Query 023644
Match_columns 279
No_of_seqs 271 out of 3202
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 05:34:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023644.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023644hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.3E-31 2.9E-36 262.8 18.7 220 27-252 26-246 (968)
2 PLN00113 leucine-rich repeat r 99.9 5.5E-24 1.2E-28 209.2 13.6 178 74-252 141-318 (968)
3 KOG0617 Ras suppressor protein 99.8 1.3E-21 2.7E-26 148.2 -5.4 161 72-239 32-193 (264)
4 KOG4194 Membrane glycoprotein 99.8 2.1E-19 4.6E-24 158.4 4.3 180 72-252 124-327 (873)
5 KOG0617 Ras suppressor protein 99.7 6.9E-20 1.5E-24 138.8 -3.7 154 93-252 29-183 (264)
6 KOG4194 Membrane glycoprotein 99.7 1.2E-18 2.7E-23 153.7 3.3 180 73-252 173-375 (873)
7 PLN03150 hypothetical protein; 99.7 1.3E-16 2.8E-21 149.1 14.8 159 24-187 366-532 (623)
8 KOG0444 Cytoskeletal regulator 99.7 1.2E-18 2.5E-23 155.2 0.3 176 72-252 77-278 (1255)
9 KOG4237 Extracellular matrix p 99.7 8.8E-18 1.9E-22 142.0 2.2 181 71-252 65-356 (498)
10 KOG0444 Cytoskeletal regulator 99.7 8.9E-18 1.9E-22 149.6 -1.2 169 88-262 213-382 (1255)
11 KOG0472 Leucine-rich repeat pr 99.6 5.3E-18 1.2E-22 143.7 -6.7 166 78-253 142-308 (565)
12 cd00116 LRR_RI Leucine-rich re 99.6 1.9E-15 4.2E-20 130.5 3.6 181 72-252 80-288 (319)
13 PLN03210 Resistant to P. syrin 99.5 1.4E-13 3.1E-18 137.2 15.7 103 74-181 590-692 (1153)
14 KOG0472 Leucine-rich repeat pr 99.5 7.9E-16 1.7E-20 130.7 -1.1 173 74-253 363-539 (565)
15 cd00116 LRR_RI Leucine-rich re 99.5 4.4E-15 9.5E-20 128.3 3.3 180 72-252 50-260 (319)
16 PRK15370 E3 ubiquitin-protein 99.5 5.4E-14 1.2E-18 132.8 10.5 159 74-252 200-377 (754)
17 PLN03210 Resistant to P. syrin 99.5 1.9E-13 4.2E-18 136.2 14.3 176 72-252 610-835 (1153)
18 PRK15370 E3 ubiquitin-protein 99.5 1E-13 2.3E-18 130.8 9.5 160 73-252 220-398 (754)
19 KOG0618 Serine/threonine phosp 99.5 9.3E-15 2E-19 135.3 0.5 149 98-250 360-508 (1081)
20 PRK15387 E3 ubiquitin-protein 99.5 3.2E-13 6.9E-18 127.2 10.4 166 72-253 241-456 (788)
21 KOG0618 Serine/threonine phosp 99.4 5.2E-15 1.1E-19 137.0 -3.1 178 72-254 240-488 (1081)
22 PRK15387 E3 ubiquitin-protein 99.4 5.7E-13 1.2E-17 125.5 9.3 85 146-239 382-466 (788)
23 COG4886 Leucine-rich repeat (L 99.4 5.3E-13 1.2E-17 118.9 6.7 171 73-252 116-287 (394)
24 KOG0532 Leucine-rich repeat (L 99.4 1.1E-14 2.5E-19 128.5 -4.2 146 78-232 103-248 (722)
25 KOG0532 Leucine-rich repeat (L 99.4 1.1E-14 2.4E-19 128.6 -4.7 170 74-253 76-245 (722)
26 PLN03150 hypothetical protein; 99.4 1.3E-12 2.8E-17 122.3 8.6 107 147-253 419-526 (623)
27 KOG4237 Extracellular matrix p 99.3 4E-13 8.7E-18 114.1 0.1 98 80-181 53-151 (498)
28 COG4886 Leucine-rich repeat (L 99.2 1.2E-11 2.7E-16 110.1 4.6 155 74-236 141-295 (394)
29 PF14580 LRR_9: Leucine-rich r 99.2 1.4E-11 3E-16 96.3 4.3 126 96-250 18-148 (175)
30 PF14580 LRR_9: Leucine-rich r 99.2 4.2E-11 9.2E-16 93.6 5.6 124 73-201 19-147 (175)
31 KOG1259 Nischarin, modulator o 99.0 2.3E-11 4.9E-16 100.5 -1.3 130 117-253 280-410 (490)
32 KOG3207 Beta-tubulin folding c 99.0 6.4E-11 1.4E-15 102.1 0.7 179 73-252 146-336 (505)
33 KOG1259 Nischarin, modulator o 99.0 5.9E-11 1.3E-15 98.0 -0.2 135 92-233 279-414 (490)
34 KOG3207 Beta-tubulin folding c 99.0 7.3E-11 1.6E-15 101.7 0.3 181 72-253 120-312 (505)
35 PF13855 LRR_8: Leucine rich r 98.9 7.4E-10 1.6E-14 71.4 3.2 58 195-252 2-59 (61)
36 KOG1909 Ran GTPase-activating 98.9 4.9E-10 1.1E-14 94.2 2.7 180 73-253 92-309 (382)
37 PF13855 LRR_8: Leucine rich r 98.9 1.5E-09 3.2E-14 70.1 3.5 61 170-230 1-61 (61)
38 KOG1909 Ran GTPase-activating 98.7 1.6E-08 3.4E-13 85.3 4.1 159 93-252 88-280 (382)
39 KOG4579 Leucine-rich repeat (L 98.6 1.5E-09 3.2E-14 79.8 -2.7 84 121-207 53-136 (177)
40 PF08263 LRRNT_2: Leucine rich 98.6 6.5E-08 1.4E-12 57.5 4.3 40 29-69 2-43 (43)
41 KOG4658 Apoptotic ATPase [Sign 98.6 6.4E-08 1.4E-12 93.5 5.4 127 97-227 523-651 (889)
42 KOG1859 Leucine-rich repeat pr 98.6 1.6E-09 3.5E-14 99.0 -5.2 125 122-253 165-290 (1096)
43 KOG4658 Apoptotic ATPase [Sign 98.5 1.6E-07 3.5E-12 90.8 5.3 103 98-202 546-650 (889)
44 KOG1859 Leucine-rich repeat pr 98.5 1.6E-08 3.5E-13 92.6 -1.6 153 90-253 102-265 (1096)
45 KOG0531 Protein phosphatase 1, 98.4 1.8E-08 3.9E-13 90.4 -3.2 170 75-252 74-265 (414)
46 KOG0531 Protein phosphatase 1, 98.3 8E-08 1.7E-12 86.3 -0.5 171 72-252 94-287 (414)
47 KOG4579 Leucine-rich repeat (L 98.3 4.6E-08 9.9E-13 72.1 -1.9 113 94-211 50-163 (177)
48 KOG2120 SCF ubiquitin ligase, 98.2 1.7E-08 3.7E-13 83.6 -6.8 175 75-251 187-372 (419)
49 PF12799 LRR_4: Leucine Rich r 98.2 2.3E-06 5E-11 50.9 3.4 36 195-231 2-37 (44)
50 PF12799 LRR_4: Leucine Rich r 98.1 4.6E-06 1E-10 49.6 3.8 36 98-134 2-37 (44)
51 COG5238 RNA1 Ran GTPase-activa 98.1 4.1E-06 8.9E-11 68.9 4.5 161 93-254 88-284 (388)
52 KOG1644 U2-associated snRNP A' 98.0 1.1E-05 2.4E-10 63.5 6.0 104 97-204 42-150 (233)
53 KOG2982 Uncharacterized conser 98.0 1E-06 2.3E-11 73.2 -0.2 83 74-156 72-156 (418)
54 KOG3665 ZYG-1-like serine/thre 97.9 5.4E-06 1.2E-10 78.4 3.1 148 97-246 122-279 (699)
55 PRK15386 type III secretion pr 97.8 7.9E-05 1.7E-09 65.7 7.9 131 73-228 52-187 (426)
56 COG5238 RNA1 Ran GTPase-activa 97.8 3.9E-05 8.4E-10 63.3 5.5 158 74-232 93-286 (388)
57 KOG2120 SCF ubiquitin ligase, 97.8 1.9E-06 4.2E-11 71.6 -2.2 171 74-246 211-391 (419)
58 PRK15386 type III secretion pr 97.8 7.2E-05 1.6E-09 66.0 6.9 135 93-252 48-187 (426)
59 KOG1644 U2-associated snRNP A' 97.7 4E-05 8.8E-10 60.4 4.4 105 121-228 42-150 (233)
60 KOG3665 ZYG-1-like serine/thre 97.6 5.2E-05 1.1E-09 71.9 4.5 176 74-252 61-260 (699)
61 PF13306 LRR_5: Leucine rich r 97.6 0.00018 3.8E-09 53.4 6.4 102 119-226 10-111 (129)
62 PF13306 LRR_5: Leucine rich r 97.4 0.00042 9.1E-09 51.3 5.9 122 92-220 7-128 (129)
63 KOG2739 Leucine-rich acidic nu 97.4 7.8E-05 1.7E-09 61.0 1.6 82 166-249 61-150 (260)
64 KOG2982 Uncharacterized conser 97.3 6.7E-05 1.4E-09 62.7 0.9 189 62-250 85-287 (418)
65 KOG2739 Leucine-rich acidic nu 96.9 0.00059 1.3E-08 55.9 2.7 39 120-159 64-104 (260)
66 KOG2123 Uncharacterized conser 96.7 0.00012 2.6E-09 60.6 -2.7 86 96-187 18-105 (388)
67 KOG2123 Uncharacterized conser 96.6 0.00014 3.1E-09 60.2 -3.2 99 73-176 19-123 (388)
68 PF00560 LRR_1: Leucine Rich R 96.1 0.003 6.4E-08 31.3 1.2 17 196-213 2-18 (22)
69 PF00560 LRR_1: Leucine Rich R 96.1 0.0028 6E-08 31.4 1.0 20 219-239 1-20 (22)
70 KOG4308 LRR-containing protein 94.6 0.00022 4.9E-09 64.8 -10.4 178 75-253 89-301 (478)
71 PF13504 LRR_7: Leucine rich r 94.6 0.025 5.4E-07 26.0 1.4 13 122-134 2-14 (17)
72 smart00369 LRR_TYP Leucine-ric 94.6 0.039 8.4E-07 28.3 2.3 21 121-142 2-22 (26)
73 smart00370 LRR Leucine-rich re 94.6 0.039 8.4E-07 28.3 2.3 21 121-142 2-22 (26)
74 KOG3864 Uncharacterized conser 92.8 0.016 3.4E-07 46.1 -1.7 82 146-227 101-185 (221)
75 KOG4308 LRR-containing protein 92.7 0.0012 2.6E-08 60.2 -9.3 162 72-233 114-305 (478)
76 KOG0473 Leucine-rich repeat pr 92.4 0.0035 7.7E-08 50.8 -5.8 85 93-181 38-122 (326)
77 KOG0473 Leucine-rich repeat pr 91.8 0.0054 1.2E-07 49.8 -5.3 85 118-206 39-123 (326)
78 KOG1947 Leucine rich repeat pr 91.6 0.08 1.7E-06 48.1 1.2 15 215-229 359-373 (482)
79 PF13516 LRR_6: Leucine Rich r 90.9 0.12 2.6E-06 25.9 0.9 20 218-237 2-21 (24)
80 smart00369 LRR_TYP Leucine-ric 90.7 0.24 5.3E-06 25.2 2.0 16 218-233 2-17 (26)
81 smart00370 LRR Leucine-rich re 90.7 0.24 5.3E-06 25.2 2.0 16 218-233 2-17 (26)
82 KOG1947 Leucine rich repeat pr 90.3 0.22 4.8E-06 45.3 2.8 61 169-229 242-306 (482)
83 KOG3864 Uncharacterized conser 86.3 0.093 2E-06 41.8 -2.1 81 122-203 102-185 (221)
84 smart00364 LRR_BAC Leucine-ric 84.3 0.68 1.5E-05 23.8 1.3 17 122-139 3-19 (26)
85 KOG4341 F-box protein containi 77.6 2.2 4.7E-05 38.0 2.8 32 218-249 401-433 (483)
86 smart00365 LRR_SD22 Leucine-ri 74.1 2.8 6.1E-05 21.5 1.6 14 218-231 2-15 (26)
87 smart00368 LRR_RI Leucine rich 69.8 3.3 7.1E-05 21.5 1.3 13 219-231 3-15 (28)
88 KOG4341 F-box protein containi 68.5 2.7 5.9E-05 37.4 1.4 104 168-279 318-430 (483)
89 TIGR00864 PCC polycystin catio 47.5 16 0.00034 40.5 2.9 32 103-134 1-32 (2740)
90 PF07172 GRP: Glycine rich pro 40.6 22 0.00048 24.8 1.9 8 2-9 1-8 (95)
91 KOG3763 mRNA export factor TAP 38.5 26 0.00057 32.6 2.5 62 121-183 218-283 (585)
92 KOG3763 mRNA export factor TAP 37.1 20 0.00044 33.2 1.6 36 96-131 217-254 (585)
93 TIGR00864 PCC polycystin catio 36.9 22 0.00048 39.5 2.0 32 176-207 1-32 (2740)
94 smart00367 LRR_CC Leucine-rich 30.3 37 0.0008 16.9 1.3 11 121-131 2-12 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.98 E-value=1.3e-31 Score=262.85 Aligned_cols=220 Identities=37% Similarity=0.636 Sum_probs=160.7
Q ss_pred CChhHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCccceEecCCCCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCC
Q 023644 27 TITTDRDALLALKAHITHDPTNFFAKNWNTSICFCNWTGVTCDLHSHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSC 106 (279)
Q Consensus 27 ~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 106 (279)
..+.|..+|++||+++. +|...+.. |....++|.|.|++|+. .++|+.|+++++++.+.+++.+..+++|+.|++++
T Consensus 26 ~~~~~~~~l~~~~~~~~-~~~~~~~~-w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~ 102 (968)
T PLN00113 26 LHAEELELLLSFKSSIN-DPLKYLSN-WNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSN 102 (968)
T ss_pred CCHHHHHHHHHHHHhCC-CCcccCCC-CCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCC
Confidence 35689999999999994 67666666 98878899999999984 56899999999999999999999999999999999
Q ss_pred CcCCCccccccc-CCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCC
Q 023644 107 NRLSGSIPSAIF-TIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGA 185 (279)
Q Consensus 107 n~l~~~~p~~l~-~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 185 (279)
|.+.+.+|..+. .+++|++|++++|.++|.+|. ..+++|++|++++|.+++.+|..++.+++|++|++++|.+.+.
T Consensus 103 n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 179 (968)
T PLN00113 103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK 179 (968)
T ss_pred CccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc
Confidence 999988887765 778888888888887766664 3355666666666666656666666666666666666666656
Q ss_pred CcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 186 IPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 186 ~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..++.+++|++|++++|
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 246 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246 (968)
T ss_pred CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc
Confidence 6666666666666666666666555656666666666666666665555555555666666666554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=5.5e-24 Score=209.19 Aligned_cols=178 Identities=35% Similarity=0.531 Sum_probs=103.2
Q ss_pred cEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEe
Q 023644 74 RVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSL 153 (279)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l 153 (279)
+++.|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+ ..+++|++|++
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L 219 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLKWIYL 219 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCCccEEEC
Confidence 44555555555555555555555666666666665555555555556666666666665555555554 55555666666
Q ss_pred ecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCccccc
Q 023644 154 SQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGM 233 (279)
Q Consensus 154 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 233 (279)
++|.+++.+|..++.+++|++|++++|.+++.+|..++++++|++|++++|.+++.+|..+.++++|++|++++|.+.+.
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 299 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE 299 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC
Confidence 66655555555555555666666665555555555555555555555555555555555555555555555555555555
Q ss_pred chhhhhCCCCCCEEEcccC
Q 023644 234 IINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 234 ~~~~l~~l~~L~~L~l~~n 252 (279)
+|..+..+++|++|++++|
T Consensus 300 ~p~~~~~l~~L~~L~l~~n 318 (968)
T PLN00113 300 IPELVIQLQNLEILHLFSN 318 (968)
T ss_pred CChhHcCCCCCcEEECCCC
Confidence 5555555555555555554
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.79 E-value=1.3e-21 Score=148.16 Aligned_cols=161 Identities=32% Similarity=0.523 Sum_probs=147.7
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
..+++.|.+++|.++ .+|+.++.+.+|+.|++.+|+++ .+|..+++++.|++|+++.|++. .+|..+ +.++.|+.|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgf-gs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGF-GSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcccc-CCCchhhhh
Confidence 567999999999999 67889999999999999999998 78999999999999999999998 889887 999999999
Q ss_pred EeecccCC-CCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcc
Q 023644 152 SLSQNMLH-GGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKL 230 (279)
Q Consensus 152 ~l~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l 230 (279)
++.+|++. ..+|..|..++.|+.|.+++|.|. .+|..++++++|+.|.+.+|.+- .+|..++.++.|+.|.+.+|.+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 99999986 358999999999999999999988 88999999999999999999988 8899999999999999999999
Q ss_pred cccchhhhh
Q 023644 231 QGMIINFLQ 239 (279)
Q Consensus 231 ~~~~~~~l~ 239 (279)
+-.+| .++
T Consensus 186 ~vlpp-el~ 193 (264)
T KOG0617|consen 186 TVLPP-ELA 193 (264)
T ss_pred eecCh-hhh
Confidence 85554 344
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.77 E-value=2.1e-19 Score=158.42 Aligned_cols=180 Identities=24% Similarity=0.267 Sum_probs=113.4
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCC------------------------CEEECCCCcCCCcccccccCCCCCCEEE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSL------------------------QSLNLSCNRLSGSIPSAIFTIYTLKNVS 127 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L------------------------~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 127 (279)
.++++.|+|.+|.|..+-.+++..++.| ++|++++|+|+..--..|.++.+|..|.
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence 4567788877777765444444444444 4445555554443344455555566666
Q ss_pred ccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeeccccccc
Q 023644 128 LHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQ 207 (279)
Q Consensus 128 l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 207 (279)
|+.|+++ .+|...|+.+++|+.|++..|.+.-.--..|.++.+|+.+.+..|.+...-...|..+.++++|+|+.|+++
T Consensus 204 LsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~ 282 (873)
T KOG4194|consen 204 LSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ 282 (873)
T ss_pred cccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh
Confidence 6666665 666666666666666666666654222234455555555555555555444445556667777777777777
Q ss_pred ccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 208 GEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 208 ~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
..-..++.+++.|++|++|+|.|....++.+.-.++|++|++++|
T Consensus 283 ~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 283 AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN 327 (873)
T ss_pred hhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc
Confidence 666667777888888888888887777777777778888888877
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.73 E-value=6.9e-20 Score=138.77 Aligned_cols=154 Identities=31% Similarity=0.462 Sum_probs=143.1
Q ss_pred CCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcC
Q 023644 93 LGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYL 172 (279)
Q Consensus 93 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 172 (279)
+-++.+++.|.+++|.++ .+|+.+..+.+|+.|++++|+++ .+|..+ +.+++|+.|++.-|++. .+|..|+.++.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~i-ssl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSI-SSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhh-hhchhhhheecchhhhh-cCccccCCCchh
Confidence 445788999999999998 78889999999999999999999 999999 99999999999999997 899999999999
Q ss_pred ceeeccCccCCC-CCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEccc
Q 023644 173 RILSLPYNNFLG-AIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSF 251 (279)
Q Consensus 173 ~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 251 (279)
+.||+++|++.. .+|..|..+..|+-|++++|.+. .+|..++++++|+.|.+..|.+- ..|..++.+++|++|.+.+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 999999999864 68888989999999999999998 89999999999999999999876 5788999999999999999
Q ss_pred C
Q 023644 252 V 252 (279)
Q Consensus 252 n 252 (279)
|
T Consensus 183 n 183 (264)
T KOG0617|consen 183 N 183 (264)
T ss_pred c
Confidence 8
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.73 E-value=1.2e-18 Score=153.65 Aligned_cols=180 Identities=24% Similarity=0.213 Sum_probs=121.2
Q ss_pred CcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcc-----------------
Q 023644 73 HRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSG----------------- 135 (279)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~----------------- 135 (279)
.+++.|+|++|.|+..-...|..+.+|..|.++.|+++...+..|.++++|+.|+|..|++.-
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 457777777777775555566666677777777777764434444446666666666555540
Q ss_pred ------cCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeeccccccccc
Q 023644 136 ------QIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGE 209 (279)
Q Consensus 136 ------~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 209 (279)
.+.+..|-.+.++++|++..|+++..--.++.++++|+.|++++|.+...-++.+...++|++|+|+.|+++..
T Consensus 253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l 332 (873)
T KOG4194|consen 253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL 332 (873)
T ss_pred hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccC
Confidence 44445555566666666666666644445566777777777777777766667777777777777777777766
Q ss_pred ccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 210 IPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 210 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
-++.|..++.|+.|.|++|.++..--..|..+++|++||++.|
T Consensus 333 ~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N 375 (873)
T KOG4194|consen 333 DEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN 375 (873)
T ss_pred ChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC
Confidence 6667777777777777777777655556777888888888877
No 7
>PLN03150 hypothetical protein; Provisional
Probab=99.71 E-value=1.3e-16 Score=149.06 Aligned_cols=159 Identities=31% Similarity=0.525 Sum_probs=129.2
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCCccCCCCCCCCCC---CCccceEecCCC----CcEEEEEeCCCCCCccCCccCCCC
Q 023644 24 NTSTITTDRDALLALKAHITHDPTNFFAKNWNTSICF---CNWTGVTCDLHS----HRVTVLNISSLNLTGPIPAQLGNL 96 (279)
Q Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~---c~w~gv~c~~~~----~~l~~L~l~~~~l~~~~~~~~~~l 96 (279)
...+.+.|..+|..+|..+. ++.. .. |..+.|. |.|.|+.|.... ..++.|+|+++++.|.+|..+..+
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~-~~~~--~~-W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L 441 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLG-LPLR--FG-WNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKL 441 (623)
T ss_pred ccccCchHHHHHHHHHHhcC-Cccc--CC-CCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCC
Confidence 34567789999999999884 3321 24 8765431 379999996211 258999999999999999999999
Q ss_pred CCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcC-CcCcee
Q 023644 97 SSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNC-TYLRIL 175 (279)
Q Consensus 97 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l-~~L~~L 175 (279)
++|+.|++++|.+.|.+|..+..+++|+.|++++|.++|.+|+.+ +.+++|++|++++|.++|.+|..+... .++..+
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH-hcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 999999999999999999999999999999999999999999887 889999999999999999999888753 466788
Q ss_pred eccCccCCCCCc
Q 023644 176 SLPYNNFLGAIP 187 (279)
Q Consensus 176 ~l~~n~l~~~~p 187 (279)
++.+|......|
T Consensus 521 ~~~~N~~lc~~p 532 (623)
T PLN03150 521 NFTDNAGLCGIP 532 (623)
T ss_pred EecCCccccCCC
Confidence 888886544333
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.71 E-value=1.2e-18 Score=155.19 Aligned_cols=176 Identities=26% Similarity=0.301 Sum_probs=126.9
Q ss_pred CCcEEEEEeCCCCCCc-cCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcE
Q 023644 72 SHRVTVLNISSLNLTG-PIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEV 150 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~ 150 (279)
.+.++.+++..|++.. -+|+.+-.+..|+.||+++|+++ ..|..+..-+++-.|++++|++. +||..+|.++..|-+
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLF 154 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhh
Confidence 4557778888888763 47888888999999999999998 78988888889999999999998 999999999999999
Q ss_pred EEeecccCCCCChhhhhcCCcCceeeccCccCCC-------------------------CCcccccCCCCcceeeccccc
Q 023644 151 LSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLG-------------------------AIPKEIGNLTKLKLLYIGVNR 205 (279)
Q Consensus 151 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-------------------------~~p~~l~~l~~L~~L~l~~n~ 205 (279)
|++++|++. .+|+.+..+..|++|.+++|.+.. .+|.++-.+.+|..+|++.|.
T Consensus 155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~ 233 (1255)
T KOG0444|consen 155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN 233 (1255)
T ss_pred hccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence 999999987 788888888899999999886543 234444444455555555555
Q ss_pred ccccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 206 LQGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 206 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
+. .+|+.+.++.+|+.|+||+|.++.. ....+...+|+.|+++.|
T Consensus 234 Lp-~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 234 LP-IVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRN 278 (1255)
T ss_pred CC-cchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccc
Confidence 54 5555555555555555555555422 222334445555555555
No 9
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.68 E-value=8.8e-18 Score=142.04 Aligned_cols=181 Identities=22% Similarity=0.215 Sum_probs=129.1
Q ss_pred CCCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccC-CcCcccCchHHhhCCCCCc
Q 023644 71 HSHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHK-NQLSGQIPANICSYLPFLE 149 (279)
Q Consensus 71 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~-n~l~~~lp~~~~~~l~~L~ 149 (279)
.+...+.|+|..|+|+...+..|+.+++|+.|||++|+|+.+-|++|.++.+|..|.+.+ |+|+ .+|...|..+..++
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQ 143 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHH
Confidence 466789999999999977778999999999999999999988999999999987776655 8888 78877766655554
Q ss_pred EEEeecccCCCCCh------------------------------------------------------------------
Q 023644 150 VLSLSQNMLHGGIP------------------------------------------------------------------ 163 (279)
Q Consensus 150 ~L~l~~n~l~~~~p------------------------------------------------------------------ 163 (279)
.|.+.-|++.-...
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 44444333321111
Q ss_pred --------------------------------------------hhhhcCCcCceeeccCccCCCCCcccccCCCCccee
Q 023644 164 --------------------------------------------STLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLL 199 (279)
Q Consensus 164 --------------------------------------------~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 199 (279)
..|..+++|+.|++++|++++.-+..|..+..+++|
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 112345566666666666666666666666666666
Q ss_pred ecccccccccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 200 YIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 200 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
.|..|++...-...|.+++.|+.|+|.+|+|+...|-.|..+.+|..|++-.|
T Consensus 304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence 66666666444555667777777777777777766777777777777776555
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.65 E-value=8.9e-18 Score=149.60 Aligned_cols=169 Identities=24% Similarity=0.375 Sum_probs=150.1
Q ss_pred cCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhh
Q 023644 88 PIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLS 167 (279)
Q Consensus 88 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 167 (279)
.+|+++..+.+|+.+|++.|++. .+|+.+..+++|+.|++++|.++ .+.... ..+.+|++|++++|+++ .+|+.++
T Consensus 213 N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~-~~W~~lEtLNlSrNQLt-~LP~avc 288 (1255)
T KOG0444|consen 213 NIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTE-GEWENLETLNLSRNQLT-VLPDAVC 288 (1255)
T ss_pred cCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccH-HHHhhhhhhccccchhc-cchHHHh
Confidence 37888889999999999999998 89999999999999999999998 777666 67889999999999998 8999999
Q ss_pred cCCcCceeeccCccCCC-CCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCE
Q 023644 168 NCTYLRILSLPYNNFLG-AIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCL 246 (279)
Q Consensus 168 ~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 246 (279)
.++.|+.|.+.+|+++- -+|+.++.+.+|+++..++|.+. ..|+.+..+..|+.|.|+.|.+. .+|+.+.-++.|+.
T Consensus 289 KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~v 366 (1255)
T KOG0444|consen 289 KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKV 366 (1255)
T ss_pred hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcce
Confidence 99999999999998753 57999999999999999999997 88999999999999999999876 47888889999999
Q ss_pred EEcccCccceeeccCC
Q 023644 247 LLYSFVCSLIVFLSDG 262 (279)
Q Consensus 247 L~l~~n~~~~~~~~~~ 262 (279)
||+..|+.++.+-...
T Consensus 367 LDlreNpnLVMPPKP~ 382 (1255)
T KOG0444|consen 367 LDLRENPNLVMPPKPN 382 (1255)
T ss_pred eeccCCcCccCCCCcc
Confidence 9999997765544433
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.61 E-value=5.3e-18 Score=143.75 Aligned_cols=166 Identities=28% Similarity=0.405 Sum_probs=80.3
Q ss_pred EEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeeccc
Q 023644 78 LNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNM 157 (279)
Q Consensus 78 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~ 157 (279)
++..+|++. .+|+.+..+..+..+++.+|.+... |+..-.++.|+++|...|.++ .+|+++ +.+.+|+.|++.+|.
T Consensus 142 l~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l-~~~~i~m~~L~~ld~~~N~L~-tlP~~l-g~l~~L~~LyL~~Nk 217 (565)
T KOG0472|consen 142 LDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKAL-PENHIAMKRLKHLDCNSNLLE-TLPPEL-GGLESLELLYLRRNK 217 (565)
T ss_pred hhccccccc-cCchHHHHHHHHHHhhccccchhhC-CHHHHHHHHHHhcccchhhhh-cCChhh-cchhhhHHHHhhhcc
Confidence 333444444 3344444444444444444444422 222222444555555555444 455544 445555555555555
Q ss_pred CCCCChhhhhcCCcCceeeccCccCCCCCccccc-CCCCcceeecccccccccccccccCCCCCCEEeccCCcccccchh
Q 023644 158 LHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIG-NLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIIN 236 (279)
Q Consensus 158 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~ 236 (279)
+. .+| .|.++..|..++++.|.+. .+|.+.. +++++.+||+.+|+++ ..|..+.-+.+|++||+|+|.+++ .|.
T Consensus 218 i~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~ 292 (565)
T KOG0472|consen 218 IR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPY 292 (565)
T ss_pred cc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCc
Confidence 44 334 4445555555555555444 3443332 5555555555555555 555555555555555655555553 334
Q ss_pred hhhCCCCCCEEEcccCc
Q 023644 237 FLQFDSSLCLLLYSFVC 253 (279)
Q Consensus 237 ~l~~l~~L~~L~l~~n~ 253 (279)
.++++ +|+.|.+.+|+
T Consensus 293 sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 293 SLGNL-HLKFLALEGNP 308 (565)
T ss_pred ccccc-eeeehhhcCCc
Confidence 45555 55555555553
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.55 E-value=1.9e-15 Score=130.52 Aligned_cols=181 Identities=22% Similarity=0.218 Sum_probs=131.1
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCC---CCEEECCCCcCCC----cccccccCC-CCCCEEEccCCcCcccCchH---
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSS---LQSLNLSCNRLSG----SIPSAIFTI-YTLKNVSLHKNQLSGQIPAN--- 140 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~---L~~L~l~~n~l~~----~~p~~l~~l-~~L~~L~l~~n~l~~~lp~~--- 140 (279)
..+++.|+++++.+.+..+..+..+.. |++|++++|.+++ .+...+..+ ++|+.|++++|.+++.....
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 558999999999987655555544444 9999999998873 233445666 88999999999987432222
Q ss_pred HhhCCCCCcEEEeecccCCCC----ChhhhhcCCcCceeeccCccCCCC----CcccccCCCCcceeecccccccccccc
Q 023644 141 ICSYLPFLEVLSLSQNMLHGG----IPSTLSNCTYLRILSLPYNNFLGA----IPKEIGNLTKLKLLYIGVNRLQGEIPR 212 (279)
Q Consensus 141 ~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~~p~ 212 (279)
.+..+.+|++|++++|.+++. ++..+...++|+.|++++|.+.+. ++..+..+++|++|++++|.+++....
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 235667899999999988743 334455667999999999988743 334456678899999999998863333
Q ss_pred ccc-----CCCCCCEEeccCCcccc----cchhhhhCCCCCCEEEcccC
Q 023644 213 EFG-----NLAELERMSLATNKLQG----MIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 213 ~l~-----~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n 252 (279)
.+. ..+.|++|++++|.++. .+...+..+++|+++++++|
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 322 24789999999998872 34456667789999999988
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.54 E-value=1.4e-13 Score=137.21 Aligned_cols=103 Identities=20% Similarity=0.307 Sum_probs=49.4
Q ss_pred cEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEe
Q 023644 74 RVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSL 153 (279)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l 153 (279)
+++.|++.++.+. .+|..+ ...+|+.|++.++.+. .++..+..+++|+.|+++++...+.+|. + ..+++|++|++
T Consensus 590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-l-s~l~~Le~L~L 664 (1153)
T PLN03210 590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-L-SMATNLETLKL 664 (1153)
T ss_pred ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-c-ccCCcccEEEe
Confidence 3445555544443 334333 2345555555555554 3444445555555555554432224443 2 34555555555
Q ss_pred ecccCCCCChhhhhcCCcCceeeccCcc
Q 023644 154 SQNMLHGGIPSTLSNCTYLRILSLPYNN 181 (279)
Q Consensus 154 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 181 (279)
++|.....+|..+..+++|+.|++++|.
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCC
Confidence 5544333455555555555555555443
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.52 E-value=7.9e-16 Score=130.72 Aligned_cols=173 Identities=27% Similarity=0.388 Sum_probs=101.9
Q ss_pred cEEEEEeCCCCCCccCCccCCC---CCCCCEEECCCCcCCCcccccccCCCCCCE-EEccCCcCcccCchHHhhCCCCCc
Q 023644 74 RVTVLNISSLNLTGPIPAQLGN---LSSLQSLNLSCNRLSGSIPSAIFTIYTLKN-VSLHKNQLSGQIPANICSYLPFLE 149 (279)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~~~~---l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~-L~l~~n~l~~~lp~~~~~~l~~L~ 149 (279)
+.+.|++++-+++ .+|...-. -.-.+..+++.|++. .+|..+..++.+.. +++++|.+. -+|..+ +.+++|.
T Consensus 363 ~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l-~~l~kLt 438 (565)
T KOG0472|consen 363 TTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLEL-SQLQKLT 438 (565)
T ss_pred hhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHH-Hhhhcce
Confidence 3455666666666 33433221 122566666777665 55665555544433 444555553 444444 6666666
Q ss_pred EEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCc
Q 023644 150 VLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNK 229 (279)
Q Consensus 150 ~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 229 (279)
.|++++|-+. .+|..++.+..||+++++.|+|. .+|..+..+..++.+-.++|++...-|+.+.++.+|..||+.+|.
T Consensus 439 ~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd 516 (565)
T KOG0472|consen 439 FLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND 516 (565)
T ss_pred eeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCc
Confidence 6666666655 66666666666666666666665 566655555555555555666664444446666666666666666
Q ss_pred ccccchhhhhCCCCCCEEEcccCc
Q 023644 230 LQGMIINFLQFDSSLCLLLYSFVC 253 (279)
Q Consensus 230 l~~~~~~~l~~l~~L~~L~l~~n~ 253 (279)
+. .+|..+++|++|++|++++|+
T Consensus 517 lq-~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 517 LQ-QIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hh-hCChhhccccceeEEEecCCc
Confidence 65 445556666666666666664
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.52 E-value=4.4e-15 Score=128.31 Aligned_cols=180 Identities=25% Similarity=0.273 Sum_probs=134.4
Q ss_pred CCcEEEEEeCCCCCCc------cCCccCCCCCCCCEEECCCCcCCCcccccccCCCC---CCEEEccCCcCcc----cCc
Q 023644 72 SHRVTVLNISSLNLTG------PIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYT---LKNVSLHKNQLSG----QIP 138 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~------~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~---L~~L~l~~n~l~~----~lp 138 (279)
.+.++.++++++.+.+ .++..+..+++|+.|++++|.+.+..+..+..+.. |++|++++|.+++ .+.
T Consensus 50 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~ 129 (319)
T cd00116 50 QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA 129 (319)
T ss_pred CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH
Confidence 3458888888887762 23445677889999999999998666666655555 9999999999873 122
Q ss_pred hHHhhCC-CCCcEEEeecccCCCC----ChhhhhcCCcCceeeccCccCCCC----CcccccCCCCcceeeccccccccc
Q 023644 139 ANICSYL-PFLEVLSLSQNMLHGG----IPSTLSNCTYLRILSLPYNNFLGA----IPKEIGNLTKLKLLYIGVNRLQGE 209 (279)
Q Consensus 139 ~~~~~~l-~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~ 209 (279)
..+ ..+ ++|++|++++|.+++. ++..+..+++|++|++++|.+++. ++..+...++|++|++++|.+++.
T Consensus 130 ~~l-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 208 (319)
T cd00116 130 KGL-KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE 208 (319)
T ss_pred HHH-HhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH
Confidence 233 455 8999999999999843 344566778999999999998852 334455667999999999998754
Q ss_pred ----ccccccCCCCCCEEeccCCcccccchhhhh-----CCCCCCEEEcccC
Q 023644 210 ----IPREFGNLAELERMSLATNKLQGMIINFLQ-----FDSSLCLLLYSFV 252 (279)
Q Consensus 210 ----~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n 252 (279)
++..+..+++|++|++++|.+++.....+. ..++|++|++++|
T Consensus 209 ~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 209 GASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence 345567789999999999999874443333 2479999999986
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.52 E-value=5.4e-14 Score=132.76 Aligned_cols=159 Identities=25% Similarity=0.390 Sum_probs=87.8
Q ss_pred cEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEe
Q 023644 74 RVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSL 153 (279)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l 153 (279)
+++.|++++|.+. .+|..+. .+|+.|++++|.++ .+|..+. .+|+.|++++|.+. .+|..+. .+|++|++
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~L 269 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP---SALQSLDL 269 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh---CCCCEEEC
Confidence 4556666666665 3443332 36666666666665 3454432 35666666666666 6665542 35667777
Q ss_pred ecccCCCCChhhhhcCCcCceeeccCccCCCCCccccc-------------------CCCCcceeecccccccccccccc
Q 023644 154 SQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIG-------------------NLTKLKLLYIGVNRLQGEIPREF 214 (279)
Q Consensus 154 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~-------------------~l~~L~~L~l~~n~l~~~~p~~l 214 (279)
++|.++ .+|..+. .+|++|++++|++++ +|..+. -.++|+.|++++|.++ .+|..+
T Consensus 270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt-~LP~~l 344 (754)
T PRK15370 270 FHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT-SLPASL 344 (754)
T ss_pred cCCccC-ccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCccc-cCChhh
Confidence 777666 4555443 366677777666653 333221 0134455555555554 234333
Q ss_pred cCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 215 GNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 215 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
. ++|+.|++++|+++. +|..+ .++|+.|++++|
T Consensus 345 ~--~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N 377 (754)
T PRK15370 345 P--PELQVLDVSKNQITV-LPETL--PPTITTLDVSRN 377 (754)
T ss_pred c--CcccEEECCCCCCCc-CChhh--cCCcCEEECCCC
Confidence 2 466777777776663 44433 246777777765
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.51 E-value=1.9e-13 Score=136.22 Aligned_cols=176 Identities=20% Similarity=0.201 Sum_probs=102.8
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
..+++.|++.++.+. .++..+..+++|+.++++++...+.+|. +..+++|+.|++++|.....+|..+ ..+++|++|
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si-~~L~~L~~L 686 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSI-QYLNKLEDL 686 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhh-hccCCCCEE
Confidence 356777777777766 4566666777777777776654345553 5666777777777665444666665 667777777
Q ss_pred EeecccCCCCChhhhhcCCcCceeeccCccCCCC--------------------Ccccc---------------------
Q 023644 152 SLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGA--------------------IPKEI--------------------- 190 (279)
Q Consensus 152 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~--------------------~p~~l--------------------- 190 (279)
++++|.....+|..+ .+++|++|++++|..... +|..+
T Consensus 687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWER 765 (1153)
T ss_pred eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcccc
Confidence 777654333555443 455555555555432222 22211
Q ss_pred ---------cCCCCcceeecccccccccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 191 ---------GNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 191 ---------~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
...++|+.|++++|...+.+|..++++++|+.|++++|..-+.+|..+ .+++|+.|+++++
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c 835 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGC 835 (1153)
T ss_pred ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCC
Confidence 011345566666665555666666677777777776664333455443 4566666666553
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=1e-13 Score=130.84 Aligned_cols=160 Identities=24% Similarity=0.392 Sum_probs=108.2
Q ss_pred CcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEE
Q 023644 73 HRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLS 152 (279)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~ 152 (279)
.+++.|++++|.+. .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|++++|.++ .+|..+ ..+|++|+
T Consensus 220 ~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l---~~sL~~L~ 289 (754)
T PRK15370 220 GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENL---PEELRYLS 289 (754)
T ss_pred cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-cccccc---CCCCcEEE
Confidence 46778888888877 4454433 35677777777766 4555443 35666666666666 566544 13566666
Q ss_pred eecccCCCCChhhhh-------------------cCCcCceeeccCccCCCCCcccccCCCCcceeeccccccccccccc
Q 023644 153 LSQNMLHGGIPSTLS-------------------NCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPRE 213 (279)
Q Consensus 153 l~~n~l~~~~p~~~~-------------------~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~ 213 (279)
+++|.++ .+|..+. ..++|++|++++|.+++ +|..+. ++|+.|++++|+++ .+|..
T Consensus 290 Ls~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~ 364 (754)
T PRK15370 290 VYDNSIR-TLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPET 364 (754)
T ss_pred CCCCccc-cCcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChh
Confidence 6666665 2232111 12468888888888874 666553 68999999999998 67766
Q ss_pred ccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 214 FGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 214 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
+. ++|+.|++++|.++. +|..+. .+|+.|++++|
T Consensus 365 lp--~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N 398 (754)
T PRK15370 365 LP--PTITTLDVSRNALTN-LPENLP--AALQIMQASRN 398 (754)
T ss_pred hc--CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccC
Confidence 63 689999999999995 454443 36888999887
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.46 E-value=9.3e-15 Score=135.30 Aligned_cols=149 Identities=30% Similarity=0.313 Sum_probs=98.4
Q ss_pred CCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeec
Q 023644 98 SLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSL 177 (279)
Q Consensus 98 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 177 (279)
.|+.|++.+|.++...-+.+.++++|+.|+|++|++. ++|+..+.++..|++|++++|.++ .+|..+..+..|++|..
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence 4566666777777666566677777778888887776 777777777777777778887777 67777777777777777
Q ss_pred cCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcc
Q 023644 178 PYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYS 250 (279)
Q Consensus 178 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 250 (279)
..|.+. .+| ++.+++.|+.+|++.|.++...-......++|++||+++|.-.-.--+.+..+.++...+++
T Consensus 438 hsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~ 508 (1081)
T KOG0618|consen 438 HSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDIT 508 (1081)
T ss_pred cCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecc
Confidence 777766 566 67777777777777777764332222223777777777775321112233344444444443
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.46 E-value=3.2e-13 Score=127.23 Aligned_cols=166 Identities=27% Similarity=0.254 Sum_probs=92.5
Q ss_pred CCcEEEEEeCCCCCCccCCccCCC-----------------CCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCc
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGN-----------------LSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLS 134 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~-----------------l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 134 (279)
.++++.|++++|++.. +|..... ...|+.|++++|+++ .+|.. +++|+.|++++|.++
T Consensus 241 p~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 241 PPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA 315 (788)
T ss_pred CCCCcEEEecCCccCc-ccCcccccceeeccCCchhhhhhchhhcCEEECcCCccc-ccccc---ccccceeECCCCccc
Confidence 4677777777777763 2321111 123444555555554 23321 244555555555555
Q ss_pred ccCchHH----------------hhCCCCCcEEEeecccCCCCChhhhhc-----------------CCcCceeeccCcc
Q 023644 135 GQIPANI----------------CSYLPFLEVLSLSQNMLHGGIPSTLSN-----------------CTYLRILSLPYNN 181 (279)
Q Consensus 135 ~~lp~~~----------------~~~l~~L~~L~l~~n~l~~~~p~~~~~-----------------l~~L~~L~l~~n~ 181 (279)
.+|... .....+|++|++++|+++ .+|..... ..+|+.|++++|.
T Consensus 316 -~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~ 393 (788)
T PRK15387 316 -SLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNR 393 (788)
T ss_pred -cCCCCcccccccccccCccccccccccccceEecCCCccC-CCCCCCcccceehhhccccccCcccccccceEEecCCc
Confidence 333210 000135666777777666 33321110 1245666666666
Q ss_pred CCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccCc
Q 023644 182 FLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFVC 253 (279)
Q Consensus 182 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 253 (279)
++ .+|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|.
T Consensus 394 Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 394 LT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred cc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCC
Confidence 65 34432 245667777777776 35543 245677888888887 567788888999999998883
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.43 E-value=5.2e-15 Score=136.96 Aligned_cols=178 Identities=27% Similarity=0.390 Sum_probs=109.3
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCccc-----------------------ccccCCCCCCEEEc
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIP-----------------------SAIFTIYTLKNVSL 128 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-----------------------~~l~~l~~L~~L~l 128 (279)
+.+++.+|++.+++.+ +|.-+..+.+|+.++..+|.++ .+| ....++++|++|+|
T Consensus 240 p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred cccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeee
Confidence 5567788888887773 4566667777777777776664 333 33445667777777
Q ss_pred cCCcCcccCchHHhhC-------------------------CCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCC
Q 023644 129 HKNQLSGQIPANICSY-------------------------LPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFL 183 (279)
Q Consensus 129 ~~n~l~~~lp~~~~~~-------------------------l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 183 (279)
..|++. .+|+.++.. ++.|+.|++.+|.++...-+.+.+..+|+.|+|++|++.
T Consensus 318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 777775 666543321 122344444455554444444555666667777766655
Q ss_pred CCCcccccCCCCcceeecccccccc----------------------cccccccCCCCCCEEeccCCcccccc-hhhhhC
Q 023644 184 GAIPKEIGNLTKLKLLYIGVNRLQG----------------------EIPREFGNLAELERMSLATNKLQGMI-INFLQF 240 (279)
Q Consensus 184 ~~~p~~l~~l~~L~~L~l~~n~l~~----------------------~~p~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~ 240 (279)
......+.++..|++|+||+|+++. ..| .+.+++.|+.+|++.|+++... |+...
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p- 474 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP- 474 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCC-
Confidence 2222334566666666666666652 244 5667788888898888887543 33332
Q ss_pred CCCCCEEEcccCcc
Q 023644 241 DSSLCLLLYSFVCS 254 (279)
Q Consensus 241 l~~L~~L~l~~n~~ 254 (279)
-++|++||+++|..
T Consensus 475 ~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNTR 488 (1081)
T ss_pred CcccceeeccCCcc
Confidence 37899999999853
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.42 E-value=5.7e-13 Score=125.52 Aligned_cols=85 Identities=24% Similarity=0.259 Sum_probs=71.5
Q ss_pred CCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEec
Q 023644 146 PFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSL 225 (279)
Q Consensus 146 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 225 (279)
.+|+.|++++|.++ .+|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|..+.++++|+.+++
T Consensus 382 ~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 382 SGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 452 (788)
T ss_pred cccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence 46888999999887 45643 357999999999998 46754 346889999999998 88999999999999999
Q ss_pred cCCcccccchhhhh
Q 023644 226 ATNKLQGMIINFLQ 239 (279)
Q Consensus 226 ~~n~l~~~~~~~l~ 239 (279)
++|++++..+..+.
T Consensus 453 s~N~Ls~~~~~~L~ 466 (788)
T PRK15387 453 EGNPLSERTLQALR 466 (788)
T ss_pred CCCCCCchHHHHHH
Confidence 99999998887664
No 23
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.39 E-value=5.3e-13 Score=118.90 Aligned_cols=171 Identities=32% Similarity=0.461 Sum_probs=142.7
Q ss_pred CcEEEEEeCCCCCCccCCccCCCCC-CCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 73 HRVTVLNISSLNLTGPIPAQLGNLS-SLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
..++.+++.++.+. .+++....+. +|+.|++++|.+. .+|..+..++.|+.|++++|+++ .+|... ...+.|+.|
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~-~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLL-SNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhh-hhhhhhhhe
Confidence 45888999999988 5666677774 9999999999988 66677888999999999999998 888765 578899999
Q ss_pred EeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCccc
Q 023644 152 SLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQ 231 (279)
Q Consensus 152 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 231 (279)
++++|.+. .+|.......+|+++.+++|... ..+..+.++.++..+.+.+|++. .++..+..++++++|++++|.++
T Consensus 192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 192 DLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred eccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc
Confidence 99999998 77877667777999999999644 45667778888888888999887 44778888999999999999988
Q ss_pred ccchhhhhCCCCCCEEEcccC
Q 023644 232 GMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 232 ~~~~~~l~~l~~L~~L~l~~n 252 (279)
...+ ++.+.+++.|++++|
T Consensus 269 ~i~~--~~~~~~l~~L~~s~n 287 (394)
T COG4886 269 SISS--LGSLTNLRELDLSGN 287 (394)
T ss_pred cccc--ccccCccCEEeccCc
Confidence 5544 888999999999987
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.38 E-value=1.1e-14 Score=128.48 Aligned_cols=146 Identities=32% Similarity=0.504 Sum_probs=108.6
Q ss_pred EEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeeccc
Q 023644 78 LNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNM 157 (279)
Q Consensus 78 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~ 157 (279)
+.+..|.+. .+|..++++..|++++++.|++. .+|..+..++ |+.|-+++|+++ .+|+.+ +....|..|+.+.|.
T Consensus 103 liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~i-g~~~tl~~ld~s~ne 177 (722)
T KOG0532|consen 103 LILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEI-GLLPTLAHLDVSKNE 177 (722)
T ss_pred HHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCccc-ccchhHHHhhhhhhh
Confidence 344444444 46667777777888888888776 5666665553 777888888887 778777 577778888888887
Q ss_pred CCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcccc
Q 023644 158 LHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQG 232 (279)
Q Consensus 158 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 232 (279)
+. .+|..++++.+|+.+.+..|++. .+|.++..++ |..||++.|+++ .+|-.|.++..|++|-|.+|.++.
T Consensus 178 i~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 178 IQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence 76 67777888888888888888777 5666776555 777888888887 788888888888888888888874
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.38 E-value=1.1e-14 Score=128.60 Aligned_cols=170 Identities=27% Similarity=0.374 Sum_probs=151.8
Q ss_pred cEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEe
Q 023644 74 RVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSL 153 (279)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l 153 (279)
..+..|++.|.+. .+|..+..+..|+.+.+..|.+. .+|.++..+..|.+++++.|+++ .+|..+ . .--|+.|.+
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~l-C-~lpLkvli~ 150 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGL-C-DLPLKVLIV 150 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhh-h-cCcceeEEE
Confidence 4567888999888 67888888899999999999998 78999999999999999999998 999988 3 445999999
Q ss_pred ecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCccccc
Q 023644 154 SQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGM 233 (279)
Q Consensus 154 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 233 (279)
++|+++ .+|+.++.+.+|..++.+.|.+. .+|..++.+.+|+.|.+..|++. .+|+.+..+ .|..||++.|++. .
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-Y 225 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-e
Confidence 999998 88999999999999999999988 78899999999999999999998 677777754 5889999999998 5
Q ss_pred chhhhhCCCCCCEEEcccCc
Q 023644 234 IINFLQFDSSLCLLLYSFVC 253 (279)
Q Consensus 234 ~~~~l~~l~~L~~L~l~~n~ 253 (279)
+|-.|.+|++|++|-|++|+
T Consensus 226 iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred cchhhhhhhhheeeeeccCC
Confidence 78899999999999999995
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.37 E-value=1.3e-12 Score=122.33 Aligned_cols=107 Identities=28% Similarity=0.439 Sum_probs=95.4
Q ss_pred CCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEecc
Q 023644 147 FLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLA 226 (279)
Q Consensus 147 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 226 (279)
.++.|++++|.++|.+|..++.+++|+.|++++|.+.|.+|..++.+++|+.|++++|.++|.+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccchhhhhCC-CCCCEEEcccCc
Q 023644 227 TNKLQGMIINFLQFD-SSLCLLLYSFVC 253 (279)
Q Consensus 227 ~n~l~~~~~~~l~~l-~~L~~L~l~~n~ 253 (279)
+|.++|.+|..++.. .++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 999999999888753 467788888874
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.29 E-value=4e-13 Score=114.14 Aligned_cols=98 Identities=27% Similarity=0.276 Sum_probs=71.5
Q ss_pred eCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeec-ccC
Q 023644 80 ISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQ-NML 158 (279)
Q Consensus 80 l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~-n~l 158 (279)
-++-++. .+|..+. +....++|..|+|+...|.+|+.+++|+.|||++|+|+ .|.+..|.++..+..|.+-+ |+|
T Consensus 53 Cr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 53 CRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred ccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCch
Confidence 3344455 3454443 46788999999999777889999999999999999999 78777789999887776655 899
Q ss_pred CCCChhhhhcCCcCceeeccCcc
Q 023644 159 HGGIPSTLSNCTYLRILSLPYNN 181 (279)
Q Consensus 159 ~~~~p~~~~~l~~L~~L~l~~n~ 181 (279)
+..-...|.++.+++.|.+.-|+
T Consensus 129 ~~l~k~~F~gL~slqrLllNan~ 151 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNANH 151 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcChhh
Confidence 84444456666555555444443
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.20 E-value=1.2e-11 Score=110.15 Aligned_cols=155 Identities=33% Similarity=0.522 Sum_probs=133.4
Q ss_pred cEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEe
Q 023644 74 RVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSL 153 (279)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l 153 (279)
+++.|++++|.+. .+|..+..+++|+.|++++|++. .+|......+.|+.|++++|.++ .+|..+ .....|+++.+
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~-~~~~~L~~l~~ 216 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEI-ELLSALEELDL 216 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhh-hhhhhhhhhhh
Confidence 7999999999998 55667899999999999999998 67776668899999999999998 999876 55677999999
Q ss_pred ecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCccccc
Q 023644 154 SQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGM 233 (279)
Q Consensus 154 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 233 (279)
++|.+. ..+..+..+.++..+.+.+|.+. .++..++.+++++.|++++|.++ .++. ++.+.+++.+++++|.+...
T Consensus 217 ~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 217 SNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCcccccc
Confidence 999654 66778889999999999999876 44677888999999999999998 5554 89999999999999988766
Q ss_pred chh
Q 023644 234 IIN 236 (279)
Q Consensus 234 ~~~ 236 (279)
.+.
T Consensus 293 ~~~ 295 (394)
T COG4886 293 LPL 295 (394)
T ss_pred chh
Confidence 554
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.20 E-value=1.4e-11 Score=96.31 Aligned_cols=126 Identities=27% Similarity=0.275 Sum_probs=31.9
Q ss_pred CCCCCEEECCCCcCCCccccccc-CCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhh-hcCCcCc
Q 023644 96 LSSLQSLNLSCNRLSGSIPSAIF-TIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTL-SNCTYLR 173 (279)
Q Consensus 96 l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~ 173 (279)
...+++|++.+|.++. + +.+. .+.+|+.|++++|.++ .++. + ..++.|++|++++|.++ .+.+.+ ..+++|+
T Consensus 18 ~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~~-l-~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLEG-L-PGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ 91 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-cccC-c-cChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence 3345556666665552 2 2232 3455555555555555 4432 2 34455555555555554 222222 2344455
Q ss_pred eeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcccccc---hhhhhCCCCCCEEEcc
Q 023644 174 ILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMI---INFLQFDSSLCLLLYS 250 (279)
Q Consensus 174 ~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L~l~ 250 (279)
+|++++|++...- --..+..+++|+.|++.+|+++... ...+..+|+|+.||-.
T Consensus 92 ~L~L~~N~I~~l~-----------------------~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 92 ELYLSNNKISDLN-----------------------ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EEE-TTS---SCC-----------------------CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred EEECcCCcCCChH-----------------------HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 5555555443210 0123344555555555555554321 1234466666666653
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=4.2e-11 Score=93.62 Aligned_cols=124 Identities=30% Similarity=0.337 Sum_probs=51.1
Q ss_pred CcEEEEEeCCCCCCccCCccCC-CCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 73 HRVTVLNISSLNLTGPIPAQLG-NLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
.+++.|+|.+|.|.. +. .++ .+.+|+.|++++|.++. + +.+..+++|+.|++++|.++ .+++.+...+++|++|
T Consensus 19 ~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccc-cc-chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 357899999999984 33 355 58899999999999983 3 35778999999999999998 7876654568999999
Q ss_pred EeecccCCCC-ChhhhhcCCcCceeeccCccCCCCC---cccccCCCCcceeec
Q 023644 152 SLSQNMLHGG-IPSTLSNCTYLRILSLPYNNFLGAI---PKEIGNLTKLKLLYI 201 (279)
Q Consensus 152 ~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~---p~~l~~l~~L~~L~l 201 (279)
++++|.+... .-..+..+++|+.|++.+|.++... ...+..+|+|+.||-
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 9999999632 1245677889999999999887431 122345677777763
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=2.3e-11 Score=100.47 Aligned_cols=130 Identities=22% Similarity=0.225 Sum_probs=103.6
Q ss_pred ccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCc
Q 023644 117 IFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKL 196 (279)
Q Consensus 117 l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 196 (279)
+.....|+.+|+++|.++ .+.++. .-.+.++.|++++|.+. .+ .++..+++|+.||+++|.++ .+..+-..+-+.
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESv-KL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESV-KLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI 354 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhh-hhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence 334567899999999998 888887 78899999999999986 33 34888999999999999887 333444467788
Q ss_pred ceeecccccccccccccccCCCCCCEEeccCCccccc-chhhhhCCCCCCEEEcccCc
Q 023644 197 KLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGM-IINFLQFDSSLCLLLYSFVC 253 (279)
Q Consensus 197 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~ 253 (279)
++|.|++|.+.. -+.++++-+|..||+++|++... -...++++|.|+++.+..|+
T Consensus 355 KtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 355 KTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred eeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 999999998852 24577788899999999998753 34578899999999998885
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=6.4e-11 Score=102.06 Aligned_cols=179 Identities=26% Similarity=0.252 Sum_probs=81.5
Q ss_pred CcEEEEEeCCCCCCcc--CCccCCCCCCCCEEECCCCcCCCcccccc-cCCCCCCEEEccCCcCcccCchHHhhCCCCCc
Q 023644 73 HRVTVLNISSLNLTGP--IPAQLGNLSSLQSLNLSCNRLSGSIPSAI-FTIYTLKNVSLHKNQLSGQIPANICSYLPFLE 149 (279)
Q Consensus 73 ~~l~~L~l~~~~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~ 149 (279)
.+++.|||+.|-+... +..-...+++|+.|+++.|.+.-...... ..+++|+.|.++.|.++..--..+...+++|+
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~ 225 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE 225 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence 3455555555544421 11222345556666666555431111111 23455566666666555211112223455666
Q ss_pred EEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCc--ccccCCCCcceeeccccccccc-cccc-----ccCCCCCC
Q 023644 150 VLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIP--KEIGNLTKLKLLYIGVNRLQGE-IPRE-----FGNLAELE 221 (279)
Q Consensus 150 ~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~l~~l~~L~~L~l~~n~l~~~-~p~~-----l~~l~~L~ 221 (279)
.|++..|...+........++.|+.|+|++|++.. .+ ...+.++.|..|+++.+++... +|+. ....++|+
T Consensus 226 ~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~ 304 (505)
T KOG3207|consen 226 VLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLE 304 (505)
T ss_pred HhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhcccccce
Confidence 66666653221222223344555666666665542 22 2334555555566665555421 1221 23345566
Q ss_pred EEeccCCcccccc-hhhhhCCCCCCEEEcccC
Q 023644 222 RMSLATNKLQGMI-INFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 222 ~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n 252 (279)
+|+++.|++.... -..+..+++|+.|.+..|
T Consensus 305 ~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 305 YLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred eeecccCccccccccchhhccchhhhhhcccc
Confidence 6666666653221 123334455555554444
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=5.9e-11 Score=98.03 Aligned_cols=135 Identities=24% Similarity=0.310 Sum_probs=83.0
Q ss_pred cCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCc
Q 023644 92 QLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTY 171 (279)
Q Consensus 92 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 171 (279)
.+.....|+.+|+++|.++ .+..+..-.+.++.|++++|.+. .+.. + ..+++|+.|++++|.++ .+...--.+.+
T Consensus 279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-L-a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN 353 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-L-AELPQLQLLDLSGNLLA-ECVGWHLKLGN 353 (490)
T ss_pred ecchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-h-hhcccceEeecccchhH-hhhhhHhhhcC
Confidence 3444566777777777766 45555666677777777777776 4443 3 56677777777777665 33333335666
Q ss_pred CceeeccCccCCCCCcccccCCCCcceeeccccccccc-ccccccCCCCCCEEeccCCccccc
Q 023644 172 LRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGE-IPREFGNLAELERMSLATNKLQGM 233 (279)
Q Consensus 172 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~ 233 (279)
.++|.++.|.+... ..++.+-+|..||+++|+|... --..+++++-|+++.+.+|++.+.
T Consensus 354 IKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 354 IKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred EeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 67777777765421 3345556677777777766521 123466777777777777777654
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=7.3e-11 Score=101.70 Aligned_cols=181 Identities=19% Similarity=0.165 Sum_probs=130.0
Q ss_pred CCcEEEEEeCCCCCCccCC--ccCCCCCCCCEEECCCCcCCCc--ccccccCCCCCCEEEccCCcCcccCchHHhhCCCC
Q 023644 72 SHRVTVLNISSLNLTGPIP--AQLGNLSSLQSLNLSCNRLSGS--IPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPF 147 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~ 147 (279)
-.+++.+.|.+..... .+ .....+++++.|+++.|-+... +......+++|+.|+++.|.+.-......-..+++
T Consensus 120 ~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 3457777887777652 22 3566799999999999977633 33445789999999999999963222222245789
Q ss_pred CcEEEeecccCCCC-ChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccc-cccccCCCCCCEEec
Q 023644 148 LEVLSLSQNMLHGG-IPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEI-PREFGNLAELERMSL 225 (279)
Q Consensus 148 L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~l 225 (279)
|..|.++.|.++-. +-.....+++|+.|++..|...........-+..|++|||++|++-..- -...+.++.|+.|.+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 99999999998722 2233447799999999999533232333345678999999999887332 145778999999999
Q ss_pred cCCccccc-chhh-----hhCCCCCCEEEcccCc
Q 023644 226 ATNKLQGM-IINF-----LQFDSSLCLLLYSFVC 253 (279)
Q Consensus 226 ~~n~l~~~-~~~~-----l~~l~~L~~L~l~~n~ 253 (279)
+.+.+... .|+. ...+++|++|++..|.
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 99987753 2332 3478999999999983
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=7.4e-10 Score=71.45 Aligned_cols=58 Identities=28% Similarity=0.300 Sum_probs=29.1
Q ss_pred CcceeecccccccccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 195 KLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 195 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
+|++|++++|.++...+..|.++++|++|++++|.++...+..|..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3445555555555333344455555555555555555444445555555555555544
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.92 E-value=4.9e-10 Score=94.19 Aligned_cols=180 Identities=22% Similarity=0.208 Sum_probs=134.2
Q ss_pred CcEEEEEeCCCCCCccCCc----cCCCCCCCCEEECCCCcCCCcc-------------cccccCCCCCCEEEccCCcCcc
Q 023644 73 HRVTVLNISSLNLTGPIPA----QLGNLSSLQSLNLSCNRLSGSI-------------PSAIFTIYTLKNVSLHKNQLSG 135 (279)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~-------------p~~l~~l~~L~~L~l~~n~l~~ 135 (279)
++++.+|||.|.+...-+. .+.....|++|.+.+|.+...- ......-+.|+++...+|++.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle- 170 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE- 170 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-
Confidence 3799999999998744332 3456788999999999875211 112334578999999999997
Q ss_pred cCc----hHHhhCCCCCcEEEeecccCCCC----ChhhhhcCCcCceeeccCccCCCC----CcccccCCCCcceeeccc
Q 023644 136 QIP----ANICSYLPFLEVLSLSQNMLHGG----IPSTLSNCTYLRILSLPYNNFLGA----IPKEIGNLTKLKLLYIGV 203 (279)
Q Consensus 136 ~lp----~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~ 203 (279)
.-+ ...|...+.|+.+.+..|.|... +...+.++++|+.||+.+|.|+.. +...+..++.|++|++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 443 23457789999999999988522 334567899999999999998743 345566788999999999
Q ss_pred ccccccccccc-----cCCCCCCEEeccCCccccc----chhhhhCCCCCCEEEcccCc
Q 023644 204 NRLQGEIPREF-----GNLAELERMSLATNKLQGM----IINFLQFDSSLCLLLYSFVC 253 (279)
Q Consensus 204 n~l~~~~p~~l-----~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~ 253 (279)
|.+....-..+ ...++|+.+.+.+|.++.. +...+...+.|..|++++|.
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 99875433222 2468999999999998753 34456678999999999984
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.89 E-value=1.5e-09 Score=70.06 Aligned_cols=61 Identities=31% Similarity=0.446 Sum_probs=55.8
Q ss_pred CcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcc
Q 023644 170 TYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKL 230 (279)
Q Consensus 170 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l 230 (279)
++|++|++++|+++...+..|..+++|++|++++|.+++..|..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999999966667889999999999999999978788999999999999999975
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.68 E-value=1.6e-08 Score=85.26 Aligned_cols=159 Identities=18% Similarity=0.162 Sum_probs=104.6
Q ss_pred CCCCCCCCEEECCCCcCCCccccc----ccCCCCCCEEEccCCcCcccCchHH-------------hhCCCCCcEEEeec
Q 023644 93 LGNLSSLQSLNLSCNRLSGSIPSA----IFTIYTLKNVSLHKNQLSGQIPANI-------------CSYLPFLEVLSLSQ 155 (279)
Q Consensus 93 ~~~l~~L~~L~l~~n~l~~~~p~~----l~~l~~L~~L~l~~n~l~~~lp~~~-------------~~~l~~L~~L~l~~ 155 (279)
+...++|++++||+|.+...-+.. +.+...|++|.|.+|.+. ...... ...-+.|+++...+
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 344567888888888776433333 345677888888888775 222111 13456788888888
Q ss_pred ccCCCC----ChhhhhcCCcCceeeccCccCCCCC----cccccCCCCcceeeccccccccc----ccccccCCCCCCEE
Q 023644 156 NMLHGG----IPSTLSNCTYLRILSLPYNNFLGAI----PKEIGNLTKLKLLYIGVNRLQGE----IPREFGNLAELERM 223 (279)
Q Consensus 156 n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~----p~~l~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L 223 (279)
|++... +...+...+.|+.+.+..|.+.... -..+..++.|+.||+.+|-++.. +...+..+++|+.+
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 877532 2234556678888888888764321 23456778888888888887632 33456677888888
Q ss_pred eccCCcccccchhhhh-----CCCCCCEEEcccC
Q 023644 224 SLATNKLQGMIINFLQ-----FDSSLCLLLYSFV 252 (279)
Q Consensus 224 ~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n 252 (279)
++++|.+.......+. ..++|+.|.+.+|
T Consensus 247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGN 280 (382)
T ss_pred cccccccccccHHHHHHHHhccCCCCceeccCcc
Confidence 8888888765444332 5778888888887
No 39
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.64 E-value=1.5e-09 Score=79.84 Aligned_cols=84 Identities=30% Similarity=0.447 Sum_probs=42.8
Q ss_pred CCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceee
Q 023644 121 YTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLY 200 (279)
Q Consensus 121 ~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 200 (279)
.+|...++++|.+. .+|+.+-..++.++++++.+|.+. .+|..++.++.|+.++++.|.+. ..|..+..+.++..|+
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 34444455555554 455544344445555555555554 44555555555555555555544 3444444455555555
Q ss_pred ccccccc
Q 023644 201 IGVNRLQ 207 (279)
Q Consensus 201 l~~n~l~ 207 (279)
..+|.+.
T Consensus 130 s~~na~~ 136 (177)
T KOG4579|consen 130 SPENARA 136 (177)
T ss_pred CCCCccc
Confidence 5555544
No 40
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.61 E-value=6.5e-08 Score=57.46 Aligned_cols=40 Identities=48% Similarity=0.987 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHhcCCCCCCccCCCCCCC--CCCCCccceEec
Q 023644 29 TTDRDALLALKAHITHDPTNFFAKNWNTS--ICFCNWTGVTCD 69 (279)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~~~~~~~w~~~--~~~c~w~gv~c~ 69 (279)
+.|+++|++||+++..++...+.. |... .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~-W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSS-WNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT---TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCccccc-CCCcCCCCCeeeccEEeC
Confidence 578999999999997677667776 9987 799999999995
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.57 E-value=6.4e-08 Score=93.49 Aligned_cols=127 Identities=28% Similarity=0.409 Sum_probs=62.2
Q ss_pred CCCCEEECCCCcCCCcccccccCCCCCCEEEccCCc--CcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCce
Q 023644 97 SSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQ--LSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRI 174 (279)
Q Consensus 97 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~--l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 174 (279)
...+.+.+.+|.+. .++... ..+.|+.|-+..|. +. .++..+|..++.|++||+++|.-.+.+|..++.+-+||+
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 34444555444443 222221 12245555555553 32 444444455555555555555444455555555555555
Q ss_pred eeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccC
Q 023644 175 LSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLAT 227 (279)
Q Consensus 175 L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 227 (279)
|++++..+. .+|..++++..|.+|++..+.....+|.....+++|++|.+-.
T Consensus 600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 555555554 4555555555555555555444334444444455555555433
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.57 E-value=1.6e-09 Score=99.01 Aligned_cols=125 Identities=30% Similarity=0.292 Sum_probs=84.3
Q ss_pred CCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeec
Q 023644 122 TLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYI 201 (279)
Q Consensus 122 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 201 (279)
.|...+.+.|.+. .+.+.+ .-++.++.|++++|+++ .. +.+..+++|++||++.|.++ .+|..-..-..|+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SL-qll~ale~LnLshNk~~-~v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESL-QLLPALESLNLSHNKFT-KV-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHH-HHHHHhhhhccchhhhh-hh-HHHHhcccccccccccchhc-cccccchhhhhheeeee
Confidence 3555666777776 555555 66778888888888876 32 36777888888888888877 44432111234888888
Q ss_pred ccccccccccccccCCCCCCEEeccCCcccccc-hhhhhCCCCCCEEEcccCc
Q 023644 202 GVNRLQGEIPREFGNLAELERMSLATNKLQGMI-INFLQFDSSLCLLLYSFVC 253 (279)
Q Consensus 202 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~ 253 (279)
.+|.++.. ..+.++.+|+.||+++|.+.+.- -..+..+..|+.|++.+|+
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 88887622 35677788888888888776532 2345567778888888884
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.47 E-value=1.6e-07 Score=90.78 Aligned_cols=103 Identities=27% Similarity=0.309 Sum_probs=53.0
Q ss_pred CCCEEECCCCc--CCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCcee
Q 023644 98 SLQSLNLSCNR--LSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRIL 175 (279)
Q Consensus 98 ~L~~L~l~~n~--l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 175 (279)
.|+.|-+.+|. +....+..|..++.|++||+++|.--+.+|+.+ +.+-+|++|+++++.+. .+|..+.+++.|.+|
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 45555555553 221222224445555555555554444555555 55555555555555555 555555555555555
Q ss_pred eccCccCCCCCcccccCCCCcceeecc
Q 023644 176 SLPYNNFLGAIPKEIGNLTKLKLLYIG 202 (279)
Q Consensus 176 ~l~~n~l~~~~p~~l~~l~~L~~L~l~ 202 (279)
++..+.....+|.....+.+|++|.+.
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred ccccccccccccchhhhcccccEEEee
Confidence 555544433444444445555555554
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.47 E-value=1.6e-08 Score=92.64 Aligned_cols=153 Identities=25% Similarity=0.244 Sum_probs=106.4
Q ss_pred CccCCCCCCCCEEECCCCcCCCcccccccCC-CCCCEEEccCCcCc----------ccCchHHhhCCCCCcEEEeecccC
Q 023644 90 PAQLGNLSSLQSLNLSCNRLSGSIPSAIFTI-YTLKNVSLHKNQLS----------GQIPANICSYLPFLEVLSLSQNML 158 (279)
Q Consensus 90 ~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l-~~L~~L~l~~n~l~----------~~lp~~~~~~l~~L~~L~l~~n~l 158 (279)
|-.+..+..|++|.+.++.+.. ...+..+ ..|++|- -.|.+. |.+-... .+..|.+.+++.|.+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L 176 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRL 176 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhh-hhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhH
Confidence 4456678888888888887652 1222221 1233332 223222 1111111 245788888999988
Q ss_pred CCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcccccchhhh
Q 023644 159 HGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFL 238 (279)
Q Consensus 159 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l 238 (279)
. .+..++.-++.++.|+|++|+++.. +.+..++.|++||++.|.++ .+|..-..-..|+.|.+++|.++.. ..+
T Consensus 177 ~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gi 250 (1096)
T KOG1859|consen 177 V-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGI 250 (1096)
T ss_pred H-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhH
Confidence 7 6677788889999999999999854 37888999999999999998 5664322223499999999998754 246
Q ss_pred hCCCCCCEEEcccCc
Q 023644 239 QFDSSLCLLLYSFVC 253 (279)
Q Consensus 239 ~~l~~L~~L~l~~n~ 253 (279)
.++.+|+.||++||+
T Consensus 251 e~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNL 265 (1096)
T ss_pred HhhhhhhccchhHhh
Confidence 789999999999996
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.39 E-value=1.8e-08 Score=90.42 Aligned_cols=170 Identities=25% Similarity=0.327 Sum_probs=91.7
Q ss_pred EEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEee
Q 023644 75 VTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLS 154 (279)
Q Consensus 75 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~ 154 (279)
+..+++..|.+.. +-..+..+.+++.+++.+|.+.+ +...+..+++|++|++++|.++ .+... ..++.|+.|++.
T Consensus 74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~~l--~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLEGL--STLTLLKELNLS 148 (414)
T ss_pred HHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccc-cccch--hhccchhhheec
Confidence 3344444554442 22335556667777777776663 2222555667777777777776 44321 345557777777
Q ss_pred cccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeeccccccccccc--------------------ccc
Q 023644 155 QNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIP--------------------REF 214 (279)
Q Consensus 155 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p--------------------~~l 214 (279)
+|.+. .+ ..+..++.|+.+++++|.+...-+.....+.+++.+++.+|.+...-. ..+
T Consensus 149 ~N~i~-~~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l 226 (414)
T KOG0531|consen 149 GNLIS-DI-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGL 226 (414)
T ss_pred cCcch-hc-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCc
Confidence 77665 22 234446666777777776663322003455666666666666542110 011
Q ss_pred cCCCC--CCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 215 GNLAE--LERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 215 ~~l~~--L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
..+.. |+.+++++|.+... +..+..+.++..|++..|
T Consensus 227 ~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 227 NELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSN 265 (414)
T ss_pred ccchhHHHHHHhcccCccccc-cccccccccccccchhhc
Confidence 11122 66777777776532 234455666777777655
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.33 E-value=8e-08 Score=86.26 Aligned_cols=171 Identities=26% Similarity=0.281 Sum_probs=119.7
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
...++.+++.+|.+... ...+..+.+|++|++++|.|+.. ..+..++.|+.|++.+|.++ .+... ..+..|+.+
T Consensus 94 ~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~-~~~~~--~~l~~L~~l 167 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLIS-DISGL--ESLKSLKLL 167 (414)
T ss_pred ccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhheeccCcch-hccCC--ccchhhhcc
Confidence 46789999999999843 33377789999999999999843 34566777999999999997 55432 458899999
Q ss_pred EeecccCCCCChhh-hhcCCcCceeeccCccCCCCC-------------c-cccc------CCCC--cceeecccccccc
Q 023644 152 SLSQNMLHGGIPST-LSNCTYLRILSLPYNNFLGAI-------------P-KEIG------NLTK--LKLLYIGVNRLQG 208 (279)
Q Consensus 152 ~l~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~-------------p-~~l~------~l~~--L~~L~l~~n~l~~ 208 (279)
++++|.+...-+ . ...+.+++.+++.+|.+...- + ..+. .+.. |+.+++++|++.
T Consensus 168 ~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~- 245 (414)
T KOG0531|consen 168 DLSYNRIVDIEN-DELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRIS- 245 (414)
T ss_pred cCCcchhhhhhh-hhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccc-
Confidence 999999874433 1 456667777777777654210 0 1111 1122 788999999987
Q ss_pred cccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 209 EIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 209 ~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
.++..+..+.++..+++.+|.+...- .+...+.+..+....|
T Consensus 246 ~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~ 287 (414)
T KOG0531|consen 246 RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDN 287 (414)
T ss_pred cccccccccccccccchhhccccccc--cccccchHHHhccCcc
Confidence 55567788899999999999876532 2334445555555554
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.32 E-value=4.6e-08 Score=72.11 Aligned_cols=113 Identities=23% Similarity=0.314 Sum_probs=64.9
Q ss_pred CCCCCCCEEECCCCcCCCcccccc-cCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcC
Q 023644 94 GNLSSLQSLNLSCNRLSGSIPSAI-FTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYL 172 (279)
Q Consensus 94 ~~l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 172 (279)
....+|+..++++|.+. ..|..| ..++.++.+++.+|.++ .+|.++ ..++.|+.++++.|.+. ..|..+..+.++
T Consensus 50 ~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~-Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l 125 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEEL-AAMPALRSLNLRFNPLN-AEPRVIAPLIKL 125 (177)
T ss_pred hCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHH-hhhHHhhhcccccCccc-cchHHHHHHHhH
Confidence 33445555666666665 444444 33456667777777776 677664 66777777777777766 556666666677
Q ss_pred ceeeccCccCCCCCcccccCCCCcceeeccccccccccc
Q 023644 173 RILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIP 211 (279)
Q Consensus 173 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p 211 (279)
-.|+..+|.+. .+|..+..-...-..++.++.+.+.-+
T Consensus 126 ~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 126 DMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred HHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 77777666655 444333221222233444555544433
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.7e-08 Score=83.56 Aligned_cols=175 Identities=21% Similarity=0.150 Sum_probs=79.5
Q ss_pred EEEEEeCCCCCCc-cCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCc-CcccCchHHhhCCCCCcEEE
Q 023644 75 VTVLNISSLNLTG-PIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQ-LSGQIPANICSYLPFLEVLS 152 (279)
Q Consensus 75 l~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~~lp~~~~~~l~~L~~L~ 152 (279)
++++||++..++. .+..-+..+..|+.|.+.++++...+...+.+-..|+.|+++.+. ++..--..++.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 4455555544441 111223344555555555555555555555555555555555432 22111122334555555555
Q ss_pred eecccCCCCChhh-hhc-CCcCceeeccCccCC--C-CCcccccCCCCcceeecccc-cccccccccccCCCCCCEEecc
Q 023644 153 LSQNMLHGGIPST-LSN-CTYLRILSLPYNNFL--G-AIPKEIGNLTKLKLLYIGVN-RLQGEIPREFGNLAELERMSLA 226 (279)
Q Consensus 153 l~~n~l~~~~p~~-~~~-l~~L~~L~l~~n~l~--~-~~p~~l~~l~~L~~L~l~~n-~l~~~~p~~l~~l~~L~~L~l~ 226 (279)
++.+.+....... +.+ -.+|+.|++++..-. . .+..--..+++|.+|||++| .++...-..|.+++.|+++.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 5555443221111 111 124444454443210 0 01111124566666666654 3333333345566666666666
Q ss_pred CCcccccchh---hhhCCCCCCEEEccc
Q 023644 227 TNKLQGMIIN---FLQFDSSLCLLLYSF 251 (279)
Q Consensus 227 ~n~l~~~~~~---~l~~l~~L~~L~l~~ 251 (279)
.|- +.+|+ .+...++|.+|+.-+
T Consensus 347 RCY--~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 347 RCY--DIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred hhc--CCChHHeeeeccCcceEEEEecc
Confidence 653 23444 334566666666654
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.16 E-value=2.3e-06 Score=50.91 Aligned_cols=36 Identities=31% Similarity=0.589 Sum_probs=17.9
Q ss_pred CcceeecccccccccccccccCCCCCCEEeccCCccc
Q 023644 195 KLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQ 231 (279)
Q Consensus 195 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 231 (279)
+|++|++++|+++ .+|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555554
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.10 E-value=4.6e-06 Score=49.59 Aligned_cols=36 Identities=28% Similarity=0.562 Sum_probs=15.7
Q ss_pred CCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCc
Q 023644 98 SLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLS 134 (279)
Q Consensus 98 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 134 (279)
+|++|++++|+++ .+|..+..+++|++|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 33333444444444444444444
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.09 E-value=4.1e-06 Score=68.86 Aligned_cols=161 Identities=20% Similarity=0.186 Sum_probs=81.8
Q ss_pred CCCCCCCCEEECCCCcCCCcccccc----cCCCCCCEEEccCCcCcccCchH-----Hh--------hCCCCCcEEEeec
Q 023644 93 LGNLSSLQSLNLSCNRLSGSIPSAI----FTIYTLKNVSLHKNQLSGQIPAN-----IC--------SYLPFLEVLSLSQ 155 (279)
Q Consensus 93 ~~~l~~L~~L~l~~n~l~~~~p~~l----~~l~~L~~L~l~~n~l~~~lp~~-----~~--------~~l~~L~~L~l~~ 155 (279)
+.++++|+..++++|.+....|..+ ++-..|.+|.+++|.+. ++... +| ..-+.|++++...
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 4455666666666666554444332 34455666666666553 32211 10 2345666666666
Q ss_pred ccCCCCChh----hhhcCCcCceeeccCccCCCCCcc-----cccCCCCcceeecccccccccc----cccccCCCCCCE
Q 023644 156 NMLHGGIPS----TLSNCTYLRILSLPYNNFLGAIPK-----EIGNLTKLKLLYIGVNRLQGEI----PREFGNLAELER 222 (279)
Q Consensus 156 n~l~~~~p~----~~~~l~~L~~L~l~~n~l~~~~p~-----~l~~l~~L~~L~l~~n~l~~~~----p~~l~~l~~L~~ 222 (279)
|++..-... .+..-..|+++.+..|.+.-.... .+..+.+|+.||+.+|-++-.. ...+..++.|+.
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 665421111 112224566666666655422111 1123456777777777665321 223445566677
Q ss_pred EeccCCcccccchhhh-h-----CCCCCCEEEcccCcc
Q 023644 223 MSLATNKLQGMIINFL-Q-----FDSSLCLLLYSFVCS 254 (279)
Q Consensus 223 L~l~~n~l~~~~~~~l-~-----~l~~L~~L~l~~n~~ 254 (279)
|.+..|.++......+ . ..++|..|...||..
T Consensus 247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred ccccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence 7777776654433221 1 456667777777743
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.05 E-value=1.1e-05 Score=63.51 Aligned_cols=104 Identities=21% Similarity=0.311 Sum_probs=60.1
Q ss_pred CCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCCh--hhhhcCCcCce
Q 023644 97 SSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIP--STLSNCTYLRI 174 (279)
Q Consensus 97 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~ 174 (279)
.....+|+++|.+.. -..|..++.|.+|.+++|+++ .+.+.+-..+++|..|.+.+|++. .+- ..+..+++|++
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEY 117 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchh-hhhhcchhccCCccce
Confidence 345566677776652 233555667777777777776 555555455666777777777664 111 12456666777
Q ss_pred eeccCccCCCCC---cccccCCCCcceeecccc
Q 023644 175 LSLPYNNFLGAI---PKEIGNLTKLKLLYIGVN 204 (279)
Q Consensus 175 L~l~~n~l~~~~---p~~l~~l~~L~~L~l~~n 204 (279)
|.+-+|.++..- --.+..+++|++||+..-
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 776666655321 122345666666666543
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=1e-06 Score=73.15 Aligned_cols=83 Identities=31% Similarity=0.388 Sum_probs=44.3
Q ss_pred cEEEEEeCCCCCCc--cCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 74 RVTVLNISSLNLTG--PIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 74 ~l~~L~l~~~~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
+|+.+||.+|.++. .+...+.+++.|++|+++.|++...+-..-....+|+.|.+.+..+...-.......++.+++|
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 46666666666652 2333445566666666666666533222213445666666666655433333333555556666
Q ss_pred Eeecc
Q 023644 152 SLSQN 156 (279)
Q Consensus 152 ~l~~n 156 (279)
.++.|
T Consensus 152 HmS~N 156 (418)
T KOG2982|consen 152 HMSDN 156 (418)
T ss_pred hhccc
Confidence 55555
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.94 E-value=5.4e-06 Score=78.44 Aligned_cols=148 Identities=22% Similarity=0.277 Sum_probs=95.7
Q ss_pred CCCCEEECCCCcCCC-cccccc-cCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCce
Q 023644 97 SSLQSLNLSCNRLSG-SIPSAI-FTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRI 174 (279)
Q Consensus 97 ~~L~~L~l~~n~l~~-~~p~~l-~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 174 (279)
.+|++|++++...-. .=|..+ .-+|+|+.|.+.+-.+...=-..++.++++|..||+++++++. + ..+..+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHH
Confidence 468888888765321 112222 3478899998888766421112345788999999999988873 3 56778888888
Q ss_pred eeccCccCCC-CCcccccCCCCcceeeccccccccc--cc----ccccCCCCCCEEeccCCcccccchhhhh-CCCCCCE
Q 023644 175 LSLPYNNFLG-AIPKEIGNLTKLKLLYIGVNRLQGE--IP----REFGNLAELERMSLATNKLQGMIINFLQ-FDSSLCL 246 (279)
Q Consensus 175 L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~--~p----~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~ 246 (279)
|.+.+=.+.. ..-..+.++++|+.||+|....... +. +.-..+++|+.||.|++.+....-+.+- .-++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 8887655542 2224566789999999987654421 11 2234578999999999888876554333 3334443
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=7.9e-05 Score=65.74 Aligned_cols=131 Identities=18% Similarity=0.245 Sum_probs=78.2
Q ss_pred CcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCC-cCcccCchHHhhCCCCCcEE
Q 023644 73 HRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKN-QLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n-~l~~~lp~~~~~~l~~L~~L 151 (279)
.+.+.|+++++.+. .+| .+ -.+|++|.++++.--..+|..+ .++|++|++++| .+. .+|+ +|+.|
T Consensus 52 ~~l~~L~Is~c~L~-sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~-------sLe~L 117 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE-------SVRSL 117 (426)
T ss_pred cCCCEEEeCCCCCc-ccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc-------ccceE
Confidence 45778999998777 445 22 2469999998754323566655 258899999988 554 5553 46777
Q ss_pred EeecccCC--CCChhhhhcCCcCceeeccCccCC--CCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccC
Q 023644 152 SLSQNMLH--GGIPSTLSNCTYLRILSLPYNNFL--GAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLAT 227 (279)
Q Consensus 152 ~l~~n~l~--~~~p~~~~~l~~L~~L~l~~n~l~--~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 227 (279)
++..+... +.+|. +|+.|.+.+++.. ..+|..+ .++|++|++++|... ..|..+. .+|++|+++.
T Consensus 118 ~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 118 EIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI 186 (426)
T ss_pred EeCCCCCcccccCcc------hHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence 77766542 23444 3455555432211 1112111 156888888887755 3444333 5778888776
Q ss_pred C
Q 023644 228 N 228 (279)
Q Consensus 228 n 228 (279)
+
T Consensus 187 n 187 (426)
T PRK15386 187 E 187 (426)
T ss_pred c
Confidence 5
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.81 E-value=3.9e-05 Score=63.26 Aligned_cols=158 Identities=19% Similarity=0.178 Sum_probs=67.0
Q ss_pred cEEEEEeCCCCCCccCCcc----CCCCCCCCEEECCCCcCCC----cccccc---------cCCCCCCEEEccCCcCccc
Q 023644 74 RVTVLNISSLNLTGPIPAQ----LGNLSSLQSLNLSCNRLSG----SIPSAI---------FTIYTLKNVSLHKNQLSGQ 136 (279)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~----~~~l~~L~~L~l~~n~l~~----~~p~~l---------~~l~~L~~L~l~~n~l~~~ 136 (279)
++..++|+.|.+....|+. ++.-..|.+|.+++|.+.. .+..++ ..-+.|+......|++. .
T Consensus 93 ~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-n 171 (388)
T COG5238 93 RLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-N 171 (388)
T ss_pred cceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-c
Confidence 4555555555555443332 2333455555555555431 111111 12244555555555554 2
Q ss_pred CchH----HhhCCCCCcEEEeecccCCCCC-----hhhhhcCCcCceeeccCccCCCC----CcccccCCCCcceeeccc
Q 023644 137 IPAN----ICSYLPFLEVLSLSQNMLHGGI-----PSTLSNCTYLRILSLPYNNFLGA----IPKEIGNLTKLKLLYIGV 203 (279)
Q Consensus 137 lp~~----~~~~l~~L~~L~l~~n~l~~~~-----p~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~ 203 (279)
.|.. .+.....|.++.+..|.|...- -..+..+.+|+.||+.+|.++.. +...+..++.|+.|.+.+
T Consensus 172 gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnD 251 (388)
T COG5238 172 GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLND 251 (388)
T ss_pred CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccc
Confidence 2221 1222345555555555543110 01122445555555555555421 122233444455555555
Q ss_pred ccccccccccc----c--CCCCCCEEeccCCcccc
Q 023644 204 NRLQGEIPREF----G--NLAELERMSLATNKLQG 232 (279)
Q Consensus 204 n~l~~~~p~~l----~--~l~~L~~L~l~~n~l~~ 232 (279)
|.++.....++ . ..++|+.|...+|...+
T Consensus 252 Clls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 252 CLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 55543221111 1 22455555555554443
No 57
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=1.9e-06 Score=71.62 Aligned_cols=171 Identities=18% Similarity=0.160 Sum_probs=119.3
Q ss_pred cEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCc-CCCc-ccccccCCCCCCEEEccCCcCcccC-chHHhhCCCCCcE
Q 023644 74 RVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNR-LSGS-IPSAIFTIYTLKNVSLHKNQLSGQI-PANICSYLPFLEV 150 (279)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~p~~l~~l~~L~~L~l~~n~l~~~l-p~~~~~~l~~L~~ 150 (279)
+++.|.+.++.+...+...+++-.+|+.++++.++ ++.. ..--+.+++.|+.|+++.|.+.... ...+..--.+|..
T Consensus 211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~ 290 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQ 290 (419)
T ss_pred hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhh
Confidence 57888999999998888889999999999999864 4422 1223467899999999999886333 2222223467888
Q ss_pred EEeecccCC---CCChhhhhcCCcCceeeccCccC-CCCCcccccCCCCcceeeccccccccccccc---ccCCCCCCEE
Q 023644 151 LSLSQNMLH---GGIPSTLSNCTYLRILSLPYNNF-LGAIPKEIGNLTKLKLLYIGVNRLQGEIPRE---FGNLAELERM 223 (279)
Q Consensus 151 L~l~~n~l~---~~~p~~~~~l~~L~~L~l~~n~l-~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~---l~~l~~L~~L 223 (279)
|+++++.-. ..+......+++|..||+++|.. +...-..|.+++.|++|.++.|-. .+|.. +...+.|.+|
T Consensus 291 LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yL 368 (419)
T KOG2120|consen 291 LNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYL 368 (419)
T ss_pred hhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEE
Confidence 888886421 12333345789999999998863 333335567889999999998863 55654 5677899999
Q ss_pred eccCCcccccchhhhhCCCCCCE
Q 023644 224 SLATNKLQGMIINFLQFDSSLCL 246 (279)
Q Consensus 224 ~l~~n~l~~~~~~~l~~l~~L~~ 246 (279)
++.++--.+..--....+++|+.
T Consensus 369 dv~g~vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 369 DVFGCVSDTTMELLKEMLSHLKI 391 (419)
T ss_pred EeccccCchHHHHHHHhCccccc
Confidence 98876544333223345666665
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.77 E-value=7.2e-05 Score=65.98 Aligned_cols=135 Identities=18% Similarity=0.184 Sum_probs=86.2
Q ss_pred CCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecc-cCCCCChhhhhcCCc
Q 023644 93 LGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQN-MLHGGIPSTLSNCTY 171 (279)
Q Consensus 93 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~ 171 (279)
+..+.+++.|++++|.++ .+|. + ..+|+.|.++++.--..+|..+ ..+|++|.+++| .+. .+|. +
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP~------s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLPE------S 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-cccc------c
Confidence 444688999999999887 5562 2 3469999998744333777655 368999999998 444 5554 5
Q ss_pred CceeeccCccCC--CCCcccccCCCCcceeeccccc-cc-ccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEE
Q 023644 172 LRILSLPYNNFL--GAIPKEIGNLTKLKLLYIGVNR-LQ-GEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLL 247 (279)
Q Consensus 172 L~~L~l~~n~l~--~~~p~~l~~l~~L~~L~l~~n~-l~-~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 247 (279)
|+.|+++.+... +.+|. +|+.|.+.++. .. ..+|.. =.++|++|++++|.... .|..+. .+|+.|
T Consensus 114 Le~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L 182 (426)
T PRK15386 114 VRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LPEKLP--ESLQSI 182 (426)
T ss_pred cceEEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCccc-Cccccc--ccCcEE
Confidence 677777765532 13333 56677775432 11 112211 12689999999987542 333222 588899
Q ss_pred EcccC
Q 023644 248 LYSFV 252 (279)
Q Consensus 248 ~l~~n 252 (279)
.++.+
T Consensus 183 ~ls~n 187 (426)
T PRK15386 183 TLHIE 187 (426)
T ss_pred Eeccc
Confidence 98765
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.74 E-value=4e-05 Score=60.39 Aligned_cols=105 Identities=19% Similarity=0.170 Sum_probs=67.0
Q ss_pred CCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCC-cccccCCCCccee
Q 023644 121 YTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAI-PKEIGNLTKLKLL 199 (279)
Q Consensus 121 ~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L 199 (279)
.....+|+++|.+. .++. |..++.|.+|.+++|+|+..-|.--.-+++|..|.+.+|++.... -.-+..+++|++|
T Consensus 42 d~~d~iDLtdNdl~-~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchh-hccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 45667788888775 4432 356778888888888887555544445567788888887765211 1224556778888
Q ss_pred ecccccccccc---cccccCCCCCCEEeccCC
Q 023644 200 YIGVNRLQGEI---PREFGNLAELERMSLATN 228 (279)
Q Consensus 200 ~l~~n~l~~~~---p~~l~~l~~L~~L~l~~n 228 (279)
.+-+|..+..- ...+..+++|+.||++.=
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 88777776321 123566777777777543
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.65 E-value=5.2e-05 Score=71.90 Aligned_cols=176 Identities=18% Similarity=0.195 Sum_probs=114.9
Q ss_pred cEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCc-------------ccccc--cCCCCCCEEEccCCcCc-ccC
Q 023644 74 RVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGS-------------IPSAI--FTIYTLKNVSLHKNQLS-GQI 137 (279)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~p~~l--~~l~~L~~L~l~~n~l~-~~l 137 (279)
+++.+++.+.......-..+.... |+.+.+.+-..... +-..+ ..-.+|++|++++...- ..-
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W 139 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGW 139 (699)
T ss_pred eeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccH
Confidence 466777776655532222222223 66666655322110 00011 12357999999886442 223
Q ss_pred chHHhhCCCCCcEEEeecccCCC-CChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccc-ccccccc
Q 023644 138 PANICSYLPFLEVLSLSQNMLHG-GIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQG-EIPREFG 215 (279)
Q Consensus 138 p~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~p~~l~ 215 (279)
|..+..-+|+|+.|.+.+-.+.. .+-....++++|..||+|+.+++.. ..++.+++|+.|.+.+=.+.. ..-..+.
T Consensus 140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence 44555668999999999987743 2344456889999999999988843 667889999999888766652 2234678
Q ss_pred CCCCCCEEeccCCcccccc--h----hhhhCCCCCCEEEcccC
Q 023644 216 NLAELERMSLATNKLQGMI--I----NFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 216 ~l~~L~~L~l~~n~l~~~~--~----~~l~~l~~L~~L~l~~n 252 (279)
++++|+.||+|........ . +.-..+|+|+.||.++.
T Consensus 218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 8999999999987644322 2 23347999999999975
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.63 E-value=0.00018 Score=53.37 Aligned_cols=102 Identities=22% Similarity=0.304 Sum_probs=32.1
Q ss_pred CCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcce
Q 023644 119 TIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKL 198 (279)
Q Consensus 119 ~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 198 (279)
+..+|+.+.+.. .+. .+++..|....+|+.+.+..+ +...-...+..+.+++.+.+.+ .+.......|..+++++.
T Consensus 10 ~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 10 NCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 333444444432 232 344444444444444444432 2212222333443444444433 222122233334445555
Q ss_pred eecccccccccccccccCCCCCCEEecc
Q 023644 199 LYIGVNRLQGEIPREFGNLAELERMSLA 226 (279)
Q Consensus 199 L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 226 (279)
+++..+ +.......+.+. +++.+.+.
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 554433 222222334443 44544444
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.40 E-value=0.00042 Score=51.30 Aligned_cols=122 Identities=24% Similarity=0.272 Sum_probs=52.4
Q ss_pred cCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCc
Q 023644 92 QLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTY 171 (279)
Q Consensus 92 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 171 (279)
.|.+..+|+.+.+.. .+...-..+|..+.+|+.+.+.++ +. .++...|....+++.+.+.. .+.......+..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence 455556666666663 344334445666666777777664 54 56666666666677777754 333222334555677
Q ss_pred CceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCC
Q 023644 172 LRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAEL 220 (279)
Q Consensus 172 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 220 (279)
++.+.+..+ +.......+.+. +++.+.+.. .+...-...|.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 777777554 342333445554 677766654 3332333445555444
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.37 E-value=7.8e-05 Score=61.00 Aligned_cols=82 Identities=18% Similarity=0.201 Sum_probs=41.9
Q ss_pred hhcCCcCceeeccCc--cCCCCCcccccCCCCcceeeccccccccccccc---ccCCCCCCEEeccCCcccccc---hhh
Q 023644 166 LSNCTYLRILSLPYN--NFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPRE---FGNLAELERMSLATNKLQGMI---INF 237 (279)
Q Consensus 166 ~~~l~~L~~L~l~~n--~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~---l~~l~~L~~L~l~~n~l~~~~---~~~ 237 (279)
+..+++|+.|.++.| ++.+.++.....+++|+++++++|++.. ++. +..+.+|..|++.+|..++.- -..
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~v 138 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKV 138 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHH
Confidence 334455666666666 3333333333344666666666666642 222 334455566666666544321 124
Q ss_pred hhCCCCCCEEEc
Q 023644 238 LQFDSSLCLLLY 249 (279)
Q Consensus 238 l~~l~~L~~L~l 249 (279)
|..+++|++|+-
T Consensus 139 f~ll~~L~~LD~ 150 (260)
T KOG2739|consen 139 FLLLPSLKYLDG 150 (260)
T ss_pred HHHhhhhccccc
Confidence 445666666654
No 64
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=6.7e-05 Score=62.67 Aligned_cols=189 Identities=15% Similarity=0.128 Sum_probs=112.0
Q ss_pred CccceEec-CCCCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCc-ccccccCCCCCCEEEccCCcCccc-Cc
Q 023644 62 NWTGVTCD-LHSHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGS-IPSAIFTIYTLKNVSLHKNQLSGQ-IP 138 (279)
Q Consensus 62 ~w~gv~c~-~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~-lp 138 (279)
.|+.+.|- ...++++.|+++.|.+...+...-....+|+.|-+.+..+.-. ....+..++.++.|+++.|++..- +.
T Consensus 85 dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~D 164 (418)
T KOG2982|consen 85 DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLD 164 (418)
T ss_pred cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccc
Confidence 46666654 4688999999999999865543325678999999988876532 334456778888888888855411 11
Q ss_pred hH-HhhCCCCCcEEEeecccCCC--CChhhhhcCCcCceeeccCccCCCCC-cccccCCCCcceeecccccccccc-ccc
Q 023644 139 AN-ICSYLPFLEVLSLSQNMLHG--GIPSTLSNCTYLRILSLPYNNFLGAI-PKEIGNLTKLKLLYIGVNRLQGEI-PRE 213 (279)
Q Consensus 139 ~~-~~~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~-p~~ 213 (279)
++ +-...+.+.++.+..|.... ..-..-...+++..+-+..|.+...- .......+.+..|+|+.|++...- -..
T Consensus 165 d~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~ 244 (418)
T KOG2982|consen 165 DNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDA 244 (418)
T ss_pred cccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHH
Confidence 11 10112345555554443210 00011112345666666666554221 122334566667888888876321 245
Q ss_pred ccCCCCCCEEeccCCcccccc----hh--hhhCCCCCCEEEcc
Q 023644 214 FGNLAELERMSLATNKLQGMI----IN--FLQFDSSLCLLLYS 250 (279)
Q Consensus 214 l~~l~~L~~L~l~~n~l~~~~----~~--~l~~l~~L~~L~l~ 250 (279)
+.++++|..|++++|++...+ +. .++++++++.|+=+
T Consensus 245 Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 245 LNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred HcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 778888888888888765432 22 34577777777654
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.95 E-value=0.00059 Score=55.94 Aligned_cols=39 Identities=33% Similarity=0.458 Sum_probs=16.4
Q ss_pred CCCCCEEEccCC--cCcccCchHHhhCCCCCcEEEeecccCC
Q 023644 120 IYTLKNVSLHKN--QLSGQIPANICSYLPFLEVLSLSQNMLH 159 (279)
Q Consensus 120 l~~L~~L~l~~n--~l~~~lp~~~~~~l~~L~~L~l~~n~l~ 159 (279)
+++|++|.++.| .+.+.++.-+ ...++|+++++++|++.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccc
Confidence 444444444444 3332232222 22345555555555443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.00012 Score=60.63 Aligned_cols=86 Identities=26% Similarity=0.218 Sum_probs=42.8
Q ss_pred CCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChh--hhhcCCcCc
Q 023644 96 LSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPS--TLSNCTYLR 173 (279)
Q Consensus 96 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~ 173 (279)
+.+.+.|++-++.+..+ ....+++.|++|.|+-|.++ ++.+ +..+++|++|++..|.|. .+.+ -+.++++|+
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhh
Confidence 34455555555555421 22344555666666666665 3332 134555566666666554 2221 233555555
Q ss_pred eeeccCccCCCCCc
Q 023644 174 ILSLPYNNFLGAIP 187 (279)
Q Consensus 174 ~L~l~~n~l~~~~p 187 (279)
+|++..|...|.-+
T Consensus 92 ~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 92 TLWLDENPCCGEAG 105 (388)
T ss_pred hHhhccCCcccccc
Confidence 56655555544433
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.00014 Score=60.21 Aligned_cols=99 Identities=25% Similarity=0.257 Sum_probs=61.4
Q ss_pred CcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchH-HhhCCCCCcEE
Q 023644 73 HRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPAN-ICSYLPFLEVL 151 (279)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~-~~~~l~~L~~L 151 (279)
.+++.|++-|+++..+ .....++.|++|.|+-|.|+. -..+..+.+|++|.|..|.|. .+.+- ...++++|++|
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhH
Confidence 3566677777766632 123456777777777777762 234566777777777777776 44432 23667777777
Q ss_pred EeecccCCCCChhh-----hhcCCcCceee
Q 023644 152 SLSQNMLHGGIPST-----LSNCTYLRILS 176 (279)
Q Consensus 152 ~l~~n~l~~~~p~~-----~~~l~~L~~L~ 176 (279)
-+..|..-|..+.. +..+++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77777766554432 33456666554
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.13 E-value=0.003 Score=31.30 Aligned_cols=17 Identities=35% Similarity=0.515 Sum_probs=7.7
Q ss_pred cceeeccccccccccccc
Q 023644 196 LKLLYIGVNRLQGEIPRE 213 (279)
Q Consensus 196 L~~L~l~~n~l~~~~p~~ 213 (279)
|++|++++|+++ .+|..
T Consensus 2 L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp ESEEEETSSEES-EEGTT
T ss_pred ccEEECCCCcCE-eCChh
Confidence 444444444444 34433
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.09 E-value=0.0028 Score=31.42 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=11.0
Q ss_pred CCCEEeccCCcccccchhhhh
Q 023644 219 ELERMSLATNKLQGMIINFLQ 239 (279)
Q Consensus 219 ~L~~L~l~~n~l~~~~~~~l~ 239 (279)
+|++|++++|.++ .+|..|+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 3556666666666 4444443
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.60 E-value=0.00022 Score=64.80 Aligned_cols=178 Identities=20% Similarity=0.173 Sum_probs=110.9
Q ss_pred EEEEEeCCCCCCcc----CCccCCCCCCCCEEECCCCcCCCccc----ccccCC-CCCCEEEccCCcCccc----CchHH
Q 023644 75 VTVLNISSLNLTGP----IPAQLGNLSSLQSLNLSCNRLSGSIP----SAIFTI-YTLKNVSLHKNQLSGQ----IPANI 141 (279)
Q Consensus 75 l~~L~l~~~~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p----~~l~~l-~~L~~L~l~~n~l~~~----lp~~~ 141 (279)
+..++|.+|.+... +...+....+|..|++++|.+.+.-- ..+... ..+++|++..|.+++. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66778888887743 33456667888888998888763211 122222 4567777877777632 33344
Q ss_pred hhCCCCCcEEEeecccCCC----CChhhhh----cCCcCceeeccCccCCCCCc----ccccCCCC-cceeecccccccc
Q 023644 142 CSYLPFLEVLSLSQNMLHG----GIPSTLS----NCTYLRILSLPYNNFLGAIP----KEIGNLTK-LKLLYIGVNRLQG 208 (279)
Q Consensus 142 ~~~l~~L~~L~l~~n~l~~----~~p~~~~----~l~~L~~L~l~~n~l~~~~p----~~l~~l~~-L~~L~l~~n~l~~ 208 (279)
.....++.++++.|.+.. .++..+. ...++++|.+.++.++...- ..+...+. +..++++.|.+.+
T Consensus 169 -~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 169 -EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred -hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 336778888888887641 1222333 35678888888887653211 12223333 6668888888764
Q ss_pred c----ccccccCC-CCCCEEeccCCccccc----chhhhhCCCCCCEEEcccCc
Q 023644 209 E----IPREFGNL-AELERMSLATNKLQGM----IINFLQFDSSLCLLLYSFVC 253 (279)
Q Consensus 209 ~----~p~~l~~l-~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~ 253 (279)
. ..+.+..+ ..++.++++.|.++.. +++.+..+++++++.++.|.
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 3 23344455 6778888888888754 44455677788888888873
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.59 E-value=0.025 Score=26.01 Aligned_cols=13 Identities=31% Similarity=0.652 Sum_probs=4.9
Q ss_pred CCCEEEccCCcCc
Q 023644 122 TLKNVSLHKNQLS 134 (279)
Q Consensus 122 ~L~~L~l~~n~l~ 134 (279)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3445555555443
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.56 E-value=0.039 Score=28.35 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=13.9
Q ss_pred CCCCEEEccCCcCcccCchHHh
Q 023644 121 YTLKNVSLHKNQLSGQIPANIC 142 (279)
Q Consensus 121 ~~L~~L~l~~n~l~~~lp~~~~ 142 (279)
++|++|++++|+++ .+|+..|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45667777777776 6666654
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.56 E-value=0.039 Score=28.35 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=13.9
Q ss_pred CCCCEEEccCCcCcccCchHHh
Q 023644 121 YTLKNVSLHKNQLSGQIPANIC 142 (279)
Q Consensus 121 ~~L~~L~l~~n~l~~~lp~~~~ 142 (279)
++|++|++++|+++ .+|+..|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45667777777776 6666654
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.77 E-value=0.016 Score=46.06 Aligned_cols=82 Identities=17% Similarity=0.131 Sum_probs=41.2
Q ss_pred CCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCc-cccc-CCCCcceeecccc-cccccccccccCCCCCCE
Q 023644 146 PFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIP-KEIG-NLTKLKLLYIGVN-RLQGEIPREFGNLAELER 222 (279)
Q Consensus 146 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~l~-~l~~L~~L~l~~n-~l~~~~p~~l~~l~~L~~ 222 (279)
..++.++-++..|..+--+.+..++.++.|.+.++.-.+.-. .-++ -.++|+.|++++| +|+...-..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 345666666666655555555566666666655543221100 0011 1245666666655 344444444555555555
Q ss_pred EeccC
Q 023644 223 MSLAT 227 (279)
Q Consensus 223 L~l~~ 227 (279)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 55543
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.66 E-value=0.0012 Score=60.16 Aligned_cols=162 Identities=23% Similarity=0.256 Sum_probs=109.8
Q ss_pred CCcEEEEEeCCCCCCcc----CCccCCCC-CCCCEEECCCCcCCCc----ccccccCCCCCCEEEccCCcCc--cc--Cc
Q 023644 72 SHRVTVLNISSLNLTGP----IPAQLGNL-SSLQSLNLSCNRLSGS----IPSAIFTIYTLKNVSLHKNQLS--GQ--IP 138 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~----~~~~~~~l-~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~--~~--lp 138 (279)
...+..|++++|++.+. +-..+... ..++.|++..+.+++. +...+....+++.++++.|.+. |. ++
T Consensus 114 ~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~ 193 (478)
T KOG4308|consen 114 LPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLS 193 (478)
T ss_pred cccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHh
Confidence 45678899999998843 12223332 5677788888887743 4455666788999999999884 11 22
Q ss_pred hHH---hhCCCCCcEEEeecccCCCCCh----hhhhcCCc-CceeeccCccCCCC----CcccccCC-CCcceeeccccc
Q 023644 139 ANI---CSYLPFLEVLSLSQNMLHGGIP----STLSNCTY-LRILSLPYNNFLGA----IPKEIGNL-TKLKLLYIGVNR 205 (279)
Q Consensus 139 ~~~---~~~l~~L~~L~l~~n~l~~~~p----~~~~~l~~-L~~L~l~~n~l~~~----~p~~l~~l-~~L~~L~l~~n~ 205 (279)
..+ +....++++|.+.++.++.... ..+...++ ++.+++..|.+.+. ....+..+ ..+++++++.|.
T Consensus 194 ~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~ns 273 (478)
T KOG4308|consen 194 QALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNS 273 (478)
T ss_pred hhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCC
Confidence 222 1357789999999998873211 22334445 66789999887643 23344455 678999999999
Q ss_pred cccc----ccccccCCCCCCEEeccCCccccc
Q 023644 206 LQGE----IPREFGNLAELERMSLATNKLQGM 233 (279)
Q Consensus 206 l~~~----~p~~l~~l~~L~~L~l~~n~l~~~ 233 (279)
+++. +...+..+.+++.+.++.|.+...
T Consensus 274 i~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 274 ITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred ccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 9864 344566778999999999988754
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.36 E-value=0.0035 Score=50.84 Aligned_cols=85 Identities=16% Similarity=0.157 Sum_probs=38.1
Q ss_pred CCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcC
Q 023644 93 LGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYL 172 (279)
Q Consensus 93 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 172 (279)
+..+...+.||++.|++. .+-..++-+..+..|+++.|++. .+|.+. +....+..++...|..+ ..|.+++..+++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~-~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDA-KQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhH-HHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 344445555555555443 22333333444444455555554 444443 33444444444444433 444444444444
Q ss_pred ceeeccCcc
Q 023644 173 RILSLPYNN 181 (279)
Q Consensus 173 ~~L~l~~n~ 181 (279)
+++++-.|.
T Consensus 114 k~~e~k~~~ 122 (326)
T KOG0473|consen 114 KKNEQKKTE 122 (326)
T ss_pred chhhhccCc
Confidence 444444443
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.84 E-value=0.0054 Score=49.81 Aligned_cols=85 Identities=20% Similarity=0.115 Sum_probs=41.4
Q ss_pred cCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcc
Q 023644 118 FTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLK 197 (279)
Q Consensus 118 ~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 197 (279)
..+..-+.||++.|++. .+...+ +.++.+..++++.|.+. ..|..++.+..++.+++-.|..+ ..|.+++..+.++
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~-s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNF-SILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hccceeeeehhhhhHHH-hhccch-HHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 34445555555555554 333332 34444555555555544 44555555444444444444433 4455555555555
Q ss_pred eeecccccc
Q 023644 198 LLYIGVNRL 206 (279)
Q Consensus 198 ~L~l~~n~l 206 (279)
.+++-+|.+
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 555555443
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=91.58 E-value=0.08 Score=48.15 Aligned_cols=15 Identities=20% Similarity=0.197 Sum_probs=7.8
Q ss_pred cCCCCCCEEeccCCc
Q 023644 215 GNLAELERMSLATNK 229 (279)
Q Consensus 215 ~~l~~L~~L~l~~n~ 229 (279)
..+++++.+.+..+.
T Consensus 359 ~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 359 RSCPKLTDLSLSYCG 373 (482)
T ss_pred hcCCCcchhhhhhhh
Confidence 345555555555554
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.94 E-value=0.12 Score=25.91 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=10.4
Q ss_pred CCCCEEeccCCcccccchhh
Q 023644 218 AELERMSLATNKLQGMIINF 237 (279)
Q Consensus 218 ~~L~~L~l~~n~l~~~~~~~ 237 (279)
++|++|+|++|.+++..+..
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 45666666666666554443
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.67 E-value=0.24 Score=25.24 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=8.3
Q ss_pred CCCCEEeccCCccccc
Q 023644 218 AELERMSLATNKLQGM 233 (279)
Q Consensus 218 ~~L~~L~l~~n~l~~~ 233 (279)
++|++|++++|.++..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3455555555555543
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.67 E-value=0.24 Score=25.24 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=8.3
Q ss_pred CCCCEEeccCCccccc
Q 023644 218 AELERMSLATNKLQGM 233 (279)
Q Consensus 218 ~~L~~L~l~~n~l~~~ 233 (279)
++|++|++++|.++..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3455555555555543
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=90.28 E-value=0.22 Score=45.25 Aligned_cols=61 Identities=16% Similarity=0.113 Sum_probs=25.5
Q ss_pred CCcCceeeccCcc-CCCCCccccc-CCCCcceeeccccc-ccccccc-cccCCCCCCEEeccCCc
Q 023644 169 CTYLRILSLPYNN-FLGAIPKEIG-NLTKLKLLYIGVNR-LQGEIPR-EFGNLAELERMSLATNK 229 (279)
Q Consensus 169 l~~L~~L~l~~n~-l~~~~p~~l~-~l~~L~~L~l~~n~-l~~~~p~-~l~~l~~L~~L~l~~n~ 229 (279)
+++|+.++++... +++..-..+. .+++|++|.+.++. +++..-. ....+++|++|+++++.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 3455555555544 3322222222 14455555544444 3322111 12234555555555553
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.25 E-value=0.093 Score=41.80 Aligned_cols=81 Identities=15% Similarity=0.042 Sum_probs=44.4
Q ss_pred CCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCC-hhhhh-cCCcCceeeccCcc-CCCCCcccccCCCCcce
Q 023644 122 TLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGI-PSTLS-NCTYLRILSLPYNN-FLGAIPKEIGNLTKLKL 198 (279)
Q Consensus 122 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~-p~~~~-~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~ 198 (279)
.++.+|-++..+.+.--+.+ .+++.++.|.+.++.--+.. -+.++ -.++|+.|++++|. |+...-..+..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L-~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHL-RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHH-hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 45667777776663322333 56666666666665422111 01111 23577777777664 55444455566677777
Q ss_pred eeccc
Q 023644 199 LYIGV 203 (279)
Q Consensus 199 L~l~~ 203 (279)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 66655
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=84.31 E-value=0.68 Score=23.81 Aligned_cols=17 Identities=35% Similarity=0.731 Sum_probs=11.7
Q ss_pred CCCEEEccCCcCcccCch
Q 023644 122 TLKNVSLHKNQLSGQIPA 139 (279)
Q Consensus 122 ~L~~L~l~~n~l~~~lp~ 139 (279)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 5667777777776 6665
No 85
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=77.56 E-value=2.2 Score=38.03 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=13.4
Q ss_pred CCCCEEeccCCcc-cccchhhhhCCCCCCEEEc
Q 023644 218 AELERMSLATNKL-QGMIINFLQFDSSLCLLLY 249 (279)
Q Consensus 218 ~~L~~L~l~~n~l-~~~~~~~l~~l~~L~~L~l 249 (279)
..++.+.+++++. +...-+.+..+++|+.+++
T Consensus 401 ~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l 433 (483)
T KOG4341|consen 401 EGLEVLELDNCPLITDATLEHLSICRNLERIEL 433 (483)
T ss_pred cccceeeecCCCCchHHHHHHHhhCcccceeee
Confidence 3444444444432 2222334444444544444
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.05 E-value=2.8 Score=21.54 Aligned_cols=14 Identities=36% Similarity=0.695 Sum_probs=8.1
Q ss_pred CCCCEEeccCCccc
Q 023644 218 AELERMSLATNKLQ 231 (279)
Q Consensus 218 ~~L~~L~l~~n~l~ 231 (279)
++|+.|++++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45566666666554
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=69.79 E-value=3.3 Score=21.53 Aligned_cols=13 Identities=38% Similarity=0.613 Sum_probs=7.2
Q ss_pred CCCEEeccCCccc
Q 023644 219 ELERMSLATNKLQ 231 (279)
Q Consensus 219 ~L~~L~l~~n~l~ 231 (279)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 88
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=68.54 E-value=2.7 Score=37.41 Aligned_cols=104 Identities=25% Similarity=0.210 Sum_probs=49.6
Q ss_pred cCCcCceeeccCcc-CCCCCcccc-cCCCCcceeeccccccc--ccccccccCCCCCCEEeccCCcc-cccc----hhhh
Q 023644 168 NCTYLRILSLPYNN-FLGAIPKEI-GNLTKLKLLYIGVNRLQ--GEIPREFGNLAELERMSLATNKL-QGMI----INFL 238 (279)
Q Consensus 168 ~l~~L~~L~l~~n~-l~~~~p~~l-~~l~~L~~L~l~~n~l~--~~~p~~l~~l~~L~~L~l~~n~l-~~~~----~~~l 238 (279)
+..+|+.+.+..++ |+..--..+ .+.+.|+.+++.++... +.+...-.+++.|+.+.++++.. +... ...-
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 34455666555544 221111111 23455666666555332 12223334567777777776643 2221 1112
Q ss_pred hCCCCCCEEEcccCccceeeccCCCCCccchhhhhhhhhcC
Q 023644 239 QFDSSLCLLLYSFVCSLIVFLSDGDKAPCLSSLISCFNLCR 279 (279)
Q Consensus 239 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~l~~~~~l~~ 279 (279)
..+..|..+.++. |+.+.. .-+..+..|.+|||
T Consensus 398 c~~~~l~~lEL~n-~p~i~d-------~~Le~l~~c~~Ler 430 (483)
T KOG4341|consen 398 CSLEGLEVLELDN-CPLITD-------ATLEHLSICRNLER 430 (483)
T ss_pred ccccccceeeecC-CCCchH-------HHHHHHhhCcccce
Confidence 3456666777765 433221 23556666766664
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=47.52 E-value=16 Score=40.54 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=17.5
Q ss_pred ECCCCcCCCcccccccCCCCCCEEEccCCcCc
Q 023644 103 NLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLS 134 (279)
Q Consensus 103 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 134 (279)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 35556665444444555556666666665553
No 90
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=40.64 E-value=22 Score=24.79 Aligned_cols=8 Identities=25% Similarity=0.202 Sum_probs=4.0
Q ss_pred chhHHHHH
Q 023644 2 MSRFLLLH 9 (279)
Q Consensus 2 ~~~~~~~~ 9 (279)
|+++.++.
T Consensus 1 MaSK~~ll 8 (95)
T PF07172_consen 1 MASKAFLL 8 (95)
T ss_pred CchhHHHH
Confidence 55555443
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=38.49 E-value=26 Score=32.57 Aligned_cols=62 Identities=27% Similarity=0.256 Sum_probs=27.1
Q ss_pred CCCCEEEccCCcCcccCch--HHhhCCCCCcEEEeecccCCCCChhhhhcC--CcCceeeccCccCC
Q 023644 121 YTLKNVSLHKNQLSGQIPA--NICSYLPFLEVLSLSQNMLHGGIPSTLSNC--TYLRILSLPYNNFL 183 (279)
Q Consensus 121 ~~L~~L~l~~n~l~~~lp~--~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l--~~L~~L~l~~n~l~ 183 (279)
+.+..+++++|++. .+.. .+-...++|.+|+|++|...-..-..+.+. ..|++|.+.+|.+.
T Consensus 218 p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 218 PEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 44455555666554 3321 122345556666666662211111122221 23455556666554
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=37.11 E-value=20 Score=33.25 Aligned_cols=36 Identities=33% Similarity=0.335 Sum_probs=16.2
Q ss_pred CCCCCEEECCCCcCCCc--ccccccCCCCCCEEEccCC
Q 023644 96 LSSLQSLNLSCNRLSGS--IPSAIFTIYTLKNVSLHKN 131 (279)
Q Consensus 96 l~~L~~L~l~~n~l~~~--~p~~l~~l~~L~~L~l~~n 131 (279)
.+.+..+.+++|++... +..--...+.|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34455555555554310 1111123355566666665
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=36.86 E-value=22 Score=39.51 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=25.6
Q ss_pred eccCccCCCCCcccccCCCCcceeeccccccc
Q 023644 176 SLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQ 207 (279)
Q Consensus 176 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 207 (279)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57888888666677788888999999988765
No 94
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=30.29 E-value=37 Score=16.91 Aligned_cols=11 Identities=18% Similarity=0.250 Sum_probs=5.7
Q ss_pred CCCCEEEccCC
Q 023644 121 YTLKNVSLHKN 131 (279)
Q Consensus 121 ~~L~~L~l~~n 131 (279)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555555
Done!