Query 023644
Match_columns 279
No_of_seqs 271 out of 3202
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 10:22:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023644.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023644hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 9.5E-36 3.2E-40 255.8 17.2 222 26-252 2-231 (313)
2 3rgz_A Protein brassinosteroid 100.0 5.5E-32 1.9E-36 258.3 17.9 220 25-252 7-257 (768)
3 4fcg_A Uncharacterized protein 100.0 8.8E-32 3E-36 232.6 12.6 221 26-252 23-287 (328)
4 4eco_A Uncharacterized protein 100.0 3.5E-32 1.2E-36 254.5 10.6 220 28-252 28-363 (636)
5 4ecn_A Leucine-rich repeat pro 100.0 7.3E-31 2.5E-35 251.4 11.0 216 26-252 265-605 (876)
6 2o6q_A Variable lymphocyte rec 100.0 4.9E-27 1.7E-31 197.3 19.3 199 54-253 7-216 (270)
7 3rgz_A Protein brassinosteroid 99.9 5E-27 1.7E-31 224.1 17.7 187 73-261 466-722 (768)
8 1ogq_A PGIP-2, polygalacturona 99.9 5E-27 1.7E-31 201.4 13.3 178 73-252 76-278 (313)
9 1ozn_A Reticulon 4 receptor; N 99.9 7.2E-26 2.5E-30 191.5 17.5 179 73-252 56-235 (285)
10 3m19_A Variable lymphocyte rec 99.9 6.1E-26 2.1E-30 188.6 15.8 186 60-252 4-189 (251)
11 4fcg_A Uncharacterized protein 99.9 4.2E-26 1.4E-30 196.9 15.1 176 73-252 127-311 (328)
12 2z66_A Variable lymphocyte rec 99.9 5.6E-26 1.9E-30 194.0 13.1 195 57-252 3-233 (306)
13 1ozn_A Reticulon 4 receptor; N 99.9 5.3E-25 1.8E-29 186.2 17.2 181 71-252 30-211 (285)
14 2z80_A TOLL-like receptor 2, v 99.9 1E-25 3.5E-30 196.3 12.4 196 54-252 23-232 (353)
15 2ft3_A Biglycan; proteoglycan, 99.9 1.8E-24 6.2E-29 186.8 17.7 193 56-252 28-251 (332)
16 2id5_A Lingo-1, leucine rich r 99.9 8.8E-25 3E-29 197.7 16.3 195 58-253 6-211 (477)
17 2o6s_A Variable lymphocyte rec 99.9 6.9E-25 2.4E-29 177.1 12.8 179 57-243 3-190 (208)
18 1xku_A Decorin; proteoglycan, 99.9 3.9E-24 1.3E-28 184.5 17.9 192 57-252 27-250 (330)
19 3zyj_A Leucine-rich repeat-con 99.9 3.1E-24 1.1E-28 192.3 17.5 178 72-252 63-265 (440)
20 3m19_A Variable lymphocyte rec 99.9 5.8E-24 2E-28 176.7 17.2 161 72-233 34-194 (251)
21 3zyi_A Leucine-rich repeat-con 99.9 5.7E-24 1.9E-28 191.3 17.8 178 72-252 74-276 (452)
22 1p9a_G Platelet glycoprotein I 99.9 1.6E-23 5.5E-28 177.7 17.8 176 72-252 30-205 (290)
23 3rfs_A Internalin B, repeat mo 99.9 1.6E-23 5.6E-28 176.0 17.4 176 72-252 40-215 (272)
24 2z62_A TOLL-like receptor 4, v 99.9 4E-24 1.4E-28 180.0 13.3 179 73-252 28-234 (276)
25 2xwt_C Thyrotropin receptor; s 99.9 3.8E-24 1.3E-28 176.4 12.1 196 54-253 3-216 (239)
26 2o6q_A Variable lymphocyte rec 99.9 2.7E-23 9.3E-28 174.4 17.5 190 58-252 2-191 (270)
27 2z81_A CD282 antigen, TOLL-lik 99.9 4.3E-24 1.5E-28 196.2 13.7 191 60-252 3-206 (549)
28 3oja_B Anopheles plasmodium-re 99.9 1.7E-23 5.7E-28 194.5 17.8 112 73-185 75-186 (597)
29 3v47_A TOLL-like receptor 5B a 99.9 2.5E-23 8.6E-28 186.8 16.5 133 73-206 30-166 (455)
30 3zyj_A Leucine-rich repeat-con 99.9 2.2E-23 7.4E-28 186.9 15.9 178 73-252 88-289 (440)
31 3zyi_A Leucine-rich repeat-con 99.9 4.1E-23 1.4E-27 185.7 16.4 178 72-252 98-300 (452)
32 3v47_A TOLL-like receptor 5B a 99.9 4.5E-23 1.5E-27 185.2 16.4 89 73-161 79-169 (455)
33 2z66_A Variable lymphocyte rec 99.9 8.1E-24 2.8E-28 180.6 10.8 179 72-252 77-258 (306)
34 3o6n_A APL1; leucine-rich repe 99.9 1E-22 3.4E-27 179.6 17.9 111 73-184 69-179 (390)
35 3t6q_A CD180 antigen; protein- 99.9 3.6E-23 1.2E-27 192.3 15.3 181 54-235 3-196 (606)
36 3e6j_A Variable lymphocyte rec 99.9 1.1E-22 3.9E-27 166.6 16.2 165 54-235 12-176 (229)
37 1p9a_G Platelet glycoprotein I 99.9 1.2E-22 4E-27 172.4 16.6 175 72-253 9-183 (290)
38 1ziw_A TOLL-like receptor 3; i 99.9 5E-23 1.7E-27 193.9 14.5 177 72-249 24-202 (680)
39 3vq2_A TLR4, TOLL-like recepto 99.9 5.5E-23 1.9E-27 191.1 12.5 181 71-253 30-215 (606)
40 4eco_A Uncharacterized protein 99.9 1.4E-23 4.7E-28 196.4 8.0 176 72-252 205-412 (636)
41 3o6n_A APL1; leucine-rich repe 99.9 1.7E-22 5.9E-27 178.1 14.0 179 73-252 45-282 (390)
42 3t6q_A CD180 antigen; protein- 99.9 1.9E-22 6.4E-27 187.5 14.8 179 73-252 278-459 (606)
43 3rfs_A Internalin B, repeat mo 99.9 7.3E-22 2.5E-26 165.9 16.2 171 72-252 62-232 (272)
44 2z80_A TOLL-like receptor 2, v 99.9 6.4E-23 2.2E-27 178.6 9.8 180 72-252 75-287 (353)
45 1wwl_A Monocyte differentiatio 99.9 3.8E-23 1.3E-27 177.2 7.9 176 72-252 94-284 (312)
46 2ft3_A Biglycan; proteoglycan, 99.9 7.1E-22 2.4E-26 170.5 16.0 176 72-252 77-274 (332)
47 3vq2_A TLR4, TOLL-like recepto 99.9 8.6E-23 3E-27 189.7 10.9 179 73-252 350-531 (606)
48 2v70_A SLIT-2, SLIT homolog 2 99.9 1.1E-21 3.7E-26 159.8 15.3 155 77-235 15-170 (220)
49 1xku_A Decorin; proteoglycan, 99.9 1.9E-21 6.6E-26 167.6 17.5 176 72-252 75-273 (330)
50 1wwl_A Monocyte differentiatio 99.9 5.7E-23 1.9E-27 176.1 7.6 176 72-253 120-307 (312)
51 2v9t_B SLIT homolog 2 protein 99.9 1.1E-21 3.7E-26 159.8 14.7 160 57-232 7-166 (220)
52 2id5_A Lingo-1, leucine rich r 99.9 9.6E-22 3.3E-26 177.7 15.2 181 72-253 55-259 (477)
53 2xot_A Amphoterin-induced prot 99.9 9.6E-22 3.3E-26 171.8 13.5 172 77-252 22-199 (361)
54 4ecn_A Leucine-rich repeat pro 99.9 2.4E-22 8.2E-27 192.7 10.5 175 72-252 447-654 (876)
55 3j0a_A TOLL-like receptor 5; m 99.9 5.2E-22 1.8E-26 191.3 12.6 189 61-252 14-214 (844)
56 2z63_A TOLL-like receptor 4, v 99.9 2.4E-22 8.3E-27 185.2 9.6 180 72-252 346-528 (570)
57 2v70_A SLIT-2, SLIT homolog 2 99.9 2.5E-21 8.7E-26 157.6 14.6 150 100-252 14-163 (220)
58 2z7x_B TOLL-like receptor 1, v 99.9 1.3E-21 4.4E-26 178.7 14.0 84 72-159 44-128 (520)
59 3oja_A Leucine-rich immune mol 99.9 4.8E-22 1.6E-26 180.3 10.8 173 74-252 35-224 (487)
60 3oja_B Anopheles plasmodium-re 99.9 1.7E-21 5.9E-26 181.0 14.4 179 73-252 51-288 (597)
61 2z7x_B TOLL-like receptor 1, v 99.9 1.7E-21 5.9E-26 177.9 14.1 172 75-252 304-478 (520)
62 2z63_A TOLL-like receptor 4, v 99.9 9.7E-22 3.3E-26 181.2 12.4 179 72-252 27-210 (570)
63 2z62_A TOLL-like receptor 4, v 99.9 4.5E-21 1.6E-25 161.2 15.0 171 78-252 12-187 (276)
64 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.1E-21 1.1E-25 177.9 15.1 62 191-252 350-413 (562)
65 4g8a_A TOLL-like receptor 4; l 99.9 1.3E-21 4.4E-26 182.1 12.6 179 72-252 51-234 (635)
66 2v9t_B SLIT homolog 2 protein 99.9 4.8E-21 1.6E-25 156.0 14.4 149 100-252 14-162 (220)
67 1h6u_A Internalin H; cell adhe 99.9 1.1E-20 3.6E-25 161.7 16.9 166 72-252 62-227 (308)
68 1ziw_A TOLL-like receptor 3; i 99.9 4.9E-21 1.7E-25 180.3 15.9 186 72-259 404-625 (680)
69 4g8a_A TOLL-like receptor 4; l 99.9 4.5E-21 1.5E-25 178.4 15.3 171 78-252 36-211 (635)
70 4glp_A Monocyte differentiatio 99.9 6.2E-22 2.1E-26 169.4 8.7 174 74-252 92-282 (310)
71 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.6E-21 1.2E-25 177.5 14.3 155 94-252 350-507 (562)
72 4glp_A Monocyte differentiatio 99.9 1.1E-21 3.6E-26 168.0 9.6 176 72-253 116-305 (310)
73 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-21 3.6E-26 168.5 9.3 167 72-252 57-224 (317)
74 3j0a_A TOLL-like receptor 5; m 99.9 1E-20 3.5E-25 182.3 16.5 96 72-167 72-169 (844)
75 2xwt_C Thyrotropin receptor; s 99.9 3E-21 1E-25 159.0 10.9 175 72-253 54-237 (239)
76 1h6u_A Internalin H; cell adhe 99.8 3.7E-20 1.3E-24 158.3 17.1 167 72-253 40-206 (308)
77 1h6t_A Internalin B; cell adhe 99.8 3.4E-20 1.1E-24 157.3 16.7 165 73-252 46-210 (291)
78 2z81_A CD282 antigen, TOLL-lik 99.8 9.7E-21 3.3E-25 173.9 14.4 172 78-253 10-183 (549)
79 2o6s_A Variable lymphocyte rec 99.8 5.2E-20 1.8E-24 148.4 16.8 166 76-252 10-175 (208)
80 2ast_B S-phase kinase-associat 99.8 2E-21 6.8E-26 167.7 7.0 178 73-252 70-257 (336)
81 3e6j_A Variable lymphocyte rec 99.8 6.3E-20 2.1E-24 150.2 15.3 151 98-253 20-170 (229)
82 3oja_A Leucine-rich immune mol 99.8 9.5E-21 3.3E-25 171.8 10.3 175 72-253 57-248 (487)
83 4fmz_A Internalin; leucine ric 99.8 7.8E-20 2.7E-24 158.5 15.2 169 72-253 154-322 (347)
84 4ezg_A Putative uncharacterize 99.8 4.5E-20 1.5E-24 147.6 11.4 149 95-252 42-191 (197)
85 2ast_B S-phase kinase-associat 99.8 5.9E-21 2E-25 164.7 6.0 180 72-252 92-282 (336)
86 4fmz_A Internalin; leucine ric 99.8 5.9E-19 2E-23 152.9 18.0 167 72-252 131-297 (347)
87 2xot_A Amphoterin-induced prot 99.8 3.6E-20 1.2E-24 161.8 10.3 176 56-232 13-203 (361)
88 3cvr_A Invasion plasmid antige 99.8 7.4E-20 2.5E-24 168.2 12.6 173 54-252 36-240 (571)
89 4ezg_A Putative uncharacterize 99.8 1E-19 3.5E-24 145.5 11.7 152 73-232 44-195 (197)
90 3o53_A Protein LRIM1, AGAP0063 99.8 6.6E-21 2.3E-25 163.5 4.8 169 71-252 78-247 (317)
91 4ay9_X Follicle-stimulating ho 99.8 5.7E-20 1.9E-24 159.9 10.5 193 58-252 6-212 (350)
92 1m9s_A Internalin B; cell inva 99.8 3E-19 1E-23 165.5 15.4 166 72-252 42-207 (605)
93 1o6v_A Internalin A; bacterial 99.8 6.8E-19 2.3E-23 158.7 17.3 165 73-252 221-385 (466)
94 4b8c_D Glucose-repressible alc 99.8 5.8E-20 2E-24 174.0 7.3 202 27-238 129-336 (727)
95 1w8a_A SLIT protein; signaling 99.8 6E-19 2.1E-23 140.5 12.0 131 77-211 12-143 (192)
96 2ca6_A RAN GTPase-activating p 99.8 1.1E-20 3.9E-25 166.3 2.1 181 72-252 93-313 (386)
97 1o6v_A Internalin A; bacterial 99.8 1.8E-18 6.3E-23 155.9 16.5 167 73-252 177-363 (466)
98 1xeu_A Internalin C; cellular 99.8 4E-19 1.4E-23 148.5 11.1 149 72-234 40-188 (263)
99 2ca6_A RAN GTPase-activating p 99.8 7.7E-20 2.6E-24 161.0 5.9 181 72-252 59-284 (386)
100 3cvr_A Invasion plasmid antige 99.8 2E-18 6.7E-23 158.7 15.3 150 72-243 99-255 (571)
101 3bz5_A Internalin-J, INLJ; leu 99.8 4.3E-18 1.5E-22 153.1 16.0 145 72-234 105-249 (457)
102 3bz5_A Internalin-J, INLJ; leu 99.8 6.3E-18 2.1E-22 152.0 16.3 160 72-252 63-222 (457)
103 3goz_A Leucine-rich repeat-con 99.8 1.1E-19 3.6E-24 158.8 4.4 179 74-252 52-263 (362)
104 2o6r_A Variable lymphocyte rec 99.8 4.7E-18 1.6E-22 133.4 13.2 135 57-207 3-137 (177)
105 1w8a_A SLIT protein; signaling 99.8 2.6E-18 8.9E-23 136.8 11.1 132 100-235 11-143 (192)
106 1h6t_A Internalin B; cell adhe 99.8 3.8E-18 1.3E-22 144.6 12.4 151 72-235 67-217 (291)
107 3goz_A Leucine-rich repeat-con 99.8 3.7E-19 1.3E-23 155.4 5.9 182 72-253 21-236 (362)
108 1xeu_A Internalin C; cellular 99.8 5.6E-18 1.9E-22 141.5 12.0 163 74-252 20-182 (263)
109 2ell_A Acidic leucine-rich nuc 99.8 5.6E-18 1.9E-22 131.7 11.1 132 97-231 24-160 (168)
110 2wfh_A SLIT homolog 2 protein 99.7 1.4E-17 4.8E-22 132.6 13.0 129 100-233 13-141 (193)
111 2ell_A Acidic leucine-rich nuc 99.7 6.6E-18 2.3E-22 131.3 10.5 132 119-253 22-158 (168)
112 2je0_A Acidic leucine-rich nuc 99.7 2.7E-18 9.2E-23 130.9 7.9 127 97-250 17-148 (149)
113 2wfh_A SLIT homolog 2 protein 99.7 2.6E-17 8.9E-22 131.1 13.4 127 77-208 14-140 (193)
114 1m9s_A Internalin B; cell inva 99.7 1.3E-17 4.5E-22 154.6 13.4 152 72-236 64-215 (605)
115 1jl5_A Outer protein YOPM; leu 99.7 7E-19 2.4E-23 158.2 4.5 158 74-252 35-205 (454)
116 2o6r_A Variable lymphocyte rec 99.7 3.2E-17 1.1E-21 128.6 13.4 133 99-235 9-141 (177)
117 2je0_A Acidic leucine-rich nuc 99.7 6E-18 2.1E-22 128.9 8.8 128 72-202 16-148 (149)
118 1dce_A Protein (RAB geranylger 99.7 8.3E-20 2.8E-24 168.2 -2.6 102 147-253 442-544 (567)
119 4b8c_D Glucose-repressible alc 99.7 5.3E-18 1.8E-22 160.6 7.9 122 89-215 216-337 (727)
120 3g06_A SSPH2 (leucine-rich rep 99.7 1.6E-17 5.6E-22 154.2 9.2 156 74-252 62-251 (622)
121 1z7x_W Ribonuclease inhibitor; 99.7 9.5E-19 3.2E-23 157.2 0.6 178 74-252 200-408 (461)
122 1jl5_A Outer protein YOPM; leu 99.7 2E-16 7E-21 142.1 15.2 137 97-252 131-267 (454)
123 3g06_A SSPH2 (leucine-rich rep 99.7 4.1E-16 1.4E-20 144.8 16.8 75 170-253 221-295 (622)
124 1z7x_W Ribonuclease inhibitor; 99.7 5.4E-18 1.8E-22 152.2 3.6 178 74-252 86-294 (461)
125 1ds9_A Outer arm dynein; leuci 99.7 8.3E-19 2.8E-23 140.3 -2.3 146 97-248 18-180 (198)
126 1dce_A Protein (RAB geranylger 99.7 1E-18 3.5E-23 161.0 -2.2 122 122-249 442-567 (567)
127 4ay9_X Follicle-stimulating ho 99.7 4.6E-17 1.6E-21 141.5 6.9 174 72-251 53-232 (350)
128 1a9n_A U2A', U2A'; complex (nu 99.7 1.4E-16 4.7E-21 124.9 8.4 131 93-230 15-152 (176)
129 1ds9_A Outer arm dynein; leuci 99.7 6.4E-19 2.2E-23 140.9 -6.1 150 75-232 20-186 (198)
130 1a9n_A U2A', U2A'; complex (nu 99.6 3.2E-16 1.1E-20 122.8 8.0 129 118-252 16-150 (176)
131 3g39_A Variable lymphocyte rec 99.6 5.8E-15 2E-19 115.0 10.8 108 123-234 11-118 (170)
132 3g39_A Variable lymphocyte rec 99.6 1E-14 3.5E-19 113.6 11.4 105 77-185 13-117 (170)
133 2r9u_A Variable lymphocyte rec 99.6 1.3E-14 4.3E-19 113.5 10.6 106 124-233 15-120 (174)
134 2r9u_A Variable lymphocyte rec 99.5 2.7E-14 9.4E-19 111.6 9.9 103 148-253 14-116 (174)
135 3sb4_A Hypothetical leucine ri 99.5 1.6E-14 5.5E-19 124.3 9.1 176 73-252 49-307 (329)
136 3un9_A NLR family member X1; l 99.5 3.8E-15 1.3E-19 130.4 0.7 170 72-241 71-262 (372)
137 3ogk_B Coronatine-insensitive 99.4 1.3E-14 4.4E-19 134.2 0.7 87 166-252 432-523 (592)
138 3un9_A NLR family member X1; l 99.4 4.6E-15 1.6E-19 129.8 -3.2 158 96-253 71-250 (372)
139 3ogk_B Coronatine-insensitive 99.4 8.2E-14 2.8E-18 128.8 4.8 175 74-250 139-350 (592)
140 2ifg_A High affinity nerve gro 99.4 1.3E-12 4.4E-17 113.0 11.8 112 57-184 3-117 (347)
141 2ifg_A High affinity nerve gro 99.4 9.6E-13 3.3E-17 113.8 8.8 106 124-233 11-118 (347)
142 3sb4_A Hypothetical leucine ri 99.4 1.7E-12 5.9E-17 111.5 9.5 175 74-252 26-284 (329)
143 2p1m_B Transport inhibitor res 99.3 2.5E-13 8.6E-18 125.5 -0.8 178 73-252 289-516 (594)
144 2p1m_B Transport inhibitor res 99.3 1.3E-13 4.4E-18 127.4 -2.7 155 96-252 371-541 (594)
145 4fdw_A Leucine rich hypothetic 99.2 4.6E-10 1.6E-14 99.0 13.6 171 74-252 158-355 (401)
146 4fdw_A Leucine rich hypothetic 99.1 4.2E-10 1.4E-14 99.2 13.3 171 74-252 136-333 (401)
147 2ra8_A Uncharacterized protein 99.1 1.1E-10 3.7E-15 101.5 6.5 177 72-252 106-317 (362)
148 2ra8_A Uncharacterized protein 98.9 9.2E-10 3.2E-14 95.6 4.8 176 73-253 139-341 (362)
149 3rw6_A Nuclear RNA export fact 98.8 2.4E-11 8.1E-16 100.8 -8.3 80 168-249 168-258 (267)
150 1io0_A Tropomodulin; LRR prote 98.7 8.2E-09 2.8E-13 81.1 4.1 59 194-252 93-161 (185)
151 1io0_A Tropomodulin; LRR prote 98.7 5.5E-09 1.9E-13 82.1 2.7 87 145-231 64-164 (185)
152 3rw6_A Nuclear RNA export fact 98.7 1.5E-09 5.3E-14 89.9 -0.7 152 60-224 77-257 (267)
153 3e4g_A ATP synthase subunit S, 98.3 3.1E-07 1.1E-11 71.0 3.4 85 145-229 60-150 (176)
154 3e4g_A ATP synthase subunit S, 98.2 6.7E-07 2.3E-11 69.1 2.7 84 121-205 61-150 (176)
155 4fs7_A Uncharacterized protein 98.1 3.1E-05 1.1E-09 67.7 11.7 150 94-252 227-376 (394)
156 4fs7_A Uncharacterized protein 97.9 6.8E-05 2.3E-09 65.6 11.3 152 91-252 202-353 (394)
157 4h09_A Hypothetical leucine ri 97.9 9E-05 3.1E-09 64.3 11.9 128 117-249 213-340 (379)
158 4gt6_A Cell surface protein; l 97.9 4.5E-05 1.5E-09 66.7 9.5 147 97-252 242-388 (394)
159 4h09_A Hypothetical leucine ri 97.8 0.00017 5.8E-09 62.5 11.9 144 93-242 213-356 (379)
160 4gt6_A Cell surface protein; l 97.8 0.00012 4.3E-09 63.9 11.0 156 90-252 198-367 (394)
161 1pgv_A TMD-1, tropomodulin TMD 97.7 3.2E-05 1.1E-09 60.7 4.9 88 166-253 66-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00014 4.9E-09 57.0 3.6 18 117-134 66-83 (197)
163 3rfe_A Platelet glycoprotein I 97.2 0.00062 2.1E-08 49.7 6.0 36 122-158 32-67 (130)
164 3rfe_A Platelet glycoprotein I 97.1 0.00074 2.5E-08 49.3 5.7 56 174-231 12-68 (130)
165 2lz0_A Uncharacterized protein 43.2 33 0.0011 23.0 4.2 12 166-177 16-27 (100)
166 2lz0_A Uncharacterized protein 39.0 47 0.0016 22.2 4.4 46 182-228 8-53 (100)
167 3ox7_P MH027; urokinase-type p 22.1 21 0.00071 16.3 0.1 9 59-67 6-14 (23)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=9.5e-36 Score=255.84 Aligned_cols=222 Identities=33% Similarity=0.525 Sum_probs=198.5
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCC--ccceEecCCC--CcEEEEEeCCCCCCc--cCCccCCCCCCC
Q 023644 26 STITTDRDALLALKAHITHDPTNFFAKNWNTSICFCN--WTGVTCDLHS--HRVTVLNISSLNLTG--PIPAQLGNLSSL 99 (279)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~c~--w~gv~c~~~~--~~l~~L~l~~~~l~~--~~~~~~~~l~~L 99 (279)
.|.++|.+||++||+++. +|. .+.+ |..+.++|. |.||.|+... ++|+.|+++++++.+ .+|+.++++++|
T Consensus 2 ~c~~~~~~aL~~~k~~~~-~~~-~l~~-W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L 78 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG-NPT-TLSS-WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT-CCG-GGTT-CCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred CCCHHHHHHHHHHHHhcC-Ccc-cccC-CCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCC
Confidence 467889999999999994 665 5666 988777888 9999998433 789999999999999 899999999999
Q ss_pred CEEECCC-CcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeecc
Q 023644 100 QSLNLSC-NRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLP 178 (279)
Q Consensus 100 ~~L~l~~-n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 178 (279)
++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+ ..+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 157 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG-GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH-hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence 9999995 99999999999999999999999999998888877 889999999999999998999999999999999999
Q ss_pred CccCCCCCcccccCCC-CcceeecccccccccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 179 YNNFLGAIPKEIGNLT-KLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 179 ~n~l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
+|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |++|++++|.+++.+|..+..+++|++|++++|
T Consensus 158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence 9999989999999887 899999999999988888888876 888888888888888888888888888888776
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.98 E-value=5.5e-32 Score=258.30 Aligned_cols=220 Identities=26% Similarity=0.368 Sum_probs=176.5
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCccceEecCCCCcEEEEEeCCCCCCcc---CC-----------
Q 023644 25 TSTITTDRDALLALKAHITHDPTNFFAKNWNTSICFCNWTGVTCDLHSHRVTVLNISSLNLTGP---IP----------- 90 (279)
Q Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~l~~L~l~~~~l~~~---~~----------- 90 (279)
++..++|++||++||+++. ||. .+.+ |..+.++|.|+||+|+ .++|+.|+++++++.|. ++
T Consensus 7 ~~~~~~~~~all~~k~~~~-~~~-~l~~-W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~ 81 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLP-DKN-LLPD-WSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLES 81 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCS-CTT-SSTT-CCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCE
T ss_pred ccCCHHHHHHHHHHHhhCC-Ccc-cccC-CCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccc
Confidence 3446789999999999996 776 6777 9888889999999998 68999999999998875 33
Q ss_pred ------------ccCCCCCCCCEEECCCCcCCCcccc--cccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecc
Q 023644 91 ------------AQLGNLSSLQSLNLSCNRLSGSIPS--AIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQN 156 (279)
Q Consensus 91 ------------~~~~~l~~L~~L~l~~n~l~~~~p~--~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n 156 (279)
..++.+++|++|++++|.++|.+|. .+..+++|++|++++|.+.+.+|..++..+++|++|++++|
T Consensus 82 l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n 161 (768)
T 3rgz_A 82 LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161 (768)
T ss_dssp EECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS
T ss_pred cCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC
Confidence 4677888999999999998888888 88889999999999998887777766567888888888888
Q ss_pred cCCCCChhh---hhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCccccc
Q 023644 157 MLHGGIPST---LSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGM 233 (279)
Q Consensus 157 ~l~~~~p~~---~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 233 (279)
.+++..|.. +..+++|++|++++|.+++..|. ..+++|++|++++|.+++.+|. ++++++|++|++++|.+++.
T Consensus 162 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~ 238 (768)
T 3rgz_A 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD 238 (768)
T ss_dssp CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSC
T ss_pred ccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCc
Confidence 888777766 66777777777777777765543 5677777777777777766665 77777777777777777777
Q ss_pred chhhhhCCCCCCEEEcccC
Q 023644 234 IINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 234 ~~~~l~~l~~L~~L~l~~n 252 (279)
+|..++.+++|++|++++|
T Consensus 239 ~~~~l~~l~~L~~L~Ls~n 257 (768)
T 3rgz_A 239 FSRAISTCTELKLLNISSN 257 (768)
T ss_dssp HHHHTTTCSSCCEEECCSS
T ss_pred ccHHHhcCCCCCEEECCCC
Confidence 7777777777777777776
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=8.8e-32 Score=232.57 Aligned_cols=221 Identities=22% Similarity=0.268 Sum_probs=143.4
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCccCCCC----CCCCCCCCccceEec--------CCCCcEEEEEeCCCCCCccCCccC
Q 023644 26 STITTDRDALLALKAHITHDPTNFFAKNW----NTSICFCNWTGVTCD--------LHSHRVTVLNISSLNLTGPIPAQL 93 (279)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~w----~~~~~~c~w~gv~c~--------~~~~~l~~L~l~~~~l~~~~~~~~ 93 (279)
+...++..||++||..+..++..+... | ......|.|.|+.|. ....+++.|++++|++. .+|+.+
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~-w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSA-WRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHH-HHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhh-hcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 456688999999999987788777766 8 456678999999995 23467888888888887 667777
Q ss_pred CCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhc-----
Q 023644 94 GNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSN----- 168 (279)
Q Consensus 94 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~----- 168 (279)
..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+ ..+++|++|++++|.+.+.+|..+..
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l-~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~ 177 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI-ASLNRLRELSIRACPELTELPEPLASTDASG 177 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG-GGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH-hcCcCCCEEECCCCCCccccChhHhhccchh
Confidence 77777777777777777 67777777777777777777776 677665 66666666666666555555544432
Q ss_pred ----CCcCceeeccCccCCCCCccccc-----------------------CCCCcceeecccccccccccccccCCCCCC
Q 023644 169 ----CTYLRILSLPYNNFLGAIPKEIG-----------------------NLTKLKLLYIGVNRLQGEIPREFGNLAELE 221 (279)
Q Consensus 169 ----l~~L~~L~l~~n~l~~~~p~~l~-----------------------~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 221 (279)
+++|++|++++|.++ .+|..++ .+++|++|++++|.+.+.+|..+.++++|+
T Consensus 178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256 (328)
T ss_dssp CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence 445555555555444 4444444 444555555555544445555555555555
Q ss_pred EEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 222 RMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 222 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
+|++++|.+.+.+|..++.+++|++|++++|
T Consensus 257 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp EEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred EEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence 5555555555555555555555555555554
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=3.5e-32 Score=254.54 Aligned_cols=220 Identities=19% Similarity=0.332 Sum_probs=190.0
Q ss_pred ChhHHHHHHHHHHhcCCCCCCccC------CCCCCCCCCCCc---cceEecCCCCcEEEEEeCCCCCCccCCccCCCCCC
Q 023644 28 ITTDRDALLALKAHITHDPTNFFA------KNWNTSICFCNW---TGVTCDLHSHRVTVLNISSLNLTGPIPAQLGNLSS 98 (279)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~~~~~------~~w~~~~~~c~w---~gv~c~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~ 98 (279)
...|+.||.+++.++.++.+.... .+|..+.++|.| .||+|+. .++|+.|+|+++++.|.+|+.++.+++
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~g~lp~~l~~L~~ 106 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGASGRVPDAIGQLTE 106 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT-TCCEEEEECTTSCCEEEECGGGGGCTT
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC-CCCEEEEEecCcccCCcCChHHhcCcc
Confidence 346899999999998654433221 149988899999 9999985 379999999999999999999999999
Q ss_pred CCEEECCCCc----------------------------------------------------------------------
Q 023644 99 LQSLNLSCNR---------------------------------------------------------------------- 108 (279)
Q Consensus 99 L~~L~l~~n~---------------------------------------------------------------------- 108 (279)
|++|++++|.
T Consensus 107 L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l 186 (636)
T 4eco_A 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186 (636)
T ss_dssp CCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTT
T ss_pred ceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhh
Confidence 9999999884
Q ss_pred --------CCCcccccccCCCCCCEEEccCCcCccc-----------------CchHHhh--CCCCCcEEEeecccCCCC
Q 023644 109 --------LSGSIPSAIFTIYTLKNVSLHKNQLSGQ-----------------IPANICS--YLPFLEVLSLSQNMLHGG 161 (279)
Q Consensus 109 --------l~~~~p~~l~~l~~L~~L~l~~n~l~~~-----------------lp~~~~~--~l~~L~~L~l~~n~l~~~ 161 (279)
++| +|..++++++|++|++++|.++|. +|+.+ . .+++|++|++++|.+.+.
T Consensus 187 ~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~ 264 (636)
T 4eco_A 187 QIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTK 264 (636)
T ss_dssp TTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSS
T ss_pred hhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCcc
Confidence 334 788899999999999999999975 88887 6 899999999999999999
Q ss_pred ChhhhhcCCcCceeeccCcc-CCC-CCcccccCC------CCcceeecccccccccccc--cccCCCCCCEEeccCCccc
Q 023644 162 IPSTLSNCTYLRILSLPYNN-FLG-AIPKEIGNL------TKLKLLYIGVNRLQGEIPR--EFGNLAELERMSLATNKLQ 231 (279)
Q Consensus 162 ~p~~~~~l~~L~~L~l~~n~-l~~-~~p~~l~~l------~~L~~L~l~~n~l~~~~p~--~l~~l~~L~~L~l~~n~l~ 231 (279)
+|..++++++|++|++++|. +++ .+|..++.+ ++|++|++++|.++ .+|. .++++++|++|++++|.++
T Consensus 265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCc
Confidence 99999999999999999998 888 788888776 88999999999988 8888 8888999999999999888
Q ss_pred ccchhhhhCCCCCCEEEcccC
Q 023644 232 GMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 232 ~~~~~~l~~l~~L~~L~l~~n 252 (279)
|.+| .++.+++|++|++++|
T Consensus 344 g~ip-~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 344 GKLP-AFGSEIKLASLNLAYN 363 (636)
T ss_dssp EECC-CCEEEEEESEEECCSS
T ss_pred cchh-hhCCCCCCCEEECCCC
Confidence 8887 7777777777777776
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=7.3e-31 Score=251.45 Aligned_cols=216 Identities=21% Similarity=0.334 Sum_probs=185.2
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCccCCCCCCCC-----CC--CCc------------cceEecCCCCcEEEEEeCCCCCC
Q 023644 26 STITTDRDALLALKAHITHDPTNFFAKNWNTSI-----CF--CNW------------TGVTCDLHSHRVTVLNISSLNLT 86 (279)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~-----~~--c~w------------~gv~c~~~~~~l~~L~l~~~~l~ 86 (279)
++...|..||++||+++. +| . |..+. ++ |.| .||.|+. .++|+.|+|+++++.
T Consensus 265 ~~~~~d~~ALl~~k~~l~-~~-----~-W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~ 336 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALD-GK-----N-WRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAK 336 (876)
T ss_dssp CHHHHHHHHHHHHHHHTT-GG-----G-CCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCE
T ss_pred ccchHHHHHHHHHHHHcC-CC-----C-CCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCC
Confidence 344579999999999994 55 2 54432 34 999 9999985 579999999999999
Q ss_pred ccCCccCCCCCCCCEEEC-CCCcCCCc-----------------------------------------------------
Q 023644 87 GPIPAQLGNLSSLQSLNL-SCNRLSGS----------------------------------------------------- 112 (279)
Q Consensus 87 ~~~~~~~~~l~~L~~L~l-~~n~l~~~----------------------------------------------------- 112 (279)
|.+|+.++++++|++|++ ++|.+.|.
T Consensus 337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 999999999999999999 77754333
Q ss_pred -----------------------ccccccCCCCCCEEEccCCcCcc-----------------cCchHH-hhCCCCCcEE
Q 023644 113 -----------------------IPSAIFTIYTLKNVSLHKNQLSG-----------------QIPANI-CSYLPFLEVL 151 (279)
Q Consensus 113 -----------------------~p~~l~~l~~L~~L~l~~n~l~~-----------------~lp~~~-~~~l~~L~~L 151 (279)
+|..+..+++|++|++++|.++| .+|+.+ |..+++|++|
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L 496 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred cccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEE
Confidence 78889999999999999999997 388887 3489999999
Q ss_pred EeecccCCCCChhhhhcCCcCceeeccCcc-CCC-CCcccccCCC-------Ccceeecccccccccccc--cccCCCCC
Q 023644 152 SLSQNMLHGGIPSTLSNCTYLRILSLPYNN-FLG-AIPKEIGNLT-------KLKLLYIGVNRLQGEIPR--EFGNLAEL 220 (279)
Q Consensus 152 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~-~~p~~l~~l~-------~L~~L~l~~n~l~~~~p~--~l~~l~~L 220 (279)
++++|.+.+.+|..++.+++|++|++++|+ +++ .+|..++.++ +|++|++++|.++ .+|. .+.++++|
T Consensus 497 ~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L 575 (876)
T 4ecn_A 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKL 575 (876)
T ss_dssp EEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTC
T ss_pred ECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCC
Confidence 999999999999999999999999999998 888 7887766555 8999999999998 8888 88899999
Q ss_pred CEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 221 ERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 221 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
+.|++++|.++ .+| .++.+++|+.|++++|
T Consensus 576 ~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 576 GLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYN 605 (876)
T ss_dssp CEEECTTSCCC-BCC-CCCTTSEESEEECCSS
T ss_pred CEEECCCCCcc-cch-hhcCCCcceEEECcCC
Confidence 99999999888 667 7888888888888887
No 6
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=4.9e-27 Score=197.31 Aligned_cols=199 Identities=24% Similarity=0.279 Sum_probs=171.3
Q ss_pred CCCCCCCC--CccceEec---------CCCCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCC
Q 023644 54 WNTSICFC--NWTGVTCD---------LHSHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYT 122 (279)
Q Consensus 54 w~~~~~~c--~w~gv~c~---------~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 122 (279)
|.+..|.| .|..+.|. ....+++.|++++|.+.+..+..+.++++|++|++++|.++...+..+..+++
T Consensus 7 ~~~~~C~c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~ 86 (270)
T 2o6q_A 7 KDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN 86 (270)
T ss_dssp GGTCSBEEETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTT
T ss_pred CCCCCCEeCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCC
Confidence 55555555 35556664 12446899999999999776678999999999999999998655566788999
Q ss_pred CCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecc
Q 023644 123 LKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIG 202 (279)
Q Consensus 123 L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 202 (279)
|++|++++|.++ .+|...|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 87 L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 87 LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165 (270)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence 999999999998 7787777899999999999999997777788999999999999999997666678899999999999
Q ss_pred cccccccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccCc
Q 023644 203 VNRLQGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFVC 253 (279)
Q Consensus 203 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 253 (279)
+|.+++..+..+.++++|++|++++|.+++..+..+..+++|+.|++++|+
T Consensus 166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 999997777779999999999999999998877788999999999999983
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=5e-27 Score=224.09 Aligned_cols=187 Identities=34% Similarity=0.489 Sum_probs=151.4
Q ss_pred CcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEE
Q 023644 73 HRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLS 152 (279)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~ 152 (279)
.+++.|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.++|.+|..+ ..+++|++|+
T Consensus 466 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~ 544 (768)
T 3rgz_A 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL-GDCRSLIWLD 544 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG-GGCTTCCEEE
T ss_pred CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH-cCCCCCCEEE
Confidence 457777777777777777777777788888888888777777777778888888888888877777776 7788888888
Q ss_pred eecccCCCCChhhhh-----------------------------------------------------------------
Q 023644 153 LSQNMLHGGIPSTLS----------------------------------------------------------------- 167 (279)
Q Consensus 153 l~~n~l~~~~p~~~~----------------------------------------------------------------- 167 (279)
+++|.++|.+|..+.
T Consensus 545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~ 624 (768)
T 3rgz_A 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624 (768)
T ss_dssp CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence 888877776665442
Q ss_pred -----cCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcccccchhhhhCCC
Q 023644 168 -----NCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFLQFDS 242 (279)
Q Consensus 168 -----~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 242 (279)
.+++|++|++++|.++|.+|..++++++|+.|++++|.++|.+|..++++++|+.|++++|+++|.+|..++.++
T Consensus 625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~ 704 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704 (768)
T ss_dssp CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCC
Confidence 245678888999999989999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEcccCccceeeccC
Q 023644 243 SLCLLLYSFVCSLIVFLSD 261 (279)
Q Consensus 243 ~L~~L~l~~n~~~~~~~~~ 261 (279)
+|++|++++| ......+.
T Consensus 705 ~L~~L~ls~N-~l~g~iP~ 722 (768)
T 3rgz_A 705 MLTEIDLSNN-NLSGPIPE 722 (768)
T ss_dssp CCSEEECCSS-EEEEECCS
T ss_pred CCCEEECcCC-cccccCCC
Confidence 9999999997 33333333
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=5e-27 Score=201.44 Aligned_cols=178 Identities=26% Similarity=0.398 Sum_probs=113.9
Q ss_pred CcEEEEEeCC-CCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 73 HRVTVLNISS-LNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 73 ~~l~~L~l~~-~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
.+++.|++++ |.+.+.+|..++++++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+ ..+++|++|
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L 154 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGI 154 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH-hcCCCCCeE
Confidence 4566677763 66666666666666666666666666665666666666666666666666665555554 556666666
Q ss_pred EeecccCCCCChhhhhcCC-cCceeeccCccCC-----------------------CCCcccccCCCCcceeeccccccc
Q 023644 152 SLSQNMLHGGIPSTLSNCT-YLRILSLPYNNFL-----------------------GAIPKEIGNLTKLKLLYIGVNRLQ 207 (279)
Q Consensus 152 ~l~~n~l~~~~p~~~~~l~-~L~~L~l~~n~l~-----------------------~~~p~~l~~l~~L~~L~l~~n~l~ 207 (279)
++++|.+++.+|..+..++ +|++|++++|.++ +..|..+..+++|++|++++|.++
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence 6666666555555555554 5555555555544 445555555666666666666666
Q ss_pred ccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 208 GEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 208 ~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
+.+|. +..+++|++|++++|.+++.+|..+..+++|++|++++|
T Consensus 235 ~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 235 FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp CBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred eecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 54444 566677777777777777777777777888888888776
No 9
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=7.2e-26 Score=191.51 Aligned_cols=179 Identities=23% Similarity=0.226 Sum_probs=104.5
Q ss_pred CcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCc-CCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 73 HRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNR-LSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
.+++.|++++|.+.+..+..+..+++|++|++++|. ++...|..+..+++|++|++++|.++ .++...+..+++|++|
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L 134 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYL 134 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCC-EECHhHhhCCcCCCEE
Confidence 345555555555554445555555555555555554 44333555555555666666666555 3333333555666666
Q ss_pred EeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCccc
Q 023644 152 SLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQ 231 (279)
Q Consensus 152 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 231 (279)
++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|+.|++++|.++
T Consensus 135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence 66666665444444555666666666666665444444556666666666666666555666666666666666666666
Q ss_pred ccchhhhhCCCCCCEEEcccC
Q 023644 232 GMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 232 ~~~~~~l~~l~~L~~L~l~~n 252 (279)
+..+..+..+++|++|++++|
T Consensus 215 ~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 215 ALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp CCCHHHHTTCTTCCEEECCSS
T ss_pred cCCHHHcccCcccCEEeccCC
Confidence 655556666666666666666
No 10
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.94 E-value=6.1e-26 Score=188.61 Aligned_cols=186 Identities=24% Similarity=0.245 Sum_probs=148.3
Q ss_pred CCCccceEecCCCCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCch
Q 023644 60 FCNWTGVTCDLHSHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPA 139 (279)
Q Consensus 60 ~c~w~gv~c~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~ 139 (279)
++.|.|..|. ...+.++++++++. .+|..+. ++++.|++++|.+++..+..+..+++|++|++++|.++ .++.
T Consensus 4 Cp~~~gC~C~---~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~ 76 (251)
T 3m19_A 4 CETVTGCTCN---EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSA 76 (251)
T ss_dssp CHHHHSSEEE---GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCT
T ss_pred CCCCCceEcC---CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCH
Confidence 5578888884 23557888888887 4565554 57888888888888777777888888888888888888 4555
Q ss_pred HHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCC
Q 023644 140 NICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAE 219 (279)
Q Consensus 140 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 219 (279)
..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 55578888888888888888666667788888888888888888666666778888888888888888666667888888
Q ss_pred CCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 220 LERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 220 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
|++|++++|.+++..+..+..+++|++|++++|
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 888888888888877778888888888888887
No 11
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=4.2e-26 Score=196.94 Aligned_cols=176 Identities=19% Similarity=0.271 Sum_probs=151.9
Q ss_pred CcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccC---------CCCCCEEEccCCcCcccCchHHhh
Q 023644 73 HRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFT---------IYTLKNVSLHKNQLSGQIPANICS 143 (279)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~---------l~~L~~L~l~~n~l~~~lp~~~~~ 143 (279)
.+++.|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.++ .+|..+ .
T Consensus 127 ~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l-~ 203 (328)
T 4fcg_A 127 AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI-A 203 (328)
T ss_dssp TTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGG-G
T ss_pred CCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhh-c
Confidence 45677777777777 56667777777777777777666667766543 778888888888887 788776 7
Q ss_pred CCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEE
Q 023644 144 YLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERM 223 (279)
Q Consensus 144 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 223 (279)
.+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+.++++|++|
T Consensus 204 ~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 282 (328)
T 4fcg_A 204 NLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282 (328)
T ss_dssp GCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEE
T ss_pred CCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEE
Confidence 8899999999999998 567789999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 224 SLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 224 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
++++|.+.+.+|+.++.+++|+.+++..|
T Consensus 283 ~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 283 DLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp ECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred eCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 99999999999999999999999999876
No 12
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=5.6e-26 Score=194.04 Aligned_cols=195 Identities=24% Similarity=0.293 Sum_probs=121.6
Q ss_pred CCCCCCccceEecC---------CCCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCc--ccccccCCCCCCE
Q 023644 57 SICFCNWTGVTCDL---------HSHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGS--IPSAIFTIYTLKN 125 (279)
Q Consensus 57 ~~~~c~w~gv~c~~---------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~p~~l~~l~~L~~ 125 (279)
..|.|.|.++.|.. ...+++.|++++|.+....+..+.++++|++|++++|.++.. .+..+..+++|++
T Consensus 3 ~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 82 (306)
T 2z66_A 3 SRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82 (306)
T ss_dssp TTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCE
T ss_pred CCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCE
Confidence 45789999999972 245799999999999854445578999999999999988732 2444445555555
Q ss_pred EEccCCcCcccCchHH------------------------hhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCcc
Q 023644 126 VSLHKNQLSGQIPANI------------------------CSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNN 181 (279)
Q Consensus 126 L~l~~n~l~~~lp~~~------------------------~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 181 (279)
|++++|.++ .+|..+ +..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 83 L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 83 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp EECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred EECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence 555555554 344332 2445555555555555554444455555555555555555
Q ss_pred CCC-CCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 182 FLG-AIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 182 l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
+++ .+|..+..+++|++|++++|.+++..|..+.++++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence 554 34555555566666666666665555555666666666666666666555555556666666666665
No 13
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=5.3e-25 Score=186.16 Aligned_cols=181 Identities=19% Similarity=0.159 Sum_probs=165.9
Q ss_pred CCCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCc-CcccCchHHhhCCCCCc
Q 023644 71 HSHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQ-LSGQIPANICSYLPFLE 149 (279)
Q Consensus 71 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~~lp~~~~~~l~~L~ 149 (279)
...+++.|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|. ++ .++...+..+++|+
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~ 108 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLH 108 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCC
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCC
Confidence 35679999999999998777889999999999999999998778999999999999999998 76 67555558999999
Q ss_pred EEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCc
Q 023644 150 VLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNK 229 (279)
Q Consensus 150 ~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 229 (279)
+|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.
T Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence 99999999998778889999999999999999997777778999999999999999997766779999999999999999
Q ss_pred ccccchhhhhCCCCCCEEEcccC
Q 023644 230 LQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 230 l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
+++..|..+..+++|++|++++|
T Consensus 189 l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 189 VAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSS
T ss_pred ccccCHhHccCcccccEeeCCCC
Confidence 99999999999999999999998
No 14
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=1e-25 Score=196.30 Aligned_cols=196 Identities=22% Similarity=0.253 Sum_probs=168.9
Q ss_pred CCCCCCCCCccceEec-----------CCCCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCC
Q 023644 54 WNTSICFCNWTGVTCD-----------LHSHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYT 122 (279)
Q Consensus 54 w~~~~~~c~w~gv~c~-----------~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 122 (279)
|....+.|.|.++ |+ ....+++.|++++|.+.+..+..+.++++|++|++++|.+++..|..+..+++
T Consensus 23 ~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 23 SNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101 (353)
T ss_dssp ----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence 4455567788776 54 12357999999999999776678999999999999999999877888999999
Q ss_pred CCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChh--hhhcCCcCceeeccCcc-CCCCCcccccCCCCccee
Q 023644 123 LKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPS--TLSNCTYLRILSLPYNN-FLGAIPKEIGNLTKLKLL 199 (279)
Q Consensus 123 L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L 199 (279)
|++|++++|.++ .+|...+..+++|++|++++|.++ .+|. .+..+++|++|++++|. +.+..+..+..+++|++|
T Consensus 102 L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 102 LEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp CCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 999999999998 788886799999999999999998 4554 78899999999999994 665667789999999999
Q ss_pred ecccccccccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 200 YIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 200 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
++++|.+++..|..+.++++|++|++++|.++......+..+++|++|++++|
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCC
Confidence 99999999888999999999999999999997655556667999999999997
No 15
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=1.8e-24 Score=186.84 Aligned_cols=193 Identities=21% Similarity=0.244 Sum_probs=137.2
Q ss_pred CCCCCCCccceEecC---------CCCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEE
Q 023644 56 TSICFCNWTGVTCDL---------HSHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNV 126 (279)
Q Consensus 56 ~~~~~c~w~gv~c~~---------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 126 (279)
+..|.|.|+.+.|.. ...+++.|++++|.+.+..+..+.++++|++|++++|.+++..|..+..+++|++|
T Consensus 28 p~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 28 PFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp CSSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred CCCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 445668899999861 24579999999999998778889999999999999999998888999999999999
Q ss_pred EccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCC--CCcccccCC-----------
Q 023644 127 SLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLG--AIPKEIGNL----------- 193 (279)
Q Consensus 127 ~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~p~~l~~l----------- 193 (279)
++++|.++ .+|..++ ++|++|++++|.+++..+..+..+++|++|++++|.++. ..|..+..+
T Consensus 108 ~L~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~ 183 (332)
T 2ft3_A 108 YISKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK 183 (332)
T ss_dssp ECCSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSB
T ss_pred ECCCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCC
Confidence 99999998 7777652 677888888887775555556777777777777776642 333333222
Q ss_pred ---------CCcceeecccccccccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 194 ---------TKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 194 ---------~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 184 l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 251 (332)
T 2ft3_A 184 LTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251 (332)
T ss_dssp CSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred CCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC
Confidence 34555555555555444455566666666666666666555555566666666666655
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=8.8e-25 Score=197.69 Aligned_cols=195 Identities=18% Similarity=0.217 Sum_probs=174.5
Q ss_pred CCCC--CccceEec---------CCCCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEE
Q 023644 58 ICFC--NWTGVTCD---------LHSHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNV 126 (279)
Q Consensus 58 ~~~c--~w~gv~c~---------~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 126 (279)
.|.| .|..+.|. ....+++.|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|
T Consensus 6 ~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 85 (477)
T 2id5_A 6 RCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTL 85 (477)
T ss_dssp TCEEETTTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCeECCCCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEE
Confidence 3445 35677775 234578999999999998888899999999999999999998889999999999999
Q ss_pred EccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccc
Q 023644 127 SLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRL 206 (279)
Q Consensus 127 ~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l 206 (279)
++++|.++ .+|...|..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 86 ~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 86 GLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp ECCSSCCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred ECCCCcCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence 99999998 78887778999999999999999988888999999999999999999988888999999999999999999
Q ss_pred cccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccCc
Q 023644 207 QGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFVC 253 (279)
Q Consensus 207 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 253 (279)
++..+..+.++++|+.|++++|.+++..+..+..+++|++|+++.|.
T Consensus 165 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence 97777789999999999999999999888889999999999998863
No 17
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.92 E-value=6.9e-25 Score=177.05 Aligned_cols=179 Identities=23% Similarity=0.266 Sum_probs=144.0
Q ss_pred CCCCCCccceEecC---------CCCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEE
Q 023644 57 SICFCNWTGVTCDL---------HSHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVS 127 (279)
Q Consensus 57 ~~~~c~w~gv~c~~---------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 127 (279)
..|.|.|.++.|.. ...+++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 3 ~~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 3 SRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN 82 (208)
T ss_dssp TTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEE
Confidence 45789999999972 244688899999988866666678888999999999988866566678888999999
Q ss_pred ccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeeccccccc
Q 023644 128 LHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQ 207 (279)
Q Consensus 128 l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 207 (279)
+++|.++ .+|...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 83 Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 83 LSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCCCcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 9999888 677666688889999999999888666666788888999999998888666666788888999999988776
Q ss_pred ccccccccCCCCCCEEeccCCcccccchhhhhCCCC
Q 023644 208 GEIPREFGNLAELERMSLATNKLQGMIINFLQFDSS 243 (279)
Q Consensus 208 ~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 243 (279)
+ .+++|++|+++.|.++|.+|+.++.++.
T Consensus 162 ~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 C-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp C-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred c-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 4 3457888888889999888887776654
No 18
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=3.9e-24 Score=184.54 Aligned_cols=192 Identities=20% Similarity=0.243 Sum_probs=129.1
Q ss_pred CCCCCCccceEecC---------CCCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEE
Q 023644 57 SICFCNWTGVTCDL---------HSHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVS 127 (279)
Q Consensus 57 ~~~~c~w~gv~c~~---------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 127 (279)
..|.|.|+.+.|.. ...+++.|++++|.+.+..+..++++++|++|++++|.+++..|..+..+++|++|+
T Consensus 27 ~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 27 FRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp TTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 34678899888861 245789999999999987777899999999999999999987789999999999999
Q ss_pred ccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCC--CCcccccCC------------
Q 023644 128 LHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLG--AIPKEIGNL------------ 193 (279)
Q Consensus 128 l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~p~~l~~l------------ 193 (279)
+++|.++ .+|..++ ++|++|++++|.+++..+..+..+++|++|++++|.+.. ..+..+..+
T Consensus 107 Ls~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp CCSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred CCCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 9999887 6665441 455555555555554444444444444444444444421 222333333
Q ss_pred ---------CCcceeecccccccccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 194 ---------TKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 194 ---------~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
++|++|++++|.+++..|..+.++++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 183 l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 183 ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250 (330)
T ss_dssp CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred cccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC
Confidence 34555555555555555556666666666666666666665556666666666666665
No 19
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=3.1e-24 Score=192.31 Aligned_cols=178 Identities=24% Similarity=0.268 Sum_probs=128.0
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
..+++.|++++|++.+..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.++ .+|...|..+++|++|
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKEL 141 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEE
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccccCcee
Confidence 456788888888888777778888888888888888888766777888888888888888887 6776655778888888
Q ss_pred EeecccCCCCChhhhhcCC-------------------------cCceeeccCccCCCCCcccccCCCCcceeecccccc
Q 023644 152 SLSQNMLHGGIPSTLSNCT-------------------------YLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRL 206 (279)
Q Consensus 152 ~l~~n~l~~~~p~~~~~l~-------------------------~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l 206 (279)
++++|.++...+..+..++ +|++|++++|.++ .+| .+..+++|++|++++|.+
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCC
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCcc
Confidence 8888877644443444444 4555555555544 333 245556666666666766
Q ss_pred cccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 207 QGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 207 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
++..|..+.++++|+.|++++|.+++..+..+..+++|++|++++|
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence 6666667777777777777777777776777777777777777776
No 20
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=5.8e-24 Score=176.65 Aligned_cols=161 Identities=25% Similarity=0.293 Sum_probs=148.3
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
..+++.|++++|++.+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.++ .+|...|..+++|++|
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKL 112 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEE
Confidence 457999999999999888888999999999999999999888888999999999999999998 7777777899999999
Q ss_pred EeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCccc
Q 023644 152 SLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQ 231 (279)
Q Consensus 152 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 231 (279)
++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.++
T Consensus 113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred EcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 99999999666666889999999999999999777778999999999999999999887888999999999999999998
Q ss_pred cc
Q 023644 232 GM 233 (279)
Q Consensus 232 ~~ 233 (279)
+.
T Consensus 193 c~ 194 (251)
T 3m19_A 193 CS 194 (251)
T ss_dssp TT
T ss_pred CC
Confidence 76
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=5.7e-24 Score=191.26 Aligned_cols=178 Identities=21% Similarity=0.227 Sum_probs=135.0
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
..+++.|++++|++.+..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.++ .+|...|..+++|++|
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLREL 152 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEE
Confidence 457899999999999888888999999999999999999877788899999999999999998 7777766888999999
Q ss_pred EeecccCCCCChhhhhcC-------------------------CcCceeeccCccCCCCCcccccCCCCcceeecccccc
Q 023644 152 SLSQNMLHGGIPSTLSNC-------------------------TYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRL 206 (279)
Q Consensus 152 ~l~~n~l~~~~p~~~~~l-------------------------~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l 206 (279)
++++|.++...+..+..+ ++|++|++++|.+++ +| .+..+++|++|++++|.+
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCC
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcC
Confidence 999988875444444444 445555555555542 22 345556666677777777
Q ss_pred cccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 207 QGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 207 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
++..|..+.++++|+.|++++|.+++..+..+..+++|++|++++|
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence 6666677777777777777777777777777777777777777776
No 22
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.6e-23 Score=177.72 Aligned_cols=176 Identities=25% Similarity=0.162 Sum_probs=157.2
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
..+++.|++++|.+.+..+..+..+++|++|++++|.+++. +.. ..+++|++|++++|.++ .+|..+ ..+++|++|
T Consensus 30 ~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~-~l~~~~-~~l~~L~~L 105 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLSHNQLQ-SLPLLG-QTLPALTVL 105 (290)
T ss_dssp CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECCSSCCS-SCCCCT-TTCTTCCEE
T ss_pred CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECCCCcCC-cCchhh-ccCCCCCEE
Confidence 46799999999999988888899999999999999999854 333 78999999999999998 888766 889999999
Q ss_pred EeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCccc
Q 023644 152 SLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQ 231 (279)
Q Consensus 152 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 231 (279)
++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+.++++|++|++++|.++
T Consensus 106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 99999999777788999999999999999999777777889999999999999999666666789999999999999998
Q ss_pred ccchhhhhCCCCCCEEEcccC
Q 023644 232 GMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 232 ~~~~~~l~~l~~L~~L~l~~n 252 (279)
.+|..+..+++|+.+++++|
T Consensus 186 -~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 186 -TIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp -CCCTTTTTTCCCSEEECCSC
T ss_pred -ccChhhcccccCCeEEeCCC
Confidence 56777778889999999998
No 23
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.6e-23 Score=175.99 Aligned_cols=176 Identities=23% Similarity=0.258 Sum_probs=148.1
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
..+++.|+++++.+.. + +.+..+++|++|++++|.+++ + ..+..+++|++|++++|.++ .++...+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEE
Confidence 3468889999888773 3 347788999999999999885 3 46888899999999999998 6666666888999999
Q ss_pred EeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCccc
Q 023644 152 SLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQ 231 (279)
Q Consensus 152 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 231 (279)
++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 99999998776667888899999999999988777777788899999999999998777777888999999999999999
Q ss_pred ccchhhhhCCCCCCEEEcccC
Q 023644 232 GMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 232 ~~~~~~l~~l~~L~~L~l~~n 252 (279)
+..+..+..+++|++|++++|
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSS
T ss_pred ccCHHHHhCCcCCCEEEccCC
Confidence 888888888999999999887
No 24
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=4e-24 Score=179.95 Aligned_cols=179 Identities=20% Similarity=0.144 Sum_probs=109.5
Q ss_pred CcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEE
Q 023644 73 HRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLS 152 (279)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~ 152 (279)
.+++.|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEEE
Confidence 34666666666666554445666666666666666666544455666666666666666665 33333335566666666
Q ss_pred eecccCCCCChhhhhcCCcCceeeccCccCCCC-CcccccCCCCcceeeccccccccccccc------------------
Q 023644 153 LSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGA-IPKEIGNLTKLKLLYIGVNRLQGEIPRE------------------ 213 (279)
Q Consensus 153 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~p~~------------------ 213 (279)
+++|.+++..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 666665544443455556666666666655542 3555555556666666665555433222
Q ss_pred ---------ccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 214 ---------FGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 214 ---------l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
.....+|++|++++|.+++..+..+..+++|++|++++|
T Consensus 187 n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 187 NPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp SCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred CcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 222336788888888888777777788888999999887
No 25
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=3.8e-24 Score=176.41 Aligned_cols=196 Identities=17% Similarity=0.194 Sum_probs=166.1
Q ss_pred CCCCCCCCCc-cceE--ecC------CCCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCc-CCCcccccccCCCCC
Q 023644 54 WNTSICFCNW-TGVT--CDL------HSHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNR-LSGSIPSAIFTIYTL 123 (279)
Q Consensus 54 w~~~~~~c~w-~gv~--c~~------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L 123 (279)
|.+..|.|.+ ..+. |.. ...+++.|++++|++.+..+..+.++++|++|++++|. +++..+..|.++++|
T Consensus 3 ~cp~~C~C~~~~~~~v~c~~l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L 82 (239)
T 2xwt_C 3 CSSPPCECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKV 82 (239)
T ss_dssp CCSSSCSEEECSTTEEEECSCSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTC
T ss_pred CCCCCCeeCCCCcceeEccCccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCC
Confidence 4455666754 4444 752 34579999999999998777789999999999999997 886666689999999
Q ss_pred CEEEccC-CcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCc---eeeccCc-cCCCCCcccccCCCCcc-
Q 023644 124 KNVSLHK-NQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLR---ILSLPYN-NFLGAIPKEIGNLTKLK- 197 (279)
Q Consensus 124 ~~L~l~~-n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~---~L~l~~n-~l~~~~p~~l~~l~~L~- 197 (279)
++|++++ |.++ .++...|..+++|++|++++|.+++ +|. +..+++|+ +|++++| .+++..+..|..+++|+
T Consensus 83 ~~L~l~~~n~l~-~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~ 159 (239)
T 2xwt_C 83 THIEIRNTRNLT-YIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETL 159 (239)
T ss_dssp CEEEEEEETTCC-EECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEE
T ss_pred cEEECCCCCCee-EcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhccee
Confidence 9999999 9998 7887767899999999999999985 676 88888888 9999999 88876667799999999
Q ss_pred eeecccccccccccccccCCCCCCEEeccCCc-ccccchhhhhCC-CCCCEEEcccCc
Q 023644 198 LLYIGVNRLQGEIPREFGNLAELERMSLATNK-LQGMIINFLQFD-SSLCLLLYSFVC 253 (279)
Q Consensus 198 ~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l-~~L~~L~l~~n~ 253 (279)
+|++++|.++ .+|......++|++|++++|. +++..+..+..+ ++|++|++++|.
T Consensus 160 ~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 160 TLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp EEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred EEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence 9999999999 666554444899999999995 998878889999 999999999983
No 26
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=2.7e-23 Score=174.42 Aligned_cols=190 Identities=26% Similarity=0.327 Sum_probs=170.1
Q ss_pred CCCCCccceEecCCCCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccC
Q 023644 58 ICFCNWTGVTCDLHSHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQI 137 (279)
Q Consensus 58 ~~~c~w~gv~c~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~l 137 (279)
.+.|.|.|+.|.. ..+.+.++++++++. .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.++ .+
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i 76 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TL 76 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CC
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-ee
Confidence 3679999999973 335678999999999 4676554 68999999999999777778999999999999999998 88
Q ss_pred chHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCC
Q 023644 138 PANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNL 217 (279)
Q Consensus 138 p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l 217 (279)
|..+|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++
T Consensus 77 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 156 (270)
T 2o6q_A 77 PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156 (270)
T ss_dssp CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCC
Confidence 88887899999999999999997666778899999999999999998888888999999999999999997766778999
Q ss_pred CCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 218 AELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 218 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 157 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cccceeEecCCcCcEeChhHhccCCCcCEEECCCC
Confidence 99999999999999988888999999999999998
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=4.3e-24 Score=196.25 Aligned_cols=191 Identities=23% Similarity=0.270 Sum_probs=165.0
Q ss_pred CCCccceEecC-----------CCCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEc
Q 023644 60 FCNWTGVTCDL-----------HSHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSL 128 (279)
Q Consensus 60 ~c~w~gv~c~~-----------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 128 (279)
.|.|.|+ |+. ...+++.|++++|.+.+..|..+.++++|++|++++|.+++..|..|..+++|++|++
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 4777777 651 2357999999999999888889999999999999999999888889999999999999
Q ss_pred cCCcCcccCchHHhhCCCCCcEEEeecccCCC-CChhhhhcCCcCceeeccCccCCCCCc-ccccCCCCcceeecccccc
Q 023644 129 HKNQLSGQIPANICSYLPFLEVLSLSQNMLHG-GIPSTLSNCTYLRILSLPYNNFLGAIP-KEIGNLTKLKLLYIGVNRL 206 (279)
Q Consensus 129 ~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l 206 (279)
++|.++ .++...++.+++|++|++++|.+++ ..|..+..+++|++|++++|.+.+.+| ..+..+++|++|++++|.+
T Consensus 82 s~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 82 SDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp TTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 999999 5666655999999999999999986 356789999999999999998555555 6789999999999999999
Q ss_pred cccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 207 QGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 207 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
++.+|..+.++++|++|++++|.+.......++.+++|++|++++|
T Consensus 161 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 206 (549)
T 2z81_A 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206 (549)
T ss_dssp CEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESC
T ss_pred cccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCC
Confidence 9999999999999999999998876544444567888999998887
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.7e-23 Score=194.50 Aligned_cols=112 Identities=25% Similarity=0.292 Sum_probs=88.4
Q ss_pred CcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEE
Q 023644 73 HRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLS 152 (279)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~ 152 (279)
++++.|++++|.+.+..+..++.+++|++|++++|.+++..|..|..+++|++|++++|.++ .+|..+|..+++|++|+
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEE
Confidence 35677788888887776677888888888888888888777777788888888888888887 77777667888888888
Q ss_pred eecccCCCCChhhhhcCCcCceeeccCccCCCC
Q 023644 153 LSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGA 185 (279)
Q Consensus 153 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 185 (279)
+++|.+++..|..+..+++|++|++++|.+++.
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 888888877777788888888888888877653
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=2.5e-23 Score=186.84 Aligned_cols=133 Identities=23% Similarity=0.247 Sum_probs=65.7
Q ss_pred CcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcc-cccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 73 HRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSI-PSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
.+++.|++++|.+.+..|..++++++|++|++++|.+.+.+ +..+.++++|++|++++|.+++..|..+ ..+++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF-NGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT-TTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhc-cCcccCCEE
Confidence 45677777777766655555666666666666666554333 3345555555555555555553223322 444555555
Q ss_pred EeecccCCCCChhh--hhcCCcCceeeccCccCCCCCccc-ccCCCCcceeecccccc
Q 023644 152 SLSQNMLHGGIPST--LSNCTYLRILSLPYNNFLGAIPKE-IGNLTKLKLLYIGVNRL 206 (279)
Q Consensus 152 ~l~~n~l~~~~p~~--~~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~l~~n~l 206 (279)
++++|.+++..|.. +..+++|++|++++|.+++..|.. +..+++|++|++++|.+
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 55555444333322 444444444444444444333332 33344444444444433
No 30
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=2.2e-23 Score=186.87 Aligned_cols=178 Identities=23% Similarity=0.243 Sum_probs=137.7
Q ss_pred CcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCc------------------
Q 023644 73 HRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLS------------------ 134 (279)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~------------------ 134 (279)
.+++.|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l 167 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167 (440)
T ss_dssp SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCC
Confidence 45666666666666555555666666666666666665444444555555555555555554
Q ss_pred ------ccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccc
Q 023644 135 ------GQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQG 208 (279)
Q Consensus 135 ------~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 208 (279)
+.++...|..+++|++|++++|.++ .+| .+..+++|++|++++|.+++..|..|..+++|++|++++|.+++
T Consensus 168 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp CCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred CCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE
Confidence 2344444566777777788888776 555 47788999999999999998889999999999999999999998
Q ss_pred cccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 209 EIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 209 ~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
..+..+.++++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus 246 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence 88999999999999999999999988888999999999999998
No 31
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=4.1e-23 Score=185.67 Aligned_cols=178 Identities=23% Similarity=0.248 Sum_probs=147.8
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCch------------
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPA------------ 139 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~------------ 139 (279)
..+++.|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.++ .+|.
T Consensus 98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRL 176 (452)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEE
Confidence 456788888888888777777778888888888888877655556777777777777777766 4443
Q ss_pred -------------HHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccc
Q 023644 140 -------------NICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRL 206 (279)
Q Consensus 140 -------------~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l 206 (279)
..|..+++|++|++++|.++ .+| .+..+++|++|++++|.+++..|..|..+++|++|++++|.+
T Consensus 177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 254 (452)
T 3zyi_A 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254 (452)
T ss_dssp ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred eCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC
Confidence 33456677777777777776 344 477889999999999999998899999999999999999999
Q ss_pred cccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 207 QGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 207 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
++..|..+.++++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus 255 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 9888999999999999999999999888888999999999999998
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=4.5e-23 Score=185.20 Aligned_cols=89 Identities=19% Similarity=0.264 Sum_probs=49.5
Q ss_pred CcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCccccc--ccCCCCCCEEEccCCcCcccCchHHhhCCCCCcE
Q 023644 73 HRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSA--IFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEV 150 (279)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~--l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~ 150 (279)
.+++.|++++|.+.+..|..++++++|++|++++|.+++..|.. +..+++|++|++++|.+++..|..++..+++|++
T Consensus 79 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 158 (455)
T 3v47_A 79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV 158 (455)
T ss_dssp TTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCE
T ss_pred ccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccE
Confidence 45666666666666555555666666666666666665433333 5555566666666666554334443355555555
Q ss_pred EEeecccCCCC
Q 023644 151 LSLSQNMLHGG 161 (279)
Q Consensus 151 L~l~~n~l~~~ 161 (279)
|++++|.+++.
T Consensus 159 L~L~~n~l~~~ 169 (455)
T 3v47_A 159 LDLTFNKVKSI 169 (455)
T ss_dssp EECTTCCBSCC
T ss_pred EeCCCCccccc
Confidence 55555554433
No 33
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=8.1e-24 Score=180.60 Aligned_cols=179 Identities=17% Similarity=0.205 Sum_probs=158.5
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCccc-ccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIP-SAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEV 150 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~ 150 (279)
..+++.|++++|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+.. +..+++|++
T Consensus 77 ~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~ 154 (306)
T 2z66_A 77 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEV 154 (306)
T ss_dssp CSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT-TTTCTTCCE
T ss_pred ccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh-cccCcCCCE
Confidence 456888888888887 456678889999999999999986544 57889999999999999998554444 488999999
Q ss_pred EEeecccCCC-CChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCc
Q 023644 151 LSLSQNMLHG-GIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNK 229 (279)
Q Consensus 151 L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 229 (279)
|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+.++++|++|++++|.
T Consensus 155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 9999999986 578889999999999999999998888999999999999999999998777789999999999999999
Q ss_pred ccccchhhhhCCC-CCCEEEcccC
Q 023644 230 LQGMIINFLQFDS-SLCLLLYSFV 252 (279)
Q Consensus 230 l~~~~~~~l~~l~-~L~~L~l~~n 252 (279)
+++..|..+..++ +|++|++++|
T Consensus 235 l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 235 IMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp CCBCSSSSCCCCCTTCCEEECTTC
T ss_pred CcccCHHHHHhhhccCCEEEccCC
Confidence 9999999999885 9999999998
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=1e-22 Score=179.62 Aligned_cols=111 Identities=25% Similarity=0.294 Sum_probs=86.1
Q ss_pred CcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEE
Q 023644 73 HRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLS 152 (279)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~ 152 (279)
++++.|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.++ .+|..+|..+++|++|+
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEE
Confidence 45777788888777666667788888888888888888766777778888888888888887 77777667788888888
Q ss_pred eecccCCCCChhhhhcCCcCceeeccCccCCC
Q 023644 153 LSQNMLHGGIPSTLSNCTYLRILSLPYNNFLG 184 (279)
Q Consensus 153 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 184 (279)
+++|.+++..|..+..+++|++|++++|.+++
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 88888876666677777888888887777664
No 35
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=3.6e-23 Score=192.33 Aligned_cols=181 Identities=18% Similarity=0.087 Sum_probs=137.7
Q ss_pred CCCCCCCCC--ccceEec---------CCCCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCC
Q 023644 54 WNTSICFCN--WTGVTCD---------LHSHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYT 122 (279)
Q Consensus 54 w~~~~~~c~--w~gv~c~---------~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 122 (279)
|....|.|. +..+.|. ..+.+++.|++++|.+.+..|..|.++++|++|++++|.+++..|..|.++++
T Consensus 3 ~~~~~C~~~~~~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 82 (606)
T 3t6q_A 3 SSDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR 82 (606)
T ss_dssp ---CCCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTT
T ss_pred cccCceecccCCceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccc
Confidence 444455554 4456664 23457899999999999888888999999999999999998888888999999
Q ss_pred CCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecc
Q 023644 123 LKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIG 202 (279)
Q Consensus 123 L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 202 (279)
|++|++++|.+++..|..+ ..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 83 L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 161 (606)
T 3t6q_A 83 LDTLVLTANPLIFMAETAL-SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ 161 (606)
T ss_dssp CCEEECTTCCCSEECTTTT-SSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECC
T ss_pred cCeeeCCCCcccccChhhh-cccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcc
Confidence 9999999999984445444 888999999999999886657778888888999998888886443444457888888888
Q ss_pred cccccccccccccCCCCCC--EEeccCCcccccch
Q 023644 203 VNRLQGEIPREFGNLAELE--RMSLATNKLQGMII 235 (279)
Q Consensus 203 ~n~l~~~~p~~l~~l~~L~--~L~l~~n~l~~~~~ 235 (279)
+|.+++..|..+.++++|+ .+++++|.+++..|
T Consensus 162 ~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~ 196 (606)
T 3t6q_A 162 NNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP 196 (606)
T ss_dssp SSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECT
T ss_pred cCcccccChhhhhhhcccceeEEecCCCccCccCh
Confidence 8888876676677777776 66666666655443
No 36
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.90 E-value=1.1e-22 Score=166.64 Aligned_cols=165 Identities=27% Similarity=0.323 Sum_probs=142.3
Q ss_pred CCCCCCCCCccceEecCCCCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcC
Q 023644 54 WNTSICFCNWTGVTCDLHSHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQL 133 (279)
Q Consensus 54 w~~~~~~c~w~gv~c~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l 133 (279)
|....+.|+|+++.|. ++++. .+|..+. ++|++|++++|.+++..|..+..+++|++|++++|.+
T Consensus 12 ~~~~~~~Cs~~~v~c~------------~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l 76 (229)
T 3e6j_A 12 ACPSQCSCSGTTVDCR------------SKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL 76 (229)
T ss_dssp CCCTTCEEETTEEECT------------TSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCCCCEEeCCEeEcc------------CCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC
Confidence 6666788999998886 33444 4555443 8899999999999988888899999999999999999
Q ss_pred cccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeeccccccccccccc
Q 023644 134 SGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPRE 213 (279)
Q Consensus 134 ~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~ 213 (279)
+ .+|...|..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..
T Consensus 77 ~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 77 G-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred C-CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHH
Confidence 7 888877789999999999999999766667889999999999999998 78888899999999999999999776777
Q ss_pred ccCCCCCCEEeccCCcccccch
Q 023644 214 FGNLAELERMSLATNKLQGMII 235 (279)
Q Consensus 214 l~~l~~L~~L~l~~n~l~~~~~ 235 (279)
+..+++|+.|++++|.+.+..+
T Consensus 155 ~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTTCTTCCEEECTTSCBCTTBG
T ss_pred HhCCCCCCEEEeeCCCccCCcc
Confidence 8999999999999999987643
No 37
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.2e-22 Score=172.41 Aligned_cols=175 Identities=25% Similarity=0.306 Sum_probs=157.8
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
..+++.++++++++. .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.++ .++.. ..+++|++|
T Consensus 9 l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L~~L 82 (290)
T 1p9a_G 9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGTL 82 (290)
T ss_dssp STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCEE
T ss_pred cCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcCCEE
Confidence 457889999999998 5666554 78999999999999888889999999999999999998 56653 689999999
Q ss_pred EeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCccc
Q 023644 152 SLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQ 231 (279)
Q Consensus 152 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 231 (279)
++++|.++ .+|..+..+++|++|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|+.|++++|.++
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 99999998 78888999999999999999999877788999999999999999999777777899999999999999999
Q ss_pred ccchhhhhCCCCCCEEEcccCc
Q 023644 232 GMIINFLQFDSSLCLLLYSFVC 253 (279)
Q Consensus 232 ~~~~~~l~~l~~L~~L~l~~n~ 253 (279)
+..+..+..+++|++|++++|.
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCHHHhcCcCCCCEEECCCCc
Confidence 8777788899999999999983
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=5e-23 Score=193.88 Aligned_cols=177 Identities=22% Similarity=0.251 Sum_probs=157.6
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
+.+++.|++++|.+.+..+..+.++++|++|++++|.+++..|..+..+++|++|++++|.++ .+|+..|..+++|++|
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTEL 102 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEE
Confidence 468999999999999877778999999999999999999888999999999999999999998 7888766999999999
Q ss_pred EeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeeccccccccccccccc--CCCCCCEEeccCCc
Q 023644 152 SLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFG--NLAELERMSLATNK 229 (279)
Q Consensus 152 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~--~l~~L~~L~l~~n~ 229 (279)
++++|.+++..|..++.+++|++|++++|.+++..|..++++++|++|++++|.+++..+..+. .+++|++|++++|.
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 9999999977778899999999999999999988888899999999999999999987776654 56899999999999
Q ss_pred ccccchhhhhCCCCCCEEEc
Q 023644 230 LQGMIINFLQFDSSLCLLLY 249 (279)
Q Consensus 230 l~~~~~~~l~~l~~L~~L~l 249 (279)
+++..|..+..+++|+.|++
T Consensus 183 l~~~~~~~~~~l~~L~~L~l 202 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFL 202 (680)
T ss_dssp CCCBCTTGGGGSSEECEEEC
T ss_pred ccccChhhhhhhhhhhhhhc
Confidence 99988887776655444444
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=5.5e-23 Score=191.06 Aligned_cols=181 Identities=20% Similarity=0.121 Sum_probs=157.0
Q ss_pred CCCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcE
Q 023644 71 HSHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEV 150 (279)
Q Consensus 71 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~ 150 (279)
...+++.|++++|.+.+..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..+ ..+++|++
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~ 108 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF-SGLTSLEN 108 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSS-TTCTTCCE
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhc-CCcccCCE
Confidence 35679999999999998888899999999999999999998888899999999999999999984445555 89999999
Q ss_pred EEeecccCCCCChhhhhcCCcCceeeccCccCCC-CCcccccCCCCcceeecccccccccccccccCCCCCC----EEec
Q 023644 151 LSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLG-AIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELE----RMSL 225 (279)
Q Consensus 151 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~----~L~l 225 (279)
|++++|.+++..+..++.+++|++|++++|.+++ .+|..++++++|++|++++|.+++..|..+..+++|+ ++++
T Consensus 109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l 188 (606)
T 3vq2_A 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188 (606)
T ss_dssp EECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEEC
T ss_pred EEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeec
Confidence 9999999987776889999999999999999986 6799999999999999999999988787777666554 7999
Q ss_pred cCCcccccchhhhhCCCCCCEEEcccCc
Q 023644 226 ATNKLQGMIINFLQFDSSLCLLLYSFVC 253 (279)
Q Consensus 226 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 253 (279)
++|.+++..+..+... +|++|++++|.
T Consensus 189 ~~n~l~~~~~~~~~~~-~L~~L~L~~n~ 215 (606)
T 3vq2_A 189 SLNPIDFIQDQAFQGI-KLHELTLRGNF 215 (606)
T ss_dssp TTCCCCEECTTTTTTC-EEEEEEEESCC
T ss_pred cCCCcceeCcccccCc-eeeeeeccCCc
Confidence 9999887666655544 88888888873
No 40
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=1.4e-23 Score=196.40 Aligned_cols=176 Identities=23% Similarity=0.380 Sum_probs=147.2
Q ss_pred CCcEEEEEeCCCCCCcc-----------------CCccCC--CCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCc
Q 023644 72 SHRVTVLNISSLNLTGP-----------------IPAQLG--NLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQ 132 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~-----------------~~~~~~--~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 132 (279)
..+++.|++++|.+.+. +|+.++ ++++|++|++++|.+.+.+|..+..+++|++|++++|.
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 56799999999999985 899988 99999999999999999999999999999999999998
Q ss_pred -Ccc-cCchHHhhCC------CCCcEEEeecccCCCCChh--hhhcCCcCceeeccCccCCCCCcccccCCCCcceeecc
Q 023644 133 -LSG-QIPANICSYL------PFLEVLSLSQNMLHGGIPS--TLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIG 202 (279)
Q Consensus 133 -l~~-~lp~~~~~~l------~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 202 (279)
++| .+|..+ ..+ ++|++|++++|.++ .+|. .++.+++|++|++++|.++|.+| .++.+++|++|+++
T Consensus 285 ~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~ 361 (636)
T 4eco_A 285 GISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA 361 (636)
T ss_dssp TSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred CCccccchHHH-HhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence 887 788877 554 88999999999998 8888 88899999999999999888888 77778888888888
Q ss_pred cccccccccccccCCCC-CCEEeccCCcccccchhhhhCCC--CCCEEEcccC
Q 023644 203 VNRLQGEIPREFGNLAE-LERMSLATNKLQGMIINFLQFDS--SLCLLLYSFV 252 (279)
Q Consensus 203 ~n~l~~~~p~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~l~~n 252 (279)
+|.++ .+|..+.++++ |++|++++|.++ .+|..+..++ +|++|++++|
T Consensus 362 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 362 YNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYN 412 (636)
T ss_dssp SSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSS
T ss_pred CCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCC
Confidence 88887 77777777777 888888777777 5666555443 6777777766
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=1.7e-22 Score=178.10 Aligned_cols=179 Identities=20% Similarity=0.177 Sum_probs=149.7
Q ss_pred CcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEE
Q 023644 73 HRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLS 152 (279)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~ 152 (279)
.+++.++++++.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+++..+..+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEE
Confidence 56889999999988654455788999999999999999777779999999999999999998 56655558999999999
Q ss_pred eecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeeccccccccccc---------------------
Q 023644 153 LSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIP--------------------- 211 (279)
Q Consensus 153 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p--------------------- 211 (279)
+++|.++...+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++...
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~ 203 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 203 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCC
Confidence 99999994444446899999999999999998888889999999999999998874311
Q ss_pred --------------------------------------ccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 212 --------------------------------------REFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 212 --------------------------------------~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
..+.++++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 204 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (390)
T 3o6n_A 204 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282 (390)
T ss_dssp CSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS
T ss_pred CCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC
Confidence 12445677888888888888887888888888888888886
No 42
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=1.9e-22 Score=187.49 Aligned_cols=179 Identities=22% Similarity=0.236 Sum_probs=121.6
Q ss_pred CcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEE
Q 023644 73 HRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLS 152 (279)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~ 152 (279)
++++.|++++|.+. .+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.+|...+..+++|++|+
T Consensus 278 ~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 278 SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356 (606)
T ss_dssp TTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred cCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence 45666666666666 45666666677777777777766555666666677777777777666666665556677777777
Q ss_pred eecccCCCCC--hhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeeccccccccccccc-ccCCCCCCEEeccCCc
Q 023644 153 LSQNMLHGGI--PSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPRE-FGNLAELERMSLATNK 229 (279)
Q Consensus 153 l~~n~l~~~~--p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~l~~n~ 229 (279)
+++|.+++.. |..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|.. +.++++|++|++++|.
T Consensus 357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp CCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred CCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc
Confidence 7777776443 556667777777777777776666666767777777777777776555433 6667777777777777
Q ss_pred ccccchhhhhCCCCCCEEEcccC
Q 023644 230 LQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 230 l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
+++..|..++.+++|++|++++|
T Consensus 437 l~~~~~~~~~~l~~L~~L~L~~n 459 (606)
T 3t6q_A 437 LDISSEQLFDGLPALQHLNLQGN 459 (606)
T ss_dssp CBTTCTTTTTTCTTCCEEECTTC
T ss_pred cCCcCHHHHhCCCCCCEEECCCC
Confidence 77666666777777777777766
No 43
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=7.3e-22 Score=165.88 Aligned_cols=171 Identities=25% Similarity=0.242 Sum_probs=151.4
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
.++++.|++++|.+.+. +.+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|++|
T Consensus 62 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYL 138 (272)
T ss_dssp CTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEE
Confidence 56799999999999863 47899999999999999999877777899999999999999998 6776666899999999
Q ss_pred EeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCccc
Q 023644 152 SLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQ 231 (279)
Q Consensus 152 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 231 (279)
++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++++|.+.
T Consensus 139 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 99999999777777889999999999999999877777899999999999999999888888999999999999999988
Q ss_pred ccchhhhhCCCCCCEEEcccC
Q 023644 232 GMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 232 ~~~~~~l~~l~~L~~L~l~~n 252 (279)
+. +++|+++++..|
T Consensus 219 ~~-------~~~l~~l~~~~n 232 (272)
T 3rfs_A 219 CT-------CPGIRYLSEWIN 232 (272)
T ss_dssp CC-------TTTTHHHHHHHH
T ss_pred cc-------CcHHHHHHHHHH
Confidence 65 445677776655
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=6.4e-23 Score=178.60 Aligned_cols=180 Identities=18% Similarity=0.190 Sum_probs=156.6
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCch-HHhhCCCCCcE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPA-NICSYLPFLEV 150 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~-~~~~~l~~L~~ 150 (279)
..+++.|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.++ .+|. ..+..+++|++
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQI 153 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCE
T ss_pred CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcE
Confidence 568999999999999888888999999999999999999655555899999999999999998 7887 55589999999
Q ss_pred EEeeccc-CCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCc
Q 023644 151 LSLSQNM-LHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNK 229 (279)
Q Consensus 151 L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 229 (279)
|++++|. ++...+..+..+++|++|++++|.+++..|..+..+++|++|++++|.++...+..+..+++|++|++++|.
T Consensus 154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred EECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc
Confidence 9999994 765667789999999999999999998889999999999999999999874433345568899999999998
Q ss_pred cccc-------------------------------chhhhhCCCCCCEEEcccC
Q 023644 230 LQGM-------------------------------IINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 230 l~~~-------------------------------~~~~l~~l~~L~~L~l~~n 252 (279)
+++. +|+.+..+++|++|++++|
T Consensus 234 l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287 (353)
T ss_dssp CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence 8763 4566788999999999998
No 45
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=3.8e-23 Score=177.16 Aligned_cols=176 Identities=20% Similarity=0.220 Sum_probs=127.8
Q ss_pred CCcEEEEEeCCCCCCccCCccC--CCCCCCCEEECCCCcCCCcccccccCC-----CCCCEEEccCCcCcccCchHHhhC
Q 023644 72 SHRVTVLNISSLNLTGPIPAQL--GNLSSLQSLNLSCNRLSGSIPSAIFTI-----YTLKNVSLHKNQLSGQIPANICSY 144 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~p~~l~~l-----~~L~~L~l~~n~l~~~lp~~~~~~ 144 (279)
..+++.|++++|.+.+.+|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.++ .++...+..
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~-~~~~~~~~~ 171 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVRV 171 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCC-CCCTTTCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCc-cchHHHhcc
Confidence 4568888888888887777765 7788888888888888865 7666665 78888888888887 444333477
Q ss_pred CCCCcEEEeecccCCCC--Chhhh--hcCCcCceeeccCccCCC--CCc-ccccCCCCcceeeccccccccccc-ccccC
Q 023644 145 LPFLEVLSLSQNMLHGG--IPSTL--SNCTYLRILSLPYNNFLG--AIP-KEIGNLTKLKLLYIGVNRLQGEIP-REFGN 216 (279)
Q Consensus 145 l~~L~~L~l~~n~l~~~--~p~~~--~~l~~L~~L~l~~n~l~~--~~p-~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~ 216 (279)
+++|++|++++|.+.+. .|..+ ..+++|++|++++|.+++ .++ ..+..+++|++|++++|.+++.+| ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 88888888888887654 34444 677888888888887773 222 233466788888888888877664 44566
Q ss_pred CCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 217 LAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 217 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
+++|++|++++|.++ .+|..+. ++|++|++++|
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N 284 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYN 284 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSS
T ss_pred cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCC
Confidence 788888888888887 5565554 67888888877
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=7.1e-22 Score=170.54 Aligned_cols=176 Identities=20% Similarity=0.222 Sum_probs=144.6
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
..+++.|++++|.+.+..|..++++++|++|++++|.++ .+|..+. ++|++|++++|.++ .+|...+..+++|++|
T Consensus 77 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L 152 (332)
T 2ft3_A 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCI 152 (332)
T ss_dssp CTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEE
T ss_pred CCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEE
Confidence 567999999999999888889999999999999999988 5666554 78999999999988 6777666888889988
Q ss_pred EeecccCCC--CChhhhhcC--------------------CcCceeeccCccCCCCCcccccCCCCcceeeccccccccc
Q 023644 152 SLSQNMLHG--GIPSTLSNC--------------------TYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGE 209 (279)
Q Consensus 152 ~l~~n~l~~--~~p~~~~~l--------------------~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 209 (279)
++++|.++. ..|..+..+ ++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 153 ~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~ 232 (332)
T 2ft3_A 153 EMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232 (332)
T ss_dssp ECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred ECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC
Confidence 888888752 334433332 4677777778877777777888889999999999999887
Q ss_pred ccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 210 IPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 210 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
.+..+..+++|++|++++|.++ .+|..+..+++|++|++++|
T Consensus 233 ~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 233 ENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp CTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSS
T ss_pred ChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCC
Confidence 7778888999999999999988 67777888999999999887
No 47
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=8.6e-23 Score=189.74 Aligned_cols=179 Identities=20% Similarity=0.154 Sum_probs=89.8
Q ss_pred CcEEEEEeCCCCCCcc--CCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcE
Q 023644 73 HRVTVLNISSLNLTGP--IPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEV 150 (279)
Q Consensus 73 ~~l~~L~l~~~~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~ 150 (279)
++++.|++++|.+.+. ++..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|...+..+++|++
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 3455555555555433 2444444555555555555544 233444555555555555555553333223345555555
Q ss_pred EEeecccCCCCChhhhhcCCcCceeeccCccCCC-CCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCc
Q 023644 151 LSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLG-AIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNK 229 (279)
Q Consensus 151 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 229 (279)
|++++|.+++..|..+..+++|++|++++|.+++ .+|..++.+++|++|++++|.+++..|..+.++++|++|++++|.
T Consensus 429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence 5555555554445555555555555555555544 234445555555555555555554444455555555555555555
Q ss_pred ccccchhhhhCCCCCCEEEcccC
Q 023644 230 LQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 230 l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
+++.+|..++.+++|++|++++|
T Consensus 509 l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 509 LLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp CSCEEGGGTTTCTTCCEEECTTS
T ss_pred CCCcCHHHccCCCcCCEEECCCC
Confidence 55554555555555555555544
No 48
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.88 E-value=1.1e-21 Score=159.84 Aligned_cols=155 Identities=17% Similarity=0.210 Sum_probs=134.3
Q ss_pred EEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCccc-ccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeec
Q 023644 77 VLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIP-SAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQ 155 (279)
Q Consensus 77 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~ 155 (279)
.++++++.+. .+|..+. ..+++|++++|.+++..+ ..+..+++|++|++++|.++ .++...|..+++|++|++++
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECCC
Confidence 5666778887 4666553 457899999999997644 45789999999999999998 66665568999999999999
Q ss_pred ccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcccccch
Q 023644 156 NMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMII 235 (279)
Q Consensus 156 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~ 235 (279)
|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 99998878889999999999999999998889999999999999999999998889999999999999999999987543
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=1.9e-21 Score=167.64 Aligned_cols=176 Identities=19% Similarity=0.221 Sum_probs=132.6
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
..+++.|++++|.+.+..|..++.+++|++|++++|.++ .+|..+. ++|++|++++|.++ .++...+..+++|++|
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L 150 (330)
T 1xku_A 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVV 150 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEE
Confidence 467999999999999887888999999999999999887 4555443 56777777777776 4555444666666666
Q ss_pred EeecccCCC--CChhhhhcCC---------------------cCceeeccCccCCCCCcccccCCCCcceeecccccccc
Q 023644 152 SLSQNMLHG--GIPSTLSNCT---------------------YLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQG 208 (279)
Q Consensus 152 ~l~~n~l~~--~~p~~~~~l~---------------------~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 208 (279)
++++|.++. ..+..+..++ +|++|++++|.+++..|..+..+++|++|++++|.+++
T Consensus 151 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred ECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence 666666542 3344444443 45555666666665667778888899999999999987
Q ss_pred cccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 209 EIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 209 ~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
..+..+.++++|++|++++|.++ .+|..+..+++|++|++++|
T Consensus 231 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 231 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSS
T ss_pred eChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCC
Confidence 77778888999999999999888 66777888899999999887
No 50
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=5.7e-23 Score=176.06 Aligned_cols=176 Identities=18% Similarity=0.173 Sum_probs=150.9
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCC-----CCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccC--chH-Hhh
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNL-----SSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQI--PAN-ICS 143 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~l--p~~-~~~ 143 (279)
.++++.|++++|.+.+. |..++.+ ++|++|++++|.+++..|..+..+++|++|++++|.+.+.+ +.. .+.
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 56799999999999977 7777766 89999999999999888899999999999999999987653 333 237
Q ss_pred CCCCCcEEEeecccCCC--CCh-hhhhcCCcCceeeccCccCCCCCc-ccccCCCCcceeecccccccccccccccCCCC
Q 023644 144 YLPFLEVLSLSQNMLHG--GIP-STLSNCTYLRILSLPYNNFLGAIP-KEIGNLTKLKLLYIGVNRLQGEIPREFGNLAE 219 (279)
Q Consensus 144 ~l~~L~~L~l~~n~l~~--~~p-~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 219 (279)
.+++|++|++++|.+++ .++ ..+..+++|++|++++|.+++..| ..+..+++|++|++++|.++ .+|..+. ++
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~ 275 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AK 275 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SE
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CC
Confidence 88999999999999983 223 334578999999999999998775 45667899999999999999 8888776 89
Q ss_pred CCEEeccCCcccccchhhhhCCCCCCEEEcccCc
Q 023644 220 LERMSLATNKLQGMIINFLQFDSSLCLLLYSFVC 253 (279)
Q Consensus 220 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 253 (279)
|++|++++|.+++. |. +..+++|++|++++|.
T Consensus 276 L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 276 LSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp EEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCT
T ss_pred ceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCC
Confidence 99999999999987 55 8899999999999983
No 51
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.87 E-value=1.1e-21 Score=159.82 Aligned_cols=160 Identities=26% Similarity=0.310 Sum_probs=124.1
Q ss_pred CCCCCCccceEecCCCCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCccc
Q 023644 57 SICFCNWTGVTCDLHSHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQ 136 (279)
Q Consensus 57 ~~~~c~w~gv~c~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 136 (279)
..|.|.|..+.| +++++. .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.++ .
T Consensus 7 ~~C~C~~~~v~c------------~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~ 70 (220)
T 2v9t_B 7 AACTCSNNIVDC------------RGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-E 70 (220)
T ss_dssp TTSEEETTEEEC------------TTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-E
T ss_pred CCCEECCCEEEc------------CCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-C
Confidence 446666665555 455666 4555444 67888999999888666667888888999999999888 4
Q ss_pred CchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccC
Q 023644 137 IPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGN 216 (279)
Q Consensus 137 lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~ 216 (279)
+++..|..+++|++|++++|.++...+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+..
T Consensus 71 ~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 150 (220)
T 2v9t_B 71 LAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150 (220)
T ss_dssp ECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred cCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhC
Confidence 43344488888888888888888555555678888888888888888877888888888889999998888777777888
Q ss_pred CCCCCEEeccCCcccc
Q 023644 217 LAELERMSLATNKLQG 232 (279)
Q Consensus 217 l~~L~~L~l~~n~l~~ 232 (279)
+++|++|++++|.+..
T Consensus 151 l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 151 LRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CTTCCEEECCSSCEEC
T ss_pred CCCCCEEEeCCCCcCC
Confidence 8888899998888765
No 52
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=9.6e-22 Score=177.74 Aligned_cols=181 Identities=18% Similarity=0.155 Sum_probs=126.1
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
..+++.|++++|.+.+..|..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++ +++..|..+++|++|
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI-LLDYMFQDLYNLKSL 133 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcccc-CChhHccccccCCEE
Confidence 4567888888888877777777888888888888887775555556777788888888887773 333333677777777
Q ss_pred EeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCC-------------
Q 023644 152 SLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLA------------- 218 (279)
Q Consensus 152 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~------------- 218 (279)
++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+.+++
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~ 213 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc
Confidence 7777777766666677777777777777777655555566666666666666666654444444444
Q ss_pred -----------CCCEEeccCCcccccchhhhhCCCCCCEEEcccCc
Q 023644 219 -----------ELERMSLATNKLQGMIINFLQFDSSLCLLLYSFVC 253 (279)
Q Consensus 219 -----------~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 253 (279)
+|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 214 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259 (477)
T ss_dssp CEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC
T ss_pred cccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc
Confidence 55566666666766555678888999999998873
No 53
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.87 E-value=9.6e-22 Score=171.78 Aligned_cols=172 Identities=25% Similarity=0.233 Sum_probs=135.3
Q ss_pred EEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCccccccc-CCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeec
Q 023644 77 VLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIF-TIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQ 155 (279)
Q Consensus 77 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~ 155 (279)
.++++++++. .+|..+. ..++.|++++|.+++..+..+. .+++|++|++++|.++ .++...|..+++|++|++++
T Consensus 22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCC
Confidence 4566677777 3565443 4588899999988876666666 8889999999999988 66665558888999999999
Q ss_pred ccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccc---cCCCCCCEEeccCCcccc
Q 023644 156 NMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREF---GNLAELERMSLATNKLQG 232 (279)
Q Consensus 156 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l---~~l~~L~~L~l~~n~l~~ 232 (279)
|.+++..+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+ .++++|+.|++++|.+++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99886666678888899999999998887778888888899999999999885444444 568889999999999988
Q ss_pred cchhhhhCCCC--CCEEEcccC
Q 023644 233 MIINFLQFDSS--LCLLLYSFV 252 (279)
Q Consensus 233 ~~~~~l~~l~~--L~~L~l~~n 252 (279)
..+..+..+++ ++.|++++|
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSS
T ss_pred cCHHHhhhccHhhcceEEecCC
Confidence 77777888876 478888887
No 54
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=2.4e-22 Score=192.65 Aligned_cols=175 Identities=21% Similarity=0.346 Sum_probs=156.9
Q ss_pred CCcEEEEEeCCCCCCc-----------------cCCccCC--CCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCc
Q 023644 72 SHRVTVLNISSLNLTG-----------------PIPAQLG--NLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQ 132 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~-----------------~~~~~~~--~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 132 (279)
..+++.|++++|.+.+ .+|+.++ ++++|++|++++|.+.+.+|..+..+++|++|++++|.
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 5689999999999998 3899988 99999999999999999999999999999999999998
Q ss_pred -Ccc-cCchHHhhC-------CCCCcEEEeecccCCCCChh--hhhcCCcCceeeccCccCCCCCcccccCCCCcceeec
Q 023644 133 -LSG-QIPANICSY-------LPFLEVLSLSQNMLHGGIPS--TLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYI 201 (279)
Q Consensus 133 -l~~-~lp~~~~~~-------l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 201 (279)
++| .+|..+ .. +++|++|++++|.++ .+|. .++.+++|++|++++|.++ .+| .++.+++|++|++
T Consensus 527 ~lsg~~iP~~i-~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 527 GISAAQLKADW-TRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp TSCHHHHHHHH-HHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEEC
T ss_pred CcccccchHHH-HhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEEC
Confidence 988 788876 44 459999999999999 8888 8999999999999999998 888 8899999999999
Q ss_pred ccccccccccccccCCCC-CCEEeccCCcccccchhhhhCCCC--CCEEEcccC
Q 023644 202 GVNRLQGEIPREFGNLAE-LERMSLATNKLQGMIINFLQFDSS--LCLLLYSFV 252 (279)
Q Consensus 202 ~~n~l~~~~p~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~l~~n 252 (279)
++|.++ .+|..+.++++ |+.|++++|.++ .+|..+..++. |+.|++++|
T Consensus 603 s~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 603 DYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp CSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSS
T ss_pred cCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCC
Confidence 999999 88988999998 999999999998 67777766544 888888887
No 55
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=5.2e-22 Score=191.28 Aligned_cols=189 Identities=22% Similarity=0.124 Sum_probs=162.8
Q ss_pred CCccceEecCCCCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcc-cccccCCCCCCEEEccCCcCcccCch
Q 023644 61 CNWTGVTCDLHSHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSI-PSAIFTIYTLKNVSLHKNQLSGQIPA 139 (279)
Q Consensus 61 c~w~gv~c~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~lp~ 139 (279)
+.|..|.+ .+.+++.||+++|.+.+..+..+.++++|++|++++|...+.+ |..|.++++|++|++++|.+++..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 45666655 4678999999999999888899999999999999999766565 78899999999999999999854455
Q ss_pred HHhhCCCCCcEEEeecccCCCCChhh--hhcCCcCceeeccCccCCCCCc-ccccCCCCcceeecccccccccccccccC
Q 023644 140 NICSYLPFLEVLSLSQNMLHGGIPST--LSNCTYLRILSLPYNNFLGAIP-KEIGNLTKLKLLYIGVNRLQGEIPREFGN 216 (279)
Q Consensus 140 ~~~~~l~~L~~L~l~~n~l~~~~p~~--~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~ 216 (279)
.+ ..+++|++|++++|.+++..|.. +..+++|++|++++|.+++..+ ..++++++|++|++++|.+++..|..+..
T Consensus 92 ~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 92 AF-QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp SS-CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred Hc-cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 55 89999999999999998767665 8899999999999999987655 57899999999999999999888888887
Q ss_pred C--CCCCEEeccCCcccccchhhhhCCCC------CCEEEcccC
Q 023644 217 L--AELERMSLATNKLQGMIINFLQFDSS------LCLLLYSFV 252 (279)
Q Consensus 217 l--~~L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~l~~n 252 (279)
+ ++|+.|++++|.+.+..|..++.+++ |+.|+++.|
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCC
Confidence 7 89999999999999888877666655 999999887
No 56
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=2.4e-22 Score=185.19 Aligned_cols=180 Identities=19% Similarity=0.215 Sum_probs=146.7
Q ss_pred CCcEEEEEeCCCCCCccC--CccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCc
Q 023644 72 SHRVTVLNISSLNLTGPI--PAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLE 149 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~ 149 (279)
.++++.|++++|.+.+.. +..+..+++|++|++++|.+++. +..+..+++|++|++++|.+.+..|...+..+++|+
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 424 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence 345777777777776442 45566777888888888877743 444788888888888888887555545557888999
Q ss_pred EEEeecccCCCCChhhhhcCCcCceeeccCccCC-CCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCC
Q 023644 150 VLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFL-GAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATN 228 (279)
Q Consensus 150 ~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 228 (279)
+|++++|.+++..|..+..+++|++|++++|.++ +.+|..+..+++|++|++++|.+++..|..+.++++|++|++++|
T Consensus 425 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 9999999888788888888999999999999887 568888888999999999999999888888999999999999999
Q ss_pred cccccchhhhhCCCCCCEEEcccC
Q 023644 229 KLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 229 ~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
.+++.++..+..+++|++|++++|
T Consensus 505 ~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 505 QLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCCCHHHhhcccCCcEEEecCC
Confidence 999888888888999999999987
No 57
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.87 E-value=2.5e-21 Score=157.60 Aligned_cols=150 Identities=20% Similarity=0.192 Sum_probs=136.6
Q ss_pred CEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccC
Q 023644 100 QSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPY 179 (279)
Q Consensus 100 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 179 (279)
+.+++++|.++ .+|..+. ..+++|++++|.+++..+...|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 58999999998 5777653 46789999999999544666668999999999999999977777899999999999999
Q ss_pred ccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 180 NNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 180 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
|.+++..+..|..+++|++|++++|.+++..|..+.++++|++|++++|.+++..|..+..+++|+.|++++|
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 9999888888999999999999999999888999999999999999999999999999999999999999998
No 58
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=178.68 Aligned_cols=84 Identities=24% Similarity=0.243 Sum_probs=62.3
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcc-cCchHHhhCCCCCcE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSG-QIPANICSYLPFLEV 150 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~lp~~~~~~l~~L~~ 150 (279)
..+++.|++++|.+.+..|..++++++|++|++++|.++ .+|.. .+++|++|++++|.+++ .+|..+ +.+++|++
T Consensus 44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~-~~l~~L~~ 119 (520)
T 2z7x_B 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEF-GNMSQLKF 119 (520)
T ss_dssp CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGG-GGCTTCCE
T ss_pred cccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhh-ccCCcceE
Confidence 456778888888877766777788888888888888877 45555 67788888888888874 355555 77788888
Q ss_pred EEeecccCC
Q 023644 151 LSLSQNMLH 159 (279)
Q Consensus 151 L~l~~n~l~ 159 (279)
|++++|.++
T Consensus 120 L~L~~n~l~ 128 (520)
T 2z7x_B 120 LGLSTTHLE 128 (520)
T ss_dssp EEEEESSCC
T ss_pred EEecCcccc
Confidence 877777664
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=4.8e-22 Score=180.34 Aligned_cols=173 Identities=21% Similarity=0.175 Sum_probs=102.8
Q ss_pred cEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchH-------------
Q 023644 74 RVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPAN------------- 140 (279)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~------------- 140 (279)
+++.|++++|.+.+..|..+..+++|++|++++|.+++..| +..+++|++|++++|.++ .+|..
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~~~~L~~L~L~~N~l 111 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAANNNI 111 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEECTTCCEEECCSSCC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCCCCCcCEEECcCCcC
Confidence 56666666666665555566666666666666666654433 555556655555555554 22210
Q ss_pred ---HhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCccccc-CCCCcceeecccccccccccccccC
Q 023644 141 ---ICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIG-NLTKLKLLYIGVNRLQGEIPREFGN 216 (279)
Q Consensus 141 ---~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~l~~n~l~~~~p~~l~~ 216 (279)
....+++|++|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|++|++++|.+++. | ....
T Consensus 112 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~ 189 (487)
T 3oja_A 112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVV 189 (487)
T ss_dssp CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCC
T ss_pred CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-cccc
Confidence 002245666666666666665566666667777777777777666665554 566666666666666644 2 2234
Q ss_pred CCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 217 LAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 217 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
+++|+.|++++|.+++.+|. +..+++|+.|++++|
T Consensus 190 l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 190 FAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNN 224 (487)
T ss_dssp CTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTS
T ss_pred CCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCC
Confidence 66666666666666654443 556666666666665
No 60
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=1.7e-21 Score=180.95 Aligned_cols=179 Identities=20% Similarity=0.177 Sum_probs=153.8
Q ss_pred CcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEE
Q 023644 73 HRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLS 152 (279)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~ 152 (279)
.+++.++++++.+....+..+..+++|++|++++|.+++..|..+..+++|++|++++|.++ .+|+..|+.+++|++|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEEE
Confidence 45788999999998665566788999999999999999888889999999999999999999 56666669999999999
Q ss_pred eecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeeccccccccccc---------------------
Q 023644 153 LSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIP--------------------- 211 (279)
Q Consensus 153 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p--------------------- 211 (279)
+++|.+++..+..+..+++|++|++++|.+++..|..++.+++|++|++++|.+++..+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~ 209 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence 99999995555557899999999999999998888889999999999999998875321
Q ss_pred --------------------------------------ccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 212 --------------------------------------REFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 212 --------------------------------------~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
..+.++++|+.|++++|.+++.+|..++.+++|+.|++++|
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 288 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288 (597)
T ss_dssp CTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS
T ss_pred CchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC
Confidence 22556678888888888888888888888888888888887
No 61
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=1.7e-21 Score=177.86 Aligned_cols=172 Identities=20% Similarity=0.237 Sum_probs=140.7
Q ss_pred EEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcc--cCchHHhhCCCCCcEEE
Q 023644 75 VTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSG--QIPANICSYLPFLEVLS 152 (279)
Q Consensus 75 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~--~lp~~~~~~l~~L~~L~ 152 (279)
++.|++++|.+.... ....+++|++|++++|.+++..|..+..+++|++|++++|.+++ .+|..+ ..+++|++|+
T Consensus 304 L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~-~~l~~L~~L~ 380 (520)
T 2z7x_B 304 IKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT-TQMKSLQQLD 380 (520)
T ss_dssp CSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH-TTCTTCCEEE
T ss_pred eeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHH-hhCCCCCEEE
Confidence 444444444443211 12678899999999999998889999999999999999999984 344444 8899999999
Q ss_pred eecccCCCCChhh-hhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCccc
Q 023644 153 LSQNMLHGGIPST-LSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQ 231 (279)
Q Consensus 153 l~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 231 (279)
+++|.+++.+|.. +..+++|++|++++|.+++.+|..+. ++|++|++++|+++ .+|..+.++++|++|++++|.++
T Consensus 381 Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp CCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence 9999998757764 77889999999999999888877664 78999999999998 88888889999999999999999
Q ss_pred ccchhhhhCCCCCCEEEcccC
Q 023644 232 GMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 232 ~~~~~~l~~l~~L~~L~l~~n 252 (279)
+..+..+..+++|++|++++|
T Consensus 458 ~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 458 SVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp CCCTTTTTTCTTCCEEECCSS
T ss_pred ccCHHHhccCCcccEEECcCC
Confidence 644445889999999999998
No 62
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=9.7e-22 Score=181.15 Aligned_cols=179 Identities=18% Similarity=0.132 Sum_probs=160.5
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
..+++.|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.++ .+++..|..+++|++|
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 105 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCccccccc
Confidence 557999999999999888889999999999999999999877888999999999999999998 6665556999999999
Q ss_pred EeecccCCCCChhhhhcCCcCceeeccCccCCC-CCcccccCCCCcceeecccccccccccccccCCCCC----CEEecc
Q 023644 152 SLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLG-AIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAEL----ERMSLA 226 (279)
Q Consensus 152 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L----~~L~l~ 226 (279)
++++|.+++..+..++.+++|++|++++|.+++ .+|..++++++|++|++++|.+++..|..+..+++| +.++++
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 999999986555578999999999999999987 579999999999999999999998888888888888 899999
Q ss_pred CCcccccchhhhhCCCCCCEEEcccC
Q 023644 227 TNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 227 ~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
+|.+++..|..+... +|++|+++.|
T Consensus 186 ~n~l~~~~~~~~~~~-~L~~L~l~~n 210 (570)
T 2z63_A 186 LNPMNFIQPGAFKEI-RLHKLTLRNN 210 (570)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESC
T ss_pred CCCceecCHHHhccC-cceeEecccc
Confidence 999999888777765 7999999886
No 63
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=4.5e-21 Score=161.21 Aligned_cols=171 Identities=26% Similarity=0.294 Sum_probs=144.5
Q ss_pred EEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeeccc
Q 023644 78 LNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNM 157 (279)
Q Consensus 78 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~ 157 (279)
++..+.++. .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.++ .++...|..+++|++|++++|.
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCc
Confidence 344455555 4565554 57999999999999777778999999999999999998 6766656899999999999999
Q ss_pred CCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeeccccccccc-ccccccCCCCCCEEeccCCcccccchh
Q 023644 158 LHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGE-IPREFGNLAELERMSLATNKLQGMIIN 236 (279)
Q Consensus 158 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~~ 236 (279)
+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. +|..+.++++|++|++++|.+++..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 9977778899999999999999999977777899999999999999999863 689999999999999999999988777
Q ss_pred hhhCCCCCC----EEEcccC
Q 023644 237 FLQFDSSLC----LLLYSFV 252 (279)
Q Consensus 237 ~l~~l~~L~----~L~l~~n 252 (279)
.+..+++|+ +|++++|
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSS
T ss_pred HhhhhhhccccceeeecCCC
Confidence 666555555 6666665
No 64
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=3.1e-21 Score=177.92 Aligned_cols=62 Identities=19% Similarity=0.159 Sum_probs=39.0
Q ss_pred cCCCCcceeecccccccccccccccCCCCCCEEeccCCcccc--cchhhhhCCCCCCEEEcccC
Q 023644 191 GNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQG--MIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 191 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n 252 (279)
..+++|++|++++|.+++.+|..+.++++|++|++++|.+++ .+|..++.+++|++|++++|
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N 413 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC
Confidence 344556666666666666566666666666666666666665 23455666666777777665
No 65
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=1.3e-21 Score=182.09 Aligned_cols=179 Identities=18% Similarity=0.148 Sum_probs=140.8
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
+..++.|||++|.|++..+..|.++++|++|++++|++++..|.+|.++++|++|++++|+++ .+|...|..+++|++|
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 129 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEE
Confidence 457899999999999777778999999999999999998777778889999999999999998 7887777899999999
Q ss_pred EeecccCCCCChhhhhcCCcCceeeccCccCCC-CCcccccCCCCcceeecccccccccccccccCCCCC----CEEecc
Q 023644 152 SLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLG-AIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAEL----ERMSLA 226 (279)
Q Consensus 152 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L----~~L~l~ 226 (279)
++++|.+++..+..++.+++|++|++++|.+++ ..|..++.+++|++|++++|.+++..|..+..+.++ ..++++
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence 999999986666678899999999999998875 467788888999999999999987777776655443 356777
Q ss_pred CCcccccchhhhhCCCCCCEEEcccC
Q 023644 227 TNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 227 ~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
.|.++...+..+. ...+..+++..|
T Consensus 210 ~n~l~~i~~~~~~-~~~~~~l~l~~n 234 (635)
T 4g8a_A 210 LNPMNFIQPGAFK-EIRLHKLTLRNN 234 (635)
T ss_dssp TCCCCEECTTTTT-TCEEEEEEEESC
T ss_pred cCcccccCccccc-chhhhhhhhhcc
Confidence 7777654443332 223444444444
No 66
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=4.8e-21 Score=155.98 Aligned_cols=149 Identities=21% Similarity=0.231 Sum_probs=136.1
Q ss_pred CEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccC
Q 023644 100 QSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPY 179 (279)
Q Consensus 100 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 179 (279)
+.++++++.++ .+|..+. ++++.|++++|.++ .++...|..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 57899999988 6777654 68999999999998 67776668999999999999999988899999999999999999
Q ss_pred ccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 180 NNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 180 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
|.++...+..|..+++|++|++++|.+++..|..+.++++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 9999666666889999999999999999888999999999999999999999988888999999999999998
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1.1e-20 Score=161.67 Aligned_cols=166 Identities=24% Similarity=0.315 Sum_probs=142.6
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
..+++.|++++|.+.+. ++ +..+++|++|++++|.+++ ++ .+..+++|++|++++|.++ .++. +..+++|++|
T Consensus 62 l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L 134 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQIT-DVTP--LAGLSNLQVL 134 (308)
T ss_dssp CTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCC-CCGG--GTTCTTCCEE
T ss_pred cCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCC-Cchh--hcCCCCCCEE
Confidence 46799999999999854 44 8999999999999999985 33 6888999999999999998 5665 4889999999
Q ss_pred EeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCccc
Q 023644 152 SLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQ 231 (279)
Q Consensus 152 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 231 (279)
++++|.+++. +. +..+++|++|++++|.+++. +. +..+++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 135 ~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 135 YLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp ECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCcC-cc-ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccC
Confidence 9999999854 43 88999999999999999864 33 8889999999999999985543 888999999999999999
Q ss_pred ccchhhhhCCCCCCEEEcccC
Q 023644 232 GMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 232 ~~~~~~l~~l~~L~~L~l~~n 252 (279)
+..+ +..+++|+.|++++|
T Consensus 209 ~~~~--l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 209 DVSP--LANTSNLFIVTLTNQ 227 (308)
T ss_dssp BCGG--GTTCTTCCEEEEEEE
T ss_pred cccc--ccCCCCCCEEEccCC
Confidence 7664 789999999999987
No 68
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=4.9e-21 Score=180.26 Aligned_cols=186 Identities=22% Similarity=0.246 Sum_probs=138.5
Q ss_pred CCcEEEEEeCCCCCCccCC-ccCCCCCCCCEEECCCCcCC--------------------------CcccccccCCCCCC
Q 023644 72 SHRVTVLNISSLNLTGPIP-AQLGNLSSLQSLNLSCNRLS--------------------------GSIPSAIFTIYTLK 124 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~n~l~--------------------------~~~p~~l~~l~~L~ 124 (279)
..+++.|++++|.+.+.+| ..+.++++|++|++++|.+. +..|..+..+++|+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 3456677777777665444 44555555555555555433 34567777888888
Q ss_pred EEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCCh--------hhhhcCCcCceeeccCccCCCCCcccccCCCCc
Q 023644 125 NVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIP--------STLSNCTYLRILSLPYNNFLGAIPKEIGNLTKL 196 (279)
Q Consensus 125 ~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p--------~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 196 (279)
+|++++|.++ .+|+..|..+++|++|++++|.+++..+ ..+..+++|++|++++|.++...+..|..+++|
T Consensus 484 ~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L 562 (680)
T 1ziw_A 484 ILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562 (680)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred EEECCCCCCC-cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc
Confidence 8888888888 6666666888888888888888874311 236778889999999998884444568889999
Q ss_pred ceeecccccccccccccccCCCCCCEEeccCCcccccchhhhh-CCCCCCEEEcccCccceeec
Q 023644 197 KLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFLQ-FDSSLCLLLYSFVCSLIVFL 259 (279)
Q Consensus 197 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~ 259 (279)
++|++++|.+++..+..+.++++|+.|++++|.+++..+..+. .+++|+++++++| ++.+.+
T Consensus 563 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N-~~~c~c 625 (680)
T 1ziw_A 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN-PFDCTC 625 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTC-CCCBCC
T ss_pred ceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCC-CcccCC
Confidence 9999999999966666778899999999999999988888777 7889999999987 343443
No 69
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=4.5e-21 Score=178.40 Aligned_cols=171 Identities=26% Similarity=0.304 Sum_probs=148.0
Q ss_pred EEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeeccc
Q 023644 78 LNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNM 157 (279)
Q Consensus 78 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~ 157 (279)
.+-++.+++ .+|+.+. +++++|++++|.+++..+..|.++++|++|++++|.++ .+|+..|..+++|++|++++|+
T Consensus 36 ~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 36 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCC
T ss_pred EECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCc
Confidence 455566676 5676553 57999999999999777788999999999999999998 7888777999999999999999
Q ss_pred CCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccc-cccccccCCCCCCEEeccCCcccccchh
Q 023644 158 LHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQG-EIPREFGNLAELERMSLATNKLQGMIIN 236 (279)
Q Consensus 158 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~ 236 (279)
+++..+..|.++++|++|++++|.+++..+..|+++++|++|++++|.+++ .+|..+.++++|++|++++|.+++..+.
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 997666789999999999999999997777789999999999999999976 4678899999999999999999999888
Q ss_pred hhhCCCCCC----EEEcccC
Q 023644 237 FLQFDSSLC----LLLYSFV 252 (279)
Q Consensus 237 ~l~~l~~L~----~L~l~~n 252 (279)
.+..+++++ .++++.|
T Consensus 192 ~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 192 DLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp GGHHHHTCTTCCCEEECTTC
T ss_pred cccchhhhhhhhhhhhcccC
Confidence 887655544 5777776
No 70
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=6.2e-22 Score=169.38 Aligned_cols=174 Identities=18% Similarity=0.158 Sum_probs=134.2
Q ss_pred cEEEEEeCCCCCCccCCccC--CCCCCCCEEECCCCcCCCccc----ccccCCCCCCEEEccCCcCcccCchHHhhCCCC
Q 023644 74 RVTVLNISSLNLTGPIPAQL--GNLSSLQSLNLSCNRLSGSIP----SAIFTIYTLKNVSLHKNQLSGQIPANICSYLPF 147 (279)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~p----~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~ 147 (279)
+++.|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.++ .++...+..+++
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~ 170 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP-AFSCEQVRAFPA 170 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC-CCCTTSCCCCTT
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc-hhhHHHhccCCC
Confidence 48899999999998888887 889999999999999886544 34456889999999999997 555444488899
Q ss_pred CcEEEeecccCCCC--Chh--hhhcCCcCceeeccCccCCCCCcc----cccCCCCcceeecccccccccccccccCC--
Q 023644 148 LEVLSLSQNMLHGG--IPS--TLSNCTYLRILSLPYNNFLGAIPK----EIGNLTKLKLLYIGVNRLQGEIPREFGNL-- 217 (279)
Q Consensus 148 L~~L~l~~n~l~~~--~p~--~~~~l~~L~~L~l~~n~l~~~~p~----~l~~l~~L~~L~l~~n~l~~~~p~~l~~l-- 217 (279)
|++|++++|.+.+. ++. .+..+++|++|++++|.++ .++. .+..+++|++|++++|.+++.+|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 99999999987642 222 2357788888888888886 3333 24567888888888888887777777766
Q ss_pred -CCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 218 -AELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 218 -~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
++|++|++++|.++ .+|..+. ++|++|++++|
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N 282 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSN 282 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSC
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCC
Confidence 58888888888888 4565553 78888888887
No 71
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=3.6e-21 Score=177.49 Aligned_cols=155 Identities=23% Similarity=0.274 Sum_probs=133.9
Q ss_pred CCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCch--HHhhCCCCCcEEEeecccCCCCChhh-hhcCC
Q 023644 94 GNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPA--NICSYLPFLEVLSLSQNMLHGGIPST-LSNCT 170 (279)
Q Consensus 94 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~--~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~ 170 (279)
..+++|++|++++|.+++..|..+..+++|++|++++|.++ .++. ..+..+++|++|++++|.+++.+|.. +..++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC-BTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC-CcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 67889999999999999888999999999999999999998 4543 33488999999999999998756654 77889
Q ss_pred cCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcc
Q 023644 171 YLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYS 250 (279)
Q Consensus 171 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 250 (279)
+|++|++++|.+++.+|..+. ++|++|++++|+++ .+|..+.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECC
T ss_pred cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEec
Confidence 999999999999887776654 68999999999998 788888899999999999999996444448899999999999
Q ss_pred cC
Q 023644 251 FV 252 (279)
Q Consensus 251 ~n 252 (279)
+|
T Consensus 506 ~N 507 (562)
T 3a79_B 506 DN 507 (562)
T ss_dssp SC
T ss_pred CC
Confidence 98
No 72
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=1.1e-21 Score=167.96 Aligned_cols=176 Identities=14% Similarity=0.113 Sum_probs=148.5
Q ss_pred CCcEEEEEeCCCCCCccCC----ccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCccc--Cch-HHhhC
Q 023644 72 SHRVTVLNISSLNLTGPIP----AQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQ--IPA-NICSY 144 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~--lp~-~~~~~ 144 (279)
..+++.|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+. ++. ..+..
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 195 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK 195 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS
T ss_pred CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc
Confidence 4578999999999997655 3456799999999999999988888999999999999999998643 322 22367
Q ss_pred CCCCcEEEeecccCCCCChh----hhhcCCcCceeeccCccCCCCCcccccCC---CCcceeecccccccccccccccCC
Q 023644 145 LPFLEVLSLSQNMLHGGIPS----TLSNCTYLRILSLPYNNFLGAIPKEIGNL---TKLKLLYIGVNRLQGEIPREFGNL 217 (279)
Q Consensus 145 l~~L~~L~l~~n~l~~~~p~----~~~~l~~L~~L~l~~n~l~~~~p~~l~~l---~~L~~L~l~~n~l~~~~p~~l~~l 217 (279)
+++|++|++++|.++ .++. .+..+++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+.
T Consensus 196 l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-- 271 (310)
T 4glp_A 196 FPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP-- 271 (310)
T ss_dssp SCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--
T ss_pred CCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--
Confidence 899999999999997 4443 25788999999999999998888887776 69999999999999 7787775
Q ss_pred CCCCEEeccCCcccccchhhhhCCCCCCEEEcccCc
Q 023644 218 AELERMSLATNKLQGMIINFLQFDSSLCLLLYSFVC 253 (279)
Q Consensus 218 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 253 (279)
++|++|++++|.+++. |. +..+++|+.|++++|.
T Consensus 272 ~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 272 AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTT
T ss_pred CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCC
Confidence 8999999999999975 32 5788999999999984
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=1.1e-21 Score=168.52 Aligned_cols=167 Identities=19% Similarity=0.135 Sum_probs=74.2
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
..+++.|++++|.+.+..+ +..+++|++|++++|.+++. + ..++|++|++++|.++ .++. ..+++|++|
T Consensus 57 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-~----~~~~L~~L~l~~n~l~-~~~~---~~~~~L~~L 125 (317)
T 3o53_A 57 FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHAANNNIS-RVSC---SRGQGKKNI 125 (317)
T ss_dssp CTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-E----ECTTCCEEECCSSCCS-EEEE---CCCSSCEEE
T ss_pred CCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-c----CCCCcCEEECCCCccC-CcCc---cccCCCCEE
Confidence 3456666666666654332 55666666666666655421 1 1123333333333333 1111 123444555
Q ss_pred EeecccCCCCChhhhhcCCcCceeeccCccCCCCCccccc-CCCCcceeecccccccccccccccCCCCCCEEeccCCcc
Q 023644 152 SLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIG-NLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKL 230 (279)
Q Consensus 152 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l 230 (279)
++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++. + ....+++|++|++++|.+
T Consensus 126 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l 203 (317)
T 3o53_A 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKL 203 (317)
T ss_dssp ECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCC
T ss_pred ECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcC
Confidence 5555555443343444445555555555554443333332 344444444444444422 1 112244444444444444
Q ss_pred cccchhhhhCCCCCCEEEcccC
Q 023644 231 QGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 231 ~~~~~~~l~~l~~L~~L~l~~n 252 (279)
++..+. +..+++|++|++++|
T Consensus 204 ~~l~~~-~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 204 AFMGPE-FQSAAGVTWISLRNN 224 (317)
T ss_dssp CEECGG-GGGGTTCSEEECTTS
T ss_pred Ccchhh-hcccCcccEEECcCC
Confidence 433222 444444444444444
No 74
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=182.26 Aligned_cols=96 Identities=20% Similarity=0.174 Sum_probs=68.7
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCccccc--ccCCCCCCEEEccCCcCcccCchHHhhCCCCCc
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSA--IFTIYTLKNVSLHKNQLSGQIPANICSYLPFLE 149 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~--l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~ 149 (279)
..+++.|++++|.+.+..|..|+++++|++|++++|.+++..|.. +..+++|++|++++|.+++..+...|+.+++|+
T Consensus 72 L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 72 LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151 (844)
T ss_dssp CTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC
T ss_pred CCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC
Confidence 456778888888877777777888888888888888777655554 777788888888888877444434447778888
Q ss_pred EEEeecccCCCCChhhhh
Q 023644 150 VLSLSQNMLHGGIPSTLS 167 (279)
Q Consensus 150 ~L~l~~n~l~~~~p~~~~ 167 (279)
+|++++|.+++..+..+.
T Consensus 152 ~L~Ls~N~i~~~~~~~l~ 169 (844)
T 3j0a_A 152 SIDFSSNQIFLVCEHELE 169 (844)
T ss_dssp EEEEESSCCCCCCSGGGH
T ss_pred EEECCCCcCCeeCHHHcc
Confidence 888888777655554443
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=3e-21 Score=159.01 Aligned_cols=175 Identities=17% Similarity=0.145 Sum_probs=150.2
Q ss_pred CCcEEEEEeCCCC-CCccCCccCCCCCCCCEEECCC-CcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCc
Q 023644 72 SHRVTVLNISSLN-LTGPIPAQLGNLSSLQSLNLSC-NRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLE 149 (279)
Q Consensus 72 ~~~l~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~ 149 (279)
.++++.|++++|. +....+..+.++++|++|++++ |.+++..+..|..+++|++|++++|.++ .+|. +..+++|+
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~--~~~l~~L~ 130 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD--LTKVYSTD 130 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC-SCCC--CTTCCBCC
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc-cccc--cccccccc
Confidence 5679999999997 8866666899999999999998 9999766778999999999999999998 5887 47888888
Q ss_pred ---EEEeecc-cCCCCChhhhhcCCcCc-eeeccCccCCCCCcccccCCCCcceeeccccc-ccccccccccCC-CCCCE
Q 023644 150 ---VLSLSQN-MLHGGIPSTLSNCTYLR-ILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNR-LQGEIPREFGNL-AELER 222 (279)
Q Consensus 150 ---~L~l~~n-~l~~~~p~~~~~l~~L~-~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~~~p~~l~~l-~~L~~ 222 (279)
+|++++| .+++..+..+..+++|+ +|++++|.++ .+|......++|++|++++|+ +++..+..+.++ ++|+.
T Consensus 131 ~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~ 209 (239)
T 2xwt_C 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209 (239)
T ss_dssp SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSE
T ss_pred cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcE
Confidence 9999999 99866666799999999 9999999998 565554444899999999995 986667789999 99999
Q ss_pred EeccCCcccccchhhhhCCCCCCEEEcccCc
Q 023644 223 MSLATNKLQGMIINFLQFDSSLCLLLYSFVC 253 (279)
Q Consensus 223 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 253 (279)
|++++|.+++..+. .+++|+.|+++++.
T Consensus 210 L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 210 LDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp EECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred EECCCCccccCChh---HhccCceeeccCcc
Confidence 99999999865443 68899999998763
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=3.7e-20 Score=158.26 Aligned_cols=167 Identities=21% Similarity=0.292 Sum_probs=145.1
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
..+++.|+++++.+.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.++ .++ .+ ..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~-~~~-~~-~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLK-NVS-AI-AGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCS-CCG-GG-TTCTTCCEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCC-Cch-hh-cCCCCCCEE
Confidence 3469999999999984 45 588899999999999999854 44 899999999999999998 565 34 889999999
Q ss_pred EeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCccc
Q 023644 152 SLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQ 231 (279)
Q Consensus 152 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 231 (279)
++++|.+++ ++. +..+++|++|++++|.+++..+ +..+++|++|++++|.+++. +. +.++++|+.|++++|.++
T Consensus 113 ~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccC
Confidence 999999985 443 8999999999999999986543 88899999999999999854 43 899999999999999998
Q ss_pred ccchhhhhCCCCCCEEEcccCc
Q 023644 232 GMIINFLQFDSSLCLLLYSFVC 253 (279)
Q Consensus 232 ~~~~~~l~~l~~L~~L~l~~n~ 253 (279)
+..+ +..+++|++|++++|.
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNNQ 206 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTSC
T ss_pred cChh--hcCCCCCCEEEccCCc
Confidence 7654 8899999999999983
No 77
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.85 E-value=3.4e-20 Score=157.30 Aligned_cols=165 Identities=21% Similarity=0.272 Sum_probs=141.4
Q ss_pred CcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEE
Q 023644 73 HRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLS 152 (279)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~ 152 (279)
.+++.|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.++ .++. + ..+++|++|+
T Consensus 46 ~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~-l-~~l~~L~~L~ 118 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS-L-KDLKKLKSLS 118 (291)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG-G-TTCTTCCEEE
T ss_pred CcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh-h-ccCCCCCEEE
Confidence 4688999999998854 4 48889999999999999986443 889999999999999998 5654 4 8899999999
Q ss_pred eecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcccc
Q 023644 153 LSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQG 232 (279)
Q Consensus 153 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 232 (279)
+++|.+++ + +.+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..| +..+++|++|++++|.+++
T Consensus 119 L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 119 LEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp CTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 99999985 3 4688999999999999998864 568889999999999999986554 8899999999999999987
Q ss_pred cchhhhhCCCCCCEEEcccC
Q 023644 233 MIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 233 ~~~~~l~~l~~L~~L~l~~n 252 (279)
. + .+..+++|+.|++++|
T Consensus 193 l-~-~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 193 L-R-ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp C-G-GGTTCTTCSEEEEEEE
T ss_pred C-h-hhccCCCCCEEECcCC
Confidence 4 4 3888999999999987
No 78
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=9.7e-21 Score=173.86 Aligned_cols=172 Identities=24% Similarity=0.247 Sum_probs=153.5
Q ss_pred EEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeeccc
Q 023644 78 LNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNM 157 (279)
Q Consensus 78 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~ 157 (279)
.|.++++++ .+|+.+. ++|++|++++|.+++..|..+..+++|++|++++|.++ .+++..|..+++|++|++++|.
T Consensus 10 c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~ 85 (549)
T 2z81_A 10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNH 85 (549)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCc
Confidence 788999988 5676554 79999999999999888889999999999999999999 4554445899999999999999
Q ss_pred CCCCChhhhhcCCcCceeeccCccCCC-CCcccccCCCCcceeeccccccccccc-ccccCCCCCCEEeccCCcccccch
Q 023644 158 LHGGIPSTLSNCTYLRILSLPYNNFLG-AIPKEIGNLTKLKLLYIGVNRLQGEIP-REFGNLAELERMSLATNKLQGMII 235 (279)
Q Consensus 158 l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~ 235 (279)
+++..|..++.+++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+| ..+.++++|++|++++|.+++.+|
T Consensus 86 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence 998888889999999999999999986 457789999999999999999555665 679999999999999999999999
Q ss_pred hhhhCCCCCCEEEcccCc
Q 023644 236 NFLQFDSSLCLLLYSFVC 253 (279)
Q Consensus 236 ~~l~~l~~L~~L~l~~n~ 253 (279)
..++.+++|++|+++.|.
T Consensus 166 ~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 166 QSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp TTTTTCSEEEEEEEECSB
T ss_pred hhhhccccCceEecccCc
Confidence 999999999999998873
No 79
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=5.2e-20 Score=148.35 Aligned_cols=166 Identities=23% Similarity=0.216 Sum_probs=142.6
Q ss_pred EEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeec
Q 023644 76 TVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQ 155 (279)
Q Consensus 76 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~ 155 (279)
+.++.+++++. .+|..+ .+++++|++++|.+++..+..+..+++|++|++++|.++ .+|...|..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCC
Confidence 46788888887 445444 468999999999999766677889999999999999998 78877778999999999999
Q ss_pred ccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcccccch
Q 023644 156 NMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMII 235 (279)
Q Consensus 156 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~ 235 (279)
|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+.+.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-- 163 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-- 163 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC--
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC--
Confidence 999966666688999999999999999977777788999999999999999977777789999999999999988754
Q ss_pred hhhhCCCCCCEEEcccC
Q 023644 236 NFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 236 ~~l~~l~~L~~L~l~~n 252 (279)
+++|++|+++.|
T Consensus 164 -----~~~l~~L~~~~n 175 (208)
T 2o6s_A 164 -----CPGIRYLSEWIN 175 (208)
T ss_dssp -----TTTTHHHHHHHH
T ss_pred -----CCCHHHHHHHHH
Confidence 457778887765
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=2e-21 Score=167.70 Aligned_cols=178 Identities=19% Similarity=0.184 Sum_probs=116.0
Q ss_pred CcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCc-ccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 73 HRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGS-IPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
.+++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+ ..+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH-TTCTTCSEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHH-hcCCCCCEE
Confidence 4566777777776655443 45567777777777776644 56666677777777777777665555555 567777777
Q ss_pred Eeecc-cCCCC-ChhhhhcCCcCceeeccCc-cCCCC-CcccccCCC-Ccceeecccc--ccc-ccccccccCCCCCCEE
Q 023644 152 SLSQN-MLHGG-IPSTLSNCTYLRILSLPYN-NFLGA-IPKEIGNLT-KLKLLYIGVN--RLQ-GEIPREFGNLAELERM 223 (279)
Q Consensus 152 ~l~~n-~l~~~-~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~l~~l~-~L~~L~l~~n--~l~-~~~p~~l~~l~~L~~L 223 (279)
++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.+|..+.++++|++|
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 77777 45542 5555666777777777777 66543 455566666 7777777776 344 3455556667777777
Q ss_pred eccCCc-ccccchhhhhCCCCCCEEEcccC
Q 023644 224 SLATNK-LQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 224 ~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
++++|. +++..+..+..+++|++|++++|
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 777776 56566666666777777777665
No 81
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=6.3e-20 Score=150.25 Aligned_cols=151 Identities=25% Similarity=0.262 Sum_probs=133.3
Q ss_pred CCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeec
Q 023644 98 SLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSL 177 (279)
Q Consensus 98 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 177 (279)
.-+.++.+++.++ .+|..+. ++|++|++++|.+++ ++...|..+++|++|++++|.++...+..+..+++|++|++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCc-cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 3567899999887 6777654 899999999999994 54444589999999999999998665566889999999999
Q ss_pred cCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccCc
Q 023644 178 PYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFVC 253 (279)
Q Consensus 178 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 253 (279)
++|.+++..+..+..+++|++|++++|.++ .+|..+.++++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 999999777777889999999999999999 889999999999999999999998888889999999999999983
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=9.5e-21 Score=171.78 Aligned_cols=175 Identities=25% Similarity=0.199 Sum_probs=137.0
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccc----------------cccCCCCCCEEEccCCcCcc
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPS----------------AIFTIYTLKNVSLHKNQLSG 135 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~----------------~l~~l~~L~~L~l~~n~l~~ 135 (279)
..+++.|++++|.+.+..| +..+++|++|++++|.+++..+. ....+++|++|++++|.+++
T Consensus 57 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~ 134 (487)
T 3oja_A 57 FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITM 134 (487)
T ss_dssp CTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCS
T ss_pred CCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCC
Confidence 4567777777777775443 66677777776666665432110 01235788999999999985
Q ss_pred cCchHHhhCCCCCcEEEeecccCCCCChhhhh-cCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccc
Q 023644 136 QIPANICSYLPFLEVLSLSQNMLHGGIPSTLS-NCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREF 214 (279)
Q Consensus 136 ~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l 214 (279)
..|..+ ..+++|++|++++|.+++..|..+. .+++|++|++++|.+++. |. ...+++|++|++++|.+++. |..+
T Consensus 135 ~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~-~~~~ 210 (487)
T 3oja_A 135 LRDLDE-GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEF 210 (487)
T ss_dssp GGGBCG-GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGG
T ss_pred CCchhh-cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCC-CHhH
Confidence 545444 8899999999999999988888876 799999999999999865 33 34689999999999999964 4558
Q ss_pred cCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccCc
Q 023644 215 GNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFVC 253 (279)
Q Consensus 215 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 253 (279)
..+++|+.|++++|.+++ +|..++.+++|+.|++++|.
T Consensus 211 ~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 211 QSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp GGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCC
T ss_pred cCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCC
Confidence 899999999999999996 67778899999999999983
No 83
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=7.8e-20 Score=158.46 Aligned_cols=169 Identities=22% Similarity=0.324 Sum_probs=140.8
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
..+++.|++++|.+.+..+ +..+++|++|++++|.+++. +. +..+++|+++++++|.++ .++. +..+++|++|
T Consensus 154 l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~-~~~~--~~~~~~L~~L 226 (347)
T 4fmz_A 154 MTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQIT-DITP--VANMTRLNSL 226 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCC-CCGG--GGGCTTCCEE
T ss_pred CCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCC-CCch--hhcCCcCCEE
Confidence 4678999999999885433 78899999999999998853 33 788899999999999998 4444 4788999999
Q ss_pred EeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCccc
Q 023644 152 SLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQ 231 (279)
Q Consensus 152 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 231 (279)
++++|.+++. +. +..+++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.++
T Consensus 227 ~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~ 300 (347)
T 4fmz_A 227 KIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLG 300 (347)
T ss_dssp ECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred EccCCccCCC-cc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCC
Confidence 9999998844 43 88889999999999988853 4578889999999999998854 45888899999999999999
Q ss_pred ccchhhhhCCCCCCEEEcccCc
Q 023644 232 GMIINFLQFDSSLCLLLYSFVC 253 (279)
Q Consensus 232 ~~~~~~l~~l~~L~~L~l~~n~ 253 (279)
+..+..++.+++|++|++++|.
T Consensus 301 ~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 301 NEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp GGGHHHHHTCTTCSEEECCSSS
T ss_pred CcChhHhhccccCCEEEccCCc
Confidence 8888889999999999999873
No 84
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.82 E-value=4.5e-20 Score=147.55 Aligned_cols=149 Identities=18% Similarity=0.196 Sum_probs=83.8
Q ss_pred CCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCce
Q 023644 95 NLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRI 174 (279)
Q Consensus 95 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 174 (279)
.+++|++|++++|.++ .+| .+..+++|++|++++|.++ .++ .+ ..+++|++|++++|.+++..|..+..+++|++
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~l-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-PI-SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-GG-TTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-hh-hcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 3445555555555554 333 3555555556666555443 222 22 45566666666666655445555556666666
Q ss_pred eeccCccCCCCCcccccCCCCcceeeccccc-ccccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 175 LSLPYNNFLGAIPKEIGNLTKLKLLYIGVNR-LQGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 175 L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
|++++|.+++..|..++.+++|++|++++|. ++ .+| .+.++++|++|++++|.+++.. .+..+++|++|++++|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCc
Confidence 6666666665555556666666666666665 33 344 4556666666666666665422 4555666666666665
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=5.9e-21 Score=164.74 Aligned_cols=180 Identities=20% Similarity=0.158 Sum_probs=154.2
Q ss_pred CCcEEEEEeCCCCCCcc-CCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCC-cCccc-CchHHhhCCCCC
Q 023644 72 SHRVTVLNISSLNLTGP-IPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKN-QLSGQ-IPANICSYLPFL 148 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n-~l~~~-lp~~~~~~l~~L 148 (279)
..+++.|++++|.+.+. ++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+ ..+++|
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~-~~~~~L 170 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL-SSCSRL 170 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH-HHCTTC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH-hcCCCC
Confidence 46799999999998865 7778899999999999999999888889999999999999999 67753 55444 789999
Q ss_pred cEEEeecc-cCCCC-ChhhhhcCC-cCceeeccCc--cCC-CCCcccccCCCCcceeeccccc-ccccccccccCCCCCC
Q 023644 149 EVLSLSQN-MLHGG-IPSTLSNCT-YLRILSLPYN--NFL-GAIPKEIGNLTKLKLLYIGVNR-LQGEIPREFGNLAELE 221 (279)
Q Consensus 149 ~~L~l~~n-~l~~~-~p~~~~~l~-~L~~L~l~~n--~l~-~~~p~~l~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~ 221 (279)
++|++++| .+++. ++..+..++ +|++|++++| .++ +.+|..+..+++|++|++++|. +++..+..+.++++|+
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 250 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 250 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCC
Confidence 99999999 88854 677788999 9999999999 455 4567777889999999999999 7878888999999999
Q ss_pred EEeccCCc-ccccchhhhhCCCCCCEEEcccC
Q 023644 222 RMSLATNK-LQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 222 ~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
+|++++|. +.......++.+++|+.|++++|
T Consensus 251 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 251 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred EeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 99999995 44333346888999999999986
No 86
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.82 E-value=5.9e-19 Score=152.91 Aligned_cols=167 Identities=23% Similarity=0.333 Sum_probs=110.3
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
..+++.|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+. .++. +..+++|+++
T Consensus 131 l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L 204 (347)
T 4fmz_A 131 LTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-DISP--LASLTSLHYF 204 (347)
T ss_dssp CTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-CCGG--GGGCTTCCEE
T ss_pred CCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-cccc--ccCCCcccee
Confidence 4557777777775554433 36677777777777777664322 666777777777777776 4544 3667777777
Q ss_pred EeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCccc
Q 023644 152 SLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQ 231 (279)
Q Consensus 152 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 231 (279)
++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.++
T Consensus 205 ~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~ 278 (347)
T 4fmz_A 205 TAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQIS 278 (347)
T ss_dssp ECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred ecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccC
Confidence 777777764333 6667777777777777764333 66677777777777777642 35667777777777777776
Q ss_pred ccchhhhhCCCCCCEEEcccC
Q 023644 232 GMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 232 ~~~~~~l~~l~~L~~L~l~~n 252 (279)
+. ..+..+++|++|++++|
T Consensus 279 ~~--~~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 279 DI--SVLNNLSQLNSLFLNNN 297 (347)
T ss_dssp CC--GGGGGCTTCSEEECCSS
T ss_pred CC--hhhcCCCCCCEEECcCC
Confidence 54 34666777777777765
No 87
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=3.6e-20 Score=161.78 Aligned_cols=176 Identities=25% Similarity=0.265 Sum_probs=150.9
Q ss_pred CCCCCCCccceEec---------CCCCcEEEEEeCCCCCCccCCccCC-CCCCCCEEECCCCcCCCcccccccCCCCCCE
Q 023644 56 TSICFCNWTGVTCD---------LHSHRVTVLNISSLNLTGPIPAQLG-NLSSLQSLNLSCNRLSGSIPSAIFTIYTLKN 125 (279)
Q Consensus 56 ~~~~~c~w~gv~c~---------~~~~~l~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 125 (279)
+..|.|.+..+.|. .....++.|+|++|.+.+..+..+. .+++|++|++++|.+++..+..|..+++|++
T Consensus 13 p~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 92 (361)
T 2xot_A 13 PANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRY 92 (361)
T ss_dssp CTTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCE
Confidence 44577888888886 1245688999999999987777787 9999999999999999777788999999999
Q ss_pred EEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccc---cCCCCcceeecc
Q 023644 126 VSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEI---GNLTKLKLLYIG 202 (279)
Q Consensus 126 L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l---~~l~~L~~L~l~ 202 (279)
|++++|.++ .++...|..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+ ..+++|+.|+++
T Consensus 93 L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 93 LDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp EECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred EECCCCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence 999999998 7777777999999999999999998888899999999999999999996444444 568999999999
Q ss_pred cccccccccccccCCCC--CCEEeccCCcccc
Q 023644 203 VNRLQGEIPREFGNLAE--LERMSLATNKLQG 232 (279)
Q Consensus 203 ~n~l~~~~p~~l~~l~~--L~~L~l~~n~l~~ 232 (279)
+|.+++..+..+..++. ++.|++++|.+..
T Consensus 172 ~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp SSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 99999666667888877 4889999999874
No 88
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=7.4e-20 Score=168.16 Aligned_cols=173 Identities=20% Similarity=0.286 Sum_probs=92.2
Q ss_pred CCCCCCCC-----Cccce-EecCCCCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEE
Q 023644 54 WNTSICFC-----NWTGV-TCDLHSHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVS 127 (279)
Q Consensus 54 w~~~~~~c-----~w~gv-~c~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 127 (279)
|.....+| .|.++ .|. ..+++.|++++|++.+ +|..+. ++|++|++++|.++ .+| ..+++|++|+
T Consensus 36 W~~~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~ 106 (571)
T 3cvr_A 36 WEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLD 106 (571)
T ss_dssp HHTTCCTTCCHHHHHHHHHHHH--HTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEE
T ss_pred HhccCCccccccchhhhccccc--cCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEE
Confidence 55544556 57777 565 2357777777777765 555442 56666666666666 445 2345666666
Q ss_pred ccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCC-------------------CCcc
Q 023644 128 LHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLG-------------------AIPK 188 (279)
Q Consensus 128 l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-------------------~~p~ 188 (279)
+++|.++ .+|. + .. +|++|++++|.+++ +|. .+++|++|++++|.+++ .+|.
T Consensus 107 Ls~N~l~-~ip~-l-~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~lp~ 177 (571)
T 3cvr_A 107 ACDNRLS-TLPE-L-PA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPE 177 (571)
T ss_dssp CCSSCCS-CCCC-C-CT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC
T ss_pred ccCCCCC-Ccch-h-hc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCCcch
Confidence 6666665 3555 3 22 55555555555553 343 34445555555554443 1333
Q ss_pred cccCCCCcceeecccccccccccccccCCCCC-------CEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 189 EIGNLTKLKLLYIGVNRLQGEIPREFGNLAEL-------ERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 189 ~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L-------~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
+. ++|+.|++++|.++ .+|. +.+ +| +.|++++|.++. +|..+..+++|+.|++++|
T Consensus 178 -l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 178 -LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDN 240 (571)
T ss_dssp -CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSS
T ss_pred -hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCC
Confidence 32 44555555555554 3443 332 44 555555555553 4444555666666666655
No 89
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=1e-19 Score=145.49 Aligned_cols=152 Identities=16% Similarity=0.279 Sum_probs=130.4
Q ss_pred CcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEE
Q 023644 73 HRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLS 152 (279)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~ 152 (279)
.+++.|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+ ..+++|++|+
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~ 118 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNL-SGLTSLTLLD 118 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCC-TTCTTCCEEE
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhh-cCCCCCCEEE
Confidence 46899999999998 556 6889999999999999776 34578899999999999999986667666 8899999999
Q ss_pred eecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcccc
Q 023644 153 LSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQG 232 (279)
Q Consensus 153 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 232 (279)
+++|.+++..|..+..+++|++|++++|.+.+.+| .+..+++|++|++++|.+++ ++ .+.++++|++|++++|++.+
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 99999998889999999999999999998333566 68899999999999999985 44 78899999999999999864
No 90
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=6.6e-21 Score=163.53 Aligned_cols=169 Identities=22% Similarity=0.165 Sum_probs=110.9
Q ss_pred CCCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcE
Q 023644 71 HSHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEV 150 (279)
Q Consensus 71 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~ 150 (279)
...+++.|++++|.+.+.. ..++|++|++++|.+++..+. .+++|++|++++|.++ .+++..+..+++|++
T Consensus 78 ~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~ 148 (317)
T 3o53_A 78 SLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQY 148 (317)
T ss_dssp TCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCC-SGGGBCTGGGSSEEE
T ss_pred hcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCC-CccchhhhccCCCCE
Confidence 3567888888888777432 236777777777777644333 2466777777777776 444433366777777
Q ss_pred EEeecccCCCCChhhhh-cCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCc
Q 023644 151 LSLSQNMLHGGIPSTLS-NCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNK 229 (279)
Q Consensus 151 L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 229 (279)
|++++|.+++..+..+. .+++|++|++++|.+++. |. ...+++|++|++++|.+++ +|..+..+++|++|++++|.
T Consensus 149 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSC
T ss_pred EECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCc
Confidence 77777777755555553 567777777777776643 22 2246677777777777773 44446677777777777777
Q ss_pred ccccchhhhhCCCCCCEEEcccC
Q 023644 230 LQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 230 l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
+++ +|..+..+++|+.|++++|
T Consensus 226 l~~-l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 226 LVL-IEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp CCE-ECTTCCCCTTCCEEECTTC
T ss_pred ccc-hhhHhhcCCCCCEEEccCC
Confidence 764 4556667777777777776
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=5.7e-20 Score=159.85 Aligned_cols=193 Identities=18% Similarity=0.177 Sum_probs=129.6
Q ss_pred CCCCCccceEecC---------CCCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCccc-ccccCCCCCCE-E
Q 023644 58 ICFCNWTGVTCDL---------HSHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIP-SAIFTIYTLKN-V 126 (279)
Q Consensus 58 ~~~c~w~gv~c~~---------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~-L 126 (279)
.|.|.+..|.|.. ...+++.|+|++|.+....+..|.++++|++|++++|.+.+.+| ..|.+++++++ +
T Consensus 6 ~C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 6 ICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp SSEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred ccEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 3778999999961 24578999999999996655679999999999999999876665 46788888775 6
Q ss_pred EccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccC-ccCCCCCcccccCCC-Ccceeecccc
Q 023644 127 SLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPY-NNFLGAIPKEIGNLT-KLKLLYIGVN 204 (279)
Q Consensus 127 ~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~l~~l~-~L~~L~l~~n 204 (279)
.+..|+++ .+++..|..+++|++|++++|.++...+..+....++..+++.+ +.+....+..+..+. .++.|++++|
T Consensus 86 ~~~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 86 IEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164 (350)
T ss_dssp EEEETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred cccCCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence 66779998 78777779999999999999999855444444445555566544 333322233344432 4555666666
Q ss_pred cccccccccccCCCCCCEEeccC-CcccccchhhhhCCCCCCEEEcccC
Q 023644 205 RLQGEIPREFGNLAELERMSLAT-NKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 205 ~l~~~~p~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
+++ .+|.......+|+.+++++ |.++...+..|..+++|++|++++|
T Consensus 165 ~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 165 GIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 212 (350)
T ss_dssp CCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS
T ss_pred ccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC
Confidence 665 3444433445555555553 3344333344555566666666555
No 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=3e-19 Score=165.51 Aligned_cols=166 Identities=21% Similarity=0.283 Sum_probs=129.6
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
..+++.|+++++.+.. ++ .+..+++|+.|++++|.+++..| +..+++|+.|++++|.++ .+| .+ ..+++|++|
T Consensus 42 L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l-~~l~~L~~L 114 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SL-KDLKKLKSL 114 (605)
T ss_dssp HTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TS-TTCTTCCEE
T ss_pred CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hh-ccCCCCCEE
Confidence 3457788888888774 33 47788888888888888885443 778888888888888887 455 33 778888888
Q ss_pred EeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCccc
Q 023644 152 SLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQ 231 (279)
Q Consensus 152 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 231 (279)
++++|.+++ + +.+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.++
T Consensus 115 ~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 115 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp ECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 888888874 3 3577888888888888888754 567788888888888888886655 788888888888888887
Q ss_pred ccchhhhhCCCCCCEEEcccC
Q 023644 232 GMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 232 ~~~~~~l~~l~~L~~L~l~~n 252 (279)
+. ..+..+++|+.|++++|
T Consensus 189 ~l--~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 189 DL--RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp BC--GGGTTCTTCSEEECCSE
T ss_pred CC--hHHccCCCCCEEEccCC
Confidence 64 35778888888888876
No 93
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.81 E-value=6.8e-19 Score=158.73 Aligned_cols=165 Identities=26% Similarity=0.352 Sum_probs=109.8
Q ss_pred CcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEE
Q 023644 73 HRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLS 152 (279)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~ 152 (279)
.+++.|++++|.+.+. +.+..+++|++|++++|.+++..+ +..+++|++|++++|.++ .++. +..+++|++|+
T Consensus 221 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~ 293 (466)
T 1o6v_A 221 TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP--LAGLTALTNLE 293 (466)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEE
T ss_pred CCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC-cccc--ccCCCccCeEE
Confidence 3455555555555532 235556666666666666664333 566667777777777766 3443 35667777777
Q ss_pred eecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcccc
Q 023644 153 LSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQG 232 (279)
Q Consensus 153 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 232 (279)
+++|.+++..+ +..+++|++|++++|.+++..| +..+++|++|++++|.+++. ..+.++++|+.|++++|.+++
T Consensus 294 L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred cCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence 77777764332 6677777777777777776554 56677777777777777754 357778888888888888877
Q ss_pred cchhhhhCCCCCCEEEcccC
Q 023644 233 MIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 233 ~~~~~l~~l~~L~~L~l~~n 252 (279)
..| +..+++|+.|++++|
T Consensus 368 ~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 368 LTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp CGG--GTTCTTCCEEECCCE
T ss_pred cch--hhcCCCCCEEeccCC
Confidence 766 677888888888776
No 94
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.79 E-value=5.8e-20 Score=174.02 Aligned_cols=202 Identities=23% Similarity=0.285 Sum_probs=92.7
Q ss_pred CChhHHHHHHHHHHhcCCCCCCccCCCCCC-CCCCCCccceEecCCCCcEEEEEeCCCCCCccCCccCCCCCCCCEE---
Q 023644 27 TITTDRDALLALKAHITHDPTNFFAKNWNT-SICFCNWTGVTCDLHSHRVTVLNISSLNLTGPIPAQLGNLSSLQSL--- 102 (279)
Q Consensus 27 ~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~-~~~~c~w~gv~c~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L--- 102 (279)
....++.++.++..+.....+..-.. |.. ......|.+..+. .++++.|++.++.+... +..+.....|+.+
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s--~~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~ 204 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQ-PTGDSTPSGTATNSAVS--TPLTPKIELFANGKDEA-NQALLQHKKLSQYSID 204 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCC-CcCCCCccccCCCceec--CCccceEEeeCCCCCcc-hhhHhhcCccCccccc
Confidence 34566788888887664333222222 533 3345678777765 45677777777776642 3222222222222
Q ss_pred --ECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCc
Q 023644 103 --NLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYN 180 (279)
Q Consensus 103 --~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 180 (279)
++..|.+. ..+..+..++.|+.|+|++|.+. .+|..+ ..+++|++|++++|.++ .+|..++.+++|++|+|++|
T Consensus 205 ~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~-~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 205 EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANI-FKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp ------------------CCCCCCEEECTTSCCS-CCCGGG-GGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTS
T ss_pred Ccccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhh-cCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCC
Confidence 22223333 34556666777777777777776 666666 36677777777777776 66666777777777777777
Q ss_pred cCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcccccchhhh
Q 023644 181 NFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFL 238 (279)
Q Consensus 181 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l 238 (279)
.++ .+|..++.+++|++|+|++|.++ .+|..|+++++|+.|+|++|.+++.+|..+
T Consensus 281 ~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 281 RLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred cCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 766 56666777777777777777775 666667777777777777777776666544
No 95
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.79 E-value=6e-19 Score=140.48 Aligned_cols=131 Identities=20% Similarity=0.227 Sum_probs=94.6
Q ss_pred EEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccc-cccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeec
Q 023644 77 VLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPS-AIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQ 155 (279)
Q Consensus 77 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~ 155 (279)
.++++++++. .+|..+.. ++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+ ..+++|++|++++
T Consensus 12 ~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-EGASHIQELQLGE 87 (192)
T ss_dssp EEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCS
T ss_pred EEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc-CCcccCCEEECCC
Confidence 4566677775 56665543 788888888888755543 37778888888888888874434444 7778888888888
Q ss_pred ccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeeccccccccccc
Q 023644 156 NMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIP 211 (279)
Q Consensus 156 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p 211 (279)
|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 88876666667777777777777777777777777777777777777777775543
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.79 E-value=1.1e-20 Score=166.27 Aligned_cols=181 Identities=18% Similarity=0.237 Sum_probs=117.9
Q ss_pred CCcEEEEEeCCCCCCc----cCCccCCCCCCCCEEECCCCcCCCcccccc----cCC---------CCCCEEEccCCcCc
Q 023644 72 SHRVTVLNISSLNLTG----PIPAQLGNLSSLQSLNLSCNRLSGSIPSAI----FTI---------YTLKNVSLHKNQLS 134 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l----~~l---------~~L~~L~l~~n~l~ 134 (279)
.++++.|++++|.+.+ .++..+..+++|++|++++|.+++..+..+ ..+ ++|++|++++|.++
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 3567777777777765 345556667777777777777653323222 223 67777777777775
Q ss_pred -ccCch--HHhhCCCCCcEEEeecccCCC-----CChhhhhcCCcCceeeccCccCC----CCCcccccCCCCcceeecc
Q 023644 135 -GQIPA--NICSYLPFLEVLSLSQNMLHG-----GIPSTLSNCTYLRILSLPYNNFL----GAIPKEIGNLTKLKLLYIG 202 (279)
Q Consensus 135 -~~lp~--~~~~~l~~L~~L~l~~n~l~~-----~~p~~~~~l~~L~~L~l~~n~l~----~~~p~~l~~l~~L~~L~l~ 202 (279)
+.++. ..+..+++|++|++++|.++. ..|..+..+++|++|++++|.++ +.+|..+..+++|++|+++
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~ 252 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence 33442 222566777777777777762 23335667777777777777774 4566667777777777777
Q ss_pred ccccccc----ccccc--cCCCCCCEEeccCCcccc----cchhhh-hCCCCCCEEEcccC
Q 023644 203 VNRLQGE----IPREF--GNLAELERMSLATNKLQG----MIINFL-QFDSSLCLLLYSFV 252 (279)
Q Consensus 203 ~n~l~~~----~p~~l--~~l~~L~~L~l~~n~l~~----~~~~~l-~~l~~L~~L~l~~n 252 (279)
+|.+++. ++..+ +++++|++|++++|.+++ .+|..+ .++++|++|++++|
T Consensus 253 ~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred CCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 7777754 45555 337778888888887776 366655 55777888888776
No 97
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.79 E-value=1.8e-18 Score=155.89 Aligned_cols=167 Identities=26% Similarity=0.321 Sum_probs=87.6
Q ss_pred CcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCccc--------------------ccccCCCCCCEEEccCCc
Q 023644 73 HRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIP--------------------SAIFTIYTLKNVSLHKNQ 132 (279)
Q Consensus 73 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p--------------------~~l~~l~~L~~L~l~~n~ 132 (279)
.+++.|++++|.+.+. +.+..+++|++|++++|.+++..| ..+..+++|++|++++|.
T Consensus 177 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~ 254 (466)
T 1o6v_A 177 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 254 (466)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred CCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCc
Confidence 4455555555555432 124445555555555555443322 234445555555555555
Q ss_pred CcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccc
Q 023644 133 LSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPR 212 (279)
Q Consensus 133 l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~ 212 (279)
+++ ++. +..+++|++|++++|.+++. +. +..+++|++|++++|.+++..| +..+++|++|++++|.+++..|
T Consensus 255 l~~-~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~- 326 (466)
T 1o6v_A 255 ISN-LAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP- 326 (466)
T ss_dssp CCC-CGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-
T ss_pred ccc-chh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-
Confidence 542 222 24555555555555555532 22 5555555666665555554322 4455566666666666654443
Q ss_pred cccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 213 EFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 213 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
+..+++|+.|++++|.+++. ..+..+++|++|++++|
T Consensus 327 -~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 327 -VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHN 363 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS
T ss_pred -hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCC
Confidence 45566666666666666554 34556666666666665
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=4e-19 Score=148.48 Aligned_cols=149 Identities=22% Similarity=0.276 Sum_probs=112.2
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
..+++.|++++|++.. ++ .+..+++|++|++++|.+++.. . +..+++|++|++++|.++ .+|... . ++|++|
T Consensus 40 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~-~-l~~l~~L~~L~L~~N~l~-~l~~~~--~-~~L~~L 111 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLS-P-LKDLTKLEELSVNRNRLK-NLNGIP--S-ACLSRL 111 (263)
T ss_dssp HTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCSSCCEEECCSSCCS-CCTTCC--C-SSCCEE
T ss_pred cCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCCh-h-hccCCCCCEEECCCCccC-CcCccc--c-CcccEE
Confidence 3467888888888773 44 5777888888888888887543 3 778888888888888887 566533 2 788888
Q ss_pred EeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCccc
Q 023644 152 SLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQ 231 (279)
Q Consensus 152 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 231 (279)
++++|.+++ ++ .+..+++|++|++++|.+++. + .+..+++|++|++++|.+++. ..+.++++|+.|++++|.++
T Consensus 112 ~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 112 FLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred EccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 888888874 33 577888888888888888753 3 577788888888888888755 56778888888888888877
Q ss_pred ccc
Q 023644 232 GMI 234 (279)
Q Consensus 232 ~~~ 234 (279)
+..
T Consensus 186 ~~~ 188 (263)
T 1xeu_A 186 NEP 188 (263)
T ss_dssp CCC
T ss_pred CCc
Confidence 653
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.78 E-value=7.7e-20 Score=160.95 Aligned_cols=181 Identities=19% Similarity=0.257 Sum_probs=140.0
Q ss_pred CCcEEEEEeCCCC---CCccCCccC-------CCCCCCCEEECCCCcCCC----cccccccCCCCCCEEEccCCcCcccC
Q 023644 72 SHRVTVLNISSLN---LTGPIPAQL-------GNLSSLQSLNLSCNRLSG----SIPSAIFTIYTLKNVSLHKNQLSGQI 137 (279)
Q Consensus 72 ~~~l~~L~l~~~~---l~~~~~~~~-------~~l~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~l~~n~l~~~l 137 (279)
.++++.|++++|. +.+.+|..+ ..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++..
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 138 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA 138 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH
Confidence 4578899998864 444555444 678899999999999886 46777888899999999999886332
Q ss_pred chHHh---hCC---------CCCcEEEeecccCC-CCCh---hhhhcCCcCceeeccCccCCC-----CCcccccCCCCc
Q 023644 138 PANIC---SYL---------PFLEVLSLSQNMLH-GGIP---STLSNCTYLRILSLPYNNFLG-----AIPKEIGNLTKL 196 (279)
Q Consensus 138 p~~~~---~~l---------~~L~~L~l~~n~l~-~~~p---~~~~~l~~L~~L~l~~n~l~~-----~~p~~l~~l~~L 196 (279)
+..+. ..+ ++|++|++++|.++ +.+| ..+..+++|++|++++|.++. ..|..+..+++|
T Consensus 139 ~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L 218 (386)
T 2ca6_A 139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC
T ss_pred HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc
Confidence 32221 223 89999999999987 3444 466788899999999998873 234467788899
Q ss_pred ceeeccccccc----ccccccccCCCCCCEEeccCCccccc----chhhhh--CCCCCCEEEcccC
Q 023644 197 KLLYIGVNRLQ----GEIPREFGNLAELERMSLATNKLQGM----IINFLQ--FDSSLCLLLYSFV 252 (279)
Q Consensus 197 ~~L~l~~n~l~----~~~p~~l~~l~~L~~L~l~~n~l~~~----~~~~l~--~l~~L~~L~l~~n 252 (279)
++|++++|.++ +.+|..+..+++|++|++++|.+++. ++..+. .+++|++|++++|
T Consensus 219 ~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n 284 (386)
T 2ca6_A 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 284 (386)
T ss_dssp CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred cEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC
Confidence 99999999986 56788888999999999999999876 556663 3899999999987
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=2e-18 Score=158.72 Aligned_cols=150 Identities=25% Similarity=0.343 Sum_probs=120.4
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
..+++.|++++|.+.+ +|. +.. +|++|++++|.+++ +|. .+++|++|++++|.++ .+|. .+++|++|
T Consensus 99 l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L 165 (571)
T 3cvr_A 99 PASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT-MLPE----LPTSLEVL 165 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEE
T ss_pred cCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC-cCCC----cCCCcCEE
Confidence 4567777777777775 555 554 78888888888775 555 5778888888888888 4775 46889999
Q ss_pred EeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCc-------ceeecccccccccccccccCCCCCCEEe
Q 023644 152 SLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKL-------KLLYIGVNRLQGEIPREFGNLAELERMS 224 (279)
Q Consensus 152 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L-------~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 224 (279)
++++|.+++ +|. +. ++|++|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+.++++|+.|+
T Consensus 166 ~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~ 236 (571)
T 3cvr_A 166 SVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTII 236 (571)
T ss_dssp ECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEE
T ss_pred ECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEE
Confidence 999999985 676 55 89999999999999 6777 654 67 99999999999 6888888899999999
Q ss_pred ccCCcccccchhhhhCCCC
Q 023644 225 LATNKLQGMIINFLQFDSS 243 (279)
Q Consensus 225 l~~n~l~~~~~~~l~~l~~ 243 (279)
+++|.+++.+|..+..++.
T Consensus 237 L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 237 LEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCSSSCCHHHHHHHHHHHH
T ss_pred eeCCcCCCcCHHHHHHhhc
Confidence 9999999999998876543
No 101
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.78 E-value=4.3e-18 Score=153.15 Aligned_cols=145 Identities=21% Similarity=0.214 Sum_probs=94.6
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
..+++.|++++|.+.+ ++ ++.+++|++|++++|.+++. + +..+++|++|++++|...+.++ +..+++|++|
T Consensus 105 l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L 175 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTL 175 (457)
T ss_dssp CTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEE
T ss_pred CCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccc---cccCCcCCEE
Confidence 4678889999998886 33 78888888888888888763 2 5666777777777775444552 2556667777
Q ss_pred EeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCccc
Q 023644 152 SLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQ 231 (279)
Q Consensus 152 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 231 (279)
++++|.+++ +| +..+++|+.|++++|.+++. .++.+++|++|++++|++++ +| +..+++|++|++++|.++
T Consensus 176 ~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 176 DCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp ECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred ECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence 777766664 33 55566666666666666543 25555666666666666664 34 555666666666666665
Q ss_pred ccc
Q 023644 232 GMI 234 (279)
Q Consensus 232 ~~~ 234 (279)
+..
T Consensus 247 ~~~ 249 (457)
T 3bz5_A 247 ELD 249 (457)
T ss_dssp CCC
T ss_pred CcC
Confidence 543
No 102
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.77 E-value=6.3e-18 Score=152.05 Aligned_cols=160 Identities=23% Similarity=0.255 Sum_probs=114.6
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
..+++.|++++|.+.+. | ++.+++|++|++++|.+++. + +..+++|++|++++|.++ .+| +..+++|++|
T Consensus 63 l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~-~l~---~~~l~~L~~L 132 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLT-KLD---VSQNPLLTYL 132 (457)
T ss_dssp CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCS-CCC---CTTCTTCCEE
T ss_pred cCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCC-eec---CCCCCcCCEE
Confidence 34677777777777653 3 66777777777777777653 2 666777777777777776 354 3667777777
Q ss_pred EeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCccc
Q 023644 152 SLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQ 231 (279)
Q Consensus 152 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 231 (279)
++++|.+++ ++ ++.+++|++|++++|...+.+ .+..+++|++|++++|.+++ +| +..+++|+.|++++|.++
T Consensus 133 ~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 133 NCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp ECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCS
T ss_pred ECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCC
Confidence 777777764 32 666777777777777555454 36677888888888888875 44 778888888888888888
Q ss_pred ccchhhhhCCCCCCEEEcccC
Q 023644 232 GMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 232 ~~~~~~l~~l~~L~~L~l~~n 252 (279)
+. .++.+++|++|++++|
T Consensus 205 ~~---~l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 205 KL---DLNQNIQLTFLDCSSN 222 (457)
T ss_dssp CC---CCTTCTTCSEEECCSS
T ss_pred ee---ccccCCCCCEEECcCC
Confidence 75 3778888899999887
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.77 E-value=1.1e-19 Score=158.85 Aligned_cols=179 Identities=22% Similarity=0.210 Sum_probs=81.9
Q ss_pred cEEEEEeCCCCCCccCCccCCCC-----CCCCEEECCCCcCCCcccccc----cCC-CCCCEEEccCCcCcccCchHH--
Q 023644 74 RVTVLNISSLNLTGPIPAQLGNL-----SSLQSLNLSCNRLSGSIPSAI----FTI-YTLKNVSLHKNQLSGQIPANI-- 141 (279)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~p~~l----~~l-~~L~~L~l~~n~l~~~lp~~~-- 141 (279)
+++.|++++|.+.+..+..+..+ ++|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 45555555555554433333332 555555555555544333322 222 455555555555542222221
Q ss_pred -hhC-CCCCcEEEeecccCCCCCh----hhhhcCC-cCceeeccCccCCCCCccccc----CC-CCcceeeccccccccc
Q 023644 142 -CSY-LPFLEVLSLSQNMLHGGIP----STLSNCT-YLRILSLPYNNFLGAIPKEIG----NL-TKLKLLYIGVNRLQGE 209 (279)
Q Consensus 142 -~~~-l~~L~~L~l~~n~l~~~~p----~~~~~l~-~L~~L~l~~n~l~~~~p~~l~----~l-~~L~~L~l~~n~l~~~ 209 (279)
+.. ..+|++|++++|.+++..+ ..+...+ +|++|++++|.+++..+..+. .. ++|++|++++|.+++.
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~ 211 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK 211 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence 112 2355555555555543222 2223333 555555555555544443322 22 3555555555555532
Q ss_pred ----ccccccC-CCCCCEEeccCCcccccchh----hhhCCCCCCEEEcccC
Q 023644 210 ----IPREFGN-LAELERMSLATNKLQGMIIN----FLQFDSSLCLLLYSFV 252 (279)
Q Consensus 210 ----~p~~l~~-l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~l~~n 252 (279)
++..+.. .++|++|++++|.+++..+. .+..+++|+.|++++|
T Consensus 212 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 212 SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 2333333 23555555555555544332 2234555555555554
No 104
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.77 E-value=4.7e-18 Score=133.37 Aligned_cols=135 Identities=27% Similarity=0.380 Sum_probs=72.5
Q ss_pred CCCCCCccceEecCCCCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCccc
Q 023644 57 SICFCNWTGVTCDLHSHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQ 136 (279)
Q Consensus 57 ~~~~c~w~gv~c~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 136 (279)
..|.|.|+++.|. ++++. .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.++ .
T Consensus 3 ~~C~C~~~~l~~~------------~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~ 66 (177)
T 2o6r_A 3 SRCSCSGTEIRCN------------SKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-S 66 (177)
T ss_dssp TTCEEETTEEECC------------SSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-C
T ss_pred CCCEeCCCEEEec------------CCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-E
Confidence 3466777766664 44444 334332 256777777777777554555566666777777766666 4
Q ss_pred CchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeeccccccc
Q 023644 137 IPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQ 207 (279)
Q Consensus 137 lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 207 (279)
+|...|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 67 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 67 LPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred eChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 55444455555555555555555333333444445555555554444333333344444444444444444
No 105
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=2.6e-18 Score=136.77 Aligned_cols=132 Identities=25% Similarity=0.330 Sum_probs=116.5
Q ss_pred CEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCch-HHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeecc
Q 023644 100 QSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPA-NICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLP 178 (279)
Q Consensus 100 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 178 (279)
+.+++++|.++ .+|..+.. ++++|++++|.++ .++. ..|..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCC-SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCC-ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 78999999996 67776643 8999999999998 5554 445889999999999999998888999999999999999
Q ss_pred CccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcccccch
Q 023644 179 YNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMII 235 (279)
Q Consensus 179 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~ 235 (279)
+|.+++..|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 999998888889999999999999999999889999999999999999999987654
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=3.8e-18 Score=144.59 Aligned_cols=151 Identities=30% Similarity=0.387 Sum_probs=131.3
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
..+++.|++++|.+.+. ++ +..+++|++|++++|.+++ ++ .+..+++|++|++++|.++ .++ .+ ..+++|++|
T Consensus 67 l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~-~~~-~l-~~l~~L~~L 139 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS-DIN-GL-VHLPQLESL 139 (291)
T ss_dssp CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC-CCG-GG-GGCTTCCEE
T ss_pred CCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCC-CCh-hh-cCCCCCCEE
Confidence 46799999999999965 44 8999999999999999985 33 4899999999999999998 554 34 789999999
Q ss_pred EeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCccc
Q 023644 152 SLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQ 231 (279)
Q Consensus 152 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 231 (279)
++++|.+++. ..+..+++|++|++++|.+++..| +..+++|++|++++|.+++ +| .+.++++|+.|++++|.++
T Consensus 140 ~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 140 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred EccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 9999999854 578999999999999999997555 8899999999999999985 44 4899999999999999987
Q ss_pred ccch
Q 023644 232 GMII 235 (279)
Q Consensus 232 ~~~~ 235 (279)
....
T Consensus 214 ~~~~ 217 (291)
T 1h6t_A 214 NKPI 217 (291)
T ss_dssp CCCE
T ss_pred CCcc
Confidence 6443
No 107
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.76 E-value=3.7e-19 Score=155.39 Aligned_cols=182 Identities=22% Similarity=0.227 Sum_probs=144.7
Q ss_pred CCcEEEEEeCCCCCCccCC----ccCCCCC-CCCEEECCCCcCCCcccccccCC-----CCCCEEEccCCcCcccCchHH
Q 023644 72 SHRVTVLNISSLNLTGPIP----AQLGNLS-SLQSLNLSCNRLSGSIPSAIFTI-----YTLKNVSLHKNQLSGQIPANI 141 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~p~~l~~l-----~~L~~L~l~~n~l~~~lp~~~ 141 (279)
..+++.|++++|.+.+..+ ..+..++ +|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 4569999999999997655 6677888 89999999999997777777664 999999999999985555433
Q ss_pred ---hhCC-CCCcEEEeecccCCCCChhhhhc-----CCcCceeeccCccCCCCCccc----ccCCC-Ccceeeccccccc
Q 023644 142 ---CSYL-PFLEVLSLSQNMLHGGIPSTLSN-----CTYLRILSLPYNNFLGAIPKE----IGNLT-KLKLLYIGVNRLQ 207 (279)
Q Consensus 142 ---~~~l-~~L~~L~l~~n~l~~~~p~~~~~-----l~~L~~L~l~~n~l~~~~p~~----l~~l~-~L~~L~l~~n~l~ 207 (279)
+... ++|++|++++|.+++..+..+.. .++|++|++++|.+++..+.. +...+ +|++|++++|.++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 2344 89999999999998776655543 369999999999998654433 44555 9999999999998
Q ss_pred ccccccc----cCC-CCCCEEeccCCccccc----chhhhhC-CCCCCEEEcccCc
Q 023644 208 GEIPREF----GNL-AELERMSLATNKLQGM----IINFLQF-DSSLCLLLYSFVC 253 (279)
Q Consensus 208 ~~~p~~l----~~l-~~L~~L~l~~n~l~~~----~~~~l~~-l~~L~~L~l~~n~ 253 (279)
+..+..+ ... ++|++|++++|.+++. ++..+.. .++|++|++++|.
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 7776544 445 6999999999999874 4555555 4699999999983
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=5.6e-18 Score=141.53 Aligned_cols=163 Identities=23% Similarity=0.245 Sum_probs=136.7
Q ss_pred cEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEe
Q 023644 74 RVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSL 153 (279)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l 153 (279)
+++.++++++.+.+. + .+..+++|++|++++|.++ .++ .+..+++|++|++++|.++ .++. +..+++|++|++
T Consensus 20 ~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEEC
T ss_pred HHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccC-CChh--hccCCCCCEEEC
Confidence 355667777777743 3 4678899999999999998 455 6888999999999999998 6666 489999999999
Q ss_pred ecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCccccc
Q 023644 154 SQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGM 233 (279)
Q Consensus 154 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 233 (279)
++|.+++ +|.. .. ++|++|++++|.+++ ++ .+..+++|++|++++|.+++. + .+..+++|+.|++++|.+++.
T Consensus 93 ~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 9999984 4543 33 899999999999986 33 588999999999999999854 4 688999999999999999987
Q ss_pred chhhhhCCCCCCEEEcccC
Q 023644 234 IINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 234 ~~~~l~~l~~L~~L~l~~n 252 (279)
..+..+++|+.|++++|
T Consensus 166 --~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp --TTSTTCCCCCEEEEEEE
T ss_pred --HHhccCCCCCEEeCCCC
Confidence 67889999999999987
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.75 E-value=5.6e-18 Score=131.74 Aligned_cols=132 Identities=23% Similarity=0.216 Sum_probs=65.8
Q ss_pred CCCCEEECCCCcCC-CcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCcee
Q 023644 97 SSLQSLNLSCNRLS-GSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRIL 175 (279)
Q Consensus 97 ~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 175 (279)
++|++|++++|.++ +.+|..+..+++|++|++++|.++ .+ ..+ ..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~-~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNL-PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC-SSC-CCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch-hhh-ccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 44555555555554 444555555555555555555554 22 222 445555555555555554444444445555555
Q ss_pred eccCccCCCCC-cccccCCCCcceeeccccccccccc---ccccCCCCCCEEeccCCccc
Q 023644 176 SLPYNNFLGAI-PKEIGNLTKLKLLYIGVNRLQGEIP---REFGNLAELERMSLATNKLQ 231 (279)
Q Consensus 176 ~l~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~L~l~~n~l~ 231 (279)
++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 55555554321 1344455555555555555543322 24445555555555555443
No 110
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.75 E-value=1.4e-17 Score=132.65 Aligned_cols=129 Identities=25% Similarity=0.334 Sum_probs=106.6
Q ss_pred CEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccC
Q 023644 100 QSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPY 179 (279)
Q Consensus 100 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 179 (279)
+.+++++|.++ .+|..+. ++|++|++++|.++ .+|..+ ..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~-~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGG-GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHh-hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 57888888887 5676553 58889999999998 788554 8888999999999998877777788888999999999
Q ss_pred ccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCccccc
Q 023644 180 NNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGM 233 (279)
Q Consensus 180 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 233 (279)
|.+++..|..|..+++|++|++++|.+++..+..+.++++|+.|++++|.+...
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 998877777888888999999999998866666788888999999999888653
No 111
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.74 E-value=6.6e-18 Score=131.35 Aligned_cols=132 Identities=20% Similarity=0.167 Sum_probs=117.7
Q ss_pred CCCCCCEEEccCCcCc-ccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcc
Q 023644 119 TIYTLKNVSLHKNQLS-GQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLK 197 (279)
Q Consensus 119 ~l~~L~~L~l~~n~l~-~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 197 (279)
..++|++|++++|.++ +.+|..+ ..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLT-AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCC-GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHHH-HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 3478999999999998 7888775 8899999999999999855 6788999999999999999987888888899999
Q ss_pred eeecccccccccc-cccccCCCCCCEEeccCCcccccch---hhhhCCCCCCEEEcccCc
Q 023644 198 LLYIGVNRLQGEI-PREFGNLAELERMSLATNKLQGMII---NFLQFDSSLCLLLYSFVC 253 (279)
Q Consensus 198 ~L~l~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~~n~ 253 (279)
+|++++|.+++.. +..+.++++|++|++++|.+++..+ ..+..+++|++|+++.|.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 9999999998642 3789999999999999999998766 588899999999999984
No 112
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.74 E-value=2.7e-18 Score=130.89 Aligned_cols=127 Identities=19% Similarity=0.196 Sum_probs=65.7
Q ss_pred CCCCEEECCCCcCC-CcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCcee
Q 023644 97 SSLQSLNLSCNRLS-GSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRIL 175 (279)
Q Consensus 97 ~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 175 (279)
+++++|++++|.++ +.+|..+..+++|++|++++|.++ .+ ..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~--------------------------~~~~~l~~L~~L 69 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI--------------------------ANLPKLNKLKKL 69 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC--------------------------TTCCCCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc--------------------------hhhhcCCCCCEE
Confidence 45556666666555 445555555555555555555554 22 334444444444
Q ss_pred eccCccCCCCCcccccCCCCcceeeccccccccc-ccccccCCCCCCEEeccCCcccccch---hhhhCCCCCCEEEcc
Q 023644 176 SLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGE-IPREFGNLAELERMSLATNKLQGMII---NFLQFDSSLCLLLYS 250 (279)
Q Consensus 176 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~ 250 (279)
++++|.+++.+|..+..+++|++|++++|.+++. .+..+.++++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 70 ~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 70 ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 5544444444444444445555555555555432 22445555555555665555555444 345556666666553
No 113
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.74 E-value=2.6e-17 Score=131.11 Aligned_cols=127 Identities=27% Similarity=0.311 Sum_probs=109.8
Q ss_pred EEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecc
Q 023644 77 VLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQN 156 (279)
Q Consensus 77 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n 156 (279)
.++++++++. .+|..+. +++++|++++|.++ .+|..+..+++|++|++++|.++ .++...|..+++|++|++++|
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCCC
Confidence 4666777777 5665543 68999999999998 77889999999999999999998 677666699999999999999
Q ss_pred cCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccc
Q 023644 157 MLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQG 208 (279)
Q Consensus 157 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 208 (279)
.+++..|..+..+++|++|++++|.++...+..+..+++|+.|++++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9998878889999999999999999997666678899999999999998864
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.3e-17 Score=154.56 Aligned_cols=152 Identities=32% Similarity=0.392 Sum_probs=133.1
Q ss_pred CCcEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEE
Q 023644 72 SHRVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVL 151 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 151 (279)
..+++.|+|++|.+.+..+ +..+++|+.|++++|.+.+ +| .+..+++|++|++++|.++ .++. + ..+++|+.|
T Consensus 64 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~-~l~~-l-~~l~~L~~L 136 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGIS-DING-L-VHLPQLESL 136 (605)
T ss_dssp CTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCC-CCGG-G-GGCTTCSEE
T ss_pred CCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCC-CCcc-c-cCCCccCEE
Confidence 5689999999999996543 8899999999999999985 33 7889999999999999998 5543 4 789999999
Q ss_pred EeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCccc
Q 023644 152 SLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQ 231 (279)
Q Consensus 152 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 231 (279)
++++|.+++. ..+..+++|+.|++++|.+.+..| +..+++|+.|+|++|.+++. | .+..+++|+.|+|++|.+.
T Consensus 137 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 137 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp ECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEE
T ss_pred ECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCc
Confidence 9999999854 578999999999999999997666 88999999999999999864 4 6899999999999999998
Q ss_pred ccchh
Q 023644 232 GMIIN 236 (279)
Q Consensus 232 ~~~~~ 236 (279)
+....
T Consensus 211 ~~p~~ 215 (605)
T 1m9s_A 211 NKPIN 215 (605)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 76443
No 115
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.74 E-value=7e-19 Score=158.16 Aligned_cols=158 Identities=22% Similarity=0.213 Sum_probs=85.7
Q ss_pred cEEEEEeCCCCCCccCCccCCCCCC-------------CCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchH
Q 023644 74 RVTVLNISSLNLTGPIPAQLGNLSS-------------LQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPAN 140 (279)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~~~~l~~-------------L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~ 140 (279)
+++.|++++|.+.|.+|..++.+.+ +++|++++|.+++ +|.. .++|++|++++|.+++ +|+.
T Consensus 35 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~ 109 (454)
T 1jl5_A 35 SKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL 109 (454)
T ss_dssp CHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC
T ss_pred chhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc
Confidence 3444555555555555555555443 2555555555553 2321 2467777777777763 5532
Q ss_pred HhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCC
Q 023644 141 ICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAEL 220 (279)
Q Consensus 141 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 220 (279)
.++|++|++++|.+++ +|.. .++|++|++++|.+++ +| .++.+++|++|++++|.+++ +|..+ ++|
T Consensus 110 ----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L 175 (454)
T 1jl5_A 110 ----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSL 175 (454)
T ss_dssp ----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTC
T ss_pred ----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccc
Confidence 2455555555555542 2211 1456666666666664 55 46666666666666666663 44322 356
Q ss_pred CEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 221 ERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 221 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
++|++++|.+++ +| .++.+++|++|++++|
T Consensus 176 ~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 176 EFIAAGNNQLEE-LP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp CEEECCSSCCSS-CC-CCTTCTTCCEEECCSS
T ss_pred cEEECcCCcCCc-Cc-cccCCCCCCEEECCCC
Confidence 666666666655 33 3556666666666555
No 116
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.74 E-value=3.2e-17 Score=128.60 Aligned_cols=133 Identities=26% Similarity=0.296 Sum_probs=113.2
Q ss_pred CCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeecc
Q 023644 99 LQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLP 178 (279)
Q Consensus 99 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 178 (279)
.+.+++++++++ .+|..+ .++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 578899999887 556544 368999999999998 6777666889999999999999986666667899999999999
Q ss_pred CccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcccccch
Q 023644 179 YNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMII 235 (279)
Q Consensus 179 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~ 235 (279)
+|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+.+..|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999997777778889999999999999996666667889999999999999988765
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.74 E-value=6e-18 Score=128.93 Aligned_cols=128 Identities=20% Similarity=0.158 Sum_probs=102.4
Q ss_pred CCcEEEEEeCCCCCC-ccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcE
Q 023644 72 SHRVTVLNISSLNLT-GPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEV 150 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~ 150 (279)
.++++.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+ ..+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA-EKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH-HHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh-hhCCCCCE
Confidence 457999999999998 78898899999999999999999865 778889999999999999985566554 67888888
Q ss_pred EEeecccCCCC-ChhhhhcCCcCceeeccCccCCCCCc---ccccCCCCcceeecc
Q 023644 151 LSLSQNMLHGG-IPSTLSNCTYLRILSLPYNNFLGAIP---KEIGNLTKLKLLYIG 202 (279)
Q Consensus 151 L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~L~l~ 202 (279)
|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88888888742 33667777777888887777775544 356667777777765
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=8.3e-20 Score=168.23 Aligned_cols=102 Identities=26% Similarity=0.278 Sum_probs=90.0
Q ss_pred CCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEecc
Q 023644 147 FLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLA 226 (279)
Q Consensus 147 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 226 (279)
.|++|++++|.+++ +|. ++.+++|++|++++|.++ .+|..++.+++|++|++++|.+++ +| .++++++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 58889999999984 676 888999999999999988 788889999999999999999985 67 78899999999999
Q ss_pred CCcccccc-hhhhhCCCCCCEEEcccCc
Q 023644 227 TNKLQGMI-INFLQFDSSLCLLLYSFVC 253 (279)
Q Consensus 227 ~n~l~~~~-~~~l~~l~~L~~L~l~~n~ 253 (279)
+|.+++.. |..++.+++|+.|++++|.
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 99999887 8889999999999999983
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=5.3e-18 Score=160.60 Aligned_cols=122 Identities=29% Similarity=0.385 Sum_probs=91.2
Q ss_pred CCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhc
Q 023644 89 IPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSN 168 (279)
Q Consensus 89 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 168 (279)
.+..+..+..|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+ ..+++|++|++++|.++ .+|..++.
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEI-KNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG-GGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhh-hCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 4566777788888888888877 66777777888888888888887 777766 77888888888888887 67777888
Q ss_pred CCcCceeeccCccCCCCCcccccCCCCcceeeccccccccccccccc
Q 023644 169 CTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFG 215 (279)
Q Consensus 169 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~ 215 (279)
+++|++|++++|.++ .+|..|+.+++|++|+|++|.+++.+|..+.
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence 888888888888776 6777788888888888888888877766553
No 120
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.71 E-value=1.6e-17 Score=154.20 Aligned_cols=156 Identities=28% Similarity=0.327 Sum_probs=78.8
Q ss_pred cEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEe
Q 023644 74 RVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSL 153 (279)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l 153 (279)
+++.|++++|.+. .+|. .+++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 62 ~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L~L 128 (622)
T 3g06_A 62 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA----LPSGLCKLWI 128 (622)
T ss_dssp TCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC----CCTTCCEEEC
T ss_pred CCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC----CCCCcCEEEC
Confidence 4455555555554 2333 3445555555555554 2333 3455555555555555 3443 3455556666
Q ss_pred ecccCCCCChhhhhcCCcCceeeccCccCCCCCccccc---CC--------------CCcceeecccccccccccccccC
Q 023644 154 SQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIG---NL--------------TKLKLLYIGVNRLQGEIPREFGN 216 (279)
Q Consensus 154 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~---~l--------------~~L~~L~l~~n~l~~~~p~~l~~ 216 (279)
++|.++ .+|.. +++|++|++++|.+++ +|..+. .+ ++|+.|++++|.+++ +|..+.+
T Consensus 129 ~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~ 202 (622)
T 3g06_A 129 FGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSE 202 (622)
T ss_dssp CSSCCS-CCCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTT
T ss_pred CCCCCC-cCCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccch
Confidence 666555 23432 3566777777776663 232221 12 556666666666663 2222111
Q ss_pred -----------------CCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 217 -----------------LAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 217 -----------------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
+++|+.|++++|.+++ +| ..+++|++|++++|
T Consensus 203 L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N 251 (622)
T 3g06_A 203 LYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGN 251 (622)
T ss_dssp CCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSS
T ss_pred hhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCC
Confidence 1445555555555554 22 33456666666665
No 121
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.71 E-value=9.5e-19 Score=157.16 Aligned_cols=178 Identities=21% Similarity=0.172 Sum_probs=96.4
Q ss_pred cEEEEEeCCCCCCcc----CCccCCCCCCCCEEECCCCcCCCcc-----cccccCCCCCCEEEccCCcCccc----CchH
Q 023644 74 RVTVLNISSLNLTGP----IPAQLGNLSSLQSLNLSCNRLSGSI-----PSAIFTIYTLKNVSLHKNQLSGQ----IPAN 140 (279)
Q Consensus 74 ~l~~L~l~~~~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-----p~~l~~l~~L~~L~l~~n~l~~~----lp~~ 140 (279)
+++.|++++|.+.+. ++..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++. ++..
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 344444444444431 2333344455555555555544221 11112345555555555555421 3333
Q ss_pred HhhCCCCCcEEEeecccCCCCChhhhhc-----CCcCceeeccCccCCCC----CcccccCCCCcceeeccccccccccc
Q 023644 141 ICSYLPFLEVLSLSQNMLHGGIPSTLSN-----CTYLRILSLPYNNFLGA----IPKEIGNLTKLKLLYIGVNRLQGEIP 211 (279)
Q Consensus 141 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~-----l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~~p 211 (279)
+ ..+++|++|++++|.+++..+..+.. .++|++|++++|.+++. ++..+..+++|++|++++|.+++..+
T Consensus 280 l-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 358 (461)
T 1z7x_W 280 L-RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358 (461)
T ss_dssp H-HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred H-hhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH
Confidence 3 44555555555555554332222221 14566666666665543 34445556777777777777765544
Q ss_pred ccccC-----CCCCCEEeccCCcccc----cchhhhhCCCCCCEEEcccC
Q 023644 212 REFGN-----LAELERMSLATNKLQG----MIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 212 ~~l~~-----l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n 252 (279)
..+.+ .++|++|++++|.+++ .+|..+..+++|++|++++|
T Consensus 359 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 359 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred HHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 43332 5678888888887775 56777777888888888877
No 122
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.70 E-value=2e-16 Score=142.07 Aligned_cols=137 Identities=27% Similarity=0.360 Sum_probs=87.6
Q ss_pred CCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceee
Q 023644 97 SSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILS 176 (279)
Q Consensus 97 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 176 (279)
++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|.. ..+|++|++++|.+++ +| .+..+++|++|+
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence 466666666666664 55 4666667777777777666 35532 2467777777776664 44 466777777777
Q ss_pred ccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 177 LPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 177 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
+++|.+++ +|... ++|++|++++|.++ .+| .+.++++|++|++++|.+++ +|. .+++|++|++++|
T Consensus 202 l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N 267 (454)
T 1jl5_A 202 ADNNSLKK-LPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDN 267 (454)
T ss_dssp CCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSS
T ss_pred CCCCcCCc-CCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCC
Confidence 77777664 44322 46777777777776 566 37777788888888887775 332 2356666666665
No 123
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.69 E-value=4.1e-16 Score=144.82 Aligned_cols=75 Identities=24% Similarity=0.153 Sum_probs=51.7
Q ss_pred CcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEc
Q 023644 170 TYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLY 249 (279)
Q Consensus 170 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 249 (279)
++|++|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|..+..+++|+.|++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 445555666665553 33 23456677777777776 4554 5677888888888888 56777888888888888
Q ss_pred ccCc
Q 023644 250 SFVC 253 (279)
Q Consensus 250 ~~n~ 253 (279)
++|.
T Consensus 292 ~~N~ 295 (622)
T 3g06_A 292 EGNP 295 (622)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 8873
No 124
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.69 E-value=5.4e-18 Score=152.24 Aligned_cols=178 Identities=20% Similarity=0.192 Sum_probs=99.6
Q ss_pred cEEEEEeCCCCCCc----cCCccCCCCCCCCEEECCCCcCCCccccccc-----CCCCCCEEEccCCcCcccC----chH
Q 023644 74 RVTVLNISSLNLTG----PIPAQLGNLSSLQSLNLSCNRLSGSIPSAIF-----TIYTLKNVSLHKNQLSGQI----PAN 140 (279)
Q Consensus 74 ~l~~L~l~~~~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~-----~l~~L~~L~l~~n~l~~~l----p~~ 140 (279)
+++.|++++|.+.. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++.. +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 57788888877773 4566677777777777777776543333222 2345777777777666322 222
Q ss_pred HhhCCCCCcEEEeecccCCCCChhhhh-----cCCcCceeeccCccCCCC----CcccccCCCCcceeecccccccccc-
Q 023644 141 ICSYLPFLEVLSLSQNMLHGGIPSTLS-----NCTYLRILSLPYNNFLGA----IPKEIGNLTKLKLLYIGVNRLQGEI- 210 (279)
Q Consensus 141 ~~~~l~~L~~L~l~~n~l~~~~p~~~~-----~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~~- 210 (279)
+ ..+++|++|++++|.++...+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++..
T Consensus 166 l-~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 166 L-RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp H-HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred H-hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 2 4456666666666666533333332 244666666666665542 3444455566666666666555321
Q ss_pred ----cccccCCCCCCEEeccCCccccc----chhhhhCCCCCCEEEcccC
Q 023644 211 ----PREFGNLAELERMSLATNKLQGM----IINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 211 ----p~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n 252 (279)
+..+..+++|++|++++|.+++. ++..+..+++|++|++++|
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 11222455566666666655543 3444445555666666554
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.69 E-value=8.3e-19 Score=140.29 Aligned_cols=146 Identities=25% Similarity=0.326 Sum_probs=109.9
Q ss_pred CCCCEEECCCCcCCCcccc------cccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCC
Q 023644 97 SSLQSLNLSCNRLSGSIPS------AIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCT 170 (279)
Q Consensus 97 ~~L~~L~l~~n~l~~~~p~------~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 170 (279)
..++.++++.+.+.|..|. .+..+++|++|++++|.++ .+| .+ ..+++|++|++++|.++ .+|..+..++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~-~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SL-SGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CH-HHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-cc-ccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 3444555555555554444 7788888888888888887 477 44 77888888888888887 6777777778
Q ss_pred cCceeeccCccCCCCCcccccCCCCcceeeccccccccccc-ccccCCCCCCEEeccCCcccccchh----------hhh
Q 023644 171 YLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIP-REFGNLAELERMSLATNKLQGMIIN----------FLQ 239 (279)
Q Consensus 171 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~----------~l~ 239 (279)
+|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+.++++|++|++++|.+++.+|. .+.
T Consensus 94 ~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 94 TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 88888888888875 44 57778888888888888874332 4678888899999999988877654 377
Q ss_pred CCCCCCEEE
Q 023644 240 FDSSLCLLL 248 (279)
Q Consensus 240 ~l~~L~~L~ 248 (279)
.+++|+.||
T Consensus 172 ~l~~L~~Ld 180 (198)
T 1ds9_A 172 RLPNLKKLD 180 (198)
T ss_dssp HCSSCSEEC
T ss_pred hCCCcEEEC
Confidence 889999887
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=1e-18 Score=160.97 Aligned_cols=122 Identities=22% Similarity=0.273 Sum_probs=109.3
Q ss_pred CCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeec
Q 023644 122 TLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYI 201 (279)
Q Consensus 122 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 201 (279)
.|+.|++++|.++ .+|. + ..+++|++|++++|.++ .+|..++.+++|++|++++|.+++ +| .++.+++|++|++
T Consensus 442 ~L~~L~Ls~n~l~-~lp~-~-~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLT-VLCH-L-EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCS-SCCC-G-GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCC-CCcC-c-cccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 5789999999998 6886 4 89999999999999999 889999999999999999999996 67 8999999999999
Q ss_pred ccccccccc-cccccCCCCCCEEeccCCcccccchh---hhhCCCCCCEEEc
Q 023644 202 GVNRLQGEI-PREFGNLAELERMSLATNKLQGMIIN---FLQFDSSLCLLLY 249 (279)
Q Consensus 202 ~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l 249 (279)
++|.+++.. |..+.++++|+.|++++|.+++.+|. .+..+++|+.|++
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999877 99999999999999999999987653 3446899999874
No 127
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=4.6e-17 Score=141.47 Aligned_cols=174 Identities=18% Similarity=0.123 Sum_probs=126.0
Q ss_pred CCcEEEEEeCCCCCCccCC-ccCCCCCCCCE-EECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCc
Q 023644 72 SHRVTVLNISSLNLTGPIP-AQLGNLSSLQS-LNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLE 149 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~-~~~~~l~~L~~-L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~ 149 (279)
..+++.|++++|.+.+.+| ..|.+++++++ +.+.+|+++...|..|..+++|++|++++|.+. .+|+..+.....+.
T Consensus 53 l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~ 131 (350)
T 4ay9_X 53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKV 131 (350)
T ss_dssp CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCE
T ss_pred CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhh
Confidence 5689999999999876665 46788888775 566678998777888999999999999999998 66665556667788
Q ss_pred EEEeec-ccCCCCChhhhhcCC-cCceeeccCccCCCCCcccccCCCCcceeeccc-cccccccc-ccccCCCCCCEEec
Q 023644 150 VLSLSQ-NMLHGGIPSTLSNCT-YLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGV-NRLQGEIP-REFGNLAELERMSL 225 (279)
Q Consensus 150 ~L~l~~-n~l~~~~p~~~~~l~-~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~-n~l~~~~p-~~l~~l~~L~~L~l 225 (279)
.+++.+ +.+....+..+..+. .+++|++++|.++ .+|.......+|+++++++ |.++ .+| ..|.++++|++|++
T Consensus 132 ~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdL 209 (350)
T 4ay9_X 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDI 209 (350)
T ss_dssp EEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEEC
T ss_pred hhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhc
Confidence 888866 455533334455553 5788888888887 4555555567788888875 5555 554 45788888888888
Q ss_pred cCCcccccchhhhhCCCCCCEEEccc
Q 023644 226 ATNKLQGMIINFLQFDSSLCLLLYSF 251 (279)
Q Consensus 226 ~~n~l~~~~~~~l~~l~~L~~L~l~~ 251 (279)
++|.++...+..+ .+|+.|.+..
T Consensus 210 s~N~l~~lp~~~~---~~L~~L~~l~ 232 (350)
T 4ay9_X 210 SRTRIHSLPSYGL---ENLKKLRARS 232 (350)
T ss_dssp TTSCCCCCCSSSC---TTCCEEECTT
T ss_pred CCCCcCccChhhh---ccchHhhhcc
Confidence 8888886554333 3444444433
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.67 E-value=1.4e-16 Score=124.93 Aligned_cols=131 Identities=15% Similarity=0.173 Sum_probs=63.3
Q ss_pred CCCCCCCCEEECCCCcCCCcccccccCC-CCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCc
Q 023644 93 LGNLSSLQSLNLSCNRLSGSIPSAIFTI-YTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTY 171 (279)
Q Consensus 93 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l-~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 171 (279)
+....+|++|++++|.++ .+|. +..+ ++|++|++++|.++ .+ +.+ ..+++|++|++++|.+++..+..+..+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~-~~-~~l-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIR-KL-DGF-PLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCC-EE-CCC-CCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCC-cc-ccc-ccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 344555666666666655 2333 2222 25666666666555 23 222 44555555555555555322222345555
Q ss_pred CceeeccCccCCCCCcc--cccCCCCcceeeccccccccccccc----ccCCCCCCEEeccCCcc
Q 023644 172 LRILSLPYNNFLGAIPK--EIGNLTKLKLLYIGVNRLQGEIPRE----FGNLAELERMSLATNKL 230 (279)
Q Consensus 172 L~~L~l~~n~l~~~~p~--~l~~l~~L~~L~l~~n~l~~~~p~~----l~~l~~L~~L~l~~n~l 230 (279)
|++|++++|.+. .+|. .+..+++|++|++++|.++ .+|.. +..+++|+.|++++|..
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 555555555553 3333 4444555555555555554 23332 44445555555544443
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.66 E-value=6.4e-19 Score=140.95 Aligned_cols=150 Identities=23% Similarity=0.298 Sum_probs=123.6
Q ss_pred EEEEEeCCCCCCccCCc------cCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCC
Q 023644 75 VTVLNISSLNLTGPIPA------QLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFL 148 (279)
Q Consensus 75 l~~L~l~~~~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L 148 (279)
++.++++.+.+.|.+|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+ ..+++|
T Consensus 20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~-~~~~~L 95 (198)
T 1ds9_A 20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD-AVADTL 95 (198)
T ss_dssp CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH-HHHHHC
T ss_pred ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh-hcCCcC
Confidence 44444455555555554 78899999999999999986 67 8899999999999999998 888765 678999
Q ss_pred cEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCc-ccccCCCCcceeeccccccccccccc----------ccCC
Q 023644 149 EVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIP-KEIGNLTKLKLLYIGVNRLQGEIPRE----------FGNL 217 (279)
Q Consensus 149 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~p~~----------l~~l 217 (279)
++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++.+|.. +..+
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l 173 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence 999999999985 55 68899999999999999985332 47889999999999999998776653 7889
Q ss_pred CCCCEEeccCCcccc
Q 023644 218 AELERMSLATNKLQG 232 (279)
Q Consensus 218 ~~L~~L~l~~n~l~~ 232 (279)
++|+.|+ +|.++.
T Consensus 174 ~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 174 PNLKKLD--GMPVDV 186 (198)
T ss_dssp SSCSEEC--CGGGTT
T ss_pred CCcEEEC--CcccCH
Confidence 9999987 676654
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.64 E-value=3.2e-16 Score=122.82 Aligned_cols=129 Identities=15% Similarity=0.128 Sum_probs=64.5
Q ss_pred cCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcc
Q 023644 118 FTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLK 197 (279)
Q Consensus 118 ~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 197 (279)
....+|++|++++|.++ .+|. +....++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 34455555555555555 4433 212233555555555555532 3455555555555555555533223334555555
Q ss_pred eeecccccccccccc--cccCCCCCCEEeccCCcccccchh----hhhCCCCCCEEEcccC
Q 023644 198 LLYIGVNRLQGEIPR--EFGNLAELERMSLATNKLQGMIIN----FLQFDSSLCLLLYSFV 252 (279)
Q Consensus 198 ~L~l~~n~l~~~~p~--~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~l~~n 252 (279)
+|++++|.++ .+|. .+.++++|++|++++|.++.. |. .+..+++|+.|+++.|
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEEC
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcC
Confidence 5555555554 3333 455555555555555555432 22 2455555555555554
No 131
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.60 E-value=5.8e-15 Score=115.03 Aligned_cols=108 Identities=24% Similarity=0.231 Sum_probs=77.4
Q ss_pred CCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecc
Q 023644 123 LKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIG 202 (279)
Q Consensus 123 L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 202 (279)
.+.+++++|.++ .+|..+ .++|++|++++|.+++..|..+..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 456667777666 566544 3667777777777776666677777777777777777776655666777788888888
Q ss_pred cccccccccccccCCCCCCEEeccCCcccccc
Q 023644 203 VNRLQGEIPREFGNLAELERMSLATNKLQGMI 234 (279)
Q Consensus 203 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 234 (279)
+|.+++..+..+.++++|++|++++|.++...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 88887665666777888888888888776553
No 132
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.59 E-value=1e-14 Score=113.60 Aligned_cols=105 Identities=26% Similarity=0.303 Sum_probs=86.7
Q ss_pred EEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecc
Q 023644 77 VLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQN 156 (279)
Q Consensus 77 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n 156 (279)
.++++++++.. +|..+. +++++|++++|.+++..|..|..+++|++|++++|+++ .+|...|..+++|++|++++|
T Consensus 13 ~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 13 TVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp EEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECCCC
Confidence 56677888874 666553 78999999999999877888899999999999999998 777777788899999999999
Q ss_pred cCCCCChhhhhcCCcCceeeccCccCCCC
Q 023644 157 MLHGGIPSTLSNCTYLRILSLPYNNFLGA 185 (279)
Q Consensus 157 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 185 (279)
.+++..+..+..+++|++|++++|.+...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 98866666688888888999988888754
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.57 E-value=1.3e-14 Score=113.54 Aligned_cols=106 Identities=23% Similarity=0.220 Sum_probs=66.9
Q ss_pred CEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeeccc
Q 023644 124 KNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGV 203 (279)
Q Consensus 124 ~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 203 (279)
+.+++++|.++ .+|..+ .++|++|++++|.+++..|..+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 45566666664 555544 25566666666666655566666666677777777766654444456667777777777
Q ss_pred ccccccccccccCCCCCCEEeccCCccccc
Q 023644 204 NRLQGEIPREFGNLAELERMSLATNKLQGM 233 (279)
Q Consensus 204 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 233 (279)
|.+++..+..+.++++|++|++++|.+...
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 777654444566677777777777776644
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.54 E-value=2.7e-14 Score=111.61 Aligned_cols=103 Identities=20% Similarity=0.225 Sum_probs=93.0
Q ss_pred CcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccC
Q 023644 148 LEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLAT 227 (279)
Q Consensus 148 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 227 (279)
-+.+++++|.++ .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|++++..+..+.++++|++|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 478999999997 7787664 7999999999999988899999999999999999999976666689999999999999
Q ss_pred CcccccchhhhhCCCCCCEEEcccCc
Q 023644 228 NKLQGMIINFLQFDSSLCLLLYSFVC 253 (279)
Q Consensus 228 n~l~~~~~~~l~~l~~L~~L~l~~n~ 253 (279)
|.+++..+..+..+++|++|++++|.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CccceeCHHHhccccCCCEEEeCCCC
Confidence 99998877779999999999999983
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=1.6e-14 Score=124.26 Aligned_cols=176 Identities=15% Similarity=0.093 Sum_probs=126.1
Q ss_pred CcEEEEEeCCCCCC--------------------ccCCccCCC--------CCCCCEEECCCCcCCCcccccccCCCCCC
Q 023644 73 HRVTVLNISSLNLT--------------------GPIPAQLGN--------LSSLQSLNLSCNRLSGSIPSAIFTIYTLK 124 (279)
Q Consensus 73 ~~l~~L~l~~~~l~--------------------~~~~~~~~~--------l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 124 (279)
++++.|||++|.+. ..-+..|.+ +++|+.+++.+ .++..-+.+|.++++|+
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~ 127 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLK 127 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCC
T ss_pred ccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccc
Confidence 46778888877766 111234556 88888888888 77756667788888899
Q ss_pred EEEccCCcCcccCchHHhhCCCCCcEEEeecccC-------C-------------------CCChhh-------------
Q 023644 125 NVSLHKNQLSGQIPANICSYLPFLEVLSLSQNML-------H-------------------GGIPST------------- 165 (279)
Q Consensus 125 ~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l-------~-------------------~~~p~~------------- 165 (279)
.+++++|.+. .+++..|....++.++....+.. . +.++..
T Consensus 128 ~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 128 ICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp EEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred eEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 9999888887 67777666665555554433110 0 001110
Q ss_pred --------------h-hcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCC-EEeccCCc
Q 023644 166 --------------L-SNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELE-RMSLATNK 229 (279)
Q Consensus 166 --------------~-~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~-~L~l~~n~ 229 (279)
+ ..+++|+.+++++|.++...+..|.++++|+.+++.+| ++...+.+|.++++|+ .+++.+ .
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~ 284 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S 284 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c
Confidence 0 13778999999998888655667888999999999888 6656667788999999 999988 6
Q ss_pred ccccchhhhhCCCCCCEEEcccC
Q 023644 230 LQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 230 l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
++...+..|.++++|+.++++.|
T Consensus 285 l~~I~~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 285 VTAIEFGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp CCEECTTTTTTCTTEEEEEECSS
T ss_pred ceEEchhhhhCCccCCEEEeCCC
Confidence 77777788899999999998765
No 136
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.48 E-value=3.8e-15 Score=130.36 Aligned_cols=170 Identities=19% Similarity=0.172 Sum_probs=119.8
Q ss_pred CCcEEEEEeCCCCCCccCCc----cCC-CCCCCCEEECCCCcCCCcccccc-cCCCCCCEEEccCCcCcccCchHH----
Q 023644 72 SHRVTVLNISSLNLTGPIPA----QLG-NLSSLQSLNLSCNRLSGSIPSAI-FTIYTLKNVSLHKNQLSGQIPANI---- 141 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~~~~~----~~~-~l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~l~~n~l~~~lp~~~---- 141 (279)
..+++.|++++|.+...... .+. ...+|++|++++|.++......+ ..+++|++|++++|.++..-...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 34688999999998743222 222 23689999999998874433333 345688999999998873222222
Q ss_pred hhCCCCCcEEEeecccCCCC----ChhhhhcCCcCceeeccCccCCCC----CcccccCCCCcceeeccccccccc----
Q 023644 142 CSYLPFLEVLSLSQNMLHGG----IPSTLSNCTYLRILSLPYNNFLGA----IPKEIGNLTKLKLLYIGVNRLQGE---- 209 (279)
Q Consensus 142 ~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~---- 209 (279)
....++|++|++++|.++.. ++..+...++|++|++++|.+.+. ++..+...++|++|++++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 12467899999999988642 444556788899999999988653 245566677899999999998753
Q ss_pred ccccccCCCCCCEEeccCCcccccchhhhhCC
Q 023644 210 IPREFGNLAELERMSLATNKLQGMIINFLQFD 241 (279)
Q Consensus 210 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 241 (279)
+...+...++|++|++++|.++......+..+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDL 262 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence 34455567889999999999887766666543
No 137
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.43 E-value=1.3e-14 Score=134.18 Aligned_cols=87 Identities=14% Similarity=0.094 Sum_probs=54.5
Q ss_pred hhcCCcCceeeccCc--cCCCCCccccc-CCCCcceeecccccccc-cccccccCCCCCCEEeccCCccccc-chhhhhC
Q 023644 166 LSNCTYLRILSLPYN--NFLGAIPKEIG-NLTKLKLLYIGVNRLQG-EIPREFGNLAELERMSLATNKLQGM-IINFLQF 240 (279)
Q Consensus 166 ~~~l~~L~~L~l~~n--~l~~~~p~~l~-~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~ 240 (279)
+..+++|++|+++.+ .+++..+..+. .+++|++|++++|.+++ .++..+.++++|++|++++|.+++. ++.....
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 511 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence 334455555555422 13332222222 35678888888887775 3445567788888888888887655 3445567
Q ss_pred CCCCCEEEcccC
Q 023644 241 DSSLCLLLYSFV 252 (279)
Q Consensus 241 l~~L~~L~l~~n 252 (279)
+++|++|++++|
T Consensus 512 l~~L~~L~ls~n 523 (592)
T 3ogk_B 512 LPSLRYLWVQGY 523 (592)
T ss_dssp CSSCCEEEEESC
T ss_pred cCccCeeECcCC
Confidence 888888888886
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.42 E-value=4.6e-15 Score=129.82 Aligned_cols=158 Identities=22% Similarity=0.174 Sum_probs=116.7
Q ss_pred CCCCCEEECCCCcCCCcccccccC-----CCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhh---
Q 023644 96 LSSLQSLNLSCNRLSGSIPSAIFT-----IYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLS--- 167 (279)
Q Consensus 96 l~~L~~L~l~~n~l~~~~p~~l~~-----l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--- 167 (279)
.++|+.|++++|.++......+.. .++|++|++++|.++..-...+...+.+|++|++++|.++......++
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467889999999987544433322 268999999999987433334434567899999999998754444442
Q ss_pred --cCCcCceeeccCccCCCC----CcccccCCCCcceeeccccccccc----ccccccCCCCCCEEeccCCccccc----
Q 023644 168 --NCTYLRILSLPYNNFLGA----IPKEIGNLTKLKLLYIGVNRLQGE----IPREFGNLAELERMSLATNKLQGM---- 233 (279)
Q Consensus 168 --~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~---- 233 (279)
..++|++|++++|.++.. ++..+...++|++|++++|.+++. ++..+...++|+.|++++|.++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 457899999999988642 344456778899999999998753 356677788999999999998864
Q ss_pred chhhhhCCCCCCEEEcccCc
Q 023644 234 IINFLQFDSSLCLLLYSFVC 253 (279)
Q Consensus 234 ~~~~l~~l~~L~~L~l~~n~ 253 (279)
++..+...++|++|++++|.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHhCCCCCEEeccCCC
Confidence 33455567899999999983
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.41 E-value=8.2e-14 Score=128.77 Aligned_cols=175 Identities=10% Similarity=0.024 Sum_probs=91.6
Q ss_pred cEEEEEeCCCC-CCc-cCCccCCCCCCCCEEECCCCcCCCc----ccccccCCCCCCEEEccCCcCc----ccCchHHhh
Q 023644 74 RVTVLNISSLN-LTG-PIPAQLGNLSSLQSLNLSCNRLSGS----IPSAIFTIYTLKNVSLHKNQLS----GQIPANICS 143 (279)
Q Consensus 74 ~l~~L~l~~~~-l~~-~~~~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~----~~lp~~~~~ 143 (279)
+++.|+++++. +.. .++.....+++|++|++++|.+++. ++..+..+++|++|++++|.++ +.++.. +.
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~-~~ 217 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETI-AR 217 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHH-HH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHH-Hh
Confidence 37777776665 110 1122223566777777777765543 3333445666667777666665 122222 24
Q ss_pred CCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCcc--------------------------CCCCCcccccCCCCcc
Q 023644 144 YLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNN--------------------------FLGAIPKEIGNLTKLK 197 (279)
Q Consensus 144 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~--------------------------l~~~~p~~l~~l~~L~ 197 (279)
.+++|++|++++|.+. .+|..+..+++|++++++... ..+.+|..+..+++|+
T Consensus 218 ~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR 296 (592)
T ss_dssp HCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCC
T ss_pred hCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCc
Confidence 5666666666666655 245555555555555554211 1223444455566666
Q ss_pred eeeccccccccccc-ccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcc
Q 023644 198 LLYIGVNRLQGEIP-REFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYS 250 (279)
Q Consensus 198 ~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 250 (279)
+|++++|.+++... ..+.++++|++|+++++...+.++.....+++|++|+++
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence 67776666554332 234556666666666332222333333455666666665
No 140
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.41 E-value=1.3e-12 Score=113.01 Aligned_cols=112 Identities=21% Similarity=0.241 Sum_probs=88.5
Q ss_pred CCC-CCCccceEecCCCCcEEEEEeCCC-CCCccCCccCCCCCCCCEEECCC-CcCCCcccccccCCCCCCEEEccCCcC
Q 023644 57 SIC-FCNWTGVTCDLHSHRVTVLNISSL-NLTGPIPAQLGNLSSLQSLNLSC-NRLSGSIPSAIFTIYTLKNVSLHKNQL 133 (279)
Q Consensus 57 ~~~-~c~w~gv~c~~~~~~l~~L~l~~~-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~L~l~~n~l 133 (279)
..| .|.|..+.|. ++ ++. .+|. +..+.+|++|+|++ |.+++..+..|..+++|++|+|++|++
T Consensus 3 ~~c~~C~~~~v~~~------------~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 68 (347)
T 2ifg_A 3 DACCPHGSSGLRCT------------RDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68 (347)
T ss_dssp SSSCCSSSSCEECC------------SSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCC
T ss_pred CcCccccCCEEEcC------------CCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcc
Confidence 346 6877766664 44 666 4677 88899999999996 999877778899999999999999999
Q ss_pred cccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCC
Q 023644 134 SGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLG 184 (279)
Q Consensus 134 ~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 184 (279)
+ .+++..|..+++|++|++++|.+++..+..+..+. |++|++.+|.+..
T Consensus 69 ~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 69 R-FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp C-EECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred c-eeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 8 45555568999999999999999855444555554 9999999998874
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.38 E-value=9.6e-13 Score=113.83 Aligned_cols=106 Identities=17% Similarity=0.155 Sum_probs=90.2
Q ss_pred CEEEccCC-cCcccCchHHhhCCCCCcEEEeec-ccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeec
Q 023644 124 KNVSLHKN-QLSGQIPANICSYLPFLEVLSLSQ-NMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYI 201 (279)
Q Consensus 124 ~~L~l~~n-~l~~~lp~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 201 (279)
..++.+++ .++ .+|. + ..+.+|++|++++ |.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|
T Consensus 11 ~~v~~~~~n~l~-~ip~-l-~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-L-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCT-TTTT-S-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCC-ccCC-C-CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 35688887 888 7998 5 8889999999996 9998777788999999999999999999888888999999999999
Q ss_pred ccccccccccccccCCCCCCEEeccCCccccc
Q 023644 202 GVNRLQGEIPREFGNLAELERMSLATNKLQGM 233 (279)
Q Consensus 202 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 233 (279)
++|++++..+..+..++ |+.|++++|.+...
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 99999966555566555 99999999998754
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.36 E-value=1.7e-12 Score=111.55 Aligned_cols=175 Identities=18% Similarity=0.159 Sum_probs=126.9
Q ss_pred cEEEEEeCCCCCCccCCccCCC-CCCCCEEECCCCcCC--------------------CcccccccC--------CCCCC
Q 023644 74 RVTVLNISSLNLTGPIPAQLGN-LSSLQSLNLSCNRLS--------------------GSIPSAIFT--------IYTLK 124 (279)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~~~~-l~~L~~L~l~~n~l~--------------------~~~p~~l~~--------l~~L~ 124 (279)
+++.|.++++ +...--..+.. +++|+.|++++|++. ...+.+|.+ +++|+
T Consensus 26 ~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~ 104 (329)
T 3sb4_A 26 SITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLE 104 (329)
T ss_dssp HCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCC
T ss_pred ceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCc
Confidence 4677777653 11110012222 788999999999887 112335667 89999
Q ss_pred EEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccC----C-----------------
Q 023644 125 NVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNF----L----------------- 183 (279)
Q Consensus 125 ~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l----~----------------- 183 (279)
.+++.+ .++ .+++..|.++++|+++++.+|.+....+..|..+.++..+....+.. .
T Consensus 105 ~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i 182 (329)
T 3sb4_A 105 KVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTI 182 (329)
T ss_dssp C-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEE
T ss_pred EEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeE
Confidence 999999 887 89988889999999999999988766666777777777666544211 0
Q ss_pred -----CCCcccc----------------------------cCCCCcceeecccccccccccccccCCCCCCEEeccCCcc
Q 023644 184 -----GAIPKEI----------------------------GNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKL 230 (279)
Q Consensus 184 -----~~~p~~l----------------------------~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l 230 (279)
+.++..+ ..+++|+.+++++|.++...+.+|.++++|+.+++.+| +
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i 261 (329)
T 3sb4_A 183 QVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-L 261 (329)
T ss_dssp EECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-C
T ss_pred EecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-c
Confidence 0000000 02679999999999999666677999999999999998 7
Q ss_pred cccchhhhhCCCCCC-EEEcccC
Q 023644 231 QGMIINFLQFDSSLC-LLLYSFV 252 (279)
Q Consensus 231 ~~~~~~~l~~l~~L~-~L~l~~n 252 (279)
+...+..|.++++|+ .+++..+
T Consensus 262 ~~I~~~aF~~~~~L~~~l~l~~~ 284 (329)
T 3sb4_A 262 KTIGQRVFSNCGRLAGTLELPAS 284 (329)
T ss_dssp CEECTTTTTTCTTCCEEEEECTT
T ss_pred ceehHHHhhCChhccEEEEEccc
Confidence 777778999999999 9999764
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.28 E-value=2.5e-13 Score=125.48 Aligned_cols=178 Identities=17% Similarity=0.111 Sum_probs=85.4
Q ss_pred CcEEEEEeCCCCCCccC-CccCCCCCCCCEEECCCCcCCCc-ccccccCCCCCCEEEccC---------CcCcccCchHH
Q 023644 73 HRVTVLNISSLNLTGPI-PAQLGNLSSLQSLNLSCNRLSGS-IPSAIFTIYTLKNVSLHK---------NQLSGQIPANI 141 (279)
Q Consensus 73 ~~l~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~l~~---------n~l~~~lp~~~ 141 (279)
.+++.|++++|.+.+.. ...+..+++|++|++++| +... ++.....+++|++|++.. +.+++.....+
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 46888888888866432 222445667777777665 3211 111122355555555522 23321111122
Q ss_pred hhCCCCCcEEEeecccCCCCChhhh------------------------------------hcCCcCceeeccCccCCCC
Q 023644 142 CSYLPFLEVLSLSQNMLHGGIPSTL------------------------------------SNCTYLRILSLPYNNFLGA 185 (279)
Q Consensus 142 ~~~l~~L~~L~l~~n~l~~~~p~~~------------------------------------~~l~~L~~L~l~~n~l~~~ 185 (279)
...+++|++|.+..|.+++..+..+ ..+++|++|++++ .+++.
T Consensus 368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence 1224445555444444443333333 3344444444433 33332
Q ss_pred CcccccC-CCCcceeecccccccccccccc-cCCCCCCEEeccCCcccccchh-hhhCCCCCCEEEcccC
Q 023644 186 IPKEIGN-LTKLKLLYIGVNRLQGEIPREF-GNLAELERMSLATNKLQGMIIN-FLQFDSSLCLLLYSFV 252 (279)
Q Consensus 186 ~p~~l~~-l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n 252 (279)
.+..+.. +++|++|++++|.+++..+..+ .++++|+.|++++|.+++..+. ....+++|++|++++|
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESS
T ss_pred HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC
Confidence 2223322 4556666666666554443333 4456666666666666443332 3334566666666654
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.28 E-value=1.3e-13 Score=127.41 Aligned_cols=155 Identities=15% Similarity=0.119 Sum_probs=110.4
Q ss_pred CCCCCEEECCCCcCCCccccccc-CCCCCCEEEcc--C----CcCcccCch-----HHhhCCCCCcEEEeecccCCCCCh
Q 023644 96 LSSLQSLNLSCNRLSGSIPSAIF-TIYTLKNVSLH--K----NQLSGQIPA-----NICSYLPFLEVLSLSQNMLHGGIP 163 (279)
Q Consensus 96 l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~l~--~----n~l~~~lp~-----~~~~~l~~L~~L~l~~n~l~~~~p 163 (279)
+++|++|.+..+.+++..+..+. .+++|+.|+++ + +.++ ..|. .++..+++|++|++++ .+++..+
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 56666666666666654444443 47788888888 3 4454 2221 1236678888888876 6665555
Q ss_pred hhhhc-CCcCceeeccCccCCCCCcccc-cCCCCcceeecccccccccccc-cccCCCCCCEEeccCCcccccchhhh-h
Q 023644 164 STLSN-CTYLRILSLPYNNFLGAIPKEI-GNLTKLKLLYIGVNRLQGEIPR-EFGNLAELERMSLATNKLQGMIINFL-Q 239 (279)
Q Consensus 164 ~~~~~-l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~L~~L~l~~n~l~~~~~~~l-~ 239 (279)
..++. +++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+. .+..+++|++|++++|.++......+ .
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 528 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQ 528 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHH
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHH
Confidence 56665 8999999999999876555554 5689999999999999765544 44568999999999999876655555 5
Q ss_pred CCCCCCEEEcccC
Q 023644 240 FDSSLCLLLYSFV 252 (279)
Q Consensus 240 ~l~~L~~L~l~~n 252 (279)
.+++|+...+..+
T Consensus 529 ~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 529 KMPKLNVEVIDER 541 (594)
T ss_dssp HCTTEEEEEECSS
T ss_pred hCCCCEEEEecCC
Confidence 7888877777655
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.15 E-value=4.6e-10 Score=98.97 Aligned_cols=171 Identities=13% Similarity=0.063 Sum_probs=96.7
Q ss_pred cEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCC-------
Q 023644 74 RVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLP------- 146 (279)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~------- 146 (279)
+++.+++.. .+...-+..|.++.+|+.+++++|.++.....+|. ..+|+.+.+..+ ++ .++...|..++
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEec
Confidence 355566654 44434445566667777777766655522222222 344555554422 33 34444444444
Q ss_pred ---------------CCcEEEeecccCCCCChhhhhcCCcCceeeccCccCC-----CCCcccccCCCCcceeecccccc
Q 023644 147 ---------------FLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFL-----GAIPKEIGNLTKLKLLYIGVNRL 206 (279)
Q Consensus 147 ---------------~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~-----~~~p~~l~~l~~L~~L~l~~n~l 206 (279)
+|+.+.+. +.++..-...|.++++|+.+.+.+|.+. ...+..|.++++|+.+++.+ .+
T Consensus 234 ~~~l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i 311 (401)
T 4fdw_A 234 PENVSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SI 311 (401)
T ss_dssp CTTCCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TC
T ss_pred CCCccCccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ce
Confidence 45555552 2233333455667777777777666543 23345566777777777773 35
Q ss_pred cccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 207 QGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 207 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
+.....+|.++++|+.+.+..| ++......|.++ +|+.+.+..|
T Consensus 312 ~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 312 RILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp CEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred EEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence 5444556777777777777544 555556667777 7888888776
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.15 E-value=4.2e-10 Score=99.25 Aligned_cols=171 Identities=14% Similarity=0.132 Sum_probs=114.4
Q ss_pred cEEEEEeCCCCCCccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEe
Q 023644 74 RVTVLNISSLNLTGPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSL 153 (279)
Q Consensus 74 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l 153 (279)
+++.+++..+ +...-...|.+ .+|+.+.+.. .++..-+.+|.++++|+.+++.+|.++ .++...|. ..+|+.+.+
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEEC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEe
Confidence 4777777665 55444556777 4799999986 676566678999999999999999998 89998877 589999999
Q ss_pred ecccCCCCChhhhhcCCcCceeeccCccCCCCC----------------------cccccCCCCcceeeccccccc----
Q 023644 154 SQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAI----------------------PKEIGNLTKLKLLYIGVNRLQ---- 207 (279)
Q Consensus 154 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~----------------------p~~l~~l~~L~~L~l~~n~l~---- 207 (279)
..+ ++..-...|.++++|+.+++..+ ++... ...|.++++|+.+++.+|.+.
T Consensus 211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~ 288 (401)
T 4fdw_A 211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPE 288 (401)
T ss_dssp CTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTT
T ss_pred CCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcc
Confidence 855 66455667888888888888764 32222 233444555555555555443
Q ss_pred -ccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 208 -GEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 208 -~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
...+.+|.++++|+.+++. +.++......|.++++|+.+.+..|
T Consensus 289 ~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 289 AMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp CEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred cEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence 1233445556666666665 2344444455666666666666443
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.09 E-value=1.1e-10 Score=101.52 Aligned_cols=177 Identities=14% Similarity=0.121 Sum_probs=103.4
Q ss_pred CCcEEEEEeCCCCCCc-cC-------CccCCCCCCCCEEECCCCcCC---------CcccccccCCCCCCEEEccCCcCc
Q 023644 72 SHRVTVLNISSLNLTG-PI-------PAQLGNLSSLQSLNLSCNRLS---------GSIPSAIFTIYTLKNVSLHKNQLS 134 (279)
Q Consensus 72 ~~~l~~L~l~~~~l~~-~~-------~~~~~~l~~L~~L~l~~n~l~---------~~~p~~l~~l~~L~~L~l~~n~l~ 134 (279)
..+|+.|.+......| .. ..+...+++|+.|.+...... +.+...+..+++|+.|++++|.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3456677776555432 11 122345677888877654321 123344566778888888776311
Q ss_pred ccCchHHhhCCCCCcEEEeecccCCCCChhhhh--cCCcCceeeccC--ccCCCC-----Ccccc--cCCCCcceeeccc
Q 023644 135 GQIPANICSYLPFLEVLSLSQNMLHGGIPSTLS--NCTYLRILSLPY--NNFLGA-----IPKEI--GNLTKLKLLYIGV 203 (279)
Q Consensus 135 ~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~l~~L~~L~l~~--n~l~~~-----~p~~l--~~l~~L~~L~l~~ 203 (279)
.++. + . +++|++|++..+.+.......++ .+++|++|+|+. |...+. +...+ ..+++|++|++.+
T Consensus 186 -~l~~-~-~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~ 261 (362)
T 2ra8_A 186 -SIGK-K-P-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVD 261 (362)
T ss_dssp -BCCS-C-B-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEES
T ss_pred -eecc-c-c-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCC
Confidence 3443 2 2 67788888887776644334444 577888887753 221111 11122 2357788888888
Q ss_pred cccccccccccc---CCCCCCEEeccCCcccccc----hhhhhCCCCCCEEEcccC
Q 023644 204 NRLQGEIPREFG---NLAELERMSLATNKLQGMI----INFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 204 n~l~~~~p~~l~---~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n 252 (279)
|.+.+..+..+. .+++|++|+|+.|.+++.. +..+..+++|+.|+++.|
T Consensus 262 ~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 262 AEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp CTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 877654433332 4677888888888777643 333445678888888776
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.90 E-value=9.2e-10 Score=95.62 Aligned_cols=176 Identities=17% Similarity=0.116 Sum_probs=119.4
Q ss_pred CcEEEEEeCCCCCC---------ccCCccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHh-
Q 023644 73 HRVTVLNISSLNLT---------GPIPAQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANIC- 142 (279)
Q Consensus 73 ~~l~~L~l~~~~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~- 142 (279)
++++.|.+...... +.+...+..+++|+.|++++|.-. .++. + .+++|++|++..+.++......+.
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~ 215 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILG 215 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHH
Confidence 57888888765431 124444567899999999887311 2333 3 378999999999887633333332
Q ss_pred hCCCCCcEEEeec--ccCCCC-----Chhhh--hcCCcCceeeccCccCCCCCcccc---cCCCCcceeeccccccccc-
Q 023644 143 SYLPFLEVLSLSQ--NMLHGG-----IPSTL--SNCTYLRILSLPYNNFLGAIPKEI---GNLTKLKLLYIGVNRLQGE- 209 (279)
Q Consensus 143 ~~l~~L~~L~l~~--n~l~~~-----~p~~~--~~l~~L~~L~l~~n~l~~~~p~~l---~~l~~L~~L~l~~n~l~~~- 209 (279)
..+++|++|+++. |...+. +...+ ..+++|++|++.+|.+.+..+..+ ..+++|++|+++.|.+.+.
T Consensus 216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G 295 (362)
T 2ra8_A 216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG 295 (362)
T ss_dssp SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH
T ss_pred ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH
Confidence 2689999999864 221111 11122 247899999999998875443333 2578999999999999864
Q ss_pred ---ccccccCCCCCCEEeccCCcccccchhhhhC-CCCCCEEEcccCc
Q 023644 210 ---IPREFGNLAELERMSLATNKLQGMIINFLQF-DSSLCLLLYSFVC 253 (279)
Q Consensus 210 ---~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~l~~n~ 253 (279)
++..+.++++|+.|++++|.++......+.. + ...++++.+.
T Consensus 296 ~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 296 ARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 3444456799999999999988766555553 3 4568888764
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.80 E-value=2.4e-11 Score=100.84 Aligned_cols=80 Identities=25% Similarity=0.250 Sum_probs=43.0
Q ss_pred cCCcCceeeccCccCCC--CCcccccCCCCcceeecccccccccccccccCCC--CCCEEeccCCcccccch-------h
Q 023644 168 NCTYLRILSLPYNNFLG--AIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLA--ELERMSLATNKLQGMII-------N 236 (279)
Q Consensus 168 ~l~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~--~L~~L~l~~n~l~~~~~-------~ 236 (279)
.+++|++|+|++|.+++ .+|..+..+++|+.|+|++|.+++. ..+..+. +|++|++++|.+.+..| .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 34455555555555554 2334444555566666666665543 1222222 66666666666665433 2
Q ss_pred hhhCCCCCCEEEc
Q 023644 237 FLQFDSSLCLLLY 249 (279)
Q Consensus 237 ~l~~l~~L~~L~l 249 (279)
.+..+++|+.||-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 3556777777764
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.71 E-value=8.2e-09 Score=81.10 Aligned_cols=59 Identities=22% Similarity=0.338 Sum_probs=29.6
Q ss_pred CCcceeeccccccccc----ccccccCCCCCCEEec--cCCccccc----chhhhhCCCCCCEEEcccC
Q 023644 194 TKLKLLYIGVNRLQGE----IPREFGNLAELERMSL--ATNKLQGM----IINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 194 ~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l--~~n~l~~~----~~~~l~~l~~L~~L~l~~n 252 (279)
++|++|++++|.+.+. +...+...+.|++|++ ++|.+... +.+.+...++|++|++++|
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 3455555555554432 2333444455666666 55555543 2233444566666666665
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.69 E-value=5.5e-09 Score=82.11 Aligned_cols=87 Identities=15% Similarity=0.152 Sum_probs=47.0
Q ss_pred CCCCcEEEeecccCCCC----ChhhhhcCCcCceeeccCccCCCC----CcccccCCCCcceeec--cccccccc----c
Q 023644 145 LPFLEVLSLSQNMLHGG----IPSTLSNCTYLRILSLPYNNFLGA----IPKEIGNLTKLKLLYI--GVNRLQGE----I 210 (279)
Q Consensus 145 l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l--~~n~l~~~----~ 210 (279)
.++|++|++++|.+... +...+...++|++|++++|.+... +...+...++|++|++ ++|.+... +
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l 143 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI 143 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence 34455555555544421 222333445566666666655532 2333444556777777 66766543 2
Q ss_pred cccccCCCCCCEEeccCCccc
Q 023644 211 PREFGNLAELERMSLATNKLQ 231 (279)
Q Consensus 211 p~~l~~l~~L~~L~l~~n~l~ 231 (279)
...+...+.|++|++++|.+.
T Consensus 144 ~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 144 ANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCcCEEeccCCCCC
Confidence 334445577778888777764
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.68 E-value=1.5e-09 Score=89.93 Aligned_cols=152 Identities=24% Similarity=0.267 Sum_probs=97.1
Q ss_pred CCCccceEecCCCCcEEEEEeCCC---CCCccCCc-cCCCC---------CCCCEEECCCCcCCCcccccccCCCCCCE-
Q 023644 60 FCNWTGVTCDLHSHRVTVLNISSL---NLTGPIPA-QLGNL---------SSLQSLNLSCNRLSGSIPSAIFTIYTLKN- 125 (279)
Q Consensus 60 ~c~w~gv~c~~~~~~l~~L~l~~~---~l~~~~~~-~~~~l---------~~L~~L~l~~n~l~~~~p~~l~~l~~L~~- 125 (279)
.|.|.|+.|+....+|..+...+. .+.+.+++ .+..+ ..-+.|+++. +...+.|+.
T Consensus 77 l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~~l~~ryn~~~~~LdLs~----------l~~dp~L~~~ 146 (267)
T 3rw6_A 77 LKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKG----------LRSDPDLVAQ 146 (267)
T ss_dssp HHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHHHHHHTEETTTTEEECTT----------GGGCHHHHHT
T ss_pred HHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHHHHHhccchhccccCHHH----------cCCCcchhhc
Confidence 578999999865556655544431 12222221 11111 1223333332 222233333
Q ss_pred -EEccCCcCcccCch---HHhhCCCCCcEEEeecccCCC--CChhhhhcCCcCceeeccCccCCCCCcccccCCC--Ccc
Q 023644 126 -VSLHKNQLSGQIPA---NICSYLPFLEVLSLSQNMLHG--GIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLT--KLK 197 (279)
Q Consensus 126 -L~l~~n~l~~~lp~---~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~--~L~ 197 (279)
++++.|... .++. .+...+++|++|++++|.+++ .+|..+..+++|++|+|++|.+++. ..+..+. +|+
T Consensus 147 ~l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~ 223 (267)
T 3rw6_A 147 NIDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLE 223 (267)
T ss_dssp TCCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCS
T ss_pred CccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcc
Confidence 566677543 3332 222568999999999999997 4567778999999999999999864 3344444 899
Q ss_pred eeecccccccccccc-------cccCCCCCCEEe
Q 023644 198 LLYIGVNRLQGEIPR-------EFGNLAELERMS 224 (279)
Q Consensus 198 ~L~l~~n~l~~~~p~-------~l~~l~~L~~L~ 224 (279)
+|++++|.+.+.+|. .+..+++|+.||
T Consensus 224 ~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 224 ELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp EEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred eEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 999999999876662 367789999887
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.31 E-value=3.1e-07 Score=70.99 Aligned_cols=85 Identities=7% Similarity=0.010 Sum_probs=54.4
Q ss_pred CCCCcEEEeecccCCCCChhhhhcCCcCceeeccCcc-CCCCCcccccCC----CCcceeeccccc-ccccccccccCCC
Q 023644 145 LPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNN-FLGAIPKEIGNL----TKLKLLYIGVNR-LQGEIPREFGNLA 218 (279)
Q Consensus 145 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~l~~l----~~L~~L~l~~n~-l~~~~p~~l~~l~ 218 (279)
-..|++|+++++.++..--..+..+++|++|++++|. +++..-..++.+ ++|++|++++|. +++..-..+.+++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3467888888877765544556677777777777774 554333344443 357777777763 6655445566677
Q ss_pred CCCEEeccCCc
Q 023644 219 ELERMSLATNK 229 (279)
Q Consensus 219 ~L~~L~l~~n~ 229 (279)
+|++|+++++.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 77777777764
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.18 E-value=6.7e-07 Score=69.11 Aligned_cols=84 Identities=12% Similarity=0.149 Sum_probs=46.9
Q ss_pred CCCCEEEccCCcCcccCchHHhhCCCCCcEEEeeccc-CCCCChhhhhcC----CcCceeeccCcc-CCCCCcccccCCC
Q 023644 121 YTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNM-LHGGIPSTLSNC----TYLRILSLPYNN-FLGAIPKEIGNLT 194 (279)
Q Consensus 121 ~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l----~~L~~L~l~~n~-l~~~~p~~l~~l~ 194 (279)
..|++||++++.++..--..+ ..+++|++|++++|. ++..--..+..+ ++|++|++++|. +++..-..+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 356667777666653222233 566667777776663 553333334443 356677776653 5544334455566
Q ss_pred Ccceeeccccc
Q 023644 195 KLKLLYIGVNR 205 (279)
Q Consensus 195 ~L~~L~l~~n~ 205 (279)
+|++|+++++.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 67777766653
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.07 E-value=3.1e-05 Score=67.71 Aligned_cols=150 Identities=13% Similarity=0.093 Sum_probs=112.0
Q ss_pred CCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCc
Q 023644 94 GNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLR 173 (279)
Q Consensus 94 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 173 (279)
.....|+.+.+... ++..-...+.....++.+.+..+.. .++...|.....++.+....+.+. ...+..+.+|+
T Consensus 227 ~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~ 300 (394)
T 4fs7_A 227 LSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLT 300 (394)
T ss_dssp TTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCC
T ss_pred cccCCCceEEECCC-ceecccccccccccceeEEcCCCcc--eeeccccccccccceeccCceeec---ccccccccccc
Confidence 34567888887654 3323445677888999999987755 466666788888998887766433 34577888999
Q ss_pred eeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 174 ILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 174 ~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
.+.+..+ ++......|.++.+|+.+++.++ ++..-..+|.++.+|+.+++..+ ++......|.++++|+.+++..+
T Consensus 301 ~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 301 EVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp EEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 9998765 55444567888899999999754 55455678999999999999876 66666778899999999999765
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.94 E-value=6.8e-05 Score=65.56 Aligned_cols=152 Identities=13% Similarity=0.057 Sum_probs=106.7
Q ss_pred ccCCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCC
Q 023644 91 AQLGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCT 170 (279)
Q Consensus 91 ~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 170 (279)
..+.++..|+.+.+..+... +.........|+.+.+..+. + .+....|.....++.+.+..+... .....+..+.
T Consensus 202 ~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~ 276 (394)
T 4fs7_A 202 YCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCS 276 (394)
T ss_dssp TTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCT
T ss_pred hhhccccccceeecCCCceE--eehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcce-eecccccccc
Confidence 34666777888777665432 33344455788888886543 3 566666678889999988877543 4455677888
Q ss_pred cCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcc
Q 023644 171 YLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYS 250 (279)
Q Consensus 171 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 250 (279)
.++.+....+.+. ...+..+.+|+.+.+.++ ++.....+|.++.+|+.+++..+ ++......|.++++|+.+.+.
T Consensus 277 ~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 277 GLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp TCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCC
T ss_pred ccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEEC
Confidence 8888877665422 245667888999888765 55344567889999999999654 665666788889999999886
Q ss_pred cC
Q 023644 251 FV 252 (279)
Q Consensus 251 ~n 252 (279)
.+
T Consensus 352 ~~ 353 (394)
T 4fs7_A 352 LS 353 (394)
T ss_dssp TT
T ss_pred cc
Confidence 65
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.93 E-value=9e-05 Score=64.31 Aligned_cols=128 Identities=16% Similarity=0.182 Sum_probs=54.0
Q ss_pred ccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCc
Q 023644 117 IFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKL 196 (279)
Q Consensus 117 l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 196 (279)
+.....|+.+.+..+ +. .++...|.....|+.+.+..+ ++..-...+..+.+|+.+.+..+ +.......|..+.+|
T Consensus 213 f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred cccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 333444444444333 22 333333344445555544433 22222333444444555544332 222222334444555
Q ss_pred ceeecccccccccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEc
Q 023644 197 KLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLY 249 (279)
Q Consensus 197 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 249 (279)
+.+.+.++.++..-..+|.++.+|+.+.+..+ ++......|.++++|+.+.+
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 55555444444333344455555555555332 33333334444555555444
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.90 E-value=4.5e-05 Score=66.68 Aligned_cols=147 Identities=15% Similarity=0.152 Sum_probs=96.9
Q ss_pred CCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcCceee
Q 023644 97 SSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYLRILS 176 (279)
Q Consensus 97 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 176 (279)
..+..+.+... ++..-..+|.++..|+.+.+..+.. .+....|.+...|+.+.+.. .++..-...|.++.+|+.+.
T Consensus 242 ~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~ 317 (394)
T 4gt6_A 242 REDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSID 317 (394)
T ss_dssp CCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEE
T ss_pred cccceEEcCCc-ceEcccceeeecccccEEecccccc--eecCcccccccccccccCCC-cccccCceeecCCCCcCEEE
Confidence 34455555432 3323355677888888888876654 56677778888899988864 34434455688888999999
Q ss_pred ccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcccccchhhhhCCCCCCEEEcccC
Q 023644 177 LPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 177 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 252 (279)
+..+ ++......|.++.+|+.+.+..+ ++..-..+|.++++|+.+++.++.... ..+....+|+.+.+..|
T Consensus 318 lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 318 IPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred eCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence 8765 55444567888889999998654 554556778999999999998876432 34567788888887655
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.83 E-value=0.00017 Score=62.53 Aligned_cols=144 Identities=14% Similarity=0.153 Sum_probs=93.7
Q ss_pred CCCCCCCCEEECCCCcCCCcccccccCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccCCCCChhhhhcCCcC
Q 023644 93 LGNLSSLQSLNLSCNRLSGSIPSAIFTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNMLHGGIPSTLSNCTYL 172 (279)
Q Consensus 93 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 172 (279)
+....+++.+.+..+ ++.....++.....|+.+.+..+ ++ .+....|....+|+.+.+..+ ++......|..+.+|
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceecccccccccccc
Confidence 344455666666543 33233456667778888888765 54 667777777888888887654 442334567778888
Q ss_pred ceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcccccchhhhhCCC
Q 023644 173 RILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMIINFLQFDS 242 (279)
Q Consensus 173 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 242 (279)
+.+.+.++.++......|.++.+|+.+.+..+ ++..-..+|.++++|+.+.+..+ ++......|.+++
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 88888777766455567778888888888654 44344567888888888887544 4444444555543
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.83 E-value=0.00012 Score=63.86 Aligned_cols=156 Identities=11% Similarity=0.149 Sum_probs=109.5
Q ss_pred CccCCCCCCCCEEECCCCcCCCcccccc--------------cCCCCCCEEEccCCcCcccCchHHhhCCCCCcEEEeec
Q 023644 90 PAQLGNLSSLQSLNLSCNRLSGSIPSAI--------------FTIYTLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQ 155 (279)
Q Consensus 90 ~~~~~~l~~L~~L~l~~n~l~~~~p~~l--------------~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~ 155 (279)
...+.....+.......+.... ....+ .....+..+.+.. .++ .+....|.....|+.+.+..
T Consensus 198 ~~af~~c~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~-~i~~~aF~~c~~L~~i~lp~ 274 (394)
T 4gt6_A 198 TNAFSECFALSTITSDSESYPA-IDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVA-RIETHAFDSCAYLASVKMPD 274 (394)
T ss_dssp TTTTTTCTTCCEEEECCSSSCB-SSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEE-EECTTTTTTCSSCCEEECCT
T ss_pred cchhhhccccceeccccccccc-ccceeecccccccccccccccccccceEEcCC-cce-EcccceeeecccccEEeccc
Confidence 4567788888888776655431 11111 1223344444432 233 45566678889999999877
Q ss_pred ccCCCCChhhhhcCCcCceeeccCccCCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCcccccch
Q 023644 156 NMLHGGIPSTLSNCTYLRILSLPYNNFLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQGMII 235 (279)
Q Consensus 156 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~ 235 (279)
+..+ .....+.++.+|+.+.+.. .++......|.++.+|+.+++..+ ++.....+|.++.+|+.+.+..+ ++....
T Consensus 275 ~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~ 350 (394)
T 4gt6_A 275 SVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPE 350 (394)
T ss_dssp TCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCG
T ss_pred ccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhH
Confidence 6443 4456688899999999964 355444567888999999999765 55455678999999999999655 666667
Q ss_pred hhhhCCCCCCEEEcccC
Q 023644 236 NFLQFDSSLCLLLYSFV 252 (279)
Q Consensus 236 ~~l~~l~~L~~L~l~~n 252 (279)
..|.++++|+.+++..+
T Consensus 351 ~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 351 SAFSNCTALNNIEYSGS 367 (394)
T ss_dssp GGGTTCTTCCEEEESSC
T ss_pred hHhhCCCCCCEEEECCc
Confidence 78999999999999876
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.72 E-value=3.2e-05 Score=60.73 Aligned_cols=88 Identities=17% Similarity=0.123 Sum_probs=45.9
Q ss_pred hhcCCcCceeeccCccCCCCC----cccccCCCCcceeeccccccccc----ccccccCCCCCCEEeccCC---cccc--
Q 023644 166 LSNCTYLRILSLPYNNFLGAI----PKEIGNLTKLKLLYIGVNRLQGE----IPREFGNLAELERMSLATN---KLQG-- 232 (279)
Q Consensus 166 ~~~l~~L~~L~l~~n~l~~~~----p~~l~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n---~l~~-- 232 (279)
+..-++|+.|+|++|.+.... ...+..-+.|++|+|++|.|.+. +-+.+..-+.|+.|+|++| .+..
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 334445555555555554321 12222334566666666666532 2233444455777777644 2332
Q ss_pred --cchhhhhCCCCCCEEEcccCc
Q 023644 233 --MIINFLQFDSSLCLLLYSFVC 253 (279)
Q Consensus 233 --~~~~~l~~l~~L~~L~l~~n~ 253 (279)
.+.+.+..-+.|+.|++++|+
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHhCCCcCeEeccCCC
Confidence 244556667778888887764
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.31 E-value=0.00014 Score=57.03 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=8.5
Q ss_pred ccCCCCCCEEEccCCcCc
Q 023644 117 IFTIYTLKNVSLHKNQLS 134 (279)
Q Consensus 117 l~~l~~L~~L~l~~n~l~ 134 (279)
+..-.+|+.|+|++|.+.
T Consensus 66 L~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp HTTCSCCCEEECTTSCCB
T ss_pred HhhCCCcCEEEccCCCCC
Confidence 333444555555555443
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.22 E-value=0.00062 Score=49.74 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=19.2
Q ss_pred CCCEEEccCCcCcccCchHHhhCCCCCcEEEeecccC
Q 023644 122 TLKNVSLHKNQLSGQIPANICSYLPFLEVLSLSQNML 158 (279)
Q Consensus 122 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l 158 (279)
+|++|+|++|+++ .+|...|..+++|++|++.+|.+
T Consensus 32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCe
Confidence 3455555555555 55555555555555555555544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.13 E-value=0.00074 Score=49.33 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=33.3
Q ss_pred eeeccCccCC-CCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCCccc
Q 023644 174 ILSLPYNNFL-GAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATNKLQ 231 (279)
Q Consensus 174 ~L~l~~n~l~-~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 231 (279)
+++.+++.++ ..+|..+. ++|++|+|++|.|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5566666554 24444322 35667777777776444455666677777777777654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=43.23 E-value=33 Score=22.98 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=5.0
Q ss_pred hhcCCcCceeec
Q 023644 166 LSNCTYLRILSL 177 (279)
Q Consensus 166 ~~~l~~L~~L~l 177 (279)
|.++++|+.+.+
T Consensus 16 F~~c~~L~~i~i 27 (100)
T 2lz0_A 16 FAGNTVIREITV 27 (100)
T ss_dssp TTTCTTCCCEEE
T ss_pred hcCCCCCcEEEc
Confidence 334444444444
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=38.98 E-value=47 Score=22.20 Aligned_cols=46 Identities=15% Similarity=0.116 Sum_probs=30.4
Q ss_pred CCCCCcccccCCCCcceeecccccccccccccccCCCCCCEEeccCC
Q 023644 182 FLGAIPKEIGNLTKLKLLYIGVNRLQGEIPREFGNLAELERMSLATN 228 (279)
Q Consensus 182 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 228 (279)
++..-...|.++.+|+.+.+..+- +..-..+|.++.+|+.+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence 343444567777888888876653 3244567888888888887654
No 167
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=22.06 E-value=21 Score=16.30 Aligned_cols=9 Identities=33% Similarity=1.125 Sum_probs=6.8
Q ss_pred CCCCccceE
Q 023644 59 CFCNWTGVT 67 (279)
Q Consensus 59 ~~c~w~gv~ 67 (279)
-.|+|+|+.
T Consensus 6 gacswrgle 14 (23)
T 3ox7_P 6 GACSWRGLE 14 (26)
T ss_pred cccccccch
Confidence 369999875
Done!