BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023644
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 68/124 (54%), Gaps = 1/124 (0%)
Query: 111 GSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCT 170
G+IPS++ ++ L+++ L N L G+IP + Y+ LE L L N L G IPS LSNCT
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSGLSNCT 490
Query: 171 YLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKL 230
L +SL N G IPK IG L L +L + N G IP E G+ L + L TN
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550
Query: 231 QGMI 234
G I
Sbjct: 551 NGTI 554
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 93/216 (43%), Gaps = 47/216 (21%)
Query: 73 HRVTVLNISSLNLTGPIPAQXXXXXXXXXXXXXXXXXXGSIPSAIFT------------- 119
+ +L +S+ + +G IPA+ G+IP+A+F
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573
Query: 120 --IYTLKNVSLHK-------------------NQLSGQIPANICSYL------PFLE--- 149
+Y +KN + K N+LS + P NI S + P +
Sbjct: 574 RYVY-IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632
Query: 150 ---VLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRL 206
L +S NML G IP + + YL IL+L +N+ G+IP E+G+L L +L + N+L
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Query: 207 QGEIPREFGNLAELERMSLATNKLQGMIINFLQFDS 242
G IP+ L L + L+ N L G I QF++
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFET 728
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 68/131 (51%), Gaps = 5/131 (3%)
Query: 122 TLKNVSLHKNQLSGQIPANI--CSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPY 179
TL+ + L N +G+IP + CS L L LS N L G IPS+L + + LR L L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSEL---VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451
Query: 180 NNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFLQ 239
N G IP+E+ + L+ L + N L GEIP N L +SL+ N+L G I ++
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511
Query: 240 FDSSLCLLLYS 250
+L +L S
Sbjct: 512 RLENLAILKLS 522
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 123 LKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNF 182
LK++++ N++SG + + C L FL+V S N GIP L +C+ L+ L + N
Sbjct: 180 LKHLAISGNKISGDVDVSRCVNLEFLDV---SSNNFSTGIP-FLGDCSALQHLDISGNKL 235
Query: 183 LGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFL 238
G + I T+LKLL I N+ G IP L L+ +SLA NK G I +FL
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFL 289
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
Query: 111 GSIP-SAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGI-PSTLSN 168
G +P + + LK + L N+ SG++P ++ + L L LS N G I P+ N
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391
Query: 169 C-TYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLAT 227
L+ L L N F G IP + N ++L L++ N L G IP G+L++L + L
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451
Query: 228 NKLQGMIINFLQFDSSLCLLLYSF 251
N L+G I L + +L L+ F
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDF 475
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 28/164 (17%)
Query: 74 RVTVLNISSLNLTGPIPAQXXXXXXXXXXXXXXXXXXGSIPSAIFTIYTLKNVSLHKNQL 133
+ +LNISS GPIP + +L+ +SL +N+
Sbjct: 248 ELKLLNISSNQFVGPIPP--------------------------LPLKSLQYLSLAENKF 281
Query: 134 SGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKE-IGN 192
+G+IP + L L LS N +G +P +C+ L L+L NNF G +P + +
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341
Query: 193 LTKLKLLYIGVNRLQGEIPREFGNL-AELERMSLATNKLQGMII 235
+ LK+L + N GE+P NL A L + L++N G I+
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
Query: 56 TSICFCNWTGVTCDLHSHRVTVLNISSLNLTGPIPAQXXXXXXXXXXXXXXXXXXGSIPS 115
TS + T T D ++ + L++S L+G IP + GSIP
Sbjct: 616 TSRVYGGHTSPTFD-NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674
Query: 116 AIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIP 163
+ + L + L N+L G+IP + S L L + LS N L G IP
Sbjct: 675 EVGDLRGLNILDLSSNKLDGRIPQAM-SALTMLTEIDLSNNNLSGPIP 721
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 68/124 (54%), Gaps = 1/124 (0%)
Query: 111 GSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCT 170
G+IPS++ ++ L+++ L N L G+IP + Y+ LE L L N L G IPS LSNCT
Sbjct: 429 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSGLSNCT 487
Query: 171 YLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKL 230
L +SL N G IPK IG L L +L + N G IP E G+ L + L TN
Sbjct: 488 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 547
Query: 231 QGMI 234
G I
Sbjct: 548 NGTI 551
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 93/216 (43%), Gaps = 47/216 (21%)
Query: 73 HRVTVLNISSLNLTGPIPAQXXXXXXXXXXXXXXXXXXGSIPSAIFT------------- 119
+ +L +S+ + +G IPA+ G+IP+A+F
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 570
Query: 120 --IYTLKNVSLHK-------------------NQLSGQIPANICSYL------PFLE--- 149
+Y +KN + K N+LS + P NI S + P +
Sbjct: 571 RYVY-IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 629
Query: 150 ---VLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRL 206
L +S NML G IP + + YL IL+L +N+ G+IP E+G+L L +L + N+L
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Query: 207 QGEIPREFGNLAELERMSLATNKLQGMIINFLQFDS 242
G IP+ L L + L+ N L G I QF++
Sbjct: 690 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFET 725
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 68/131 (51%), Gaps = 5/131 (3%)
Query: 122 TLKNVSLHKNQLSGQIPANI--CSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPY 179
TL+ + L N +G+IP + CS L L LS N L G IPS+L + + LR L L
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSEL---VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 448
Query: 180 NNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFLQ 239
N G IP+E+ + L+ L + N L GEIP N L +SL+ N+L G I ++
Sbjct: 449 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 508
Query: 240 FDSSLCLLLYS 250
+L +L S
Sbjct: 509 RLENLAILKLS 519
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 123 LKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNF 182
LK++++ N++SG + + C L FL+V S N GIP L +C+ L+ L + N
Sbjct: 177 LKHLAISGNKISGDVDVSRCVNLEFLDV---SSNNFSTGIP-FLGDCSALQHLDISGNKL 232
Query: 183 LGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFL 238
G + I T+LKLL I N+ G IP L L+ +SLA NK G I +FL
Sbjct: 233 SGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFL 286
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
Query: 111 GSIP-SAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGI-PSTLSN 168
G +P + + LK + L N+ SG++P ++ + L L LS N G I P+ N
Sbjct: 329 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 388
Query: 169 -CTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLAT 227
L+ L L N F G IP + N ++L L++ N L G IP G+L++L + L
Sbjct: 389 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 448
Query: 228 NKLQGMIINFLQFDSSLCLLLYSF 251
N L+G I L + +L L+ F
Sbjct: 449 NMLEGEIPQELMYVKTLETLILDF 472
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 28/164 (17%)
Query: 74 RVTVLNISSLNLTGPIPAQXXXXXXXXXXXXXXXXXXGSIPSAIFTIYTLKNVSLHKNQL 133
+ +LNISS GPIP + +L+ +SL +N+
Sbjct: 245 ELKLLNISSNQFVGPIPP--------------------------LPLKSLQYLSLAENKF 278
Query: 134 SGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKE-IGN 192
+G+IP + L L LS N +G +P +C+ L L+L NNF G +P + +
Sbjct: 279 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 338
Query: 193 LTKLKLLYIGVNRLQGEIPREFGNL-AELERMSLATNKLQGMII 235
+ LK+L + N GE+P NL A L + L++N G I+
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 382
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
Query: 56 TSICFCNWTGVTCDLHSHRVTVLNISSLNLTGPIPAQXXXXXXXXXXXXXXXXXXGSIPS 115
TS + T T D ++ + L++S L+G IP + GSIP
Sbjct: 613 TSRVYGGHTSPTFD-NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 671
Query: 116 AIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIP 163
+ + L + L N+L G+IP + S L L + LS N L G IP
Sbjct: 672 EVGDLRGLNILDLSSNKLDGRIPQAM-SALTMLTEIDLSNNNLSGPIP 718
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 91/208 (43%), Gaps = 28/208 (13%)
Query: 31 DRDALLALKAHITHDPTNFFAKNWNTSICFCNWTGVTCDL--HSHRVTVLNISSLNLTGP 88
D+ ALL +K + +PT + T C W GV CD ++RV L++S LNL P
Sbjct: 7 DKQALLQIKKDL-GNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP 65
Query: 89 IPAQXXXXXXXXXXXXXXXXXXGSIPSAIFTIYTLKNVSLHK-NQLSGQIPANICSYLPF 147
P IPS++ + L + + N L G IP I L
Sbjct: 66 YP----------------------IPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQ 102
Query: 148 LEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQ 207
L L ++ + G IP LS L L YN G +P I +L L + NR+
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 208 GEIPREFGNLAEL-ERMSLATNKLQGMI 234
G IP +G+ ++L M+++ N+L G I
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKI 190
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 186 IPKEIGNLTKLKLLYIG-VNRLQGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSL 244
IP + NL L LYIG +N L G IP L +L + + + G I +FL +L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 245 CLLLYSF 251
L +S+
Sbjct: 128 VTLDFSY 134
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 148 LEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNR 205
L L L N ++G +P L+ +L L++ +NN G IP+ GNL + + N+
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 14/189 (7%)
Query: 55 NTSICFCNWTGVTCDLHSHRVTVL------NISSLNLTG----PIPAQXXXXXXXXXXXX 104
+ +C CN + D S ++T + + L+L +P++
Sbjct: 8 DGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLY 67
Query: 105 XXXXXXGSIPSAIFT-IYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIP 163
++P+ IF + L+ + + N+L +P + L L L L +N L P
Sbjct: 68 LNDNKLQTLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPP 126
Query: 164 STLSNCTYLRILSLPYNNFLGAIPKEI-GNLTKLKLLYIGVNRLQGEIPREFGNLAELER 222
+ T L LSL YN L ++PK + LT LK L + N+L+ F L EL+
Sbjct: 127 RVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185
Query: 223 MSLATNKLQ 231
+ L N+L+
Sbjct: 186 LKLDNNQLK 194
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 60/128 (46%), Gaps = 15/128 (11%)
Query: 112 SIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLH---GGIPSTLSN 168
+IPS I K + L N+LS +P+ L L +L L+ N L GI L N
Sbjct: 30 AIPSNIPA--DTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN 86
Query: 169 CTYLRILSLPYNNFLGAIPKEIG---NLTKLKLLYIGVNRLQGEIPREFGNLAELERMSL 225
L + +N L A+P IG L L L + N+L+ PR F +L +L +SL
Sbjct: 87 LETLWV----TDNKLQALP--IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL 140
Query: 226 ATNKLQGM 233
N+LQ +
Sbjct: 141 GYNELQSL 148
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 13/81 (16%)
Query: 168 NCTYLRILSLPYN------------NFLGAIP-KEIGNLTKLKLLYIGVNRLQGEIPREF 214
+C+ ++ ++P N N L ++P K LTKL+LLY+ N+LQ F
Sbjct: 22 DCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF 81
Query: 215 GNLAELERMSLATNKLQGMII 235
L LE + + NKLQ + I
Sbjct: 82 KELKNLETLWVTDNKLQALPI 102
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 14/155 (9%)
Query: 115 SAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHG---GIPSTLSNCTY 171
SA+ + L + L NQL +P + L L+ L L +N L G+ L+N TY
Sbjct: 79 SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 172 LRILSLPYNNFLGAIPKEI-GNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKL 230
L + Y+N L ++PK + LT L L + N+LQ F L +L+++SL N+L
Sbjct: 138 LYL----YHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQL 193
Query: 231 QGMIINFLQFDSSLCLLL-----YSFVCSLIVFLS 260
+ + +SL + + CS I++LS
Sbjct: 194 KSVPDGVFDRLTSLTHIWLLNNPWDCACSDILYLS 228
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 22/113 (19%)
Query: 143 SYLPFLEVLSLSQNMLHG-GIPSTLSNCTYL-----RILSLP---------------YNN 181
YLP + L+L N LH L+N TYL ++ SLP N
Sbjct: 60 QYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 182 FLGAIPKEI-GNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGM 233
L ++P + LT L LY+ N+LQ F L L R+ L N+LQ +
Sbjct: 120 QLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSL 172
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 122 TLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNN 181
+L+ + + N L+ C++ + VL+LS NML G + L +++L L +NN
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDL-HNN 460
Query: 182 FLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATN 228
+ +IPK++ +L L+ L + N+L+ F L L+ + L N
Sbjct: 461 RIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 148 LEVLSLSQNMLHGGIPSTLSNC--TYLRILSLPYNNFLGAIP--KEIGNLTKLKLLYIGV 203
LE L +S N L +S C LR L L +N+F +P KE GNLTKL L +
Sbjct: 102 LEYLDVSHNRLQN-----ISCCPMASLRHLDLSFNDF-DVLPVCKEFGNLTKLTFLGLSA 155
Query: 204 NRLQ 207
+ +
Sbjct: 156 AKFR 159
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 112 SIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTY 171
S+P+ I + T + L N+L +P + L L LSLSQN + T
Sbjct: 21 SVPTGIPSSAT--RLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK 77
Query: 172 LRILSLPYNNFLGAIPKEI-GNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATN 228
L IL L + N L ++P + LT+LK L + N+L+ F L L+++ L TN
Sbjct: 78 LTILYL-HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 141 ICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEI-GNLTKLKLL 199
+ S+ LE L+L+QN ++ + T+L L+L NFLG+I + NL KL++L
Sbjct: 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS-QNFLGSIDSRMFENLDKLEVL 352
Query: 200 YIGVNRLQGEIPREFGNLAELERMSLATNKLQGM 233
+ N ++ + F L L+ ++L TN+L+ +
Sbjct: 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 4/115 (3%)
Query: 116 AIFTIYT-LKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTL-SNCTYLR 173
++F+ +T L+ ++L +N+++ +I N L L L+LSQN L G I S + N L
Sbjct: 293 SVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLE 350
Query: 174 ILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATN 228
+L L YN+ + L LK L + N+L+ F L L+++ L TN
Sbjct: 351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 61/139 (43%), Gaps = 17/139 (12%)
Query: 126 VSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGA 185
++L NQL + A + L L L L+ N L + T L L L N L +
Sbjct: 64 LNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKS 121
Query: 186 IPKEI-GNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATN--------------KL 230
+P + LTKLK L + N+LQ F L L+ +SL+TN KL
Sbjct: 122 LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181
Query: 231 QGMIINFLQFDSSLCLLLY 249
Q + + QFD S C +LY
Sbjct: 182 QTITLFGNQFDCSRCEILY 200
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 31/121 (25%)
Query: 137 IPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPY----------------- 179
IPA+ E L L L +T T L L+L Y
Sbjct: 33 IPADT-------EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85
Query: 180 ------NNFLGAIPKEI-GNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQG 232
NN L ++P + +LT+L LY+G N+L+ F L +L+ + L TN+LQ
Sbjct: 86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145
Query: 233 M 233
+
Sbjct: 146 I 146
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 60/139 (43%), Gaps = 17/139 (12%)
Query: 126 VSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGA 185
++L NQL + A + L L L L+ N L + T L L L N L +
Sbjct: 64 LNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKS 121
Query: 186 IPKEI-GNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATN--------------KL 230
+P + LTKLK L + N+LQ F L L+ +SL+TN KL
Sbjct: 122 LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181
Query: 231 QGMIINFLQFDSSLCLLLY 249
Q + + QFD S C LY
Sbjct: 182 QTITLFGNQFDCSRCETLY 200
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 31/121 (25%)
Query: 137 IPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPY----------------- 179
IPA+ E L L L +T T L L+L Y
Sbjct: 33 IPADT-------EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85
Query: 180 ------NNFLGAIPKEI-GNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQG 232
NN L ++P + +LT+L LY+G N+L+ F L +L+ + L TN+LQ
Sbjct: 86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145
Query: 233 M 233
+
Sbjct: 146 I 146
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 122 TLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLP-YN 180
+L+ + + +N +S CS+ L L++S N+L T+ C RI L ++
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL----TDTIFRCLPPRIKVLDLHS 430
Query: 181 NFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATN 228
N + +IPK++ L L+ L + N+L+ F L L+++ L TN
Sbjct: 431 NKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Query: 113 IPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYL 172
+P + T+ N+S +N +S ++I S L L +L +S N + S L
Sbjct: 15 VPKDLSQKTTILNIS--QNYISELWTSDILS-LSKLRILIISHNRIQYLDISVFKFNQEL 71
Query: 173 RILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQ 231
L L +N + NL L L + + L I +EFGN+++L+ + L+T L+
Sbjct: 72 EYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDAL--PICKEFGNMSQLKFLGLSTTHLE 128
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 112 SIPSAIFTIYT-LKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCT 170
S+P+ +F T LK + L +NQL +P + L L L+L+ N L T
Sbjct: 99 SLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT 157
Query: 171 YLRILSLPYNNFLGAIPKEI-GNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATN 228
L L L YN L ++P+ + LT+LK L + N+L+ F L L+ + L N
Sbjct: 158 NLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 15/126 (11%)
Query: 115 SAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHG---GIPSTLSNCTY 171
SA+ + L + L NQL +P + L L+ L L +N L G+ L+N TY
Sbjct: 79 SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 172 LRILSLPYNNFLGAIPK----EIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLAT 227
L +L +N L ++PK ++ NLT+L L Y N+LQ F L +L+ + L
Sbjct: 138 L---NLAHNQ-LQSLPKGVFDKLTNLTELDLSY---NQLQSLPEGVFDKLTQLKDLRLYQ 190
Query: 228 NKLQGM 233
N+L+ +
Sbjct: 191 NQLKSV 196
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 147 FLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPY----NNFLGAIPKEI-GNLTKLKLLYI 201
F E+ SL+Q L G +L N + ++ SL Y N L ++P + LT+LK L +
Sbjct: 48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107
Query: 202 GVNRLQGEIPREFGNLAELERMSLATNKLQGM 233
N+LQ F L +L+ + L N+L+ +
Sbjct: 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV 139
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 148 LEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEI-GNLTKLKLLYIGVNRL 206
+E S + + GIP+ TYL + + N L ++P + LT L LY+G N+L
Sbjct: 12 VECYSQGRTSVPTGIPA---QTTYLDLET----NSLKSLPNGVFDELTSLTQLYLGGNKL 64
Query: 207 QGEIPREFGNLAELERMSLATNKLQGM 233
Q F L L ++L+TN+LQ +
Sbjct: 65 QSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 137 IPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGN-LTK 195
+P I + +L++ + S L G+ L++ T L + N L ++P + N LT
Sbjct: 22 VPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYL----GGNKLQSLPNGVFNKLTS 77
Query: 196 LKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGM 233
L L + N+LQ F L +L+ ++L TN+LQ +
Sbjct: 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSL 115
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 190 IGNLTKLKLLYIGVNRLQG-EIPREFGNLAELERMSLATNKLQGM 233
IG+L LK L + N +Q ++P F NL LE + L++NK+Q +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 190 IGNLTKLKLLYIGVNRLQG-EIPREFGNLAELERMSLATNKLQGM 233
IG+L LK L + N +Q ++P F NL LE + L++NK+Q +
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 190 IGNLTKLKLLYIGVNRLQG-EIPREFGNLAELERMSLATNKLQGM 233
IG+L LK L + N +Q ++P F NL LE + L++NK+Q +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 190 IGNLTKLKLLYIGVNRLQG-EIPREFGNLAELERMSLATNKLQGM 233
IG+L LK L + N +Q ++P F NL LE + L++NK+Q +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 190 IGNLTKLKLLYIGVNRLQG-EIPREFGNLAELERMSLATNKLQGM 233
IG+L LK L + N +Q ++P F NL LE + L++NK+Q +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 190 IGNLTKLKLLYIGVNRLQG-EIPREFGNLAELERMSLATNKLQGM 233
IG+L LK L + N +Q ++P F NL LE + L++NK+Q +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 190 IGNLTKLKLLYIGVNRLQG-EIPREFGNLAELERMSLATNKLQGM 233
IG+L LK L + N +Q ++P F NL LE + L++NK+Q +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 190 IGNLTKLKLLYIGVNRLQG-EIPREFGNLAELERMSLATNKLQGM 233
IG+L LK L + N +Q ++P F NL LE + L++NK+Q +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%)
Query: 162 IPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELE 221
+P LSN +L ++ L N + N+T+L L + NRL+ PR F L L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 222 RMSLATNKL 230
+SL N +
Sbjct: 106 LLSLHGNDI 114
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 157 MLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGN 216
+L GIP ++ L L N F +PKE+ N L L+ + NR+ + F N
Sbjct: 24 VLPKGIPRDVTE------LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN 76
Query: 217 LAELERMSLATNKLQ 231
+ +L + L+ N+L+
Sbjct: 77 MTQLLTLILSYNRLR 91
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 22/91 (24%)
Query: 181 NFLGAIPKEIGNLTKLKLLYIGVNRLQG----------------------EIPREFGNLA 218
N L +P EI NL+ L++L + NRL +P EFGNL
Sbjct: 257 NSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLC 316
Query: 219 ELERMSLATNKLQGMIINFLQFDSSLCLLLY 249
L+ + + N L+ + L S L+ Y
Sbjct: 317 NLQFLGVEGNPLEKQFLKILTEKSVTGLIFY 347
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 9/126 (7%)
Query: 113 IPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYL 172
+P T L L K Q+ G LP L L LS N L +P L
Sbjct: 52 MPYTRLTQLNLDRCELTKLQVDGT--------LPVLGTLDLSHNQLQS-LPLLGQTLPAL 102
Query: 173 RILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQG 232
+L + +N + L +L+ LY+ N L+ P +LE++SLA N+L
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
Query: 233 MIINFL 238
+ L
Sbjct: 163 LPAGLL 168
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 23/133 (17%)
Query: 113 IPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHG------GIPS-T 165
+P T L L K Q+ G LP L L LS N L +P+ T
Sbjct: 52 MPYTRLTQLNLDRCELTKLQVDGT--------LPVLGTLDLSHNQLQSLPLLGQTLPALT 103
Query: 166 LSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSL 225
+ + ++ R+ SLP LGA+ L +L+ LY+ N L+ P +LE++SL
Sbjct: 104 VLDVSFNRLTSLP----LGAL----RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 226 ATNKLQGMIINFL 238
A N+L + L
Sbjct: 156 ANNQLTELPAGLL 168
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 23/133 (17%)
Query: 113 IPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHG------GIPS-T 165
+P T L L K Q+ G LP L L LS N L +P+ T
Sbjct: 52 MPYTRLTQLNLDRCELTKLQVDGT--------LPVLGTLDLSHNQLQSLPLLGQTLPALT 103
Query: 166 LSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSL 225
+ + ++ R+ SLP LGA+ L +L+ LY+ N L+ P +LE++SL
Sbjct: 104 VLDVSFNRLTSLP----LGAL----RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 226 ATNKLQGMIINFL 238
A N+L + L
Sbjct: 156 ANNQLTELPAGLL 168
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 23/133 (17%)
Query: 113 IPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHG------GIPS-T 165
+P T L L K Q+ G LP L L LS N L +P+ T
Sbjct: 52 MPYTRLTQLNLDRAELTKLQVDGT--------LPVLGTLDLSHNQLQSLPLLGQTLPALT 103
Query: 166 LSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSL 225
+ + ++ R+ SLP LGA+ L +L+ LY+ N L+ P +LE++SL
Sbjct: 104 VLDVSFNRLTSLP----LGAL----RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 226 ATNKLQGMIINFL 238
A N L + L
Sbjct: 156 ANNNLTELPAGLL 168
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 9/126 (7%)
Query: 113 IPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYL 172
+P T L L K Q+ G LP L L LS N L +P L
Sbjct: 52 MPYTRLTQLNLDRCELTKLQVDGT--------LPVLGTLDLSHNQLQS-LPLLGQTLPAL 102
Query: 173 RILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQG 232
+L + +N + L +L+ LY+ N L+ P +LE++SLA N+L
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
Query: 233 MIINFL 238
+ L
Sbjct: 163 LPAGLL 168
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 114 PSAIFTIYTLKNVSLHKNQLSGQIPANICSYLP--FLEVLSLSQNMLHGGIPSTLS--NC 169
P TI L + L+ QL+ + +C L ++ LSL+ N L ST S
Sbjct: 188 PGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKW 247
Query: 170 TYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLA 226
T L L L YNN L L+ L + N +Q PR F L+ L +SL
Sbjct: 248 TNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLK 304
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 122 TLKNVSLHKNQLSGQIPANICS-YLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYN 180
+++N+SL NQL + L L LS N LH + S LR LSL YN
Sbjct: 223 SIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYN 282
Query: 181 NFLGAIPKEIGNLTKLKLLYIGVNR 205
N P+ L+ L+ Y+ + R
Sbjct: 283 NIQRLSPRSFYGLSNLR--YLSLKR 305
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 23/133 (17%)
Query: 113 IPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHG------GIPS-T 165
+P T L L K Q+ G LP L L LS N L +P+ T
Sbjct: 52 MPYTRLTQLNLDRAELTKLQVDGT--------LPVLGTLDLSHNQLQSLPLLGQTLPALT 103
Query: 166 LSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSL 225
+ + ++ R+ SLP LGA+ L +L+ LY+ N L+ P +LE++SL
Sbjct: 104 VLDVSFNRLTSLP----LGAL----RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 226 ATNKLQGMIINFL 238
A N L + L
Sbjct: 156 ANNNLTELPAGLL 168
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 23/133 (17%)
Query: 113 IPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHG------GIPS-T 165
+P T L L K Q+ G LP L L LS N L +P+ T
Sbjct: 52 MPYTRLTQLNLDRAELTKLQVDGT--------LPVLGTLDLSHNQLQSLPLLGQTLPALT 103
Query: 166 LSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSL 225
+ + ++ R+ SLP LGA+ L +L+ LY+ N L+ P +LE++SL
Sbjct: 104 VLDVSFNRLTSLP----LGAL----RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 226 ATNKLQGMIINFL 238
A N L + L
Sbjct: 156 ANNNLTELPAGLL 168
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Query: 145 LPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVN 204
L L L L+ N + P + S T L L IG L LK L + N
Sbjct: 74 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 133
Query: 205 RLQG-EIPREFGNLAELERMSLATNKLQGMIINFLQF 240
+ ++P F NL L + L+ N +Q + +N LQF
Sbjct: 134 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 170
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 23/133 (17%)
Query: 113 IPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHG------GIPS-T 165
+P T L L K Q+ G LP L L LS N L +P+ T
Sbjct: 52 MPYTRLTQLNLDRCELTKLQVDGT--------LPVLGTLDLSHNQLQSLPLLGQTLPALT 103
Query: 166 LSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSL 225
+ + ++ R+ SLP LGA+ L +L+ LY+ N L+ P +LE++SL
Sbjct: 104 VLDVSFNRLTSLP----LGAL----RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 226 ATNKLQGMIINFL 238
A N L + L
Sbjct: 156 ANNDLTELPAGLL 168
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Query: 145 LPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVN 204
L L L L+ N + P + S T L L IG L LK L + N
Sbjct: 79 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138
Query: 205 RLQG-EIPREFGNLAELERMSLATNKLQGMIINFLQF 240
+ ++P F NL L + L+ N +Q + +N LQF
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 9/126 (7%)
Query: 113 IPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYL 172
+P T L L K Q+ G LP L L LS N L +P L
Sbjct: 52 MPYTRLTQLNLDRCELTKLQVDGT--------LPVLGTLDLSHNQLQS-LPLLGQTLPAL 102
Query: 173 RILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQG 232
+L + +N + L +L+ LY+ N L+ P +LE++SLA N L
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162
Query: 233 MIINFL 238
+ L
Sbjct: 163 LPAGLL 168
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 9/126 (7%)
Query: 113 IPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYL 172
+P T L L K Q+ G LP L L LS N L +P L
Sbjct: 53 MPYTRLTQLNLDRCELTKLQVDGT--------LPVLGTLDLSHNQLQS-LPLLGQTLPAL 103
Query: 173 RILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQG 232
+L + +N + L +L+ LY+ N L+ P +LE++SLA N L
Sbjct: 104 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 163
Query: 233 MIINFL 238
+ L
Sbjct: 164 LPAGLL 169
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 159 HGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPRE-FGNL 217
H +P+ + T +IL L N P +L LK LY+G N+L G +P F +L
Sbjct: 31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSL 87
Query: 218 AELERMSLATNKL 230
+L + L TN+L
Sbjct: 88 TQLTVLDLGTNQL 100
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 10/119 (8%)
Query: 114 PSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLR 173
P ++ LK + L NQL G +P + L L VL L N L + L + + R
Sbjct: 57 PGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQL-----TVLPSAVFDR 110
Query: 174 ILSLPY----NNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATN 228
++ L N L +P+ I LT L L + N+L+ F L+ L L N
Sbjct: 111 LVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 130 KNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKE 189
+++ +PA I + ++L L N + P + L+ L L N LGA+P
Sbjct: 27 RSKRHASVPAGIPTNA---QILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVG 82
Query: 190 I-GNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKL 230
+ +LT+L +L +G N+L F L L+ + + NKL
Sbjct: 83 VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 145 LPFLEVLSLSQNMLH--------GGIPSTLSNCTYLRILSLPYNNFLGAIPKEI-GNLTK 195
L LE+L L N L GG L ++L IL+L N F IP E+ +L +
Sbjct: 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKDLFE 561
Query: 196 LKLLYIGVNRLQGEIPREFGNLAELERMSLATN 228
LK++ +G+N L F N L+ ++L N
Sbjct: 562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 113 IPSAIFTIYT-LKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTY 171
+P+A FT Y+ L ++ + N +S P +C LP L+VL+L N L T + CT
Sbjct: 40 LPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98
Query: 172 LRILSLPYN 180
L L L N
Sbjct: 99 LTELHLMSN 107
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 145 LPFLEVLSLSQNMLH--------GGIPSTLSNCTYLRILSLPYNNFLGAIPKEI-GNLTK 195
L LE+L L N L GG L ++L IL+L N F IP E+ +L +
Sbjct: 513 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKDLFE 571
Query: 196 LKLLYIGVNRLQGEIPREFGNLAELERMSLATN 228
LK++ +G+N L F N L+ ++L N
Sbjct: 572 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 604
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 113 IPSAIFTIYT-LKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTY 171
+P+A FT Y+ L ++ + N +S P +C LP L+VL+L N L T + CT
Sbjct: 50 LPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 108
Query: 172 LRILSLPYN 180
L L L N
Sbjct: 109 LTELHLMSN 117
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 148 LEVLSLSQNMLH--------GGIPSTLSNCTYLRILSLPYNNFLGAIPKEI-GNLTKLKL 198
LE+L L N L GG L ++L IL+L N F IP E+ +L +LK+
Sbjct: 511 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKI 569
Query: 199 LYIGVNRLQGEIPREFGNLAELERMSLATN 228
+ +G+N L F N L+ ++L N
Sbjct: 570 IDLGLNNLNTLPASVFNNQVSLKSLNLQKN 599
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 113 IPSAIFTIYT-LKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTY 171
+P+A FT Y+ L ++ + N +S P +C LP L+VL+L N L T + CT
Sbjct: 45 LPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 103
Query: 172 LRILSLPYN 180
L L L N
Sbjct: 104 LTELHLMSN 112
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 11/126 (8%)
Query: 111 GSIPSAIFT-IYTLKNVSLHKN-QLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSN 168
I +A FT + L+ + L N QL PA L L L L + L P
Sbjct: 69 ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG-LGRLHTLHLDRCGLQELGPGLFRG 127
Query: 169 CTYLRILSLPYNNFLGAIP----KEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMS 224
L+ L L +N L A+P +++GNLT L ++ NR+ R F L L+R+
Sbjct: 128 LAALQYLYL-QDNALQALPDDTFRDLGNLTHL---FLHGNRISSVPERAFRGLHSLDRLL 183
Query: 225 LATNKL 230
L N++
Sbjct: 184 LHQNRV 189
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 11/126 (8%)
Query: 111 GSIPSAIFT-IYTLKNVSLHKN-QLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSN 168
I +A FT + L+ + L N QL PA L L L L + L P
Sbjct: 68 ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG-LGRLHTLHLDRCGLQELGPGLFRG 126
Query: 169 CTYLRILSLPYNNFLGAIP----KEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMS 224
L+ L L +N L A+P +++GNLT L ++ NR+ R F L L+R+
Sbjct: 127 LAALQYLYL-QDNALQALPDDTFRDLGNLTHL---FLHGNRISSVPERAFRGLHSLDRLL 182
Query: 225 LATNKL 230
L N++
Sbjct: 183 LHQNRV 188
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 160 GGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAE 219
GIP+T ++L L N P +LT+L L + VN+L F L +
Sbjct: 36 AGIPTTT------QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTK 89
Query: 220 LERMSLATNKLQGM 233
L ++L N+L+ +
Sbjct: 90 LTHLALHINQLKSI 103
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 19/93 (20%)
Query: 160 GGIPS------TLSNCTYLRILSLPY-------------NNFLGAIPKEIGNLTKLKLLY 200
G PS TL NC +R+ S+P N P +L L+ LY
Sbjct: 4 AGCPSQCSCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLY 63
Query: 201 IGVNRLQGEIPREFGNLAELERMSLATNKLQGM 233
N+L F L +L ++ L N L+ +
Sbjct: 64 FNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 111 GSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLH 159
G +P A + L +++L NQ++ +IPAN C + +E LS + N L
Sbjct: 344 GKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK 390
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 120 IYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPY 179
++ LK +L+ IPAN+ + + L L L N+ +PS L + + S+ +
Sbjct: 122 LHGLKRFRFTTRRLT-HIPANLLTDMRNLSHLELRANIEE--MPSHLFD-DLENLESIEF 177
Query: 180 -NNFLGAIPKEI-GNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATN 228
+N L +P+ I G + KLK L + N+L+ F L L+++ L TN
Sbjct: 178 GSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 141 ICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEI-GNLTKLKLL 199
+ S+ LE L+L+QN ++ + T+L+ L+L N L ++P I LT L+ +
Sbjct: 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQ-LKSVPDGIFDRLTSLQKI 352
Query: 200 YIGVNRLQGEIPR 212
++ N PR
Sbjct: 353 WLHTNPWDCSCPR 365
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,382,432
Number of Sequences: 62578
Number of extensions: 222115
Number of successful extensions: 749
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 570
Number of HSP's gapped (non-prelim): 133
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)