CCEEEEEEC-CcC--CCCEEEEEeCCCEEEEEEHHHhh-hhc--------C----CeEEEecCC-CCEEEEEEEeCCCC-
Confidence 455666644 311 35688889999999998876521 000 0 111222332 34555555555554
Q ss_pred eEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEE
Q 023643 105 ALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAY 184 (279)
Q Consensus 105 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 184 (279)
.++..+..|.+..+...+.+.... .........+ .....|..+...+++..++..+..|.++
T Consensus 129 -~ill~T~~G~~~r~~~~eip~~gR-----~a~Gv~~i~L------------~~~d~vv~~~~~~~~~~ll~~T~~G~~k 190 (276)
T 3no0_A 129 -HILLFTKKGRVARFSVREVPPSTP-----GARGVQGIKL------------EKNDETSGLRIWNGEPYLLVITAKGRVK 190 (276)
T ss_dssp -EEEEEETTSEEEEEEGGGSCBCCT-----TCCCEECCCC------------CTTCCEEEEEEESSCSEEEEEETTSCEE
T ss_pred -EEEEEECCCEEEEEEhhhCCCcCC-----CCCCEEEEcc------------CCCCEEEEEEEeCCCCEEEEEeCCCcEE
Confidence 788888899988887654322100 0000001011 1112345554445566788888899999
Q ss_pred EEecCC-------CcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEE--EeCC
Q 023643 185 CWDVES-------SRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARI--WDCK 231 (279)
Q Consensus 185 i~d~~~-------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~v--wd~~ 231 (279)
...+.. ++-+..+ ...+.+..+........++..+.+|.+.. ++..
T Consensus 191 r~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 191 KISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 887643 2223333 22344444433333445666667777666 6543
No 382
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=38.18 E-value=1.7e+02 Score=24.18 Aligned_cols=23 Identities=4% Similarity=0.043 Sum_probs=18.7
Q ss_pred eeEEEcCCCCeEEEecCCCeEEE
Q 023643 163 NAIAVDPQGGAIFSAAGDSCAYC 185 (279)
Q Consensus 163 ~~~~~~~~~~~l~~~~~d~~i~i 185 (279)
..+.++++...|++++.++.+++
T Consensus 439 ~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 439 RDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp SCCEECTTSSEEEEECSSCEEEE
T ss_pred eeEEEecCCCEEEEEeCCEEEEE
Confidence 47889998899999988776665
No 383
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=31.88 E-value=1.8e+02 Score=22.49 Aligned_cols=99 Identities=12% Similarity=0.067 Sum_probs=47.5
Q ss_pred CeEEEecCCCeEEEEecCC-C---cEEEEeecCCcceEEEEEcC--CCcEEEEecCCC----eEEEEeCCCCceEEEecC
Q 023643 172 GAIFSAAGDSCAYCWDVES-S---RIKMVFKGHSDYLHCIVARN--STNQIVTGSEDG----TARIWDCKSGKCIKVIDP 241 (279)
Q Consensus 172 ~~l~~~~~d~~i~i~d~~~-~---~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~d~----~i~vwd~~~~~~~~~~~~ 241 (279)
..|++|+..| +.+++... + +.... ......|.+|++.| .+..++ +...| .|...+ ..++.-..+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~-~~~~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~-D~G~tW~~~~~ 98 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGP-VFLGHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSD-DGGGNWTEATR 98 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEE-ESTTSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEES-STTSCCEECSB
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCc-cCCCCceEEEEECCCCCCeEEE-EecCCCCCccEEEeC-CCCCCceECCc
Confidence 3677788777 55555432 2 22221 12345799999998 444444 44444 343332 23333233221
Q ss_pred CccccccC--------cceeeeEEEEcCC--CCEEEEEcCcceEE
Q 023643 242 VKDKQLKG--------VISCVSCITLDAS--ESWLVRVRATNYVI 276 (279)
Q Consensus 242 ~~~~~~~~--------~~~~v~~~~~~~~--~~~l~~~~~d~~i~ 276 (279)
.. .+.. ....|.+++++|. ...|.+++..+.|.
T Consensus 99 ~~--~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~ 141 (394)
T 3b7f_A 99 PP--AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLF 141 (394)
T ss_dssp CC--CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEE
T ss_pred cc--cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEE
Confidence 10 0000 1235788999872 34455554444443
No 384
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=30.13 E-value=2.7e+02 Score=24.06 Aligned_cols=29 Identities=7% Similarity=0.069 Sum_probs=19.9
Q ss_pred EEEE-ECCCCCCCCCEEEEec-----CCCcEEEEeCCCC
Q 023643 29 FRTV-WGPSKDGSPDTIVIAS-----SDGSITSYSIPSC 61 (279)
Q Consensus 29 ~~~~-~~~~~~~~~~~l~~~~-----~dg~i~iw~~~~~ 61 (279)
..+. ++| ++++++.+- .-..++++|+.++
T Consensus 132 ~g~~~~~~----~~~~~~~~ls~~G~d~~~~~~~d~~t~ 166 (711)
T 4hvt_A 132 RGVSNCFQ----NPNRYLISMSFGGKDEMFFREWDLEKK 166 (711)
T ss_dssp EEEEECSS----STTEEEEEEEETTCSEEEEEEEETTTT
T ss_pred eceeecCC----CCCEEEEEeCCCCCceeEEEEEECCcC
Confidence 3444 777 888877642 2247999999985
No 385
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=27.22 E-value=2.8e+02 Score=23.25 Aligned_cols=95 Identities=15% Similarity=0.127 Sum_probs=50.4
Q ss_pred CeEEEEecCC---CcEEEEeec-------CCcceEEEEEcCCCcEEE-Eec------CCCeEEEEeCCCCceEEEecCCc
Q 023643 181 SCAYCWDVES---SRIKMVFKG-------HSDYLHCIVARNSTNQIV-TGS------EDGTARIWDCKSGKCIKVIDPVK 243 (279)
Q Consensus 181 ~~i~i~d~~~---~~~~~~~~~-------~~~~i~~i~~~~~~~~l~-~~~------~d~~i~vwd~~~~~~~~~~~~~~ 243 (279)
..++..|+.+ .+.+.++.. +.-.-..|..-.++++++ .|+ ....|.|.|+.+|..+..+....
T Consensus 164 ~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~~~ 243 (570)
T 3hx6_A 164 KGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEVTG 243 (570)
T ss_dssp SEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEECC
T ss_pred cEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEecCC
Confidence 4577777765 445555541 111111233333556533 333 14479999999999998885321
Q ss_pred cccccCcceeeeEEE-EcCC--C--CEEEEEcCcceEEeC
Q 023643 244 DKQLKGVISCVSCIT-LDAS--E--SWLVRVRATNYVILF 278 (279)
Q Consensus 244 ~~~~~~~~~~v~~~~-~~~~--~--~~l~~~~~d~~i~~w 278 (279)
. ......+..++ ++.+ + .++..|...|.|.-+
T Consensus 244 ~---~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRf 280 (570)
T 3hx6_A 244 R---TGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRF 280 (570)
T ss_dssp S---TTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEE
T ss_pred C---CccCCccccceEEecCCCCceeEEEEEeCCCcEEEE
Confidence 0 01112233332 3333 3 478888888877544
No 386
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=26.84 E-value=2.8e+02 Score=23.19 Aligned_cols=67 Identities=9% Similarity=0.015 Sum_probs=43.0
Q ss_pred ceeEEEcC----CC--CeEEEecCCCeEE-EEecCC-------CcEEEEeec-----------CCcceEEEEEcCCCcEE
Q 023643 162 NNAIAVDP----QG--GAIFSAAGDSCAY-CWDVES-------SRIKMVFKG-----------HSDYLHCIVARNSTNQI 216 (279)
Q Consensus 162 i~~~~~~~----~~--~~l~~~~~d~~i~-i~d~~~-------~~~~~~~~~-----------~~~~i~~i~~~~~~~~l 216 (279)
.+.|+... ++ ..++.|+.+|.|+ +..... ...+.++.. ...+|..|.+++....|
T Consensus 405 lT~IaVd~~~g~~~~ytVlFLGTd~G~l~Kvv~~~~~~~~~~~~~~iEEi~vf~~~~~~~~~~~~~pI~~L~ls~~~~~L 484 (565)
T 3oky_B 405 LTKIAVDNAAGPYQNHTVVFLGSEKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRIMGMQLDRASGSL 484 (565)
T ss_dssp EEEEEEEEEETTTTCEEEEEEEETTSEEEEEEECC-----CCCCEEEEEEECCCHHHHCBTTBCCCCCCEEEEEGGGTEE
T ss_pred eEEEEEEEEecCCCceEEEEEECCCCeEEEEEecCCCCccccccEEEEEEEEeccccccccccCCCceEEEEEcCCCCEE
Confidence 46777664 22 3677899999975 433221 112223321 14578899999998999
Q ss_pred EEecCCCeEEEE
Q 023643 217 VTGSEDGTARIW 228 (279)
Q Consensus 217 ~~~~~d~~i~vw 228 (279)
..++.++.++|-
T Consensus 485 YV~s~~~V~qVP 496 (565)
T 3oky_B 485 YVAFSTCVIKVP 496 (565)
T ss_dssp EEECSSCEEEEE
T ss_pred EEEecCeEEEee
Confidence 999988887763
No 387
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=26.84 E-value=2.9e+02 Score=23.30 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=35.7
Q ss_pred EEEEecCCCeEE-EEeCCCCc-----eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643 215 QIVTGSEDGTAR-IWDCKSGK-----CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL 277 (279)
Q Consensus 215 ~l~~~~~d~~i~-vwd~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 277 (279)
.+..|..+|.|. +.....+. .+..+.. .....+|..+.++++...|..++.++.+++
T Consensus 382 VlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~------~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQP------FRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEETTSCEEEEECCCSSTTCCCEEEEEECC------CSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCCcceeEEEEEeec------cCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 466777888764 33222221 1122211 123457899999999999999998887765
No 388
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=24.37 E-value=3.4e+02 Score=23.27 Aligned_cols=66 Identities=15% Similarity=0.206 Sum_probs=42.4
Q ss_pred ceeEEEc----CCCC---eEEEecCCCeEEE-EecCCC-cEEEEeec--CCcceEEEEEcCCC--cEEEEecCCCeEEE
Q 023643 162 NNAIAVD----PQGG---AIFSAAGDSCAYC-WDVESS-RIKMVFKG--HSDYLHCIVARNST--NQIVTGSEDGTARI 227 (279)
Q Consensus 162 i~~~~~~----~~~~---~l~~~~~d~~i~i-~d~~~~-~~~~~~~~--~~~~i~~i~~~~~~--~~l~~~~~d~~i~v 227 (279)
.+.|+.. .+++ .++.|+.+|.|+- ...... ..+..+.. ...+|..|.++++. .+|+.++..+.++|
T Consensus 399 ~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 399 YTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred eEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 4566653 3333 6788999998743 344332 22222222 34688899999987 89999988887766
No 389
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=23.42 E-value=2.3e+02 Score=24.31 Aligned_cols=66 Identities=8% Similarity=-0.029 Sum_probs=41.5
Q ss_pred ceeEEEcCCC--CeEEEecCCCeEEEEecCC----CcEEEEeec--CCcce-EEEEEcCCCcEEEEecCCCeEEE
Q 023643 162 NNAIAVDPQG--GAIFSAAGDSCAYCWDVES----SRIKMVFKG--HSDYL-HCIVARNSTNQIVTGSEDGTARI 227 (279)
Q Consensus 162 i~~~~~~~~~--~~l~~~~~d~~i~i~d~~~----~~~~~~~~~--~~~~i-~~i~~~~~~~~l~~~~~d~~i~v 227 (279)
.+.|+....+ ..++.|+.+|.|+-.-+.. ...+.++.. ...+| ..|.++++..+|..++..+.++|
T Consensus 401 lT~VaV~~~~~~tVlFLGT~~G~l~Kv~~~~~~~~~~~~ee~~v~~~~~pI~~~l~l~~~~~~Lyv~s~~~V~qv 475 (681)
T 3oky_A 401 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 475 (681)
T ss_dssp BCCCEEEEETTEEEEEEEBTTSEEEEEECCCTTTCCEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred eEEEEEEecCceEEEEEECCCceEEEEEECCCCCceEEEEEeeeccCCCceeeeeEEcCCCCEEEEEecCEEEEE
Confidence 3444444322 3577899999987544432 123333322 34566 68999998889988888877766
No 390
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=22.29 E-value=3.3e+02 Score=23.30 Aligned_cols=57 Identities=9% Similarity=0.070 Sum_probs=35.9
Q ss_pred EEEEecCCCeEE-EEeCCCCc-eEEEecCCccccccCcceeeeEEEEcCCC--CEEEEEcCcceEEe
Q 023643 215 QIVTGSEDGTAR-IWDCKSGK-CIKVIDPVKDKQLKGVISCVSCITLDASE--SWLVRVRATNYVIL 277 (279)
Q Consensus 215 ~l~~~~~d~~i~-vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~~ 277 (279)
.+..|..+|.|. +-...... .+..+.. -....+|..|.++++. .+|+.++..+.+++
T Consensus 417 V~flGT~~G~l~Kvv~~~~~~~~~ee~~~------~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 417 VMFVSTDRGALHKAISLEHAVHIIEETQL------FQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEETTSEEEEEEECSSSEEEEEEEEC------CTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCceEEEEecc------cCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 577788888763 33333321 2222211 1234578889999988 89999988887654
No 391
>1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10
Probab=21.27 E-value=1.2e+02 Score=20.82 Aligned_cols=34 Identities=3% Similarity=-0.044 Sum_probs=25.6
Q ss_pred CccCeEEEEecCCCCceEEEEeeCCCcEEEeecCC
Q 023643 89 HDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKE 123 (279)
Q Consensus 89 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 123 (279)
+.+-+.++.|...+ .+-+++...++++.++|.+-
T Consensus 117 g~~hllsl~f~~g~-aHaia~S~~g~~~tlFDPN~ 150 (188)
T 1ukf_A 117 GRKHLLSLRFANVQ-GHAIACSCEGSQFKLFDPNL 150 (188)
T ss_dssp TCEEEEEEEETTTE-EEEEEEEEETTEEEEEETTT
T ss_pred CCceEEEEEecCCC-ceeEEeccCCCeEEEeCCCC
Confidence 45556777777543 47788888899999999864
Done!