Query 023645
Match_columns 279
No_of_seqs 368 out of 3019
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 05:34:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023645.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023645hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02476 O-methyltransferase 100.0 2E-45 4.2E-50 320.4 27.5 272 1-279 1-278 (278)
2 PF01596 Methyltransf_3: O-met 100.0 1.5E-41 3.3E-46 285.5 23.1 200 80-279 5-205 (205)
3 KOG1663 O-methyltransferase [S 100.0 2.9E-39 6.4E-44 268.3 23.1 219 61-279 10-237 (237)
4 PLN02589 caffeoyl-CoA O-methyl 100.0 7.5E-39 1.6E-43 275.9 26.5 214 66-279 23-246 (247)
5 COG4122 Predicted O-methyltran 100.0 1E-37 2.2E-42 262.2 24.3 208 66-279 6-218 (219)
6 PLN02781 Probable caffeoyl-CoA 100.0 2.5E-37 5.5E-42 266.2 26.7 213 67-279 11-233 (234)
7 COG2230 Cfa Cyclopropane fatty 99.8 1.7E-18 3.7E-23 150.6 10.2 162 47-234 14-181 (283)
8 PF12847 Methyltransf_18: Meth 99.8 6.9E-18 1.5E-22 128.5 10.4 104 119-229 1-111 (112)
9 PF02353 CMAS: Mycolic acid cy 99.7 3.9E-18 8.4E-23 149.9 9.3 164 47-236 4-173 (273)
10 COG2242 CobL Precorrin-6B meth 99.7 4.2E-16 9.2E-21 127.1 16.2 150 102-274 17-166 (187)
11 PRK00377 cbiT cobalt-precorrin 99.7 1.4E-15 2.9E-20 128.1 17.2 112 114-230 35-146 (198)
12 PRK08287 cobalt-precorrin-6Y C 99.7 1.8E-15 3.8E-20 126.2 16.9 118 103-230 15-132 (187)
13 PRK04457 spermidine synthase; 99.7 3E-15 6.5E-20 131.2 18.5 112 111-228 58-176 (262)
14 TIGR02469 CbiT precorrin-6Y C5 99.7 1E-15 2.2E-20 118.3 13.7 109 114-229 14-122 (124)
15 PRK13942 protein-L-isoaspartat 99.7 1.2E-15 2.5E-20 129.8 13.5 118 101-228 58-175 (212)
16 TIGR00138 gidB 16S rRNA methyl 99.7 2E-15 4.4E-20 125.1 14.4 102 117-228 40-141 (181)
17 COG2226 UbiE Methylase involve 99.7 7.6E-16 1.7E-20 131.7 12.0 113 113-233 45-160 (238)
18 TIGR00080 pimt protein-L-isoas 99.7 1.4E-15 3E-20 129.6 13.4 116 103-228 61-176 (215)
19 PRK13944 protein-L-isoaspartat 99.7 1.4E-15 2.9E-20 128.8 13.2 116 105-229 58-173 (205)
20 COG2519 GCD14 tRNA(1-methylade 99.7 1.1E-15 2.4E-20 129.9 12.4 138 68-231 60-197 (256)
21 PF01209 Ubie_methyltran: ubiE 99.7 8.5E-16 1.8E-20 132.2 11.2 115 113-234 41-158 (233)
22 PRK00107 gidB 16S rRNA methylt 99.6 2.8E-15 6.1E-20 124.7 13.0 100 119-228 45-144 (187)
23 PLN03075 nicotianamine synthas 99.6 3.3E-15 7.2E-20 131.5 12.4 119 104-229 109-233 (296)
24 PF13847 Methyltransf_31: Meth 99.6 2.9E-15 6.4E-20 120.6 11.2 109 119-233 3-114 (152)
25 PF05175 MTS: Methyltransferas 99.6 4.9E-15 1.1E-19 121.7 11.9 109 110-227 22-138 (170)
26 PRK07402 precorrin-6B methylas 99.6 2.5E-14 5.5E-19 120.1 16.1 123 100-230 21-143 (196)
27 PF08704 GCD14: tRNA methyltra 99.6 1E-14 2.3E-19 125.7 13.9 132 92-228 13-145 (247)
28 PRK00121 trmB tRNA (guanine-N( 99.6 1.1E-14 2.4E-19 122.9 12.4 122 100-228 23-155 (202)
29 COG2518 Pcm Protein-L-isoaspar 99.6 8.8E-15 1.9E-19 121.8 11.3 118 98-228 51-168 (209)
30 PRK14901 16S rRNA methyltransf 99.6 3.2E-14 7E-19 133.3 16.6 158 107-278 240-430 (434)
31 PRK11036 putative S-adenosyl-L 99.6 1.5E-14 3.3E-19 126.4 13.2 102 119-228 44-148 (255)
32 TIGR02752 MenG_heptapren 2-hep 99.6 2.5E-14 5.4E-19 123.0 13.7 113 111-230 37-152 (231)
33 PLN02233 ubiquinone biosynthes 99.6 2.7E-14 5.8E-19 125.2 13.3 114 114-233 68-186 (261)
34 TIGR03533 L3_gln_methyl protei 99.6 8.9E-14 1.9E-18 123.3 16.4 118 103-228 101-250 (284)
35 PF01135 PCMT: Protein-L-isoas 99.6 1.3E-14 2.8E-19 122.7 10.2 117 101-227 54-170 (209)
36 PRK14903 16S rRNA methyltransf 99.6 1.1E-13 2.4E-18 129.3 17.0 126 103-234 221-371 (431)
37 PRK14902 16S rRNA methyltransf 99.6 7.8E-14 1.7E-18 131.2 16.0 124 103-232 234-382 (444)
38 PF13659 Methyltransf_26: Meth 99.6 3.2E-14 6.9E-19 109.1 10.4 101 121-227 2-113 (117)
39 COG4123 Predicted O-methyltran 99.6 4E-14 8.6E-19 121.3 11.7 116 107-227 32-168 (248)
40 PRK00312 pcm protein-L-isoaspa 99.6 1.2E-13 2.5E-18 117.4 14.5 114 102-228 61-174 (212)
41 PLN02244 tocopherol O-methyltr 99.5 5.8E-14 1.3E-18 127.6 12.9 107 118-232 117-226 (340)
42 PRK11805 N5-glutamine S-adenos 99.5 9.3E-14 2E-18 124.3 13.9 118 103-228 113-262 (307)
43 COG2227 UbiG 2-polyprenyl-3-me 99.5 3.8E-14 8.3E-19 119.7 10.2 122 103-235 40-167 (243)
44 smart00828 PKS_MT Methyltransf 99.5 1.1E-13 2.3E-18 118.5 12.7 103 121-231 1-106 (224)
45 PRK11705 cyclopropane fatty ac 99.5 3.4E-14 7.3E-19 130.9 10.3 161 43-233 106-271 (383)
46 PRK14904 16S rRNA methyltransf 99.5 2.5E-13 5.4E-18 127.8 16.3 123 103-233 234-381 (445)
47 TIGR00446 nop2p NOL1/NOP2/sun 99.5 3.1E-13 6.8E-18 118.6 15.9 121 107-234 59-204 (264)
48 PRK11873 arsM arsenite S-adeno 99.5 1.4E-13 3E-18 121.3 13.7 114 115-235 73-189 (272)
49 PRK11207 tellurite resistance 99.5 8.2E-14 1.8E-18 117.1 11.5 100 117-227 28-132 (197)
50 PRK10901 16S rRNA methyltransf 99.5 3.7E-13 8E-18 125.9 16.7 122 105-233 230-376 (427)
51 PLN02396 hexaprenyldihydroxybe 99.5 8.1E-14 1.8E-18 125.1 11.7 104 119-231 131-237 (322)
52 TIGR00091 tRNA (guanine-N(7)-) 99.5 1.9E-13 4.1E-18 114.7 13.2 105 119-228 16-131 (194)
53 TIGR00563 rsmB ribosomal RNA s 99.5 3.4E-13 7.4E-18 126.2 15.9 124 106-234 225-373 (426)
54 PRK15451 tRNA cmo(5)U34 methyl 99.5 1.7E-13 3.6E-18 119.3 12.9 106 118-231 55-166 (247)
55 PRK00811 spermidine synthase; 99.5 7E-13 1.5E-17 117.5 16.7 105 118-228 75-190 (283)
56 PRK15001 SAM-dependent 23S rib 99.5 1.9E-13 4E-18 125.0 13.2 102 119-228 228-339 (378)
57 TIGR00740 methyltransferase, p 99.5 3.6E-13 7.8E-18 116.5 14.3 106 119-232 53-164 (239)
58 PF13578 Methyltransf_24: Meth 99.5 2.3E-14 4.9E-19 108.4 5.9 102 124-230 1-106 (106)
59 PRK00517 prmA ribosomal protei 99.5 1.2E-12 2.7E-17 114.0 17.1 109 107-231 106-215 (250)
60 TIGR00477 tehB tellurite resis 99.5 2.1E-13 4.5E-18 114.5 11.7 100 116-227 27-131 (195)
61 TIGR00536 hemK_fam HemK family 99.5 3.8E-13 8.2E-18 119.4 13.8 120 103-230 94-245 (284)
62 PF13649 Methyltransf_25: Meth 99.5 1.3E-13 2.9E-18 103.2 9.2 93 123-223 1-101 (101)
63 PRK14103 trans-aconitate 2-met 99.5 1.7E-13 3.8E-18 119.6 10.9 96 117-228 27-125 (255)
64 TIGR00406 prmA ribosomal prote 99.5 9.7E-13 2.1E-17 117.0 15.7 104 118-231 158-261 (288)
65 TIGR00537 hemK_rel_arch HemK-r 99.5 1.1E-12 2.3E-17 108.6 15.0 109 109-230 9-141 (179)
66 PRK15128 23S rRNA m(5)C1962 me 99.5 1.1E-12 2.4E-17 121.1 16.4 111 116-230 217-340 (396)
67 PRK10909 rsmD 16S rRNA m(2)G96 99.5 1.5E-12 3.3E-17 109.3 15.9 114 108-229 42-159 (199)
68 PRK01581 speE spermidine synth 99.5 1.2E-12 2.6E-17 117.9 15.7 106 117-228 148-267 (374)
69 PRK01683 trans-aconitate 2-met 99.5 2.5E-13 5.4E-18 118.8 11.1 99 116-228 28-129 (258)
70 COG2264 PrmA Ribosomal protein 99.5 9.3E-13 2E-17 115.8 14.4 119 105-232 147-266 (300)
71 PF08241 Methyltransf_11: Meth 99.5 6.4E-14 1.4E-18 102.7 6.1 92 124-227 1-95 (95)
72 COG1092 Predicted SAM-dependen 99.5 1.3E-12 2.8E-17 119.4 15.4 118 113-235 211-342 (393)
73 PRK04266 fibrillarin; Provisio 99.5 2.2E-12 4.8E-17 110.5 15.9 109 115-233 68-179 (226)
74 PRK15068 tRNA mo(5)U34 methylt 99.5 6.9E-13 1.5E-17 119.6 12.8 111 116-235 119-232 (322)
75 COG4106 Tam Trans-aconitate me 99.5 1.1E-13 2.5E-18 114.4 6.6 102 114-229 25-129 (257)
76 PF06325 PrmA: Ribosomal prote 99.5 1.5E-12 3.3E-17 115.3 14.1 146 105-278 146-293 (295)
77 PTZ00098 phosphoethanolamine N 99.5 7.2E-13 1.6E-17 116.3 11.9 108 115-233 48-160 (263)
78 PRK13943 protein-L-isoaspartat 99.5 1.3E-12 2.7E-17 117.4 13.5 115 104-228 65-179 (322)
79 TIGR00417 speE spermidine synt 99.4 5E-12 1.1E-16 111.4 16.6 105 118-228 71-185 (270)
80 TIGR02716 C20_methyl_CrtF C-20 99.4 1.3E-12 2.8E-17 117.2 13.0 114 111-234 141-259 (306)
81 PRK08317 hypothetical protein; 99.4 3.3E-12 7.2E-17 109.6 14.9 115 113-235 13-130 (241)
82 PRK11783 rlmL 23S rRNA m(2)G24 99.4 1.7E-12 3.7E-17 128.2 14.8 111 114-231 533-658 (702)
83 TIGR03534 RF_mod_PrmC protein- 99.4 2.4E-12 5.2E-17 111.8 14.2 116 104-228 70-216 (251)
84 PRK14968 putative methyltransf 99.4 2.6E-12 5.5E-17 106.6 13.7 110 109-228 13-147 (188)
85 PRK01544 bifunctional N5-gluta 99.4 1.5E-12 3.2E-17 124.0 13.7 101 120-228 139-268 (506)
86 PLN02366 spermidine synthase 99.4 8.7E-12 1.9E-16 111.4 16.6 106 118-228 90-205 (308)
87 PRK12335 tellurite resistance 99.4 1.9E-12 4.2E-17 115.0 12.1 99 117-227 118-221 (287)
88 TIGR00095 RNA methyltransferas 99.4 1.1E-11 2.4E-16 103.4 15.8 116 110-229 40-159 (189)
89 TIGR00452 methyltransferase, p 99.4 2.4E-12 5.2E-17 115.2 12.4 110 117-235 119-231 (314)
90 PRK14121 tRNA (guanine-N(7)-)- 99.4 4.1E-12 8.9E-17 115.9 14.1 103 119-227 122-233 (390)
91 PRK09489 rsmC 16S ribosomal RN 99.4 3.3E-12 7E-17 115.9 13.1 98 119-227 196-301 (342)
92 PF03602 Cons_hypoth95: Conser 99.4 6.3E-12 1.4E-16 104.3 13.7 126 100-229 22-153 (183)
93 TIGR03587 Pse_Me-ase pseudamin 99.4 4.5E-12 9.8E-17 107.1 12.6 103 116-234 40-147 (204)
94 PRK00216 ubiE ubiquinone/menaq 99.4 5E-12 1.1E-16 108.7 13.1 109 117-231 49-160 (239)
95 PLN02336 phosphoethanolamine N 99.4 3.8E-12 8.3E-17 120.8 12.8 108 116-233 263-373 (475)
96 PRK06922 hypothetical protein; 99.4 5.6E-12 1.2E-16 120.8 13.8 114 112-232 411-540 (677)
97 TIGR03704 PrmC_rel_meth putati 99.4 7.9E-12 1.7E-16 108.9 13.6 100 120-228 87-215 (251)
98 PRK14967 putative methyltransf 99.4 9.6E-12 2.1E-16 106.5 13.8 99 118-227 35-157 (223)
99 TIGR01177 conserved hypothetic 99.4 4.9E-12 1.1E-16 114.6 12.6 117 102-228 165-293 (329)
100 PRK14966 unknown domain/N5-glu 99.4 7.2E-12 1.6E-16 115.0 13.6 118 102-227 233-379 (423)
101 PRK09328 N5-glutamine S-adenos 99.4 5.7E-12 1.2E-16 111.0 12.6 116 104-228 90-237 (275)
102 COG2890 HemK Methylase of poly 99.4 5.3E-12 1.1E-16 111.5 12.2 117 102-228 91-237 (280)
103 PF03848 TehB: Tellurite resis 99.4 6.2E-12 1.3E-16 104.4 11.8 104 115-230 26-134 (192)
104 PF07279 DUF1442: Protein of u 99.4 4.8E-11 1E-15 99.3 17.0 156 104-278 26-186 (218)
105 PF10672 Methyltrans_SAM: S-ad 99.4 8.7E-12 1.9E-16 109.8 13.2 109 117-230 121-239 (286)
106 COG2813 RsmC 16S RNA G1207 met 99.4 6.9E-12 1.5E-16 109.8 12.3 113 104-227 144-264 (300)
107 PRK03522 rumB 23S rRNA methylu 99.4 1.5E-11 3.3E-16 110.7 14.9 122 98-228 148-273 (315)
108 PF08242 Methyltransf_12: Meth 99.4 1.8E-13 3.8E-18 102.0 1.8 96 124-225 1-99 (99)
109 PRK10258 biotin biosynthesis p 99.4 3.3E-12 7.2E-17 111.2 9.8 101 116-231 39-142 (251)
110 KOG1540 Ubiquinone biosynthesi 99.3 1.8E-11 3.9E-16 103.8 13.2 105 117-227 98-212 (296)
111 KOG1270 Methyltransferases [Co 99.3 1.6E-12 3.5E-17 110.8 6.6 101 119-231 89-197 (282)
112 TIGR02072 BioC biotin biosynth 99.3 1.1E-11 2.3E-16 106.5 11.9 102 119-232 34-138 (240)
113 PRK05134 bifunctional 3-demeth 99.3 5.9E-11 1.3E-15 102.1 15.4 116 105-230 34-152 (233)
114 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 2.5E-11 5.4E-16 103.2 12.9 106 118-232 38-146 (223)
115 TIGR03840 TMPT_Se_Te thiopurin 99.3 1.7E-11 3.6E-16 104.2 10.7 102 119-231 34-154 (213)
116 PLN02490 MPBQ/MSBQ methyltrans 99.3 1.9E-11 4.2E-16 110.3 11.4 100 119-229 113-215 (340)
117 KOG2904 Predicted methyltransf 99.3 2.7E-11 5.9E-16 103.7 11.5 125 101-231 124-287 (328)
118 TIGR02085 meth_trns_rumB 23S r 99.3 6.7E-11 1.4E-15 108.9 15.1 122 97-228 207-333 (374)
119 COG0742 N6-adenine-specific me 99.3 1.2E-10 2.7E-15 95.6 14.9 127 98-229 21-154 (187)
120 TIGR03438 probable methyltrans 99.3 5E-11 1.1E-15 106.6 13.7 110 119-229 63-177 (301)
121 PF13489 Methyltransf_23: Meth 99.3 3.3E-11 7.2E-16 97.0 11.5 106 107-232 9-118 (161)
122 PRK11188 rrmJ 23S rRNA methylt 99.3 3.1E-11 6.7E-16 102.4 11.5 99 118-228 50-164 (209)
123 PF05401 NodS: Nodulation prot 99.3 1.6E-11 3.6E-16 101.1 9.4 141 121-277 45-193 (201)
124 PRK13168 rumA 23S rRNA m(5)U19 99.3 7.6E-11 1.7E-15 110.9 15.1 123 99-228 273-399 (443)
125 PTZ00146 fibrillarin; Provisio 99.3 8.4E-11 1.8E-15 103.4 14.1 104 117-228 130-236 (293)
126 PLN02823 spermine synthase 99.3 3.6E-11 7.7E-16 108.6 12.1 105 118-228 102-219 (336)
127 PRK11088 rrmA 23S rRNA methylt 99.3 3.5E-11 7.7E-16 106.1 11.7 94 119-228 85-180 (272)
128 smart00138 MeTrc Methyltransfe 99.3 5.1E-11 1.1E-15 104.6 12.5 105 119-229 99-242 (264)
129 KOG1271 Methyltransferases [Ge 99.3 5.7E-11 1.2E-15 96.0 11.2 108 120-234 68-186 (227)
130 TIGR02021 BchM-ChlM magnesium 99.3 9.4E-11 2E-15 100.1 12.9 100 117-228 53-157 (219)
131 PLN02336 phosphoethanolamine N 99.3 4E-11 8.7E-16 113.8 11.6 110 113-233 31-146 (475)
132 PRK13255 thiopurine S-methyltr 99.3 1E-10 2.2E-15 99.7 12.7 114 102-227 21-153 (218)
133 TIGR00479 rumA 23S rRNA (uraci 99.2 1.8E-10 3.9E-15 108.1 15.4 121 100-227 269-394 (431)
134 PRK03612 spermidine synthase; 99.2 3.8E-11 8.2E-16 114.9 10.9 106 118-229 296-415 (521)
135 TIGR01983 UbiG ubiquinone bios 99.2 1.7E-10 3.6E-15 98.6 13.4 103 119-230 45-150 (224)
136 PF02390 Methyltransf_4: Putat 99.2 1.1E-10 2.5E-15 97.8 12.0 101 122-227 20-131 (195)
137 TIGR00438 rrmJ cell division p 99.2 1.2E-10 2.7E-15 97.0 12.0 103 114-228 27-145 (188)
138 PRK11933 yebU rRNA (cytosine-C 99.2 2.2E-10 4.8E-15 107.7 14.9 128 102-235 94-248 (470)
139 smart00650 rADc Ribosomal RNA 99.2 1.4E-10 3E-15 95.1 11.5 113 116-240 10-124 (169)
140 PRK07580 Mg-protoporphyrin IX 99.2 2.5E-10 5.4E-15 97.8 13.4 98 118-227 62-164 (230)
141 PF08003 Methyltransf_9: Prote 99.2 1.5E-10 3.3E-15 101.4 11.6 117 111-236 107-226 (315)
142 COG0220 Predicted S-adenosylme 99.2 2.1E-10 4.6E-15 97.9 12.3 102 121-227 50-162 (227)
143 KOG4300 Predicted methyltransf 99.2 1E-10 2.2E-15 96.4 9.8 101 120-228 77-181 (252)
144 cd02440 AdoMet_MTases S-adenos 99.2 2.7E-10 5.9E-15 83.5 11.2 99 122-228 1-103 (107)
145 PRK06202 hypothetical protein; 99.2 1.6E-10 3.5E-15 99.5 11.3 113 109-233 50-170 (232)
146 PRK05031 tRNA (uracil-5-)-meth 99.2 7.2E-10 1.6E-14 101.6 15.5 125 97-228 181-319 (362)
147 PHA03412 putative methyltransf 99.2 4.9E-10 1.1E-14 95.5 13.0 123 100-237 32-174 (241)
148 PLN02672 methionine S-methyltr 99.2 5.4E-10 1.2E-14 113.3 14.5 103 120-228 119-277 (1082)
149 COG0421 SpeE Spermidine syntha 99.1 1.9E-09 4.1E-14 94.9 15.9 104 119-228 76-189 (282)
150 PF04989 CmcI: Cephalosporin h 99.1 3E-10 6.6E-15 94.8 10.2 159 103-264 16-185 (206)
151 PRK05785 hypothetical protein; 99.1 3.3E-10 7.2E-15 97.2 10.5 88 119-223 51-141 (226)
152 KOG2915 tRNA(1-methyladenosine 99.1 3.8E-10 8.2E-15 96.6 10.5 123 96-224 82-204 (314)
153 PRK04338 N(2),N(2)-dimethylgua 99.1 1.3E-09 2.9E-14 100.3 14.7 100 120-228 58-157 (382)
154 COG2263 Predicted RNA methylas 99.1 4.2E-09 9.1E-14 86.1 15.5 115 118-264 44-163 (198)
155 TIGR02143 trmA_only tRNA (urac 99.1 2.3E-09 5E-14 98.0 15.3 124 98-228 173-310 (353)
156 PF02475 Met_10: Met-10+ like- 99.1 8.9E-10 1.9E-14 92.4 11.0 100 118-226 100-199 (200)
157 PHA03411 putative methyltransf 99.1 1.5E-09 3.2E-14 94.6 11.2 97 117-227 62-181 (279)
158 PF01564 Spermine_synth: Sperm 99.1 1.1E-09 2.4E-14 95.1 10.5 106 118-229 75-191 (246)
159 COG0144 Sun tRNA and rRNA cyto 99.1 3.5E-09 7.5E-14 96.7 14.1 131 101-235 138-294 (355)
160 PF10294 Methyltransf_16: Puta 99.1 2.7E-09 5.9E-14 87.8 12.1 112 116-232 42-159 (173)
161 TIGR00308 TRM1 tRNA(guanine-26 99.1 3.4E-09 7.5E-14 97.1 13.8 101 121-228 46-146 (374)
162 PTZ00338 dimethyladenosine tra 99.0 6E-09 1.3E-13 92.7 14.4 99 102-211 19-117 (294)
163 PF01189 Nol1_Nop2_Fmu: NOL1/N 99.0 1E-08 2.2E-13 90.9 15.7 149 102-266 68-245 (283)
164 PRK11727 23S rRNA mA1618 methy 99.0 7.3E-09 1.6E-13 92.9 14.9 142 60-204 26-198 (321)
165 PF05724 TPMT: Thiopurine S-me 99.0 2.9E-09 6.4E-14 90.7 11.8 156 98-267 17-188 (218)
166 COG2265 TrmA SAM-dependent met 99.0 4.1E-09 9E-14 98.2 13.6 124 97-228 267-395 (432)
167 PF01170 UPF0020: Putative RNA 99.0 3.8E-09 8.3E-14 87.4 11.8 121 102-228 11-150 (179)
168 COG3963 Phospholipid N-methylt 99.0 5E-09 1.1E-13 83.7 11.2 123 98-227 27-154 (194)
169 PLN02585 magnesium protoporphy 99.0 6.7E-09 1.5E-13 93.2 13.4 96 119-227 144-248 (315)
170 PF09445 Methyltransf_15: RNA 99.0 1.2E-09 2.5E-14 88.4 7.2 78 121-204 1-78 (163)
171 COG2521 Predicted archaeal met 99.0 2.8E-09 6.1E-14 89.5 8.6 104 117-227 132-243 (287)
172 KOG2899 Predicted methyltransf 99.0 5.1E-09 1.1E-13 88.4 10.1 111 118-234 57-214 (288)
173 COG4976 Predicted methyltransf 99.0 1.7E-09 3.6E-14 90.6 7.1 144 120-279 126-286 (287)
174 PF00891 Methyltransf_2: O-met 98.9 5.2E-09 1.1E-13 90.6 10.0 107 111-235 92-205 (241)
175 PF05185 PRMT5: PRMT5 arginine 98.9 1.6E-08 3.5E-13 94.8 13.9 102 120-228 187-296 (448)
176 COG1041 Predicted DNA modifica 98.9 5.2E-09 1.1E-13 93.5 10.0 119 101-228 179-309 (347)
177 PRK13256 thiopurine S-methyltr 98.9 1.2E-08 2.5E-13 87.2 11.3 128 101-235 26-169 (226)
178 KOG1661 Protein-L-isoaspartate 98.9 6.3E-09 1.4E-13 86.1 9.2 102 117-227 80-191 (237)
179 KOG3191 Predicted N6-DNA-methy 98.9 4.1E-08 8.8E-13 79.6 13.1 105 120-233 44-172 (209)
180 KOG1499 Protein arginine N-met 98.9 5.1E-09 1.1E-13 93.1 8.7 103 117-228 58-166 (346)
181 KOG1541 Predicted protein carb 98.9 3.1E-09 6.8E-14 88.5 6.8 95 120-228 51-159 (270)
182 COG2520 Predicted methyltransf 98.9 1.4E-08 3E-13 91.3 11.4 110 117-235 186-295 (341)
183 PRK00274 ksgA 16S ribosomal RN 98.9 3E-08 6.5E-13 87.5 13.4 104 101-217 24-127 (272)
184 PRK14896 ksgA 16S ribosomal RN 98.9 2.2E-08 4.8E-13 87.6 12.3 92 101-206 11-102 (258)
185 PF02527 GidB: rRNA small subu 98.9 2.8E-08 6E-13 82.4 11.2 96 122-227 51-146 (184)
186 PF06080 DUF938: Protein of un 98.9 1.9E-08 4.1E-13 83.9 9.7 114 122-236 28-149 (204)
187 TIGR00755 ksgA dimethyladenosi 98.8 5E-08 1.1E-12 85.2 12.4 103 101-217 11-116 (253)
188 KOG2361 Predicted methyltransf 98.8 5.1E-09 1.1E-13 88.4 5.6 108 121-232 73-186 (264)
189 TIGR02081 metW methionine bios 98.8 1.3E-08 2.9E-13 85.1 8.0 89 119-221 13-104 (194)
190 PF07021 MetW: Methionine bios 98.8 2.1E-08 4.6E-13 82.6 8.5 132 118-265 12-163 (193)
191 PF05891 Methyltransf_PK: AdoM 98.8 1.1E-08 2.3E-13 86.0 6.4 137 119-266 55-198 (218)
192 PRK00536 speE spermidine synth 98.8 2.1E-07 4.6E-12 81.2 13.9 99 117-229 70-171 (262)
193 PRK01544 bifunctional N5-gluta 98.8 8.8E-08 1.9E-12 91.5 12.3 102 120-227 348-460 (506)
194 PRK00050 16S rRNA m(4)C1402 me 98.8 5.7E-08 1.2E-12 86.1 10.1 82 118-204 18-99 (296)
195 KOG2730 Methylase [General fun 98.7 2.4E-08 5.3E-13 83.2 7.1 84 117-205 92-175 (263)
196 PF05958 tRNA_U5-meth_tr: tRNA 98.7 8.7E-08 1.9E-12 87.6 10.9 115 97-215 171-299 (352)
197 KOG3010 Methyltransferase [Gen 98.7 1.5E-08 3.2E-13 85.7 5.3 109 110-227 23-135 (261)
198 PF03291 Pox_MCEL: mRNA cappin 98.7 8.7E-08 1.9E-12 86.6 10.5 107 119-228 62-185 (331)
199 PF12147 Methyltransf_20: Puta 98.7 4.3E-07 9.4E-12 79.2 13.1 118 114-236 130-256 (311)
200 COG0357 GidB Predicted S-adeno 98.7 1.3E-07 2.9E-12 79.8 9.3 98 120-227 68-166 (215)
201 KOG1500 Protein arginine N-met 98.6 1.2E-07 2.7E-12 83.6 8.5 100 118-227 176-280 (517)
202 COG0030 KsgA Dimethyladenosine 98.6 8.2E-07 1.8E-11 77.0 13.2 103 102-216 13-116 (259)
203 PRK04148 hypothetical protein; 98.6 4.6E-07 1E-11 70.8 10.1 100 110-227 7-107 (134)
204 PF06962 rRNA_methylase: Putat 98.6 3.3E-07 7.1E-12 72.1 8.4 111 146-267 1-123 (140)
205 PF03059 NAS: Nicotianamine sy 98.6 3.4E-07 7.3E-12 80.2 9.3 103 120-228 121-229 (276)
206 KOG3420 Predicted RNA methylas 98.5 4.2E-07 9.2E-12 71.1 8.3 77 118-204 47-123 (185)
207 PF05711 TylF: Macrocin-O-meth 98.5 2.7E-07 5.7E-12 79.8 7.6 149 103-269 54-238 (248)
208 PLN02232 ubiquinone biosynthes 98.5 2.2E-07 4.7E-12 75.5 6.6 78 148-231 1-83 (160)
209 KOG0820 Ribosomal RNA adenine 98.5 8.4E-07 1.8E-11 76.4 9.6 79 115-204 54-132 (315)
210 KOG1975 mRNA cap methyltransfe 98.5 9.3E-07 2E-11 77.8 9.0 107 118-227 116-235 (389)
211 KOG2187 tRNA uracil-5-methyltr 98.4 1.1E-06 2.3E-11 81.9 9.7 126 97-227 357-488 (534)
212 PRK10742 putative methyltransf 98.4 1.8E-06 3.9E-11 74.3 10.2 88 109-204 76-173 (250)
213 PF02384 N6_Mtase: N-6 DNA Met 98.4 2.5E-06 5.5E-11 76.6 11.6 125 99-227 26-181 (311)
214 COG0293 FtsJ 23S rRNA methylas 98.4 4.4E-06 9.6E-11 69.8 12.0 101 118-230 44-160 (205)
215 COG4262 Predicted spermidine s 98.4 5.3E-06 1.1E-10 74.3 12.4 106 118-229 288-407 (508)
216 PF05219 DREV: DREV methyltran 98.4 3.7E-06 8E-11 72.4 10.9 149 98-266 68-237 (265)
217 PF04816 DUF633: Family of unk 98.4 2.7E-06 6E-11 71.7 10.0 98 123-227 1-99 (205)
218 PF01728 FtsJ: FtsJ-like methy 98.4 7.3E-07 1.6E-11 73.7 6.4 98 119-228 23-138 (181)
219 PRK10611 chemotaxis methyltran 98.4 1.7E-06 3.7E-11 76.6 8.9 105 119-228 115-261 (287)
220 PRK11783 rlmL 23S rRNA m(2)G24 98.4 3.8E-06 8.2E-11 83.5 12.0 99 102-204 172-312 (702)
221 TIGR02987 met_A_Alw26 type II 98.4 5.4E-06 1.2E-10 79.9 12.7 84 119-204 31-121 (524)
222 TIGR00478 tly hemolysin TlyA f 98.4 2.3E-06 5.1E-11 73.3 9.0 95 118-227 74-169 (228)
223 PF08123 DOT1: Histone methyla 98.4 4.1E-06 8.8E-11 70.7 10.3 113 115-233 38-162 (205)
224 COG1352 CheR Methylase of chem 98.4 8.3E-06 1.8E-10 71.4 12.5 104 119-228 96-240 (268)
225 PF01739 CheR: CheR methyltran 98.2 2.8E-06 6E-11 71.2 6.4 105 119-229 31-175 (196)
226 COG0116 Predicted N6-adenine-s 98.2 1.5E-05 3.2E-10 72.5 11.1 121 102-228 174-343 (381)
227 KOG1122 tRNA and rRNA cytosine 98.2 7.1E-06 1.5E-10 74.7 8.7 111 117-232 239-374 (460)
228 COG4076 Predicted RNA methylas 98.2 3.5E-06 7.6E-11 68.8 6.0 98 121-230 34-136 (252)
229 KOG1709 Guanidinoacetate methy 98.2 2.2E-05 4.7E-10 65.6 10.7 106 118-231 100-208 (271)
230 PF00398 RrnaAD: Ribosomal RNA 98.2 2.9E-05 6.3E-10 68.1 11.9 120 101-229 12-134 (262)
231 TIGR03439 methyl_EasF probable 98.2 4E-05 8.7E-10 68.9 12.8 109 119-227 76-195 (319)
232 PF13679 Methyltransf_32: Meth 98.1 2E-05 4.3E-10 62.6 9.3 64 118-181 24-92 (141)
233 TIGR01444 fkbM_fam methyltrans 98.1 1.1E-05 2.4E-10 63.7 7.4 58 122-181 1-58 (143)
234 TIGR00006 S-adenosyl-methyltra 98.1 4.9E-05 1.1E-09 67.7 12.2 84 117-204 18-101 (305)
235 COG3510 CmcI Cephalosporin hyd 98.1 8.9E-05 1.9E-09 60.9 11.7 146 104-255 54-209 (237)
236 PF02005 TRM: N2,N2-dimethylgu 98.0 2.1E-05 4.7E-10 72.3 8.8 105 120-230 50-155 (377)
237 PF01269 Fibrillarin: Fibrilla 98.0 5.3E-05 1.2E-09 63.9 10.2 105 117-227 71-176 (229)
238 KOG3178 Hydroxyindole-O-methyl 98.0 9.2E-05 2E-09 66.4 11.7 98 120-234 178-280 (342)
239 KOG1562 Spermidine synthase [A 98.0 9E-05 2E-09 64.8 11.1 142 116-270 118-270 (337)
240 PF05148 Methyltransf_8: Hypot 98.0 2.4E-05 5.3E-10 65.4 7.0 120 107-265 60-181 (219)
241 COG2384 Predicted SAM-dependen 97.9 0.00017 3.7E-09 60.7 11.2 101 120-227 17-118 (226)
242 KOG3115 Methyltransferase-like 97.9 3.3E-05 7.2E-10 64.0 6.7 105 122-227 63-181 (249)
243 PF03141 Methyltransf_29: Puta 97.9 1.2E-05 2.7E-10 75.0 4.6 158 96-270 87-263 (506)
244 PF05971 Methyltransf_10: Prot 97.9 6.2E-05 1.3E-09 66.7 8.5 81 121-204 104-186 (299)
245 PF09243 Rsm22: Mitochondrial 97.8 7.1E-05 1.5E-09 66.1 8.3 97 118-221 32-133 (274)
246 COG0500 SmtA SAM-dependent met 97.8 0.00025 5.5E-09 54.8 10.1 105 123-234 52-160 (257)
247 COG3897 Predicted methyltransf 97.7 0.00014 3E-09 60.1 7.3 98 116-227 76-176 (218)
248 PF01861 DUF43: Protein of unk 97.7 0.00066 1.4E-08 58.1 11.7 98 118-223 43-142 (243)
249 KOG4589 Cell division protein 97.7 0.00058 1.3E-08 56.0 10.5 104 118-235 68-188 (232)
250 COG1189 Predicted rRNA methyla 97.7 0.00018 4E-09 61.2 7.8 98 118-227 78-176 (245)
251 PF04672 Methyltransf_19: S-ad 97.7 0.00065 1.4E-08 59.2 11.4 164 67-233 12-194 (267)
252 COG0275 Predicted S-adenosylme 97.6 0.00082 1.8E-08 59.2 11.5 85 117-204 21-105 (314)
253 PRK11760 putative 23S rRNA C24 97.6 0.00014 3.1E-09 65.4 6.5 100 118-235 210-310 (357)
254 COG1867 TRM1 N2,N2-dimethylgua 97.6 0.00079 1.7E-08 60.8 11.0 102 120-229 53-154 (380)
255 PF07942 N2227: N2227-like pro 97.6 0.00057 1.2E-08 59.9 9.7 105 120-231 57-204 (270)
256 PF01795 Methyltransf_5: MraW 97.6 0.00042 9.1E-09 61.8 8.7 86 117-205 18-103 (310)
257 KOG1269 SAM-dependent methyltr 97.5 0.00014 3E-09 66.6 5.6 107 117-231 108-217 (364)
258 COG0286 HsdM Type I restrictio 97.5 0.0028 6.1E-08 60.6 14.3 136 99-235 166-335 (489)
259 KOG3201 Uncharacterized conser 97.5 0.00058 1.3E-08 54.7 7.8 107 118-229 28-140 (201)
260 KOG3045 Predicted RNA methylas 97.5 0.00034 7.4E-09 60.2 6.9 96 108-231 169-266 (325)
261 PRK01747 mnmC bifunctional tRN 97.5 0.00086 1.9E-08 66.5 10.5 102 121-227 59-204 (662)
262 COG1889 NOP1 Fibrillarin-like 97.5 0.0013 2.8E-08 54.7 9.6 102 117-227 74-178 (231)
263 KOG2352 Predicted spermine/spe 97.4 0.00024 5.3E-09 66.2 5.8 117 120-238 296-425 (482)
264 PF07091 FmrO: Ribosomal RNA m 97.4 0.00067 1.4E-08 58.4 7.9 87 107-203 92-179 (251)
265 KOG2940 Predicted methyltransf 97.4 0.00012 2.6E-09 61.8 2.6 97 120-227 73-172 (325)
266 PF04445 SAM_MT: Putative SAM- 97.3 0.00025 5.4E-09 60.7 3.9 86 111-204 65-160 (234)
267 COG4798 Predicted methyltransf 97.2 0.00066 1.4E-08 56.0 5.5 113 114-234 43-172 (238)
268 PHA01634 hypothetical protein 97.1 0.0019 4.1E-08 49.7 6.3 75 118-204 27-101 (156)
269 KOG1253 tRNA methyltransferase 97.1 0.00054 1.2E-08 63.9 3.9 115 112-229 102-216 (525)
270 KOG2671 Putative RNA methylase 97.0 0.0017 3.6E-08 58.1 5.9 119 101-227 190-352 (421)
271 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.9 0.0012 2.6E-08 57.5 4.7 111 119-231 56-201 (256)
272 COG1064 AdhP Zn-dependent alco 96.9 0.0073 1.6E-07 54.6 9.5 99 115-231 162-261 (339)
273 KOG2198 tRNA cytosine-5-methyl 96.8 0.0068 1.5E-07 54.9 8.6 118 115-233 151-300 (375)
274 KOG1501 Arginine N-methyltrans 96.7 0.0032 7E-08 58.0 5.9 58 122-181 69-126 (636)
275 KOG1596 Fibrillarin and relate 96.7 0.0051 1.1E-07 52.5 6.6 105 117-227 154-259 (317)
276 KOG0024 Sorbitol dehydrogenase 96.7 0.015 3.2E-07 51.9 9.5 119 103-229 144-273 (354)
277 COG5459 Predicted rRNA methyla 96.6 0.002 4.3E-08 57.9 3.8 106 118-227 112-223 (484)
278 KOG1099 SAM-dependent methyltr 96.6 0.01 2.2E-07 50.4 7.5 97 120-228 42-162 (294)
279 COG1063 Tdh Threonine dehydrog 96.5 0.031 6.6E-07 51.2 10.7 103 119-232 168-272 (350)
280 KOG0822 Protein kinase inhibit 96.5 0.01 2.2E-07 56.0 7.5 118 104-228 346-477 (649)
281 KOG4058 Uncharacterized conser 96.4 0.027 5.9E-07 44.6 8.2 113 105-227 58-170 (199)
282 COG4301 Uncharacterized conser 96.3 0.099 2.2E-06 45.1 12.1 112 113-227 72-191 (321)
283 PF11968 DUF3321: Putative met 96.2 0.016 3.5E-07 48.9 6.6 80 121-224 53-139 (219)
284 KOG3987 Uncharacterized conser 96.1 0.00097 2.1E-08 55.6 -1.1 114 99-231 89-209 (288)
285 PF11599 AviRa: RRNA methyltra 96.1 0.11 2.3E-06 43.9 10.8 107 119-228 51-213 (246)
286 cd08283 FDH_like_1 Glutathione 95.8 0.084 1.8E-06 48.8 10.2 108 114-229 179-306 (386)
287 cd00315 Cyt_C5_DNA_methylase C 95.8 0.044 9.6E-07 48.4 7.9 95 122-231 2-113 (275)
288 PF00107 ADH_zinc_N: Zinc-bind 95.7 0.04 8.6E-07 42.3 6.5 92 129-232 1-92 (130)
289 PF03141 Methyltransf_29: Puta 95.7 0.033 7.1E-07 52.6 6.8 130 119-278 365-506 (506)
290 PRK13699 putative methylase; P 95.5 0.023 4.9E-07 48.8 4.9 51 173-227 2-70 (227)
291 KOG1227 Putative methyltransfe 95.4 0.01 2.2E-07 52.3 2.4 103 119-231 194-299 (351)
292 COG3129 Predicted SAM-dependen 95.4 0.076 1.6E-06 45.3 7.5 89 121-212 80-170 (292)
293 PF12692 Methyltransf_17: S-ad 95.4 0.18 4E-06 40.0 9.1 101 121-232 30-137 (160)
294 PRK09424 pntA NAD(P) transhydr 95.3 0.21 4.6E-06 47.9 11.3 106 118-231 163-287 (509)
295 KOG1331 Predicted methyltransf 95.3 0.018 3.9E-07 50.5 3.6 102 105-227 34-141 (293)
296 KOG2793 Putative N2,N2-dimethy 95.3 0.16 3.5E-06 44.0 9.4 101 119-228 86-198 (248)
297 PF05430 Methyltransf_30: S-ad 95.3 0.031 6.6E-07 43.3 4.5 83 172-278 32-123 (124)
298 PRK11524 putative methyltransf 95.1 0.042 9E-07 48.8 5.3 53 172-228 8-79 (284)
299 PRK09880 L-idonate 5-dehydroge 95.0 0.16 3.6E-06 45.9 9.3 99 118-230 168-267 (343)
300 PF02254 TrkA_N: TrkA-N domain 94.7 0.14 3.1E-06 38.4 6.9 88 128-227 4-94 (116)
301 PF01555 N6_N4_Mtase: DNA meth 94.7 0.1 2.3E-06 43.8 6.6 52 108-162 178-231 (231)
302 cd08254 hydroxyacyl_CoA_DH 6-h 94.6 0.38 8.2E-06 42.9 10.5 100 116-228 162-262 (338)
303 TIGR00027 mthyl_TIGR00027 meth 94.6 0.96 2.1E-05 39.6 12.7 109 120-231 82-199 (260)
304 COG0677 WecC UDP-N-acetyl-D-ma 94.5 0.42 9E-06 44.1 10.3 105 121-235 10-134 (436)
305 KOG2798 Putative trehalase [Ca 94.5 0.15 3.3E-06 45.4 7.2 118 107-230 131-297 (369)
306 PRK11524 putative methyltransf 94.5 0.13 2.9E-06 45.6 7.1 56 108-166 195-252 (284)
307 cd08237 ribitol-5-phosphate_DH 94.5 0.3 6.4E-06 44.3 9.6 94 118-229 162-256 (341)
308 PF00145 DNA_methylase: C-5 cy 94.4 0.28 6.1E-06 43.7 9.1 94 122-231 2-112 (335)
309 TIGR03201 dearomat_had 6-hydro 93.8 0.48 1.1E-05 43.0 9.6 107 116-231 163-274 (349)
310 PLN03154 putative allyl alcoho 93.7 0.98 2.1E-05 41.1 11.3 102 115-229 154-258 (348)
311 cd08281 liver_ADH_like1 Zinc-d 93.7 0.55 1.2E-05 43.0 9.7 102 116-230 188-291 (371)
312 KOG1098 Putative SAM-dependent 93.6 0.18 4E-06 48.7 6.3 99 118-232 43-160 (780)
313 PF03721 UDPG_MGDP_dh_N: UDP-g 93.5 2.5 5.3E-05 35.0 12.4 102 122-235 2-126 (185)
314 TIGR00561 pntA NAD(P) transhyd 93.5 0.39 8.4E-06 46.1 8.5 101 118-226 162-281 (511)
315 TIGR03451 mycoS_dep_FDH mycoth 93.5 0.86 1.9E-05 41.5 10.6 103 116-230 173-277 (358)
316 COG0686 Ald Alanine dehydrogen 93.4 0.81 1.8E-05 41.0 9.6 94 120-226 168-265 (371)
317 cd05188 MDR Medium chain reduc 93.4 1 2.2E-05 38.4 10.4 98 118-228 133-231 (271)
318 PRK13699 putative methylase; P 93.3 0.33 7.3E-06 41.6 7.2 56 109-167 151-208 (227)
319 KOG2651 rRNA adenine N-6-methy 93.3 0.39 8.5E-06 43.9 7.6 53 108-162 142-194 (476)
320 COG1565 Uncharacterized conser 93.2 0.47 1E-05 43.2 8.0 48 120-167 78-132 (370)
321 PF04378 RsmJ: Ribosomal RNA s 93.0 1.1 2.3E-05 38.9 9.8 130 108-258 47-181 (245)
322 cd08294 leukotriene_B4_DH_like 92.7 1.7 3.7E-05 38.6 11.1 100 114-227 138-239 (329)
323 PF05050 Methyltransf_21: Meth 92.6 0.35 7.5E-06 38.4 6.0 43 125-167 1-48 (167)
324 KOG2352 Predicted spermine/spe 92.4 0.62 1.3E-05 44.0 7.9 96 122-227 51-159 (482)
325 PF02636 Methyltransf_28: Puta 92.3 0.33 7.2E-06 42.2 5.8 47 120-166 19-72 (252)
326 COG1568 Predicted methyltransf 92.3 0.61 1.3E-05 41.0 7.2 102 118-227 151-258 (354)
327 KOG2912 Predicted DNA methylas 92.2 0.24 5.1E-06 44.3 4.7 79 124-204 107-187 (419)
328 PF06859 Bin3: Bicoid-interact 92.2 0.12 2.7E-06 38.8 2.6 40 195-234 1-49 (110)
329 PLN02740 Alcohol dehydrogenase 92.2 1.7 3.7E-05 40.0 10.8 102 115-229 194-300 (381)
330 TIGR02825 B4_12hDH leukotriene 92.0 2.9 6.3E-05 37.3 11.8 101 114-228 133-236 (325)
331 TIGR00518 alaDH alanine dehydr 92.0 0.89 1.9E-05 42.0 8.5 96 119-227 166-265 (370)
332 PRK10309 galactitol-1-phosphat 92.0 1.6 3.5E-05 39.3 10.2 103 116-230 157-261 (347)
333 KOG2360 Proliferation-associat 91.8 0.25 5.5E-06 45.1 4.5 97 103-204 197-293 (413)
334 cd08295 double_bond_reductase_ 91.8 2.7 5.9E-05 37.7 11.4 100 115-227 147-249 (338)
335 TIGR00675 dcm DNA-methyltransf 91.8 0.83 1.8E-05 41.2 7.9 92 123-231 1-110 (315)
336 cd08293 PTGR2 Prostaglandin re 91.7 2.3 5E-05 38.1 10.8 94 121-227 156-252 (345)
337 COG0270 Dcm Site-specific DNA 91.6 1 2.2E-05 40.9 8.4 99 120-231 3-118 (328)
338 COG0604 Qor NADPH:quinone redu 91.6 1.8 4E-05 39.1 10.0 103 115-230 138-242 (326)
339 PRK11064 wecC UDP-N-acetyl-D-m 91.5 5.6 0.00012 37.3 13.4 105 121-235 4-125 (415)
340 PTZ00357 methyltransferase; Pr 91.4 0.88 1.9E-05 44.9 8.0 103 122-224 703-830 (1072)
341 PLN02827 Alcohol dehydrogenase 91.4 2.1 4.6E-05 39.4 10.5 103 115-229 189-295 (378)
342 KOG2078 tRNA modification enzy 91.4 0.15 3.3E-06 47.1 2.7 65 118-185 248-313 (495)
343 cd08239 THR_DH_like L-threonin 91.3 2.2 4.8E-05 38.2 10.3 100 116-228 160-261 (339)
344 COG2961 ComJ Protein involved 91.3 8.8 0.00019 33.4 13.0 135 103-258 73-212 (279)
345 cd05278 FDH_like Formaldehyde 91.1 2.1 4.5E-05 38.4 9.9 102 116-228 164-266 (347)
346 cd08285 NADP_ADH NADP(H)-depen 91.1 3 6.4E-05 37.7 11.0 104 116-230 163-267 (351)
347 KOG3924 Putative protein methy 91.1 3.4 7.5E-05 38.1 11.0 112 116-233 189-312 (419)
348 cd08230 glucose_DH Glucose deh 90.9 1.4 2.9E-05 40.1 8.6 96 118-230 171-270 (355)
349 TIGR03366 HpnZ_proposed putati 90.9 3.2 7E-05 36.3 10.7 101 118-231 119-220 (280)
350 TIGR02818 adh_III_F_hyde S-(hy 90.7 3.7 8E-05 37.5 11.2 102 115-229 181-287 (368)
351 COG3315 O-Methyltransferase in 90.6 3 6.6E-05 37.3 10.2 108 120-230 93-210 (297)
352 PF03686 UPF0146: Uncharacteri 90.5 1.3 2.9E-05 34.2 6.8 94 113-227 7-100 (127)
353 COG1062 AdhC Zn-dependent alco 90.5 2.9 6.3E-05 38.0 9.9 108 115-234 181-290 (366)
354 TIGR02822 adh_fam_2 zinc-bindi 90.5 3.3 7.2E-05 37.2 10.7 94 115-230 161-255 (329)
355 PF10237 N6-adenineMlase: Prob 90.4 6.7 0.00015 31.8 11.2 108 103-227 7-121 (162)
356 PRK15182 Vi polysaccharide bio 89.8 11 0.00023 35.6 13.7 104 119-235 5-126 (425)
357 cd08300 alcohol_DH_class_III c 89.8 4.7 0.0001 36.8 11.2 103 115-230 182-289 (368)
358 PRK07502 cyclohexadienyl dehyd 89.8 2.2 4.9E-05 38.1 8.8 88 121-226 7-97 (307)
359 PLN02353 probable UDP-glucose 89.7 9.6 0.00021 36.4 13.4 105 121-235 2-133 (473)
360 TIGR01202 bchC 2-desacetyl-2-h 89.6 1.4 3E-05 39.3 7.3 87 119-229 144-231 (308)
361 cd08261 Zn_ADH7 Alcohol dehydr 89.6 5.1 0.00011 35.8 11.1 102 114-227 154-256 (337)
362 PF01210 NAD_Gly3P_dh_N: NAD-d 89.3 2 4.3E-05 34.4 7.4 95 122-227 1-101 (157)
363 PRK15057 UDP-glucose 6-dehydro 89.2 3.2 6.9E-05 38.6 9.6 103 122-235 2-123 (388)
364 cd00401 AdoHcyase S-adenosyl-L 89.2 3.7 8E-05 38.5 10.0 88 118-229 200-289 (413)
365 cd08238 sorbose_phosphate_red 89.1 3.8 8.3E-05 38.1 10.2 103 117-227 173-286 (410)
366 PF10354 DUF2431: Domain of un 88.9 2.5 5.4E-05 34.4 7.7 100 126-228 3-124 (166)
367 PRK08114 cystathionine beta-ly 88.6 8.3 0.00018 36.0 11.9 129 104-238 61-195 (395)
368 COG1255 Uncharacterized protei 88.4 5.3 0.00012 30.4 8.4 89 113-221 7-96 (129)
369 TIGR02819 fdhA_non_GSH formald 88.4 9.5 0.00021 35.4 12.2 106 116-230 182-300 (393)
370 cd08301 alcohol_DH_plants Plan 88.2 6.2 0.00014 35.9 10.8 104 115-230 183-290 (369)
371 PRK05786 fabG 3-ketoacyl-(acyl 88.2 9.2 0.0002 32.1 11.2 106 119-228 4-134 (238)
372 PF03807 F420_oxidored: NADP o 88.1 1.3 2.9E-05 31.9 5.1 85 123-226 2-91 (96)
373 cd05285 sorbitol_DH Sorbitol d 88.0 5.9 0.00013 35.6 10.4 103 114-228 157-264 (343)
374 cd08231 MDR_TM0436_like Hypoth 87.9 7 0.00015 35.3 10.9 101 119-228 177-279 (361)
375 cd08233 butanediol_DH_like (2R 87.9 7.4 0.00016 35.1 11.0 103 115-229 168-272 (351)
376 cd08277 liver_alcohol_DH_like 87.7 7.5 0.00016 35.4 11.0 102 116-230 181-287 (365)
377 PRK15001 SAM-dependent 23S rib 87.7 3.6 7.7E-05 38.1 8.7 92 122-228 47-141 (378)
378 COG1748 LYS9 Saccharopine dehy 87.7 2.7 5.8E-05 39.0 7.9 83 121-215 2-88 (389)
379 PRK12475 thiamine/molybdopteri 87.6 6.8 0.00015 35.7 10.4 80 119-204 23-125 (338)
380 cd08232 idonate-5-DH L-idonate 87.6 3.9 8.5E-05 36.5 9.0 94 119-227 165-260 (339)
381 PF01053 Cys_Met_Meta_PP: Cys/ 87.6 11 0.00023 35.1 11.9 125 104-234 54-183 (386)
382 TIGR02356 adenyl_thiF thiazole 87.4 7.2 0.00016 32.7 9.8 80 119-204 20-120 (202)
383 PRK06940 short chain dehydroge 87.3 7.3 0.00016 33.9 10.3 80 121-204 3-85 (275)
384 KOG0022 Alcohol dehydrogenase, 87.3 6.5 0.00014 35.4 9.6 109 114-234 187-299 (375)
385 cd08286 FDH_like_ADH2 formalde 87.2 8.4 0.00018 34.5 10.9 101 116-227 163-264 (345)
386 PF07757 AdoMet_MTase: Predict 86.9 0.52 1.1E-05 35.4 2.2 33 119-154 58-90 (112)
387 cd08278 benzyl_alcohol_DH Benz 86.8 7.3 0.00016 35.5 10.4 101 116-228 183-284 (365)
388 COG4017 Uncharacterized protei 86.4 6.9 0.00015 32.7 8.7 97 115-240 40-138 (254)
389 PRK05708 2-dehydropantoate 2-r 86.3 2.3 5E-05 38.0 6.6 97 121-227 3-102 (305)
390 cd00757 ThiF_MoeB_HesA_family 86.3 8.4 0.00018 32.8 9.8 80 119-204 20-120 (228)
391 cd05213 NAD_bind_Glutamyl_tRNA 86.3 13 0.00028 33.4 11.4 96 118-231 176-274 (311)
392 COG1004 Ugd Predicted UDP-gluc 86.1 25 0.00054 32.8 13.0 102 122-235 2-126 (414)
393 PF07015 VirC1: VirC1 protein; 85.9 1.7 3.6E-05 37.3 5.2 75 129-203 12-91 (231)
394 PF02558 ApbA: Ketopantoate re 85.9 1.6 3.5E-05 34.3 4.8 92 124-227 2-99 (151)
395 TIGR01324 cysta_beta_ly_B cyst 85.8 19 0.00042 33.2 12.6 127 105-237 50-180 (377)
396 PRK09422 ethanol-active dehydr 85.7 9.6 0.00021 33.9 10.5 101 114-227 157-259 (338)
397 PRK12921 2-dehydropantoate 2-r 85.7 3.9 8.5E-05 36.2 7.8 34 194-227 67-100 (305)
398 KOG0821 Predicted ribosomal RN 85.5 3 6.4E-05 35.6 6.3 62 117-182 48-109 (326)
399 PLN02586 probable cinnamyl alc 85.4 9.2 0.0002 34.9 10.3 96 118-229 182-278 (360)
400 KOG2539 Mitochondrial/chloropl 85.3 0.73 1.6E-05 43.3 2.9 111 118-235 199-318 (491)
401 PF05206 TRM13: Methyltransfer 85.2 2.5 5.3E-05 37.1 6.0 40 118-157 17-60 (259)
402 PRK08324 short chain dehydroge 85.1 8.7 0.00019 38.5 10.7 82 119-204 421-507 (681)
403 PRK07417 arogenate dehydrogena 85.0 5 0.00011 35.3 8.1 85 122-225 2-87 (279)
404 COG0287 TyrA Prephenate dehydr 85.0 5.1 0.00011 35.5 8.0 88 121-225 4-94 (279)
405 PF02153 PDH: Prephenate dehyd 84.7 2.8 6.1E-05 36.6 6.2 75 134-226 2-76 (258)
406 cd05279 Zn_ADH1 Liver alcohol 84.5 13 0.00028 33.8 10.9 102 115-228 179-284 (365)
407 TIGR00497 hsdM type I restrict 84.5 7.7 0.00017 37.3 9.6 104 97-204 193-302 (501)
408 cd08263 Zn_ADH10 Alcohol dehyd 84.5 10 0.00022 34.4 10.2 98 118-227 186-285 (367)
409 PRK06249 2-dehydropantoate 2-r 84.3 2.9 6.3E-05 37.5 6.3 35 193-227 70-104 (313)
410 PF11312 DUF3115: Protein of u 84.1 4.1 8.8E-05 36.6 6.9 110 120-229 87-242 (315)
411 PF12242 Eno-Rase_NADH_b: NAD( 84.1 2.9 6.4E-05 29.3 4.8 36 118-153 37-73 (78)
412 cd08255 2-desacetyl-2-hydroxye 84.1 9.8 0.00021 32.8 9.5 94 115-227 93-188 (277)
413 TIGR00692 tdh L-threonine 3-de 84.0 17 0.00036 32.6 11.2 100 117-228 159-260 (340)
414 PLN02256 arogenate dehydrogena 83.9 13 0.00028 33.3 10.2 85 119-223 35-121 (304)
415 PRK09028 cystathionine beta-ly 83.9 24 0.00052 32.9 12.3 117 113-235 69-189 (394)
416 cd08236 sugar_DH NAD(P)-depend 83.7 14 0.0003 33.0 10.5 102 114-228 154-257 (343)
417 PRK10669 putative cation:proto 83.7 4.8 0.0001 39.2 8.0 95 121-227 418-513 (558)
418 PLN02662 cinnamyl-alcohol dehy 83.6 6.3 0.00014 34.9 8.2 78 120-203 4-84 (322)
419 PRK08306 dipicolinate synthase 83.5 11 0.00025 33.5 9.7 95 119-235 151-246 (296)
420 cd08291 ETR_like_1 2-enoyl thi 83.5 14 0.00031 32.8 10.5 97 119-228 142-241 (324)
421 PF03269 DUF268: Caenorhabditi 83.4 2.5 5.4E-05 34.2 4.8 95 120-229 2-111 (177)
422 PF01262 AlaDh_PNT_C: Alanine 83.3 1.8 3.9E-05 35.1 4.2 44 117-162 17-61 (168)
423 cd08266 Zn_ADH_like1 Alcohol d 83.3 14 0.00031 32.4 10.4 100 116-228 163-264 (342)
424 COG4121 Uncharacterized conser 83.2 2.4 5.2E-05 36.9 5.0 102 120-227 59-206 (252)
425 PRK08293 3-hydroxybutyryl-CoA 83.2 12 0.00027 32.9 9.8 95 121-226 4-117 (287)
426 PRK06522 2-dehydropantoate 2-r 83.2 13 0.00029 32.6 10.1 93 122-227 2-98 (304)
427 PF06460 NSP13: Coronavirus NS 82.7 4.9 0.00011 35.1 6.6 90 119-228 61-168 (299)
428 PRK05225 ketol-acid reductoiso 82.6 7.7 0.00017 36.8 8.4 92 116-228 32-130 (487)
429 PRK07582 cystathionine gamma-l 82.5 18 0.00039 33.2 10.9 113 110-232 56-172 (366)
430 PRK03659 glutathione-regulated 82.3 5.4 0.00012 39.3 7.7 95 121-227 401-496 (601)
431 PRK08655 prephenate dehydrogen 82.3 7.4 0.00016 36.8 8.4 85 122-224 2-87 (437)
432 KOG1197 Predicted quinone oxid 82.2 17 0.00038 31.9 9.7 98 117-227 144-243 (336)
433 PRK14620 NAD(P)H-dependent gly 82.2 11 0.00023 33.9 9.1 95 122-227 2-104 (326)
434 PRK07688 thiamine/molybdopteri 82.2 18 0.00039 32.9 10.6 80 119-204 23-125 (339)
435 cd08296 CAD_like Cinnamyl alco 82.1 12 0.00026 33.4 9.5 97 116-227 160-257 (333)
436 PF11899 DUF3419: Protein of u 82.0 3.8 8.2E-05 38.0 6.1 50 109-161 25-74 (380)
437 cd08243 quinone_oxidoreductase 81.9 22 0.00048 31.0 11.0 97 116-228 139-237 (320)
438 cd05286 QOR2 Quinone oxidoredu 81.9 19 0.00041 31.1 10.6 100 115-227 132-233 (320)
439 PRK08507 prephenate dehydrogen 81.8 9.8 0.00021 33.3 8.6 85 122-228 2-89 (275)
440 PRK07533 enoyl-(acyl carrier p 81.8 24 0.00053 30.2 11.0 81 119-204 9-97 (258)
441 TIGR00853 pts-lac PTS system, 81.8 10 0.00022 27.7 7.2 66 121-214 4-69 (95)
442 PF03446 NAD_binding_2: NAD bi 81.7 9.1 0.0002 30.7 7.7 117 122-272 3-123 (163)
443 KOG2920 Predicted methyltransf 81.6 1.3 2.9E-05 38.9 2.9 38 118-157 115-152 (282)
444 cd00755 YgdL_like Family of ac 81.3 21 0.00046 30.6 10.2 81 119-204 10-111 (231)
445 cd08241 QOR1 Quinone oxidoredu 81.1 23 0.0005 30.7 10.8 100 115-227 135-236 (323)
446 KOG0053 Cystathionine beta-lya 81.1 48 0.001 31.0 13.6 118 113-236 85-206 (409)
447 cd08260 Zn_ADH6 Alcohol dehydr 81.0 21 0.00046 31.9 10.7 100 115-227 161-262 (345)
448 PRK09496 trkA potassium transp 80.7 14 0.00031 34.6 9.8 95 122-227 2-97 (453)
449 PLN02989 cinnamyl-alcohol dehy 80.7 9.9 0.00021 33.8 8.4 79 120-204 5-86 (325)
450 PLN02494 adenosylhomocysteinas 80.6 11 0.00024 35.9 8.8 88 118-228 252-340 (477)
451 PRK07063 short chain dehydroge 80.6 17 0.00037 31.0 9.6 85 119-204 6-95 (260)
452 PF03514 GRAS: GRAS domain fam 80.5 33 0.00071 31.7 11.8 48 118-165 109-166 (374)
453 PRK06914 short chain dehydroge 80.4 37 0.0008 29.3 16.3 81 120-203 3-89 (280)
454 PRK05939 hypothetical protein; 80.4 29 0.00063 32.3 11.6 125 104-235 46-174 (397)
455 PRK10083 putative oxidoreducta 80.2 17 0.00036 32.4 9.7 100 115-227 156-257 (339)
456 PRK09496 trkA potassium transp 80.2 13 0.00029 34.8 9.4 96 120-225 231-327 (453)
457 cd08279 Zn_ADH_class_III Class 80.0 16 0.00034 33.2 9.6 101 115-227 178-280 (363)
458 TIGR00936 ahcY adenosylhomocys 79.7 14 0.0003 34.6 9.1 87 118-228 193-281 (406)
459 PF02719 Polysacc_synt_2: Poly 79.7 8.2 0.00018 34.4 7.2 77 124-204 2-86 (293)
460 PF00899 ThiF: ThiF family; I 79.6 15 0.00033 28.3 8.1 88 121-214 3-111 (135)
461 PF02826 2-Hacid_dh_C: D-isome 79.5 7.6 0.00016 31.7 6.6 95 118-238 34-133 (178)
462 PRK03562 glutathione-regulated 79.5 7.2 0.00016 38.6 7.6 95 121-227 401-496 (621)
463 cd05288 PGDH Prostaglandin deh 79.4 22 0.00049 31.3 10.3 98 117-227 143-242 (329)
464 PRK07109 short chain dehydroge 79.3 33 0.00071 30.9 11.3 83 119-204 7-94 (334)
465 PTZ00354 alcohol dehydrogenase 79.1 28 0.00061 30.6 10.8 99 116-227 137-238 (334)
466 COG1086 Predicted nucleoside-d 79.0 15 0.00033 35.7 9.2 84 117-204 247-334 (588)
467 PF11899 DUF3419: Protein of u 79.0 5 0.00011 37.2 5.9 63 167-234 272-339 (380)
468 cd01488 Uba3_RUB Ubiquitin act 79.0 20 0.00042 32.0 9.5 76 122-204 1-97 (291)
469 cd08234 threonine_DH_like L-th 79.0 16 0.00034 32.5 9.1 100 114-227 154-255 (334)
470 cd05281 TDH Threonine dehydrog 78.9 38 0.00081 30.3 11.6 97 118-227 162-260 (341)
471 PF01408 GFO_IDH_MocA: Oxidore 78.8 21 0.00045 26.5 8.5 93 122-232 2-96 (120)
472 PRK08247 cystathionine gamma-s 78.7 53 0.0011 30.0 12.8 118 108-232 55-176 (366)
473 PRK05476 S-adenosyl-L-homocyst 78.7 15 0.00033 34.6 9.1 87 118-228 210-298 (425)
474 PRK07810 O-succinylhomoserine 78.7 23 0.00049 33.0 10.3 125 104-234 69-197 (403)
475 PLN02514 cinnamyl-alcohol dehy 78.6 24 0.00052 32.0 10.3 97 118-230 179-276 (357)
476 KOG2015 NEDD8-activating compl 78.6 18 0.00039 32.7 8.9 77 121-204 41-138 (422)
477 COG0569 TrkA K+ transport syst 78.6 14 0.00031 31.4 8.3 81 122-215 2-86 (225)
478 PRK00094 gpsA NAD(P)H-dependen 78.5 13 0.00027 33.2 8.4 93 122-226 3-102 (325)
479 PRK05396 tdh L-threonine 3-deh 78.5 21 0.00045 31.9 9.8 100 119-229 163-263 (341)
480 PRK05854 short chain dehydroge 78.5 25 0.00055 31.3 10.2 85 119-204 13-102 (313)
481 PRK08265 short chain dehydroge 78.4 33 0.00071 29.4 10.7 80 119-204 5-89 (261)
482 PF04072 LCM: Leucine carboxyl 78.4 21 0.00045 29.3 8.9 83 120-204 79-166 (183)
483 PTZ00142 6-phosphogluconate de 78.4 21 0.00045 34.1 10.1 127 122-273 3-131 (470)
484 PRK08762 molybdopterin biosynt 78.3 21 0.00046 32.9 9.9 80 119-204 134-234 (376)
485 PRK12439 NAD(P)H-dependent gly 78.2 10 0.00022 34.5 7.7 95 120-226 7-108 (341)
486 PRK07530 3-hydroxybutyryl-CoA 77.9 31 0.00067 30.4 10.5 93 121-226 5-116 (292)
487 PRK05967 cystathionine beta-ly 77.9 42 0.00092 31.3 11.8 114 112-231 71-188 (395)
488 KOG0023 Alcohol dehydrogenase, 77.9 14 0.0003 33.5 8.0 99 118-229 180-279 (360)
489 PRK06234 methionine gamma-lyas 77.9 28 0.00062 32.3 10.7 124 105-234 64-193 (400)
490 PRK08415 enoyl-(acyl carrier p 77.7 43 0.00094 29.1 11.4 83 119-204 4-92 (274)
491 PRK12490 6-phosphogluconate de 77.7 38 0.00082 30.0 11.1 120 122-272 2-123 (299)
492 PRK08818 prephenate dehydrogen 77.5 10 0.00022 35.0 7.5 32 121-153 5-38 (370)
493 PRK05703 flhF flagellar biosyn 77.5 65 0.0014 30.4 14.6 79 120-204 221-308 (424)
494 PRK08045 cystathionine gamma-s 77.4 36 0.00078 31.5 11.2 120 108-234 55-179 (386)
495 COG1893 ApbA Ketopantoate redu 77.4 16 0.00034 32.8 8.5 35 193-227 65-99 (307)
496 PRK06079 enoyl-(acyl carrier p 77.4 35 0.00077 29.1 10.6 78 119-203 6-91 (252)
497 cd08290 ETR 2-enoyl thioester 77.3 26 0.00055 31.2 10.0 102 116-227 143-249 (341)
498 PRK06130 3-hydroxybutyryl-CoA 77.2 30 0.00064 30.8 10.3 94 121-226 5-112 (311)
499 PRK05808 3-hydroxybutyryl-CoA 77.2 32 0.0007 30.1 10.4 92 122-226 5-115 (282)
500 KOG2862 Alanine-glyoxylate ami 77.1 52 0.0011 29.8 11.2 113 118-235 66-186 (385)
No 1
>PLN02476 O-methyltransferase
Probab=100.00 E-value=2e-45 Score=320.35 Aligned_cols=272 Identities=74% Similarity=1.114 Sum_probs=234.4
Q ss_pred Ccccccccceeeeeec------ccchhhhhhccchhhhhhcCCcccCccCCCCceeeeeccccccccccccCCCChhHHH
Q 023645 1 MASSLVANRFAFVLLK------TEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYD 74 (279)
Q Consensus 1 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 74 (279)
|+..++-||-.|+--+ +++++..-++..++ +..|..|+.++ +...+++..|+|++++..+.++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~ 73 (278)
T PLN02476 1 MSTGLALNRCSFSVCRTATTLLNRPTVSVCRSLKFS----RRLIGNCSIAP---ADPVVVANDDKYGNKQVISLTPRLYD 73 (278)
T ss_pred CcchhhhhhhhhhhhhhhheeecCCccchhhhhHHH----HHhhcCCCCCC---CCceEEecchhhcccCcccchHHHHH
Confidence 3445556665554433 23333333333332 33344454332 23678999999999999999999999
Q ss_pred HHHhccCChHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCCh
Q 023645 75 YILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDA 154 (279)
Q Consensus 75 Y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~ 154 (279)
|+.+..++++.+.++++++.....+.|.+++++++++..++...++++|||||||+|+++++++..++++++|+++|.++
T Consensus 74 Y~~~~~~~~~~L~~l~e~a~~~~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~ 153 (278)
T PLN02476 74 YVLSNVREPKILRQLREETSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDS 153 (278)
T ss_pred HHHhcCCCCHHHHHHHHHHHhccCCccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCH
Confidence 99998888999999999998887778999999999999999999999999999999999999999998789999999999
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645 155 RSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234 (279)
Q Consensus 155 ~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g 234 (279)
+..+.|+++++++|+.++++++.||+.+.++.+..++..++||+||+|+++..|..+++.+.++|+|||+|++||++|+|
T Consensus 154 e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G 233 (278)
T PLN02476 154 NSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHG 233 (278)
T ss_pred HHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEecCccCC
Confidence 99999999999999999999999999999987654433468999999999999999999999999999999999999999
Q ss_pred cccCcccCChhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023645 235 KVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 279 (279)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~ 279 (279)
.+.++...+..+.++++|++++.++++++++++|+|||+++++|+
T Consensus 234 ~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPigDGl~i~~K~ 278 (278)
T PLN02476 234 RVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPIGDGMTICRKR 278 (278)
T ss_pred cccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEeCCeeEEEEEC
Confidence 999987777888999999999999999999999999999999996
No 2
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=100.00 E-value=1.5e-41 Score=285.55 Aligned_cols=200 Identities=45% Similarity=0.784 Sum_probs=184.7
Q ss_pred cCChHHHHHHHHHHHccC-CCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHH
Q 023645 80 VREPEILRQLREETAGMR-GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLE 158 (279)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~ 158 (279)
..+++.|.++++.+.... .+.|.+++.+++++..+++..++++||||||++|++++++++++|++++|+++|.+++..+
T Consensus 5 ~~~~~~l~~l~~~t~~~~~~~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~ 84 (205)
T PF01596_consen 5 VREPELLKELREFTRENQGLPQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAE 84 (205)
T ss_dssp TCSTHHHHHHHHHHHCTTTTGGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHH
T ss_pred cCCCHHHHHHHHHHHhCcCCCCCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHH
Confidence 457899999999997765 5678899999999999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCCCCCcccC
Q 023645 159 VAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD 238 (279)
Q Consensus 159 ~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~ 238 (279)
.|+++++++|+.++|+++.||+.+.++.+...+..++||+||+|+++..|..+++.+.++|+|||+|++||++|+|.+.+
T Consensus 85 ~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~ 164 (205)
T PF01596_consen 85 IARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVAD 164 (205)
T ss_dssp HHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGS
T ss_pred HHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccccccceecC
Confidence 99999999999999999999999999988765434689999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023645 239 QMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 279 (279)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~ 279 (279)
+...++.+.++++|++++.++|+++++++|+|||+++|+||
T Consensus 165 ~~~~~~~~~~ir~f~~~i~~d~~~~~~llpigdGl~l~~K~ 205 (205)
T PF01596_consen 165 PDDEDPKTVAIREFNEYIANDPRFETVLLPIGDGLTLARKR 205 (205)
T ss_dssp TTGGSHHHHHHHHHHHHHHH-TTEEEEEECSTTEEEEEEE-
T ss_pred ccchhhhHHHHHHHHHHHHhCCCeeEEEEEeCCeeEEEEEC
Confidence 98788888899999999999999999999999999999997
No 3
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.9e-39 Score=268.28 Aligned_cols=219 Identities=53% Similarity=0.891 Sum_probs=204.7
Q ss_pred cccccCCCChhHHHHHHhc---cCChHHHHHHHHHHHcc--CCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHH
Q 023645 61 SNKQVISVTPPLYDYILRN---VREPEILRQLREETAGM--RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSL 135 (279)
Q Consensus 61 ~~~~~~~~~~~l~~Y~~~~---~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~ 135 (279)
..++....++.+++|+... .++++.+.++++.+... +.+.|.+.+++++++..+++...++++||||+.||++++
T Consensus 10 ~~~~~~~~~~~~~~~~l~~~~~~~e~~~l~el~e~t~~~~~~~~~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL 89 (237)
T KOG1663|consen 10 PDKRLILSDPRLYQYILETTHYPREPELLKELREATLTYPQPGSEMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSAL 89 (237)
T ss_pred cchhcccccchhhhhhhhcccccCCcHHHHHHHHHHhhcCCcccceecChHHHHHHHHHHHHhCCceEEEEecccCHHHH
Confidence 3344677888889999876 57899999999999887 578999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHH
Q 023645 136 AIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELL 215 (279)
Q Consensus 136 ~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~ 215 (279)
.+|.++|++|+|+++|++++..+.+.+.++.+|..++|+++++++.+.++++...++.+.||++|+|+++..|..+++++
T Consensus 90 ~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~ 169 (237)
T KOG1663|consen 90 AVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAFVDADKDNYSNYYERL 169 (237)
T ss_pred HHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEEEccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888889999999999999999999999
Q ss_pred HccCCCCcEEEEeCCCCCCcccCcccCCh-hhHHHH---HHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023645 216 LQLIRVGGIIVIDNVLWHGKVADQMVNDA-KTISIR---NFNKNLMEDERVSISMVPIGDGMTICQKR 279 (279)
Q Consensus 216 ~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~-~~~~~~---~~~~~l~~~~~~~~~~lp~~~G~~i~~~~ 279 (279)
.+++|+||+|++||++|+|.+++|..... .+..++ ++++.|..||+++++++|+|||+++|+|+
T Consensus 170 l~Llr~GGvi~~DNvl~~G~v~~p~~~~~~~~~~~r~~~~~n~~l~~D~rV~~s~~~igdG~~i~~k~ 237 (237)
T KOG1663|consen 170 LRLLRVGGVIVVDNVLWPGVVADPDVNTPVRGRSIREALNLNKKLARDPRVYISLLPIGDGITICRKR 237 (237)
T ss_pred HhhcccccEEEEeccccCCcccCcccCCCcchhhhhhhhhhhhHhccCcceeeEeeeccCceeeeccC
Confidence 99999999999999999998888876554 888899 99999999999999999999999999986
No 4
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=7.5e-39 Score=275.91 Aligned_cols=214 Identities=40% Similarity=0.697 Sum_probs=192.6
Q ss_pred CCCChhHHHHHHhc---cCChHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCC
Q 023645 66 ISVTPPLYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP 142 (279)
Q Consensus 66 ~~~~~~l~~Y~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~ 142 (279)
...++.+++|+.++ .++++.+.++++++.....+.|.+++.+++++..+++..++++|||||+++|+++++++++++
T Consensus 23 ~~~~~~i~~Y~~~~~~~~~~~~~L~~l~~~a~~~~~~~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~ 102 (247)
T PLN02589 23 LLQSDALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALP 102 (247)
T ss_pred ccCcHHHHHHHHHhccCCCCCHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCC
Confidence 34568899999774 367889999999998887778899999999999999999999999999999999999999998
Q ss_pred CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC-CCcEEEEEEeCCccchHHHHHHHHccCCC
Q 023645 143 ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE-ASSYDFAFVDAEKRMYQEYFELLLQLIRV 221 (279)
Q Consensus 143 ~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~-~~~fDlI~id~~~~~~~~~l~~~~~~Lk~ 221 (279)
++++|+++|.+++..+.|+++++.+|+.++|+++.|++.+.++.+...+. .++||+||+|+++..|..+++.+.++|+|
T Consensus 103 ~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~ 182 (247)
T PLN02589 103 EDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKV 182 (247)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999999999999988754321 36899999999999999999999999999
Q ss_pred CcEEEEeCCCCCCcccCcccCC-hh-----hHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023645 222 GGIIVIDNVLWHGKVADQMVND-AK-----TISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 279 (279)
Q Consensus 222 gG~lv~dd~~~~g~~~~~~~~~-~~-----~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~ 279 (279)
||+|++||++|+|.+.++.... .. ..++++|++.+.++++++++++|+|||+++++|+
T Consensus 183 GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~~llPigDGl~l~~k~ 246 (247)
T PLN02589 183 GGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 246 (247)
T ss_pred CeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCccEEEEEe
Confidence 9999999999999998875322 11 1368899999999999999999999999999985
No 5
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=100.00 E-value=1e-37 Score=262.24 Aligned_cols=208 Identities=38% Similarity=0.670 Sum_probs=184.0
Q ss_pred CCCChhHHHHHHhccC--ChHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCC
Q 023645 66 ISVTPPLYDYILRNVR--EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE 143 (279)
Q Consensus 66 ~~~~~~l~~Y~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~ 143 (279)
..+.+.+.+|+.+..+ .+..+.++++.+.....+ .+.++++++|..++...++++|||||++.|+++++|+..+|.
T Consensus 6 ~~~~~~l~~y~~~~~~~~~~~~~~~~~e~a~~~~~p--i~~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~ 83 (219)
T COG4122 6 PNMDEDLYDYLEALIPGEPPALLAELEEFARENGVP--IIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPD 83 (219)
T ss_pred ccchHHHHHHHHhhcccCCchHHHHHHHHhHhcCCC--CCChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCC
Confidence 3467889999999874 455667777666654333 334999999999999999999999999999999999999998
Q ss_pred CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE-cChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCC
Q 023645 144 SGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG 222 (279)
Q Consensus 144 ~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~-gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~g 222 (279)
++++|+||.++++.+.|+++++++|+.++++++. +|+.+.+... ..++||+||+|+++..|+++|+.+.++|+||
T Consensus 84 ~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~----~~~~fDliFIDadK~~yp~~le~~~~lLr~G 159 (219)
T COG4122 84 DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL----LDGSFDLVFIDADKADYPEYLERALPLLRPG 159 (219)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc----cCCCccEEEEeCChhhCHHHHHHHHHHhCCC
Confidence 8999999999999999999999999999999999 6998887752 1689999999999999999999999999999
Q ss_pred cEEEEeCCCCCCcccCcccCChhhH--HHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023645 223 GIIVIDNVLWHGKVADQMVNDAKTI--SIRNFNKNLMEDERVSISMVPIGDGMTICQKR 279 (279)
Q Consensus 223 G~lv~dd~~~~g~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~ 279 (279)
|++++||++|+|.+.++..++..+. ++++|++++.++|+++++++|+|||+++++|+
T Consensus 160 Gliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP~gDGl~v~~k~ 218 (219)
T COG4122 160 GLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLPLGDGLLLSRKR 218 (219)
T ss_pred cEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEecCCceEEEeec
Confidence 9999999999999999865554444 59999999999999999999999999999985
No 6
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=2.5e-37 Score=266.24 Aligned_cols=213 Identities=42% Similarity=0.681 Sum_probs=190.1
Q ss_pred CCChhHHHHHHhc---cCChHHHHHHHHHHHcc--CCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHC
Q 023645 67 SVTPPLYDYILRN---VREPEILRQLREETAGM--RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL 141 (279)
Q Consensus 67 ~~~~~l~~Y~~~~---~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~ 141 (279)
..++.+++|+.++ .++++.+.++++++... ..+.|.+.+.+++++..++...++++|||||||+|+++++++..+
T Consensus 11 ~~~~~~~~y~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~ 90 (234)
T PLN02781 11 LKSEALKQYIMETSAYPREHELLKELREATVQKYGNLSEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALAL 90 (234)
T ss_pred CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHhccccCcccccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhC
Confidence 3457889999764 46889999999999765 235688999999999999999999999999999999999999998
Q ss_pred CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCC
Q 023645 142 PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRV 221 (279)
Q Consensus 142 ~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~ 221 (279)
+++++|+++|+++++++.|+++++.+|+.++++++.+|+.+.++.+...+..++||+||+|+.+..|..+++.+.++|+|
T Consensus 91 ~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~ 170 (234)
T PLN02781 91 PEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKV 170 (234)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCC
Confidence 87889999999999999999999999999999999999999888765443346899999999999999999999999999
Q ss_pred CcEEEEeCCCCCCcccCcccCC-----hhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023645 222 GGIIVIDNVLWHGKVADQMVND-----AKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 279 (279)
Q Consensus 222 gG~lv~dd~~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~ 279 (279)
||+|++||++|+|.+.++.... ..+.++++|++++.++++++++++|+|||+++++|+
T Consensus 171 GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~lp~gdG~~i~~k~ 233 (234)
T PLN02781 171 GGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQISIGDGVTLCRRL 233 (234)
T ss_pred CeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEEEEeCCccEEEEEe
Confidence 9999999999999998875422 135689999999999999999999999999999984
No 7
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.77 E-value=1.7e-18 Score=150.61 Aligned_cols=162 Identities=14% Similarity=0.214 Sum_probs=137.7
Q ss_pred CceeeeeccccccccccccCCCChhHHHHHHhccCChH-HHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEE
Q 023645 47 TTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPE-ILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIE 125 (279)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLE 125 (279)
.....++.+|||..+..+.+.+++.. .|.++..++++ .|.+.+...... +...+.+.++++|||
T Consensus 14 ~~~~~~i~~HYDl~n~fy~l~Ld~~~-~Yscayf~~~~~tL~eAQ~~k~~~--------------~~~kl~L~~G~~lLD 78 (283)
T COG2230 14 RRAAENIQAHYDLSNDFYRLFLDPSM-TYSCAYFEDPDMTLEEAQRAKLDL--------------ILEKLGLKPGMTLLD 78 (283)
T ss_pred cchhhhhhhHhhcchHHHHHhcCCCC-ceeeEEeCCCCCChHHHHHHHHHH--------------HHHhcCCCCCCEEEE
Confidence 35677899999999999999999985 99999877654 566666555432 445566788999999
Q ss_pred EcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeC--
Q 023645 126 VGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA-- 203 (279)
Q Consensus 126 iG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~-- 203 (279)
||||+|..++++|+.. +.+|+|+++|+++.+.+++.+...|++.+++++..|..+. .++||-|+.-.
T Consensus 79 iGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~---------~e~fDrIvSvgmf 147 (283)
T COG2230 79 IGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF---------EEPFDRIVSVGMF 147 (283)
T ss_pred eCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc---------ccccceeeehhhH
Confidence 9999999999999987 5899999999999999999999999998899999998755 46699998754
Q ss_pred ---CccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645 204 ---EKRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234 (279)
Q Consensus 204 ---~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g 234 (279)
..+.+..||+.+.++|+|||.++++.+..+.
T Consensus 148 Ehvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 148 EHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred HHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 3677999999999999999999999988655
No 8
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.75 E-value=6.9e-18 Score=128.54 Aligned_cols=104 Identities=22% Similarity=0.391 Sum_probs=87.8
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl 198 (279)
++.+|||||||+|..+..+++..+ +++|+++|+++++++.|++++...+..++++++++|+ ...... .++||+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~-----~~~~D~ 73 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF-----LEPFDL 73 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT-----SSCEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc-----CCCCCE
Confidence 467999999999999999999655 7899999999999999999998788888999999999 332222 468999
Q ss_pred EEEeC-Cc------cchHHHHHHHHccCCCCcEEEEeC
Q 023645 199 AFVDA-EK------RMYQEYFELLLQLIRVGGIIVIDN 229 (279)
Q Consensus 199 I~id~-~~------~~~~~~l~~~~~~Lk~gG~lv~dd 229 (279)
|++.. .. +....+++.+.+.|+|||+++++.
T Consensus 74 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 74 VICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99988 32 234567999999999999999974
No 9
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.75 E-value=3.9e-18 Score=149.86 Aligned_cols=164 Identities=15% Similarity=0.216 Sum_probs=116.2
Q ss_pred CceeeeeccccccccccccCCCChhHHHHHHhccC-ChHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEE
Q 023645 47 TTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVR-EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIE 125 (279)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLE 125 (279)
.....++.+|||.....+.+.+++.+ .|.+...+ +.+.|++++...... +...+.+.++.+|||
T Consensus 4 ~~~~~~i~~hYDl~ndfy~l~Ld~~m-~YS~~~~~~~~~~Le~AQ~~k~~~--------------~~~~~~l~~G~~vLD 68 (273)
T PF02353_consen 4 KQSRENISAHYDLGNDFYRLFLDPTM-KYSCAYFDEGDDTLEEAQERKLDL--------------LCEKLGLKPGDRVLD 68 (273)
T ss_dssp ---HHHHHHHHTS-HHHHTTTS-TT----S----SSTT--HHHHHHHHHHH--------------HHTTTT--TT-EEEE
T ss_pred chHHHHHHHHcCCcHHHHHHhcCCCC-CCCCeecCCchhhHHHHHHHHHHH--------------HHHHhCCCCCCEEEE
Confidence 34567788999998888889999985 88888754 456677777665432 444456778999999
Q ss_pred EcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC-
Q 023645 126 VGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE- 204 (279)
Q Consensus 126 iG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~- 204 (279)
||||+|..+.++++.. +++|+|+++|++..+.+++.++..|+.+++++..+|..+. ..+||.|+.-..
T Consensus 69 iGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~---------~~~fD~IvSi~~~ 137 (273)
T PF02353_consen 69 IGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL---------PGKFDRIVSIEMF 137 (273)
T ss_dssp ES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------------S-SEEEEESEG
T ss_pred eCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc---------CCCCCEEEEEech
Confidence 9999999999999986 5899999999999999999999999999999999998754 459999987543
Q ss_pred ----ccchHHHHHHHHccCCCCcEEEEeCCCCCCcc
Q 023645 205 ----KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKV 236 (279)
Q Consensus 205 ----~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~ 236 (279)
...+..+|+.+.++|+|||.++++.+......
T Consensus 138 Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~ 173 (273)
T PF02353_consen 138 EHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPP 173 (273)
T ss_dssp GGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HH
T ss_pred hhcChhHHHHHHHHHHHhcCCCcEEEEEeccccccc
Confidence 46788999999999999999999988765543
No 10
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.72 E-value=4.2e-16 Score=127.05 Aligned_cols=150 Identities=24% Similarity=0.298 Sum_probs=117.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (279)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~ 181 (279)
.+.++.-.+....+...++.+++|||||+|..++.++...| .++++++|.++++++..++|.++.|.+ +++++.|++.
T Consensus 17 ~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p-~~~v~AIe~~~~a~~~~~~N~~~fg~~-n~~vv~g~Ap 94 (187)
T COG2242 17 MTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGVD-NLEVVEGDAP 94 (187)
T ss_pred CcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCC-cEEEEeccch
Confidence 44555555555666777889999999999999999995554 899999999999999999999999965 5999999999
Q ss_pred hHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCC
Q 023645 182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDER 261 (279)
Q Consensus 182 ~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (279)
+.++.+ .+||.||+.+. ......++.++..|||||.||++-+..... ....+.+.+...
T Consensus 95 ~~L~~~------~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~naitlE~~--------------~~a~~~~~~~g~ 153 (187)
T COG2242 95 EALPDL------PSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAITLETL--------------AKALEALEQLGG 153 (187)
T ss_pred HhhcCC------CCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeecHHHH--------------HHHHHHHHHcCC
Confidence 988753 38999999998 888999999999999999999987654322 223334433333
Q ss_pred eEEEEeecCCceE
Q 023645 262 VSISMVPIGDGMT 274 (279)
Q Consensus 262 ~~~~~lp~~~G~~ 274 (279)
.+++.+-+..|.-
T Consensus 154 ~ei~~v~is~~~~ 166 (187)
T COG2242 154 REIVQVQISRGKP 166 (187)
T ss_pred ceEEEEEeeccee
Confidence 3666666655543
No 11
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.70 E-value=1.4e-15 Score=128.06 Aligned_cols=112 Identities=21% Similarity=0.429 Sum_probs=96.4
Q ss_pred HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645 114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (279)
Q Consensus 114 l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~ 193 (279)
.....++.+|||+|||+|..+..+++..++.++|+++|+++++++.++++++..++.++++++.+|+.+.++.. .
T Consensus 35 ~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~-----~ 109 (198)
T PRK00377 35 KLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI-----N 109 (198)
T ss_pred HcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc-----C
Confidence 34456778999999999999999998776568999999999999999999999886667999999998766543 4
Q ss_pred CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645 194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (279)
Q Consensus 194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~ 230 (279)
++||.||++.....+..+++.+.+.|+|||.++++.+
T Consensus 110 ~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 110 EKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEee
Confidence 6899999987777788899999999999999998655
No 12
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.69 E-value=1.8e-15 Score=126.19 Aligned_cols=118 Identities=25% Similarity=0.319 Sum_probs=96.3
Q ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (279)
Q Consensus 103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~ 182 (279)
+.+.....+...+...++.+|||+|||+|..+..+++..+ +++|+++|+++++++.++++++..++. +++++.+|+..
T Consensus 15 ~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~ 92 (187)
T PRK08287 15 TKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI 92 (187)
T ss_pred chHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh
Confidence 3444444444455556778999999999999999998876 689999999999999999999988875 59999998742
Q ss_pred HHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645 183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (279)
Q Consensus 183 ~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~ 230 (279)
. + .++||+|+++.....+..+++.+.+.|+|||++++..+
T Consensus 93 ~---~-----~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 93 E---L-----PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred h---c-----CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEe
Confidence 2 1 36899999987766778889999999999999999654
No 13
>PRK04457 spermidine synthase; Provisional
Probab=99.68 E-value=3e-15 Score=131.16 Aligned_cols=112 Identities=20% Similarity=0.258 Sum_probs=93.3
Q ss_pred HHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhC
Q 023645 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 190 (279)
Q Consensus 111 l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~ 190 (279)
+..+....++++|||||||+|.++.++++..| +.+++++|+++++++.|++++...+..++++++.+|+.+.++..
T Consensus 58 ~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~--- 133 (262)
T PRK04457 58 MGFLLFNPRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH--- 133 (262)
T ss_pred HHHHhcCCCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC---
Confidence 33333345678999999999999999999887 78999999999999999999876555568999999999887654
Q ss_pred CCCCcEEEEEEeCCcc-------chHHHHHHHHccCCCCcEEEEe
Q 023645 191 GEASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 191 ~~~~~fDlI~id~~~~-------~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
.++||+|++|.... ...++++.+.+.|+|||+++++
T Consensus 134 --~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 134 --RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred --CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 46899999986422 1368999999999999999995
No 14
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.68 E-value=1e-15 Score=118.32 Aligned_cols=109 Identities=25% Similarity=0.401 Sum_probs=91.7
Q ss_pred HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645 114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (279)
Q Consensus 114 l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~ 193 (279)
.....+..+|||+|||+|..+..+++..+ +++|+++|+++.+++.++++++..+.. +++++.+|+.+.++.. .
T Consensus 14 ~~~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~ 86 (124)
T TIGR02469 14 KLRLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDS-----L 86 (124)
T ss_pred HcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhh-----c
Confidence 33444567999999999999999999887 589999999999999999999988776 5899999876433332 4
Q ss_pred CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645 194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229 (279)
Q Consensus 194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd 229 (279)
++||.|+++........+++.+.+.|+|||.+++.-
T Consensus 87 ~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 87 PEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence 689999998877777889999999999999999863
No 15
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.67 E-value=1.2e-15 Score=129.83 Aligned_cols=118 Identities=24% Similarity=0.361 Sum_probs=97.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (279)
Q Consensus 101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~ 180 (279)
..+.|.....+...+...++.+|||||||+|+.+..+++..+.+++|+++|+++++++.++++++..+.. +++++++|+
T Consensus 58 ~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~ 136 (212)
T PRK13942 58 TISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDG 136 (212)
T ss_pred EeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCc
Confidence 3466777777777777888899999999999999999988765689999999999999999999988875 599999998
Q ss_pred hhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645 181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 181 ~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
.+..+. .++||+|++++...... +.+.+.|+|||.+++.
T Consensus 137 ~~~~~~------~~~fD~I~~~~~~~~~~---~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 137 TLGYEE------NAPYDRIYVTAAGPDIP---KPLIEQLKDGGIMVIP 175 (212)
T ss_pred ccCCCc------CCCcCEEEECCCcccch---HHHHHhhCCCcEEEEE
Confidence 754321 47899999987655443 4567789999999884
No 16
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.66 E-value=2e-15 Score=125.10 Aligned_cols=102 Identities=23% Similarity=0.389 Sum_probs=87.9
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
..++.+|||+|||+|..+..++...+ +++|+++|.++++++.++++.++.++.+ ++++++|+.+... .++|
T Consensus 40 ~~~~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~~~~-------~~~f 110 (181)
T TIGR00138 40 YLDGKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAEDFQH-------EEQF 110 (181)
T ss_pred hcCCCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhhccc-------cCCc
Confidence 34578999999999999999987665 6899999999999999999999988864 9999999976421 4789
Q ss_pred EEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
|+|++++ ..++..+++.+.++|+|||.+++.
T Consensus 111 D~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 111 DVITSRA-LASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred cEEEehh-hhCHHHHHHHHHHhcCCCCEEEEE
Confidence 9999987 566778899999999999999974
No 17
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.66 E-value=7.6e-16 Score=131.71 Aligned_cols=113 Identities=19% Similarity=0.263 Sum_probs=97.6
Q ss_pred HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645 113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (279)
Q Consensus 113 ~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~ 192 (279)
......++.+|||+|||||..+..+++..+ .++|+++|+|+.|++.|++.....+..+ ++++++|+.+. |. +
T Consensus 45 ~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~L-Pf-----~ 116 (238)
T COG2226 45 SLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENL-PF-----P 116 (238)
T ss_pred HhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhC-CC-----C
Confidence 333334789999999999999999999988 8999999999999999999999988877 99999999754 32 2
Q ss_pred CCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645 193 ASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH 233 (279)
Q Consensus 193 ~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~ 233 (279)
+.+||+|.+... ..+....|+++.|+|||||.+++-+..-+
T Consensus 117 D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 117 DNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred CCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 789999998765 56788999999999999999998777654
No 18
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.66 E-value=1.4e-15 Score=129.62 Aligned_cols=116 Identities=22% Similarity=0.404 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (279)
Q Consensus 103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~ 182 (279)
..|.....+...+...++.+|||||||+|+.+..+++..+.+++|+++|+++++++.|+++++..++. +++++++|+.+
T Consensus 61 ~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~~ 139 (215)
T TIGR00080 61 SAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGTQ 139 (215)
T ss_pred chHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCccc
Confidence 44555555666667778899999999999999999998765678999999999999999999999884 59999999876
Q ss_pred HHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645 183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 183 ~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
.++. ..+||+|++++..... .+.+.+.|+|||.+++.
T Consensus 140 ~~~~------~~~fD~Ii~~~~~~~~---~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 140 GWEP------LAPYDRIYVTAAGPKI---PEALIDQLKEGGILVMP 176 (215)
T ss_pred CCcc------cCCCCEEEEcCCcccc---cHHHHHhcCcCcEEEEE
Confidence 4332 3689999998765544 34577889999999984
No 19
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.66 E-value=1.4e-15 Score=128.76 Aligned_cols=116 Identities=22% Similarity=0.308 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHH
Q 023645 105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 184 (279)
Q Consensus 105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l 184 (279)
+.....+...+...++.+|||||||+|+.+..+++.++..++|+++|+++++++.|+++++..++.++++++.+|+.+.+
T Consensus 58 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~ 137 (205)
T PRK13944 58 PHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL 137 (205)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC
Confidence 44444444445556678999999999999999999876568999999999999999999999888777999999997644
Q ss_pred HHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645 185 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229 (279)
Q Consensus 185 ~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd 229 (279)
+. .++||+|+++...... .+.+.+.|+|||.|++..
T Consensus 138 ~~------~~~fD~Ii~~~~~~~~---~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 138 EK------HAPFDAIIVTAAASTI---PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cc------CCCccEEEEccCcchh---hHHHHHhcCcCcEEEEEE
Confidence 32 4689999999775543 356788999999999854
No 20
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=1.1e-15 Score=129.89 Aligned_cols=138 Identities=20% Similarity=0.318 Sum_probs=118.7
Q ss_pred CChhHHHHHHhccCChHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEE
Q 023645 68 VTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCL 147 (279)
Q Consensus 68 ~~~~l~~Y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v 147 (279)
+.+.+.+|++. +++....+.|....++.....+.++.+|+|.|+|+|..+.+|+.++.+.++|
T Consensus 60 l~p~~~d~~~~-----------------~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v 122 (256)
T COG2519 60 LKPTPEDYLLS-----------------MKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHV 122 (256)
T ss_pred eCCCHHHHHHh-----------------CcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceE
Confidence 55566677765 4555556788888888899999999999999999999999999998878999
Q ss_pred EEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 148 VACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 148 ~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
+++|+.++.++.|++|++..++.+++++..+|..+... +..||.||+|.+. ..++++.+...|+|||.+++
T Consensus 123 ~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~-------~~~vDav~LDmp~--PW~~le~~~~~Lkpgg~~~~ 193 (256)
T COG2519 123 TTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID-------EEDVDAVFLDLPD--PWNVLEHVSDALKPGGVVVV 193 (256)
T ss_pred EEEEecHHHHHHHHHHHHHhccccceEEEecccccccc-------ccccCEEEEcCCC--hHHHHHHHHHHhCCCcEEEE
Confidence 99999999999999999999999999999999987654 4599999999764 44889999999999999998
Q ss_pred eCCC
Q 023645 228 DNVL 231 (279)
Q Consensus 228 dd~~ 231 (279)
-...
T Consensus 194 y~P~ 197 (256)
T COG2519 194 YSPT 197 (256)
T ss_pred EcCC
Confidence 5444
No 21
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.65 E-value=8.5e-16 Score=132.19 Aligned_cols=115 Identities=21% Similarity=0.246 Sum_probs=84.1
Q ss_pred HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645 113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (279)
Q Consensus 113 ~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~ 192 (279)
.+....++.+|||+|||||..+..+++..++.++|+++|+|++|++.|++..+..+.. +++++++|+.+. +.-
T Consensus 41 ~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~l-p~~----- 113 (233)
T PF01209_consen 41 KLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDL-PFP----- 113 (233)
T ss_dssp HHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB---S------
T ss_pred hccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHh-cCC-----
Confidence 3445567789999999999999999998876789999999999999999999988876 699999999764 322
Q ss_pred CCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645 193 ASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234 (279)
Q Consensus 193 ~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g 234 (279)
+++||.|++... ..+....+++++++|||||.+++-+...+.
T Consensus 114 d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 114 DNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred CCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 689999998765 456788999999999999999987665443
No 22
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.64 E-value=2.8e-15 Score=124.70 Aligned_cols=100 Identities=20% Similarity=0.368 Sum_probs=87.6
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl 198 (279)
++.+|||+|||+|..++.++...+ +++|+++|.++++++.|+++.+..++++ ++++++|+.+... .++||+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~-------~~~fDl 115 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ-------EEKFDV 115 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC-------CCCccE
Confidence 368999999999999999998766 7899999999999999999999999876 9999999976321 368999
Q ss_pred EEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645 199 AFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 199 I~id~~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
|+++. ...+..+++.+.+.|+|||.+++-
T Consensus 116 V~~~~-~~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 116 VTSRA-VASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred EEEcc-ccCHHHHHHHHHHhcCCCeEEEEE
Confidence 99976 356778999999999999999985
No 23
>PLN03075 nicotianamine synthase; Provisional
Probab=99.63 E-value=3.3e-15 Score=131.46 Aligned_cols=119 Identities=18% Similarity=0.195 Sum_probs=95.8
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcCccC-HHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHH-hCCCCcEEEEEcChh
Q 023645 104 SPDQAQLLAMLVQILGAQRCIEVGVYTG-YSSLAIALVLPESGCLVACERDARSLEVAKKYYER-AGVSHKVKIKHGLAA 181 (279)
Q Consensus 104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G-~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~-~g~~~~v~~~~gd~~ 181 (279)
.+-++.++..+... ++++|+|||||.| ++++.++....++++++++|.++++++.|++.++. .++.++++|+.+|+.
T Consensus 109 ~~lE~~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~ 187 (296)
T PLN03075 109 SKLEFDLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVM 187 (296)
T ss_pred HHHHHHHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchh
Confidence 34455555555554 8899999999955 55666665544488999999999999999999965 889889999999998
Q ss_pred hHHHHHHhCCCCCcEEEEEEeC----CccchHHHHHHHHccCCCCcEEEEeC
Q 023645 182 DSLKALILNGEASSYDFAFVDA----EKRMYQEYFELLLQLIRVGGIIVIDN 229 (279)
Q Consensus 182 ~~l~~~~~~~~~~~fDlI~id~----~~~~~~~~l~~~~~~Lk~gG~lv~dd 229 (279)
+..+. .++||+||+++ .+.....+++.+.+.|+|||++++..
T Consensus 188 ~~~~~------l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 188 DVTES------LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred hcccc------cCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 74322 37899999985 25788899999999999999999976
No 24
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.63 E-value=2.9e-15 Score=120.64 Aligned_cols=109 Identities=17% Similarity=0.320 Sum_probs=91.0
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl 198 (279)
+..+|||+|||+|..+..+++...++++++|+|+++++++.|++.++..+.. +++++++|+.+ ++... .++||+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~----~~~~D~ 76 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQEL----EEKFDI 76 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCS----STTEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-ccccc----CCCeeE
Confidence 4679999999999999999965555789999999999999999999999987 69999999987 43210 268999
Q ss_pred EEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645 199 AFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH 233 (279)
Q Consensus 199 I~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~ 233 (279)
|++... ..+....++.+.+.|++||.+++.+..+.
T Consensus 77 I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~ 114 (152)
T PF13847_consen 77 IISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPNHN 114 (152)
T ss_dssp EEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHS
T ss_pred EEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECChH
Confidence 999865 34456789999999999999999887643
No 25
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.62 E-value=4.9e-15 Score=121.68 Aligned_cols=109 Identities=22% Similarity=0.361 Sum_probs=89.6
Q ss_pred HHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHh
Q 023645 110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 189 (279)
Q Consensus 110 ~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~ 189 (279)
+|...+...+..+|||+|||+|..++.+++..+ ..+|+++|+++.+++.++++++.+++.+ ++++.+|..+.++
T Consensus 22 lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~---- 95 (170)
T PF05175_consen 22 LLLDNLPKHKGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP---- 95 (170)
T ss_dssp HHHHHHHHHTTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC----
T ss_pred HHHHHHhhccCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc----
Confidence 444545545788999999999999999999876 6689999999999999999999999987 9999999876543
Q ss_pred CCCCCcEEEEEEeCCcc--------chHHHHHHHHccCCCCcEEEE
Q 023645 190 NGEASSYDFAFVDAEKR--------MYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 190 ~~~~~~fDlI~id~~~~--------~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
.++||+|+++++.. ....+++.+.++|+|||.+++
T Consensus 96 ---~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 96 ---DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp ---TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ---ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 48999999997621 256778888999999998865
No 26
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.62 E-value=2.5e-14 Score=120.10 Aligned_cols=123 Identities=23% Similarity=0.349 Sum_probs=99.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC
Q 023645 100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 179 (279)
Q Consensus 100 ~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd 179 (279)
.+.+.++...++...+...++.+|||+|||+|..+..+++..+ +++|+++|+++++++.++++++..+.. +++++.+|
T Consensus 21 ~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d 98 (196)
T PRK07402 21 IPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGS 98 (196)
T ss_pred CCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECc
Confidence 3455666666666666666778999999999999999987665 689999999999999999999988875 59999999
Q ss_pred hhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645 180 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (279)
Q Consensus 180 ~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~ 230 (279)
+.+.++.+ ...+|.++++.. .....+++.+.+.|+|||.+++...
T Consensus 99 ~~~~~~~~-----~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 99 APECLAQL-----APAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred hHHHHhhC-----CCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 97655433 345788888764 3457889999999999999999754
No 27
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.61 E-value=1e-14 Score=125.73 Aligned_cols=132 Identities=21% Similarity=0.255 Sum_probs=101.7
Q ss_pred HHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCC
Q 023645 92 ETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH 171 (279)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~ 171 (279)
.+..+++....+.+....++...+.+.++.+|||.|+|+|..|.++++.+.+.|+|+++|.+++.++.|+++++.+|+.+
T Consensus 13 ~~~~l~rrtQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~ 92 (247)
T PF08704_consen 13 WTLSLPRRTQIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDD 92 (247)
T ss_dssp HHHTS-SSS----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCT
T ss_pred HHHhccCCcceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCC
Confidence 34446666667889999999999999999999999999999999999998878999999999999999999999999998
Q ss_pred cEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccC-CCCcEEEEe
Q 023645 172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLI-RVGGIIVID 228 (279)
Q Consensus 172 ~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~L-k~gG~lv~d 228 (279)
++++.++|+.+.-. ..+.+..+|.||+|-+..+ .++..+.+.| ++||.|++-
T Consensus 93 ~v~~~~~Dv~~~g~---~~~~~~~~DavfLDlp~Pw--~~i~~~~~~L~~~gG~i~~f 145 (247)
T PF08704_consen 93 NVTVHHRDVCEEGF---DEELESDFDAVFLDLPDPW--EAIPHAKRALKKPGGRICCF 145 (247)
T ss_dssp TEEEEES-GGCG-----STT-TTSEEEEEEESSSGG--GGHHHHHHHE-EEEEEEEEE
T ss_pred CceeEecceecccc---cccccCcccEEEEeCCCHH--HHHHHHHHHHhcCCceEEEE
Confidence 99999999964211 0001468999999987544 6678888999 899999983
No 28
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.60 E-value=1.1e-14 Score=122.88 Aligned_cols=122 Identities=19% Similarity=0.263 Sum_probs=95.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC
Q 023645 100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 179 (279)
Q Consensus 100 ~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd 179 (279)
.+.+++....+...+.. ++.+|||+|||+|..+..+++..+ +.+|+++|+++++++.|++++...++. +++++++|
T Consensus 23 ~~~~~~~~~~~~~~~~~--~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d 98 (202)
T PRK00121 23 WPRLSPAPLDWAELFGN--DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGLT-NLRLLCGD 98 (202)
T ss_pred chhhcCCCCCHHHHcCC--CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCCC-CEEEEecC
Confidence 34555666666666655 667999999999999999998876 679999999999999999999888874 59999999
Q ss_pred hhhHHHHHHhCCCCCcEEEEEEeCCcc-----------chHHHHHHHHccCCCCcEEEEe
Q 023645 180 AADSLKALILNGEASSYDFAFVDAEKR-----------MYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 180 ~~~~l~~~~~~~~~~~fDlI~id~~~~-----------~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
+.+.++... .+++||.|++..... ....+++.+.++|+|||++++.
T Consensus 99 ~~~~l~~~~---~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 99 AVEVLLDMF---PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred HHHHHHHHc---CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence 944444221 146899999864211 1567899999999999999984
No 29
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=8.8e-15 Score=121.83 Aligned_cols=118 Identities=26% Similarity=0.412 Sum_probs=99.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE
Q 023645 98 GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH 177 (279)
Q Consensus 98 ~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~ 177 (279)
.+.....|.....+.+++...++.+|||||||+||.+..|++.. ++|+++|..++..+.|+++++..|+.+ |.+++
T Consensus 51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~ 126 (209)
T COG2518 51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYEN-VTVRH 126 (209)
T ss_pred CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEE
Confidence 33445677777778888888999999999999999999999875 499999999999999999999999987 99999
Q ss_pred cChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645 178 GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 178 gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
+|...-.+. ..+||.|++.+.....+. .+...|++||.+++-
T Consensus 127 gDG~~G~~~------~aPyD~I~Vtaaa~~vP~---~Ll~QL~~gGrlv~P 168 (209)
T COG2518 127 GDGSKGWPE------EAPYDRIIVTAAAPEVPE---ALLDQLKPGGRLVIP 168 (209)
T ss_pred CCcccCCCC------CCCcCEEEEeeccCCCCH---HHHHhcccCCEEEEE
Confidence 999765543 489999999987655444 456778999999983
No 30
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.60 E-value=3.2e-14 Score=133.32 Aligned_cols=158 Identities=22% Similarity=0.250 Sum_probs=116.2
Q ss_pred HHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHH
Q 023645 107 QAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA 186 (279)
Q Consensus 107 ~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~ 186 (279)
...++..++...++.+|||+|||+|..+..+++.++..++|+++|+++.+++.++++++..|+.+ ++++++|+.+....
T Consensus 240 ~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~ 318 (434)
T PRK14901 240 SAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLEL 318 (434)
T ss_pred HHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcccc
Confidence 34445555566678899999999999999999987656899999999999999999999999875 99999998754321
Q ss_pred HHhCCCCCcEEEEEEeCCccc-------------------------hHHHHHHHHccCCCCcEEEEeCCCCCCcccCccc
Q 023645 187 LILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMV 241 (279)
Q Consensus 187 ~~~~~~~~~fDlI~id~~~~~-------------------------~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~ 241 (279)
... ..++||.|++|++... ....++.+.++|||||.|+...+.......
T Consensus 319 ~~~--~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~En---- 392 (434)
T PRK14901 319 KPQ--WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAEN---- 392 (434)
T ss_pred ccc--ccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhH----
Confidence 100 0368999999975211 246788889999999999987765443211
Q ss_pred CChhhHHHHHHHHHhhhCCCeEEE-----Eeec---CCceEEEEE
Q 023645 242 NDAKTISIRNFNKNLMEDERVSIS-----MVPI---GDGMTICQK 278 (279)
Q Consensus 242 ~~~~~~~~~~~~~~l~~~~~~~~~-----~lp~---~~G~~i~~~ 278 (279)
.......+..+|+++.. ++|- .||+-+|+.
T Consensus 393 -------e~~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l 430 (434)
T PRK14901 393 -------EAQIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVL 430 (434)
T ss_pred -------HHHHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEEE
Confidence 12233444567777654 4554 599999975
No 31
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.59 E-value=1.5e-14 Score=126.37 Aligned_cols=102 Identities=22% Similarity=0.326 Sum_probs=87.5
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl 198 (279)
++.+|||+|||+|..+..+++. +.+|+++|+++++++.|+++.+..++.++++++++|+.+..+.. +++||+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~-----~~~fD~ 115 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL-----ETPVDL 115 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc-----CCCCCE
Confidence 4679999999999999999985 46999999999999999999998888778999999997754332 578999
Q ss_pred EEEeCC---ccchHHHHHHHHccCCCCcEEEEe
Q 023645 199 AFVDAE---KRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 199 I~id~~---~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
|++... ..+...+++.+.++|||||++++-
T Consensus 116 V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 116 ILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred EEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 998764 345678899999999999999874
No 32
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.59 E-value=2.5e-14 Score=122.98 Aligned_cols=113 Identities=19% Similarity=0.312 Sum_probs=92.1
Q ss_pred HHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhC
Q 023645 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 190 (279)
Q Consensus 111 l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~ 190 (279)
+...+...++.+|||+|||+|..+..+++..+++++|+++|+++++++.++++++..++ ++++++++|+.+.. .
T Consensus 37 ~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~--~--- 110 (231)
T TIGR02752 37 TMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELP--F--- 110 (231)
T ss_pred HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCC--C---
Confidence 33444555678999999999999999999876578999999999999999999987777 46999999986532 1
Q ss_pred CCCCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCC
Q 023645 191 GEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV 230 (279)
Q Consensus 191 ~~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~ 230 (279)
.+++||+|++... ..++...++.+.++|+|||.+++.+.
T Consensus 111 -~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 111 -DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred -CCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 1578999998653 44567889999999999999987554
No 33
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.58 E-value=2.7e-14 Score=125.21 Aligned_cols=114 Identities=11% Similarity=0.090 Sum_probs=89.7
Q ss_pred HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHH--hCCCCcEEEEEcChhhHHHHHHhCC
Q 023645 114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER--AGVSHKVKIKHGLAADSLKALILNG 191 (279)
Q Consensus 114 l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~--~g~~~~v~~~~gd~~~~l~~~~~~~ 191 (279)
.....++.+|||+|||+|..+..+++..++.++|+|+|+|++|++.|+++... .+...+++++++|+.+. +.
T Consensus 68 ~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p~----- 141 (261)
T PLN02233 68 WSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-PF----- 141 (261)
T ss_pred HhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-CC-----
Confidence 34455678999999999999999998765567999999999999999876542 22334699999998653 21
Q ss_pred CCCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645 192 EASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH 233 (279)
Q Consensus 192 ~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~ 233 (279)
.+++||+|++... ..+...+++++.+.|||||.+++-+...+
T Consensus 142 ~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 142 DDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred CCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 1578999988643 44677899999999999999998776543
No 34
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.58 E-value=8.9e-14 Score=123.29 Aligned_cols=118 Identities=17% Similarity=0.245 Sum_probs=94.3
Q ss_pred CCHHHHHHHHHHHh----hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc
Q 023645 103 VSPDQAQLLAMLVQ----ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178 (279)
Q Consensus 103 ~~~~~~~~l~~l~~----~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g 178 (279)
..+++..++...+. ..++.+|||+|||+|..+..+++..+ +.+|+++|+|+.+++.|+++++..++.++++++++
T Consensus 101 pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~ 179 (284)
T TIGR03533 101 PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQS 179 (284)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 45566666665443 12457999999999999999999876 68999999999999999999999998878999999
Q ss_pred ChhhHHHHHHhCCCCCcEEEEEEeCCc----------------------------cchHHHHHHHHccCCCCcEEEEe
Q 023645 179 LAADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 179 d~~~~l~~~~~~~~~~~fDlI~id~~~----------------------------~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
|+.+.++ .++||+|+++++. ..+..++..+.+.|+|||.++++
T Consensus 180 D~~~~~~-------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 180 DLFAALP-------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred chhhccC-------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9865432 3579999998641 11345677778999999999985
No 35
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.57 E-value=1.3e-14 Score=122.67 Aligned_cols=117 Identities=23% Similarity=0.377 Sum_probs=91.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (279)
Q Consensus 101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~ 180 (279)
....|..-..+..++...++.+|||||||+|+.+..++....+.++|+++|.++...+.|+++++..+.. +++++++|.
T Consensus 54 ~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg 132 (209)
T PF01135_consen 54 TISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDG 132 (209)
T ss_dssp EE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-G
T ss_pred echHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcch
Confidence 3455666666666777888999999999999999999998776789999999999999999999999987 599999998
Q ss_pred hhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 181 ~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
....+. .++||.|++.+.....+. .+...|++||.||+
T Consensus 133 ~~g~~~------~apfD~I~v~~a~~~ip~---~l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 133 SEGWPE------EAPFDRIIVTAAVPEIPE---ALLEQLKPGGRLVA 170 (209)
T ss_dssp GGTTGG------G-SEEEEEESSBBSS--H---HHHHTEEEEEEEEE
T ss_pred hhcccc------CCCcCEEEEeeccchHHH---HHHHhcCCCcEEEE
Confidence 765443 478999999987665443 46678999999998
No 36
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.57 E-value=1.1e-13 Score=129.32 Aligned_cols=126 Identities=19% Similarity=0.292 Sum_probs=101.3
Q ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (279)
Q Consensus 103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~ 182 (279)
+.....+++..++...++.+|||+|||+|..|..++..++.+++|+++|+++.+++.+++++++.|+.+ ++++++|+.+
T Consensus 221 ~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~Da~~ 299 (431)
T PRK14903 221 VQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIADAER 299 (431)
T ss_pred EECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhh
Confidence 344445566666677788899999999999999999988667899999999999999999999999864 9999999875
Q ss_pred HHHHHHhCCCCCcEEEEEEeCCcc-------------------------chHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645 183 SLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVGGIIVIDNVLWHG 234 (279)
Q Consensus 183 ~l~~~~~~~~~~~fDlI~id~~~~-------------------------~~~~~l~~~~~~Lk~gG~lv~dd~~~~g 234 (279)
..... .++||.|++|++.. ...+.++.+.++|||||.+++..+.+.-
T Consensus 300 l~~~~-----~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 300 LTEYV-----QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred hhhhh-----hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 43222 46899999997521 1245688889999999999998776543
No 37
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.57 E-value=7.8e-14 Score=131.17 Aligned_cols=124 Identities=22% Similarity=0.291 Sum_probs=99.7
Q ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (279)
Q Consensus 103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~ 182 (279)
+......++...+...++.+|||+|||+|..+..+++.+++.++|+++|+++++++.+++++++.|+.+ ++++++|+.+
T Consensus 234 ~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~ 312 (444)
T PRK14902 234 IQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARK 312 (444)
T ss_pred EEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCccc
Confidence 344455566666666778899999999999999999987546899999999999999999999999875 9999999976
Q ss_pred HHHHHHhCCCCCcEEEEEEeCCccc-------------------------hHHHHHHHHccCCCCcEEEEeCCCC
Q 023645 183 SLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIVIDNVLW 232 (279)
Q Consensus 183 ~l~~~~~~~~~~~fDlI~id~~~~~-------------------------~~~~l~~~~~~Lk~gG~lv~dd~~~ 232 (279)
....+ .++||+|++|++... ...+++.+.++|||||.++...+.+
T Consensus 313 ~~~~~-----~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 313 VHEKF-----AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred ccchh-----cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 54333 368999999975211 1356888899999999999876654
No 38
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.56 E-value=3.2e-14 Score=109.14 Aligned_cols=101 Identities=22% Similarity=0.402 Sum_probs=85.1
Q ss_pred CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (279)
Q Consensus 121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~ 200 (279)
.+|||+|||+|..+..+++.. ..+++++|+++..++.+++++...++.++++++++|+.+..+.. ..++||+|+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~----~~~~~D~Iv 75 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL----PDGKFDLIV 75 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC----TTT-EEEEE
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc----cCceeEEEE
Confidence 489999999999999999886 47999999999999999999999999888999999998765332 268999999
Q ss_pred EeCCcc-----------chHHHHHHHHccCCCCcEEEE
Q 023645 201 VDAEKR-----------MYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 201 id~~~~-----------~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
.+.+.. .+..+++.+.++|+|||++++
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 997622 246789999999999999886
No 39
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.55 E-value=4e-14 Score=121.30 Aligned_cols=116 Identities=19% Similarity=0.288 Sum_probs=98.9
Q ss_pred HHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHH
Q 023645 107 QAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA 186 (279)
Q Consensus 107 ~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~ 186 (279)
.+-+|...+......+|||+|||+|..++.+++..+ ..++++||+++++.+.|+++++.+++.++++++++|+.++.+.
T Consensus 32 DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~ 110 (248)
T COG4123 32 DAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA 110 (248)
T ss_pred HHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc
Confidence 455677777777788999999999999999999877 4899999999999999999999999999999999999887765
Q ss_pred HHhCCCCCcEEEEEEeCCc---------------------cchHHHHHHHHccCCCCcEEEE
Q 023645 187 LILNGEASSYDFAFVDAEK---------------------RMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 187 ~~~~~~~~~fDlI~id~~~---------------------~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
.. ..+||+|+++++. ....++++.+.++||+||.+.+
T Consensus 111 ~~----~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~ 168 (248)
T COG4123 111 LV----FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF 168 (248)
T ss_pred cc----ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence 52 3579999998751 1245677888899999999988
No 40
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.55 E-value=1.2e-13 Score=117.44 Aligned_cols=114 Identities=23% Similarity=0.334 Sum_probs=93.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (279)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~ 181 (279)
...+.....+..++...++.+|||+|||+|+.+..+++.. ++++++|.++++++.++++++..++.+ ++++++|+.
T Consensus 61 ~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~ 136 (212)
T PRK00312 61 ISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGW 136 (212)
T ss_pred eCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcc
Confidence 4567777777777777788999999999999999888764 489999999999999999999988865 999999986
Q ss_pred hHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645 182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 182 ~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
+.++. .++||+|+++...... .+.+.+.|+|||.+++.
T Consensus 137 ~~~~~------~~~fD~I~~~~~~~~~---~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 137 KGWPA------YAPFDRILVTAAAPEI---PRALLEQLKEGGILVAP 174 (212)
T ss_pred cCCCc------CCCcCEEEEccCchhh---hHHHHHhcCCCcEEEEE
Confidence 54321 3789999998865544 45678899999999985
No 41
>PLN02244 tocopherol O-methyltransferase
Probab=99.55 E-value=5.8e-14 Score=127.61 Aligned_cols=107 Identities=19% Similarity=0.175 Sum_probs=90.0
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
.++.+|||||||+|..+..+++.. +++|+|+|+++.+++.++++.+..++.++++++++|+.+.. . .+++||
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~-~-----~~~~FD 188 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP-F-----EDGQFD 188 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC-C-----CCCCcc
Confidence 456799999999999999999876 47999999999999999999998888778999999987531 1 157999
Q ss_pred EEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645 198 FAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW 232 (279)
Q Consensus 198 lI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~ 232 (279)
+|++... ..+...+++++.++|||||.+++.+...
T Consensus 189 ~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 189 LVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred EEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 9998543 3456789999999999999999976543
No 42
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.55 E-value=9.3e-14 Score=124.35 Aligned_cols=118 Identities=17% Similarity=0.240 Sum_probs=93.4
Q ss_pred CCHHHHHHHHHHHh-h-c--CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc
Q 023645 103 VSPDQAQLLAMLVQ-I-L--GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178 (279)
Q Consensus 103 ~~~~~~~~l~~l~~-~-~--~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g 178 (279)
..+++..++...+. . . ++.+|||+|||+|.+++.++...+ +.+|+++|+|+.+++.|+++++..++.++++++++
T Consensus 113 pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~ 191 (307)
T PRK11805 113 PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIES 191 (307)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEEC
Confidence 44556666555443 1 1 236899999999999999999876 68999999999999999999999998878999999
Q ss_pred ChhhHHHHHHhCCCCCcEEEEEEeCCc----------------------------cchHHHHHHHHccCCCCcEEEEe
Q 023645 179 LAADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 179 d~~~~l~~~~~~~~~~~fDlI~id~~~----------------------------~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
|+.+.++ .++||+|+++++. ..+..+++.+.+.|+|||.+++.
T Consensus 192 D~~~~l~-------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 192 DLFAALP-------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred chhhhCC-------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9865432 3579999998541 11345678888999999999985
No 43
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.54 E-value=3.8e-14 Score=119.66 Aligned_cols=122 Identities=18% Similarity=0.295 Sum_probs=96.8
Q ss_pred CCHHHHHHHHHHHhh---cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC
Q 023645 103 VSPDQAQLLAMLVQI---LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 179 (279)
Q Consensus 103 ~~~~~~~~l~~l~~~---~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd 179 (279)
+.+....++...+.. .++.+|||||||.|..+..||+. ++.|+|+|+++++++.|+....+.++. +++.+..
T Consensus 40 ~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~ 114 (243)
T COG2227 40 INPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQAT 114 (243)
T ss_pred eccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhh
Confidence 344444444444443 57889999999999999999986 589999999999999999999988875 7788777
Q ss_pred hhhHHHHHHhCCCCCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645 180 AADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK 235 (279)
Q Consensus 180 ~~~~l~~~~~~~~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~ 235 (279)
+.+.... .++||+|++-.. ..+...++..+.+++||||.+++..+..+-.
T Consensus 115 ~edl~~~------~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~k 167 (243)
T COG2227 115 VEDLASA------GGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLK 167 (243)
T ss_pred HHHHHhc------CCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHH
Confidence 7655432 379999998643 4556789999999999999999988875443
No 44
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.53 E-value=1.1e-13 Score=118.53 Aligned_cols=103 Identities=17% Similarity=0.247 Sum_probs=88.1
Q ss_pred CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (279)
Q Consensus 121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~ 200 (279)
++|||||||+|..+..+++..+ +++++++|+++++++.++++++..|+.++++++.+|+.+... .++||+|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~-------~~~fD~I~ 72 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF-------PDTYDLVF 72 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC-------CCCCCEee
Confidence 4799999999999999998876 679999999999999999999999998899999999854311 36899998
Q ss_pred EeCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645 201 VDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL 231 (279)
Q Consensus 201 id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~ 231 (279)
+... ..+...+++.+.++|+|||.+++.++.
T Consensus 73 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 73 GFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred hHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 6432 345678999999999999999998875
No 45
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.53 E-value=3.4e-14 Score=130.85 Aligned_cols=161 Identities=16% Similarity=0.206 Sum_probs=115.5
Q ss_pred cCCCCceeeeeccccccccccccCCCChhHHHHHHhccCChHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCE
Q 023645 43 KNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQR 122 (279)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 122 (279)
.|+......++..|||.....+.+.+++.+ .|.+....+.+.+.+.+..... .+...+...++.+
T Consensus 106 ~n~~~~~~~~i~~hYd~~n~~y~l~ld~~m-~ys~g~~~~~~~L~~Aq~~k~~--------------~l~~~l~l~~g~r 170 (383)
T PRK11705 106 LQSKKRAWIVGKEHYDLGNDLFEAMLDPRM-QYSCGYWKDADTLEEAQEAKLD--------------LICRKLQLKPGMR 170 (383)
T ss_pred cCChhhHHHhhhhhcCCcHHHHHHhcCCCC-cccccccCCCCCHHHHHHHHHH--------------HHHHHhCCCCCCE
Confidence 455666788888999877666666676654 5555444333334443333221 1223334557789
Q ss_pred EEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEe
Q 023645 123 CIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVD 202 (279)
Q Consensus 123 VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id 202 (279)
|||||||+|..+..+++.. +++|+++|+|+++++.|+++.+ ++ .+++..+|..+. +++||.|++.
T Consensus 171 VLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l---------~~~fD~Ivs~ 235 (383)
T PRK11705 171 VLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---------NGQFDRIVSV 235 (383)
T ss_pred EEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---------CCCCCEEEEe
Confidence 9999999999999999875 4799999999999999999874 33 378888887532 4689999865
Q ss_pred CC-----ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645 203 AE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWH 233 (279)
Q Consensus 203 ~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~ 233 (279)
.. ...+..+++.+.++|||||.+++..+..+
T Consensus 236 ~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 236 GMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred CchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 43 34467899999999999999999876543
No 46
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.53 E-value=2.5e-13 Score=127.75 Aligned_cols=123 Identities=18% Similarity=0.236 Sum_probs=97.7
Q ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (279)
Q Consensus 103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~ 182 (279)
+......+...++...++.+|||+|||+|..+..+++.++..++|+++|+++++++.++++++..|+. +++++++|+.+
T Consensus 234 vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~ 312 (445)
T PRK14904 234 VQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARS 312 (445)
T ss_pred EeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccc
Confidence 33344445555556667789999999999999999988765679999999999999999999999986 59999999876
Q ss_pred HHHHHHhCCCCCcEEEEEEeCCcc-------------------------chHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645 183 SLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVGGIIVIDNVLWH 233 (279)
Q Consensus 183 ~l~~~~~~~~~~~fDlI~id~~~~-------------------------~~~~~l~~~~~~Lk~gG~lv~dd~~~~ 233 (279)
..+ ..+||.|++|++.. .....+..+.++|+|||.+++..+...
T Consensus 313 ~~~-------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 313 FSP-------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred ccc-------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 432 46899999986421 123478888999999999999876554
No 47
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.53 E-value=3.1e-13 Score=118.64 Aligned_cols=121 Identities=16% Similarity=0.224 Sum_probs=95.2
Q ss_pred HHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHH
Q 023645 107 QAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA 186 (279)
Q Consensus 107 ~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~ 186 (279)
...+...++...++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.+++++++.|+.+ ++++++|+.....
T Consensus 59 ~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~- 136 (264)
T TIGR00446 59 SSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNFDGRVFGA- 136 (264)
T ss_pred HHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecCCHHHhhh-
Confidence 33344445555677899999999999999999988756899999999999999999999999864 9999999865422
Q ss_pred HHhCCCCCcEEEEEEeCCcc-------------------------chHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645 187 LILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVGGIIVIDNVLWHG 234 (279)
Q Consensus 187 ~~~~~~~~~fDlI~id~~~~-------------------------~~~~~l~~~~~~Lk~gG~lv~dd~~~~g 234 (279)
. .+.||.|++|++.. ...+.++.+.++|||||+|+...+....
T Consensus 137 ~-----~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 137 A-----VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred h-----ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 1 35699999997521 1235788888999999999987665433
No 48
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.53 E-value=1.4e-13 Score=121.32 Aligned_cols=114 Identities=16% Similarity=0.298 Sum_probs=93.0
Q ss_pred HhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (279)
Q Consensus 115 ~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~ 194 (279)
....++.+|||||||+|..+..+++..+..++|+++|+++++++.|+++....+.. +++++.+|+.+. +. .++
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l-~~-----~~~ 145 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEAL-PV-----ADN 145 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhC-CC-----CCC
Confidence 34567889999999999999888877665679999999999999999999888875 689999998643 11 146
Q ss_pred cEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645 195 SYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK 235 (279)
Q Consensus 195 ~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~ 235 (279)
.||+|+++.. ..+....++++.++|||||.+++.++...+.
T Consensus 146 ~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~ 189 (272)
T PRK11873 146 SVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGE 189 (272)
T ss_pred ceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCC
Confidence 8999998754 3355678999999999999999988765543
No 49
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.53 E-value=8.2e-14 Score=117.14 Aligned_cols=100 Identities=13% Similarity=0.198 Sum_probs=81.8
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
..++.+|||+|||+|..+.++++. +.+|+++|+|+++++.+++..+..++. ++++..+|+.+.. + .++|
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~--~-----~~~f 96 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLT--F-----DGEY 96 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCC--c-----CCCc
Confidence 446689999999999999999975 469999999999999999999888875 4888888876431 1 3679
Q ss_pred EEEEEeCC-----ccchHHHHHHHHccCCCCcEEEE
Q 023645 197 DFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 197 DlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
|+|++... ......+++.+.++|+|||++++
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 99997644 23467889999999999998544
No 50
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.53 E-value=3.7e-13 Score=125.93 Aligned_cols=122 Identities=23% Similarity=0.307 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHH
Q 023645 105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 184 (279)
Q Consensus 105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l 184 (279)
.....++..++...++.+|||+|||+|..+..+++..+ +++|+++|+++.+++.++++++..|+. ++++++|+.+..
T Consensus 230 d~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~ 306 (427)
T PRK10901 230 DAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPA 306 (427)
T ss_pred CHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccch
Confidence 34444555566667788999999999999999999876 479999999999999999999998874 689999987542
Q ss_pred HHHHhCCCCCcEEEEEEeCCccc-------------------------hHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645 185 KALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIVIDNVLWH 233 (279)
Q Consensus 185 ~~~~~~~~~~~fDlI~id~~~~~-------------------------~~~~l~~~~~~Lk~gG~lv~dd~~~~ 233 (279)
... ..++||.|++|++... ....++.+.++|||||.+++..+.+.
T Consensus 307 ~~~----~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 307 QWW----DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred hhc----ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 211 1367999999875211 23578888999999999998776443
No 51
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.52 E-value=8.1e-14 Score=125.14 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=86.0
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl 198 (279)
++.+|||||||+|..+..+++. +++|+|||+++++++.|+++....+...+++++++++.+.. .. +++||+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~-~~-----~~~FD~ 201 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA-DE-----GRKFDA 201 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh-hc-----cCCCCE
Confidence 4569999999999999988863 57999999999999999988776555567999999986542 21 578999
Q ss_pred EEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645 199 AFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL 231 (279)
Q Consensus 199 I~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~ 231 (279)
|++... ..+...+++.+.++|||||.+++..+.
T Consensus 202 Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 202 VLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred EEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 998653 445778999999999999999998654
No 52
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.52 E-value=1.9e-13 Score=114.68 Aligned_cols=105 Identities=16% Similarity=0.246 Sum_probs=87.1
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl 198 (279)
...+|||||||+|.++..++...| +.+++++|+++++++.|+++....++. +++++++|+.+.++.... ++.+|.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~---~~~~d~ 90 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFP---DGSLSK 90 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCC---CCceeE
Confidence 455899999999999999999887 789999999999999999999988886 699999999876543321 358999
Q ss_pred EEEeCCcc-----------chHHHHHHHHccCCCCcEEEEe
Q 023645 199 AFVDAEKR-----------MYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 199 I~id~~~~-----------~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
|+++.+.. ....+++.+.+.|||||.|++.
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 99875311 1257899999999999999873
No 53
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.52 E-value=3.4e-13 Score=126.19 Aligned_cols=124 Identities=19% Similarity=0.227 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHH
Q 023645 106 DQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 185 (279)
Q Consensus 106 ~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~ 185 (279)
....++...+...++.+|||+|||+|+.+..+++.++ .++|+++|+++++++.+++++++.|+..++++..+|......
T Consensus 225 ~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~ 303 (426)
T TIGR00563 225 ASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ 303 (426)
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc
Confidence 4455566666667788999999999999999999887 789999999999999999999999987445557777643211
Q ss_pred HHHhCCCCCcEEEEEEeCCccc-------------------------hHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645 186 ALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIVIDNVLWHG 234 (279)
Q Consensus 186 ~~~~~~~~~~fDlI~id~~~~~-------------------------~~~~l~~~~~~Lk~gG~lv~dd~~~~g 234 (279)
.. ..++||.|++|++... ....++.+.++|||||.+++..+.+..
T Consensus 304 ~~----~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 304 WA----ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred cc----cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 00 1468999999864111 246788889999999999998776644
No 54
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.52 E-value=1.7e-13 Score=119.28 Aligned_cols=106 Identities=12% Similarity=0.215 Sum_probs=86.9
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
.++.+|||||||+|..+..+++.+ .++++++++|+|+.+++.|+++++..+...+++++++|+.+.. ...+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~ 126 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA--------IENA 126 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC--------CCCC
Confidence 356799999999999999988854 2378999999999999999999998888778999999986542 2458
Q ss_pred EEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645 197 DFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL 231 (279)
Q Consensus 197 DlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd~~ 231 (279)
|+|++... ......+++++.+.|+|||.+++.+..
T Consensus 127 D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 127 SMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred CEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 99887533 223467899999999999999997754
No 55
>PRK00811 spermidine synthase; Provisional
Probab=99.51 E-value=7e-13 Score=117.49 Aligned_cols=105 Identities=20% Similarity=0.290 Sum_probs=85.9
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhC--C--CCcEEEEEcChhhHHHHHHhCCCC
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V--SHKVKIKHGLAADSLKALILNGEA 193 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~--~~~v~~~~gd~~~~l~~~~~~~~~ 193 (279)
..+++||+||||.|..+..+++..+ ..+|+++|+++++++.|++++...+ . ..+++++.+|+.++++.. .
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~-----~ 148 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET-----E 148 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC-----C
Confidence 4578999999999999999987532 5699999999999999999987532 2 467999999999877652 5
Q ss_pred CcEEEEEEeCCcc-------chHHHHHHHHccCCCCcEEEEe
Q 023645 194 SSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 194 ~~fDlI~id~~~~-------~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
++||+|++|.... ...++++.+.+.|+|||++++.
T Consensus 149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 149 NSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred CcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 7899999986311 1357889999999999999974
No 56
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.51 E-value=1.9e-13 Score=124.98 Aligned_cols=102 Identities=11% Similarity=0.138 Sum_probs=84.4
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCC--CcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS--HKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~--~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
...+|||+|||+|.+++.+++..| ..+|+++|.|+.+++.|+++++.++.. .+++++.+|..+.++ .++|
T Consensus 228 ~~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~-------~~~f 299 (378)
T PRK15001 228 LEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE-------PFRF 299 (378)
T ss_pred cCCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC-------CCCE
Confidence 346999999999999999999887 789999999999999999999887653 368999988865332 4589
Q ss_pred EEEEEeCCcc--------chHHHHHHHHccCCCCcEEEEe
Q 023645 197 DFAFVDAEKR--------MYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 197 DlI~id~~~~--------~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
|+|+++++.+ ....++..+.+.|+|||.+++-
T Consensus 300 DlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 300 NAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred EEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 9999987632 2346788889999999998885
No 57
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.51 E-value=3.6e-13 Score=116.51 Aligned_cols=106 Identities=8% Similarity=0.085 Sum_probs=87.3
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
++.+|||||||+|..+..+++.++ ++++++++|+++++++.|+++++..+...+++++++|+.+.. ...+|
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~d 124 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--------IKNAS 124 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--------CCCCC
Confidence 567999999999999999998753 378999999999999999999987776667999999997542 24588
Q ss_pred EEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645 198 FAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLW 232 (279)
Q Consensus 198 lI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd~~~ 232 (279)
+|++... ..+...+++.+.+.|+|||.+++.+..+
T Consensus 125 ~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 125 MVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred EEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 8877543 2235678999999999999999988654
No 58
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=99.51 E-value=2.3e-14 Score=108.39 Aligned_cols=102 Identities=30% Similarity=0.489 Sum_probs=52.3
Q ss_pred EEEcCccCHHHHHHHHHCCCCC--EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEE
Q 023645 124 IEVGVYTGYSSLAIALVLPESG--CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201 (279)
Q Consensus 124 LEiG~G~G~~t~~la~~~~~~~--~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~i 201 (279)
||||++.|.++.++++.+++.+ +++++|..+. .+.+++.+++.++.++++++.++..+.++.+. .++||+|++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~----~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP----DGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH----H--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC----CCCEEEEEE
Confidence 7999999999999999887554 7999999986 44556666667788889999999999888773 379999999
Q ss_pred eCCc--cchHHHHHHHHccCCCCcEEEEeCC
Q 023645 202 DAEK--RMYQEYFELLLQLIRVGGIIVIDNV 230 (279)
Q Consensus 202 d~~~--~~~~~~l~~~~~~Lk~gG~lv~dd~ 230 (279)
|+.+ +.....++.+.+.|+|||+|++||+
T Consensus 76 Dg~H~~~~~~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 76 DGDHSYEAVLRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp ES---HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 9874 5677889999999999999999985
No 59
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.50 E-value=1.2e-12 Score=114.01 Aligned_cols=109 Identities=22% Similarity=0.321 Sum_probs=84.2
Q ss_pred HHHHHHHHHh-hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHH
Q 023645 107 QAQLLAMLVQ-ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 185 (279)
Q Consensus 107 ~~~~l~~l~~-~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~ 185 (279)
....+..+.. ..++.+|||+|||+|..++.+++. + ..+|+++|+++.+++.|+++++.+++.+++.+..+
T Consensus 106 t~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~------- 176 (250)
T PRK00517 106 TRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG------- 176 (250)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC-------
Confidence 3334444433 246789999999999999887764 3 24799999999999999999998887554544322
Q ss_pred HHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645 186 ALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 231 (279)
Q Consensus 186 ~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~ 231 (279)
+.+||+|+++........+++.+.+.|+|||.+++.++.
T Consensus 177 -------~~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 177 -------DLKADVIVANILANPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred -------CCCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 227999999877666778889999999999999997664
No 60
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.50 E-value=2.1e-13 Score=114.53 Aligned_cols=100 Identities=18% Similarity=0.247 Sum_probs=79.6
Q ss_pred hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (279)
Q Consensus 116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~ 195 (279)
...++.+|||+|||+|..+.++++. +.+|+++|+++.+++.+++..+..++. +++..+|.... + + .++
T Consensus 27 ~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~-~-~-----~~~ 94 (195)
T TIGR00477 27 KTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAA-A-L-----NED 94 (195)
T ss_pred ccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhc-c-c-----cCC
Confidence 3445779999999999999999974 579999999999999999988877774 77777776432 1 1 367
Q ss_pred EEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEE
Q 023645 196 YDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 196 fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
||+|++... ......+++.+.++|+|||++++
T Consensus 95 fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 95 YDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 999987643 23456889999999999998555
No 61
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.50 E-value=3.8e-13 Score=119.39 Aligned_cols=120 Identities=18% Similarity=0.313 Sum_probs=93.5
Q ss_pred CCHHHHHHHHHHHhh---cCC-CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc
Q 023645 103 VSPDQAQLLAMLVQI---LGA-QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178 (279)
Q Consensus 103 ~~~~~~~~l~~l~~~---~~~-~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g 178 (279)
..+++..++...... ..+ .+|||+|||+|..++.++...+ +.+|+++|+++++++.|+++.+..++.++++++++
T Consensus 94 Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~ 172 (284)
T TIGR00536 94 PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQS 172 (284)
T ss_pred CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 344555555554432 223 6899999999999999999876 67999999999999999999999998777999999
Q ss_pred ChhhHHHHHHhCCCCCcEEEEEEeCCc----------------------------cchHHHHHHHHccCCCCcEEEEeCC
Q 023645 179 LAADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLLQLIRVGGIIVIDNV 230 (279)
Q Consensus 179 d~~~~l~~~~~~~~~~~fDlI~id~~~----------------------------~~~~~~l~~~~~~Lk~gG~lv~dd~ 230 (279)
|..+.++ ..+||+|+++++. ..+..+++.+.++|+|||++++.--
T Consensus 173 d~~~~~~-------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 173 NLFEPLA-------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred chhccCc-------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 9875432 3489999987531 1245677788899999999998643
No 62
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.50 E-value=1.3e-13 Score=103.25 Aligned_cols=93 Identities=23% Similarity=0.336 Sum_probs=74.5
Q ss_pred EEEEcCccCHHHHHHHHHCCC--CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645 123 CIEVGVYTGYSSLAIALVLPE--SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (279)
Q Consensus 123 VLEiG~G~G~~t~~la~~~~~--~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~ 200 (279)
|||+|||+|..+..+++.++. ..+++++|+++++++.+++.....+. +++++++|+.+. +.. +++||+|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l-~~~-----~~~~D~v~ 72 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDL-PFS-----DGKFDLVV 72 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCH-HHH-----SSSEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHC-ccc-----CCCeeEEE
Confidence 799999999999999998732 37999999999999999999988666 589999999774 333 67999999
Q ss_pred EeCC------ccchHHHHHHHHccCCCCc
Q 023645 201 VDAE------KRMYQEYFELLLQLIRVGG 223 (279)
Q Consensus 201 id~~------~~~~~~~l~~~~~~Lk~gG 223 (279)
+... .+....+++.+.++|+|||
T Consensus 73 ~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 73 CSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp E-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred EcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 9432 3456788999999999998
No 63
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.49 E-value=1.7e-13 Score=119.65 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=80.2
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
..++.+|||||||+|..+..+++..| +++|+|+|+++.+++.|++. +++++++|+.+..+ .++|
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~-------~~~f 90 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKP-------KPDT 90 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCC-------CCCc
Confidence 34678999999999999999999876 68999999999999998752 37889999865421 4789
Q ss_pred EEEEEeCC---ccchHHHHHHHHccCCCCcEEEEe
Q 023645 197 DFAFVDAE---KRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 197 DlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
|+|++... ..+....++.+.+.|||||.+++.
T Consensus 91 D~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 91 DVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred eEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 99998764 345678899999999999999985
No 64
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.49 E-value=9.7e-13 Score=116.95 Aligned_cols=104 Identities=21% Similarity=0.338 Sum_probs=86.9
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
.++++|||+|||+|..+..+++. + ..+|+++|+++.+++.|++++..+++.+++.+..++.... . .++||
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~---~-----~~~fD 227 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP---I-----EGKAD 227 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc---c-----CCCce
Confidence 46789999999999999888764 3 3699999999999999999999988887788877763221 1 46899
Q ss_pred EEEEeCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645 198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 231 (279)
Q Consensus 198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~ 231 (279)
+|+++........++..+.+.|+|||.+++..+.
T Consensus 228 lVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 228 VIVANILAEVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred EEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 9999887666778899999999999999997764
No 65
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.49 E-value=1.1e-12 Score=108.62 Aligned_cols=109 Identities=12% Similarity=0.232 Sum_probs=86.5
Q ss_pred HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHH
Q 023645 109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188 (279)
Q Consensus 109 ~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~ 188 (279)
.++.......++.+|||+|||+|..+..++... .+|+++|+++++++.++++++..+. +++++.+|..+..
T Consensus 9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~---- 79 (179)
T TIGR00537 9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV---- 79 (179)
T ss_pred HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc----
Confidence 445555556677899999999999999999864 3899999999999999999987775 4889999986532
Q ss_pred hCCCCCcEEEEEEeCCcc------------------------chHHHHHHHHccCCCCcEEEEeCC
Q 023645 189 LNGEASSYDFAFVDAEKR------------------------MYQEYFELLLQLIRVGGIIVIDNV 230 (279)
Q Consensus 189 ~~~~~~~fDlI~id~~~~------------------------~~~~~l~~~~~~Lk~gG~lv~dd~ 230 (279)
.++||+|+++.+.. .+..+++.+.++|+|||.+++-..
T Consensus 80 ----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 80 ----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred ----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 35899999885421 135678888999999999888543
No 66
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.49 E-value=1.1e-12 Score=121.10 Aligned_cols=111 Identities=19% Similarity=0.291 Sum_probs=89.8
Q ss_pred hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCC-CcEEEEEcChhhHHHHHHhCCCCC
Q 023645 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEAS 194 (279)
Q Consensus 116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~l~~~~~~~~~~ 194 (279)
...++++|||+|||+|.+++.++.. ...+|+++|+++.+++.|+++++.+++. ++++++++|+.+.+..+... .+
T Consensus 217 ~~~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~--~~ 292 (396)
T PRK15128 217 RYVENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR--GE 292 (396)
T ss_pred HhcCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhc--CC
Confidence 3456789999999999998876643 2459999999999999999999999986 47999999999887665322 35
Q ss_pred cEEEEEEeCCc------------cchHHHHHHHHccCCCCcEEEEeCC
Q 023645 195 SYDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDNV 230 (279)
Q Consensus 195 ~fDlI~id~~~------------~~~~~~l~~~~~~Lk~gG~lv~dd~ 230 (279)
+||+||+|++. ..+..++..+.++|+|||+|+.-.+
T Consensus 293 ~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 293 KFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 89999999772 2466667778899999999997543
No 67
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.49 E-value=1.5e-12 Score=109.30 Aligned_cols=114 Identities=16% Similarity=0.185 Sum_probs=86.4
Q ss_pred HHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHH
Q 023645 108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL 187 (279)
Q Consensus 108 ~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~ 187 (279)
..++..+.....+.+|||+|||+|.+++.++... ..+|+++|.++++++.++++++.++.. +++++++|+.+.++..
T Consensus 42 e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~ 118 (199)
T PRK10909 42 ETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQP 118 (199)
T ss_pred HHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhc
Confidence 3344444444556799999999999998755443 369999999999999999999999875 5999999998766432
Q ss_pred HhCCCCCcEEEEEEeCC-ccc-hHHHHHHHH--ccCCCCcEEEEeC
Q 023645 188 ILNGEASSYDFAFVDAE-KRM-YQEYFELLL--QLIRVGGIIVIDN 229 (279)
Q Consensus 188 ~~~~~~~~fDlI~id~~-~~~-~~~~l~~~~--~~Lk~gG~lv~dd 229 (279)
..+||+||+|++ ... ....++.+. .+|+|+|++++..
T Consensus 119 -----~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 119 -----GTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred -----CCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 357999999998 333 444455554 3478999999863
No 68
>PRK01581 speE spermidine synthase; Validated
Probab=99.48 E-value=1.2e-12 Score=117.90 Aligned_cols=106 Identities=15% Similarity=0.226 Sum_probs=84.8
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHH-----HHhCC-CCcEEEEEcChhhHHHHHHhC
Q 023645 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYY-----ERAGV-SHKVKIKHGLAADSLKALILN 190 (279)
Q Consensus 117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~-----~~~g~-~~~v~~~~gd~~~~l~~~~~~ 190 (279)
...+++||+||||.|..+..+++. ++..+|+++|+++++++.|++.. ....+ .++++++.+|+.++++..
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~--- 223 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP--- 223 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc---
Confidence 457889999999999988888875 33579999999999999999732 11222 468999999999888654
Q ss_pred CCCCcEEEEEEeCCcc--------chHHHHHHHHccCCCCcEEEEe
Q 023645 191 GEASSYDFAFVDAEKR--------MYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 191 ~~~~~fDlI~id~~~~--------~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
.++||+||+|.... ...++++.+.+.|+|||++++.
T Consensus 224 --~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 224 --SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred --CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 57899999996421 1256899999999999999886
No 69
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.48 E-value=2.5e-13 Score=118.77 Aligned_cols=99 Identities=16% Similarity=0.249 Sum_probs=82.4
Q ss_pred hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (279)
Q Consensus 116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~ 195 (279)
...++.+|||||||+|..+..+++..+ +++|+++|+++.+++.|++++ .+++++.+|+.+..+ ..+
T Consensus 28 ~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~-------~~~ 93 (258)
T PRK01683 28 PLENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP-------PQA 93 (258)
T ss_pred CCcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC-------CCC
Confidence 345678999999999999999998876 689999999999999998764 247899999865422 468
Q ss_pred EEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEe
Q 023645 196 YDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 196 fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
||+|++... ..+...+++.+.+.|+|||.+++.
T Consensus 94 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 94 LDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred ccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 999998765 345678999999999999999985
No 70
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=9.3e-13 Score=115.76 Aligned_cols=119 Identities=19% Similarity=0.277 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhh-cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH
Q 023645 105 PDQAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 183 (279)
Q Consensus 105 ~~~~~~l~~l~~~-~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~ 183 (279)
|.+...+..+-.. .++++|||+|||+|..++..++.. ..+++|+|++|.+++.|++|.+.+++...++....+..+.
T Consensus 147 pTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLG--A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~ 224 (300)
T COG2264 147 PTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLG--AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV 224 (300)
T ss_pred hhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcC--CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh
Confidence 3444444444432 478899999999999999988753 3689999999999999999999998875333333333322
Q ss_pred HHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645 184 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLW 232 (279)
Q Consensus 184 l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~ 232 (279)
.. .++||+|+.+--.+-...+...+.+.|+|||.+++..++-
T Consensus 225 ~~-------~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl~ 266 (300)
T COG2264 225 PE-------NGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGILE 266 (300)
T ss_pred cc-------cCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeehH
Confidence 21 4699999998766666788889999999999999987653
No 71
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.48 E-value=6.4e-14 Score=102.74 Aligned_cols=92 Identities=22% Similarity=0.313 Sum_probs=74.3
Q ss_pred EEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeC
Q 023645 124 IEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA 203 (279)
Q Consensus 124 LEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~ 203 (279)
||+|||+|..+..+++. + ..+|+++|+++++++.+++.... ..+.++++|+.+. +.. +++||+|++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~~~~~~~~----~~~~~~~~d~~~l-~~~-----~~sfD~v~~~~ 68 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G-GASVTGIDISEEMLEQARKRLKN----EGVSFRQGDAEDL-PFP-----DNSFDVVFSNS 68 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T-TCEEEEEES-HHHHHHHHHHTTT----STEEEEESBTTSS-SS------TT-EEEEEEES
T ss_pred CEecCcCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHhcccc----cCchheeehHHhC-ccc-----ccccccccccc
Confidence 89999999999999987 3 68999999999999999997763 3466999998765 221 68999999875
Q ss_pred C---ccchHHHHHHHHccCCCCcEEEE
Q 023645 204 E---KRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 204 ~---~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
. .++...+++++.+.|||||.+++
T Consensus 69 ~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 69 VLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 4 35678899999999999999986
No 72
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.47 E-value=1.3e-12 Score=119.45 Aligned_cols=118 Identities=23% Similarity=0.319 Sum_probs=99.5
Q ss_pred HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCC-CcEEEEEcChhhHHHHHHhC
Q 023645 113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILN 190 (279)
Q Consensus 113 ~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~l~~~~~~ 190 (279)
.+.....+++||++.|+||.+++..+.. ++ +||+||.|...++.|++|++.+|+. .++.++++|+++++......
T Consensus 211 ~l~~~~~GkrvLNlFsYTGgfSv~Aa~g---GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~ 287 (393)
T COG1092 211 ALGELAAGKRVLNLFSYTGGFSVHAALG---GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERR 287 (393)
T ss_pred HHhhhccCCeEEEecccCcHHHHHHHhc---CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhc
Confidence 3444556899999999999999998875 44 9999999999999999999999984 56899999999999887543
Q ss_pred CCCCcEEEEEEeCC------------ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645 191 GEASSYDFAFVDAE------------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK 235 (279)
Q Consensus 191 ~~~~~fDlI~id~~------------~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~ 235 (279)
..+||+|++|++ ..+|...+..+.++|+|||++++-++...-.
T Consensus 288 --g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~ 342 (393)
T COG1092 288 --GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS 342 (393)
T ss_pred --CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC
Confidence 359999999986 3457778888899999999999987765544
No 73
>PRK04266 fibrillarin; Provisional
Probab=99.47 E-value=2.2e-12 Score=110.51 Aligned_cols=109 Identities=12% Similarity=0.151 Sum_probs=84.3
Q ss_pred HhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHH--HHHHhCCC
Q 023645 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILNGE 192 (279)
Q Consensus 115 ~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l--~~~~~~~~ 192 (279)
+...++.+|||+|||+|..+..+++..+ .++|+++|+++++++.+.+..+.. .++.++.+|+.+.. ..+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l----- 138 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHV----- 138 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhc-----
Confidence 4556778999999999999999999886 689999999999998877766542 35899999986421 112
Q ss_pred CCcEEEEEEeCCcc-chHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645 193 ASSYDFAFVDAEKR-MYQEYFELLLQLIRVGGIIVIDNVLWH 233 (279)
Q Consensus 193 ~~~fDlI~id~~~~-~~~~~l~~~~~~Lk~gG~lv~dd~~~~ 233 (279)
.++||+|+++.... .....++.+.+.|||||.+++. +.|+
T Consensus 139 ~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~-v~~~ 179 (226)
T PRK04266 139 VEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA-IKAR 179 (226)
T ss_pred cccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE-Eecc
Confidence 35699999876533 2234588999999999999996 5453
No 74
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.46 E-value=6.9e-13 Score=119.55 Aligned_cols=111 Identities=14% Similarity=0.156 Sum_probs=85.3
Q ss_pred hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (279)
Q Consensus 116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~ 195 (279)
....+++|||||||+|+.+..++...+ ..|+|+|+++.++..++......+...++.++.+++.+... .++
T Consensus 119 ~~l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-------~~~ 189 (322)
T PRK15068 119 SPLKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-------LKA 189 (322)
T ss_pred CCCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-------cCC
Confidence 335678999999999999999998743 47999999999887655443333334569999998865421 478
Q ss_pred EEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645 196 YDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK 235 (279)
Q Consensus 196 fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~ 235 (279)
||+|++.+. ..+....++.+.+.|+|||.++++.....+.
T Consensus 190 FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~ 232 (322)
T PRK15068 190 FDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGD 232 (322)
T ss_pred cCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCC
Confidence 999998654 3457789999999999999999987665543
No 75
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.46 E-value=1.1e-13 Score=114.40 Aligned_cols=102 Identities=16% Similarity=0.211 Sum_probs=87.0
Q ss_pred HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645 114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (279)
Q Consensus 114 l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~ 193 (279)
.+....+.+|.|+|||+|.+|..+++++| ++.|+|+|.|++|++.|++... +++|..+|..++-+ +
T Consensus 25 ~Vp~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rlp------~~~f~~aDl~~w~p-------~ 90 (257)
T COG4106 25 RVPLERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRLP------DATFEEADLRTWKP-------E 90 (257)
T ss_pred hCCccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhCC------CCceecccHhhcCC-------C
Confidence 34456778999999999999999999999 8999999999999999977543 48999999987644 5
Q ss_pred CcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeC
Q 023645 194 SSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDN 229 (279)
Q Consensus 194 ~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd 229 (279)
.++|++|.++. ..+....|..+...|.|||+|.++-
T Consensus 91 ~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 91 QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEEC
Confidence 78999999875 5566788999999999999999863
No 76
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.45 E-value=1.5e-12 Score=115.26 Aligned_cols=146 Identities=18% Similarity=0.295 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhh-cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH
Q 023645 105 PDQAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 183 (279)
Q Consensus 105 ~~~~~~l~~l~~~-~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~ 183 (279)
+.+...+..+... .++++|||+|||+|..++..++. + ..+|+++|++|.+++.|++|++.+++.+++.+. ...+.
T Consensus 146 ~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl-G-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~ 221 (295)
T PF06325_consen 146 PTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL-G-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL 221 (295)
T ss_dssp HHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT-T-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc
Confidence 4455555555554 45689999999999999988875 3 358999999999999999999999999877663 11111
Q ss_pred HHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeE
Q 023645 184 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVS 263 (279)
Q Consensus 184 l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 263 (279)
. .++||+|+.+-...-.......+.++|+|||.+++..++-.. ..++.+.+. . ++.
T Consensus 222 ~--------~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~--------------~~~v~~a~~-~-g~~ 277 (295)
T PF06325_consen 222 V--------EGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILEEQ--------------EDEVIEAYK-Q-GFE 277 (295)
T ss_dssp C--------CS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGGG--------------HHHHHHHHH-T-TEE
T ss_pred c--------cccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccHHH--------------HHHHHHHHH-C-CCE
Confidence 1 489999999988777778888889999999999998776432 245555553 4 777
Q ss_pred EEE-eecCCceEEEEE
Q 023645 264 ISM-VPIGDGMTICQK 278 (279)
Q Consensus 264 ~~~-lp~~~G~~i~~~ 278 (279)
... ..-++...+.-|
T Consensus 278 ~~~~~~~~~W~~l~~~ 293 (295)
T PF06325_consen 278 LVEEREEGEWVALVFK 293 (295)
T ss_dssp EEEEEEETTEEEEEEE
T ss_pred EEEEEEECCEEEEEEE
Confidence 654 345666666554
No 77
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.45 E-value=7.2e-13 Score=116.27 Aligned_cols=108 Identities=11% Similarity=0.185 Sum_probs=86.2
Q ss_pred HhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (279)
Q Consensus 115 ~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~ 194 (279)
+...++.+|||||||+|..+..++... +++|+++|+++.+++.|+++... .+++.++++|+.+.. + .++
T Consensus 48 l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~--~----~~~ 116 (263)
T PTZ00098 48 IELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKD--F----PEN 116 (263)
T ss_pred CCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCC--C----CCC
Confidence 355677899999999999999998764 47999999999999999987653 356999999986421 1 157
Q ss_pred cEEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645 195 SYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWH 233 (279)
Q Consensus 195 ~fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~ 233 (279)
+||+|++... ..+...+++.+.++|||||.+++.+....
T Consensus 117 ~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~ 160 (263)
T PTZ00098 117 TFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCAD 160 (263)
T ss_pred CeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 8999998421 23667899999999999999999887543
No 78
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.45 E-value=1.3e-12 Score=117.40 Aligned_cols=115 Identities=24% Similarity=0.359 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH
Q 023645 104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 183 (279)
Q Consensus 104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~ 183 (279)
.|.....+...+...++.+|||||||+|+.+..+++..+..++|+++|.++++++.|+++++..|.. ++.++++|+.+.
T Consensus 65 ~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~ 143 (322)
T PRK13943 65 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYG 143 (322)
T ss_pred cHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhc
Confidence 4444444444445567789999999999999999998764578999999999999999999988885 599999998765
Q ss_pred HHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645 184 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 184 l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
++. .++||+|+++...... .+.+.+.|+|||.+++.
T Consensus 144 ~~~------~~~fD~Ii~~~g~~~i---p~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 144 VPE------FAPYDVIFVTVGVDEV---PETWFTQLKEGGRVIVP 179 (322)
T ss_pred ccc------cCCccEEEECCchHHh---HHHHHHhcCCCCEEEEE
Confidence 432 3679999998764443 34567889999998874
No 79
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.44 E-value=5e-12 Score=111.38 Aligned_cols=105 Identities=17% Similarity=0.248 Sum_probs=85.4
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhC--C-CCcEEEEEcChhhHHHHHHhCCCCC
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V-SHKVKIKHGLAADSLKALILNGEAS 194 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~-~~~v~~~~gd~~~~l~~~~~~~~~~ 194 (279)
..+++||+||||+|..+..+++..+ ..+++++|+++++++.+++++...+ . ..+++++.+|+.+.+... .+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~-----~~ 144 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT-----EN 144 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC-----CC
Confidence 4567999999999999988887643 4689999999999999999886542 1 356899999998877654 57
Q ss_pred cEEEEEEeCCcc-----c--hHHHHHHHHccCCCCcEEEEe
Q 023645 195 SYDFAFVDAEKR-----M--YQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 195 ~fDlI~id~~~~-----~--~~~~l~~~~~~Lk~gG~lv~d 228 (279)
+||+|++|.... . ..++++.+.+.|+|||++++.
T Consensus 145 ~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 145 TFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 999999987511 1 457889999999999999985
No 80
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.44 E-value=1.3e-12 Score=117.18 Aligned_cols=114 Identities=14% Similarity=0.124 Sum_probs=92.7
Q ss_pred HHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhC
Q 023645 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 190 (279)
Q Consensus 111 l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~ 190 (279)
+.......+..+|||||||+|..+..+++..| +.+++++|. |.+++.++++++..|+.++++++.+|+.+..
T Consensus 141 l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~------ 212 (306)
T TIGR02716 141 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES------ 212 (306)
T ss_pred HHHHcCCCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC------
Confidence 33344455678999999999999999999987 689999998 7899999999999999889999999987421
Q ss_pred CCCCcEEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645 191 GEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234 (279)
Q Consensus 191 ~~~~~fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g 234 (279)
...+|+|++... .+.....++++.+.|+|||.+++.|+.++.
T Consensus 213 --~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 259 (306)
T TIGR02716 213 --YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD 259 (306)
T ss_pred --CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence 134699876542 223456899999999999999999987754
No 81
>PRK08317 hypothetical protein; Provisional
Probab=99.44 E-value=3.3e-12 Score=109.57 Aligned_cols=115 Identities=21% Similarity=0.289 Sum_probs=90.8
Q ss_pred HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645 113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (279)
Q Consensus 113 ~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~ 192 (279)
..+...++.+|||+|||+|.++..++..+++.++++++|+++.+++.++++.. ....+++++.+|+.+.. + .
T Consensus 13 ~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~--~----~ 84 (241)
T PRK08317 13 ELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLP--F----P 84 (241)
T ss_pred HHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCC--C----C
Confidence 34455667899999999999999999987446899999999999999998733 23346899998875431 1 1
Q ss_pred CCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645 193 ASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK 235 (279)
Q Consensus 193 ~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~ 235 (279)
.++||+|++... ..+...+++.+.++|+|||.+++.+..|...
T Consensus 85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~ 130 (241)
T PRK08317 85 DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTL 130 (241)
T ss_pred CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCce
Confidence 478999998754 3457789999999999999999987766543
No 82
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.44 E-value=1.7e-12 Score=128.22 Aligned_cols=111 Identities=21% Similarity=0.273 Sum_probs=92.6
Q ss_pred HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCC-CcEEEEEcChhhHHHHHHhCCC
Q 023645 114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGE 192 (279)
Q Consensus 114 l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~l~~~~~~~~ 192 (279)
+....++++|||+|||+|.++++++..- ..+|+++|+|+.+++.|++|++.+++. ++++++++|+.+.++..
T Consensus 533 ~~~~~~g~rVLDlf~gtG~~sl~aa~~G--a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~----- 605 (702)
T PRK11783 533 IGQMAKGKDFLNLFAYTGTASVHAALGG--AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA----- 605 (702)
T ss_pred HHHhcCCCeEEEcCCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc-----
Confidence 3444568899999999999999999752 247999999999999999999999986 67999999999877654
Q ss_pred CCcEEEEEEeCCc--------------cchHHHHHHHHccCCCCcEEEEeCCC
Q 023645 193 ASSYDFAFVDAEK--------------RMYQEYFELLLQLIRVGGIIVIDNVL 231 (279)
Q Consensus 193 ~~~fDlI~id~~~--------------~~~~~~l~~~~~~Lk~gG~lv~dd~~ 231 (279)
..+||+|++|++. .++...+..+.++|+|||++++....
T Consensus 606 ~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 606 REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 4689999999762 13566788888999999999987553
No 83
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.44 E-value=2.4e-12 Score=111.76 Aligned_cols=116 Identities=22% Similarity=0.387 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHHhhc--CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645 104 SPDQAQLLAMLVQIL--GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (279)
Q Consensus 104 ~~~~~~~l~~l~~~~--~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~ 181 (279)
.+....++..+.... .+.+|||+|||+|..+..++...+ +.+++++|+++.+++.+++++...++. +++++++|+.
T Consensus 70 ~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~ 147 (251)
T TIGR03534 70 RPDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWF 147 (251)
T ss_pred CCChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchh
Confidence 344445555444432 345999999999999999999876 679999999999999999999988886 5999999987
Q ss_pred hHHHHHHhCCCCCcEEEEEEeCCccc-----------------------------hHHHHHHHHccCCCCcEEEEe
Q 023645 182 DSLKALILNGEASSYDFAFVDAEKRM-----------------------------YQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 182 ~~l~~~~~~~~~~~fDlI~id~~~~~-----------------------------~~~~l~~~~~~Lk~gG~lv~d 228 (279)
+..+ .++||+|+++.+... +..+++.+.++|+|||.+++.
T Consensus 148 ~~~~-------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 148 EPLP-------GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred ccCc-------CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 6332 478999998754110 235678888999999999985
No 84
>PRK14968 putative methyltransferase; Provisional
Probab=99.44 E-value=2.6e-12 Score=106.61 Aligned_cols=110 Identities=16% Similarity=0.237 Sum_probs=86.4
Q ss_pred HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCc-EEEEEcChhhHHHHH
Q 023645 109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK-VKIKHGLAADSLKAL 187 (279)
Q Consensus 109 ~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~-v~~~~gd~~~~l~~~ 187 (279)
.++.......++++|||+|||+|..+..++.. +.+++++|.++++++.+++++...++.++ +.++++|..+.+.
T Consensus 13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-- 87 (188)
T PRK14968 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR-- 87 (188)
T ss_pred HHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--
Confidence 33344444467789999999999999999886 47999999999999999999988887654 8899998865432
Q ss_pred HhCCCCCcEEEEEEeCCcc------------------------chHHHHHHHHccCCCCcEEEEe
Q 023645 188 ILNGEASSYDFAFVDAEKR------------------------MYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 188 ~~~~~~~~fDlI~id~~~~------------------------~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
..+||+|+.+.+.. ....+++.+.++|+|||.+++-
T Consensus 88 -----~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~ 147 (188)
T PRK14968 88 -----GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL 147 (188)
T ss_pred -----ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 34899999875421 1355789999999999988764
No 85
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.44 E-value=1.5e-12 Score=124.01 Aligned_cols=101 Identities=20% Similarity=0.333 Sum_probs=83.9
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI 199 (279)
+.+|||+|||+|.+++.++...+ +.+|+++|+|+.+++.|+++++..++.++++++++|+.+.++ .++||+|
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~-------~~~fDlI 210 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE-------KQKFDFI 210 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc-------CCCccEE
Confidence 46899999999999999998876 689999999999999999999998888889999999865432 4689999
Q ss_pred EEeCCc-----------------------------cchHHHHHHHHccCCCCcEEEEe
Q 023645 200 FVDAEK-----------------------------RMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 200 ~id~~~-----------------------------~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
+++++. ..+..+++.+.++|+|||.+++.
T Consensus 211 vsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 211 VSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred EECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 987541 11334566777899999999985
No 86
>PLN02366 spermidine synthase
Probab=99.42 E-value=8.7e-12 Score=111.38 Aligned_cols=106 Identities=23% Similarity=0.365 Sum_probs=86.7
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhC--C-CCcEEEEEcChhhHHHHHHhCCCCC
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V-SHKVKIKHGLAADSLKALILNGEAS 194 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~-~~~v~~~~gd~~~~l~~~~~~~~~~ 194 (279)
.++++||+||||.|..+..+++. +...+|+.+|+++++++.+++.+...+ + +++++++.+|+.+.+.... ++
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~----~~ 164 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP----EG 164 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc----CC
Confidence 46789999999999999999876 435699999999999999999987532 3 4589999999988776431 36
Q ss_pred cEEEEEEeCCcc-------chHHHHHHHHccCCCCcEEEEe
Q 023645 195 SYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 195 ~fDlI~id~~~~-------~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
+||+|++|.... ...++++.+.+.|+|||+++..
T Consensus 165 ~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 165 TYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred CCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 899999986532 1457899999999999999875
No 87
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.41 E-value=1.9e-12 Score=115.03 Aligned_cols=99 Identities=17% Similarity=0.256 Sum_probs=81.3
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
..++.+|||+|||+|..+.++++. +.+|+++|+|+.+++.++++.+..++ ++++..+|..+.. + +++|
T Consensus 118 ~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~--~-----~~~f 185 (287)
T PRK12335 118 TVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSAS--I-----QEEY 185 (287)
T ss_pred ccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccc--c-----cCCc
Confidence 345679999999999999999874 57999999999999999999988887 4888888875421 1 4789
Q ss_pred EEEEEeCC-----ccchHHHHHHHHccCCCCcEEEE
Q 023645 197 DFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 197 DlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
|+|++... ......+++.+.+.|+|||++++
T Consensus 186 D~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 186 DFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred cEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 99987643 24567889999999999999665
No 88
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.41 E-value=1.1e-11 Score=103.39 Aligned_cols=116 Identities=14% Similarity=0.103 Sum_probs=89.7
Q ss_pred HHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHh
Q 023645 110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 189 (279)
Q Consensus 110 ~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~ 189 (279)
++..+.....+.+|||++||+|..++.+++... .+|+++|.++.+++.++++++..+..++++++.+|+.+.+..+..
T Consensus 40 ~f~~l~~~~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~ 117 (189)
T TIGR00095 40 FFNILRPEIQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK 117 (189)
T ss_pred HHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc
Confidence 333333345678999999999999999998743 489999999999999999999999877899999999877654321
Q ss_pred CCCCCcEEEEEEeCCcc--chHHHHHHHH--ccCCCCcEEEEeC
Q 023645 190 NGEASSYDFAFVDAEKR--MYQEYFELLL--QLIRVGGIIVIDN 229 (279)
Q Consensus 190 ~~~~~~fDlI~id~~~~--~~~~~l~~~~--~~Lk~gG~lv~dd 229 (279)
. ...||+||.|++.. .+...++.+. .+|+++|++++..
T Consensus 118 ~--~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 118 K--PTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred c--CCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 1 23589999998743 3455555553 5799999999864
No 89
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.41 E-value=2.4e-12 Score=115.21 Aligned_cols=110 Identities=14% Similarity=0.130 Sum_probs=83.1
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
..++++|||||||+|+.+..++...+ ..|+|+|+|+.++..++..-+..+...++.+..+++.+... ..+|
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-------~~~F 189 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-------LYAF 189 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-------CCCc
Confidence 35678999999999999988887533 47999999999987654433333334568888888754321 3589
Q ss_pred EEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645 197 DFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK 235 (279)
Q Consensus 197 DlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~ 235 (279)
|+||+.+. ..+....+.++.+.|+|||.|++......|.
T Consensus 190 D~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~ 231 (314)
T TIGR00452 190 DTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGD 231 (314)
T ss_pred CEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCc
Confidence 99998764 4456789999999999999999987765553
No 90
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.41 E-value=4.1e-12 Score=115.88 Aligned_cols=103 Identities=21% Similarity=0.234 Sum_probs=87.2
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl 198 (279)
....+||||||+|..+..+|...| +..++|+|+++.+++.|.+.+...++.+ +.++++|+...+..+ .++++|.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~----~~~s~D~ 195 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLELL----PSNSVEK 195 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhhhC----CCCceeE
Confidence 456899999999999999999987 7899999999999999999999988875 999999997655433 2579999
Q ss_pred EEEeCCcc---------chHHHHHHHHccCCCCcEEEE
Q 023645 199 AFVDAEKR---------MYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 199 I~id~~~~---------~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
|+++.+.. ....+++.+.++|+|||.+.+
T Consensus 196 I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 196 IFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred EEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence 99875421 126789999999999999887
No 91
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.40 E-value=3.3e-12 Score=115.92 Aligned_cols=98 Identities=16% Similarity=0.204 Sum_probs=81.7
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl 198 (279)
...+|||+|||+|..+..+++..+ ..+|+++|+++.+++.++++++.+++. .+++.+|..+. . .++||+
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~---~-----~~~fDl 264 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD---I-----KGRFDM 264 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc---c-----CCCccE
Confidence 345899999999999999998876 679999999999999999999988875 46777777542 1 478999
Q ss_pred EEEeCCcc--------chHHHHHHHHccCCCCcEEEE
Q 023645 199 AFVDAEKR--------MYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 199 I~id~~~~--------~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
|+++.+.+ ....++..+.+.|+|||.+++
T Consensus 265 IvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 265 IISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred EEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 99987632 246788999999999999876
No 92
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.40 E-value=6.3e-12 Score=104.26 Aligned_cols=126 Identities=23% Similarity=0.371 Sum_probs=95.7
Q ss_pred CCCCCHHHHHHHHHHHhh-cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc
Q 023645 100 QMQVSPDQAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178 (279)
Q Consensus 100 ~~~~~~~~~~~l~~l~~~-~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g 178 (279)
++..+.....++..+... ..+.+|||+.||+|..++..+++- ..+|+.||.++..+...++|++..+..++++++.+
T Consensus 22 RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~ 99 (183)
T PF03602_consen 22 RPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKG 99 (183)
T ss_dssp -SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEES
T ss_pred CCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeecc
Confidence 445555566666666666 788999999999999999877763 25999999999999999999999999888999999
Q ss_pred ChhhHHHHHHhCCCCCcEEEEEEeCCccc---hHHHHHHHH--ccCCCCcEEEEeC
Q 023645 179 LAADSLKALILNGEASSYDFAFVDAEKRM---YQEYFELLL--QLIRVGGIIVIDN 229 (279)
Q Consensus 179 d~~~~l~~~~~~~~~~~fDlI~id~~~~~---~~~~l~~~~--~~Lk~gG~lv~dd 229 (279)
|+...+...... ..+||+||+|++... +...++.+. .+|+++|+|++.-
T Consensus 100 d~~~~l~~~~~~--~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 100 DAFKFLLKLAKK--GEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp SHHHHHHHHHHC--TS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred CHHHHHHhhccc--CCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 998887665332 479999999998432 366777776 8999999999964
No 93
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.40 E-value=4.5e-12 Score=107.08 Aligned_cols=103 Identities=17% Similarity=0.255 Sum_probs=79.0
Q ss_pred hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (279)
Q Consensus 116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~ 195 (279)
...++.+|||+|||+|..+..+++..+ +.+++|+|+|+++++.|++++. ++.+.++|+.+.. .+++
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~~~-------~~~s 105 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFDPF-------KDNF 105 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccCCC-------CCCC
Confidence 344667999999999999999998765 6799999999999999988642 3678888876521 1579
Q ss_pred EEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645 196 YDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234 (279)
Q Consensus 196 fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g 234 (279)
||+|++... .......++++.+.+ ++++++.++.-+.
T Consensus 106 fD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 106 FDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred EEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 999998664 233567788888876 5688887775444
No 94
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.40 E-value=5e-12 Score=108.70 Aligned_cols=109 Identities=17% Similarity=0.235 Sum_probs=89.4
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
..++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++...+...+++++.+|+.+... +.++|
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~ 122 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF------PDNSF 122 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC------CCCCc
Confidence 345679999999999999999998765689999999999999999998876666679999999865421 14689
Q ss_pred EEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645 197 DFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL 231 (279)
Q Consensus 197 DlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~ 231 (279)
|+|++... ..+....++.+.++|+|||.+++-+..
T Consensus 123 D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 160 (239)
T PRK00216 123 DAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFS 160 (239)
T ss_pred cEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEec
Confidence 99987643 445778899999999999999875543
No 95
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.38 E-value=3.8e-12 Score=120.80 Aligned_cols=108 Identities=14% Similarity=0.207 Sum_probs=87.5
Q ss_pred hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (279)
Q Consensus 116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~ 195 (279)
...++.+|||||||+|..+..+++.. +++|+|+|+|+++++.|+++.. +...++++.++|+.+.. + .+++
T Consensus 263 ~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~--~----~~~~ 332 (475)
T PLN02336 263 DLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKT--Y----PDNS 332 (475)
T ss_pred CCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCC--C----CCCC
Confidence 34567799999999999999999875 4799999999999999998765 44557999999986531 1 1468
Q ss_pred EEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645 196 YDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH 233 (279)
Q Consensus 196 fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~ 233 (279)
||+|++... ..+...+++.+.+.|+|||.+++.+....
T Consensus 333 fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 373 (475)
T PLN02336 333 FDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRS 373 (475)
T ss_pred EEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 999998644 34567899999999999999999876543
No 96
>PRK06922 hypothetical protein; Provisional
Probab=99.38 E-value=5.6e-12 Score=120.81 Aligned_cols=114 Identities=14% Similarity=0.201 Sum_probs=88.9
Q ss_pred HHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC
Q 023645 112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG 191 (279)
Q Consensus 112 ~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~ 191 (279)
..+....++.+|||||||+|..+..+++..| +++++|+|+++.+++.|+++....+ .++.++++|+.+....+
T Consensus 411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~f---- 483 (677)
T PRK06922 411 RIILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSF---- 483 (677)
T ss_pred HHHhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCcccc----
Confidence 3445556788999999999999999998876 7899999999999999998876544 35888999987532112
Q ss_pred CCCcEEEEEEeCC----------------ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645 192 EASSYDFAFVDAE----------------KRMYQEYFELLLQLIRVGGIIVIDNVLW 232 (279)
Q Consensus 192 ~~~~fDlI~id~~----------------~~~~~~~l~~~~~~Lk~gG~lv~dd~~~ 232 (279)
++++||+|++... ......+++.+.+.|||||.+++.|..+
T Consensus 484 edeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 484 EKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred CCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 1578999987532 1245678999999999999999976543
No 97
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.38 E-value=7.9e-12 Score=108.90 Aligned_cols=100 Identities=17% Similarity=0.188 Sum_probs=79.8
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI 199 (279)
+.+|||+|||+|..++.++...+ +.+|+++|+++.+++.|+++++.++ ++++++|+.+.++... .++||+|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~----~~~fDlV 157 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTAL----RGRVDIL 157 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhc----CCCEeEE
Confidence 45899999999999999998876 5799999999999999999998755 4789999876543221 3579999
Q ss_pred EEeCCccc-----------------------------hHHHHHHHHccCCCCcEEEEe
Q 023645 200 FVDAEKRM-----------------------------YQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 200 ~id~~~~~-----------------------------~~~~l~~~~~~Lk~gG~lv~d 228 (279)
++|++... +..+++.+.++|+|||.+++.
T Consensus 158 v~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 158 AANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred EECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99875210 235666677999999999985
No 98
>PRK14967 putative methyltransferase; Provisional
Probab=99.38 E-value=9.6e-12 Score=106.54 Aligned_cols=99 Identities=18% Similarity=0.271 Sum_probs=80.1
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
.++.+|||+|||+|..+..+++. + ..+++++|+++.+++.++++++..+. +++++.+|+.+.++ +++||
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~-------~~~fD 103 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVE-------FRPFD 103 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhcc-------CCCee
Confidence 45679999999999999998875 3 35999999999999999999988776 48899999865432 47899
Q ss_pred EEEEeCCcc------------------------chHHHHHHHHccCCCCcEEEE
Q 023645 198 FAFVDAEKR------------------------MYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 198 lI~id~~~~------------------------~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
+|+++.+.. .+..+++.+.++|+|||.+++
T Consensus 104 ~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 104 VVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred EEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 999985411 134567788999999999986
No 99
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.38 E-value=4.9e-12 Score=114.58 Aligned_cols=117 Identities=20% Similarity=0.280 Sum_probs=95.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (279)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~ 181 (279)
.+.+..+..+..++...++.+|||+|||+|..++.++.. +.+++|+|+++.+++.++++++..|+.+ +++.++|+.
T Consensus 165 ~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~ 240 (329)
T TIGR01177 165 SMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDAT 240 (329)
T ss_pred CCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchh
Confidence 456677777777777778889999999999998876653 5799999999999999999999999876 899999997
Q ss_pred hHHHHHHhCCCCCcEEEEEEeCCc------------cchHHHHHHHHccCCCCcEEEEe
Q 023645 182 DSLKALILNGEASSYDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 182 ~~l~~~~~~~~~~~fDlI~id~~~------------~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
+. +.. +++||+|++|++. ..+..+++.+.+.|+|||.+++-
T Consensus 241 ~l-~~~-----~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 241 KL-PLS-----SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred cC-Ccc-----cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 64 211 4789999998652 12577889999999999998873
No 100
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.38 E-value=7.2e-12 Score=115.03 Aligned_cols=118 Identities=18% Similarity=0.260 Sum_probs=90.5
Q ss_pred CCCHHHHHHHHHHHhh-cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645 102 QVSPDQAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (279)
Q Consensus 102 ~~~~~~~~~l~~l~~~-~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~ 180 (279)
...+++..++..+... .+..+|||+|||+|..++.++...+ +.+++++|+|+++++.|+++++..+. +++++++|.
T Consensus 233 IPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl 309 (423)
T PRK14966 233 IPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGA--RVEFAHGSW 309 (423)
T ss_pred CCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcch
Confidence 3456667777766553 3456999999999999999998766 68999999999999999999988764 699999998
Q ss_pred hhHHHHHHhCCCCCcEEEEEEeCCcc----------------------------chHHHHHHHHccCCCCcEEEE
Q 023645 181 ADSLKALILNGEASSYDFAFVDAEKR----------------------------MYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 181 ~~~l~~~~~~~~~~~fDlI~id~~~~----------------------------~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
.+..... .++||+|+++++.- .+..+++.+.+.|+|||.+++
T Consensus 310 ~e~~l~~-----~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 310 FDTDMPS-----EGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred hcccccc-----CCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 6531111 35799999987520 133455666689999999887
No 101
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.38 E-value=5.7e-12 Score=111.04 Aligned_cols=116 Identities=19% Similarity=0.374 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHH---hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645 104 SPDQAQLLAMLV---QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (279)
Q Consensus 104 ~~~~~~~l~~l~---~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~ 180 (279)
.+++..++..+. ...++.+|||+|||+|..+..++...+ ..+++++|+++.+++.|+++++ .+...++.++++|+
T Consensus 90 r~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~ 167 (275)
T PRK09328 90 RPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDW 167 (275)
T ss_pred CCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccc
Confidence 344444455444 234567999999999999999999886 6899999999999999999988 44455799999998
Q ss_pred hhHHHHHHhCCCCCcEEEEEEeCCc-----------------------------cchHHHHHHHHccCCCCcEEEEe
Q 023645 181 ADSLKALILNGEASSYDFAFVDAEK-----------------------------RMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 181 ~~~l~~~~~~~~~~~fDlI~id~~~-----------------------------~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
.+.++ .++||+|+++.+. ..+..+++.+.++|+|||.+++.
T Consensus 168 ~~~~~-------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 168 FEPLP-------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred cCcCC-------CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 54322 3689999987541 11345677778999999999983
No 102
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=5.3e-12 Score=111.54 Aligned_cols=117 Identities=18% Similarity=0.362 Sum_probs=90.8
Q ss_pred CCCHHHHHHHHHHH-hh-cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC
Q 023645 102 QVSPDQAQLLAMLV-QI-LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 179 (279)
Q Consensus 102 ~~~~~~~~~l~~l~-~~-~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd 179 (279)
...+++..++..+. .. ..+.+|||+|||+|..++.++...+ ..+|+++|+|+++++.|++|...+|+ .++.++.+|
T Consensus 91 iPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~d 168 (280)
T COG2890 91 IPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGL-VRVLVVQSD 168 (280)
T ss_pred ecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeee
Confidence 34566776777643 11 1222799999999999999999987 68999999999999999999999998 557777777
Q ss_pred hhhHHHHHHhCCCCCcEEEEEEeCC---cc-------------------------chHHHHHHHHccCCCCcEEEEe
Q 023645 180 AADSLKALILNGEASSYDFAFVDAE---KR-------------------------MYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 180 ~~~~l~~~~~~~~~~~fDlI~id~~---~~-------------------------~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
.++.+ .++||+|+++++ .+ .+..++..+...|+|||++++.
T Consensus 169 lf~~~--------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 169 LFEPL--------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred ccccc--------CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 66543 469999998865 11 1345667777999999999985
No 103
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.37 E-value=6.2e-12 Score=104.41 Aligned_cols=104 Identities=18% Similarity=0.266 Sum_probs=81.6
Q ss_pred HhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (279)
Q Consensus 115 ~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~ 194 (279)
++..++.++||+|||.|..++++|+. +..|+++|.|+..++.+++..+..+++ ++..+.|..+... .+
T Consensus 26 ~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~-------~~ 93 (192)
T PF03848_consen 26 VPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDF-------PE 93 (192)
T ss_dssp CTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS--------TT
T ss_pred HhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccc-------cC
Confidence 44556789999999999999999986 679999999999999999988888875 8999998865422 46
Q ss_pred cEEEEEEeC-----CccchHHHHHHHHccCCCCcEEEEeCC
Q 023645 195 SYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDNV 230 (279)
Q Consensus 195 ~fDlI~id~-----~~~~~~~~l~~~~~~Lk~gG~lv~dd~ 230 (279)
.||+|++.. ..+..+..++.+...++|||++++...
T Consensus 94 ~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 94 EYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp TEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 899998753 255567789999999999999888443
No 104
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=99.37 E-value=4.8e-11 Score=99.28 Aligned_cols=156 Identities=23% Similarity=0.320 Sum_probs=120.2
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcCccCH--HHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645 104 SPDQAQLLAMLVQILGAQRCIEVGVYTGY--SSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (279)
Q Consensus 104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~--~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~ 180 (279)
.|..++||..++.-...+.++|+.|+.|. +|+.|+-+. .-+++++||-.+++.....++.+...++.+.++|+.|+.
T Consensus 26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~ 105 (218)
T PF07279_consen 26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA 105 (218)
T ss_pred CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence 56789999999999999999999877553 345544332 236899999999998888889998889888789999985
Q ss_pred h-hHHHHHHhCCCCCcEEEEEEeCCccchH-HHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhh
Q 023645 181 A-DSLKALILNGEASSYDFAFVDAEKRMYQ-EYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLME 258 (279)
Q Consensus 181 ~-~~l~~~~~~~~~~~fDlI~id~~~~~~~-~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~ 258 (279)
. +.++.+ ...|++++|+..+++. .+|+. .++=++|.++|..|.+..+. .. ..|...+..
T Consensus 106 ~e~~~~~~------~~iDF~vVDc~~~d~~~~vl~~-~~~~~~GaVVV~~Na~~r~~-~~-----------~~w~~~~~~ 166 (218)
T PF07279_consen 106 PEEVMPGL------KGIDFVVVDCKREDFAARVLRA-AKLSPRGAVVVCYNAFSRST-NG-----------FSWRSVLRG 166 (218)
T ss_pred HHHHHhhc------cCCCEEEEeCCchhHHHHHHHH-hccCCCceEEEEeccccCCc-CC-----------ccHHHhcCC
Confidence 4 456654 6899999999988877 66665 34445677888888765432 10 235666778
Q ss_pred CCCeEEEEeecCCceEEEEE
Q 023645 259 DERVSISMVPIGDGMTICQK 278 (279)
Q Consensus 259 ~~~~~~~~lp~~~G~~i~~~ 278 (279)
.+.+.++.||||.||.+++-
T Consensus 167 ~r~Vrsv~LPIG~GleVt~i 186 (218)
T PF07279_consen 167 RRVVRSVFLPIGKGLEVTRI 186 (218)
T ss_pred CCceeEEEeccCCCeEEEEE
Confidence 88899999999999999873
No 105
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.37 E-value=8.7e-12 Score=109.80 Aligned_cols=109 Identities=23% Similarity=0.332 Sum_probs=84.6
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCC-CcEEEEEcChhhHHHHHHhCCCCCc
Q 023645 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEASS 195 (279)
Q Consensus 117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~l~~~~~~~~~~~ 195 (279)
...+++||++.|+||.+++..+..- ..+|++||.|..+++.+++|++.+|++ ++++++.+|+.+.+..+.. .++
T Consensus 121 ~~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~---~~~ 195 (286)
T PF10672_consen 121 YAKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK---GGR 195 (286)
T ss_dssp HCTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH---TT-
T ss_pred HcCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc---CCC
Confidence 3457899999999999999877642 248999999999999999999999986 6799999999998876533 469
Q ss_pred EEEEEEeCC---------ccchHHHHHHHHccCCCCcEEEEeCC
Q 023645 196 YDFAFVDAE---------KRMYQEYFELLLQLIRVGGIIVIDNV 230 (279)
Q Consensus 196 fDlI~id~~---------~~~~~~~l~~~~~~Lk~gG~lv~dd~ 230 (279)
||+|++|++ ..+|...+..+.++|+|||+|++-..
T Consensus 196 fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 196 FDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 999999987 34577788888999999999886443
No 106
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=6.9e-12 Score=109.77 Aligned_cols=113 Identities=21% Similarity=0.300 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH
Q 023645 104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 183 (279)
Q Consensus 104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~ 183 (279)
.....-++..+..... .+|||+|||.|..++.+++..| ..+++.+|+|..+++.|+++++.++.++. .+...|..+.
T Consensus 144 D~GS~lLl~~l~~~~~-~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~ 220 (300)
T COG2813 144 DKGSRLLLETLPPDLG-GKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEP 220 (300)
T ss_pred ChHHHHHHHhCCccCC-CcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEeccccc
Confidence 3344444444444434 4999999999999999999988 88999999999999999999999988764 6777777654
Q ss_pred HHHHHhCCCCCcEEEEEEeCCccc----h----HHHHHHHHccCCCCcEEEE
Q 023645 184 LKALILNGEASSYDFAFVDAEKRM----Y----QEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 184 l~~~~~~~~~~~fDlI~id~~~~~----~----~~~l~~~~~~Lk~gG~lv~ 227 (279)
. .++||+|+++++.+. . .++++.+.+.|++||.|.+
T Consensus 221 v--------~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~i 264 (300)
T COG2813 221 V--------EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI 264 (300)
T ss_pred c--------cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEE
Confidence 3 359999999987332 2 3778888999999998765
No 107
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.37 E-value=1.5e-11 Score=110.71 Aligned_cols=122 Identities=19% Similarity=0.094 Sum_probs=91.1
Q ss_pred CCCCCCCHHHHHHHHH----HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcE
Q 023645 98 GSQMQVSPDQAQLLAM----LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV 173 (279)
Q Consensus 98 ~~~~~~~~~~~~~l~~----l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v 173 (279)
.++.++++...+.+.. ++...++.+|||+|||+|..++.+++. +.+|+++|+++.+++.|+++++.+++ +++
T Consensus 148 ~sF~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l-~~v 223 (315)
T PRK03522 148 QSFFQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGL-TNV 223 (315)
T ss_pred CeeeecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCC-Cce
Confidence 4455666655444432 222235689999999999999999984 46999999999999999999999998 469
Q ss_pred EEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645 174 KIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 174 ~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
+++++|+.+..... .++||+|++|++.......+..+...++|++++++.
T Consensus 224 ~~~~~D~~~~~~~~-----~~~~D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvs 273 (315)
T PRK03522 224 QFQALDSTQFATAQ-----GEVPDLVLVNPPRRGIGKELCDYLSQMAPRFILYSS 273 (315)
T ss_pred EEEEcCHHHHHHhc-----CCCCeEEEECCCCCCccHHHHHHHHHcCCCeEEEEE
Confidence 99999998765432 357999999988665444444444557788777763
No 108
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.36 E-value=1.8e-13 Score=102.05 Aligned_cols=96 Identities=18% Similarity=0.218 Sum_probs=62.6
Q ss_pred EEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeC
Q 023645 124 IEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA 203 (279)
Q Consensus 124 LEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~ 203 (279)
||||||+|..+..++..++ ..+++++|+|+.+++.+++.+...+... ......+..+..... ..++||+|++..
T Consensus 1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~fD~V~~~~ 74 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-DARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYD----PPESFDLVVASN 74 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CC----C----SEEEEE-
T ss_pred CEeCccChHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcc----cccccceehhhh
Confidence 7999999999999999985 7899999999999999999888766543 333333333322211 025999999865
Q ss_pred C---ccchHHHHHHHHccCCCCcEE
Q 023645 204 E---KRMYQEYFELLLQLIRVGGII 225 (279)
Q Consensus 204 ~---~~~~~~~l~~~~~~Lk~gG~l 225 (279)
. .++...+++.+.++|+|||+|
T Consensus 75 vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 75 VLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred hHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 4 356778999999999999986
No 109
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.36 E-value=3.3e-12 Score=111.23 Aligned_cols=101 Identities=13% Similarity=0.160 Sum_probs=79.3
Q ss_pred hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (279)
Q Consensus 116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~ 195 (279)
...++.+|||+|||+|..+..++.. +.+++++|+++++++.++++.. ...++++|+.+. +. .+++
T Consensus 39 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~-~~-----~~~~ 103 (251)
T PRK10258 39 PQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESL-PL-----ATAT 103 (251)
T ss_pred CccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccC-cC-----CCCc
Confidence 3345679999999999999888763 5799999999999999987643 246788888653 21 1568
Q ss_pred EEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645 196 YDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL 231 (279)
Q Consensus 196 fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~ 231 (279)
||+|+++.. ..+....+.++.++|+|||.+++....
T Consensus 104 fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 104 FDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred EEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 999998754 456778899999999999999986543
No 110
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.35 E-value=1.8e-11 Score=103.83 Aligned_cols=105 Identities=15% Similarity=0.149 Sum_probs=88.3
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCC-----CEEEEEeCChhHHHHHHHHHHHhCCCCc--EEEEEcChhhHHHHHHh
Q 023645 117 ILGAQRCIEVGVYTGYSSLAIALVLPES-----GCLVACERDARSLEVAKKYYERAGVSHK--VKIKHGLAADSLKALIL 189 (279)
Q Consensus 117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~-----~~v~~iD~s~~~~~~a~~~~~~~g~~~~--v~~~~gd~~~~l~~~~~ 189 (279)
.....++||++||||..+..+.+..+.. ++|+.+|++|+|+..+++...+.++... +.++++|+.+. | +
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-p-F-- 173 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-P-F-- 173 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-C-C--
Confidence 3455799999999999999999987632 7999999999999999999988777655 89999999754 3 2
Q ss_pred CCCCCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEE
Q 023645 190 NGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 190 ~~~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
++.+||...+... ..+....+++++++|||||.+.+
T Consensus 174 --dd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~c 212 (296)
T KOG1540|consen 174 --DDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSC 212 (296)
T ss_pred --CCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEE
Confidence 2689999887765 55678899999999999999875
No 111
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.34 E-value=1.6e-12 Score=110.75 Aligned_cols=101 Identities=16% Similarity=0.203 Sum_probs=80.5
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCC-----cEEEEEcChhhHHHHHHhCCCC
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-----KVKIKHGLAADSLKALILNGEA 193 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~-----~v~~~~gd~~~~l~~~~~~~~~ 193 (279)
-+++|||+|||+|..+..|++. ++.|+|||+++++++.|++........+ ++++.+.++.+. .
T Consensus 89 ~g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---------~ 156 (282)
T KOG1270|consen 89 LGMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---------T 156 (282)
T ss_pred CCceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---------c
Confidence 3578999999999999999986 5799999999999999999854433333 255666665432 4
Q ss_pred CcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645 194 SSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL 231 (279)
Q Consensus 194 ~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~ 231 (279)
++||.|++.-. ..+..++++.+.++|||||.+++..+.
T Consensus 157 ~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 157 GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 67999998654 345678899999999999999998876
No 112
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.34 E-value=1.1e-11 Score=106.51 Aligned_cols=102 Identities=21% Similarity=0.253 Sum_probs=82.9
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl 198 (279)
.+.+|||+|||+|.++..+++..+ ..+++++|++++++..+++... .+++++.+|+.+... .+++||+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~------~~~~fD~ 101 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPL------EDSSFDL 101 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCC------CCCceeE
Confidence 457999999999999999999876 6789999999999998887654 258899999865421 1578999
Q ss_pred EEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645 199 AFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW 232 (279)
Q Consensus 199 I~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~ 232 (279)
|++... ..+....++.+.++|+|||.+++.....
T Consensus 102 vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 102 IVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred EEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 998754 3356788999999999999999975543
No 113
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.32 E-value=5.9e-11 Score=102.14 Aligned_cols=116 Identities=16% Similarity=0.222 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHH
Q 023645 105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 184 (279)
Q Consensus 105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l 184 (279)
+....++.......++.+|||||||+|..+..+++. +.+++++|+++.+++.+++++...+. .++++.++..+..
T Consensus 34 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 108 (233)
T PRK05134 34 PLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELA 108 (233)
T ss_pred HHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhh
Confidence 333445555555556789999999999999888875 46899999999999999998877665 4788888886654
Q ss_pred HHHHhCCCCCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCC
Q 023645 185 KALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV 230 (279)
Q Consensus 185 ~~~~~~~~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~ 230 (279)
... .++||+|++... ..+....++.+.+.|+|||.+++...
T Consensus 109 ~~~-----~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 109 AEH-----PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hhc-----CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 322 478999988643 33566788999999999999998754
No 114
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.32 E-value=2.5e-11 Score=103.23 Aligned_cols=106 Identities=22% Similarity=0.262 Sum_probs=85.8
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
.++.+|||+|||+|..+..+++..+..++++++|+++.+++.+++++. ...+++++.+|+.+... ..++||
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~------~~~~~D 108 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPF------EDNSFD 108 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCC------CCCcEE
Confidence 367899999999999999999988744799999999999999998875 34568999999876431 146899
Q ss_pred EEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645 198 FAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW 232 (279)
Q Consensus 198 lI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~ 232 (279)
+|++... ..+....++.+.+.|+|||.+++.+...
T Consensus 109 ~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 109 AVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred EEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 9987643 4557788999999999999999866543
No 115
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.31 E-value=1.7e-11 Score=104.22 Aligned_cols=102 Identities=16% Similarity=0.066 Sum_probs=76.3
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCC--------------CCcEEEEEcChhhHH
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--------------SHKVKIKHGLAADSL 184 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~--------------~~~v~~~~gd~~~~l 184 (279)
++.+|||+|||.|..+.+||+. +.+|+|+|+|+.+++.+.+ ++++ ..+++++++|+.+..
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~ 107 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT 107 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCCC
Confidence 5569999999999999999975 6799999999999997633 2222 235899999998653
Q ss_pred HHHHhCCCCCcEEEEEEe-----CCccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645 185 KALILNGEASSYDFAFVD-----AEKRMYQEYFELLLQLIRVGGIIVIDNVL 231 (279)
Q Consensus 185 ~~~~~~~~~~~fDlI~id-----~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~ 231 (279)
... .++||.|+-. .+.+....+++.+.++|+|||++++....
T Consensus 108 ~~~-----~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 108 AAD-----LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred ccc-----CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 321 2568877642 23455677999999999999986665443
No 116
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.30 E-value=1.9e-11 Score=110.32 Aligned_cols=100 Identities=18% Similarity=0.176 Sum_probs=80.5
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl 198 (279)
++.+|||||||+|..+..+++..+ +.+++++|.++++++.|+++... .+++++.+|+.+. +. .+++||+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~l-p~-----~~~sFDv 181 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDL-PF-----PTDYADR 181 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhC-CC-----CCCceeE
Confidence 457999999999999999998775 57999999999999999987642 3478899998653 11 1578999
Q ss_pred EEEeCC---ccchHHHHHHHHccCCCCcEEEEeC
Q 023645 199 AFVDAE---KRMYQEYFELLLQLIRVGGIIVIDN 229 (279)
Q Consensus 199 I~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd 229 (279)
|++... ..+....++++.+.|+|||.+++-+
T Consensus 182 VIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred EEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 998653 3345678999999999999987743
No 117
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.30 E-value=2.7e-11 Score=103.66 Aligned_cols=125 Identities=17% Similarity=0.301 Sum_probs=97.7
Q ss_pred CCCCHHHHHHHHHHHhh------cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEE
Q 023645 101 MQVSPDQAQLLAMLVQI------LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174 (279)
Q Consensus 101 ~~~~~~~~~~l~~l~~~------~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~ 174 (279)
....+++.+++...++. ..+..+||+|||+|..++.++..+| .++|+++|.|+.++..|.+|..++++.+++.
T Consensus 124 lIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~ 202 (328)
T KOG2904|consen 124 LIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIE 202 (328)
T ss_pred eecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceE
Confidence 34567888888877664 2455899999999999999999998 8999999999999999999999999999999
Q ss_pred EEEcCh----hhHHHHHHhCCCCCcEEEEEEeCCc-----------------------------cchHHHHHHHHccCCC
Q 023645 175 IKHGLA----ADSLKALILNGEASSYDFAFVDAEK-----------------------------RMYQEYFELLLQLIRV 221 (279)
Q Consensus 175 ~~~gd~----~~~l~~~~~~~~~~~fDlI~id~~~-----------------------------~~~~~~l~~~~~~Lk~ 221 (279)
+++-+. .+..+.+ .+++|+++++++. +.+..++..+.++|+|
T Consensus 203 v~~~~me~d~~~~~~l~-----~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~ 277 (328)
T KOG2904|consen 203 VIHNIMESDASDEHPLL-----EGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQP 277 (328)
T ss_pred EEecccccccccccccc-----cCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhccc
Confidence 885533 3222222 5899999887540 1123456666799999
Q ss_pred CcEEEEeCCC
Q 023645 222 GGIIVIDNVL 231 (279)
Q Consensus 222 gG~lv~dd~~ 231 (279)
||.+.+.-+.
T Consensus 278 gg~~~le~~~ 287 (328)
T KOG2904|consen 278 GGFEQLELVE 287 (328)
T ss_pred CCeEEEEecc
Confidence 9999997553
No 118
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.30 E-value=6.7e-11 Score=108.89 Aligned_cols=122 Identities=17% Similarity=0.106 Sum_probs=94.0
Q ss_pred CCCCCCCCHHHHHHHHHHH-h---hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCc
Q 023645 97 RGSQMQVSPDQAQLLAMLV-Q---ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK 172 (279)
Q Consensus 97 ~~~~~~~~~~~~~~l~~l~-~---~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~ 172 (279)
+.++.++++...+.+...+ . ..++.+|||+|||+|..++.++.. +.+|+++|+++.+++.|+++.+.++.. +
T Consensus 207 ~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~-~ 282 (374)
T TIGR02085 207 PQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLD-N 282 (374)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCC-c
Confidence 4556777777766654433 2 235679999999999999999864 468999999999999999999998885 6
Q ss_pred EEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccch-HHHHHHHHccCCCCcEEEEe
Q 023645 173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMY-QEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 173 v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~-~~~l~~~~~~Lk~gG~lv~d 228 (279)
++++.+|+.+.+... ..+||+|++|++.... ...++.+. .++|++++++.
T Consensus 283 ~~~~~~d~~~~~~~~-----~~~~D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 283 LSFAALDSAKFATAQ-----MSAPELVLVNPPRRGIGKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred EEEEECCHHHHHHhc-----CCCCCEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEE
Confidence 999999998766432 3569999999986653 34445554 57898888874
No 119
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.30 E-value=1.2e-10 Score=95.61 Aligned_cols=127 Identities=18% Similarity=0.305 Sum_probs=100.1
Q ss_pred CCCCCCCHHHHHHHHHHHh-hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEE
Q 023645 98 GSQMQVSPDQAQLLAMLVQ-ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK 176 (279)
Q Consensus 98 ~~~~~~~~~~~~~l~~l~~-~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~ 176 (279)
..++..+.....+...+.. ...+.++||+.+|+|..++..+++. ..+++.||.+.......++|++..++..+++++
T Consensus 21 ~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~ 98 (187)
T COG0742 21 GTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALGLEGEARVL 98 (187)
T ss_pred CcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhCCccceEEE
Confidence 3455666666777777777 4888999999999999999988764 268999999999999999999999988889999
Q ss_pred EcChhhHHHHHHhCCCCCcEEEEEEeCCcc--chHHHHHHH----HccCCCCcEEEEeC
Q 023645 177 HGLAADSLKALILNGEASSYDFAFVDAEKR--MYQEYFELL----LQLIRVGGIIVIDN 229 (279)
Q Consensus 177 ~gd~~~~l~~~~~~~~~~~fDlI~id~~~~--~~~~~l~~~----~~~Lk~gG~lv~dd 229 (279)
..|+...++.... .++||+||+|++.. ........+ ..+|+|+|.+++..
T Consensus 99 ~~da~~~L~~~~~---~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 99 RNDALRALKQLGT---REPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred eecHHHHHHhcCC---CCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 9999877766521 23599999999855 232233333 37899999999964
No 120
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.29 E-value=5e-11 Score=106.63 Aligned_cols=110 Identities=14% Similarity=0.047 Sum_probs=80.8
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl 198 (279)
++.+|||+|||+|..+..+++.++.+.+|+++|+|++|++.+++++......-++.++++|+.+.++.. .........+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~-~~~~~~~~~~ 141 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP-PEPAAGRRLG 141 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh-cccccCCeEE
Confidence 457999999999999999999876457999999999999999998876443335788999997643322 1000113344
Q ss_pred EEEeCC-----ccchHHHHHHHHccCCCCcEEEEeC
Q 023645 199 AFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDN 229 (279)
Q Consensus 199 I~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd 229 (279)
++++.. ......+++.+.+.|+|||.++++-
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 554432 3445678999999999999998743
No 121
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.29 E-value=3.3e-11 Score=97.05 Aligned_cols=106 Identities=22% Similarity=0.243 Sum_probs=77.8
Q ss_pred HHHHHHHHHh-hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHH
Q 023645 107 QAQLLAMLVQ-ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 185 (279)
Q Consensus 107 ~~~~l~~l~~-~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~ 185 (279)
....+..+.. ..++.+|||||||+|..+..+++. +.+++++|+++.+++. ..+....-+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~ 74 (161)
T PF13489_consen 9 YADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPF 74 (161)
T ss_dssp HHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHC
T ss_pred HHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhc
Confidence 3445555554 567789999999999999999765 3599999999999877 112232222222111
Q ss_pred HHHhCCCCCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645 186 ALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW 232 (279)
Q Consensus 186 ~~~~~~~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~ 232 (279)
. +++||+|++... ..+...+++.+.++|||||++++.....
T Consensus 75 -~-----~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 75 -P-----DGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp -H-----SSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred -c-----ccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 1 689999999865 3457789999999999999999988764
No 122
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.29 E-value=3.1e-11 Score=102.38 Aligned_cols=99 Identities=18% Similarity=0.227 Sum_probs=74.1
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCCCCCc
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASS 195 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~~~~~ 195 (279)
.++.+|||||||+|.++..+++..++.++|+++|+++. .+.. .++++++|+.+. ++.+......++
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~-~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIV-GVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCC-CcEEEecCCCChHHHHHHHHHhCCCC
Confidence 45679999999999999999998865689999999981 1222 489999998763 333222222578
Q ss_pred EEEEEEeCCcc-------c-------hHHHHHHHHccCCCCcEEEEe
Q 023645 196 YDFAFVDAEKR-------M-------YQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 196 fDlI~id~~~~-------~-------~~~~l~~~~~~Lk~gG~lv~d 228 (279)
||+|+++.... + ....++.+.++|+|||.+++.
T Consensus 118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 99999875311 1 135788889999999999995
No 123
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.29 E-value=1.6e-11 Score=101.12 Aligned_cols=141 Identities=16% Similarity=0.204 Sum_probs=90.1
Q ss_pred CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (279)
Q Consensus 121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~ 200 (279)
.++||+|||.|.+|..|+... .+++++|+++.+++.|++.... .. +|++++++..+..+ .++||+|+
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~--~~-~V~~~~~dvp~~~P-------~~~FDLIV 111 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG--LP-HVEWIQADVPEFWP-------EGRFDLIV 111 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---S-SEEEEES-TTT----------SS-EEEEE
T ss_pred ceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC--CC-CeEEEECcCCCCCC-------CCCeeEEE
Confidence 589999999999999999875 4999999999999999998864 33 59999999987655 68999999
Q ss_pred EeCC------ccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCccc-CChhhHH-HHHHHHHhhhCCCeEEEEeecCCc
Q 023645 201 VDAE------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMV-NDAKTIS-IRNFNKNLMEDERVSISMVPIGDG 272 (279)
Q Consensus 201 id~~------~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~-~~~~~~~-~~~~~~~l~~~~~~~~~~lp~~~G 272 (279)
+... ......++..+...|+|||.+|+-... ..... .+ +...... +.-|.+.+.+=.++++---..+..
T Consensus 112 ~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r--d~~c~-~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~~~~~ 188 (201)
T PF05401_consen 112 LSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR--DANCR-RWGHAAGAETVLEMLQEHLTEVERVECRGGSPNED 188 (201)
T ss_dssp EES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE---HHHHH-HTT-S--HHHHHHHHHHHSEEEEEEEEE-SSTTSE
T ss_pred EehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec--CCccc-ccCcccchHHHHHHHHHHhhheeEEEEcCCCCCCc
Confidence 8743 234566888899999999999994431 11110 11 1112222 244566665555555444444445
Q ss_pred eEEEE
Q 023645 273 MTICQ 277 (279)
Q Consensus 273 ~~i~~ 277 (279)
-.+++
T Consensus 189 ~~~~~ 193 (201)
T PF05401_consen 189 CLLAR 193 (201)
T ss_dssp EEEEE
T ss_pred eEeee
Confidence 45554
No 124
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.29 E-value=7.6e-11 Score=110.93 Aligned_cols=123 Identities=16% Similarity=0.191 Sum_probs=93.2
Q ss_pred CCCCCCHHHHHHHH-HHHh---hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEE
Q 023645 99 SQMQVSPDQAQLLA-MLVQ---ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174 (279)
Q Consensus 99 ~~~~~~~~~~~~l~-~l~~---~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~ 174 (279)
.+.++++...+.+. .+.. ..++.+|||+|||+|..++.+++.. .+|+++|+|+++++.|+++++.+++. +++
T Consensus 273 ~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~-~v~ 348 (443)
T PRK13168 273 DFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLD-NVT 348 (443)
T ss_pred CeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCC-ceE
Confidence 34466666544333 3332 3456799999999999999999874 59999999999999999999988886 499
Q ss_pred EEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645 175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 175 ~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
++++|+.+.+..... .+++||+|++|++.......++.+.+ ++|++++++.
T Consensus 349 ~~~~d~~~~l~~~~~--~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 349 FYHANLEEDFTDQPW--ALGGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred EEEeChHHhhhhhhh--hcCCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEE
Confidence 999999875532110 13579999999987776677766655 6888888874
No 125
>PTZ00146 fibrillarin; Provisional
Probab=99.28 E-value=8.4e-11 Score=103.37 Aligned_cols=104 Identities=15% Similarity=0.129 Sum_probs=78.0
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHH--HHHHhCCCCC
Q 023645 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILNGEAS 194 (279)
Q Consensus 117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l--~~~~~~~~~~ 194 (279)
+.+..+|||+|||+|+++..++..+.+.++|+++|+++.+.+...+..+. ..++.++.+|+.... ... .+
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~---r~NI~~I~~Da~~p~~y~~~-----~~ 201 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK---RPNIVPIIEDARYPQKYRML-----VP 201 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh---cCCCEEEECCccChhhhhcc-----cC
Confidence 45678999999999999999999987678999999998766444443332 135888999986421 111 35
Q ss_pred cEEEEEEeCCccch-HHHHHHHHccCCCCcEEEEe
Q 023645 195 SYDFAFVDAEKRMY-QEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 195 ~fDlI~id~~~~~~-~~~l~~~~~~Lk~gG~lv~d 228 (279)
.||+||+|....+. ..++..+.++|||||.+++.
T Consensus 202 ~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 202 MVDVIFADVAQPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence 79999999864443 34556788999999999993
No 126
>PLN02823 spermine synthase
Probab=99.28 E-value=3.6e-11 Score=108.57 Aligned_cols=105 Identities=14% Similarity=0.234 Sum_probs=85.5
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhC---CCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG---VSHKVKIKHGLAADSLKALILNGEAS 194 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g---~~~~v~~~~gd~~~~l~~~~~~~~~~ 194 (279)
..+++||.||+|.|..+.++++..+ ..+|+.+|++++.++.|++++...+ ..++++++.+|+..++... .+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~-----~~ 175 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR-----DE 175 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC-----CC
Confidence 3678999999999999998887543 4689999999999999999986432 2468999999999988653 57
Q ss_pred cEEEEEEeCCcc---------chHHHHH-HHHccCCCCcEEEEe
Q 023645 195 SYDFAFVDAEKR---------MYQEYFE-LLLQLIRVGGIIVID 228 (279)
Q Consensus 195 ~fDlI~id~~~~---------~~~~~l~-~~~~~Lk~gG~lv~d 228 (279)
+||+||+|.... ...++++ .+.+.|+|||++++.
T Consensus 176 ~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 176 KFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred CccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 899999995321 1346787 889999999999885
No 127
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.28 E-value=3.5e-11 Score=106.11 Aligned_cols=94 Identities=22% Similarity=0.226 Sum_probs=73.5
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCC--CEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPES--GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~~--~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
...+|||+|||+|..+..+++.++.. ..++|+|+|+.+++.|++.. .++.+.++|+.+. +. .+++|
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~l-p~-----~~~sf 152 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRL-PF-----ADQSL 152 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccC-CC-----cCCce
Confidence 44689999999999999999877532 47999999999999987653 2478888888653 21 15789
Q ss_pred EEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
|+|+..... ..++++.+.|||||.+++-
T Consensus 153 D~I~~~~~~----~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 153 DAIIRIYAP----CKAEELARVVKPGGIVITV 180 (272)
T ss_pred eEEEEecCC----CCHHHHHhhccCCCEEEEE
Confidence 999975443 2357889999999999974
No 128
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.28 E-value=5.1e-11 Score=104.57 Aligned_cols=105 Identities=16% Similarity=0.254 Sum_probs=77.5
Q ss_pred CCCEEEEEcCccCH----HHHHHHHHCCC----CCEEEEEeCChhHHHHHHHHHH----HhC------------------
Q 023645 119 GAQRCIEVGVYTGY----SSLAIALVLPE----SGCLVACERDARSLEVAKKYYE----RAG------------------ 168 (279)
Q Consensus 119 ~~~~VLEiG~G~G~----~t~~la~~~~~----~~~v~~iD~s~~~~~~a~~~~~----~~g------------------ 168 (279)
++.+|+|+|||+|. .++.+++..+. +.+|+|+|+|+.+++.|++..- ..+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999996 45556665442 4689999999999999987531 001
Q ss_pred ----CCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeC
Q 023645 169 ----VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDN 229 (279)
Q Consensus 169 ----~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd 229 (279)
+.++|+|.++|..+.... .++||+|++... .......++.+.+.|+|||++++-.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~------~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPP------LGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCc------cCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 224689999998764221 478999998643 2345578999999999999999853
No 129
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.27 E-value=5.7e-11 Score=95.97 Aligned_cols=108 Identities=20% Similarity=0.332 Sum_probs=85.8
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI 199 (279)
+.+|||+|||.|.....+++.-= .+.++|+|.++++++.|+...++.++.+.|+|.+.|..+. ... .++||+|
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~-----~~qfdlv 140 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFL-----SGQFDLV 140 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-ccc-----ccceeEE
Confidence 34999999999999999887522 3569999999999999999999999999999999998753 122 5778877
Q ss_pred EE---------eCC--ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645 200 FV---------DAE--KRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234 (279)
Q Consensus 200 ~i---------d~~--~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g 234 (279)
.- .+. ......|+..+.++|+|||+++|..+.|.-
T Consensus 141 lDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~ 186 (227)
T KOG1271|consen 141 LDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTK 186 (227)
T ss_pred eecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccH
Confidence 52 111 222356788888999999999999998864
No 130
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.26 E-value=9.4e-11 Score=100.06 Aligned_cols=100 Identities=15% Similarity=0.167 Sum_probs=80.2
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
..++.+|||+|||+|..+..++.. +.+|+|+|+++++++.|++++...+..+++++.++|+.+. .++|
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---------~~~f 120 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL---------CGEF 120 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC---------CCCc
Confidence 345789999999999999999874 4699999999999999999998777666799999998643 3689
Q ss_pred EEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEe
Q 023645 197 DFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 197 DlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
|+|++... .......+..+.+++++++++.+.
T Consensus 121 D~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 121 DIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred CEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 99986432 233556788888888887777764
No 131
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.26 E-value=4e-11 Score=113.83 Aligned_cols=110 Identities=18% Similarity=0.249 Sum_probs=83.2
Q ss_pred HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH-HHHHHhCC
Q 023645 113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS-LKALILNG 191 (279)
Q Consensus 113 ~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~-l~~~~~~~ 191 (279)
..+...++.+|||||||+|..+..+++.. .+|+++|+++++++.+++. .+...+++++++|+.+. ++ +
T Consensus 31 ~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~-~---- 99 (475)
T PLN02336 31 SLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLN-I---- 99 (475)
T ss_pred hhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccC-C----
Confidence 33344456799999999999999999863 5999999999999877653 23334689999998532 11 1
Q ss_pred CCCcEEEEEEeCCc-----cchHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645 192 EASSYDFAFVDAEK-----RMYQEYFELLLQLIRVGGIIVIDNVLWH 233 (279)
Q Consensus 192 ~~~~fDlI~id~~~-----~~~~~~l~~~~~~Lk~gG~lv~dd~~~~ 233 (279)
.+++||+|++.... .....+++.+.+.|+|||++++.+..+.
T Consensus 100 ~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~ 146 (475)
T PLN02336 100 SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFH 146 (475)
T ss_pred CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCC
Confidence 14789999987542 2256789999999999999999876654
No 132
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.25 E-value=1e-10 Score=99.72 Aligned_cols=114 Identities=16% Similarity=0.123 Sum_probs=81.8
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCC------------
Q 023645 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV------------ 169 (279)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~------------ 169 (279)
..++...+++..+ ...++.+|||+|||.|..+++||+. +.+|+|+|+++.+++.+.+ +.++
T Consensus 21 ~p~~~L~~~~~~~-~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~ 93 (218)
T PRK13255 21 EVNPLLQKYWPAL-ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEH 93 (218)
T ss_pred CCCHHHHHHHHhh-CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccc
Confidence 3444444444332 1234569999999999999999975 6799999999999987642 2222
Q ss_pred --CCcEEEEEcChhhHHHHHHhCCCCCcEEEEEE-----eCCccchHHHHHHHHccCCCCcEEEE
Q 023645 170 --SHKVKIKHGLAADSLKALILNGEASSYDFAFV-----DAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 170 --~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~i-----d~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
..+|++.++|+.+..+.. .+.||+|+- ..+.+....+++.+.++|+|||++++
T Consensus 94 ~~~~~v~~~~~D~~~l~~~~-----~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 94 YQAGEITIYCGDFFALTAAD-----LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred cccCceEEEECcccCCCccc-----CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 246899999998753321 368999983 33455677899999999999986444
No 133
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.25 E-value=1.8e-10 Score=108.10 Aligned_cols=121 Identities=18% Similarity=0.217 Sum_probs=91.3
Q ss_pred CCCCCHHHHHHHH-HHHh---hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEE
Q 023645 100 QMQVSPDQAQLLA-MLVQ---ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI 175 (279)
Q Consensus 100 ~~~~~~~~~~~l~-~l~~---~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~ 175 (279)
+.+.++...+.+. .+.. ..++.+|||+|||+|..++.+++.. .+|+++|+++++++.|+++++.+++. ++++
T Consensus 269 F~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~ 344 (431)
T TIGR00479 269 FFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIA-NVEF 344 (431)
T ss_pred eeecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCC-ceEE
Confidence 4455555544333 2222 3456799999999999999999863 58999999999999999999998875 5999
Q ss_pred EEcChhhHHHHHHhCCCCCcEEEEEEeCCccc-hHHHHHHHHccCCCCcEEEE
Q 023645 176 KHGLAADSLKALILNGEASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 176 ~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~-~~~~l~~~~~~Lk~gG~lv~ 227 (279)
+.+|+.+.++.+... ..+||+|++|++... ...+++.+. .++|++++++
T Consensus 345 ~~~d~~~~l~~~~~~--~~~~D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyv 394 (431)
T TIGR00479 345 LAGTLETVLPKQPWA--GQIPDVLLLDPPRKGCAAEVLRTII-ELKPERIVYV 394 (431)
T ss_pred EeCCHHHHHHHHHhc--CCCCCEEEECcCCCCCCHHHHHHHH-hcCCCEEEEE
Confidence 999998766543211 357999999998655 566666655 4789888776
No 134
>PRK03612 spermidine synthase; Provisional
Probab=99.25 E-value=3.8e-11 Score=114.94 Aligned_cols=106 Identities=19% Similarity=0.300 Sum_probs=84.6
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHH--HHHh---CC-CCcEEEEEcChhhHHHHHHhCC
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKY--YERA---GV-SHKVKIKHGLAADSLKALILNG 191 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~--~~~~---g~-~~~v~~~~gd~~~~l~~~~~~~ 191 (279)
.++++|||||||+|..+..+++. +...+++++|+++++++.++++ +... .+ +++++++.+|+.+.+...
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~---- 370 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL---- 370 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC----
Confidence 46789999999999999998874 4237999999999999999994 3321 12 357999999999877654
Q ss_pred CCCcEEEEEEeCCccc--------hHHHHHHHHccCCCCcEEEEeC
Q 023645 192 EASSYDFAFVDAEKRM--------YQEYFELLLQLIRVGGIIVIDN 229 (279)
Q Consensus 192 ~~~~fDlI~id~~~~~--------~~~~l~~~~~~Lk~gG~lv~dd 229 (279)
.++||+|++|..... ..++++.+.+.|+|||++++..
T Consensus 371 -~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 371 -AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred -CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 578999999965221 3468899999999999999864
No 135
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.24 E-value=1.7e-10 Score=98.61 Aligned_cols=103 Identities=20% Similarity=0.245 Sum_probs=83.3
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl 198 (279)
.+.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++...+.. ++++..+|+.+..... .++||+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~-----~~~~D~ 115 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKG-----AKSFDV 115 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCC-----CCCccE
Confidence 4679999999999999988875 357999999999999999998876653 4889989887654321 368999
Q ss_pred EEEeCC---ccchHHHHHHHHccCCCCcEEEEeCC
Q 023645 199 AFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV 230 (279)
Q Consensus 199 I~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~ 230 (279)
|++... ..+....++.+.+.|+|||++++...
T Consensus 116 i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 116 VTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred EEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 998643 44567889999999999999998654
No 136
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.24 E-value=1.1e-10 Score=97.80 Aligned_cols=101 Identities=23% Similarity=0.355 Sum_probs=84.9
Q ss_pred EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEE
Q 023645 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201 (279)
Q Consensus 122 ~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~i 201 (279)
.+||||||.|.+.+.+|...| +..++|+|+....+..+.+.+...++.+ +.++++|+...+..+.. ++++|.|++
T Consensus 20 l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~---~~~v~~i~i 94 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLFP---PGSVDRIYI 94 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHST---TTSEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhccc---CCchheEEE
Confidence 899999999999999999988 7899999999999999999999999875 99999999988877753 478999988
Q ss_pred eCC---c--c------chHHHHHHHHccCCCCcEEEE
Q 023645 202 DAE---K--R------MYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 202 d~~---~--~------~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
..+ . . -...+++.+.+.|+|||.|.+
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~ 131 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYF 131 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence 643 1 1 257899999999999999877
No 137
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.23 E-value=1.2e-10 Score=97.00 Aligned_cols=103 Identities=15% Similarity=0.196 Sum_probs=74.4
Q ss_pred HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCC
Q 023645 114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG 191 (279)
Q Consensus 114 l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~ 191 (279)
+....++.+|||+|||+|..+..++......++|+++|+++.+ .. .+++++++|+.+. ++.+....
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~ 94 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERV 94 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHh
Confidence 3444677899999999999999999887546799999999864 12 2478888887542 12221111
Q ss_pred CCCcEEEEEEeCCc--------c------chHHHHHHHHccCCCCcEEEEe
Q 023645 192 EASSYDFAFVDAEK--------R------MYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 192 ~~~~fDlI~id~~~--------~------~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
..++||+|+++... . .....++.+.+.|+|||.+++.
T Consensus 95 ~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 95 GDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred CCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 24689999997531 0 1256788899999999999985
No 138
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.23 E-value=2.2e-10 Score=107.68 Aligned_cols=128 Identities=22% Similarity=0.277 Sum_probs=101.2
Q ss_pred CCCHHHHHHHHHHH--hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC
Q 023645 102 QVSPDQAQLLAMLV--QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 179 (279)
Q Consensus 102 ~~~~~~~~~l~~l~--~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd 179 (279)
.++.....+...++ ...++.+|||+++|.|.-|..++..++..+.|+++|+++..++..++++++.|+.+ +.+...|
T Consensus 94 yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v~~~D 172 (470)
T PRK11933 94 YIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VALTHFD 172 (470)
T ss_pred EEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCc
Confidence 34444555555555 55678899999999999999999998767899999999999999999999999975 8888899
Q ss_pred hhhHHHHHHhCCCCCcEEEEEEeCCccc-------------------------hHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645 180 AADSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIVIDNVLWHG 234 (279)
Q Consensus 180 ~~~~l~~~~~~~~~~~fDlI~id~~~~~-------------------------~~~~l~~~~~~Lk~gG~lv~dd~~~~g 234 (279)
+....... .+.||.|++|++... ..+.++.+.++|||||+||...+.+.-
T Consensus 173 ~~~~~~~~-----~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 173 GRVFGAAL-----PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred hhhhhhhc-----hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 86543333 467999999976220 245777888999999999998776654
Q ss_pred c
Q 023645 235 K 235 (279)
Q Consensus 235 ~ 235 (279)
.
T Consensus 248 e 248 (470)
T PRK11933 248 E 248 (470)
T ss_pred H
Confidence 3
No 139
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.22 E-value=1.4e-10 Score=95.09 Aligned_cols=113 Identities=12% Similarity=0.047 Sum_probs=85.6
Q ss_pred hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (279)
Q Consensus 116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~ 195 (279)
...++.+|||||||+|..+..+++. .++++++|+++.+++.+++++.. .++++++++|+.+.... +.+
T Consensus 10 ~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~------~~~ 77 (169)
T smart00650 10 NLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLP------KLQ 77 (169)
T ss_pred CCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCcc------ccC
Confidence 3445679999999999999999986 46999999999999999998853 34699999999875321 346
Q ss_pred EEEEEEeCCccchHHHHHHHHcc--CCCCcEEEEeCCCCCCcccCcc
Q 023645 196 YDFAFVDAEKRMYQEYFELLLQL--IRVGGIIVIDNVLWHGKVADQM 240 (279)
Q Consensus 196 fDlI~id~~~~~~~~~l~~~~~~--Lk~gG~lv~dd~~~~g~~~~~~ 240 (279)
||.|+.+.+.......+..+... +.++|++++..-........|.
T Consensus 78 ~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~~~~~ 124 (169)
T smart00650 78 PYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLAAKPG 124 (169)
T ss_pred CCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHhHHhcCCCC
Confidence 99999998766555666666533 4588999987665544444443
No 140
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.22 E-value=2.5e-10 Score=97.84 Aligned_cols=98 Identities=20% Similarity=0.222 Sum_probs=75.4
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
.++.+|||||||+|..+..+++. +.+|+++|+++.+++.|++++...+..+++++..+|.. . . .++||
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~-~---~-----~~~fD 129 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE-S---L-----LGRFD 129 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch-h---c-----cCCcC
Confidence 45679999999999999999875 35799999999999999999988877667999999842 1 1 47899
Q ss_pred EEEEeCC-----ccchHHHHHHHHccCCCCcEEEE
Q 023645 198 FAFVDAE-----KRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 198 lI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
+|++... .......++.+.+.+++++++.+
T Consensus 130 ~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 130 TVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred EEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 9987543 22345567777776655555443
No 141
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.21 E-value=1.5e-10 Score=101.38 Aligned_cols=117 Identities=17% Similarity=0.211 Sum_probs=84.7
Q ss_pred HHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhC
Q 023645 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 190 (279)
Q Consensus 111 l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~ 190 (279)
+...+....+++|||||||.|+.+..|+..-+ ..|+|+|.++...-..+-.-+-.|....+.+. ....+.++.
T Consensus 107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~l-plgvE~Lp~---- 179 (315)
T PF08003_consen 107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFEL-PLGVEDLPN---- 179 (315)
T ss_pred HHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHHHHHHhCCCccEEEc-Ccchhhccc----
Confidence 33344456789999999999999999998743 57999999998765544433333444333333 223334443
Q ss_pred CCCCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCCcc
Q 023645 191 GEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKV 236 (279)
Q Consensus 191 ~~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~ 236 (279)
.+.||+||+-+. ..+....+..+...|++||.+|++..+..|.-
T Consensus 180 --~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~ 226 (315)
T PF08003_consen 180 --LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDE 226 (315)
T ss_pred --cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCC
Confidence 378999998775 56678889999999999999999988877754
No 142
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.21 E-value=2.1e-10 Score=97.93 Aligned_cols=102 Identities=20% Similarity=0.297 Sum_probs=88.2
Q ss_pred CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (279)
Q Consensus 121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~ 200 (279)
..+||||||.|.+...+|...| +..++|||+....+..|.+.+.+.++. ++.++++|+.+.+..+.. +++.|-|+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~---~~sl~~I~ 124 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIP---DGSLDKIY 124 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCC---CCCeeEEE
Confidence 4799999999999999999988 679999999999999999999999997 599999999998888753 34788887
Q ss_pred Ee---CCcc--------chHHHHHHHHccCCCCcEEEE
Q 023645 201 VD---AEKR--------MYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 201 id---~~~~--------~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
+. +++. -+..+++.+.+.|+|||.|.+
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~ 162 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHF 162 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEE
Confidence 64 4411 167899999999999999987
No 143
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.21 E-value=1e-10 Score=96.43 Aligned_cols=101 Identities=19% Similarity=0.179 Sum_probs=79.7
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEE-EEEcChhhHHHHHHhCCCCCcEEE
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK-IKHGLAADSLKALILNGEASSYDF 198 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~-~~~gd~~~~l~~~~~~~~~~~fDl 198 (279)
...|||+|||||..-.+.-- .+..+||++|.++.|-+.+.+.+.+....+ +. |++++..+ ++++. ++++|.
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~~~-~~~fvva~ge~-l~~l~----d~s~Dt 148 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKPLQ-VERFVVADGEN-LPQLA----DGSYDT 148 (252)
T ss_pred ccceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccCcc-eEEEEeechhc-Ccccc----cCCeee
Confidence 34689999999976543321 147899999999999999999988875544 65 99998864 44442 789999
Q ss_pred EEEe---CCccchHHHHHHHHccCCCCcEEEEe
Q 023645 199 AFVD---AEKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 199 I~id---~~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
|++. +..++..+.++++.++|||||.+++=
T Consensus 149 VV~TlvLCSve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 149 VVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred EEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 9754 56788889999999999999999873
No 144
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.20 E-value=2.7e-10 Score=83.54 Aligned_cols=99 Identities=22% Similarity=0.338 Sum_probs=78.5
Q ss_pred EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEE
Q 023645 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201 (279)
Q Consensus 122 ~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~i 201 (279)
+|+|+|||.|..+..++. . ...+++++|.+++....+++..... ...++++..+|..+..... .++||+|++
T Consensus 1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~d~i~~ 72 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEA-----DESFDVIIS 72 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhcccc-----CCceEEEEE
Confidence 489999999999999887 2 3679999999999999988644433 3346899999987764311 478999999
Q ss_pred eCCcc----chHHHHHHHHccCCCCcEEEEe
Q 023645 202 DAEKR----MYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 202 d~~~~----~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
+.... ....+++.+.+.|++||.+++.
T Consensus 73 ~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 73 DPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 87633 4677889999999999999885
No 145
>PRK06202 hypothetical protein; Provisional
Probab=99.20 E-value=1.6e-10 Score=99.48 Aligned_cols=113 Identities=13% Similarity=0.141 Sum_probs=78.0
Q ss_pred HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCC---CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHH
Q 023645 109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP---ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 185 (279)
Q Consensus 109 ~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~---~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~ 185 (279)
..+.......++.+|||||||+|..+..+++..+ .+.+|+++|+++++++.|++..... ++++..+++.+. +
T Consensus 50 ~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l-~ 124 (232)
T PRK06202 50 RLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDEL-V 124 (232)
T ss_pred HHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccc-c
Confidence 3333333445677999999999999998886532 2459999999999999998876533 245555544322 2
Q ss_pred HHHhCCCCCcEEEEEEeCCcc-----chHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645 186 ALILNGEASSYDFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLWH 233 (279)
Q Consensus 186 ~~~~~~~~~~fDlI~id~~~~-----~~~~~l~~~~~~Lk~gG~lv~dd~~~~ 233 (279)
.. +++||+|++....+ ....+++++.++++ |.+++.+...+
T Consensus 125 ~~-----~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 125 AE-----GERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred cc-----CCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 11 57899999875422 23468889989887 56677676654
No 146
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.18 E-value=7.2e-10 Score=101.62 Aligned_cols=125 Identities=19% Similarity=0.153 Sum_probs=92.0
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcC--CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcE
Q 023645 97 RGSQMQVSPDQAQLLAMLV-QILG--AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV 173 (279)
Q Consensus 97 ~~~~~~~~~~~~~~l~~l~-~~~~--~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v 173 (279)
+.++.++++.+.+.+...+ .... +.+|||++||+|.+++.+++.. .+|+++|.++.+++.|++|++.+++. ++
T Consensus 181 ~~sF~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~-~v 256 (362)
T PRK05031 181 ENSFTQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGID-NV 256 (362)
T ss_pred CCCeeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCC-cE
Confidence 3556777777665555443 3222 3579999999999999999874 48999999999999999999998886 59
Q ss_pred EEEEcChhhHHHHHHhCCC----------CCcEEEEEEeCCccc-hHHHHHHHHccCCCCcEEEEe
Q 023645 174 KIKHGLAADSLKALILNGE----------ASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 174 ~~~~gd~~~~l~~~~~~~~----------~~~fDlI~id~~~~~-~~~~l~~~~~~Lk~gG~lv~d 228 (279)
+++.+|+.+.++.+..... ..+||+||+|++... ....++.+.+ +++++++.
T Consensus 257 ~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 257 QIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA---YERILYIS 319 (362)
T ss_pred EEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEEEE
Confidence 9999999887765432110 125899999998655 3445555544 67777663
No 147
>PHA03412 putative methyltransferase; Provisional
Probab=99.18 E-value=4.9e-10 Score=95.50 Aligned_cols=123 Identities=13% Similarity=0.117 Sum_probs=86.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCC--CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE
Q 023645 100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP--ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH 177 (279)
Q Consensus 100 ~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~--~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~ 177 (279)
...++...+..+. .....+.+|||+|||+|..++.+++.++ +..+|+++|+++.+++.|+++.. ++.+++
T Consensus 32 qFfTP~~iAr~~~--i~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~ 103 (241)
T PHA03412 32 AFFTPIGLARDFT--IDACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWIN 103 (241)
T ss_pred ccCCCHHHHHHHH--HhccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEE
Confidence 3444555544432 2233467999999999999999988653 24699999999999999998753 378999
Q ss_pred cChhhHHHHHHhCCCCCcEEEEEEeCCcc-----c----------hHHHHHHHHccCCCCcEEEEeCCC---CCCccc
Q 023645 178 GLAADSLKALILNGEASSYDFAFVDAEKR-----M----------YQEYFELLLQLIRVGGIIVIDNVL---WHGKVA 237 (279)
Q Consensus 178 gd~~~~l~~~~~~~~~~~fDlI~id~~~~-----~----------~~~~l~~~~~~Lk~gG~lv~dd~~---~~g~~~ 237 (279)
+|+.... . +++||+|+.+++.. + ...+++.+.+++++|+.|+=.+++ ++|...
T Consensus 104 ~D~~~~~--~-----~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~~~~y~~~~~ 174 (241)
T PHA03412 104 ADALTTE--F-----DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSANFRYSGTHY 174 (241)
T ss_pred cchhccc--c-----cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcccccCcccCccc
Confidence 9986532 1 46899999987611 1 334677778888888875544443 555543
No 148
>PLN02672 methionine S-methyltransferase
Probab=99.16 E-value=5.4e-10 Score=113.34 Aligned_cols=103 Identities=16% Similarity=0.122 Sum_probs=81.6
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCC---------------CCcEEEEEcChhhHH
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV---------------SHKVKIKHGLAADSL 184 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~---------------~~~v~~~~gd~~~~l 184 (279)
+.+|||+|||+|..++.++...+ ..+|+++|+|+++++.|++|.+.+++ .++++++++|..+.+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 46899999999999999999876 57999999999999999999987643 257999999998655
Q ss_pred HHHHhCCCCCcEEEEEEeCCc----------------c---------------------c----hHHHHHHHHccCCCCc
Q 023645 185 KALILNGEASSYDFAFVDAEK----------------R---------------------M----YQEYFELLLQLIRVGG 223 (279)
Q Consensus 185 ~~~~~~~~~~~fDlI~id~~~----------------~---------------------~----~~~~l~~~~~~Lk~gG 223 (279)
... ..+||+|+.+.+. + + +...++.+.++|+|||
T Consensus 198 ~~~-----~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG 272 (1082)
T PLN02672 198 RDN-----NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMG 272 (1082)
T ss_pred ccc-----CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCC
Confidence 321 2479999987540 0 0 1345566668999999
Q ss_pred EEEEe
Q 023645 224 IIVID 228 (279)
Q Consensus 224 ~lv~d 228 (279)
.+++.
T Consensus 273 ~l~lE 277 (1082)
T PLN02672 273 IMIFN 277 (1082)
T ss_pred EEEEE
Confidence 99985
No 149
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.15 E-value=1.9e-09 Score=94.94 Aligned_cols=104 Identities=21% Similarity=0.316 Sum_probs=89.3
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhC--C-CCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V-SHKVKIKHGLAADSLKALILNGEASS 195 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~-~~~v~~~~gd~~~~l~~~~~~~~~~~ 195 (279)
.+++||-||-|.|..+..+++..+ -.+++.+|+++..++.+++.+.... . ..|++++.+|..+++... ..+
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~-----~~~ 149 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC-----EEK 149 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC-----CCc
Confidence 447999999999999999998765 5799999999999999999987543 2 378999999999998875 458
Q ss_pred EEEEEEeCCcc-c------hHHHHHHHHccCCCCcEEEEe
Q 023645 196 YDFAFVDAEKR-M------YQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 196 fDlI~id~~~~-~------~~~~l~~~~~~Lk~gG~lv~d 228 (279)
||+|++|.... . ..++++.+.+.|+++|+++..
T Consensus 150 fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 150 FDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 99999997522 2 478999999999999999996
No 150
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=99.15 E-value=3e-10 Score=94.77 Aligned_cols=159 Identities=16% Similarity=0.172 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHH---CCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC
Q 023645 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALV---LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 179 (279)
Q Consensus 103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~---~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd 179 (279)
-.|...-.+..++...+|+.|+|+|...|.+++++|+. +...++|+|||++..... ++.++...+.++|++++||
T Consensus 16 q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~Gd 93 (206)
T PF04989_consen 16 QYPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQGD 93 (206)
T ss_dssp S-HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-
T ss_pred cCHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEECC
Confidence 35666667778888889999999999999999998764 444789999999654321 2333445667899999999
Q ss_pred hhhH--HHHHHhCCCCCcEEEEEEeCC--ccchHHHHHHHHccCCCCcEEEEeCCCCCCcccC----cccCChhhHHHHH
Q 023645 180 AADS--LKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD----QMVNDAKTISIRN 251 (279)
Q Consensus 180 ~~~~--l~~~~~~~~~~~fDlI~id~~--~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~----~~~~~~~~~~~~~ 251 (279)
..+. +......-......+|+.|+. +.+....|+...+++++|+++|+.|..+...... +.+.. .......
T Consensus 94 s~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~-g~~p~~a 172 (206)
T PF04989_consen 94 SIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGP-GNNPKTA 172 (206)
T ss_dssp SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS--------------HHH
T ss_pred CCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhh-hhHHHHH
Confidence 8653 222211111345678888876 5667888889999999999999999875443322 12211 1112344
Q ss_pred HHHHhhhCCCeEE
Q 023645 252 FNKNLMEDERVSI 264 (279)
Q Consensus 252 ~~~~l~~~~~~~~ 264 (279)
..++|.++++|+.
T Consensus 173 v~~fL~~~~~f~i 185 (206)
T PF04989_consen 173 VKEFLAEHPDFEI 185 (206)
T ss_dssp HHHHHHTTTTEEE
T ss_pred HHHHHHHCCCcEe
Confidence 4455567787654
No 151
>PRK05785 hypothetical protein; Provisional
Probab=99.14 E-value=3.3e-10 Score=97.24 Aligned_cols=88 Identities=13% Similarity=0.061 Sum_probs=70.1
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl 198 (279)
++.+|||+|||+|..+..+++.. +++|+|+|+|++|++.|++. ..++++|+.+. +. .+++||+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~l-p~-----~d~sfD~ 113 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA---------DDKVVGSFEAL-PF-----RDKSFDV 113 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc---------cceEEechhhC-CC-----CCCCEEE
Confidence 46799999999999999998875 46999999999999998763 13467787643 21 2689999
Q ss_pred EEEeCC---ccchHHHHHHHHccCCCCc
Q 023645 199 AFVDAE---KRMYQEYFELLLQLIRVGG 223 (279)
Q Consensus 199 I~id~~---~~~~~~~l~~~~~~Lk~gG 223 (279)
|++... ..+....++++.+.|||.+
T Consensus 114 v~~~~~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 114 VMSSFALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred EEecChhhccCCHHHHHHHHHHHhcCce
Confidence 998654 4567789999999999953
No 152
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=3.8e-10 Score=96.64 Aligned_cols=123 Identities=18% Similarity=0.196 Sum_probs=98.4
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEE
Q 023645 96 MRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI 175 (279)
Q Consensus 96 ~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~ 175 (279)
+++....+......++.+.++..++.+|+|-|+|+|..+.++++++.+.|+++.+|.++...+.|.+.+++.++.+++++
T Consensus 82 LphRTQI~Yt~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~ 161 (314)
T KOG2915|consen 82 LPHRTQILYTPDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTV 161 (314)
T ss_pred ccCcceEEecccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEE
Confidence 45444455666667778888999999999999999999999999998899999999999999999999999999999999
Q ss_pred EEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcE
Q 023645 176 KHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGI 224 (279)
Q Consensus 176 ~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~ 224 (279)
.+.|+...-... .+..+|.||+|.+..+ ..+..+.+.||.+|.
T Consensus 162 ~hrDVc~~GF~~----ks~~aDaVFLDlPaPw--~AiPha~~~lk~~g~ 204 (314)
T KOG2915|consen 162 THRDVCGSGFLI----KSLKADAVFLDLPAPW--EAIPHAAKILKDEGG 204 (314)
T ss_pred EEeecccCCccc----cccccceEEEcCCChh--hhhhhhHHHhhhcCc
Confidence 999987531111 1478999999976443 344455567777663
No 153
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.13 E-value=1.3e-09 Score=100.26 Aligned_cols=100 Identities=15% Similarity=0.232 Sum_probs=84.9
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI 199 (279)
..+|||++||+|..++.++...+ ..+|+++|+++.+++.+++|++.+++.+ +++.++|+.+.+.. ..+||+|
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~~l~~------~~~fD~V 129 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANALLHE------ERKFDVV 129 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHHHHhh------cCCCCEE
Confidence 35899999999999999988765 4589999999999999999999998864 78999999766542 2579999
Q ss_pred EEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645 200 FVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 200 ~id~~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
++|+. .....+++.+...+++||++.+.
T Consensus 130 ~lDP~-Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 130 DIDPF-GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred EECCC-CCcHHHHHHHHHHhcCCCEEEEE
Confidence 99975 44567888888889999999996
No 154
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=4.2e-09 Score=86.06 Aligned_cols=115 Identities=18% Similarity=0.281 Sum_probs=83.2
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
..+++|+|+|||||.+++..+..-+ .+|+|+|+++++++.+++|.++ +..++.|+.+|+.+. .+++|
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~---------~~~~d 110 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDF---------RGKFD 110 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhc---------CCccc
Confidence 4677999999999999998776533 6999999999999999999998 445699999999765 68899
Q ss_pred EEEEeCCc-----cchHHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEE
Q 023645 198 FAFVDAEK-----RMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSI 264 (279)
Q Consensus 198 lI~id~~~-----~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 264 (279)
.+++|++. +.-..+++.+++.- ..+.-+++. | .++|.+....+-+..+
T Consensus 111 tvimNPPFG~~~rhaDr~Fl~~Ale~s--~vVYsiH~a---~--------------~~~f~~~~~~~~G~~v 163 (198)
T COG2263 111 TVIMNPPFGSQRRHADRPFLLKALEIS--DVVYSIHKA---G--------------SRDFVEKFAADLGGTV 163 (198)
T ss_pred eEEECCCCccccccCCHHHHHHHHHhh--heEEEeecc---c--------------cHHHHHHHHHhcCCeE
Confidence 99999872 22234566665542 122222222 1 3678777766666443
No 155
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.11 E-value=2.3e-09 Score=97.95 Aligned_cols=124 Identities=19% Similarity=0.135 Sum_probs=90.1
Q ss_pred CCCCCCCHHHHHHHH-HHHhhcC--CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEE
Q 023645 98 GSQMQVSPDQAQLLA-MLVQILG--AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174 (279)
Q Consensus 98 ~~~~~~~~~~~~~l~-~l~~~~~--~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~ 174 (279)
.++.+++....+.+. .+.+... +.+|||+|||+|.+++.+++.. .+|+++|+++++++.|+++++.+++.+ ++
T Consensus 173 ~~F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~-v~ 248 (353)
T TIGR02143 173 NSFTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDN-VQ 248 (353)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCc-EE
Confidence 445667776655444 3334332 3579999999999999999875 489999999999999999999998864 99
Q ss_pred EEEcChhhHHHHHHhC-------C-C--CCcEEEEEEeCCccc-hHHHHHHHHccCCCCcEEEEe
Q 023645 175 IKHGLAADSLKALILN-------G-E--ASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 175 ~~~gd~~~~l~~~~~~-------~-~--~~~fDlI~id~~~~~-~~~~l~~~~~~Lk~gG~lv~d 228 (279)
++.+|+.+.++..... + . ...||+||+|++... ....++.+.+ |++++++.
T Consensus 249 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivYvs 310 (353)
T TIGR02143 249 IIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA---YERILYIS 310 (353)
T ss_pred EEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEEEE
Confidence 9999998877542110 0 0 124899999998555 3455565544 67777773
No 156
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.10 E-value=8.9e-10 Score=92.39 Aligned_cols=100 Identities=20% Similarity=0.265 Sum_probs=77.7
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
.++..|+|+.||.|.+++.+++..+ ..+|+++|++|.+++..+++++.+++.+++.++++|+.+.++ ...||
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-------~~~~d 171 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-------EGKFD 171 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----------TT-EE
T ss_pred CcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-------ccccC
Confidence 4577999999999999999998543 579999999999999999999999999999999999988776 47899
Q ss_pred EEEEeCCccchHHHHHHHHccCCCCcEEE
Q 023645 198 FAFVDAEKRMYQEYFELLLQLIRVGGIIV 226 (279)
Q Consensus 198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv 226 (279)
-|+++.+.... .++..+..++++||++-
T Consensus 172 rvim~lp~~~~-~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 172 RVIMNLPESSL-EFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEE--TSSGG-GGHHHHHHHEEEEEEEE
T ss_pred EEEECChHHHH-HHHHHHHHHhcCCcEEE
Confidence 99998764443 68889999999999875
No 157
>PHA03411 putative methyltransferase; Provisional
Probab=99.06 E-value=1.5e-09 Score=94.64 Aligned_cols=97 Identities=9% Similarity=0.038 Sum_probs=74.3
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
.....+|||+|||+|..+..++...+ ..+|+++|+++.+++.+++++. +++++++|+.+... ..+|
T Consensus 62 ~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~~------~v~~v~~D~~e~~~-------~~kF 127 (279)
T PHA03411 62 AHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLLP------EAEWITSDVFEFES-------NEKF 127 (279)
T ss_pred cccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCc------CCEEEECchhhhcc-------cCCC
Confidence 33456999999999999998887654 4699999999999999988642 48899999986532 4689
Q ss_pred EEEEEeCCccc-----------------------hHHHHHHHHccCCCCcEEEE
Q 023645 197 DFAFVDAEKRM-----------------------YQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 197 DlI~id~~~~~-----------------------~~~~l~~~~~~Lk~gG~lv~ 227 (279)
|+|+++++... ...++.....+|+|+|.+.+
T Consensus 128 DlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~ 181 (279)
T PHA03411 128 DVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGF 181 (279)
T ss_pred cEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEE
Confidence 99999875211 13455555688999997655
No 158
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=99.06 E-value=1.1e-09 Score=95.07 Aligned_cols=106 Identities=21% Similarity=0.344 Sum_probs=84.8
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCC---CCcEEEEEcChhhHHHHHHhCCCCC
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV---SHKVKIKHGLAADSLKALILNGEAS 194 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~---~~~v~~~~gd~~~~l~~~~~~~~~~ 194 (279)
..+++||-||-|.|..+..+.+.. +..+++.+|+++..++.+++.+..... ++|++++.+|+..++... .+
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~-----~~ 148 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET-----QE 148 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS-----SS
T ss_pred CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc-----cC
Confidence 368899999999999999888653 357999999999999999998875432 468999999999888765 45
Q ss_pred -cEEEEEEeCCcc-------chHHHHHHHHccCCCCcEEEEeC
Q 023645 195 -SYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVIDN 229 (279)
Q Consensus 195 -~fDlI~id~~~~-------~~~~~l~~~~~~Lk~gG~lv~dd 229 (279)
+||+|++|.... ...++++.+.+.|+|||++++..
T Consensus 149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 149 EKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp T-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 899999986521 24689999999999999999864
No 159
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=3.5e-09 Score=96.73 Aligned_cols=131 Identities=19% Similarity=0.296 Sum_probs=103.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC
Q 023645 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 179 (279)
Q Consensus 101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd 179 (279)
..++....++...++...++.+|||+.++.|.=|..++..+.. +..|+++|.++..++..++++++.|..+ +.+++.|
T Consensus 138 ~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d 216 (355)
T COG0144 138 IYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKD 216 (355)
T ss_pred EEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecc
Confidence 3455666777777888888999999999999999999999874 3456999999999999999999999987 8888888
Q ss_pred hhhHHHHHHhCCCCCcEEEEEEeCCcc-------------------------chHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645 180 AADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVGGIIVIDNVLWHG 234 (279)
Q Consensus 180 ~~~~l~~~~~~~~~~~fDlI~id~~~~-------------------------~~~~~l~~~~~~Lk~gG~lv~dd~~~~g 234 (279)
+........ ..++||.|++|++.. ...+.++.++++|||||+|+...+...-
T Consensus 217 ~~~~~~~~~---~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 217 ARRLAELLP---GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred ccccccccc---ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 754332221 023699999997511 1355788888999999999999887665
Q ss_pred c
Q 023645 235 K 235 (279)
Q Consensus 235 ~ 235 (279)
.
T Consensus 294 e 294 (355)
T COG0144 294 E 294 (355)
T ss_pred h
Confidence 4
No 160
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.06 E-value=2.7e-09 Score=87.83 Aligned_cols=112 Identities=20% Similarity=0.377 Sum_probs=74.1
Q ss_pred hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhC--CCCcEEEEEcChhhHH-HHHHhCCC
Q 023645 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--VSHKVKIKHGLAADSL-KALILNGE 192 (279)
Q Consensus 116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~~~~v~~~~gd~~~~l-~~~~~~~~ 192 (279)
....+++|||+|||+|..++.++...+ ..+|+..|.++ .++..+.|++.++ ...++.+..-|..+.. +... +
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~---~ 116 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL---E 116 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH---S
T ss_pred hhcCCceEEEECCccchhHHHHHhccC-CceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc---c
Confidence 356788999999999999999998743 57999999998 9999999999876 5567888877764422 2221 1
Q ss_pred CCcEEEEEEeC---CccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645 193 ASSYDFAFVDA---EKRMYQEYFELLLQLIRVGGIIVIDNVLW 232 (279)
Q Consensus 193 ~~~fDlI~id~---~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~ 232 (279)
..+||+|+... ..+.+..+++.+.++|+++|.+++-...+
T Consensus 117 ~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 117 PHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp -SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred cccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 46899998642 35667888999999999998866654433
No 161
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.05 E-value=3.4e-09 Score=97.09 Aligned_cols=101 Identities=13% Similarity=0.162 Sum_probs=87.6
Q ss_pred CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (279)
Q Consensus 121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~ 200 (279)
.+|||+.||+|..++.++...+...+|+++|+++++++.+++|++.++.. ++++.++|+...+... ..+||+|+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~-----~~~fDvId 119 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYR-----NRKFHVID 119 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHh-----CCCCCEEE
Confidence 48999999999999999987542358999999999999999999988876 4899999998877654 46799999
Q ss_pred EeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645 201 VDAEKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 201 id~~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
+|+ ......+++.+.+.+++||+|.+.
T Consensus 120 lDP-fGs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 120 IDP-FGTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred eCC-CCCcHHHHHHHHHhcccCCEEEEE
Confidence 998 555568999999999999999986
No 162
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.04 E-value=6e-09 Score=92.71 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (279)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~ 181 (279)
.+++.....+...+...++.+|||||||+|..|..++.. ..+|+++|+++.+++.+++++...+..++++++++|+.
T Consensus 19 L~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal 95 (294)
T PTZ00338 19 LKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDAL 95 (294)
T ss_pred cCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHh
Confidence 345555444555555566789999999999999999886 35899999999999999999987776567999999997
Q ss_pred hHHHHHHhCCCCCcEEEEEEeCCccchHHH
Q 023645 182 DSLKALILNGEASSYDFAFVDAEKRMYQEY 211 (279)
Q Consensus 182 ~~l~~~~~~~~~~~fDlI~id~~~~~~~~~ 211 (279)
+.. ...||.|+.+.+..-....
T Consensus 96 ~~~--------~~~~d~VvaNlPY~Istpi 117 (294)
T PTZ00338 96 KTE--------FPYFDVCVANVPYQISSPL 117 (294)
T ss_pred hhc--------ccccCEEEecCCcccCcHH
Confidence 642 2568999988775443333
No 163
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=99.04 E-value=1e-08 Score=90.94 Aligned_cols=149 Identities=19% Similarity=0.247 Sum_probs=110.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (279)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~ 181 (279)
.+......+...++...++..|||+.++.|.-|..++..+...+.|++.|+++..+...++++++.|..+ +.+...|+.
T Consensus 68 ~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~ 146 (283)
T PF01189_consen 68 YVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADAR 146 (283)
T ss_dssp EEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHH
T ss_pred EecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeeccc
Confidence 3444555556666677788899999999999999999999878999999999999999999999999875 777778887
Q ss_pred hHHHHHHhCCCCCcEEEEEEeCCcc-------------------------chHHHHHHHHccC----CCCcEEEEeCCCC
Q 023645 182 DSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLI----RVGGIIVIDNVLW 232 (279)
Q Consensus 182 ~~l~~~~~~~~~~~fDlI~id~~~~-------------------------~~~~~l~~~~~~L----k~gG~lv~dd~~~ 232 (279)
...+... ...||.|++|++.. ...+.++.+.+++ ||||++|..-+-.
T Consensus 147 ~~~~~~~----~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 147 KLDPKKP----ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp HHHHHHH----TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred ccccccc----ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 7654442 34699999997511 1245678888999 9999999977654
Q ss_pred CCcccCcccCChhhHHHHHHHHHhhhCCCeEEEE
Q 023645 233 HGKVADQMVNDAKTISIRNFNKNLMEDERVSISM 266 (279)
Q Consensus 233 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 266 (279)
.-...+ .-++.|++ ..++++.+-
T Consensus 223 ~~eENE--------~vV~~fl~---~~~~~~l~~ 245 (283)
T PF01189_consen 223 SPEENE--------EVVEKFLK---RHPDFELVP 245 (283)
T ss_dssp HGGGTH--------HHHHHHHH---HSTSEEEEC
T ss_pred HHHHHH--------HHHHHHHH---hCCCcEEEe
Confidence 433221 13455554 567776553
No 164
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.04 E-value=7.3e-09 Score=92.90 Aligned_cols=142 Identities=16% Similarity=0.291 Sum_probs=93.6
Q ss_pred ccccccCCCChhHHHHHHhc--------cCChHHHHHHHHHHHc---------cCCCCC-CCCHHHHHHHHHHHhhc---
Q 023645 60 YSNKQVISVTPPLYDYILRN--------VREPEILRQLREETAG---------MRGSQM-QVSPDQAQLLAMLVQIL--- 118 (279)
Q Consensus 60 ~~~~~~~~~~~~l~~Y~~~~--------~~~~~~l~~~~~~~~~---------~~~~~~-~~~~~~~~~l~~l~~~~--- 118 (279)
|.........|++..|+... ...++.+.++-+.-.. .|.... ..-|.-..++..+.+..
T Consensus 26 ~df~~L~~~~p~l~~~v~~~~~g~~~idF~~~~Av~~LnkalL~~~ygl~~wdip~~~LcPpiP~R~~Yi~~l~dll~~~ 105 (321)
T PRK11727 26 YDFAALIQSHPELKPFVILNPYGEQSIDFANPLAVKALNKALLAHFYGVAHWDIPAGYLCPPIPGRADYIHHLADLLAED 105 (321)
T ss_pred CCHHHHHHhChhHHHHhccCCCCCeeeeCCCHHHHHHHHHHHHHHhcCCCcccCCCCCcCCCCCcHHHHHHHHHHHhccc
Confidence 44444556678888888753 2345555444443321 222221 12233455555444431
Q ss_pred --------CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh-CCCCcEEEEEc-ChhhHHHHHH
Q 023645 119 --------GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKHG-LAADSLKALI 188 (279)
Q Consensus 119 --------~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-g~~~~v~~~~g-d~~~~l~~~~ 188 (279)
...++||||||+|.....++...+ +.+++++|+++.+++.|+++++.+ ++.+++++++. +..+....+.
T Consensus 106 ~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~ 184 (321)
T PRK11727 106 NGGVIPRGANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGII 184 (321)
T ss_pred ccccCCCCCCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhccc
Confidence 357999999999999888887766 689999999999999999999999 79888998753 4333332221
Q ss_pred hCCCCCcEEEEEEeCC
Q 023645 189 LNGEASSYDFAFVDAE 204 (279)
Q Consensus 189 ~~~~~~~fDlI~id~~ 204 (279)
. ..+.||+|+++++
T Consensus 185 ~--~~~~fDlivcNPP 198 (321)
T PRK11727 185 H--KNERFDATLCNPP 198 (321)
T ss_pred c--cCCceEEEEeCCC
Confidence 1 1468999999987
No 165
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.04 E-value=2.9e-09 Score=90.70 Aligned_cols=156 Identities=14% Similarity=0.142 Sum_probs=99.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHH-hC--------
Q 023645 98 GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER-AG-------- 168 (279)
Q Consensus 98 ~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~-~g-------- 168 (279)
...-.++|...+++.. ....++.+||..|||.|.-..+|++. +.+|+|+|+++.+++.+.+.... ..
T Consensus 17 w~~~~~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~ 92 (218)
T PF05724_consen 17 WDQGEPNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFK 92 (218)
T ss_dssp T--TTSTHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEE
T ss_pred CCCCCCCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCccccccee
Confidence 3334567777777666 34456679999999999999999986 57999999999999887432211 00
Q ss_pred --CCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeC-----CccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCccc
Q 023645 169 --VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMV 241 (279)
Q Consensus 169 --~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~-----~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~ 241 (279)
...+|++.+||+++..+.. .++||+|+=-+ +......|.+.+.++|+|||.+++--+.++.... .
T Consensus 93 ~~~~~~i~~~~gDfF~l~~~~-----~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~---~ 164 (218)
T PF05724_consen 93 RYQAGRITIYCGDFFELPPED-----VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM---E 164 (218)
T ss_dssp EETTSSEEEEES-TTTGGGSC-----HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS---S
T ss_pred eecCCceEEEEcccccCChhh-----cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC---C
Confidence 1236899999998754321 25899998432 3667889999999999999995443343432211 1
Q ss_pred CChhhHHHHHHHHHhhhCCCeEEEEe
Q 023645 242 NDAKTISIRNFNKNLMEDERVSISMV 267 (279)
Q Consensus 242 ~~~~~~~~~~~~~~l~~~~~~~~~~l 267 (279)
..+-.....++.+.+. +.+++..+
T Consensus 165 GPPf~v~~~ev~~l~~--~~f~i~~l 188 (218)
T PF05724_consen 165 GPPFSVTEEEVRELFG--PGFEIEEL 188 (218)
T ss_dssp SSS----HHHHHHHHT--TTEEEEEE
T ss_pred CcCCCCCHHHHHHHhc--CCcEEEEE
Confidence 2233333444555544 66665543
No 166
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=4.1e-09 Score=98.18 Aligned_cols=124 Identities=21% Similarity=0.229 Sum_probs=99.6
Q ss_pred CCCCCCCCHHHHHHHHHHHh----hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCc
Q 023645 97 RGSQMQVSPDQAQLLAMLVQ----ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK 172 (279)
Q Consensus 97 ~~~~~~~~~~~~~~l~~l~~----~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~ 172 (279)
++++.++++...+-|...+. ..+.+++||+-||.|.+++.+|+.. .+|+|+|+++++++.|+++++.++..+
T Consensus 267 ~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i~N- 342 (432)
T COG2265 267 PRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANGIDN- 342 (432)
T ss_pred CCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcCCCc-
Confidence 34678888888777766543 3456799999999999999999653 599999999999999999999999987
Q ss_pred EEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchH-HHHHHHHccCCCCcEEEEe
Q 023645 173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQ-EYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 173 v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~-~~l~~~~~~Lk~gG~lv~d 228 (279)
++|..+++.+..+... +...+|.|++|++..... .+++.+ ..++|..++.+.
T Consensus 343 ~~f~~~~ae~~~~~~~---~~~~~d~VvvDPPR~G~~~~~lk~l-~~~~p~~IvYVS 395 (432)
T COG2265 343 VEFIAGDAEEFTPAWW---EGYKPDVVVVDPPRAGADREVLKQL-AKLKPKRIVYVS 395 (432)
T ss_pred EEEEeCCHHHHhhhcc---ccCCCCEEEECCCCCCCCHHHHHHH-HhcCCCcEEEEe
Confidence 9999999998876642 135889999999977776 445544 556777777763
No 167
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.03 E-value=3.8e-09 Score=87.41 Aligned_cols=121 Identities=14% Similarity=0.179 Sum_probs=89.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCC--------EEEEEeCChhHHHHHHHHHHHhCCCCcE
Q 023645 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESG--------CLVACERDARSLEVAKKYYERAGVSHKV 173 (279)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~--------~v~~iD~s~~~~~~a~~~~~~~g~~~~v 173 (279)
.+.+..+..|..++...++..|||--||+|.+.+..+....... +++|.|+++++++.|++|++.+|+.+.+
T Consensus 11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i 90 (179)
T PF01170_consen 11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI 90 (179)
T ss_dssp SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred CCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence 56778888888888888889999999999999988776544222 4999999999999999999999999899
Q ss_pred EEEEcChhhHHHHHHhCCCCCcEEEEEEeCCc-----------cchHHHHHHHHccCCCCcEEEEe
Q 023645 174 KIKHGLAADSLKALILNGEASSYDFAFVDAEK-----------RMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 174 ~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~-----------~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
.+.++|+.+.. .. .+.+|.|+.|.+. .-|..+++.+.+.|++..++++.
T Consensus 91 ~~~~~D~~~l~-~~-----~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 91 DFIQWDARELP-LP-----DGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp EEEE--GGGGG-GT-----TSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred EEEecchhhcc-cc-----cCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 99999998654 11 5799999999862 22566788888999996666664
No 168
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.01 E-value=5e-09 Score=83.71 Aligned_cols=123 Identities=22% Similarity=0.155 Sum_probs=98.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE
Q 023645 98 GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH 177 (279)
Q Consensus 98 ~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~ 177 (279)
++....++-.++.+...+....+..|||+|.|+|.+|..+++..-+...++++|.+++......+.+. .+.++.
T Consensus 27 GaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~~~ii~ 100 (194)
T COG3963 27 GAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------GVNIIN 100 (194)
T ss_pred eeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------Cccccc
Confidence 44556778888888888888888899999999999999998876556789999999999988877664 367999
Q ss_pred cChhhHHHHHHhCCCCCcEEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEE
Q 023645 178 GLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 178 gd~~~~l~~~~~~~~~~~fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
||+.+.-..+.+.. +..||.|++.-+ .+...++++.+...|+.||.++-
T Consensus 101 gda~~l~~~l~e~~-gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 101 GDAFDLRTTLGEHK-GQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred cchhhHHHHHhhcC-CCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 99987543343322 567999998654 44567889999999999999886
No 169
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.01 E-value=6.7e-09 Score=93.19 Aligned_cols=96 Identities=15% Similarity=0.081 Sum_probs=69.9
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCC----CCcEEEEEcChhhHHHHHHhCCCCC
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV----SHKVKIKHGLAADSLKALILNGEAS 194 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~----~~~v~~~~gd~~~~l~~~~~~~~~~ 194 (279)
++.+|||+|||+|..+..+++. +.+|+++|+++.+++.|+++++..+. ..++++..+|..+. ++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---------~~ 211 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---------SG 211 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---------CC
Confidence 5679999999999999999975 56999999999999999999876522 23578888886432 47
Q ss_pred cEEEEEEeCCcc-----chHHHHHHHHccCCCCcEEEE
Q 023645 195 SYDFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 195 ~fDlI~id~~~~-----~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
+||+|++..... .....++.+.+ +.+||+++.
T Consensus 212 ~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs 248 (315)
T PLN02585 212 KYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIIS 248 (315)
T ss_pred CcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEE
Confidence 899998654321 22234555543 466777664
No 170
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.99 E-value=1.2e-09 Score=88.39 Aligned_cols=78 Identities=22% Similarity=0.262 Sum_probs=59.0
Q ss_pred CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (279)
Q Consensus 121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~ 200 (279)
+.|+|+.||.|..++.+|+.+. +|++||+++..++.|+.|.+-.|+.++|+++++|+.+.++.+.. ...||+||
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~---~~~~D~vF 74 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS---NKIFDVVF 74 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB---------SEEE
T ss_pred CEEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc---cccccEEE
Confidence 3699999999999999999854 89999999999999999999999999999999999986654311 11289999
Q ss_pred EeCC
Q 023645 201 VDAE 204 (279)
Q Consensus 201 id~~ 204 (279)
++++
T Consensus 75 lSPP 78 (163)
T PF09445_consen 75 LSPP 78 (163)
T ss_dssp E---
T ss_pred ECCC
Confidence 9976
No 171
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.96 E-value=2.8e-09 Score=89.51 Aligned_cols=104 Identities=20% Similarity=0.340 Sum_probs=83.0
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCC-CCcEEEEEcChhhHHHHHHhCCCCC
Q 023645 117 ILGAQRCIEVGVYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGV-SHKVKIKHGLAADSLKALILNGEAS 194 (279)
Q Consensus 117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~-~~~v~~~~gd~~~~l~~~~~~~~~~ 194 (279)
...+.+|||.++|-|+.++..+++ ++ +|+++|.+|..++.|+-|--..++ +..++++.||+.+..+.+ +++
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~----~D~ 204 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALER---GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDF----DDE 204 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcC----Ccc
Confidence 346789999999999999988876 45 999999999999888755332233 234899999999988877 367
Q ss_pred cEEEEEEeCCc-----c-chHHHHHHHHccCCCCcEEEE
Q 023645 195 SYDFAFVDAEK-----R-MYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 195 ~fDlI~id~~~-----~-~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
+||+|+.|++. + ...++++++++.|+|||.++-
T Consensus 205 sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 205 SFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred ccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 89999999761 1 245788999999999999875
No 172
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.96 E-value=5.1e-09 Score=88.42 Aligned_cols=111 Identities=17% Similarity=0.319 Sum_probs=79.3
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCC-C--------------------------
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV-S-------------------------- 170 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~-~-------------------------- 170 (279)
..++.+|||||-+|..|+.+++.+. .-.|.|+|+++..++.|+++++..-- .
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 3567899999999999999999986 45799999999999999998763210 0
Q ss_pred -------CcEEEEEcCh----hhHHHHHHhCCCCCcEEEEEEe---------CCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645 171 -------HKVKIKHGLA----ADSLKALILNGEASSYDFAFVD---------AEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (279)
Q Consensus 171 -------~~v~~~~gd~----~~~l~~~~~~~~~~~fDlI~id---------~~~~~~~~~l~~~~~~Lk~gG~lv~dd~ 230 (279)
+++.+...+. -+++. + ....||+|++- ..-+....+|..++++|.|||+||+.-=
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~-~----~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQ 210 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLD-M----IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQ 210 (288)
T ss_pred cccccCCcchhcccccEEEecchhhh-h----ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCC
Confidence 0111111111 11221 1 25789999863 2345688999999999999999999766
Q ss_pred CCCC
Q 023645 231 LWHG 234 (279)
Q Consensus 231 ~~~g 234 (279)
-|..
T Consensus 211 pWks 214 (288)
T KOG2899|consen 211 PWKS 214 (288)
T ss_pred chHH
Confidence 5654
No 173
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.96 E-value=1.7e-09 Score=90.62 Aligned_cols=144 Identities=17% Similarity=0.199 Sum_probs=96.0
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI 199 (279)
-+++||+|||||..+..+-... .+++|+|+|+.|++.|.+. |+-+ ++.++++..+++.. +.++||+|
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~----~~er~DLi 192 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDL----TQERFDLI 192 (287)
T ss_pred cceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhc----cCCcccch
Confidence 5799999999999998887764 4899999999999888663 2222 44555665555433 26899999
Q ss_pred EEeCC---ccchHHHHHHHHccCCCCcEEEEeCCC---CCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEE-------
Q 023645 200 FVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL---WHGKVADQMVNDAKTISIRNFNKNLMEDERVSISM------- 266 (279)
Q Consensus 200 ~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~---~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------- 266 (279)
..... ......+|-.+..+|+|||.+.+.-=. |.|-+..|..+-. --+.+.+.+.+..+++++.
T Consensus 193 ~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyA---H~~~YVr~~l~~~Gl~~i~~~~ttiR 269 (287)
T COG4976 193 VAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYA---HSESYVRALLAASGLEVIAIEDTTIR 269 (287)
T ss_pred hhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhc---cchHHHHHHHHhcCceEEEeecccch
Confidence 75322 344566777778999999999985322 2222222221111 1244566666777887654
Q ss_pred ----eecCCceEEEEEC
Q 023645 267 ----VPIGDGMTICQKR 279 (279)
Q Consensus 267 ----lp~~~G~~i~~~~ 279 (279)
-|+..++.|+||+
T Consensus 270 ~d~g~pv~G~L~iark~ 286 (287)
T COG4976 270 RDAGEPVPGILVIARKK 286 (287)
T ss_pred hhcCCCCCCceEEEecC
Confidence 4667788888874
No 174
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.94 E-value=5.2e-09 Score=90.60 Aligned_cols=107 Identities=18% Similarity=0.211 Sum_probs=84.0
Q ss_pred HHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhC
Q 023645 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 190 (279)
Q Consensus 111 l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~ 190 (279)
+.......+.++|+|||+|.|..+..++++.| +.+++.+|. |+.++.+++ .++++++.||+.+.+
T Consensus 92 ~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~------ 156 (241)
T PF00891_consen 92 LLEAFDFSGFKTVVDVGGGSGHFAIALARAYP-NLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPL------ 156 (241)
T ss_dssp HHHHSTTTTSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCC------
T ss_pred hhccccccCccEEEeccCcchHHHHHHHHHCC-CCcceeecc-Hhhhhcccc-------ccccccccccHHhhh------
Confidence 33344445667999999999999999999998 889999999 888888887 568999999998543
Q ss_pred CCCCcEEEEEEeCC-----ccchHHHHHHHHccCCCC--cEEEEeCCCCCCc
Q 023645 191 GEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVG--GIIVIDNVLWHGK 235 (279)
Q Consensus 191 ~~~~~fDlI~id~~-----~~~~~~~l~~~~~~Lk~g--G~lv~dd~~~~g~ 235 (279)
.. +|++++... .+.....|+.+.+.|+|| |.|++.+.+.+..
T Consensus 157 --P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 157 --PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp --SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred --cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence 24 999998654 344667899999999999 9999988876544
No 175
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.94 E-value=1.6e-08 Score=94.81 Aligned_cols=102 Identities=16% Similarity=0.205 Sum_probs=78.5
Q ss_pred CCEEEEEcCccCHHHHHHHHHC---CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 120 AQRCIEVGVYTGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
.+.|+|+|||+|..+...+++. ....+|++||.++.+....++.++..++.++|+++++|+.+.-. ..+.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-------pekv 259 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-------PEKV 259 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-------SS-E
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-------CCce
Confidence 5689999999999998877664 11369999999999988888888889999999999999987633 4799
Q ss_pred EEEEEeC-----CccchHHHHHHHHccCCCCcEEEEe
Q 023645 197 DFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 197 DlI~id~-----~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
|+|+.-. ..+..++.+....+.|||||+++=+
T Consensus 260 DIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP~ 296 (448)
T PF05185_consen 260 DIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIPS 296 (448)
T ss_dssp EEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEESS
T ss_pred eEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeCc
Confidence 9998642 2445667788888999999998743
No 176
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.94 E-value=5.2e-09 Score=93.48 Aligned_cols=119 Identities=21% Similarity=0.222 Sum_probs=98.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (279)
Q Consensus 101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~ 180 (279)
..+.|..+..+-++++..++..|||--||||.+.+..... +++++|+|++..|++-|+.|++..++.+-..+..+|+
T Consensus 179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da 255 (347)
T COG1041 179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDA 255 (347)
T ss_pred CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCceeEEEeccc
Confidence 4788999999999999999999999999999999887754 6899999999999999999999998776333444488
Q ss_pred hhHHHHHHhCCCCCcEEEEEEeCCc------------cchHHHHHHHHccCCCCcEEEEe
Q 023645 181 ADSLKALILNGEASSYDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 181 ~~~l~~~~~~~~~~~fDlI~id~~~------------~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
... + +. +..+|.|..|++. +-+.++++.+...|++||++++-
T Consensus 256 ~~l-p-l~----~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~ 309 (347)
T COG1041 256 TNL-P-LR----DNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA 309 (347)
T ss_pred ccC-C-CC----CCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 643 3 31 3469999999861 22778899999999999999884
No 177
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.93 E-value=1.2e-08 Score=87.18 Aligned_cols=128 Identities=9% Similarity=-0.003 Sum_probs=88.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHH------H-----hCC
Q 023645 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE------R-----AGV 169 (279)
Q Consensus 101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~------~-----~g~ 169 (279)
..+++...+.+..+.. .++.+||..|||.|.-..+|++. +.+|+|+|+|+.+++.+.+... . .-.
T Consensus 26 ~~pnp~L~~~~~~l~~-~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~ 101 (226)
T PRK13256 26 ESPNEFLVKHFSKLNI-NDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK 101 (226)
T ss_pred CCCCHHHHHHHHhcCC-CCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceec
Confidence 3455555455444322 24579999999999999999986 5789999999999988755210 0 001
Q ss_pred CCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEe-----CCccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645 170 SHKVKIKHGLAADSLKALILNGEASSYDFAFVD-----AEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGK 235 (279)
Q Consensus 170 ~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id-----~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~ 235 (279)
...+++.++|+++..+.. ...++||+|+-- -+.+....|.+.+.++|+|||.+++-..-+.+.
T Consensus 102 ~~~i~~~~gD~f~l~~~~---~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~ 169 (226)
T PRK13256 102 GDDIEIYVADIFNLPKIA---NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKK 169 (226)
T ss_pred cCceEEEEccCcCCCccc---cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCC
Confidence 236899999998753200 003689998643 345667889999999999999888765544443
No 178
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=6.3e-09 Score=86.10 Aligned_cols=102 Identities=21% Similarity=0.285 Sum_probs=80.3
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCC---------CCcEEEEEcChhhHHHH
Q 023645 117 ILGAQRCIEVGVYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGV---------SHKVKIKHGLAADSLKA 186 (279)
Q Consensus 117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~---------~~~v~~~~gd~~~~l~~ 186 (279)
..++-+.||+|+|+|+.+.+++..+...+ ..+|||..++.++.+++++.+.-- ..++.++.||.....+.
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 45778999999999999999997765444 459999999999999999886541 23578899998765443
Q ss_pred HHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 187 LILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 187 ~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
..+||.|++.+.... ..+.+...|++||.|++
T Consensus 160 ------~a~YDaIhvGAaa~~---~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 160 ------QAPYDAIHVGAAASE---LPQELLDQLKPGGRLLI 191 (237)
T ss_pred ------cCCcceEEEccCccc---cHHHHHHhhccCCeEEE
Confidence 589999999876443 34466778899999887
No 179
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=4.1e-08 Score=79.59 Aligned_cols=105 Identities=14% Similarity=0.214 Sum_probs=83.2
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI 199 (279)
++-++|||||+|..+.++++.+.+...+.++|++|++.+..++..+.++.. +..++.|..+.+. .++.|++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~~~l~-------~~~VDvL 114 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--IDVVRTDLLSGLR-------NESVDVL 114 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHHhhhc-------cCCccEE
Confidence 678999999999999999999877789999999999999999998877653 7889888887665 5899999
Q ss_pred EEeCCc------------------------cchHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645 200 FVDAEK------------------------RMYQEYFELLLQLIRVGGIIVIDNVLWH 233 (279)
Q Consensus 200 ~id~~~------------------------~~~~~~l~~~~~~Lk~gG~lv~dd~~~~ 233 (279)
+.+.+. +-...++..+-.+|.|.|++.+--+..+
T Consensus 115 vfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N 172 (209)
T KOG3191|consen 115 VFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN 172 (209)
T ss_pred EECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence 877541 0123455555678899999988544433
No 180
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.91 E-value=5.1e-09 Score=93.11 Aligned_cols=103 Identities=20% Similarity=0.304 Sum_probs=80.6
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
....+.|||+|||+|..+++.|++.. .+|+++|.+. +++.|++.+..+++.+.+++++|.+.+. .++ .++.
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi--~LP----~eKV 128 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDI--ELP----VEKV 128 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCc--ceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEE--ecC----ccce
Confidence 56789999999999999999999853 6999999985 4599999999999999999999999875 221 3799
Q ss_pred EEEEEeCC--ccchHHHHHHHH----ccCCCCcEEEEe
Q 023645 197 DFAFVDAE--KRMYQEYFELLL----QLIRVGGIIVID 228 (279)
Q Consensus 197 DlI~id~~--~~~~~~~l~~~~----~~Lk~gG~lv~d 228 (279)
|+|+.... .--+...++.++ +.|+|||+++=+
T Consensus 129 DiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 129 DIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred eEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence 99986532 112233444443 889999998654
No 181
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.90 E-value=3.1e-09 Score=88.51 Aligned_cols=95 Identities=15% Similarity=0.178 Sum_probs=71.4
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI 199 (279)
+.-|||||||+|.++..+... +...+|+|+|+.|++.|.+.- ++ -.++.+|.-+-+|.- .+.||-+
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e----~e--gdlil~DMG~Glpfr-----pGtFDg~ 116 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVERE----LE--GDLILCDMGEGLPFR-----PGTFDGV 116 (270)
T ss_pred CcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhh----hh--cCeeeeecCCCCCCC-----CCccceE
Confidence 678999999999999887753 467899999999999998621 11 257777776655543 6899998
Q ss_pred EEe--------CC------ccchHHHHHHHHccCCCCcEEEEe
Q 023645 200 FVD--------AE------KRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 200 ~id--------~~------~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
++- +. +.....||..++..|++|+..|+.
T Consensus 117 ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 117 ISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred EEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 742 22 223456788899999999988774
No 182
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.90 E-value=1.4e-08 Score=91.32 Aligned_cols=110 Identities=20% Similarity=0.180 Sum_probs=94.4
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
..++.+|+|.-+|.|++++.+|..-. ..|+++|++|.+++..++|++.+++.++++.++||+.+..+.. +.+
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~------~~a 257 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL------GVA 257 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc------ccC
Confidence 34588999999999999999998743 3499999999999999999999999999999999999887743 789
Q ss_pred EEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGK 235 (279)
Q Consensus 197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~ 235 (279)
|-|++..+.. ..+++..+...+++||++.++...-...
T Consensus 258 DrIim~~p~~-a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 258 DRIIMGLPKS-AHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred CEEEeCCCCc-chhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 9999987653 3478888999999999999987765443
No 183
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.90 E-value=3e-08 Score=87.48 Aligned_cols=104 Identities=11% Similarity=0.023 Sum_probs=75.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (279)
Q Consensus 101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~ 180 (279)
..+++.....+...+...++.+|||||||+|..+..+++.. .+|+++|+++++++.+++++.. .+++++++|+
T Consensus 24 fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~ 96 (272)
T PRK00274 24 FLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDA 96 (272)
T ss_pred cCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc----CceEEEEChh
Confidence 34555555555555556677899999999999999999874 3999999999999999887642 4699999999
Q ss_pred hhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHc
Q 023645 181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQ 217 (279)
Q Consensus 181 ~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~ 217 (279)
.+.... +-.+|.|+.+.+..-....+..+..
T Consensus 97 ~~~~~~------~~~~~~vv~NlPY~iss~ii~~~l~ 127 (272)
T PRK00274 97 LKVDLS------ELQPLKVVANLPYNITTPLLFHLLE 127 (272)
T ss_pred hcCCHH------HcCcceEEEeCCccchHHHHHHHHh
Confidence 864211 1115888888775554555555543
No 184
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.89 E-value=2.2e-08 Score=87.63 Aligned_cols=92 Identities=14% Similarity=0.084 Sum_probs=72.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (279)
Q Consensus 101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~ 180 (279)
+.+++.....+...+...++.+|||||||+|..|..+++. ..+|+++|+++.+++.+++++.. .++++++++|+
T Consensus 11 fl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~ 84 (258)
T PRK14896 11 FLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDA 84 (258)
T ss_pred ccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEecc
Confidence 4456666666666666667789999999999999999987 35899999999999999988754 34699999999
Q ss_pred hhHHHHHHhCCCCCcEEEEEEeCCcc
Q 023645 181 ADSLKALILNGEASSYDFAFVDAEKR 206 (279)
Q Consensus 181 ~~~l~~~~~~~~~~~fDlI~id~~~~ 206 (279)
.+.. ...||.|+.+.+..
T Consensus 85 ~~~~--------~~~~d~Vv~NlPy~ 102 (258)
T PRK14896 85 LKVD--------LPEFNKVVSNLPYQ 102 (258)
T ss_pred ccCC--------chhceEEEEcCCcc
Confidence 7642 23589999887644
No 185
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.87 E-value=2.8e-08 Score=82.39 Aligned_cols=96 Identities=20% Similarity=0.377 Sum_probs=81.1
Q ss_pred EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEE
Q 023645 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201 (279)
Q Consensus 122 ~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~i 201 (279)
+++|||+|.|.-++.++-..| +.+++.+|.....+...+......|+++ ++++++.+.+ +.. ..+||+|++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~--~~~-----~~~fd~v~a 121 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLSN-VEVINGRAEE--PEY-----RESFDVVTA 121 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES-HHH--TTT-----TT-EEEEEE
T ss_pred eEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEeeecc--ccc-----CCCccEEEe
Confidence 899999999999999999887 7899999999999999999999999975 9999999976 111 689999998
Q ss_pred eCCccchHHHHHHHHccCCCCcEEEE
Q 023645 202 DAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 202 d~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
-+.. ....+++.+.++|++||.+++
T Consensus 122 RAv~-~l~~l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 122 RAVA-PLDKLLELARPLLKPGGRLLA 146 (184)
T ss_dssp ESSS-SHHHHHHHHGGGEEEEEEEEE
T ss_pred ehhc-CHHHHHHHHHHhcCCCCEEEE
Confidence 7754 355788899999999999987
No 186
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.85 E-value=1.9e-08 Score=83.93 Aligned_cols=114 Identities=17% Similarity=0.158 Sum_probs=84.7
Q ss_pred EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHH--hCCCCCcEEEE
Q 023645 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI--LNGEASSYDFA 199 (279)
Q Consensus 122 ~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~--~~~~~~~fDlI 199 (279)
+|||||||||--+.++++.+| ..+...-|.++......+..+...++.+-..-+.-|+.+...... .....+.||.|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 599999999999999999998 688889999999988888888888776533444445543211110 00014689999
Q ss_pred EEeC-----CccchHHHHHHHHccCCCCcEEEEeCCCC-CCcc
Q 023645 200 FVDA-----EKRMYQEYFELLLQLIRVGGIIVIDNVLW-HGKV 236 (279)
Q Consensus 200 ~id~-----~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~-~g~~ 236 (279)
|+-. +......+|+.+.++|++||.|++-..+. +|..
T Consensus 107 ~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ 149 (204)
T PF06080_consen 107 FCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKF 149 (204)
T ss_pred eehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEe
Confidence 9754 35567788999999999999999988764 4544
No 187
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.84 E-value=5e-08 Score=85.17 Aligned_cols=103 Identities=15% Similarity=0.129 Sum_probs=74.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (279)
Q Consensus 101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~ 180 (279)
..+++.....+...+...++.+|||||||+|..+..+++..+ +++++|+++.+++.+++++.. ..+++++++|+
T Consensus 11 fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~ 84 (253)
T TIGR00755 11 FLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDA 84 (253)
T ss_pred cCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc---CCcEEEEECch
Confidence 345555555555555556778999999999999999998754 699999999999999887743 34699999999
Q ss_pred hhHHHHHHhCCCCCcEE---EEEEeCCccchHHHHHHHHc
Q 023645 181 ADSLKALILNGEASSYD---FAFVDAEKRMYQEYFELLLQ 217 (279)
Q Consensus 181 ~~~l~~~~~~~~~~~fD---lI~id~~~~~~~~~l~~~~~ 217 (279)
.+... ..|| +|+.+.+.......+..+..
T Consensus 85 ~~~~~--------~~~d~~~~vvsNlPy~i~~~il~~ll~ 116 (253)
T TIGR00755 85 LKVDL--------PDFPKQLKVVSNLPYNISSPLIFKLLE 116 (253)
T ss_pred hcCCh--------hHcCCcceEEEcCChhhHHHHHHHHhc
Confidence 76422 1344 77777665555555555554
No 188
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.83 E-value=5.1e-09 Score=88.45 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=79.3
Q ss_pred CEEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645 121 QRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (279)
Q Consensus 121 ~~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI 199 (279)
.+|||||||.|.....+.+..+. +-.|+++|.+|.+++..+++..... .++.....|... +.+....+.+++|+|
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~--~~~~~~~~~~svD~i 148 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTS--PSLKEPPEEGSVDII 148 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccc--hhccCCCCcCccceE
Confidence 37999999999999999987762 2689999999999999988766433 345444445432 222222246788876
Q ss_pred EE-----eCCccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645 200 FV-----DAEKRMYQEYFELLLQLIRVGGIIVIDNVLW 232 (279)
Q Consensus 200 ~i-----d~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~ 232 (279)
.+ ...++.....++.+.++|||||.|++.|...
T Consensus 149 t~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 149 TLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred EEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 43 2346667789999999999999999988753
No 189
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.82 E-value=1.3e-08 Score=85.15 Aligned_cols=89 Identities=17% Similarity=0.191 Sum_probs=65.4
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl 198 (279)
++.+|||||||+|..+..+++.. ...++++|+++++++.+++ .+++++++|+.+.++.. .+++||+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~--------~~~~~~~~d~~~~l~~~----~~~sfD~ 78 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA--------RGVNVIQGDLDEGLEAF----PDKSFDY 78 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH--------cCCeEEEEEhhhccccc----CCCCcCE
Confidence 46699999999999998887653 4678999999999888754 13678888886533212 1578999
Q ss_pred EEEeCC---ccchHHHHHHHHccCCC
Q 023645 199 AFVDAE---KRMYQEYFELLLQLIRV 221 (279)
Q Consensus 199 I~id~~---~~~~~~~l~~~~~~Lk~ 221 (279)
|++... ..+....++++.+.+++
T Consensus 79 Vi~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 79 VILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred EEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 998764 34456677777776554
No 190
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.81 E-value=2.1e-08 Score=82.61 Aligned_cols=132 Identities=17% Similarity=0.190 Sum_probs=88.4
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
.++.+|||+|||.|....++.+. .+.+.+|+|++++.+..+.+ ..+.++++|+.+.+.... +++||
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~--------rGv~Viq~Dld~gL~~f~----d~sFD 77 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVA--------RGVSVIQGDLDEGLADFP----DQSFD 77 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHH--------cCCCEEECCHHHhHhhCC----CCCcc
Confidence 45679999999999998888775 26899999999987655433 237899999988776653 78999
Q ss_pred EEEEeCCc---cchHHHHHHHHccCCCCcEEEEeCCC---------CCCcccCc-----cc---CChhhHHHHHHHHHhh
Q 023645 198 FAFVDAEK---RMYQEYFELLLQLIRVGGIIVIDNVL---------WHGKVADQ-----MV---NDAKTISIRNFNKNLM 257 (279)
Q Consensus 198 lI~id~~~---~~~~~~l~~~~~~Lk~gG~lv~dd~~---------~~g~~~~~-----~~---~~~~~~~~~~~~~~l~ 257 (279)
.|++.... ......++++.+.-| .+++-+-|.- +.|+|.-. .| ...+-..+++|.+.-.
T Consensus 78 ~VIlsqtLQ~~~~P~~vL~EmlRVgr-~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~ 156 (193)
T PF07021_consen 78 YVILSQTLQAVRRPDEVLEEMLRVGR-RAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCR 156 (193)
T ss_pred EEehHhHHHhHhHHHHHHHHHHHhcC-eEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHH
Confidence 99987653 334556666655433 3566666652 46655321 11 1223446888876654
Q ss_pred hCCCeEEE
Q 023645 258 EDERVSIS 265 (279)
Q Consensus 258 ~~~~~~~~ 265 (279)
+ .++.+.
T Consensus 157 ~-~~i~I~ 163 (193)
T PF07021_consen 157 E-LGIRIE 163 (193)
T ss_pred H-CCCEEE
Confidence 4 455543
No 191
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.80 E-value=1.1e-08 Score=85.96 Aligned_cols=137 Identities=18% Similarity=0.175 Sum_probs=87.4
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl 198 (279)
...+.||+|+|.|..|..++... -.+|..+|..+.+++.|++.+... .....++.+....++.|. .++||+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~------~~~YDl 125 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPE------EGKYDL 125 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----------TT-EEE
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCC------CCcEeE
Confidence 35699999999999998765433 359999999999999999876541 123357777777777664 479999
Q ss_pred EEEeCC-----ccchHHHHHHHHccCCCCcEEEEe-CCCCCCc-ccCcccCChhhHHHHHHHHHhhhCCCeEEEE
Q 023645 199 AFVDAE-----KRMYQEYFELLLQLIRVGGIIVID-NVLWHGK-VADQMVNDAKTISIRNFNKNLMEDERVSISM 266 (279)
Q Consensus 199 I~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~d-d~~~~g~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 266 (279)
|++.-. -.+...+|+.+...|+|+|+|++. |+.-.|. +.|+.... -|.. .+..+.|....++.++.
T Consensus 126 IW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsS-vTRs-~~~~~~lF~~AGl~~v~ 198 (218)
T PF05891_consen 126 IWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSS-VTRS-DEHFRELFKQAGLRLVK 198 (218)
T ss_dssp EEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTE-EEEE-HHHHHHHHHHCT-EEEE
T ss_pred EEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCe-eecC-HHHHHHHHHHcCCEEEE
Confidence 998643 456788999999999999999995 4555554 55544321 1111 22334444556666553
No 192
>PRK00536 speE spermidine synthase; Provisional
Probab=98.77 E-value=2.1e-07 Score=81.16 Aligned_cols=99 Identities=10% Similarity=0.087 Sum_probs=77.7
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh--CC-CCcEEEEEcChhhHHHHHHhCCCC
Q 023645 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GV-SHKVKIKHGLAADSLKALILNGEA 193 (279)
Q Consensus 117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--g~-~~~v~~~~gd~~~~l~~~~~~~~~ 193 (279)
...|++||=||.|-|..+..+++. + .+|+.||++++.++.+++.+... ++ +.|++++.. .... ..
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-----~~~~----~~ 137 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-----LLDL----DI 137 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-----hhhc----cC
Confidence 456899999999999999999986 3 39999999999999999966542 22 457888751 1111 13
Q ss_pred CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645 194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229 (279)
Q Consensus 194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd 229 (279)
++||+|++|... ..++++.+.+.|+|||+++...
T Consensus 138 ~~fDVIIvDs~~--~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 138 KKYDLIICLQEP--DIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CcCCEEEEcCCC--ChHHHHHHHHhcCCCcEEEECC
Confidence 689999999653 3578899999999999999964
No 193
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.76 E-value=8.8e-08 Score=91.50 Aligned_cols=102 Identities=15% Similarity=0.146 Sum_probs=82.8
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI 199 (279)
...+||||||.|.++..+|...| +..++|+|+....+..+.+.....++.+ +.++++|+......+ .++++|.|
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~----~~~sv~~i 421 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDL----PNNSLDGI 421 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhc----CcccccEE
Confidence 45899999999999999999988 7899999999999988888888888865 888888875433333 15779999
Q ss_pred EEeC---Ccc--------chHHHHHHHHccCCCCcEEEE
Q 023645 200 FVDA---EKR--------MYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 200 ~id~---~~~--------~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
++.. ++. -...+++.+.+.|+|||.|.+
T Consensus 422 ~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~ 460 (506)
T PRK01544 422 YILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF 460 (506)
T ss_pred EEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE
Confidence 8864 311 157799999999999998877
No 194
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.75 E-value=5.7e-08 Score=86.14 Aligned_cols=82 Identities=22% Similarity=0.184 Sum_probs=68.3
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
.++..+||.+||.|..|..+++.+++.++|+|+|.++++++.|++.+.. .++++++++++.+....+.. + ..++|
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~-~-~~~vD 92 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAE-G-LGKVD 92 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHc-C-CCccC
Confidence 4567999999999999999999987679999999999999999988764 45799999999887555421 1 23799
Q ss_pred EEEEeCC
Q 023645 198 FAFVDAE 204 (279)
Q Consensus 198 lI~id~~ 204 (279)
.|++|.+
T Consensus 93 gIl~DLG 99 (296)
T PRK00050 93 GILLDLG 99 (296)
T ss_pred EEEECCC
Confidence 9998865
No 195
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.75 E-value=2.4e-08 Score=83.16 Aligned_cols=84 Identities=19% Similarity=0.216 Sum_probs=71.7
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
......|+|..||.|+.++.++... ..|++||++|..+..|+.|++-.|..++|+|++||+++....+.. +...+
T Consensus 92 ~~~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~--~K~~~ 166 (263)
T KOG2730|consen 92 CMNAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKA--DKIKY 166 (263)
T ss_pred hcCcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhh--hhhee
Confidence 3367789999999999999998875 499999999999999999999999999999999999998766532 24568
Q ss_pred EEEEEeCCc
Q 023645 197 DFAFVDAEK 205 (279)
Q Consensus 197 DlI~id~~~ 205 (279)
|+||..++.
T Consensus 167 ~~vf~sppw 175 (263)
T KOG2730|consen 167 DCVFLSPPW 175 (263)
T ss_pred eeeecCCCC
Confidence 899987653
No 196
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.73 E-value=8.7e-08 Score=87.57 Aligned_cols=115 Identities=24% Similarity=0.256 Sum_probs=73.5
Q ss_pred CCCCCCCCHHHHHHHHHHHh-hcC--CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcE
Q 023645 97 RGSQMQVSPDQAQLLAMLVQ-ILG--AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV 173 (279)
Q Consensus 97 ~~~~~~~~~~~~~~l~~l~~-~~~--~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v 173 (279)
++++.++++.+.+.+...+. ..+ +..|||+.||.|.+++.+|... .+|+|||.++++++.|+++++.+++.+ +
T Consensus 171 ~~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n-~ 246 (352)
T PF05958_consen 171 PGSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDN-V 246 (352)
T ss_dssp TTS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--S-E
T ss_pred CCcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCc-c
Confidence 56778888887766555443 222 2389999999999999999875 599999999999999999999999975 9
Q ss_pred EEEEcChhhHHHHHHhC----------CCCCcEEEEEEeCCccchHH-HHHHH
Q 023645 174 KIKHGLAADSLKALILN----------GEASSYDFAFVDAEKRMYQE-YFELL 215 (279)
Q Consensus 174 ~~~~gd~~~~l~~~~~~----------~~~~~fDlI~id~~~~~~~~-~l~~~ 215 (279)
+|+.+++.+....+... .....+|+|++|++...... .++.+
T Consensus 247 ~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~ 299 (352)
T PF05958_consen 247 EFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELI 299 (352)
T ss_dssp EEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHH
T ss_pred eEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHH
Confidence 99999886643322100 01236899999998665443 44444
No 197
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.73 E-value=1.5e-08 Score=85.69 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=71.2
Q ss_pred HHHHHHhhcCCC-EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHH
Q 023645 110 LLAMLVQILGAQ-RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188 (279)
Q Consensus 110 ~l~~l~~~~~~~-~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~ 188 (279)
++..++...+.. .++|+|||+|..+..++.... +|+++|+++.|++.|++.....-..-..++...+..+.+
T Consensus 23 w~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~---- 95 (261)
T KOG3010|consen 23 WFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL---- 95 (261)
T ss_pred HHHHHHhhCCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccccCCcccccccccccc----
Confidence 344444444333 799999999977777887754 899999999999988875432111111122211221111
Q ss_pred hCCCCCcEEEEEEeCC--ccchHHHHHHHHccCCCCc-EEEE
Q 023645 189 LNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGG-IIVI 227 (279)
Q Consensus 189 ~~~~~~~fDlI~id~~--~~~~~~~l~~~~~~Lk~gG-~lv~ 227 (279)
|.+++.|+|.+.-. .=+...+++.+.++||+.| ++.+
T Consensus 96 --g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 96 --GGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred --CCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence 12689999987543 2346789999999999877 6666
No 198
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.72 E-value=8.7e-08 Score=86.58 Aligned_cols=107 Identities=10% Similarity=0.131 Sum_probs=72.2
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhC---------CCCcEEEEEcChhhH-HHHHH
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG---------VSHKVKIKHGLAADS-LKALI 188 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g---------~~~~v~~~~gd~~~~-l~~~~ 188 (279)
++.+|||+|||-|.-..-+..+- -.+++|+|++++.++.|++.++... ..-...++.+|.... +....
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 56799999999888666666542 3699999999999999999984321 112367788887642 22211
Q ss_pred hCCCCCcEEEEEEeCC-------ccchHHHHHHHHccCCCCcEEEEe
Q 023645 189 LNGEASSYDFAFVDAE-------KRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 189 ~~~~~~~fDlI~id~~-------~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
.. ...+||+|-+-.. .+....+++.+...|+|||+++..
T Consensus 140 ~~-~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 140 PP-RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp SS-TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cc-cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 11 1359999977643 334566899999999999999973
No 199
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.68 E-value=4.3e-07 Score=79.15 Aligned_cols=118 Identities=18% Similarity=0.265 Sum_probs=95.4
Q ss_pred HHhhcCCCEEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhC
Q 023645 114 LVQILGAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN 190 (279)
Q Consensus 114 l~~~~~~~~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~ 190 (279)
+.....+-+||||.||.|...+-.....|. ...|...|.++..++..++.+++.|+.+.++|.++|+++. +..+
T Consensus 130 L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l--- 206 (311)
T PF12147_consen 130 LREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAAL--- 206 (311)
T ss_pred HHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhcc---
Confidence 333456789999999999999888888774 3589999999999999999999999998779999999874 3333
Q ss_pred CCCCcEEEEEEeCCcc------chHHHHHHHHccCCCCcEEEEeCCCCCCcc
Q 023645 191 GEASSYDFAFVDAEKR------MYQEYFELLLQLIRVGGIIVIDNVLWHGKV 236 (279)
Q Consensus 191 ~~~~~fDlI~id~~~~------~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~ 236 (279)
....+++++.+-.+ .....+.-+...+.|||++|..+--|+-..
T Consensus 207 --~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQl 256 (311)
T PF12147_consen 207 --DPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQL 256 (311)
T ss_pred --CCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcch
Confidence 45679998876532 244467778899999999999987777654
No 200
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.67 E-value=1.3e-07 Score=79.82 Aligned_cols=98 Identities=23% Similarity=0.408 Sum_probs=82.7
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc-EEE
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS-YDF 198 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~-fDl 198 (279)
+++++|||+|.|.-++.++-..| +.+||-+|.....+...++...+.++++ ++++++.+.+.-+ ..+ ||+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~i~~~RaE~~~~-------~~~~~D~ 138 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGLEN-VEIVHGRAEEFGQ-------EKKQYDV 138 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCCCC-eEEehhhHhhccc-------ccccCcE
Confidence 68999999999999999997777 6779999999999999999999999975 9999999976543 223 999
Q ss_pred EEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 199 AFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 199 I~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
|.+-+.. ......+.+.+++++||.+++
T Consensus 139 vtsRAva-~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 139 VTSRAVA-SLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred EEeehcc-chHHHHHHHHHhcccCCcchh
Confidence 9886643 345678888999999988765
No 201
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.64 E-value=1.2e-07 Score=83.59 Aligned_cols=100 Identities=15% Similarity=0.171 Sum_probs=78.6
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
..++.|||+|||+|..+.+.+++. ..+|+++|.+ +|.+.|++.++.+.+.++++++.|...+.- + .++.|
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdie--L-----PEk~D 245 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIE--L-----PEKVD 245 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhC--cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcccccc--C-----chhcc
Confidence 357899999999999999988874 3699999997 789999999999999999999999987651 2 47899
Q ss_pred EEEEeCC-----ccchHHHHHHHHccCCCCcEEEE
Q 023645 198 FAFVDAE-----KRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 198 lI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
+|+..+- .+...+-.-.+.+.|+|.|.+.-
T Consensus 246 viISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 246 VIISEPMGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred EEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 9987643 12222223344699999998763
No 202
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=8.2e-07 Score=76.99 Aligned_cols=103 Identities=16% Similarity=0.113 Sum_probs=75.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (279)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~ 181 (279)
.++....+-+-..+...++.+|||||+|.|..|..+++.. .+|+++|+++.+++..++.+. ..++++++++|+.
T Consensus 13 L~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaL 86 (259)
T COG0030 13 LIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDAL 86 (259)
T ss_pred ccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchh
Confidence 3444444444455555667899999999999999999974 589999999999999988775 3457999999998
Q ss_pred hH-HHHHHhCCCCCcEEEEEEeCCccchHHHHHHHH
Q 023645 182 DS-LKALILNGEASSYDFAFVDAEKRMYQEYFELLL 216 (279)
Q Consensus 182 ~~-l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~ 216 (279)
.. ++.+ .+++.|+.+-+..-....+..+.
T Consensus 87 k~d~~~l------~~~~~vVaNlPY~Isspii~kll 116 (259)
T COG0030 87 KFDFPSL------AQPYKVVANLPYNISSPILFKLL 116 (259)
T ss_pred cCcchhh------cCCCEEEEcCCCcccHHHHHHHH
Confidence 74 2221 16789998877555445544444
No 203
>PRK04148 hypothetical protein; Provisional
Probab=98.61 E-value=4.6e-07 Score=70.80 Aligned_cols=100 Identities=12% Similarity=0.076 Sum_probs=69.4
Q ss_pred HHHHHHhhcCCCEEEEEcCccCH-HHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHH
Q 023645 110 LLAMLVQILGAQRCIEVGVYTGY-SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188 (279)
Q Consensus 110 ~l~~l~~~~~~~~VLEiG~G~G~-~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~ 188 (279)
++.......++++|||||||+|. .+..|++. +..|+++|++++.++.++++ .+.++.+|.++.-..+
T Consensus 7 ~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~- 74 (134)
T PRK04148 7 FIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEI- 74 (134)
T ss_pred HHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHH-
Confidence 33333333445789999999997 66666653 57999999999988877664 2688999998754444
Q ss_pred hCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 189 LNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 189 ~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
-..+|+|+.--+.......+-.+.+.+ |.-+++
T Consensus 75 ----y~~a~liysirpp~el~~~~~~la~~~--~~~~~i 107 (134)
T PRK04148 75 ----YKNAKLIYSIRPPRDLQPFILELAKKI--NVPLII 107 (134)
T ss_pred ----HhcCCEEEEeCCCHHHHHHHHHHHHHc--CCCEEE
Confidence 468999998776666555555555533 334444
No 204
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.57 E-value=3.3e-07 Score=72.06 Aligned_cols=111 Identities=18% Similarity=0.296 Sum_probs=78.1
Q ss_pred EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC------------ccchHHHHH
Q 023645 146 CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE------------KRMYQEYFE 213 (279)
Q Consensus 146 ~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~------------~~~~~~~l~ 213 (279)
+|+++|+.+++++.+++.+++.++.+++++++.+-......+. .+++|+++.+-+ .+.....++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~----~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIP----EGPVDAAIFNLGYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT------S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCc----cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence 6899999999999999999999998899999887765443331 248999987632 233567899
Q ss_pred HHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEEe
Q 023645 214 LLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMV 267 (279)
Q Consensus 214 ~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 267 (279)
.+..+|+|||+|++ ++++|+.. +..+..++.+|.+.| +...|.+...
T Consensus 77 ~al~lL~~gG~i~i--v~Y~GH~g----G~eE~~av~~~~~~L-~~~~~~V~~~ 123 (140)
T PF06962_consen 77 AALELLKPGGIITI--VVYPGHPG----GKEESEAVEEFLASL-DQKEFNVLKY 123 (140)
T ss_dssp HHHHHEEEEEEEEE--EE--STCH----HHHHHHHHHHHHHTS--TTTEEEEEE
T ss_pred HHHHhhccCCEEEE--EEeCCCCC----CHHHHHHHHHHHHhC-CcceEEEEEE
Confidence 99999999999999 67888732 234566788888777 4456766543
No 205
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.57 E-value=3.4e-07 Score=80.24 Aligned_cols=103 Identities=18% Similarity=0.216 Sum_probs=68.5
Q ss_pred CCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHH-HhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 120 AQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYE-RAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 120 ~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~-~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
|++|+=||||. -.+++.+++....+..|+++|+++++.+.+++.++ ..|+..+++|+.+|..+.... -..||
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d------l~~~D 194 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD------LKEYD 194 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----------S
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc------cccCC
Confidence 46999999995 44556666554336789999999999999999888 668888999999999765433 26899
Q ss_pred EEEEeCCcc----chHHHHHHHHccCCCCcEEEEe
Q 023645 198 FAFVDAEKR----MYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 198 lI~id~~~~----~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
+||+.+-.. .-.+.++.+.+.++||+.+++.
T Consensus 195 vV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 195 VVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp EEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred EEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 999976543 6678999999999999999986
No 206
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=4.2e-07 Score=71.11 Aligned_cols=77 Identities=17% Similarity=0.290 Sum_probs=63.4
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
..++.++|+|||+|..+...+ ++..-.|+|+|++|++++.+.+|.++..++ +.+.++|..+.... .+.||
T Consensus 47 iEgkkl~DLgcgcGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~------~g~fD 116 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELK------GGIFD 116 (185)
T ss_pred ccCcchhhhcCchhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhcc------CCeEe
Confidence 468899999999999884433 444568999999999999999999987775 68999998765443 48899
Q ss_pred EEEEeCC
Q 023645 198 FAFVDAE 204 (279)
Q Consensus 198 lI~id~~ 204 (279)
.++++.+
T Consensus 117 taviNpp 123 (185)
T KOG3420|consen 117 TAVINPP 123 (185)
T ss_pred eEEecCC
Confidence 9999976
No 207
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=98.53 E-value=2.7e-07 Score=79.79 Aligned_cols=149 Identities=21% Similarity=0.304 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHHHh----hcCCCEEEEEcCccCHHHHHHHHHC---C-CCCEEEEEeCCh--------------------
Q 023645 103 VSPDQAQLLAMLVQ----ILGAQRCIEVGVYTGYSSLAIALVL---P-ESGCLVACERDA-------------------- 154 (279)
Q Consensus 103 ~~~~~~~~l~~l~~----~~~~~~VLEiG~G~G~~t~~la~~~---~-~~~~v~~iD~s~-------------------- 154 (279)
+.......|..+++ ..-+..|+|+||..|.+++.++..+ . .+-+++++|.=+
T Consensus 54 ~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~ 133 (248)
T PF05711_consen 54 IGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHE 133 (248)
T ss_dssp SHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCG
T ss_pred cCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhh
Confidence 44444444444444 2346799999999999887765432 2 234688888411
Q ss_pred ------hHHHHHHHHHHHhCC-CCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC-ccchHHHHHHHHccCCCCcEEE
Q 023645 155 ------RSLEVAKKYYERAGV-SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-KRMYQEYFELLLQLIRVGGIIV 226 (279)
Q Consensus 155 ------~~~~~a~~~~~~~g~-~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~-~~~~~~~l~~~~~~Lk~gG~lv 226 (279)
...+..++++...|+ .++++++.|.+.+.++... ..++-++.+|.+ .+.....|+.+++.|.|||+|+
T Consensus 134 ~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p----~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi 209 (248)
T PF05711_consen 134 YNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAP----IERIALLHLDCDLYESTKDALEFLYPRLSPGGIII 209 (248)
T ss_dssp CCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-T----T--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEE
T ss_pred cccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCC----CccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEE
Confidence 123445555655554 4579999999998877542 467888889987 5667788999999999999999
Q ss_pred EeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEEeec
Q 023645 227 IDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPI 269 (279)
Q Consensus 227 ~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~ 269 (279)
+||..++| ...|+.+|.+. .++...+.++
T Consensus 210 ~DDY~~~g----------cr~AvdeF~~~----~gi~~~l~~i 238 (248)
T PF05711_consen 210 FDDYGHPG----------CRKAVDEFRAE----HGITDPLHPI 238 (248)
T ss_dssp ESSTTTHH----------HHHHHHHHHHH----TT--S--EE-
T ss_pred EeCCCChH----------HHHHHHHHHHH----cCCCCccEEe
Confidence 99987743 24577777543 3444445565
No 208
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.53 E-value=2.2e-07 Score=75.51 Aligned_cols=78 Identities=12% Similarity=0.077 Sum_probs=60.8
Q ss_pred EEEeCChhHHHHHHHHHHHh--CCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC---ccchHHHHHHHHccCCCC
Q 023645 148 VACERDARSLEVAKKYYERA--GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVG 222 (279)
Q Consensus 148 ~~iD~s~~~~~~a~~~~~~~--g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~g 222 (279)
+|+|+|++|++.|++..+.. +..++++++++|+.+. +. .+++||+|++... ..+....++++.++||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p~-----~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpG 74 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-PF-----DDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPG 74 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-CC-----CCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcC
Confidence 48999999999998776532 2234699999999754 22 1578999988653 456788999999999999
Q ss_pred cEEEEeCCC
Q 023645 223 GIIVIDNVL 231 (279)
Q Consensus 223 G~lv~dd~~ 231 (279)
|.+++.+..
T Consensus 75 G~l~i~d~~ 83 (160)
T PLN02232 75 SRVSILDFN 83 (160)
T ss_pred eEEEEEECC
Confidence 999987764
No 209
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.50 E-value=8.4e-07 Score=76.40 Aligned_cols=79 Identities=20% Similarity=0.190 Sum_probs=66.5
Q ss_pred HhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (279)
Q Consensus 115 ~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~ 194 (279)
+...++..|||||.|||..|..+.++ +.+|+++|++|.++....+.++....+++.++++||+.... ..
T Consensus 54 a~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d--------~P 122 (315)
T KOG0820|consen 54 ADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD--------LP 122 (315)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC--------Cc
Confidence 33456779999999999999999987 56999999999999999999887666789999999997541 35
Q ss_pred cEEEEEEeCC
Q 023645 195 SYDFAFVDAE 204 (279)
Q Consensus 195 ~fDlI~id~~ 204 (279)
.||.++.+-+
T Consensus 123 ~fd~cVsNlP 132 (315)
T KOG0820|consen 123 RFDGCVSNLP 132 (315)
T ss_pred ccceeeccCC
Confidence 7899988655
No 210
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.45 E-value=9.3e-07 Score=77.83 Aligned_cols=107 Identities=12% Similarity=0.120 Sum_probs=77.3
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCC-----cEEEEEcChhh-HHHHHHhCC
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-----KVKIKHGLAAD-SLKALILNG 191 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~-----~v~~~~gd~~~-~l~~~~~~~ 191 (279)
.+...++++|||-|.-.+-+-++- -+.++|+|+.+..++.|++.++...-.. .+.|+.+|... .+..+.+.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~- 192 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF- 192 (389)
T ss_pred ccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC-
Confidence 456789999999999888777653 3689999999999999999887542222 37888888754 34443321
Q ss_pred CCCcEEEEEEeCC-------ccchHHHHHHHHccCCCCcEEEE
Q 023645 192 EASSYDFAFVDAE-------KRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 192 ~~~~fDlI~id~~-------~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
.+.+||+|-+.-. .+...-++..+...|+|||++|-
T Consensus 193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence 1334999954321 33345678889999999999996
No 211
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=1.1e-06 Score=81.85 Aligned_cols=126 Identities=19% Similarity=0.210 Sum_probs=92.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhh----cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCc
Q 023645 97 RGSQMQVSPDQAQLLAMLVQI----LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK 172 (279)
Q Consensus 97 ~~~~~~~~~~~~~~l~~l~~~----~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~ 172 (279)
++.+.+++...++.++..+.. ...+.++|+.||||.+++.+++.. .+|+|||++++.++-|+++...+|.++
T Consensus 357 p~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~NgisN- 432 (534)
T KOG2187|consen 357 PGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGISN- 432 (534)
T ss_pred CchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCccc-
Confidence 456778888888888877653 456789999999999999999875 599999999999999999999999986
Q ss_pred EEEEEcChhhHHHHHHhCCCCCcEE-EEEEeCCccchHHHHHHHHccCC-CCcEEEE
Q 023645 173 VKIKHGLAADSLKALILNGEASSYD-FAFVDAEKRMYQEYFELLLQLIR-VGGIIVI 227 (279)
Q Consensus 173 v~~~~gd~~~~l~~~~~~~~~~~fD-lI~id~~~~~~~~~l~~~~~~Lk-~gG~lv~ 227 (279)
.+|++|-+++..+.+.... .+.-+ ++++|.+.......+....+..+ +--.+.+
T Consensus 433 a~Fi~gqaE~~~~sl~~~~-~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyv 488 (534)
T KOG2187|consen 433 ATFIVGQAEDLFPSLLTPC-CDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYV 488 (534)
T ss_pred eeeeecchhhccchhcccC-CCCCceEEEECCCcccccHHHHHHHHhccCccceEEE
Confidence 9999998888777764322 12334 67788876554443333333333 4433333
No 212
>PRK10742 putative methyltransferase; Provisional
Probab=98.44 E-value=1.8e-06 Score=74.26 Aligned_cols=88 Identities=16% Similarity=0.248 Sum_probs=72.4
Q ss_pred HHHHHHHhhcCCC--EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh------C--CCCcEEEEEc
Q 023645 109 QLLAMLVQILGAQ--RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA------G--VSHKVKIKHG 178 (279)
Q Consensus 109 ~~l~~l~~~~~~~--~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~------g--~~~~v~~~~g 178 (279)
+.+...+...++. +|||+-+|+|..++.++.. +++|+++|.++......+++++.+ + +..+++++++
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 3455555555655 8999999999999999976 678999999999999999999875 2 2257999999
Q ss_pred ChhhHHHHHHhCCCCCcEEEEEEeCC
Q 023645 179 LAADSLKALILNGEASSYDFAFVDAE 204 (279)
Q Consensus 179 d~~~~l~~~~~~~~~~~fDlI~id~~ 204 (279)
|+.+++... ...||+||+|+.
T Consensus 153 da~~~L~~~-----~~~fDVVYlDPM 173 (250)
T PRK10742 153 SSLTALTDI-----TPRPQVVYLDPM 173 (250)
T ss_pred cHHHHHhhC-----CCCCcEEEECCC
Confidence 999998764 457999999986
No 213
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.43 E-value=2.5e-06 Score=76.57 Aligned_cols=125 Identities=16% Similarity=0.190 Sum_probs=84.8
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHC------CCCCEEEEEeCChhHHHHHHHHHHHhCCCCc
Q 023645 99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL------PESGCLVACERDARSLEVAKKYYERAGVSHK 172 (279)
Q Consensus 99 ~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~------~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~ 172 (279)
+...++.....++..++...++.+|+|-+||+|.+...+.+.+ ....+++|+|+++.++..|+-++.-.+....
T Consensus 26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~ 105 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS 105 (311)
T ss_dssp GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB
T ss_pred ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc
Confidence 3456778888899999887888899999999999998887743 1257999999999999999988776665332
Q ss_pred -EEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccc------------------------hHHHHHHHHccCCCCcEEEE
Q 023645 173 -VKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM------------------------YQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 173 -v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~------------------------~~~~l~~~~~~Lk~gG~lv~ 227 (279)
..+..+|........ ...+||+|+.+++... ...++..+...|++||.+++
T Consensus 106 ~~~i~~~d~l~~~~~~----~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~ 181 (311)
T PF02384_consen 106 NINIIQGDSLENDKFI----KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAI 181 (311)
T ss_dssp GCEEEES-TTTSHSCT----ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred cccccccccccccccc----cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeE
Confidence 468888876542210 1368999998865111 12477888999999997544
No 214
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=4.4e-06 Score=69.83 Aligned_cols=101 Identities=20% Similarity=0.191 Sum_probs=74.0
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh--HHHHHHhCCCCCc
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD--SLKALILNGEASS 195 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~--~l~~~~~~~~~~~ 195 (279)
.++..|+|+|+..|.|+..+++.++.+++|+++|+.|-. .-..|.++++|+.+ .+..+...-...+
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~ 111 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDITDEDTLEKLLEALGGAP 111 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeeeccCccHHHHHHHHcCCCC
Confidence 456899999999999999999998877889999998832 11238999999865 3333332222456
Q ss_pred EEEEEEeCCc--------cc------hHHHHHHHHccCCCCcEEEEeCC
Q 023645 196 YDFAFVDAEK--------RM------YQEYFELLLQLIRVGGIIVIDNV 230 (279)
Q Consensus 196 fDlI~id~~~--------~~------~~~~l~~~~~~Lk~gG~lv~dd~ 230 (279)
+|+|++|..+ ++ ....++.+...|+|||.+++...
T Consensus 112 ~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 112 VDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred cceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 7999998653 11 22345666789999999999754
No 215
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.40 E-value=5.3e-06 Score=74.27 Aligned_cols=106 Identities=20% Similarity=0.308 Sum_probs=83.8
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHH--HHHhC---C-CCcEEEEEcChhhHHHHHHhCC
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKY--YERAG---V-SHKVKIKHGLAADSLKALILNG 191 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~--~~~~g---~-~~~v~~~~gd~~~~l~~~~~~~ 191 (279)
...++||-+|.|-|.-...+.+ .|.-.+|+-+|++|++++.++.+ +...+ + +.|++++..|+..++..-
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a---- 362 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA---- 362 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh----
Confidence 3567999999999988888876 46467999999999999999843 33222 2 468999999999998875
Q ss_pred CCCcEEEEEEeCCcc--------chHHHHHHHHccCCCCcEEEEeC
Q 023645 192 EASSYDFAFVDAEKR--------MYQEYFELLLQLIRVGGIIVIDN 229 (279)
Q Consensus 192 ~~~~fDlI~id~~~~--------~~~~~l~~~~~~Lk~gG~lv~dd 229 (279)
.+.||+|++|-... ...++...+.+.|+++|.+|+..
T Consensus 363 -~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 363 -ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred -cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 57999999985421 23567888889999999999863
No 216
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.39 E-value=3.7e-06 Score=72.44 Aligned_cols=149 Identities=13% Similarity=0.106 Sum_probs=95.4
Q ss_pred CCCCCCCHHHHHHHHHHH-----hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCc
Q 023645 98 GSQMQVSPDQAQLLAMLV-----QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK 172 (279)
Q Consensus 98 ~~~~~~~~~~~~~l~~l~-----~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~ 172 (279)
+..+..+.++.+-+.... ......++||||+|.|..|..++..+. +|++.|.|+.|.. .+++.|.
T Consensus 68 G~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~----rL~~kg~--- 137 (265)
T PF05219_consen 68 GSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRW----RLSKKGF--- 137 (265)
T ss_pred CcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHH----HHHhCCC---
Confidence 334466666654444433 122456899999999999999998875 7999999998853 3444443
Q ss_pred EEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCC-------CC-cccCcc-
Q 023645 173 VKIKHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW-------HG-KVADQM- 240 (279)
Q Consensus 173 v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~-------~g-~~~~~~- 240 (279)
+++. ..+. ... +.+||+|.+-.. ...+...++.+.+.|+|+|.+++.=++- .+ .-..|.
T Consensus 138 -~vl~--~~~w-~~~-----~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e 208 (265)
T PF05219_consen 138 -TVLD--IDDW-QQT-----DFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSE 208 (265)
T ss_pred -eEEe--hhhh-hcc-----CCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchh
Confidence 3332 2222 111 468999987543 4557788999999999999999876652 11 111111
Q ss_pred ----cCChhhHHHHHHHHHhhhCCCeEEEE
Q 023645 241 ----VNDAKTISIRNFNKNLMEDERVSISM 266 (279)
Q Consensus 241 ----~~~~~~~~~~~~~~~l~~~~~~~~~~ 266 (279)
.+......+..|. .+...-+|++..
T Consensus 209 ~l~~~g~~~E~~v~~l~-~v~~p~GF~v~~ 237 (265)
T PF05219_consen 209 LLPVKGATFEEQVSSLV-NVFEPAGFEVER 237 (265)
T ss_pred hcCCCCCcHHHHHHHHH-HHHHhcCCEEEE
Confidence 1112233567777 566788887653
No 217
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.39 E-value=2.7e-06 Score=71.72 Aligned_cols=98 Identities=15% Similarity=0.238 Sum_probs=66.9
Q ss_pred EEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEe
Q 023645 123 CIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVD 202 (279)
Q Consensus 123 VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id 202 (279)
|.||||-.|+..+++.+... ..+++++|+++..++.|+++++..|+.++++++.+|.++.++. .+..|.|++.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~------~e~~d~ivIA 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP------GEDVDTIVIA 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G------GG---EEEEE
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC------CCCCCEEEEe
Confidence 68999999999999998743 4589999999999999999999999999999999999887653 2337888775
Q ss_pred CC-ccchHHHHHHHHccCCCCcEEEE
Q 023645 203 AE-KRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 203 ~~-~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
+. -....+.++.....++....+|+
T Consensus 74 GMGG~lI~~ILe~~~~~~~~~~~lIL 99 (205)
T PF04816_consen 74 GMGGELIIEILEAGPEKLSSAKRLIL 99 (205)
T ss_dssp EE-HHHHHHHHHHTGGGGTT--EEEE
T ss_pred cCCHHHHHHHHHhhHHHhccCCeEEE
Confidence 42 22333444444444444444444
No 218
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.38 E-value=7.3e-07 Score=73.71 Aligned_cols=98 Identities=19% Similarity=0.266 Sum_probs=63.0
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh--HHHHHHhCC--CCC
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD--SLKALILNG--EAS 194 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~--~l~~~~~~~--~~~ 194 (279)
++.+|||+||++|.++..+++...+.++|+++|+.+. ... ..+..+++|..+ ....+.... ..+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~ 90 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGE 90 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhhhhcccccc
Confidence 3479999999999999999998744689999999986 112 236666666643 112221110 126
Q ss_pred cEEEEEEeCCc--------------cchHHHHHHHHccCCCCcEEEEe
Q 023645 195 SYDFAFVDAEK--------------RMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 195 ~fDlI~id~~~--------------~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
+||+|++|... ......+..+...|+|||.+|+.
T Consensus 91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K 138 (181)
T PF01728_consen 91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK 138 (181)
T ss_dssp SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 89999999831 11223455556889999988875
No 219
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.38 E-value=1.7e-06 Score=76.56 Aligned_cols=105 Identities=18% Similarity=0.207 Sum_probs=72.4
Q ss_pred CCCEEEEEcCccCHHHHH----HHHHCC---CCCEEEEEeCChhHHHHHHHHH------------------HH-------
Q 023645 119 GAQRCIEVGVYTGYSSLA----IALVLP---ESGCLVACERDARSLEVAKKYY------------------ER------- 166 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~----la~~~~---~~~~v~~iD~s~~~~~~a~~~~------------------~~------- 166 (279)
++-+|+-.||.+|--... +.+..+ .+.+|+|+|+|+.+++.|++.. ..
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 346999999999974333 333332 1358999999999999988741 11
Q ss_pred -----hCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEe
Q 023645 167 -----AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 167 -----~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
..+.+.|+|...|..+..... .+.||+|||-.. .+.....++.+.+.|+|||+|++-
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~-----~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAV-----PGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCcc-----CCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 012245777777776521111 478999998543 455678899999999999999884
No 220
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.36 E-value=3.8e-06 Score=83.51 Aligned_cols=99 Identities=14% Similarity=0.156 Sum_probs=75.7
Q ss_pred CCCHHHHHHHHHHHhh-cCCCEEEEEcCccCHHHHHHHHHC---CC----------------------------------
Q 023645 102 QVSPDQAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVL---PE---------------------------------- 143 (279)
Q Consensus 102 ~~~~~~~~~l~~l~~~-~~~~~VLEiG~G~G~~t~~la~~~---~~---------------------------------- 143 (279)
.+.+..+..+..++.. .++..++|-+||+|.+.+..+... ++
T Consensus 172 pl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~ 251 (702)
T PRK11783 172 PLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG 251 (702)
T ss_pred CCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 3455555555566654 456799999999999998876531 11
Q ss_pred ----CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC
Q 023645 144 ----SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE 204 (279)
Q Consensus 144 ----~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~ 204 (279)
..+++|+|+++++++.|++|+..+|+.+.+++.++|+.+..... ..++||+|+++++
T Consensus 252 ~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~----~~~~~d~IvtNPP 312 (702)
T PRK11783 252 LAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL----PKGPTGLVISNPP 312 (702)
T ss_pred ccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc----ccCCCCEEEECCC
Confidence 23799999999999999999999999988999999997653211 1257999999977
No 221
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.36 E-value=5.4e-06 Score=79.86 Aligned_cols=84 Identities=13% Similarity=0.034 Sum_probs=60.0
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCC-------CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPE-------SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG 191 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~-------~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~ 191 (279)
...+|||.|||+|.+...++..++. ..+++|+|+++..+..++.++...+. ..+.+..+|.......... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~-~ 108 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIE-S 108 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccc-c
Confidence 3458999999999999998876631 24789999999999999999887652 2356676665532111100 0
Q ss_pred CCCcEEEEEEeCC
Q 023645 192 EASSYDFAFVDAE 204 (279)
Q Consensus 192 ~~~~fDlI~id~~ 204 (279)
..++||+|+.+++
T Consensus 109 ~~~~fD~IIgNPP 121 (524)
T TIGR02987 109 YLDLFDIVITNPP 121 (524)
T ss_pred ccCcccEEEeCCC
Confidence 1368999998876
No 222
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.35 E-value=2.3e-06 Score=73.30 Aligned_cols=95 Identities=14% Similarity=0.128 Sum_probs=58.2
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEE-EEEcChhhHHHHHHhCCCCCcE
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK-IKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~-~~~gd~~~~l~~~~~~~~~~~f 196 (279)
.++++|||+|||+|.++..+++. + ..+|+++|++++++.. .+.. ..++. +...|+......... .+-..+
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~---~l~~---~~~v~~~~~~ni~~~~~~~~~-~d~~~~ 144 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAE---KLRQ---DERVKVLERTNIRYVTPADIF-PDFATF 144 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHH---HHhc---CCCeeEeecCCcccCCHhHcC-CCceee
Confidence 35679999999999999999986 2 3689999999987754 1111 12222 222233211111000 012467
Q ss_pred EEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
|++|+... ..+..+.++|++ |.+++
T Consensus 145 DvsfiS~~-----~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 145 DVSFISLI-----SILPELDLLLNP-NDLTL 169 (228)
T ss_pred eEEEeehH-----hHHHHHHHHhCc-CeEEE
Confidence 77776533 357788888999 66654
No 223
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.35 E-value=4.1e-06 Score=70.68 Aligned_cols=113 Identities=20% Similarity=0.196 Sum_probs=68.4
Q ss_pred HhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHH-------HhCC-CCcEEEEEcChhhH--H
Q 023645 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE-------RAGV-SHKVKIKHGLAADS--L 184 (279)
Q Consensus 115 ~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~-------~~g~-~~~v~~~~gd~~~~--l 184 (279)
+...+....+|||||.|...+..+...+ -.+.+|||+.+...+.|+...+ ..|. ..++++.++|+.+. .
T Consensus 38 ~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~ 116 (205)
T PF08123_consen 38 LNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFV 116 (205)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHH
T ss_pred hCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhH
Confidence 3455667999999999999888876654 3469999999998887765433 2233 34688999998753 2
Q ss_pred HHHHhCCCCCcEEEEEEeCC--ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645 185 KALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVLWH 233 (279)
Q Consensus 185 ~~~~~~~~~~~fDlI~id~~--~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~ 233 (279)
..+ -..-|+||++.. .+.....+......||+|..||--.-+.+
T Consensus 117 ~~~-----~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~~~~~ 162 (205)
T PF08123_consen 117 KDI-----WSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTKPFCP 162 (205)
T ss_dssp HHH-----GHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS-SS-
T ss_pred hhh-----hcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECCCcCC
Confidence 222 145789999875 34455666777788999988886444433
No 224
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.35 E-value=8.3e-06 Score=71.39 Aligned_cols=104 Identities=15% Similarity=0.223 Sum_probs=74.1
Q ss_pred CCCEEEEEcCccCH----HHHHHHHHCCC----CCEEEEEeCChhHHHHHHHHHHH-----hCCC---------------
Q 023645 119 GAQRCIEVGVYTGY----SSLAIALVLPE----SGCLVACERDARSLEVAKKYYER-----AGVS--------------- 170 (279)
Q Consensus 119 ~~~~VLEiG~G~G~----~t~~la~~~~~----~~~v~~iD~s~~~~~~a~~~~~~-----~g~~--------------- 170 (279)
.+-+|+-.||++|- .++.+.+.++. ..+|+|.|+|...++.|+...=. .++.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 36799999999996 44445555542 46899999999999988752110 1111
Q ss_pred --------CcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEe
Q 023645 171 --------HKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 171 --------~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
..|+|...|..+..+ . .+.||+|||-.. .+.....++..+..|+|||+|++-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~-~-----~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP-F-----LGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc-c-----cCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 346677776655332 2 578999998654 455677899999999999999984
No 225
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.22 E-value=2.8e-06 Score=71.23 Aligned_cols=105 Identities=18% Similarity=0.230 Sum_probs=65.1
Q ss_pred CCCEEEEEcCccCHHHHHH----HHHC----CCCCEEEEEeCChhHHHHHHHH--------------HHHh-----C---
Q 023645 119 GAQRCIEVGVYTGYSSLAI----ALVL----PESGCLVACERDARSLEVAKKY--------------YERA-----G--- 168 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~l----a~~~----~~~~~v~~iD~s~~~~~~a~~~--------------~~~~-----g--- 168 (279)
++-+|+-.||++|.-...+ .+.. +...+|+|.|+|+.+++.|++. .++. +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4559999999999743332 3311 1135899999999999998762 1110 0
Q ss_pred -----CCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeC
Q 023645 169 -----VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDN 229 (279)
Q Consensus 169 -----~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd 229 (279)
+.+.|+|...|..+..+. .+.||+|||-.. .+.....++.+...|+|||+|++-.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~------~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPP------FGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcc------cCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 114689999998872222 589999999765 4445678999999999999999843
No 226
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.21 E-value=1.5e-05 Score=72.55 Aligned_cols=121 Identities=18% Similarity=0.204 Sum_probs=92.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCC---C----------------------------CC-----
Q 023645 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP---E----------------------------SG----- 145 (279)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~---~----------------------------~~----- 145 (279)
.+.+..+.-|..++.-.+...++|-=||+|.+.+..|...+ + .+
T Consensus 174 pLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~ 253 (381)
T COG0116 174 PLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKE 253 (381)
T ss_pred CchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCc
Confidence 34555556666666666778999999999999988776542 1 11
Q ss_pred --EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCcc-----------chHHHH
Q 023645 146 --CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-----------MYQEYF 212 (279)
Q Consensus 146 --~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~-----------~~~~~l 212 (279)
.++|+|+++.+++.|+.|.+.+|+.+.|+|.++|+...-+. .+.+|+|+++++.. -|..+.
T Consensus 254 ~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~------~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg 327 (381)
T COG0116 254 LPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP------LEEYGVVISNPPYGERLGSEALVAKLYREFG 327 (381)
T ss_pred cceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC------CCcCCEEEeCCCcchhcCChhhHHHHHHHHH
Confidence 37899999999999999999999999999999999754321 16899999998721 355566
Q ss_pred HHHHccCCCCcEEEEe
Q 023645 213 ELLLQLIRVGGIIVID 228 (279)
Q Consensus 213 ~~~~~~Lk~gG~lv~d 228 (279)
+.+.+.++..+..|+.
T Consensus 328 ~~lk~~~~~ws~~v~t 343 (381)
T COG0116 328 RTLKRLLAGWSRYVFT 343 (381)
T ss_pred HHHHHHhcCCceEEEE
Confidence 6666778887777763
No 227
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.19 E-value=7.1e-06 Score=74.73 Aligned_cols=111 Identities=18% Similarity=0.268 Sum_probs=88.4
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
..++.+|||+.+..|.-|.++|..+...|.|++.|.+...+...+.++.+.|+.+ ..+...|..++..... .++|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~----~~~f 313 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEF----PGSF 313 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCccccccccc----Cccc
Confidence 3467899999999999999999998878999999999999999999999999876 5666677765432221 3489
Q ss_pred EEEEEeCCccc-------------------------hHHHHHHHHccCCCCcEEEEeCCCC
Q 023645 197 DFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIVIDNVLW 232 (279)
Q Consensus 197 DlI~id~~~~~-------------------------~~~~l~~~~~~Lk~gG~lv~dd~~~ 232 (279)
|-|++|++... ..+.|..+..++++||+||...+-.
T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 99999976211 2456777789999999999876643
No 228
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.19 E-value=3.5e-06 Score=68.84 Aligned_cols=98 Identities=17% Similarity=0.207 Sum_probs=77.6
Q ss_pred CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (279)
Q Consensus 121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~ 200 (279)
..+.|+|+|+|..+...+.+. .+|++||.+|...+.|++|+.-.|.. +++++.||+.+.- -+.-|+|+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~~-n~evv~gDA~~y~--------fe~ADvvi 101 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGDV-NWEVVVGDARDYD--------FENADVVI 101 (252)
T ss_pred hceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCCc-ceEEEeccccccc--------ccccceeH
Confidence 589999999999999888873 49999999999999999999777775 4999999998652 24678887
Q ss_pred EeCC-----ccchHHHHHHHHccCCCCcEEEEeCC
Q 023645 201 VDAE-----KRMYQEYFELLLQLIRVGGIIVIDNV 230 (279)
Q Consensus 201 id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd~ 230 (279)
|..- .+.....+..+...||..+.++-..+
T Consensus 102 cEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v 136 (252)
T COG4076 102 CEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQEV 136 (252)
T ss_pred HHHhhHHhhcccccHHHHHHHHHhhcCCccccHHH
Confidence 6421 33445677788889999988875444
No 229
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.18 E-value=2.2e-05 Score=65.60 Aligned_cols=106 Identities=19% Similarity=0.188 Sum_probs=82.1
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
.++.+||++|-|.|.....+-++-| .+-+-||.+|+.++..+..-- .-.++|.+..|...+.++.+. ++.||
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p--~~H~IiE~hp~V~krmr~~gw--~ek~nViil~g~WeDvl~~L~----d~~FD 171 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP--DEHWIIEAHPDVLKRMRDWGW--REKENVIILEGRWEDVLNTLP----DKHFD 171 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC--cceEEEecCHHHHHHHHhccc--ccccceEEEecchHhhhcccc----ccCcc
Confidence 5788999999999998888777644 456778999998866655322 234678999999988887774 56799
Q ss_pred EEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645 198 FAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL 231 (279)
Q Consensus 198 lI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~ 231 (279)
-|+-|.- .++...+.+.+.++|||+|++-+-|-+
T Consensus 172 GI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~ 208 (271)
T KOG1709|consen 172 GIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGL 208 (271)
T ss_pred eeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCc
Confidence 9999975 445566788889999999999875544
No 230
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.17 E-value=2.9e-05 Score=68.14 Aligned_cols=120 Identities=14% Similarity=0.132 Sum_probs=84.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (279)
Q Consensus 101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~ 180 (279)
..+++...+-+...+...++..|||||+|.|.+|..+++.. .+++++|+++.+.+..++.+. ...+++++.+|+
T Consensus 12 FL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~ 85 (262)
T PF00398_consen 12 FLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDF 85 (262)
T ss_dssp EEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-T
T ss_pred eeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh---hcccceeeecch
Confidence 34566666666666676788899999999999999999885 699999999999988888665 345799999999
Q ss_pred hhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCC---CcEEEEeC
Q 023645 181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRV---GGIIVIDN 229 (279)
Q Consensus 181 ~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~---gG~lv~dd 229 (279)
.++-..... ......|+.+-+..-....+..+...-+. ..++++..
T Consensus 86 l~~~~~~~~---~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq~ 134 (262)
T PF00398_consen 86 LKWDLYDLL---KNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQK 134 (262)
T ss_dssp TTSCGGGHC---SSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEEH
T ss_pred hccccHHhh---cCCceEEEEEecccchHHHHHHHhhcccccccceEEEEeh
Confidence 874221000 23566777776665555666666653333 35555543
No 231
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.15 E-value=4e-05 Score=68.90 Aligned_cols=109 Identities=14% Similarity=0.014 Sum_probs=76.7
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCC---CCEEEEEeCChhHHHHHHHHHHHhCCCC-cEEEEEcChhhHHHHHHhCCCCC
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPE---SGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKALILNGEAS 194 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~---~~~v~~iD~s~~~~~~a~~~~~~~g~~~-~v~~~~gd~~~~l~~~~~~~~~~ 194 (279)
++..++|+|||.|.-+..+++++.+ ..+++++|+|.++++.+.+.+....... .+.-++||+.+.+..+.......
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 4458999999999999888887642 3579999999999999999887333322 24448999977654332110023
Q ss_pred cEEEEEEeC------CccchHHHHHHHHc-cCCCCcEEEE
Q 023645 195 SYDFAFVDA------EKRMYQEYFELLLQ-LIRVGGIIVI 227 (279)
Q Consensus 195 ~fDlI~id~------~~~~~~~~l~~~~~-~Lk~gG~lv~ 227 (279)
...+++.-+ .......+++.+.+ .|+|||.+++
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 355665433 24456678889988 9999998887
No 232
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.13 E-value=2e-05 Score=62.58 Aligned_cols=64 Identities=20% Similarity=0.287 Sum_probs=51.9
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHC---CCCCEEEEEeCChhHHHHHHHHHHHhC--CCCcEEEEEcChh
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYERAG--VSHKVKIKHGLAA 181 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~g--~~~~v~~~~gd~~ 181 (279)
.+..+|+|+|||.|+.+..++..+ ..+.+|+++|.++...+.+.+..+..+ +..++++..++..
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 92 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIA 92 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchh
Confidence 567899999999999999999833 136799999999999999999888777 4455666666554
No 233
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.11 E-value=1.1e-05 Score=63.74 Aligned_cols=58 Identities=21% Similarity=0.231 Sum_probs=50.5
Q ss_pred EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (279)
Q Consensus 122 ~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~ 181 (279)
+++|||||.|..+.++++..+ .++++++|++|.+.+.++++++.+++.+ ++++.....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeee
Confidence 489999999999999998876 5699999999999999999999888764 888776654
No 234
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.11 E-value=4.9e-05 Score=67.71 Aligned_cols=84 Identities=24% Similarity=0.171 Sum_probs=68.7
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
..++..++|.-+|.|.-|..+++.++ .++|+|+|.++.+++.+++.++.. .++++++++++.+....+...+ ..++
T Consensus 18 ~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~~-~~~v 93 (305)
T TIGR00006 18 IKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDELL-VTKI 93 (305)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhcC-CCcc
Confidence 34567999999999999999999987 499999999999999999988753 4689999999987655443222 3579
Q ss_pred EEEEEeCC
Q 023645 197 DFAFVDAE 204 (279)
Q Consensus 197 DlI~id~~ 204 (279)
|.|+.|-+
T Consensus 94 DgIl~DLG 101 (305)
T TIGR00006 94 DGILVDLG 101 (305)
T ss_pred cEEEEecc
Confidence 99998855
No 235
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=98.06 E-value=8.9e-05 Score=60.89 Aligned_cols=146 Identities=16% Similarity=0.182 Sum_probs=96.2
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHC---CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645 104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (279)
Q Consensus 104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~ 180 (279)
+|...-.++.++-...|..|+|+|+-.|.+++++|... +...+|.++|++-..+.-+... ..+|.|+.|+.
T Consensus 54 ~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egss 127 (237)
T COG3510 54 SPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGSS 127 (237)
T ss_pred CHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCCC
Confidence 45555566777778899999999999999999988753 3336899999987654332221 34699999998
Q ss_pred hhH--HHHHHhCCCCCcEEEEEEeCC--ccchHHHHHHHHccCCCCcEEEEeCCCCCCcccC--cc-cCChhhHHHHHHH
Q 023645 181 ADS--LKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD--QM-VNDAKTISIRNFN 253 (279)
Q Consensus 181 ~~~--l~~~~~~~~~~~fDlI~id~~--~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~--~~-~~~~~~~~~~~~~ 253 (279)
.+. ..+.......-+-=+|+.|.+ .++....++...++|.-|-++++.|....+.... |. .......++.+|+
T Consensus 128 ~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g~gP~~AVe~yl 207 (237)
T COG3510 128 TDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFGGGPYEAVEAYL 207 (237)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCCcccchhcCCChHHHHHHHH
Confidence 652 111110000112223445544 5567777888889999999999999888776642 22 2344455676666
Q ss_pred HH
Q 023645 254 KN 255 (279)
Q Consensus 254 ~~ 255 (279)
+.
T Consensus 208 r~ 209 (237)
T COG3510 208 RE 209 (237)
T ss_pred Hh
Confidence 54
No 236
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.04 E-value=2.1e-05 Score=72.32 Aligned_cols=105 Identities=16% Similarity=0.238 Sum_probs=80.9
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCC-cEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKALILNGEASSYDF 198 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~-~v~~~~gd~~~~l~~~~~~~~~~~fDl 198 (279)
+.+|||.=+|+|.=++..+..++...+|+.-|+|+++++..++|++.+++.+ ++++.+.|+...+... ...||+
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~-----~~~fD~ 124 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSR-----QERFDV 124 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHS-----TT-EEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhc-----cccCCE
Confidence 4589999999999999999887645699999999999999999999999987 7999999998766322 589999
Q ss_pred EEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645 199 AFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (279)
Q Consensus 199 I~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~ 230 (279)
|=+|+- .....|++.+.+.++.||+|.+...
T Consensus 125 IDlDPf-GSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 125 IDLDPF-GSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp EEE--S-S--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred EEeCCC-CCccHhHHHHHHHhhcCCEEEEecc
Confidence 988863 4456899999999999999999543
No 237
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.03 E-value=5.3e-05 Score=63.94 Aligned_cols=105 Identities=15% Similarity=0.143 Sum_probs=72.6
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
+.++.+||=+|.++|...-.++.-.+++|.|+++|.++...+..-...++ ..++-.+.+|+........ --+..
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~---R~NIiPIl~DAr~P~~Y~~---lv~~V 144 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK---RPNIIPILEDARHPEKYRM---LVEMV 144 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH---STTEEEEES-TTSGGGGTT---TS--E
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc---CCceeeeeccCCChHHhhc---ccccc
Confidence 45678999999999999999999988789999999999765444333332 3458888899864211100 03689
Q ss_pred EEEEEeCCccchHH-HHHHHHccCCCCcEEEE
Q 023645 197 DFAFVDAEKRMYQE-YFELLLQLIRVGGIIVI 227 (279)
Q Consensus 197 DlI~id~~~~~~~~-~l~~~~~~Lk~gG~lv~ 227 (279)
|+||.|....+..+ +...+...||+||.+++
T Consensus 145 DvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i 176 (229)
T PF01269_consen 145 DVIFQDVAQPDQARIAALNARHFLKPGGHLII 176 (229)
T ss_dssp EEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred cEEEecCCChHHHHHHHHHHHhhccCCcEEEE
Confidence 99999987655444 55666689999998886
No 238
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.00 E-value=9.2e-05 Score=66.35 Aligned_cols=98 Identities=14% Similarity=0.099 Sum_probs=76.5
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI 199 (279)
-...+|+|.|.|..+..+...+| +|-+++.+...+..++.++. .| |+.+.||.+...| +-|+|
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P---------~~daI 240 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTP---------KGDAI 240 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-CC----cceecccccccCC---------CcCeE
Confidence 36899999999999999998776 68999999988888777775 44 7888888876543 33588
Q ss_pred EEe-----CCccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645 200 FVD-----AEKRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234 (279)
Q Consensus 200 ~id-----~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g 234 (279)
|+- ..-++...+|+.++..|+|||.|++-+.+.+.
T Consensus 241 ~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 241 WMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred EEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 763 23556788999999999999987776665443
No 239
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=97.99 E-value=9e-05 Score=64.79 Aligned_cols=142 Identities=20% Similarity=0.301 Sum_probs=106.4
Q ss_pred hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh--CC-CCcEEEEEcChhhHHHHHHhCCC
Q 023645 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GV-SHKVKIKHGLAADSLKALILNGE 192 (279)
Q Consensus 116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--g~-~~~v~~~~gd~~~~l~~~~~~~~ 192 (279)
++..+++||-||-|-|.......+. +.-..++-+|++...++..++++... |. ..+|.++.||...+++...
T Consensus 118 s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~---- 192 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK---- 192 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc----
Confidence 3567899999999999887776655 33468999999999999999988753 33 3579999999998887663
Q ss_pred CCcEEEEEEeCCc-------cchHHHHHHHHccCCCCcEEEEeC-CCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEE
Q 023645 193 ASSYDFAFVDAEK-------RMYQEYFELLLQLIRVGGIIVIDN-VLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSI 264 (279)
Q Consensus 193 ~~~fDlI~id~~~-------~~~~~~l~~~~~~Lk~gG~lv~dd-~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 264 (279)
.++||+|+.|.+. -....+++.+.+.||+||+++... ..|- .......+++|-+.+...-.+-.
T Consensus 193 ~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl--------~~~~i~e~r~~~~~~f~~t~ya~ 264 (337)
T KOG1562|consen 193 ENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWL--------HLDYIKEGRSFCYVIFDLTAYAI 264 (337)
T ss_pred cCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehH--------HHHHHHHHHHhHHHhcCccceee
Confidence 5899999998651 124568888899999999998742 3331 11223346778888877777888
Q ss_pred EEeecC
Q 023645 265 SMVPIG 270 (279)
Q Consensus 265 ~~lp~~ 270 (279)
+..|..
T Consensus 265 ttvPTy 270 (337)
T KOG1562|consen 265 TTVPTY 270 (337)
T ss_pred ecCCCC
Confidence 888863
No 240
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.96 E-value=2.4e-05 Score=65.38 Aligned_cols=120 Identities=14% Similarity=0.149 Sum_probs=72.6
Q ss_pred HHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHH
Q 023645 107 QAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA 186 (279)
Q Consensus 107 ~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~ 186 (279)
...++..+....+...|-|+|||-+..+. .++....|...|+... ++ .++.+|.... |-
T Consensus 60 vd~iI~~l~~~~~~~viaD~GCGdA~la~----~~~~~~~V~SfDLva~--------------n~--~Vtacdia~v-PL 118 (219)
T PF05148_consen 60 VDVIIEWLKKRPKSLVIADFGCGDAKLAK----AVPNKHKVHSFDLVAP--------------NP--RVTACDIANV-PL 118 (219)
T ss_dssp HHHHHHHHCTS-TTS-EEEES-TT-HHHH----H--S---EEEEESS-S--------------ST--TEEES-TTS--S-
T ss_pred HHHHHHHHHhcCCCEEEEECCCchHHHHH----hcccCceEEEeeccCC--------------CC--CEEEecCccC-cC
Confidence 34556666666556799999999998764 3443457999999752 22 3566777543 22
Q ss_pred HHhCCCCCcEEEEEEeCC--ccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEE
Q 023645 187 LILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSI 264 (279)
Q Consensus 187 ~~~~~~~~~fDlI~id~~--~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 264 (279)
+++..|+++..-. -.++..++.++.|.||+||.|.|..+..+=. .+.+|.+.+. .=+|..
T Consensus 119 -----~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~------------~~~~F~~~~~-~~GF~~ 180 (219)
T PF05148_consen 119 -----EDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRFE------------NVKQFIKALK-KLGFKL 180 (219)
T ss_dssp ------TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-------------HHHHHHHHH-CTTEEE
T ss_pred -----CCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccCc------------CHHHHHHHHH-HCCCeE
Confidence 1689999876544 5578899999999999999999987753211 3577877764 335554
Q ss_pred E
Q 023645 265 S 265 (279)
Q Consensus 265 ~ 265 (279)
.
T Consensus 181 ~ 181 (219)
T PF05148_consen 181 K 181 (219)
T ss_dssp E
T ss_pred E
Confidence 3
No 241
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.92 E-value=0.00017 Score=60.67 Aligned_cols=101 Identities=16% Similarity=0.216 Sum_probs=79.3
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI 199 (279)
+.++.||||-.|+...++.+..+ ..++++.|+++..++.|.++++.+++.+++++..+|.+..+.. ++.+|.|
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~------~d~~d~i 89 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL------EDEIDVI 89 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc------cCCcCEE
Confidence 44599999999999999998766 6789999999999999999999999999999999999765432 4589999
Q ss_pred EEeCC-ccchHHHHHHHHccCCCCcEEEE
Q 023645 200 FVDAE-KRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 200 ~id~~-~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
++.+- -.-....+++-...|+.--.+|+
T Consensus 90 vIAGMGG~lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 90 VIAGMGGTLIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred EEeCCcHHHHHHHHHHhhhhhcCcceEEE
Confidence 88654 33344566666555554334554
No 242
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.91 E-value=3.3e-05 Score=63.95 Aligned_cols=105 Identities=16% Similarity=0.211 Sum_probs=77.1
Q ss_pred EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCC------CCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV------SHKVKIKHGLAADSLKALILNGEASS 195 (279)
Q Consensus 122 ~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~------~~~v~~~~gd~~~~l~~~~~~~~~~~ 195 (279)
.+.|||||.|...+.++..+| +.-+.|+|+-....+..++.+...+. -.++.+...++..+++.+...|+-.+
T Consensus 63 efaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk 141 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK 141 (249)
T ss_pred eEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccccc
Confidence 689999999999999999998 67899999999999999988886651 23478888888888888776543222
Q ss_pred EEEEEEeCC--------ccchHHHHHHHHccCCCCcEEEE
Q 023645 196 YDFAFVDAE--------KRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 196 fDlI~id~~--------~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
-=+.|-|.. .-....++.+..=+|++||.++.
T Consensus 142 mff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yt 181 (249)
T KOG3115|consen 142 MFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYT 181 (249)
T ss_pred ceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEE
Confidence 112222322 11134567777788999998765
No 243
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.90 E-value=1.2e-05 Score=74.96 Aligned_cols=158 Identities=11% Similarity=0.136 Sum_probs=81.2
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhc-------CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeC---ChhHHHHHHHHHH
Q 023645 96 MRGSQMQVSPDQAQLLAMLVQIL-------GAQRCIEVGVYTGYSSLAIALVLPESGCLVACER---DARSLEVAKKYYE 165 (279)
Q Consensus 96 ~~~~~~~~~~~~~~~l~~l~~~~-------~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~---s~~~~~~a~~~~~ 165 (279)
+|+..-+.......++..+.+.. .-+.+||+|||+|.++.+|.+. +..+.++-. .+..++.|-
T Consensus 87 FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~~~qvqfal---- 159 (506)
T PF03141_consen 87 FPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER---NVTTMSFAPNDEHEAQVQFAL---- 159 (506)
T ss_pred eCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC---CceEEEcccccCCchhhhhhh----
Confidence 34443333444455555544433 2247899999999999999875 223333322 222333332
Q ss_pred HhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeC----CccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCccc
Q 023645 166 RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA----EKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMV 241 (279)
Q Consensus 166 ~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~----~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~ 241 (279)
+-|+..-+.+. ...-+|.. +..||+|-+.. +...-.-+|-++-++|||||+++....-.... .+..
T Consensus 160 eRGvpa~~~~~---~s~rLPfp-----~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r--~~~~ 229 (506)
T PF03141_consen 160 ERGVPAMIGVL---GSQRLPFP-----SNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQR--TDED 229 (506)
T ss_pred hcCcchhhhhh---ccccccCC-----ccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccccc--chHH
Confidence 22332211111 11223322 68999997643 22222346777889999999999765433200 0000
Q ss_pred CChhhHHHHHH-----HHHhhhCCCeEEEEeecC
Q 023645 242 NDAKTISIRNF-----NKNLMEDERVSISMVPIG 270 (279)
Q Consensus 242 ~~~~~~~~~~~-----~~~l~~~~~~~~~~lp~~ 270 (279)
....-.+|.++ ++.+....++-+..=|..
T Consensus 230 ~~~~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~ 263 (506)
T PF03141_consen 230 LEEEWNAMEDLAKSLCWKKVAEKGDTAIWQKPTN 263 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeCCEEEEeccCC
Confidence 11122245555 445556666655555543
No 244
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.88 E-value=6.2e-05 Score=66.74 Aligned_cols=81 Identities=20% Similarity=0.343 Sum_probs=49.6
Q ss_pred CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh-CCCCcEEEEEcChhh-HHHHHHhCCCCCcEEE
Q 023645 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKHGLAAD-SLKALILNGEASSYDF 198 (279)
Q Consensus 121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-g~~~~v~~~~gd~~~-~l~~~~~~~~~~~fDl 198 (279)
.++||||||...+=-.|+.... +.+++|.|+++..++.|+++++.+ ++.++|+++...-.. .+..+.. ..+.||+
T Consensus 104 v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~--~~e~~df 180 (299)
T PF05971_consen 104 VRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ--PNERFDF 180 (299)
T ss_dssp -EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT----S-EEE
T ss_pred eEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc--ccceeeE
Confidence 4799999987654333333332 589999999999999999999999 999999998764322 2222221 1468999
Q ss_pred EEEeCC
Q 023645 199 AFVDAE 204 (279)
Q Consensus 199 I~id~~ 204 (279)
.+|+++
T Consensus 181 tmCNPP 186 (299)
T PF05971_consen 181 TMCNPP 186 (299)
T ss_dssp EEE---
T ss_pred EecCCc
Confidence 999987
No 245
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.84 E-value=7.1e-05 Score=66.11 Aligned_cols=97 Identities=13% Similarity=0.145 Sum_probs=61.9
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
..|++|||+|||.|..+..+...++.-.+++++|.|+.+.+.++..++.......... ..+.. .... +..+.|
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~-~~~~~---~~~~---~~~~~D 104 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEW-RRVLY---RDFL---PFPPDD 104 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchh-hhhhh---cccc---cCCCCc
Confidence 4678999999999987777777777446899999999999999997764322111111 11111 0000 123449
Q ss_pred EEEEeCC-----ccchHHHHHHHHccCCC
Q 023645 198 FAFVDAE-----KRMYQEYFELLLQLIRV 221 (279)
Q Consensus 198 lI~id~~-----~~~~~~~l~~~~~~Lk~ 221 (279)
+|++... ......+++.++..+.+
T Consensus 105 Lvi~s~~L~EL~~~~r~~lv~~LW~~~~~ 133 (274)
T PF09243_consen 105 LVIASYVLNELPSAARAELVRSLWNKTAP 133 (274)
T ss_pred EEEEehhhhcCCchHHHHHHHHHHHhccC
Confidence 9987643 23455667777776666
No 246
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.80 E-value=0.00025 Score=54.78 Aligned_cols=105 Identities=21% Similarity=0.274 Sum_probs=68.9
Q ss_pred EEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH-HHHHHhCCCC-CcEEEEE
Q 023645 123 CIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS-LKALILNGEA-SSYDFAF 200 (279)
Q Consensus 123 VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~-l~~~~~~~~~-~~fDlI~ 200 (279)
++|+|||+|..+ .+....+....++++|.++.++..++......+.. .+.+..++.... ++.. . ..||++.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~d~~~ 124 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLG-LVDFVVADALGGVLPFE-----DSASFDLVI 124 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCC-ceEEEEeccccCCCCCC-----CCCceeEEe
Confidence 999999999987 44443332248999999999988855444321111 157777776542 2211 2 3799993
Q ss_pred EeCCcc--chHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645 201 VDAEKR--MYQEYFELLLQLIRVGGIIVIDNVLWHG 234 (279)
Q Consensus 201 id~~~~--~~~~~l~~~~~~Lk~gG~lv~dd~~~~g 234 (279)
...... .....+..+.+.++|+|.+++.......
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 125 SLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred eeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 333211 1467888999999999999987766544
No 247
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.71 E-value=0.00014 Score=60.08 Aligned_cols=98 Identities=15% Similarity=0.213 Sum_probs=70.2
Q ss_pred hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (279)
Q Consensus 116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~ 195 (279)
+...+++|||+|+|+|..++..++.. ...|++.|+.|......+-|.+.+|.. +.+...|... . +..
T Consensus 76 etVrgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g--~-------~~~ 142 (218)
T COG3897 76 ETVRGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG--S-------PPA 142 (218)
T ss_pred cccccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC--C-------Ccc
Confidence 34568999999999999999888764 358999999999988888899888864 7888777653 1 678
Q ss_pred EEEEEEeCC---ccchHHHHHHHHccCCCCcEEEE
Q 023645 196 YDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 196 fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
||+++.... +......+. +...|+..|.-|+
T Consensus 143 ~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 143 FDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred eeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEE
Confidence 999986432 333334444 4444444444444
No 248
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.70 E-value=0.00066 Score=58.09 Aligned_cols=98 Identities=20% Similarity=0.254 Sum_probs=62.7
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
..+++||-+|=.--. ++.++.... ..+|+.+|+++..++..++..++.|+. ++.++.|..+.+|.-. .++||
T Consensus 43 L~gk~il~lGDDDLt-SlA~al~~~-~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~----~~~fD 114 (243)
T PF01861_consen 43 LEGKRILFLGDDDLT-SLALALTGL-PKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEEL----RGKFD 114 (243)
T ss_dssp STT-EEEEES-TT-H-HHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTT----SS-BS
T ss_pred ccCCEEEEEcCCcHH-HHHHHhhCC-CCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHH----hcCCC
Confidence 468899999965443 444443332 479999999999999999999999986 9999999988776432 58999
Q ss_pred EEEEeCC--ccchHHHHHHHHccCCCCc
Q 023645 198 FAFVDAE--KRMYQEYFELLLQLIRVGG 223 (279)
Q Consensus 198 lI~id~~--~~~~~~~l~~~~~~Lk~gG 223 (279)
++|.|++ .+...-++......||.-|
T Consensus 115 ~f~TDPPyT~~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 115 VFFTDPPYTPEGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp EEEE---SSHHHHHHHHHHHHHTB-STT
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 9999987 5667788889988998776
No 249
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.69 E-value=0.00058 Score=56.02 Aligned_cols=104 Identities=16% Similarity=0.194 Sum_probs=69.6
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc-ChhhH--HHHHHhCCCCC
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADS--LKALILNGEAS 194 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~--l~~~~~~~~~~ 194 (279)
.+..+|||+||..|.|+...-+...+.+.|.|||+-+-. .. ..++++.+ |+.+. ...+.+.-...
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-----------p~-~Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-----------PP-EGATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-----------CC-CCcccccccccCCHHHHHHHHHhCCCC
Confidence 457799999999999999998888668999999985421 12 23566666 55432 22222222357
Q ss_pred cEEEEEEeCCc-------cchH-------HHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645 195 SYDFAFVDAEK-------RMYQ-------EYFELLLQLIRVGGIIVIDNVLWHGK 235 (279)
Q Consensus 195 ~fDlI~id~~~-------~~~~-------~~l~~~~~~Lk~gG~lv~dd~~~~g~ 235 (279)
+.|+|+.|..+ .+.. ..+..+...++|+|.+++. +|.|.
T Consensus 136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK--~w~g~ 188 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK--LWDGS 188 (232)
T ss_pred cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE--EecCC
Confidence 89999998531 1112 2333445788999999996 67775
No 250
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00018 Score=61.19 Aligned_cols=98 Identities=14% Similarity=0.102 Sum_probs=72.3
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE-cChhhHHHHHHhCCCCCcE
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNGEASSY 196 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~-gd~~~~l~~~~~~~~~~~f 196 (279)
.+++.+||||+-||.+|..+++.- ..+|+++|..-..+..- + ..+.++.... .++....+... .+..
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~k---L---R~d~rV~~~E~tN~r~l~~~~~----~~~~ 145 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWK---L---RNDPRVIVLERTNVRYLTPEDF----TEKP 145 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHh---H---hcCCcEEEEecCChhhCCHHHc----ccCC
Confidence 467899999999999999999863 35999999988665432 1 1234555443 34443322221 3578
Q ss_pred EEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
|++++|.........+..+..+++++|.++.
T Consensus 146 d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 146 DLIVIDVSFISLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred CeEEEEeehhhHHHHHHHHHHhcCCCceEEE
Confidence 9999999988888899999999999987775
No 251
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.67 E-value=0.00065 Score=59.24 Aligned_cols=164 Identities=12% Similarity=0.121 Sum_probs=86.4
Q ss_pred CCChhHHHHHHhccCChHHHHHHHHHHHc-cCCCCCCCCHHHHHH----HHHHHhhcCCCEEEEEcCcc--CHHHHHHHH
Q 023645 67 SVTPPLYDYILRNVREPEILRQLREETAG-MRGSQMQVSPDQAQL----LAMLVQILGAQRCIEVGVYT--GYSSLAIAL 139 (279)
Q Consensus 67 ~~~~~l~~Y~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~----l~~l~~~~~~~~VLEiG~G~--G~~t~~la~ 139 (279)
....++++|+...-...+.=+++-+.... .|. ...+-...-.| +..++....-...||||||- -..+..+++
T Consensus 12 P~~ARvYDy~LGGkdnf~vDR~~a~~~~~~~P~-~~~~ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq 90 (267)
T PF04672_consen 12 PSPARVYDYLLGGKDNFAVDREAAERLLAAAPE-IREAARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQ 90 (267)
T ss_dssp --HHHHHHHHCT-SS--HHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHH
T ss_pred CcHHHHHHHHhCCccCCHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHH
Confidence 34467888888754443333333322221 221 11111222223 33344444667999999993 346777888
Q ss_pred HCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC------C-CCcEEEEEEe-----CCccc
Q 023645 140 VLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG------E-ASSYDFAFVD-----AEKRM 207 (279)
Q Consensus 140 ~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~------~-~~~fDlI~id-----~~~~~ 207 (279)
...++++|+-+|.+|-.+..++..+....- .+..++++|..+.-.-+ ... + +.+.=++++. .+.++
T Consensus 91 ~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL-~~p~~~~~lD~~rPVavll~~vLh~v~D~~d 168 (267)
T PF04672_consen 91 RVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAIL-AHPEVRGLLDFDRPVAVLLVAVLHFVPDDDD 168 (267)
T ss_dssp HH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHH-CSHHHHCC--TTS--EEEECT-GGGS-CGCT
T ss_pred hhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHh-cCHHHHhcCCCCCCeeeeeeeeeccCCCccC
Confidence 776689999999999999999998875432 24899999997632221 100 0 2233333332 12456
Q ss_pred hHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645 208 YQEYFELLLQLIRVGGIIVIDNVLWH 233 (279)
Q Consensus 208 ~~~~l~~~~~~Lk~gG~lv~dd~~~~ 233 (279)
....+..+...|.||.+|++......
T Consensus 169 p~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 169 PAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp HHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred HHHHHHHHHHhCCCCceEEEEecCCC
Confidence 77899999999999999999776543
No 252
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.63 E-value=0.00082 Score=59.23 Aligned_cols=85 Identities=26% Similarity=0.262 Sum_probs=71.0
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
..+....+|.--|.|+.+..+++.+++.++++++|.++.+++.|++.+...+ ++++++++++.+....+...+ .+++
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~~-i~~v 97 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKELG-IGKV 97 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhcC-CCce
Confidence 3455799999999999999999999878899999999999999999988644 689999999877655543333 5789
Q ss_pred EEEEEeCC
Q 023645 197 DFAFVDAE 204 (279)
Q Consensus 197 DlI~id~~ 204 (279)
|-|+.|-+
T Consensus 98 DGiL~DLG 105 (314)
T COG0275 98 DGILLDLG 105 (314)
T ss_pred eEEEEecc
Confidence 99998854
No 253
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.61 E-value=0.00014 Score=65.39 Aligned_cols=100 Identities=14% Similarity=0.056 Sum_probs=68.8
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
.+++++|||||++|.+|..+++. +++|++||..+-. ..+. -..+|+...+|.....+. .+.+|
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~l~-----~~L~---~~~~V~h~~~d~fr~~p~------~~~vD 272 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGPMA-----QSLM---DTGQVEHLRADGFKFRPP------RKNVD 272 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechhcC-----Hhhh---CCCCEEEEeccCcccCCC------CCCCC
Confidence 46789999999999999999986 5699999966522 1122 235699999998766542 36899
Q ss_pred EEEEeCCccchHHHHHHHHccCCCC-cEEEEeCCCCCCc
Q 023645 198 FAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNVLWHGK 235 (279)
Q Consensus 198 lI~id~~~~~~~~~l~~~~~~Lk~g-G~lv~dd~~~~g~ 235 (279)
++++|... .+....+.+.++|..| ..-.+=|+-.+++
T Consensus 273 wvVcDmve-~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk 310 (357)
T PRK11760 273 WLVCDMVE-KPARVAELMAQWLVNGWCREAIFNLKLPMK 310 (357)
T ss_pred EEEEeccc-CHHHHHHHHHHHHhcCcccEEEEEEEcCCC
Confidence 99999752 2335566667777776 2223334445443
No 254
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00079 Score=60.82 Aligned_cols=102 Identities=16% Similarity=0.218 Sum_probs=83.0
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI 199 (279)
+.+|+|-=+|+|.=++.++...+ ..+++.-|++|++++.+++|++.+...+ ..++..|+...+... ...||+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~~~-----~~~fd~I 125 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNSGED-AEVINKDANALLHEL-----HRAFDVI 125 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcCccc-ceeecchHHHHHHhc-----CCCccEE
Confidence 78999999999999999998876 3389999999999999999999874433 555558887666543 4789988
Q ss_pred EEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645 200 FVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229 (279)
Q Consensus 200 ~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd 229 (279)
=+|+ ......|++.+.+.++.||++.+..
T Consensus 126 DiDP-FGSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 126 DIDP-FGSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred ecCC-CCCCchHHHHHHHHhhcCCEEEEEe
Confidence 7765 3445688999999999999999854
No 255
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.58 E-value=0.00057 Score=59.92 Aligned_cols=105 Identities=17% Similarity=0.153 Sum_probs=71.6
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCC------------------------------
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV------------------------------ 169 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~------------------------------ 169 (279)
..+||--|||.|..+..+|.. +..+.|.|.|--|+-..+-.+.....
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 468999999999999999986 57999999999886444333221100
Q ss_pred ---------CCcEEEEEcChhhHHHHHHhCCCCCcEEEEE----EeCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645 170 ---------SHKVKIKHGLAADSLKALILNGEASSYDFAF----VDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 231 (279)
Q Consensus 170 ---------~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~----id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~ 231 (279)
..++.+..||+.+....- ...++||.|+ +|. .++..+|++.+.++|||||+-|=-..+
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~---~~~~~~d~VvT~FFIDT-A~Ni~~Yi~tI~~lLkpgG~WIN~GPL 204 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPD---ENKGSFDVVVTCFFIDT-AENIIEYIETIEHLLKPGGYWINFGPL 204 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCc---ccCCcccEEEEEEEeec-hHHHHHHHHHHHHHhccCCEEEecCCc
Confidence 123555666665543210 0136899884 443 566789999999999999976644433
No 256
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.55 E-value=0.00042 Score=61.82 Aligned_cols=86 Identities=22% Similarity=0.179 Sum_probs=62.0
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
..++..++|.-.|.|+.|..+++.+++ ++++|+|.++++++.|++.+.. ..+++.++++++.+....+.......++
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~--~~~r~~~~~~~F~~l~~~l~~~~~~~~~ 94 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKK--FDDRFIFIHGNFSNLDEYLKELNGINKV 94 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCC--CCTTEEEEES-GGGHHHHHHHTTTTS-E
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhh--ccceEEEEeccHHHHHHHHHHccCCCcc
Confidence 456679999999999999999999984 9999999999999999887764 3678999999997765555433125689
Q ss_pred EEEEEeCCc
Q 023645 197 DFAFVDAEK 205 (279)
Q Consensus 197 DlI~id~~~ 205 (279)
|.|++|-+.
T Consensus 95 dgiL~DLGv 103 (310)
T PF01795_consen 95 DGILFDLGV 103 (310)
T ss_dssp EEEEEE-S-
T ss_pred CEEEEcccc
Confidence 999999663
No 257
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.54 E-value=0.00014 Score=66.56 Aligned_cols=107 Identities=14% Similarity=0.198 Sum_probs=84.0
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
..++..++++|||.|.....++..- .+.+++++.++..+..+.......++.++..++.+|+..... ++..|
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~f------edn~f 179 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPF------EDNTF 179 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCC------Ccccc
Confidence 3455689999999999999998753 579999999999998888888888887777777666654322 36889
Q ss_pred EEEEE-eCC--ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645 197 DFAFV-DAE--KRMYQEYFELLLQLIRVGGIIVIDNVL 231 (279)
Q Consensus 197 DlI~i-d~~--~~~~~~~l~~~~~~Lk~gG~lv~dd~~ 231 (279)
|.+.. +.. .......++++++.++|||+.+.-...
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence 99854 433 556778899999999999999985544
No 258
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.51 E-value=0.0028 Score=60.58 Aligned_cols=136 Identities=18% Similarity=0.245 Sum_probs=99.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCC---CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEE
Q 023645 99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE---SGCLVACERDARSLEVAKKYYERAGVSHKVKI 175 (279)
Q Consensus 99 ~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~---~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~ 175 (279)
+..-++....+++..++...+..+|.|-.||+|.......+.+.. ...++|.|+++.....++-++--+|....+..
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence 456678888888888888766679999999999988887777642 26799999999999999999988888644667
Q ss_pred EEcChhhHHHHHHhCCCCCcEEEEEEeCCc----------------------------cchHHHHHHHHccCCCCc---E
Q 023645 176 KHGLAADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLLQLIRVGG---I 224 (279)
Q Consensus 176 ~~gd~~~~l~~~~~~~~~~~fDlI~id~~~----------------------------~~~~~~l~~~~~~Lk~gG---~ 224 (279)
.++|........ .+.+.+.||+|+.+++. .....+++.+...|+||| +
T Consensus 246 ~~~dtl~~~~~~-~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aai 324 (489)
T COG0286 246 RHGDTLSNPKHD-DKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI 324 (489)
T ss_pred cccccccCCccc-ccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEE
Confidence 777765443221 01124779998865431 112567888889999865 5
Q ss_pred EEEeCCCCCCc
Q 023645 225 IVIDNVLWHGK 235 (279)
Q Consensus 225 lv~dd~~~~g~ 235 (279)
++.+++++.|.
T Consensus 325 vl~~gvlfr~~ 335 (489)
T COG0286 325 VLPDGVLFRGG 335 (489)
T ss_pred EecCCcCcCCC
Confidence 66677777765
No 259
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.00058 Score=54.71 Aligned_cols=107 Identities=17% Similarity=0.209 Sum_probs=69.5
Q ss_pred cCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCC--cEEEEEcChhhHHHHHHhCCCCC
Q 023645 118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH--KVKIKHGLAADSLKALILNGEAS 194 (279)
Q Consensus 118 ~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~--~v~~~~gd~~~~l~~~~~~~~~~ 194 (279)
..+++|||+|.| +|..++++|...+ ...|...|-+++.++..++....+-... ++.+..-+... ... +.+..
T Consensus 28 ~rg~~ilelgggft~laglmia~~a~-~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~--aqs--q~eq~ 102 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKAP-DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWG--AQS--QQEQH 102 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeecC-CceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhh--hHH--HHhhC
Confidence 345789999988 5667788887766 6789999999999998888766432111 12111111110 111 11246
Q ss_pred cEEEEEEe-CC--ccchHHHHHHHHccCCCCcEEEEeC
Q 023645 195 SYDFAFVD-AE--KRMYQEYFELLLQLIRVGGIIVIDN 229 (279)
Q Consensus 195 ~fDlI~id-~~--~~~~~~~l~~~~~~Lk~gG~lv~dd 229 (279)
+||+|++. .. .+......+.+..+|+|.|.-++-.
T Consensus 103 tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fs 140 (201)
T KOG3201|consen 103 TFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFS 140 (201)
T ss_pred cccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEec
Confidence 89999864 32 4556677888899999999855533
No 260
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.48 E-value=0.00034 Score=60.18 Aligned_cols=96 Identities=11% Similarity=0.077 Sum_probs=69.0
Q ss_pred HHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHH
Q 023645 108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL 187 (279)
Q Consensus 108 ~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~ 187 (279)
..++..+-.......|-|+|||-+.++. .. .-.|+++|+.+ .. -+++.+|.... |-
T Consensus 169 d~ii~~ik~r~~~~vIaD~GCGEakiA~----~~--~~kV~SfDL~a--------------~~--~~V~~cDm~~v-Pl- 224 (325)
T KOG3045|consen 169 DVIIRKIKRRPKNIVIADFGCGEAKIAS----SE--RHKVHSFDLVA--------------VN--ERVIACDMRNV-PL- 224 (325)
T ss_pred HHHHHHHHhCcCceEEEecccchhhhhh----cc--ccceeeeeeec--------------CC--CceeeccccCC-cC-
Confidence 4455666555566789999999987654 22 35799999865 22 35666777653 21
Q ss_pred HhCCCCCcEEEEEEeCC--ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645 188 ILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVL 231 (279)
Q Consensus 188 ~~~~~~~~fDlI~id~~--~~~~~~~l~~~~~~Lk~gG~lv~dd~~ 231 (279)
++++.|+++..-. -.+...++.++.+.|++||.+.|..|-
T Consensus 225 ----~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 225 ----EDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred ----ccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehh
Confidence 2789999876543 456788999999999999999998774
No 261
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.46 E-value=0.00086 Score=66.53 Aligned_cols=102 Identities=22% Similarity=0.239 Sum_probs=71.0
Q ss_pred CEEEEEcCccCHHHHHHHHHC-------CC----CCEEEEEeCChhH--------------HHHHHHHHHH-----hCC-
Q 023645 121 QRCIEVGVYTGYSSLAIALVL-------PE----SGCLVACERDARS--------------LEVAKKYYER-----AGV- 169 (279)
Q Consensus 121 ~~VLEiG~G~G~~t~~la~~~-------~~----~~~v~~iD~s~~~--------------~~~a~~~~~~-----~g~- 169 (279)
-+|+|+|-|+|...+...+.+ ++ .-+++++|..|-. .+.+++..+. .|+
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 489999999999887776544 21 2489999986522 2222222221 122
Q ss_pred -----CC--cEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC------ccchHHHHHHHHccCCCCcEEEE
Q 023645 170 -----SH--KVKIKHGLAADSLKALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 170 -----~~--~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~------~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
.+ .+++..||+.+.++.+ ...||++|.|+- .-...++|..+.++++|||.++-
T Consensus 139 ~~~~~~~~~~l~l~~gd~~~~~~~~-----~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 139 RLLFDDGRVTLDLWFGDANELLPQL-----DARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred EEEecCCcEEEEEEecCHHHHHHhc-----cccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 11 3567889999988876 467999999963 12356899999999999999985
No 262
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.0013 Score=54.72 Aligned_cols=102 Identities=17% Similarity=0.196 Sum_probs=76.3
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCCCCC
Q 023645 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEAS 194 (279)
Q Consensus 117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~~~~ 194 (279)
+.++.+||=+|..+|...-.++.-.+ .+.++++|.++......-...+ -.+++-.+.+|+..- ...+ -+
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~---~R~Ni~PIL~DA~~P~~Y~~~-----Ve 144 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAE---KRPNIIPILEDARKPEKYRHL-----VE 144 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHH---hCCCceeeecccCCcHHhhhh-----cc
Confidence 45788999999999999999999887 8999999999987654444333 234578888888532 2222 36
Q ss_pred cEEEEEEeCCccchHH-HHHHHHccCCCCcEEEE
Q 023645 195 SYDFAFVDAEKRMYQE-YFELLLQLIRVGGIIVI 227 (279)
Q Consensus 195 ~fDlI~id~~~~~~~~-~l~~~~~~Lk~gG~lv~ 227 (279)
..|+|+.|....+..+ +...+...|++||.+++
T Consensus 145 ~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 145 KVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred cccEEEEecCCchHHHHHHHHHHHhcccCCeEEE
Confidence 7999999988665544 45666889999995554
No 263
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.43 E-value=0.00024 Score=66.21 Aligned_cols=117 Identities=21% Similarity=0.239 Sum_probs=90.1
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC-CCCcEEE
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG-EASSYDF 198 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~-~~~~fDl 198 (279)
+..+|-+|-|.|....++...+| ..++++++++|++++.|++++....-. +..++..|..+.+....... ++..||+
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCcE
Confidence 45788888888999998888887 689999999999999999998754332 56777788888877776542 4678999
Q ss_pred EEEeCCccc------------hHHHHHHHHccCCCCcEEEEeCCCCCCcccC
Q 023645 199 AFVDAEKRM------------YQEYFELLLQLIRVGGIIVIDNVLWHGKVAD 238 (279)
Q Consensus 199 I~id~~~~~------------~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~ 238 (279)
+++|.+-.+ ...++..+...|.|.|+++++-+..+....+
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~ 425 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKD 425 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhH
Confidence 999854111 2345666778999999999988877766543
No 264
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.42 E-value=0.00067 Score=58.42 Aligned_cols=87 Identities=11% Similarity=0.136 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhc-CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHH
Q 023645 107 QAQLLAMLVQIL-GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 185 (279)
Q Consensus 107 ~~~~l~~l~~~~-~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~ 185 (279)
...++..+.... .+.+|+|||||.--.++.+....+ +..++|+|++..+++.....+...+.. .++...|.....+
T Consensus 92 Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~-~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~~ 168 (251)
T PF07091_consen 92 LDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAP-GATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDPP 168 (251)
T ss_dssp HHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSST-T-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSHT
T ss_pred HHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCC-CcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccCC
Confidence 444555555443 478999999999998887775433 679999999999999999999998875 5666667765443
Q ss_pred HHHhCCCCCcEEEEEEeC
Q 023645 186 ALILNGEASSYDFAFVDA 203 (279)
Q Consensus 186 ~~~~~~~~~~fDlI~id~ 203 (279)
....|+.++--
T Consensus 169 -------~~~~DlaLllK 179 (251)
T PF07091_consen 169 -------KEPADLALLLK 179 (251)
T ss_dssp -------TSEESEEEEET
T ss_pred -------CCCcchhhHHH
Confidence 57789988753
No 265
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.36 E-value=0.00012 Score=61.83 Aligned_cols=97 Identities=8% Similarity=0.045 Sum_probs=71.7
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI 199 (279)
-..++||||+.|.....+.... -.+++-+|.|-.|++.++..-. .++ .+....+|- ++++.- +.++|+|
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qd-p~i--~~~~~v~DE-E~Ldf~-----ens~DLi 141 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQD-PSI--ETSYFVGDE-EFLDFK-----ENSVDLI 141 (325)
T ss_pred CcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCC-Cce--EEEEEecch-hccccc-----ccchhhh
Confidence 3479999999999988776542 2589999999999988765321 222 245556664 344422 6899999
Q ss_pred EEe---CCccchHHHHHHHHccCCCCcEEEE
Q 023645 200 FVD---AEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 200 ~id---~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
+.. ++..+.+..+.++...|||+|.++.
T Consensus 142 isSlslHW~NdLPg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 142 ISSLSLHWTNDLPGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred hhhhhhhhhccCchHHHHHHHhcCCCccchh
Confidence 865 4566778889999999999999886
No 266
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.29 E-value=0.00025 Score=60.72 Aligned_cols=86 Identities=20% Similarity=0.260 Sum_probs=53.6
Q ss_pred HHHHHhhcCC--CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh---CC-----CCcEEEEEcCh
Q 023645 111 LAMLVQILGA--QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA---GV-----SHKVKIKHGLA 180 (279)
Q Consensus 111 l~~l~~~~~~--~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~---g~-----~~~v~~~~gd~ 180 (279)
+...+...++ .+|||.-+|.|.-++.++.. +++|+++|.||-.....+.-++.+ .. ..+++++++|+
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~ 141 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA 141 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence 3344444443 38999999999999999864 579999999998877766554432 11 14799999999
Q ss_pred hhHHHHHHhCCCCCcEEEEEEeCC
Q 023645 181 ADSLKALILNGEASSYDFAFVDAE 204 (279)
Q Consensus 181 ~~~l~~~~~~~~~~~fDlI~id~~ 204 (279)
.+++... +.+||+|++|+-
T Consensus 142 ~~~L~~~-----~~s~DVVY~DPM 160 (234)
T PF04445_consen 142 LEYLRQP-----DNSFDVVYFDPM 160 (234)
T ss_dssp CCHCCCH-----SS--SEEEE--S
T ss_pred HHHHhhc-----CCCCCEEEECCC
Confidence 9887622 689999999975
No 267
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.22 E-value=0.00066 Score=56.03 Aligned_cols=113 Identities=9% Similarity=0.050 Sum_probs=68.4
Q ss_pred HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHH------HHHHHHHHHhCCCCcEEEEEcChhhHHHHH
Q 023645 114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSL------EVAKKYYERAGVSHKVKIKHGLAADSLKAL 187 (279)
Q Consensus 114 l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~------~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~ 187 (279)
+....++.+|+|+-.|.|++|..++....+.+.|+++-..+... ...+....+.... +++.+-.+.....+
T Consensus 43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~a-N~e~~~~~~~A~~~-- 119 (238)
T COG4798 43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYA-NVEVIGKPLVALGA-- 119 (238)
T ss_pred EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhh-hhhhhCCcccccCC--
Confidence 34556788999999999999999999998888999876654311 1111111122222 23333333222111
Q ss_pred HhCCCCCcEEEEEEeCC----------ccchHHHHHHHHccCCCCcEEEEeCCC-CCC
Q 023645 188 ILNGEASSYDFAFVDAE----------KRMYQEYFELLLQLIRVGGIIVIDNVL-WHG 234 (279)
Q Consensus 188 ~~~~~~~~fDlI~id~~----------~~~~~~~l~~~~~~Lk~gG~lv~dd~~-~~g 234 (279)
.+..|+++.... ......+...+++.|||||++++.|-. .+|
T Consensus 120 -----pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG 172 (238)
T COG4798 120 -----PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPG 172 (238)
T ss_pred -----CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCC
Confidence 355666654211 223456778889999999998876643 344
No 268
>PHA01634 hypothetical protein
Probab=97.08 E-value=0.0019 Score=49.73 Aligned_cols=75 Identities=21% Similarity=0.216 Sum_probs=55.3
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
...++|+|||.+.|.++++++..- ...|+++|.++...+..+++.+....-++..-. + ++. ++-++||
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~G--AK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~-~---eW~------~~Y~~~D 94 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRG--ASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMK-G---EWN------GEYEDVD 94 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcC--ccEEEEeccCHHHHHHHHHHhhhheeeeceeec-c---ccc------ccCCCcc
Confidence 457899999999999999998763 358999999999999999988765433222221 1 111 1247899
Q ss_pred EEEEeCC
Q 023645 198 FAFVDAE 204 (279)
Q Consensus 198 lI~id~~ 204 (279)
+..+|..
T Consensus 95 i~~iDCe 101 (156)
T PHA01634 95 IFVMDCE 101 (156)
T ss_pred eEEEEcc
Confidence 9999875
No 269
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.00054 Score=63.91 Aligned_cols=115 Identities=23% Similarity=0.226 Sum_probs=92.4
Q ss_pred HHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC
Q 023645 112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG 191 (279)
Q Consensus 112 ~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~ 191 (279)
....+..++-+|||.=|++|.-++..+..++.-.+|++-|.++..++..+++.+.++..+.++..+.|+.-..-.. ..
T Consensus 102 ~~~~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~--~~ 179 (525)
T KOG1253|consen 102 ALLKREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEH--PM 179 (525)
T ss_pred chhhhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhc--cc
Confidence 3444556777999999999999999999998556899999999999999999999999888999999986432221 00
Q ss_pred CCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645 192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229 (279)
Q Consensus 192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd 229 (279)
....||+|=+|+- .....|++.+.+.++.||+|.+.-
T Consensus 180 ~~~~FDvIDLDPy-Gs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 180 VAKFFDVIDLDPY-GSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred cccccceEecCCC-CCccHHHHHHHHHhhcCCEEEEEe
Confidence 1478999988753 334578999999999999999853
No 270
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.96 E-value=0.0017 Score=58.12 Aligned_cols=119 Identities=13% Similarity=0.134 Sum_probs=88.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHH-------HHHHHHHHhCCCC-c
Q 023645 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLE-------VAKKYYERAGVSH-K 172 (279)
Q Consensus 101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~-------~a~~~~~~~g~~~-~ 172 (279)
-.+.++..-+++.++...+++-|.|--.|||+.....+.- ++.|+|.|++-.++. ..+.|+++.|..+ -
T Consensus 190 TSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~f 266 (421)
T KOG2671|consen 190 TSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQF 266 (421)
T ss_pred cccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchh
Confidence 3566777788888888899999999999999988877764 589999999987765 4577899888643 3
Q ss_pred EEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCcc------------------------------------chHHHHHHHH
Q 023645 173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKR------------------------------------MYQEYFELLL 216 (279)
Q Consensus 173 v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~------------------------------------~~~~~l~~~~ 216 (279)
+.+..+|...-.-. ....||.|++|++.. .+...+....
T Consensus 267 ldvl~~D~sn~~~r-----sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss 341 (421)
T KOG2671|consen 267 LDVLTADFSNPPLR-----SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSS 341 (421)
T ss_pred hheeeecccCcchh-----hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhH
Confidence 57777887542111 157899999997510 0123455567
Q ss_pred ccCCCCcEEEE
Q 023645 217 QLIRVGGIIVI 227 (279)
Q Consensus 217 ~~Lk~gG~lv~ 227 (279)
+.|..||.+++
T Consensus 342 ~~L~~ggrlv~ 352 (421)
T KOG2671|consen 342 RRLVDGGRLVF 352 (421)
T ss_pred hhhhcCceEEE
Confidence 99999999997
No 271
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.94 E-value=0.0012 Score=57.54 Aligned_cols=111 Identities=12% Similarity=0.135 Sum_probs=65.9
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCC---------------------------C
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS---------------------------H 171 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~---------------------------~ 171 (279)
++.++||||||.-..- +..+.+.--+|+..|..+...+..++.++..+-- .
T Consensus 56 ~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 4569999999874432 2222221248999999998888777766543210 1
Q ss_pred cE-EEEEcChhhHHHHHHhCCCCCcEEEEEEeC-------CccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645 172 KV-KIKHGLAADSLKALILNGEASSYDFAFVDA-------EKRMYQEYFELLLQLIRVGGIIVIDNVL 231 (279)
Q Consensus 172 ~v-~~~~gd~~~~l~~~~~~~~~~~fDlI~id~-------~~~~~~~~l~~~~~~Lk~gG~lv~dd~~ 231 (279)
.| .++.+|.....+-.....-..+||+|+.-. ..+.|...++.+.++|||||.|++-.++
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 13 356666654221100000023599998643 3667888899999999999999997765
No 272
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.89 E-value=0.0073 Score=54.62 Aligned_cols=99 Identities=21% Similarity=0.235 Sum_probs=69.5
Q ss_pred HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645 115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (279)
Q Consensus 115 ~~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~ 193 (279)
....++++|+-+|+| .|..+..+|+++. ++|+++|.+++..+.|++.-. -.++...-.+..+.. .
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGA-------d~~i~~~~~~~~~~~-----~ 227 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGA-------DHVINSSDSDALEAV-----K 227 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCC-------cEEEEcCCchhhHHh-----H
Confidence 345678899888887 4557778888774 899999999999888877432 133332222334443 2
Q ss_pred CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645 194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 231 (279)
Q Consensus 194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~ 231 (279)
+.||+|+.-.. ...++...+.|++||.+++-...
T Consensus 228 ~~~d~ii~tv~----~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 228 EIADAIIDTVG----PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hhCcEEEECCC----hhhHHHHHHHHhcCCEEEEECCC
Confidence 45999987665 35577888999999999985554
No 273
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.81 E-value=0.0068 Score=54.90 Aligned_cols=118 Identities=16% Similarity=0.213 Sum_probs=78.9
Q ss_pred HhhcCCCEEEEEcCccCHHHHHHHHHCC---CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHH-hC
Q 023645 115 VQILGAQRCIEVGVYTGYSSLAIALVLP---ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI-LN 190 (279)
Q Consensus 115 ~~~~~~~~VLEiG~G~G~~t~~la~~~~---~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~-~~ 190 (279)
+...++.+|||+.+..|.-|+.+.+.+- ..+.|++=|.++..+...........-. .+.+...++........ ..
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~-~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSP-NLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCc-ceeeecccceeccccccccC
Confidence 4566888999999999999999888763 2358999999999888877776544332 24444444432211100 11
Q ss_pred C--CCCcEEEEEEeCCc--------------c------------chHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645 191 G--EASSYDFAFVDAEK--------------R------------MYQEYFELLLQLIRVGGIIVIDNVLWH 233 (279)
Q Consensus 191 ~--~~~~fDlI~id~~~--------------~------------~~~~~l~~~~~~Lk~gG~lv~dd~~~~ 233 (279)
+ +...||-|++|.+. . -....+...+++||+||.+|...+-.+
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 1 23689999998541 0 023456666799999999999876544
No 274
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.73 E-value=0.0032 Score=58.05 Aligned_cols=58 Identities=21% Similarity=0.333 Sum_probs=51.5
Q ss_pred EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (279)
Q Consensus 122 ~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~ 181 (279)
.|||||+|||..+++.+++.. -.||++|.-..|.+.|++...++|++++|+++.....
T Consensus 69 ~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSt 126 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRST 126 (636)
T ss_pred EEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHHHhcCCCccceeeeccccc
Confidence 689999999999999888764 4699999999999999999999999999988765554
No 275
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.71 E-value=0.0051 Score=52.53 Aligned_cols=105 Identities=17% Similarity=0.142 Sum_probs=73.2
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
+.++.+||=+|+++|.+.-..+.-..+.+-|+++|.++..-...-... ....+|..+..|+...-.... .-+-.
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmA---kkRtNiiPIiEDArhP~KYRm---lVgmV 227 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMA---KKRTNIIPIIEDARHPAKYRM---LVGMV 227 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHh---hccCCceeeeccCCCchheee---eeeeE
Confidence 457889999999999999999998888899999999986543322222 223346667777754221100 02578
Q ss_pred EEEEEeCCccchHHHH-HHHHccCCCCcEEEE
Q 023645 197 DFAFVDAEKRMYQEYF-ELLLQLIRVGGIIVI 227 (279)
Q Consensus 197 DlI~id~~~~~~~~~l-~~~~~~Lk~gG~lv~ 227 (279)
|+||.|....+....+ -.+...||+||-+++
T Consensus 228 DvIFaDvaqpdq~RivaLNA~~FLk~gGhfvi 259 (317)
T KOG1596|consen 228 DVIFADVAQPDQARIVALNAQYFLKNGGHFVI 259 (317)
T ss_pred EEEeccCCCchhhhhhhhhhhhhhccCCeEEE
Confidence 9999998766654433 345678999998876
No 276
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.67 E-value=0.015 Score=51.90 Aligned_cols=119 Identities=20% Similarity=0.259 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHHH---------hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCc
Q 023645 103 VSPDQAQLLAMLV---------QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK 172 (279)
Q Consensus 103 ~~~~~~~~l~~l~---------~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~ 172 (279)
++-+.+.++..|. ....+.+||-+|+| .|..+...|++++ ..+|+.+|+++..++.|++ + |...-
T Consensus 144 vs~eeGAl~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~-~---Ga~~~ 218 (354)
T KOG0024|consen 144 VSFEEGALIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK-F---GATVT 218 (354)
T ss_pred CchhhcccccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH-h---CCeEE
Confidence 4455555555443 34567899999999 4888888899987 6799999999999999998 4 33321
Q ss_pred EEEEEcChhhHHHHHHhCC-CCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645 173 VKIKHGLAADSLKALILNG-EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229 (279)
Q Consensus 173 v~~~~gd~~~~l~~~~~~~-~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd 229 (279)
...-+.+..+.+....++. +...+|+.|--... ..-++.+...++.||.+++-.
T Consensus 219 ~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~---~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 219 DPSSHKSSPQELAELVEKALGKKQPDVTFDCSGA---EVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred eeccccccHHHHHHHHHhhccccCCCeEEEccCc---hHHHHHHHHHhccCCEEEEec
Confidence 1122222223333333332 23568998854433 345667788899999987743
No 277
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.63 E-value=0.002 Score=57.86 Aligned_cols=106 Identities=23% Similarity=0.269 Sum_probs=65.7
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
..+++|||+|.|.|.....+-..+|.-..++-++.|+..-++.....+..... .......|+....-.+ +..+.|+
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~-~td~r~s~vt~dRl~l---p~ad~yt 187 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTE-KTDWRASDVTEDRLSL---PAADLYT 187 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccc-cCCCCCCccchhccCC---Cccceee
Confidence 46789999999999776666666774457888888886655544433322221 2223333333221111 1146788
Q ss_pred EEEEeC------CccchHHHHHHHHccCCCCcEEEE
Q 023645 198 FAFVDA------EKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 198 lI~id~------~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
++++-. .......+++.++.++.|||.||+
T Consensus 188 l~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVi 223 (484)
T COG5459 188 LAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVI 223 (484)
T ss_pred hhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEE
Confidence 877532 222344589999999999999998
No 278
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.58 E-value=0.01 Score=50.36 Aligned_cols=97 Identities=19% Similarity=0.226 Sum_probs=66.4
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCC----CC----EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh--HHHHHHh
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLPE----SG----CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD--SLKALIL 189 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~~----~~----~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~--~l~~~~~ 189 (279)
-++++|+....|.|+..+++.+-. .+ .|++||+.+-+ ... .|.-+++|... .+..++.
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~-GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIE-GVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccC-ceEEeecccCCHhHHHHHHH
Confidence 468999999999999999987632 21 39999997632 232 36677788753 3344443
Q ss_pred CCCCCcEEEEEEeCC-----ccchHH---------HHHHHHccCCCCcEEEEe
Q 023645 190 NGEASSYDFAFVDAE-----KRMYQE---------YFELLLQLIRVGGIIVID 228 (279)
Q Consensus 190 ~~~~~~fDlI~id~~-----~~~~~~---------~l~~~~~~Lk~gG~lv~d 228 (279)
..+.++-|+|++|+. .++..+ .|......|+|||.+|..
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 334579999999975 233333 344445889999999874
No 279
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.47 E-value=0.031 Score=51.18 Aligned_cols=103 Identities=20% Similarity=0.235 Sum_probs=69.8
Q ss_pred CCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc-ChhhHHHHHHhCCCCCcE
Q 023645 119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGEASSY 196 (279)
Q Consensus 119 ~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~~~~~~~~~~f 196 (279)
.+.+|+-+|||. |..+..+++..+ ..+|+.+|.+++.++.|++.... +.+..... +........ .....+
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~---t~g~g~ 239 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILEL---TGGRGA 239 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHH---hCCCCC
Confidence 344899999985 777777888776 57999999999999999885531 11111111 222222121 112379
Q ss_pred EEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLW 232 (279)
Q Consensus 197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~ 232 (279)
|++|--.. ....++.+...++|||.+++-.+.-
T Consensus 240 D~vie~~G---~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 240 DVVIEAVG---SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred CEEEECCC---CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 99997655 4457889999999999999866543
No 280
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.46 E-value=0.01 Score=55.99 Aligned_cols=118 Identities=13% Similarity=0.096 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHhhcC------CCEEEEEcCccCHHHHHHHHH---CCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEE
Q 023645 104 SPDQAQLLAMLVQILG------AQRCIEVGVYTGYSSLAIALV---LPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174 (279)
Q Consensus 104 ~~~~~~~l~~l~~~~~------~~~VLEiG~G~G~~t~~la~~---~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~ 174 (279)
...+..++..|.+..+ ...|+-+|.|.|-..-...++ ..+..+++++|.+|.++...+. .+.....++|+
T Consensus 346 ~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vt 424 (649)
T KOG0822|consen 346 DQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVT 424 (649)
T ss_pred HHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeE
Confidence 3444555555555421 346788999999877665443 3345789999999999876654 44446778999
Q ss_pred EEEcChhhHHHHHHhCCCCCcEEEEEEe-----CCccchHHHHHHHHccCCCCcEEEEe
Q 023645 175 IKHGLAADSLKALILNGEASSYDFAFVD-----AEKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 175 ~~~gd~~~~l~~~~~~~~~~~fDlI~id-----~~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
++.+|..++.+. ..+.|+++.. ++-+--++.+.-+.+.|||.|+.|=.
T Consensus 425 ii~~DMR~w~ap------~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 425 IISSDMRKWNAP------REQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred EEeccccccCCc------hhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 999999876532 2678988642 33455678899999999999887643
No 281
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.027 Score=44.64 Aligned_cols=113 Identities=13% Similarity=0.073 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHH
Q 023645 105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 184 (279)
Q Consensus 105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l 184 (279)
.++-+-+..++...+..+.+|+|+|-|...+..++..- -.-+|+|++|-.+..++-..-++|+..+..|...|....
T Consensus 58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~--~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~- 134 (199)
T KOG4058|consen 58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGL--RPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV- 134 (199)
T ss_pred HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCC--CcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc-
Confidence 34434444455555667999999999999998887531 367999999999999988888889988888887776543
Q ss_pred HHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 185 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 185 ~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
+ -..|..+.+-+........-.++..-+..+..++.
T Consensus 135 -d------l~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vva 170 (199)
T KOG4058|consen 135 -D------LRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVA 170 (199)
T ss_pred -c------ccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEE
Confidence 1 23444444444433344444455556777777665
No 282
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.099 Score=45.06 Aligned_cols=112 Identities=17% Similarity=0.128 Sum_probs=79.5
Q ss_pred HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCC---CEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHh
Q 023645 113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPES---GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 189 (279)
Q Consensus 113 ~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~---~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~ 189 (279)
.++.+..+...+|+|+|+-.-+..+..++... .+++.||++...++...+.+...-..-.+.-+++|....+..+..
T Consensus 72 Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~ 151 (321)
T COG4301 72 EIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPR 151 (321)
T ss_pred HHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccC
Confidence 34556778899999999999999998887532 589999999998876555554433333477788888776665531
Q ss_pred CCCCCcEEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEE
Q 023645 190 NGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 190 ~~~~~~fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
.+.==++|+... +.....++..+...|+||-++++
T Consensus 152 ---~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 152 ---GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred ---CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence 122234454432 55567899999999999988776
No 283
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.19 E-value=0.016 Score=48.93 Aligned_cols=80 Identities=13% Similarity=0.143 Sum_probs=54.3
Q ss_pred CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH-HHHHHhCCCCCcEEEE
Q 023645 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS-LKALILNGEASSYDFA 199 (279)
Q Consensus 121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~-l~~~~~~~~~~~fDlI 199 (279)
.++|||||-+......-.. --.|+.||+++.. -.+.++|+.+. +|. .+.++||+|
T Consensus 53 lrlLEVGals~~N~~s~~~----~fdvt~IDLns~~----------------~~I~qqDFm~rplp~----~~~e~FdvI 108 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSG----WFDVTRIDLNSQH----------------PGILQQDFMERPLPK----NESEKFDVI 108 (219)
T ss_pred ceEEeecccCCCCcccccC----ceeeEEeecCCCC----------------CCceeeccccCCCCC----CcccceeEE
Confidence 5999999986654433222 2369999998732 24556666653 221 125799999
Q ss_pred EEeC------CccchHHHHHHHHccCCCCcE
Q 023645 200 FVDA------EKRMYQEYFELLLQLIRVGGI 224 (279)
Q Consensus 200 ~id~------~~~~~~~~l~~~~~~Lk~gG~ 224 (279)
.+.- .....-+.+..+.++|+|+|.
T Consensus 109 s~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 109 SLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred EEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 7542 355566889999999999999
No 284
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.09 E-value=0.00097 Score=55.61 Aligned_cols=114 Identities=16% Similarity=0.094 Sum_probs=72.3
Q ss_pred CCCCCCHHHHHHHHHHH-h--hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEE
Q 023645 99 SQMQVSPDQAQLLAMLV-Q--ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI 175 (279)
Q Consensus 99 ~~~~~~~~~~~~l~~l~-~--~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~ 175 (279)
+....++++-+-+..+- . ...+.++||+|+|.|-.+..++..+. +|++.|.|..|....++ .+. .+
T Consensus 89 sMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~k----k~y----nV 157 (288)
T KOG3987|consen 89 SMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKK----KNY----NV 157 (288)
T ss_pred ceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhh----cCC----ce
Confidence 33455666643333222 1 23467999999999999999987664 68999999888655443 222 11
Q ss_pred EEcChhhHHHHHHhCCCCCcEEEEEEeCC---ccchHHHHHHHHccCCC-CcEEEEeCCC
Q 023645 176 KHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRV-GGIIVIDNVL 231 (279)
Q Consensus 176 ~~gd~~~~l~~~~~~~~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~-gG~lv~dd~~ 231 (279)
+ ...+.+.. +-+||+|.+-.- .-+.-..++.++..|+| +|.+|+.=++
T Consensus 158 l--~~~ew~~t------~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVL 209 (288)
T KOG3987|consen 158 L--TEIEWLQT------DVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVL 209 (288)
T ss_pred e--eehhhhhc------CceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEe
Confidence 1 11233221 457999876432 33455788899999999 7887775444
No 285
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.07 E-value=0.11 Score=43.91 Aligned_cols=107 Identities=16% Similarity=0.167 Sum_probs=64.1
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCC-CEEEEEeCChhHHHHHHHHHHHh---CC-------------------------
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPES-GCLVACERDARSLEVAKKYYERA---GV------------------------- 169 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~~-~~v~~iD~s~~~~~~a~~~~~~~---g~------------------------- 169 (279)
.+-++.|-.||.|+....+.-..++. .+|++-|+++++++.|++|+... |+
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 45699999999999877766543322 48999999999999998875421 11
Q ss_pred -------------CCcEEEEEcChhhHH--HHHHhCCCCCcEEEEEEeCCc------------cchHHHHHHHHccCCCC
Q 023645 170 -------------SHKVKIKHGLAADSL--KALILNGEASSYDFAFVDAEK------------RMYQEYFELLLQLIRVG 222 (279)
Q Consensus 170 -------------~~~v~~~~gd~~~~l--~~~~~~~~~~~fDlI~id~~~------------~~~~~~l~~~~~~Lk~g 222 (279)
.....+.+.|+++.- ... .. ....|+|+.|-+. .....+|+.+.+.|.++
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~-~~--~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~ 207 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVL-DA--GFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPER 207 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHH-HT--T---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhh-cc--CCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCC
Confidence 123567777776632 122 11 2446999998541 12567899999999777
Q ss_pred cEEEEe
Q 023645 223 GIIVID 228 (279)
Q Consensus 223 G~lv~d 228 (279)
+++++.
T Consensus 208 sVV~v~ 213 (246)
T PF11599_consen 208 SVVAVS 213 (246)
T ss_dssp -EEEEE
T ss_pred cEEEEe
Confidence 888873
No 286
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.79 E-value=0.084 Score=48.75 Aligned_cols=108 Identities=18% Similarity=0.214 Sum_probs=68.7
Q ss_pred HHhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC-hhhHHHHHHhCC
Q 023645 114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL-AADSLKALILNG 191 (279)
Q Consensus 114 l~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd-~~~~l~~~~~~~ 191 (279)
+....++.+||.+|+|. |..+..+++..+ ..++++++.+++..+.+++.. +. ..+.....+ ..+.+..+.
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~--- 250 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELT--- 250 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHc---
Confidence 34455678999999987 888888888875 246999999999888877743 22 112222221 222222221
Q ss_pred CCCcEEEEEEeCCc------------------cchHHHHHHHHccCCCCcEEEEeC
Q 023645 192 EASSYDFAFVDAEK------------------RMYQEYFELLLQLIRVGGIIVIDN 229 (279)
Q Consensus 192 ~~~~fDlI~id~~~------------------~~~~~~l~~~~~~Lk~gG~lv~dd 229 (279)
....+|+||-.... .+....++.+.+.|+++|.++.-.
T Consensus 251 ~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 251 GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 12468988753321 112456788899999999988754
No 287
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.76 E-value=0.044 Score=48.40 Aligned_cols=95 Identities=16% Similarity=0.084 Sum_probs=63.1
Q ss_pred EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEE
Q 023645 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201 (279)
Q Consensus 122 ~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~i 201 (279)
+|+|+.||.|..+..+..+. -..+.++|+++.+.+..+.++.. .++++|..+...... ...+|+++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~----~~~~D~l~~ 68 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDF----IPDIDLLTG 68 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhc----CCCCCEEEe
Confidence 69999999999988887652 23678999999999888877642 155677765433210 256999987
Q ss_pred eCCc------------cc-----hHHHHHHHHccCCCCcEEEEeCCC
Q 023645 202 DAEK------------RM-----YQEYFELLLQLIRVGGIIVIDNVL 231 (279)
Q Consensus 202 d~~~------------~~-----~~~~l~~~~~~Lk~gG~lv~dd~~ 231 (279)
+.+. .+ ...++ .+.+.++|. ++++.||.
T Consensus 69 gpPCq~fS~ag~~~~~~d~r~~L~~~~~-~~i~~~~P~-~~v~ENV~ 113 (275)
T cd00315 69 GFPCQPFSIAGKRKGFEDTRGTLFFEII-RILKEKKPK-YFLLENVK 113 (275)
T ss_pred CCCChhhhHHhhcCCCCCchHHHHHHHH-HHHHhcCCC-EEEEEcCc
Confidence 6531 11 12233 334556775 88888884
No 288
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=95.68 E-value=0.04 Score=42.31 Aligned_cols=92 Identities=21% Similarity=0.318 Sum_probs=61.7
Q ss_pred ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccch
Q 023645 129 YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMY 208 (279)
Q Consensus 129 G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~ 208 (279)
|.|..+..+++..+ ++|+++|.+++..+.+++ .|...-+.....|..+.+..+. ....+|+||-....
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~----~Ga~~~~~~~~~~~~~~i~~~~---~~~~~d~vid~~g~--- 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKE----LGADHVIDYSDDDFVEQIRELT---GGRGVDVVIDCVGS--- 68 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHH----TTESEEEETTTSSHHHHHHHHT---TTSSEEEEEESSSS---
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHh----hccccccccccccccccccccc---ccccceEEEEecCc---
Confidence 45888999999875 899999999988777765 3422111112222333443331 12479999866552
Q ss_pred HHHHHHHHccCCCCcEEEEeCCCC
Q 023645 209 QEYFELLLQLIRVGGIIVIDNVLW 232 (279)
Q Consensus 209 ~~~l~~~~~~Lk~gG~lv~dd~~~ 232 (279)
...++....+|+++|.+++-...-
T Consensus 69 ~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHHHhccCCEEEEEEccC
Confidence 357888999999999999865543
No 289
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.66 E-value=0.033 Score=52.55 Aligned_cols=130 Identities=13% Similarity=0.142 Sum_probs=75.3
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl 198 (279)
.-++|+|..+|.|.++..|.+. .|+.+-..|..-.-.-..+-.-|+-. +..|..+.++.. ..+||+
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~-----~VWVMNVVP~~~~ntL~vIydRGLIG----~yhDWCE~fsTY-----PRTYDL 430 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDD-----PVWVMNVVPVSGPNTLPVIYDRGLIG----VYHDWCEAFSTY-----PRTYDL 430 (506)
T ss_pred ceeeeeeecccccHHHHHhccC-----CceEEEecccCCCCcchhhhhcccch----hccchhhccCCC-----Ccchhh
Confidence 3468999999999999888753 24333333321111111122223321 111333322222 578999
Q ss_pred EEEeCC------ccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEEeecC--
Q 023645 199 AFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIG-- 270 (279)
Q Consensus 199 I~id~~------~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~-- 270 (279)
|-.++- .-.....+-++-+.|||||.+++.|-. .+-+-.+.+...=++++.+.-..
T Consensus 431 lHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~----------------~vl~~v~~i~~~lrW~~~~~d~e~g 494 (506)
T PF03141_consen 431 LHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV----------------DVLEKVKKIAKSLRWEVRIHDTEDG 494 (506)
T ss_pred eehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH----------------HHHHHHHHHHHhCcceEEEEecCCC
Confidence 977653 233556777788999999999996542 12223444556666777666553
Q ss_pred ----CceEEEEE
Q 023645 271 ----DGMTICQK 278 (279)
Q Consensus 271 ----~G~~i~~~ 278 (279)
..+++|+|
T Consensus 495 ~~~~EkiL~~~K 506 (506)
T PF03141_consen 495 PDGPEKILICQK 506 (506)
T ss_pred CCCCceEEEEEC
Confidence 46888876
No 290
>PRK13699 putative methylase; Provisional
Probab=95.49 E-value=0.023 Score=48.79 Aligned_cols=51 Identities=14% Similarity=0.226 Sum_probs=40.1
Q ss_pred EEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCcc------------------chHHHHHHHHccCCCCcEEEE
Q 023645 173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKR------------------MYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 173 v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~------------------~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
+++++||+.+.+..+. ++++|+||.|++.. .....+.++.++|||||.+++
T Consensus 2 ~~l~~gD~le~l~~lp----d~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFP----DNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCC----ccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3688999999888774 68999999997631 124567888899999998875
No 291
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=95.43 E-value=0.01 Score=52.34 Aligned_cols=103 Identities=16% Similarity=0.208 Sum_probs=70.2
Q ss_pred CCCEEEEEcCccCHHHH-HHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 119 GAQRCIEVGVYTGYSSL-AIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~-~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
.+..|+|+-+|-||+|+ .+..+ + ...|+++|.+|..++..+++++.+++.++..++.||-...-+ ....|
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a-g-Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~-------~~~Ad 264 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA-G-AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP-------RLRAD 264 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc-C-ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc-------cccch
Confidence 34789999999999999 55544 2 368999999999999999999998888777777777643211 35667
Q ss_pred EEEEeCCccchHHHHHHHHccCCCC-c-EEEEeCCC
Q 023645 198 FAFVDAEKRMYQEYFELLLQLIRVG-G-IIVIDNVL 231 (279)
Q Consensus 198 lI~id~~~~~~~~~l~~~~~~Lk~g-G-~lv~dd~~ 231 (279)
-|.+.--+..- +-.-.+.+.|||. | ++=++..+
T Consensus 265 rVnLGLlPSse-~~W~~A~k~Lk~eggsilHIHenV 299 (351)
T KOG1227|consen 265 RVNLGLLPSSE-QGWPTAIKALKPEGGSILHIHENV 299 (351)
T ss_pred heeeccccccc-cchHHHHHHhhhcCCcEEEEeccc
Confidence 77665322211 1223345666664 4 56555443
No 292
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.40 E-value=0.076 Score=45.30 Aligned_cols=89 Identities=17% Similarity=0.191 Sum_probs=58.6
Q ss_pred CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh-CCCCcEEEEEcChh-hHHHHHHhCCCCCcEEE
Q 023645 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKHGLAA-DSLKALILNGEASSYDF 198 (279)
Q Consensus 121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-g~~~~v~~~~gd~~-~~l~~~~~~~~~~~fDl 198 (279)
.++||||+|.-.+=-.+.... -+-+.+|.|+++..++.|+.++..+ +++..++++...-. ..++.+.. ..+.||+
T Consensus 80 i~~LDIGvGAnCIYPliG~~e-YgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig--~nE~yd~ 156 (292)
T COG3129 80 IRILDIGVGANCIYPLIGVHE-YGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIG--KNERYDA 156 (292)
T ss_pred eEEEeeccCccccccccccee-ecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccc--ccceeee
Confidence 478999987543222121111 1458999999999999999999887 77777877654332 23333321 1578999
Q ss_pred EEEeCCccchHHHH
Q 023645 199 AFVDAEKRMYQEYF 212 (279)
Q Consensus 199 I~id~~~~~~~~~l 212 (279)
+.|+++.+...+..
T Consensus 157 tlCNPPFh~s~~da 170 (292)
T COG3129 157 TLCNPPFHDSAADA 170 (292)
T ss_pred EecCCCcchhHHHH
Confidence 99998865544433
No 293
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=95.38 E-value=0.18 Score=39.96 Aligned_cols=101 Identities=17% Similarity=0.216 Sum_probs=54.4
Q ss_pred CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (279)
Q Consensus 121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~ 200 (279)
.-|||+|-|.|..=-.+-+.+| +-+|+.+|-.-...... ....-.++.||+.+.++.+... ..+.-++-
T Consensus 30 G~VlElGLGNGRTydHLRe~~p-~R~I~vfDR~l~~hp~~--------~P~~~~~ilGdi~~tl~~~~~~--g~~a~laH 98 (160)
T PF12692_consen 30 GPVLELGLGNGRTYDHLREIFP-DRRIYVFDRALACHPSS--------TPPEEDLILGDIRETLPALARF--GAGAALAH 98 (160)
T ss_dssp S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-GGG-----------GGGEEES-HHHHHHHHHHH---S-EEEEE
T ss_pred CceEEeccCCCccHHHHHHhCC-CCeEEEEeeecccCCCC--------CCchHheeeccHHHHhHHHHhc--CCceEEEE
Confidence 4799999999999999999998 78999999753221110 1122368999999988873221 34555555
Q ss_pred EeCCccchH---HH----HHHHHccCCCCcEEEEeCCCC
Q 023645 201 VDAEKRMYQ---EY----FELLLQLIRVGGIIVIDNVLW 232 (279)
Q Consensus 201 id~~~~~~~---~~----l~~~~~~Lk~gG~lv~dd~~~ 232 (279)
.|-...+.. .. -..+.++|.|||++|-..-+.
T Consensus 99 aD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 99 ADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp E----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred eecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence 554322211 11 123358999999999877654
No 294
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.34 E-value=0.21 Score=47.91 Aligned_cols=106 Identities=14% Similarity=0.134 Sum_probs=66.0
Q ss_pred cCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEE--Ec-------------Chh
Q 023645 118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK--HG-------------LAA 181 (279)
Q Consensus 118 ~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~--~g-------------d~~ 181 (279)
.++.+|+-+|+|. |..++..++.++ ++|+++|.+++..+.+++ .|-.. +.+- .. +..
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes----lGA~~-v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES----MGAEF-LELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCeE-EEeccccccccccchhhhcchhHH
Confidence 4688999999995 667777888875 689999999998887776 23210 1110 00 111
Q ss_pred hHHHHHHhCCCCCcEEEEEEeCCccc--hHHH-HHHHHccCCCCcEEEEeCCC
Q 023645 182 DSLKALILNGEASSYDFAFVDAEKRM--YQEY-FELLLQLIRVGGIIVIDNVL 231 (279)
Q Consensus 182 ~~l~~~~~~~~~~~fDlI~id~~~~~--~~~~-l~~~~~~Lk~gG~lv~dd~~ 231 (279)
+.......+. -..+|+||....... .+.. .+...+.+||||+++.=.+-
T Consensus 236 ~~~~~~~~~~-~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~ 287 (509)
T PRK09424 236 KAEMALFAEQ-AKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAE 287 (509)
T ss_pred HHHHHHHHhc-cCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccC
Confidence 1111111100 146999997665322 2234 58899999999998865443
No 295
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=95.31 E-value=0.018 Score=50.46 Aligned_cols=102 Identities=21% Similarity=0.175 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHH
Q 023645 105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 184 (279)
Q Consensus 105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l 184 (279)
|.+.+++... ..+..++|+|||.|-.+. ..+.+.++++|++...+..+++. +......+|+....
T Consensus 34 p~v~qfl~~~---~~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p 98 (293)
T KOG1331|consen 34 PMVRQFLDSQ---PTGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLP 98 (293)
T ss_pred HHHHHHHhcc---CCcceeeecccCCcccCc-----CCCcceeeecchhhhhccccccC-------CCceeehhhhhcCC
Confidence 3444444433 235689999999995432 11356899999998887666541 21256667776543
Q ss_pred HHHHhCCCCCcEEEEEEeCC------ccchHHHHHHHHccCCCCcEEEE
Q 023645 185 KALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 185 ~~~~~~~~~~~fDlI~id~~------~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
.. +.+||.++.-+. .......++++.+.|+|||-..+
T Consensus 99 ~~------~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 99 FR------EESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred CC------CCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 22 578999875443 23355688999999999998776
No 296
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.28 E-value=0.16 Score=44.02 Aligned_cols=101 Identities=19% Similarity=0.211 Sum_probs=59.4
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHH-----HHhCCCCcEEEEE---cChhhHHHHHHhC
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYY-----ERAGVSHKVKIKH---GLAADSLKALILN 190 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~-----~~~g~~~~v~~~~---gd~~~~l~~~~~~ 190 (279)
...+|||+|+|+|..++.++... ...|+..|... ..+..+.+. ..+++...+.+.. ++..+. ...
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~-~~~--- 158 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDV-SFR--- 158 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh--cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccH-hhc---
Confidence 46689999999998888888754 47888888754 333333332 2222222343332 222221 111
Q ss_pred CCCCc-EEEEEEeC-C--ccchHHHHHHHHccCCCCcEEEEe
Q 023645 191 GEASS-YDFAFVDA-E--KRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 191 ~~~~~-fDlI~id~-~--~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
... ||+|+... . .+.+......+..+|..+|.+.+-
T Consensus 159 --~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~ 198 (248)
T KOG2793|consen 159 --LPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLA 198 (248)
T ss_pred --cCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEE
Confidence 233 89988642 2 445666677777888888855553
No 297
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=95.28 E-value=0.031 Score=43.31 Aligned_cols=83 Identities=20% Similarity=0.285 Sum_probs=53.7
Q ss_pred cEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC------ccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChh
Q 023645 172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAK 245 (279)
Q Consensus 172 ~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~------~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~ 245 (279)
.+++..||+.+.++.+ ...||+||.|+- .-...++++.+.+++++||++..-.+ .|
T Consensus 32 ~L~L~~gDa~~~l~~l-----~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~--a~----------- 93 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQL-----DARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSS--AG----------- 93 (124)
T ss_dssp EEEEEES-HHHHHHHB------T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES----BH-----------
T ss_pred EEEEEEcHHHHHHHhC-----cccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeec--hH-----------
Confidence 3678999999999887 689999999963 22357899999999999999987322 11
Q ss_pred hHHHHHHHHHhhhCCCeEEEEeec---CCceEEEEE
Q 023645 246 TISIRNFNKNLMEDERVSISMVPI---GDGMTICQK 278 (279)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~~~~lp~---~~G~~i~~~ 278 (279)
..+.-...-+|.+...|- -..+++|.|
T Consensus 94 ------~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 94 ------AVRRALQQAGFEVEKVPGFGRKREMLRAVK 123 (124)
T ss_dssp ------HHHHHHHHCTEEEEEEE-STTSSEEEEEEC
T ss_pred ------HHHHHHHHcCCEEEEcCCCCCcchheEEEc
Confidence 123333566788777662 234555543
No 298
>PRK11524 putative methyltransferase; Provisional
Probab=95.06 E-value=0.042 Score=48.79 Aligned_cols=53 Identities=25% Similarity=0.382 Sum_probs=40.5
Q ss_pred cEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccc---------------h----HHHHHHHHccCCCCcEEEEe
Q 023645 172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM---------------Y----QEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 172 ~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~---------------~----~~~l~~~~~~Lk~gG~lv~d 228 (279)
..+++++|+.+.+..+. +++||+||+|++... + ...+..+.++|||||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~----~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIP----SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcc----cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 35789999998776552 578999999976311 1 35678888999999999873
No 299
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.01 E-value=0.16 Score=45.91 Aligned_cols=99 Identities=20% Similarity=0.268 Sum_probs=59.5
Q ss_pred cCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 118 ~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
.++++||-+|+| .|..+..+++..+ ..+|+++|.+++..+.+++ .|...-+.....+.. ..... .+.+
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~----~~~~~--~g~~ 236 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLD----HYKAE--KGYF 236 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHH----HHhcc--CCCC
Confidence 357789988875 3445555666653 2379999999988877765 343211111111221 11111 2459
Q ss_pred EEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (279)
Q Consensus 197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~ 230 (279)
|+||-.... ...++.+.+.|++||.++.-..
T Consensus 237 D~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 237 DVSFEVSGH---PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CEEEECCCC---HHHHHHHHHHhhcCCEEEEEcc
Confidence 988854432 2356778889999999987543
No 300
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.72 E-value=0.14 Score=38.45 Aligned_cols=88 Identities=23% Similarity=0.231 Sum_probs=59.0
Q ss_pred CccCHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCCCCCcEEEEEEeCC
Q 023645 128 VYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYDFAFVDAE 204 (279)
Q Consensus 128 ~G~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~~~~~fDlI~id~~ 204 (279)
||.|..+..+++.+..++ +|+.+|.+++..+.+++ .+ +.++.||..+. +... .-.+.|.|++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~~----~~~i~gd~~~~~~l~~a----~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----EG----VEVIYGDATDPEVLERA----GIEKADAVVILTD 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TT----SEEEES-TTSHHHHHHT----TGGCESEEEEESS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----cc----cccccccchhhhHHhhc----CccccCEEEEccC
Confidence 677889999988876556 89999999988766554 22 57899999753 3332 1367888888766
Q ss_pred ccchHHHHHHHHccCCCCcEEEE
Q 023645 205 KRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 205 ~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
.....-..-...+.+.|...+++
T Consensus 72 ~d~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 72 DDEENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp SHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCeEEE
Confidence 44433344444566677777776
No 301
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=94.66 E-value=0.1 Score=43.82 Aligned_cols=52 Identities=21% Similarity=0.227 Sum_probs=37.0
Q ss_pred HHHHHHHHhh--cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHH
Q 023645 108 AQLLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKK 162 (279)
Q Consensus 108 ~~~l~~l~~~--~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~ 162 (279)
.+++..++.. .++..|||.-||+|..+....+ + +-+.+|+|++++..+.|++
T Consensus 178 ~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~-l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKASTNPGDIVLDPFAGSGTTAVAAEE-L--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHH-T--T-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhhhccceeeehhhhccChHHHHHHH-c--CCeEEEEeCCHHHHHHhcC
Confidence 4455555543 4577999999999987776555 4 3489999999999999875
No 302
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=94.63 E-value=0.38 Score=42.93 Aligned_cols=100 Identities=21% Similarity=0.296 Sum_probs=61.6
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (279)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~ 194 (279)
....+.+||..|+| .|..+..+++.. +.+|++++.+++..+.+++ .|....+.....+..+.+ ... ...
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~-~~~---~~~ 231 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKK-AAG---LGG 231 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHH-HHh---cCC
Confidence 34566788888876 367777778776 4789999999987766643 344321111111221222 111 145
Q ss_pred cEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645 195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
.+|+++..... ...++.+.+.|+++|.++.-
T Consensus 232 ~~D~vid~~g~---~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 232 GFDVIFDFVGT---QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CceEEEECCCC---HHHHHHHHHHhhcCCEEEEE
Confidence 79987743322 24677888999999999864
No 303
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=94.63 E-value=0.96 Score=39.62 Aligned_cols=109 Identities=11% Similarity=0.138 Sum_probs=65.8
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCC--CCcEEEEEcChhhH-HHHHHhCC-CCCc
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--SHKVKIKHGLAADS-LKALILNG-EASS 195 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~--~~~v~~~~gd~~~~-l~~~~~~~-~~~~ 195 (279)
...|+.+|||.=.-...+ ..+.+.+++=+|. |+.++.-++.+.+.+. ..+.+++..|+.+. ...+...+ +.+.
T Consensus 82 ~~qvV~LGaGlDTr~~Rl--~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRL--PWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred CcEEEEeCCccccHHHhc--CCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 557999999654433333 2232456666666 4566666677776542 45688898888643 23332222 1223
Q ss_pred EEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645 196 YDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL 231 (279)
Q Consensus 196 fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd~~ 231 (279)
.-++++-+. .+.....++.+.....||+.|++|-+.
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 334444432 455667888888888899999998553
No 304
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.53 E-value=0.42 Score=44.09 Aligned_cols=105 Identities=11% Similarity=0.248 Sum_probs=62.9
Q ss_pred CEEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC------C-
Q 023645 121 QRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG------E- 192 (279)
Q Consensus 121 ~~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~------~- 192 (279)
.+|--||- |+.++.+|-.+.. +.+|+|+|+++..++.... | +..+..-+..+.+......| +
T Consensus 10 ~~I~ViGL--GYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G---~~~i~e~~~~~~v~~~v~~g~lraTtd~ 79 (436)
T COG0677 10 ATIGVIGL--GYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----G---ESYIEEPDLDEVVKEAVESGKLRATTDP 79 (436)
T ss_pred eEEEEEcc--ccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----C---cceeecCcHHHHHHHHHhcCCceEecCh
Confidence 35555655 6666666655542 4689999999987765433 2 12233223322232222211 0
Q ss_pred --CCcEEEEEEeCC----------ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645 193 --ASSYDFAFVDAE----------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK 235 (279)
Q Consensus 193 --~~~fDlI~id~~----------~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~ 235 (279)
-..-|++++..+ ........+.+.+.|++|-++++....++|.
T Consensus 80 ~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGT 134 (436)
T COG0677 80 EELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGT 134 (436)
T ss_pred hhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCc
Confidence 125566665322 2224556677789999999999999999997
No 305
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=94.51 E-value=0.15 Score=45.42 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=67.9
Q ss_pred HHHHHHHHHhhcCC-------CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCc-------
Q 023645 107 QAQLLAMLVQILGA-------QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK------- 172 (279)
Q Consensus 107 ~~~~l~~l~~~~~~-------~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~------- 172 (279)
...++..+....++ .+||--|||.|..+..++.... .+-|=|.|--|+-...=.+......++
T Consensus 131 ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~---~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfI 207 (369)
T KOG2798|consen 131 YKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF---KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFI 207 (369)
T ss_pred hhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc---cccccHHHHHHHHHHHHHHHhhccCCcEEEEeee
Confidence 34455555544433 4899999999999999997633 455556665554332222211112221
Q ss_pred --------------------------------EEEEEcChhhHHHHHHhCCCCCcEEEEEEe---CCccchHHHHHHHHc
Q 023645 173 --------------------------------VKIKHGLAADSLKALILNGEASSYDFAFVD---AEKRMYQEYFELLLQ 217 (279)
Q Consensus 173 --------------------------------v~~~~gd~~~~l~~~~~~~~~~~fDlI~id---~~~~~~~~~l~~~~~ 217 (279)
..+-.||+.+..+.- .+.+.||+|+.. ...++..+|++.+.+
T Consensus 208 h~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s---~~~~~~d~VvTcfFIDTa~NileYi~tI~~ 284 (369)
T KOG2798|consen 208 HQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTS---SGAGSYDVVVTCFFIDTAHNILEYIDTIYK 284 (369)
T ss_pred eccccccccccccccccCccccccccCCCCCCccccccceeEEecCc---CCCCccceEEEEEEeechHHHHHHHHHHHH
Confidence 122234444332210 013468988532 124567899999999
Q ss_pred cCCCCcEEEEeCC
Q 023645 218 LIRVGGIIVIDNV 230 (279)
Q Consensus 218 ~Lk~gG~lv~dd~ 230 (279)
.|+|||+.|=-..
T Consensus 285 iLk~GGvWiNlGP 297 (369)
T KOG2798|consen 285 ILKPGGVWINLGP 297 (369)
T ss_pred hccCCcEEEeccc
Confidence 9999999875433
No 306
>PRK11524 putative methyltransferase; Provisional
Probab=94.50 E-value=0.13 Score=45.59 Aligned_cols=56 Identities=5% Similarity=-0.006 Sum_probs=43.9
Q ss_pred HHHHHHHHhh--cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHH
Q 023645 108 AQLLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER 166 (279)
Q Consensus 108 ~~~l~~l~~~--~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~ 166 (279)
..++..++.. .++..|||-.+|+|..++...+ + +-+.+|+|++++.++.|+++++.
T Consensus 195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~-l--gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAKA-S--GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHH-c--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 4556666654 4678999999999987766554 4 34899999999999999999863
No 307
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.50 E-value=0.3 Score=44.29 Aligned_cols=94 Identities=18% Similarity=0.117 Sum_probs=57.4
Q ss_pred cCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 118 ~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
.++.+||-+|+|. |..+..+++......+|+++|.+++..+.+++ .+. . ... +.+.. ...+
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~-~~~----~~~~~------~~g~ 223 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---T-YLI----DDIPE------DLAV 223 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---e-eeh----hhhhh------ccCC
Confidence 4578999999752 32334455542214589999999988777754 221 1 110 11111 2358
Q ss_pred EEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229 (279)
Q Consensus 197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd 229 (279)
|+||-..........++...++|++||.+++-.
T Consensus 224 d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 224 DHAFECVGGRGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred cEEEECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence 988754433223457888899999999998744
No 308
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.37 E-value=0.28 Score=43.74 Aligned_cols=94 Identities=15% Similarity=0.182 Sum_probs=61.7
Q ss_pred EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEE
Q 023645 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201 (279)
Q Consensus 122 ~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~i 201 (279)
+++|+.||.|..++-+.++. --.+.++|+++.+.+.-+.|+. ....+|..+...... ...+|+++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l----~~~~D~l~g 67 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDL----PKDVDLLIG 67 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHH----HHT-SEEEE
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc--------ccccccccccccccc----cccceEEEe
Confidence 79999999999999888762 1368999999998888888774 777888877543322 115999886
Q ss_pred eCC----------------ccc-hHHHHHHHHccCCCCcEEEEeCCC
Q 023645 202 DAE----------------KRM-YQEYFELLLQLIRVGGIIVIDNVL 231 (279)
Q Consensus 202 d~~----------------~~~-~~~~l~~~~~~Lk~gG~lv~dd~~ 231 (279)
..+ ... +..+++ +...++|. ++++.||-
T Consensus 68 gpPCQ~fS~ag~~~~~~d~r~~L~~~~~~-~v~~~~Pk-~~~~ENV~ 112 (335)
T PF00145_consen 68 GPPCQGFSIAGKRKGFDDPRNSLFFEFLR-IVKELKPK-YFLLENVP 112 (335)
T ss_dssp E---TTTSTTSTHHCCCCHTTSHHHHHHH-HHHHHS-S-EEEEEEEG
T ss_pred ccCCceEeccccccccccccchhhHHHHH-HHhhccce-EEEecccc
Confidence 543 111 223333 34556785 78889884
No 309
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=93.85 E-value=0.48 Score=42.95 Aligned_cols=107 Identities=21% Similarity=0.205 Sum_probs=60.3
Q ss_pred hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645 116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (279)
Q Consensus 116 ~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~ 194 (279)
...++.+||-+|+|. |..+..+++.. +.+|+++|.+++..+.+++ .|...-+.....+..+............
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~t~~~ 236 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAFAKAR 236 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhhcccC
Confidence 345678999999854 55666677766 4689999999988777754 2432212211111111212111111122
Q ss_pred cEE----EEEEeCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645 195 SYD----FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 231 (279)
Q Consensus 195 ~fD----lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~ 231 (279)
.+| +|| |..-. ...++.+.+.|++||.+++-...
T Consensus 237 g~d~~~d~v~-d~~g~--~~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 237 GLRSTGWKIF-ECSGS--KPGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred CCCCCcCEEE-ECCCC--hHHHHHHHHHHhcCCeEEEECcC
Confidence 454 454 43321 24566778899999999875543
No 310
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=93.68 E-value=0.98 Score=41.08 Aligned_cols=102 Identities=13% Similarity=0.149 Sum_probs=63.7
Q ss_pred HhhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc-ChhhHHHHHHhCC
Q 023645 115 VQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNG 191 (279)
Q Consensus 115 ~~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~~~~~~ 191 (279)
....++.+||-.|+ +.|..+..+++.. +.+|++++.+++..+.+++. .|...-+..... +..+.+....
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~--- 225 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDAALKRYF--- 225 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHHHHHHHC---
Confidence 34566789999987 3677777788876 47899999888776665432 344321222111 3333333221
Q ss_pred CCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645 192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229 (279)
Q Consensus 192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd 229 (279)
.+.+|+||-.... ..+..+.+.|++||.+++-.
T Consensus 226 -~~gvD~v~d~vG~----~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 226 -PEGIDIYFDNVGG----DMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred -CCCcEEEEECCCH----HHHHHHHHHhccCCEEEEEC
Confidence 2468988843331 35678889999999998643
No 311
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=93.66 E-value=0.55 Score=43.03 Aligned_cols=102 Identities=24% Similarity=0.307 Sum_probs=60.2
Q ss_pred hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645 116 QILGAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (279)
Q Consensus 116 ~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~ 193 (279)
...++.+||-.|+|. |..+..+++.. +. +|+++|.+++..+.+++ .|...-+.....+..+.+.... .
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~----~ 257 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAA--GASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT----G 257 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh----C
Confidence 345677888888752 44445566654 35 69999999988777754 3432211221122222222221 2
Q ss_pred CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645 194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (279)
Q Consensus 194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~ 230 (279)
+.+|+||-.... ...++.+.+.|+++|.++.-..
T Consensus 258 ~g~d~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 258 GGVDYAFEMAGS---VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CCCCEEEECCCC---hHHHHHHHHHHhcCCEEEEEcc
Confidence 368988754322 2456777889999999886443
No 312
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=93.58 E-value=0.18 Score=48.69 Aligned_cols=99 Identities=11% Similarity=0.132 Sum_probs=63.9
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh-----HHHHHHhCCC
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD-----SLKALILNGE 192 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~-----~l~~~~~~~~ 192 (279)
.++..|||+||..|.|....++.+|.++-|+|+|+-|-.. .. ++.-.+.|+.. .+.....
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp-----------~~-~c~t~v~dIttd~cr~~l~k~l~--- 107 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKP-----------IP-NCDTLVEDITTDECRSKLRKILK--- 107 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeeccc-----------CC-ccchhhhhhhHHHHHHHHHHHHH---
Confidence 4567899999999999999999999888999999987321 11 13223333321 1222222
Q ss_pred CCcEEEEEEeCCccc--------------hHHHHHHHHccCCCCcEEEEeCCCC
Q 023645 193 ASSYDFAFVDAEKRM--------------YQEYFELLLQLIRVGGIIVIDNVLW 232 (279)
Q Consensus 193 ~~~fDlI~id~~~~~--------------~~~~l~~~~~~Lk~gG~lv~dd~~~ 232 (279)
..+.|+|+.|+.+.- ....+..+...|+.||.+ ++.++.
T Consensus 108 t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~f-vtkvfr 160 (780)
T KOG1098|consen 108 TWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTF-VTKVFR 160 (780)
T ss_pred hCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcc-cccccc
Confidence 345699998864211 233455556889999994 444543
No 313
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.52 E-value=2.5 Score=35.02 Aligned_cols=102 Identities=17% Similarity=0.319 Sum_probs=56.9
Q ss_pred EEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHH------------HHHhCCCCcEEEEEcChhhHHHHHH
Q 023645 122 RCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKY------------YERAGVSHKVKIKHGLAADSLKALI 188 (279)
Q Consensus 122 ~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~------------~~~~g~~~~v~~~~gd~~~~l~~~~ 188 (279)
+|--+|. |+.++.+|..+.. +.+|+++|++++.++..++. +++.....+..+. .|..+.+
T Consensus 2 ~I~ViGl--GyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai---- 74 (185)
T PF03721_consen 2 KIAVIGL--GYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI---- 74 (185)
T ss_dssp EEEEE----STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH----
T ss_pred EEEEECC--CcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh----
Confidence 4556666 5555554444332 46999999999877665431 1111111223332 2222222
Q ss_pred hCCCCCcEEEEEEeCC----------ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645 189 LNGEASSYDFAFVDAE----------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK 235 (279)
Q Consensus 189 ~~~~~~~fDlI~id~~----------~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~ 235 (279)
...|++|+..+ ........+.+.+.+++|.++++...+.+|.
T Consensus 75 -----~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGt 126 (185)
T PF03721_consen 75 -----KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGT 126 (185)
T ss_dssp -----HH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTH
T ss_pred -----hccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEee
Confidence 34678876432 2235667888889999999999999999987
No 314
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.50 E-value=0.39 Score=46.11 Aligned_cols=101 Identities=16% Similarity=0.220 Sum_probs=59.0
Q ss_pred cCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE---------------cChh
Q 023645 118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH---------------GLAA 181 (279)
Q Consensus 118 ~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~---------------gd~~ 181 (279)
.++.+|+-+|+|. |..+..+++.+ ++.|+.+|.+++..+.+++ .|... +++-. .+..
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~----lGa~~-v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQS----MGAEF-LELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCeE-EeccccccccccccceeecCHHHH
Confidence 3567999999984 56666677776 4689999999987766654 23211 11110 1111
Q ss_pred hHHHHHHhCCCCCcEEEEEEeC---CccchHHHHHHHHccCCCCcEEE
Q 023645 182 DSLKALILNGEASSYDFAFVDA---EKRMYQEYFELLLQLIRVGGIIV 226 (279)
Q Consensus 182 ~~l~~~~~~~~~~~fDlI~id~---~~~~~~~~l~~~~~~Lk~gG~lv 226 (279)
+....+..+ .-..+|+||... ......-..++..+.+|||++++
T Consensus 235 ~~~~~~~~e-~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 235 AAEMELFAA-QAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHH-HhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 111111110 035699997655 22222235677789999998876
No 315
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=93.49 E-value=0.86 Score=41.48 Aligned_cols=103 Identities=19% Similarity=0.264 Sum_probs=60.9
Q ss_pred hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645 116 QILGAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (279)
Q Consensus 116 ~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~ 193 (279)
...++.+||-.|+|. |..+..+++.. +. +|+++|.+++..+.+++ .|...-+.....+..+.+.... ..
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~--G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~---~~ 243 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALA--GASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALT---GG 243 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHh---CC
Confidence 345678999888742 44455566665 34 59999999988777754 3432112222223323222221 12
Q ss_pred CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645 194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (279)
Q Consensus 194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~ 230 (279)
..+|+|+--... ...++.....+++||.+++-..
T Consensus 244 ~g~d~vid~~g~---~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 244 FGADVVIDAVGR---PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCCCEEEECCCC---HHHHHHHHHHhccCCEEEEECC
Confidence 468988743322 2356677889999999987544
No 316
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.42 E-value=0.81 Score=40.95 Aligned_cols=94 Identities=13% Similarity=0.173 Sum_probs=67.1
Q ss_pred CCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645 120 AQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (279)
Q Consensus 120 ~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl 198 (279)
+.+|.-||-| .|..+..+|-.+ ++.|+-+|.|.+.++.....+. .++.....+...+.... .+.|+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v------~~aDl 234 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAV------KKADL 234 (371)
T ss_pred CccEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHh------hhccE
Confidence 4577788877 466777777666 5899999999998877766654 46777777765544433 57888
Q ss_pred EEEe---CCccchHHHHHHHHccCCCCcEEE
Q 023645 199 AFVD---AEKRMYQEYFELLLQLIRVGGIIV 226 (279)
Q Consensus 199 I~id---~~~~~~~~~l~~~~~~Lk~gG~lv 226 (279)
++-. .....+.-..++..+.+|||++|+
T Consensus 235 vIgaVLIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 235 VIGAVLIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred EEEEEEecCCCCceehhHHHHHhcCCCcEEE
Confidence 8632 334445556778889999999876
No 317
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=93.35 E-value=1 Score=38.43 Aligned_cols=98 Identities=22% Similarity=0.313 Sum_probs=60.2
Q ss_pred cCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 118 ~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
.++.+||..|+|. |..+..+++.. +.++++++.+++..+.+++ .+...-+.....+..+.+. . .....+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~-~---~~~~~~ 202 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELR-L---TGGGGA 202 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHH-H---hcCCCC
Confidence 5678999999885 66666677765 4799999999877666543 2322111111112222111 1 114679
Q ss_pred EEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
|+++...... .....+.+.|+++|.++.-
T Consensus 203 d~vi~~~~~~---~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 203 DVVIDAVGGP---ETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred CEEEECCCCH---HHHHHHHHhcccCCEEEEE
Confidence 9998654321 3466677889999998864
No 318
>PRK13699 putative methylase; Provisional
Probab=93.34 E-value=0.33 Score=41.60 Aligned_cols=56 Identities=9% Similarity=0.000 Sum_probs=42.4
Q ss_pred HHHHHHHh--hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh
Q 023645 109 QLLAMLVQ--ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 167 (279)
Q Consensus 109 ~~l~~l~~--~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~ 167 (279)
.++..++. ..++..|||--||+|..+....+. +-+++|+|++++..+.+.+.++..
T Consensus 151 ~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 151 TSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHH
Confidence 34444443 246779999999999877766553 358999999999999999888753
No 319
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=93.28 E-value=0.39 Score=43.94 Aligned_cols=53 Identities=23% Similarity=0.306 Sum_probs=42.6
Q ss_pred HHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHH
Q 023645 108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKK 162 (279)
Q Consensus 108 ~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~ 162 (279)
.+++..+....+...|+|+|.|.|+.+.+++-.. +-.|.+||-|....+.|++
T Consensus 142 selvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 142 SELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHH
Confidence 4555666666788899999999999999998765 4799999999777666654
No 320
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=93.16 E-value=0.47 Score=43.23 Aligned_cols=48 Identities=17% Similarity=0.111 Sum_probs=39.3
Q ss_pred CCEEEEEcCccCHHHHHHHHHCC-------CCCEEEEEeCChhHHHHHHHHHHHh
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLP-------ESGCLVACERDARSLEVAKKYYERA 167 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~-------~~~~v~~iD~s~~~~~~a~~~~~~~ 167 (279)
+-.++|||.|+|....-+++.+. ...++..||+|++..+.-++.++..
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 45899999999999988877651 2468999999999988888887753
No 321
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=93.02 E-value=1.1 Score=38.90 Aligned_cols=130 Identities=23% Similarity=0.366 Sum_probs=65.8
Q ss_pred HHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHH
Q 023645 108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL 187 (279)
Q Consensus 108 ~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~ 187 (279)
..++..+........ +..+.|+-.+.. ..+.+.-+.+.+|++|.-.+..++++.. ..++++++.|..+.+..+
T Consensus 47 ~~yl~~v~~~n~~~~---l~~YPGSP~ia~-~llR~qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG~~~l~al 119 (245)
T PF04378_consen 47 QPYLDAVRALNPDGE---LRFYPGSPAIAA-RLLREQDRLVLFELHPQDFEALKKNFRR---DRRVRVHHRDGYEGLKAL 119 (245)
T ss_dssp HHHHHHHHHHSSSSS-----EEE-HHHHHH-HHS-TTSEEEEE--SHHHHHHHTTS--T---TS-EEEE-S-HHHHHHHH
T ss_pred HHHHHHHHHhccCCC---cCcCCCCHHHHH-HhCCccceEEEEecCchHHHHHHHHhcc---CCccEEEeCchhhhhhhh
Confidence 344444443333322 334555443332 2334467999999999999988888764 347999999999877666
Q ss_pred HhCCCCCcEEEEEEeCC---ccchHHHHHHHHccCC--CCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhh
Q 023645 188 ILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIR--VGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLME 258 (279)
Q Consensus 188 ~~~~~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk--~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~ 258 (279)
... ..+=-+|+||.+ +.+|....+.+...++ +.|++++ |-... + ....+.|.+.+.+
T Consensus 120 lPP--~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~i----WYPi~------~--~~~~~~~~~~l~~ 181 (245)
T PF04378_consen 120 LPP--PERRGLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAI----WYPIK------D--RERVDRFLRALKA 181 (245)
T ss_dssp -S---TTS-EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEE----EEEES------S--HHHHHHHHHHHHH
T ss_pred CCC--CCCCeEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEE----Eeecc------c--HHHHHHHHHHHHh
Confidence 432 244569999987 4445555444444443 4566555 43321 1 1135667777654
No 322
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=92.65 E-value=1.7 Score=38.60 Aligned_cols=100 Identities=15% Similarity=0.178 Sum_probs=62.1
Q ss_pred HHhhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC
Q 023645 114 LVQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG 191 (279)
Q Consensus 114 l~~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~ 191 (279)
.....++.+||=.|. +.|..+..+++.. +.++++++.+++..+.+++ .|...-+.....+..+.+... .
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~---~ 208 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEA---A 208 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHH---C
Confidence 344566788988874 4566677778776 4789999988887666654 354321222222332222222 1
Q ss_pred CCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
...+|+|+-.... ..++...+.|+++|.++.
T Consensus 209 -~~gvd~vld~~g~----~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 209 -PDGIDCYFDNVGG----EFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred -CCCcEEEEECCCH----HHHHHHHHhhccCCEEEE
Confidence 2469988743221 456788899999999885
No 323
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=92.63 E-value=0.35 Score=38.44 Aligned_cols=43 Identities=21% Similarity=0.219 Sum_probs=28.4
Q ss_pred EEcCccC--HHHHHHH-HHCCCCCEEEEEeCChhHHHHHHHH--HHHh
Q 023645 125 EVGVYTG--YSSLAIA-LVLPESGCLVACERDARSLEVAKKY--YERA 167 (279)
Q Consensus 125 EiG~G~G--~~t~~la-~~~~~~~~v~~iD~s~~~~~~a~~~--~~~~ 167 (279)
|||++.| ..+..+. +...++++|+++|++|...+..+++ +...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 8999999 6666554 2344478999999999999998888 5544
No 324
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=92.36 E-value=0.62 Score=43.97 Aligned_cols=96 Identities=7% Similarity=0.054 Sum_probs=64.5
Q ss_pred EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEE
Q 023645 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201 (279)
Q Consensus 122 ~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~i 201 (279)
++|.+|||.-.....+-+.. --.|+.+|.|+-.++........ ......+...|.....- ++++||+|+.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~~--~~~~~~~~~~d~~~l~f------edESFdiVId 120 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNAK--ERPEMQMVEMDMDQLVF------EDESFDIVID 120 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhcccc--CCcceEEEEecchhccC------CCcceeEEEe
Confidence 89999998876665554432 24799999999888776654431 22346777777754311 2678888874
Q ss_pred eCC-------------ccchHHHHHHHHccCCCCcEEEE
Q 023645 202 DAE-------------KRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 202 d~~-------------~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
-+. .......+..+.++|++||..+.
T Consensus 121 kGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 121 KGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred cCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 221 12345678888999999998654
No 325
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=92.30 E-value=0.33 Score=42.19 Aligned_cols=47 Identities=19% Similarity=0.077 Sum_probs=37.4
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCC-------CCEEEEEeCChhHHHHHHHHHHH
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLPE-------SGCLVACERDARSLEVAKKYYER 166 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~~-------~~~v~~iD~s~~~~~~a~~~~~~ 166 (279)
+-+|+|+|.|+|..+.-+++.+.. ..+++.||.||.+.+..++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 459999999999999999887653 25899999999998888887765
No 326
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=92.26 E-value=0.61 Score=40.99 Aligned_cols=102 Identities=17% Similarity=0.208 Sum_probs=70.0
Q ss_pred cCCCEEEEEcCccCHHHHHHH-HHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 118 LGAQRCIEVGVYTGYSSLAIA-LVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la-~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
..++.|+-+|-- -..++.++ ..+| .+|..+|+++..+....+..++.|+++ ++.+.-|....+|.-. ..+|
T Consensus 151 L~gK~I~vvGDD-DLtsia~aLt~mp--k~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr~plpe~~----~~kF 222 (354)
T COG1568 151 LEGKEIFVVGDD-DLTSIALALTGMP--KRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLRNPLPEDL----KRKF 222 (354)
T ss_pred cCCCeEEEEcCc-hhhHHHHHhcCCC--ceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhcccChHHH----HhhC
Confidence 457789999933 33344333 3344 589999999999999999999999875 8888788877555432 5899
Q ss_pred EEEEEeCC--ccchHHHHHHHHccCCCC---cEEEE
Q 023645 197 DFAFVDAE--KRMYQEYFELLLQLIRVG---GIIVI 227 (279)
Q Consensus 197 DlI~id~~--~~~~~~~l~~~~~~Lk~g---G~lv~ 227 (279)
|+++.|++ ......++..=...|+.- |++-+
T Consensus 223 DvfiTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgi 258 (354)
T COG1568 223 DVFITDPPETIKALKLFLGRGIATLKGEGCAGYFGI 258 (354)
T ss_pred CeeecCchhhHHHHHHHHhccHHHhcCCCccceEee
Confidence 99988876 233444454444556654 55544
No 327
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=92.25 E-value=0.24 Score=44.28 Aligned_cols=79 Identities=23% Similarity=0.280 Sum_probs=54.6
Q ss_pred EEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH-HHHHHhCCCCCcEEEEEE
Q 023645 124 IEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS-LKALILNGEASSYDFAFV 201 (279)
Q Consensus 124 LEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~-l~~~~~~~~~~~fDlI~i 201 (279)
+|||+ |.+.++.+.... .+....++|++......|++++.++++++.+.+++....+. +........+..||++.+
T Consensus 107 iDIgt--gasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMc 184 (419)
T KOG2912|consen 107 IDIGT--GASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMC 184 (419)
T ss_pred eeccC--chhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEec
Confidence 67776 556666554322 23568999999999999999999999999898888765442 232211111345899888
Q ss_pred eCC
Q 023645 202 DAE 204 (279)
Q Consensus 202 d~~ 204 (279)
+++
T Consensus 185 NPP 187 (419)
T KOG2912|consen 185 NPP 187 (419)
T ss_pred CCc
Confidence 765
No 328
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=92.24 E-value=0.12 Score=38.79 Aligned_cols=40 Identities=23% Similarity=0.589 Sum_probs=28.8
Q ss_pred cEEEEEEeCC---------ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645 195 SYDFAFVDAE---------KRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234 (279)
Q Consensus 195 ~fDlI~id~~---------~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g 234 (279)
+||+|++-.. .+....+|+.++..|+|||++|+.-=-|..
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~s 49 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKS 49 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHH
Confidence 4899987543 345778999999999999999997655543
No 329
>PLN02740 Alcohol dehydrogenase-like
Probab=92.21 E-value=1.7 Score=39.97 Aligned_cols=102 Identities=14% Similarity=0.218 Sum_probs=59.5
Q ss_pred HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE--cChhhHHHHHHhC
Q 023645 115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKH--GLAADSLKALILN 190 (279)
Q Consensus 115 ~~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~--gd~~~~l~~~~~~ 190 (279)
....++.+||-+|+| .|..+..+++.. +. +|+++|.+++..+.+++ .|...-+.... .+..+.+..+.
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~-- 265 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARAR--GASKIIGVDINPEKFEKGKE----MGITDFINPKDSDKPVHERIREMT-- 265 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHC--CCCcEEEEcCChHHHHHHHH----cCCcEEEecccccchHHHHHHHHh--
Confidence 345667899999875 233445556655 35 69999999988877754 34432122111 11222233221
Q ss_pred CCCCcEEEEEEeCCccchHHHHHHHHccCCCC-cEEEEeC
Q 023645 191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDN 229 (279)
Q Consensus 191 ~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~g-G~lv~dd 229 (279)
.+.+|+||-..... ..+......+++| |.+++-.
T Consensus 266 --~~g~dvvid~~G~~---~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 266 --GGGVDYSFECAGNV---EVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred --CCCCCEEEECCCCh---HHHHHHHHhhhcCCCEEEEEc
Confidence 23699887544322 4566777888886 8877633
No 330
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=92.00 E-value=2.9 Score=37.28 Aligned_cols=101 Identities=18% Similarity=0.193 Sum_probs=61.8
Q ss_pred HHhhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc-ChhhHHHHHHhC
Q 023645 114 LVQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILN 190 (279)
Q Consensus 114 l~~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~~~~~ 190 (279)
.....++.+||=.|. +.|..+..+++.. +.++++++.+++..+.+++ .|...-+..... +..+.....
T Consensus 133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~--- 203 (325)
T TIGR02825 133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKA--- 203 (325)
T ss_pred HhCCCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHh---
Confidence 344566789998884 4667777788775 4689999988887666643 354321121111 222222222
Q ss_pred CCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645 191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 191 ~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
..+.+|+||-.... ..++...+.|++||.++.-
T Consensus 204 -~~~gvdvv~d~~G~----~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 204 -SPDGYDCYFDNVGG----EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred -CCCCeEEEEECCCH----HHHHHHHHHhCcCcEEEEe
Confidence 12469988843322 2457788999999999863
No 331
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=91.99 E-value=0.89 Score=41.98 Aligned_cols=96 Identities=13% Similarity=0.109 Sum_probs=54.2
Q ss_pred CCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 119 GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 119 ~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
++.+|+-+|+| .|..+...+..+ +.+|+.+|.+++..+.+.+.+ +. .+.....+. +.+... -..+|
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~---g~--~v~~~~~~~-~~l~~~-----l~~aD 232 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDAEF---GG--RIHTRYSNA-YEIEDA-----VKRAD 232 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhc---Cc--eeEeccCCH-HHHHHH-----HccCC
Confidence 56789999987 455556666665 368999999987655544332 11 122222222 223332 25689
Q ss_pred EEEEeCC---ccchHHHHHHHHccCCCCcEEEE
Q 023645 198 FAFVDAE---KRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 198 lI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
+|+.... .....-.-+.....++||++++-
T Consensus 233 vVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 233 LLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred EEEEccccCCCCCCcCcCHHHHhcCCCCCEEEE
Confidence 9987542 11111123555677899877654
No 332
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=91.96 E-value=1.6 Score=39.34 Aligned_cols=103 Identities=16% Similarity=0.236 Sum_probs=58.8
Q ss_pred hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645 116 QILGAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (279)
Q Consensus 116 ~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~ 193 (279)
...++.+||-.|+|. |..+..+++..+ . .|++++.+++..+.+++ .|...-+.....+ .+.+.... ..
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G--~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~-~~~~~~~~---~~ 226 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALG--AKSVTAIDINSEKLALAKS----LGAMQTFNSREMS-APQIQSVL---RE 226 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEECCCHHHHHHHHH----cCCceEecCcccC-HHHHHHHh---cC
Confidence 344677999988742 444455666653 4 47899999887776643 3432111111112 12222221 13
Q ss_pred CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645 194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (279)
Q Consensus 194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~ 230 (279)
..+|.+++|..-. ...+....+.|++||.+++-..
T Consensus 227 ~~~d~~v~d~~G~--~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 227 LRFDQLILETAGV--PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred CCCCeEEEECCCC--HHHHHHHHHHhhcCCEEEEEcc
Confidence 4688555554322 2467778899999999987543
No 333
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.82 E-value=0.25 Score=45.14 Aligned_cols=97 Identities=23% Similarity=0.269 Sum_probs=73.0
Q ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (279)
Q Consensus 103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~ 182 (279)
+.....=+..+++...++.+|+|+.|..|..|..++..+...+++.++|.+++..+..++.+..+|.+. ++...+|+..
T Consensus 197 lqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~df~~ 275 (413)
T KOG2360|consen 197 LQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI-VESVEGDFLN 275 (413)
T ss_pred EechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCc-cccccccccC
Confidence 333334445566666778899999999999999999888778999999999999999999999999875 7777898876
Q ss_pred HHHHHHhCCCCCcEEEEEEeCC
Q 023645 183 SLKALILNGEASSYDFAFVDAE 204 (279)
Q Consensus 183 ~l~~~~~~~~~~~fDlI~id~~ 204 (279)
. +... .-...-.|++|++
T Consensus 276 t-~~~~---~~~~v~~iL~Dps 293 (413)
T KOG2360|consen 276 T-ATPE---KFRDVTYILVDPS 293 (413)
T ss_pred C-CCcc---cccceeEEEeCCC
Confidence 4 2110 0134456777654
No 334
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=91.80 E-value=2.7 Score=37.73 Aligned_cols=100 Identities=13% Similarity=0.121 Sum_probs=62.2
Q ss_pred HhhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc-ChhhHHHHHHhCC
Q 023645 115 VQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNG 191 (279)
Q Consensus 115 ~~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~~~~~~ 191 (279)
....++.+||=.|+ |.|..+..+++.. +.++++++.+++..+.+++. .|...-+..... +..+.+... .
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~---~ 218 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRY---F 218 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHh---C
Confidence 44567789998886 4566667777775 47899998888776666542 344321221111 332323222 1
Q ss_pred CCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
...+|+||-.... ..+..+.+.|+++|.++.
T Consensus 219 -~~gvd~v~d~~g~----~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 219 -PNGIDIYFDNVGG----KMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred -CCCcEEEEECCCH----HHHHHHHHHhccCcEEEE
Confidence 2569988843321 457788899999999885
No 335
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.77 E-value=0.83 Score=41.15 Aligned_cols=92 Identities=14% Similarity=0.105 Sum_probs=59.5
Q ss_pred EEEEcCccCHHHHHHHHHCCCCCE-EEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEE
Q 023645 123 CIEVGVYTGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201 (279)
Q Consensus 123 VLEiG~G~G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~i 201 (279)
|+|+.||.|..+.-+.++ +.+ +.++|+++.+.+.-+.|+. + .+..+|..+..... -..+|+++.
T Consensus 1 vidLF~G~GG~~~Gl~~a---G~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~-----~~~~dvl~g 65 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA---GFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSD-----IPDFDILLG 65 (315)
T ss_pred CEEEecCccHHHHHHHHc---CCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhh-----CCCcCEEEe
Confidence 689999999999888765 344 5689999998888777653 1 34567776653321 245898875
Q ss_pred eCC------------ccc-----hHHHHHHHHccCCCCcEEEEeCCC
Q 023645 202 DAE------------KRM-----YQEYFELLLQLIRVGGIIVIDNVL 231 (279)
Q Consensus 202 d~~------------~~~-----~~~~l~~~~~~Lk~gG~lv~dd~~ 231 (279)
..+ ..+ +..++ .+...++|. ++++.||-
T Consensus 66 g~PCq~fS~ag~~~~~~d~r~~L~~~~~-r~i~~~~P~-~~v~ENV~ 110 (315)
T TIGR00675 66 GFPCQPFSIAGKRKGFEDTRGTLFFEIV-RILKEKKPK-FFLLENVK 110 (315)
T ss_pred cCCCcccchhcccCCCCCchhhHHHHHH-HHHhhcCCC-EEEeeccH
Confidence 432 011 12222 233556775 88888884
No 336
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=91.65 E-value=2.3 Score=38.13 Aligned_cols=94 Identities=17% Similarity=0.196 Sum_probs=58.2
Q ss_pred CEEEEEcC--ccCHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 121 QRCIEVGV--YTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 121 ~~VLEiG~--G~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
.+||=.|. |.|..+..+++.. +. +|++++.+++..+.+++. .|...-+.....+..+.+..+ . ...+|
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~---~-~~gvd 226 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLREL---C-PEGVD 226 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHH---C-CCCce
Confidence 78988885 4666777788876 45 799999988776665543 344321222222333333332 1 25699
Q ss_pred EEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
+||-.... ..++.+.+.|+++|.++.
T Consensus 227 ~vid~~g~----~~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 227 VYFDNVGG----EISDTVISQMNENSHIIL 252 (345)
T ss_pred EEEECCCc----HHHHHHHHHhccCCEEEE
Confidence 88843222 125678889999999886
No 337
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=91.63 E-value=1 Score=40.85 Aligned_cols=99 Identities=17% Similarity=0.082 Sum_probs=65.4
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC-cEEE
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS-SYDF 198 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~-~fDl 198 (279)
..+++|+.||.|...+-+..+. ---+.++|+++.+++.-+.++.. ..++.+|..+...... .. .+|+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~----~~~~~Dv 70 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEAL----RKSDVDV 70 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhc----cccCCCE
Confidence 3489999999999998887753 13578999999988887777652 3566677665433221 12 7898
Q ss_pred EEEeCCc----------------cchHHHHHHHHccCCCCcEEEEeCCC
Q 023645 199 AFVDAEK----------------RMYQEYFELLLQLIRVGGIIVIDNVL 231 (279)
Q Consensus 199 I~id~~~----------------~~~~~~l~~~~~~Lk~gG~lv~dd~~ 231 (279)
++-..+. ....-.+..+...++| -++|+.||-
T Consensus 71 ligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~ 118 (328)
T COG0270 71 LIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVK 118 (328)
T ss_pred EEeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCc
Confidence 8754331 1111234445567788 799999984
No 338
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=91.61 E-value=1.8 Score=39.14 Aligned_cols=103 Identities=17% Similarity=0.255 Sum_probs=64.9
Q ss_pred HhhcCCCEEEEEcCc--cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645 115 VQILGAQRCIEVGVY--TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (279)
Q Consensus 115 ~~~~~~~~VLEiG~G--~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~ 192 (279)
....++++||-.|.. .|..++.|++++. ++++++-.+++..+. ++..|-..-+.+...|+.+.+..+. +
T Consensus 138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~~----~~~lGAd~vi~y~~~~~~~~v~~~t---~ 208 (326)
T COG0604 138 AGLKPGETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLEL----LKELGADHVINYREEDFVEQVRELT---G 208 (326)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHHH----HHhcCCCEEEcCCcccHHHHHHHHc---C
Confidence 335568899999844 4556777888864 366666666655443 3444544445555666665555442 1
Q ss_pred CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645 193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (279)
Q Consensus 193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~ 230 (279)
...+|+|+-.... ..+......|+++|.++.-..
T Consensus 209 g~gvDvv~D~vG~----~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 209 GKGVDVVLDTVGG----DTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred CCCceEEEECCCH----HHHHHHHHHhccCCEEEEEec
Confidence 2469999854432 446667888999999887433
No 339
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=91.48 E-value=5.6 Score=37.31 Aligned_cols=105 Identities=10% Similarity=0.185 Sum_probs=59.5
Q ss_pred CEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC------CC
Q 023645 121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG------EA 193 (279)
Q Consensus 121 ~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~------~~ 193 (279)
++|--||.|. .+..++..+. .+.+|+++|.+++.++..+. |. +.+...+..+.+......+ ..
T Consensus 4 ~kI~VIGlG~--~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~-----g~---~~~~e~~l~~~l~~~~~~g~l~~~~~~ 73 (415)
T PRK11064 4 ETISVIGLGY--IGLPTAAAFASRQKQVIGVDINQHAVDTINR-----GE---IHIVEPDLDMVVKTAVEGGYLRATTTP 73 (415)
T ss_pred cEEEEECcch--hhHHHHHHHHhCCCEEEEEeCCHHHHHHHHC-----CC---CCcCCCCHHHHHHHHhhcCceeeeccc
Confidence 4677788764 3344443332 14689999999987764221 11 1222222222221111000 01
Q ss_pred CcEEEEEEeCCc----------cchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645 194 SSYDFAFVDAEK----------RMYQEYFELLLQLIRVGGIIVIDNVLWHGK 235 (279)
Q Consensus 194 ~~fDlI~id~~~----------~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~ 235 (279)
..-|+||+..+. .......+.+.+.+++|.++|......+|.
T Consensus 74 ~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgt 125 (415)
T PRK11064 74 EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGA 125 (415)
T ss_pred ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCH
Confidence 246888876543 345556777889999999888888877775
No 340
>PTZ00357 methyltransferase; Provisional
Probab=91.45 E-value=0.88 Score=44.91 Aligned_cols=103 Identities=11% Similarity=0.077 Sum_probs=65.9
Q ss_pred EEEEEcCccCHHHHHHHHHC---CCCCEEEEEeCChhHHHHHHHHHH-HhCC-------CCcEEEEEcChhhHHHHHHhC
Q 023645 122 RCIEVGVYTGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYE-RAGV-------SHKVKIKHGLAADSLKALILN 190 (279)
Q Consensus 122 ~VLEiG~G~G~~t~~la~~~---~~~~~v~~iD~s~~~~~~a~~~~~-~~g~-------~~~v~~~~gd~~~~l~~~~~~ 190 (279)
.|+-+|+|.|-..-...++. ....+|++||.++..+.....+.. ...+ .++|+++..|..++-......
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 68999999999776655443 334689999999776545444332 1223 346999999998763210000
Q ss_pred -----CCCCcEEEEEEe-----CCccchHHHHHHHHccCCC----CcE
Q 023645 191 -----GEASSYDFAFVD-----AEKRMYQEYFELLLQLIRV----GGI 224 (279)
Q Consensus 191 -----~~~~~fDlI~id-----~~~~~~~~~l~~~~~~Lk~----gG~ 224 (279)
..-+++|+|+.- ++-+--++.|+-+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 001479999853 2344556778888888876 675
No 341
>PLN02827 Alcohol dehydrogenase-like
Probab=91.41 E-value=2.1 Score=39.36 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=58.7
Q ss_pred HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE--cChhhHHHHHHhCC
Q 023645 115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH--GLAADSLKALILNG 191 (279)
Q Consensus 115 ~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~--gd~~~~l~~~~~~~ 191 (279)
....++.+||-.|+|. |..+..+++..+ ...|+++|.+++..+.+++ .|...-+.... .+..+.+..+.
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~--- 260 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMT--- 260 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHh---
Confidence 3455678999988642 334445566553 2368899998887766644 35422111111 12222222221
Q ss_pred CCCcEEEEEEeCCccchHHHHHHHHccCCCC-cEEEEeC
Q 023645 192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDN 229 (279)
Q Consensus 192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~g-G~lv~dd 229 (279)
.+.+|+||-.... ...+....+.+++| |.+++-.
T Consensus 261 -~~g~d~vid~~G~---~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 261 -GGGADYSFECVGD---TGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred -CCCCCEEEECCCC---hHHHHHHHHhhccCCCEEEEEC
Confidence 2368988754332 23466778889998 9998643
No 342
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=91.36 E-value=0.15 Score=47.15 Aligned_cols=65 Identities=18% Similarity=0.054 Sum_probs=56.6
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCc-EEEEEcChhhHHH
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK-VKIKHGLAADSLK 185 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~-v~~~~gd~~~~l~ 185 (279)
.++..|-|+.||.|-.++.++.. +++|++-|.+++++++.+.++..+.+... ++++..|+.+++.
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred CCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 45678999999999999888875 58999999999999999999998777665 8999999988773
No 343
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.30 E-value=2.2 Score=38.23 Aligned_cols=100 Identities=20% Similarity=0.275 Sum_probs=57.7
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCE-EEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (279)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~ 193 (279)
...++.+||-+|+| .|..+..+++..+ .+ |++++.+++..+.+++ .|...-+.....+ .+.+.... ..
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G--~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~-~~~~~~~~---~~ 229 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARALG--AEDVIGVDPSPERLELAKA----LGADFVINSGQDD-VQEIRELT---SG 229 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHH----hCCCEEEcCCcch-HHHHHHHh---CC
Confidence 34567899888864 2334455666653 55 9999999887766644 3432211221112 22222221 12
Q ss_pred CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645 194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
..+|+||-..... ..+....+.|+++|.+++-
T Consensus 230 ~~~d~vid~~g~~---~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 230 AGADVAIECSGNT---AARRLALEAVRPWGRLVLV 261 (339)
T ss_pred CCCCEEEECCCCH---HHHHHHHHHhhcCCEEEEE
Confidence 4799888543322 3456677889999999863
No 344
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=91.30 E-value=8.8 Score=33.36 Aligned_cols=135 Identities=16% Similarity=0.176 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (279)
Q Consensus 103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~ 182 (279)
+......++..+-..+++.+ |..-||+-..+..+.+. .-++..+|+.|+-....+.++. -..++++..+|...
T Consensus 73 lpa~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~~L~~~f~---~d~~vrv~~~DG~~ 145 (279)
T COG2961 73 LPAELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLRE---QDRLVLTELHPSDAPLLRNNFA---GDRRVRVLRGDGFL 145 (279)
T ss_pred chHHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcch---hceeeeeecCccHHHHHHHHhC---CCcceEEEecCcHH
Confidence 34555566666656555554 67777776666666554 4699999999999999999887 34579999999987
Q ss_pred HHHHHHhCCCCCcEEEEEEeCCcc---chHHHHHHHHccCC--CCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhh
Q 023645 183 SLKALILNGEASSYDFAFVDAEKR---MYQEYFELLLQLIR--VGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLM 257 (279)
Q Consensus 183 ~l~~~~~~~~~~~fDlI~id~~~~---~~~~~l~~~~~~Lk--~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~ 257 (279)
.+...... .++=-+|++|++.+ +|....+.+...++ ++|+.++ |--.. ....+++|.+.+.
T Consensus 146 ~l~a~LPP--~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yai----WYPik--------~r~~~~~f~~~L~ 211 (279)
T COG2961 146 ALKAHLPP--KERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAI----WYPIK--------DRRQIRRFLRALE 211 (279)
T ss_pred HHhhhCCC--CCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEE----EEeec--------chHHHHHHHHHHh
Confidence 66554322 24567999999844 45444444433333 3455554 32211 1234677877775
Q ss_pred h
Q 023645 258 E 258 (279)
Q Consensus 258 ~ 258 (279)
+
T Consensus 212 ~ 212 (279)
T COG2961 212 A 212 (279)
T ss_pred h
Confidence 4
No 345
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=91.14 E-value=2.1 Score=38.43 Aligned_cols=102 Identities=23% Similarity=0.320 Sum_probs=58.6
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (279)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~ 194 (279)
...++.+||-.|+| .|..+..+++..+ ..++++++.+++..+.+++ .|...-+.....+..+.+.... ...
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~---~~~ 235 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELT---GGR 235 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHc---CCC
Confidence 44567788887764 3556666777653 2478888888766655543 2322111222222222222221 135
Q ss_pred cEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645 195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
.+|++|-.... ...+....+.|+++|.++.-
T Consensus 236 ~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 236 GVDCVIEAVGF---EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CCcEEEEccCC---HHHHHHHHHHhhcCCEEEEE
Confidence 69988743222 14677788999999998853
No 346
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=91.13 E-value=3 Score=37.66 Aligned_cols=104 Identities=23% Similarity=0.302 Sum_probs=61.5
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (279)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~ 194 (279)
...++.+||-.|+| .|..+..+++..+ ...++++|.+++..+.+++ .|...-+.....+..+.+..+. ...
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~---~~~ 234 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLT---GGK 234 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHh---CCC
Confidence 44567788888865 3455566677654 2369999999877766654 3442212222222222222221 134
Q ss_pred cEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645 195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (279)
Q Consensus 195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~ 230 (279)
.+|+++-.... ...+..+.+.|+++|.++.-.+
T Consensus 235 ~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 235 GVDAVIIAGGG---QDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred CCcEEEECCCC---HHHHHHHHHHhhcCCEEEEecc
Confidence 69988754332 2456788889999999886443
No 347
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=91.09 E-value=3.4 Score=38.11 Aligned_cols=112 Identities=17% Similarity=0.122 Sum_probs=75.5
Q ss_pred hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHH-------HHHhCC-CCcEEEEEcChhhH--HH
Q 023645 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKY-------YERAGV-SHKVKIKHGLAADS--LK 185 (279)
Q Consensus 116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~-------~~~~g~-~~~v~~~~gd~~~~--l~ 185 (279)
...+.....|+|+|.|......+.... ...-+|+++.....+.|..+ .+..|. .+.++.+++++.+. ..
T Consensus 189 ~~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~ 267 (419)
T KOG3924|consen 189 KLGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVT 267 (419)
T ss_pred ccCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHH
Confidence 345677899999999999888876543 34567888877665555433 233344 34578889988652 22
Q ss_pred HHHhCCCCCcEEEEEEeCCccc--hHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645 186 ALILNGEASSYDFAFVDAEKRM--YQEYFELLLQLIRVGGIIVIDNVLWH 233 (279)
Q Consensus 186 ~~~~~~~~~~fDlI~id~~~~~--~~~~l~~~~~~Lk~gG~lv~dd~~~~ 233 (279)
.+ ...-++||++...-+ ..--+++++.-+++|..|+-.+.+.+
T Consensus 268 eI-----~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 268 EI-----QTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred HH-----hhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEeccccccc
Confidence 33 356789998865222 22234577888999999998777655
No 348
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.91 E-value=1.4 Score=40.09 Aligned_cols=96 Identities=14% Similarity=0.186 Sum_probs=57.3
Q ss_pred cCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeC---ChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645 118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACER---DARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (279)
Q Consensus 118 ~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~---s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~ 193 (279)
.++.+||-+|+|. |..+..+++.. +.+|++++. +++..+.++ +.|... +.....+..+ .. . .
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~----~~Ga~~-v~~~~~~~~~-~~-~-----~ 236 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVE----ELGATY-VNSSKTPVAE-VK-L-----V 236 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHH----HcCCEE-ecCCccchhh-hh-h-----c
Confidence 3577999998763 55566677765 468999987 565555544 334321 2111111111 11 1 3
Q ss_pred CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645 194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (279)
Q Consensus 194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~ 230 (279)
..+|+||--.... ..+....+.|++||.+++-..
T Consensus 237 ~~~d~vid~~g~~---~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 237 GEFDLIIEATGVP---PLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred CCCCEEEECcCCH---HHHHHHHHHccCCcEEEEEec
Confidence 5689887654422 357788899999999887443
No 349
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=90.88 E-value=3.2 Score=36.28 Aligned_cols=101 Identities=21% Similarity=0.235 Sum_probs=58.5
Q ss_pred cCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 118 ~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
.++.+||-+|+| .|..+..+++..+ ..+|+++|.+++..+.+++ .|... .+-..+..+.+..+. ....+
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~--~i~~~~~~~~~~~~~---~~~g~ 188 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAG-AARVVAADPSPDRRELALS----FGATA--LAEPEVLAERQGGLQ---NGRGV 188 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCcE--ecCchhhHHHHHHHh---CCCCC
Confidence 366789988875 2444555666653 2248999999887766655 34321 111111111122111 12468
Q ss_pred EEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 231 (279)
Q Consensus 197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~ 231 (279)
|+||-.... ...++.+.+.|+++|.++.-...
T Consensus 189 d~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 189 DVALEFSGA---TAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred CEEEECCCC---hHHHHHHHHHhcCCCEEEEeccC
Confidence 988754332 24567788999999999875544
No 350
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=90.66 E-value=3.7 Score=37.55 Aligned_cols=102 Identities=17% Similarity=0.213 Sum_probs=59.6
Q ss_pred HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE--cChhhHHHHHHhC
Q 023645 115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKH--GLAADSLKALILN 190 (279)
Q Consensus 115 ~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~--gd~~~~l~~~~~~ 190 (279)
....++.+||-.|+|. |..+..+++..+ + +|+++|.+++..+.+++ .|...-+.... .+..+.+..+.
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G--~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~-- 252 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAK--ASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEIT-- 252 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHh--
Confidence 3445678999998752 445566677653 5 79999999988777754 34422121111 11222222221
Q ss_pred CCCCcEEEEEEeCCccchHHHHHHHHccCCCC-cEEEEeC
Q 023645 191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDN 229 (279)
Q Consensus 191 ~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~g-G~lv~dd 229 (279)
.+.+|+||-.... ...+..+.+.+++| |.++.-.
T Consensus 253 --~~g~d~vid~~G~---~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 253 --DGGVDYSFECIGN---VNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred --CCCCCEEEECCCC---HHHHHHHHHHhhcCCCeEEEEe
Confidence 2368988754332 24566778889886 8877643
No 351
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.57 E-value=3 Score=37.26 Aligned_cols=108 Identities=15% Similarity=0.169 Sum_probs=69.4
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCC--CCcEEEEEcChh-h-HHHHHHhCC-CCC
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--SHKVKIKHGLAA-D-SLKALILNG-EAS 194 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~--~~~v~~~~gd~~-~-~l~~~~~~~-~~~ 194 (279)
...|+-+|||- -|...--..+.+.+|+=+|. |+.++.=++.+...+. ..+++++..|+. + +...+.+.| +..
T Consensus 93 ~~qvViLgaGL--DTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 93 IRQVVILGAGL--DTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred ccEEEEecccc--ccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 57899999964 34332222233467777777 6777777777776653 235889999987 3 455554433 223
Q ss_pred cEEEEEEeC-----CccchHHHHHHHHccCCCCcEEEEeCC
Q 023645 195 SYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDNV 230 (279)
Q Consensus 195 ~fDlI~id~-----~~~~~~~~l~~~~~~Lk~gG~lv~dd~ 230 (279)
..=++++-+ ..+....+|..+.....||..++++-.
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 333444443 255677889999999888888877653
No 352
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=90.54 E-value=1.3 Score=34.20 Aligned_cols=94 Identities=13% Similarity=0.033 Sum_probs=47.1
Q ss_pred HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645 113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (279)
Q Consensus 113 ~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~ 192 (279)
.+++.....+|+|+|.|.=.-....+... +..|+++|+++. ... ..+.++..|..+--..+
T Consensus 7 ~ia~~~~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~-------~a~-----~g~~~v~DDif~P~l~i----- 67 (127)
T PF03686_consen 7 YIARLNNYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR-------KAP-----EGVNFVVDDIFNPNLEI----- 67 (127)
T ss_dssp HHHHHS-SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S----------------STTEE---SSS--HHH-----
T ss_pred HHHHhCCCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc-------ccc-----cCcceeeecccCCCHHH-----
Confidence 34445566699999998765444333332 479999999987 111 23678888887632232
Q ss_pred CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
-...|+|+.--+.......+-.+.+. -|.-+++
T Consensus 68 Y~~a~lIYSiRPP~El~~~il~lA~~--v~adlii 100 (127)
T PF03686_consen 68 YEGADLIYSIRPPPELQPPILELAKK--VGADLII 100 (127)
T ss_dssp HTTEEEEEEES--TTSHHHHHHHHHH--HT-EEEE
T ss_pred hcCCcEEEEeCCChHHhHHHHHHHHH--hCCCEEE
Confidence 25789999876655555555555442 3444554
No 353
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=90.54 E-value=2.9 Score=37.95 Aligned_cols=108 Identities=24% Similarity=0.305 Sum_probs=66.8
Q ss_pred HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc-ChhhHHHHHHhCCC
Q 023645 115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGE 192 (279)
Q Consensus 115 ~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~~~~~~~ 192 (279)
++..++.+|.-+|||. |..++.-|.... ..+++++|++++..+.|++. |-.+-+.-... |..+.+..+-
T Consensus 181 a~v~~G~tvaV~GlGgVGlaaI~gA~~ag-A~~IiAvD~~~~Kl~~A~~f----GAT~~vn~~~~~~vv~~i~~~T---- 251 (366)
T COG1062 181 AKVEPGDTVAVFGLGGVGLAAIQGAKAAG-AGRIIAVDINPEKLELAKKF----GATHFVNPKEVDDVVEAIVELT---- 251 (366)
T ss_pred ccCCCCCeEEEEeccHhHHHHHHHHHHcC-CceEEEEeCCHHHHHHHHhc----CCceeecchhhhhHHHHHHHhc----
Confidence 3455678999999974 555665565554 57999999999999888773 33322222212 4444444442
Q ss_pred CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645 193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234 (279)
Q Consensus 193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g 234 (279)
++..|.+|--... .+.++..+..+.++|..++-.+--.|
T Consensus 252 ~gG~d~~~e~~G~---~~~~~~al~~~~~~G~~v~iGv~~~~ 290 (366)
T COG1062 252 DGGADYAFECVGN---VEVMRQALEATHRGGTSVIIGVAGAG 290 (366)
T ss_pred CCCCCEEEEccCC---HHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 3366777643321 23566677777779988875554333
No 354
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=90.52 E-value=3.3 Score=37.23 Aligned_cols=94 Identities=17% Similarity=0.162 Sum_probs=58.0
Q ss_pred HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645 115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (279)
Q Consensus 115 ~~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~ 193 (279)
....++.+||-.|+| .|..+..+++.. +.+|++++.+++..+.+++ .|... ++ +..+. . .
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~----~Ga~~---vi--~~~~~-~-------~ 221 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALA----LGAAS---AG--GAYDT-P-------P 221 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----hCCce---ec--ccccc-C-------c
Confidence 344567899999874 233445566665 4689999999887666554 45432 11 11010 0 2
Q ss_pred CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645 194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (279)
Q Consensus 194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~ 230 (279)
+.+|+++..... ...+....+.|++||.+++-..
T Consensus 222 ~~~d~~i~~~~~---~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 222 EPLDAAILFAPA---GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ccceEEEECCCc---HHHHHHHHHhhCCCcEEEEEec
Confidence 457876643322 2467788899999999987544
No 355
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=90.43 E-value=6.7 Score=31.77 Aligned_cols=108 Identities=19% Similarity=0.147 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHhh--cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645 103 VSPDQAQLLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (279)
Q Consensus 103 ~~~~~~~~l~~l~~~--~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~ 180 (279)
-+.++...+...+.. .+..+|+=|||=+-+..+.- ....+.+++..|.+.... ..+ .. .|+.=|.
T Consensus 7 Ys~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF~--------~~~--~~-~F~fyD~ 73 (162)
T PF10237_consen 7 YSDETAEFLARELLDGALDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRFE--------QFG--GD-EFVFYDY 73 (162)
T ss_pred cCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchHH--------hcC--Cc-ceEECCC
Confidence 345555555554443 34578999998554444332 122356899999997543 222 12 2333333
Q ss_pred hh--HHHHHHhCCCCCcEEEEEEeCCc--cc-hHHHHHHHHccCCCCcEEEE
Q 023645 181 AD--SLKALILNGEASSYDFAFVDAEK--RM-YQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 181 ~~--~l~~~~~~~~~~~fDlI~id~~~--~~-~~~~l~~~~~~Lk~gG~lv~ 227 (279)
.+ .++... .++||+|++|++. +. .....+.+.-++++++.+++
T Consensus 74 ~~p~~~~~~l----~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~ 121 (162)
T PF10237_consen 74 NEPEELPEEL----KGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIIL 121 (162)
T ss_pred CChhhhhhhc----CCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEE
Confidence 22 222211 5799999999984 22 22333444556677777775
No 356
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=89.83 E-value=11 Score=35.57 Aligned_cols=104 Identities=14% Similarity=0.245 Sum_probs=62.8
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHH---HhCC-----CCcEEEEEcChhhHHHHHHhC
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE---RAGV-----SHKVKIKHGLAADSLKALILN 190 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~---~~g~-----~~~v~~~~gd~~~~l~~~~~~ 190 (279)
++++|--||. |+.++.++..+..+.+|+++|++++.++..++... +.++ ..+..+. .+. + .
T Consensus 5 ~~mkI~vIGl--GyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t-~~~-~---~---- 73 (425)
T PRK15182 5 DEVKIAIIGL--GYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFT-SEI-E---K---- 73 (425)
T ss_pred CCCeEEEECc--CcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEE-eCH-H---H----
Confidence 4467777765 77777777777656789999999988777652110 0000 0011111 111 1 1
Q ss_pred CCCCcEEEEEEeCCc----------cchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645 191 GEASSYDFAFVDAEK----------RMYQEYFELLLQLIRVGGIIVIDNVLWHGK 235 (279)
Q Consensus 191 ~~~~~fDlI~id~~~----------~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~ 235 (279)
-..-|++|+.-+. .......+.+.+.|++|.++|......+|.
T Consensus 74 --~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgt 126 (425)
T PRK15182 74 --IKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGC 126 (425)
T ss_pred --HcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcc
Confidence 1456888865331 122333456778899999999988888886
No 357
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=89.81 E-value=4.7 Score=36.82 Aligned_cols=103 Identities=18% Similarity=0.213 Sum_probs=60.2
Q ss_pred HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc--ChhhHHHHHHhC
Q 023645 115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHG--LAADSLKALILN 190 (279)
Q Consensus 115 ~~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g--d~~~~l~~~~~~ 190 (279)
....++.+||-+|+| .|..+..+++..+ . +|+++|.+++..+.+++ .|...-+..... +..+.+..+.
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G--~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~-- 253 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAG--ASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMT-- 253 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHh--
Confidence 345567899988864 2444555666653 5 79999999988776654 344221211111 1222222221
Q ss_pred CCCCcEEEEEEeCCccchHHHHHHHHccCCCC-cEEEEeCC
Q 023645 191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV 230 (279)
Q Consensus 191 ~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~g-G~lv~dd~ 230 (279)
.+.+|+||-.... ...+..+.+.|+++ |.++.-..
T Consensus 254 --~~g~d~vid~~g~---~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 254 --DGGVDYTFECIGN---VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred --CCCCcEEEECCCC---hHHHHHHHHhhccCCCeEEEEcc
Confidence 2369988854332 24567778889887 88876443
No 358
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=89.78 E-value=2.2 Score=38.05 Aligned_cols=88 Identities=15% Similarity=0.200 Sum_probs=51.1
Q ss_pred CEEEEEcCccCHHHHHHHHHCCCC---CEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 121 QRCIEVGVYTGYSSLAIALVLPES---GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 121 ~~VLEiG~G~G~~t~~la~~~~~~---~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
++|.=||+| ..+..++..+... .+|+++|.+++..+.+++ .|... . ...+. ... -...|
T Consensus 7 ~~I~IIG~G--~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~--~-~~~~~----~~~-----~~~aD 68 (307)
T PRK07502 7 DRVALIGIG--LIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGD--R-VTTSA----AEA-----VKGAD 68 (307)
T ss_pred cEEEEEeeC--HHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCc--e-ecCCH----HHH-----hcCCC
Confidence 478888875 4444444433222 389999999887665543 33311 1 11111 111 24578
Q ss_pred EEEEeCCccchHHHHHHHHccCCCCcEEE
Q 023645 198 FAFVDAEKRMYQEYFELLLQLIRVGGIIV 226 (279)
Q Consensus 198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv 226 (279)
+|++..+.......++.+.+.+++|++++
T Consensus 69 vViiavp~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 69 LVILCVPVGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred EEEECCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 88887766555666777777788876543
No 359
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=89.70 E-value=9.6 Score=36.44 Aligned_cols=105 Identities=9% Similarity=0.062 Sum_probs=58.5
Q ss_pred CEEEEEcCccCHHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHH---HhCC--------CCcEEEEEcChhhHHHHHH
Q 023645 121 QRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYE---RAGV--------SHKVKIKHGLAADSLKALI 188 (279)
Q Consensus 121 ~~VLEiG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~---~~g~--------~~~v~~~~gd~~~~l~~~~ 188 (279)
++|.-||+|........+-+- +.+.+|+++|.+++.++..++... +.++ ..+.++. .|..+.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t-~~~~~~----- 75 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFS-TDVEKH----- 75 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEE-cCHHHH-----
Confidence 357778776544443322221 113679999999998776543210 0010 0012221 111111
Q ss_pred hCCCCCcEEEEEEeCC---------------ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645 189 LNGEASSYDFAFVDAE---------------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK 235 (279)
Q Consensus 189 ~~~~~~~fDlI~id~~---------------~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~ 235 (279)
-..-|++|+..+ ........+.+.+.|++|-++|+......|.
T Consensus 76 ----i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gt 133 (473)
T PLN02353 76 ----VAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (473)
T ss_pred ----HhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCCh
Confidence 134677776421 1134566777788999999999999988886
No 360
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=89.60 E-value=1.4 Score=39.31 Aligned_cols=87 Identities=15% Similarity=0.139 Sum_probs=53.1
Q ss_pred CCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 119 GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 119 ~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
++++||-+|+| .|..+..+++..+ ...|+++|.+++.++.+++. . ++ |..+. . ...+|
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~---~-----~~g~D 202 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATGY----E------VL--DPEKD---P-----RRDYR 202 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhhc----c------cc--Chhhc---c-----CCCCC
Confidence 46688888875 3556666777654 23477788888766555431 1 11 11110 0 35689
Q ss_pred EEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645 198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229 (279)
Q Consensus 198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd 229 (279)
+||-.... ...++.+.++|++||.+++-.
T Consensus 203 vvid~~G~---~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 203 AIYDASGD---PSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred EEEECCCC---HHHHHHHHHhhhcCcEEEEEe
Confidence 88754332 235677889999999999643
No 361
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=89.56 E-value=5.1 Score=35.79 Aligned_cols=102 Identities=18% Similarity=0.303 Sum_probs=62.0
Q ss_pred HHhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645 114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (279)
Q Consensus 114 l~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~ 192 (279)
.....++.+||-.|+|. |..+..+++.. +.+++++..+++..+.+++ .+...-+.....+..+.+.... .
T Consensus 154 ~~~l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~---~ 224 (337)
T cd08261 154 RAGVTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELT---D 224 (337)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHh---C
Confidence 34455677999998763 66677778775 4789999888877766543 2332212222223323332221 1
Q ss_pred CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
...+|+++-.... ...+..+.+.|+++|.++.
T Consensus 225 ~~~vd~vld~~g~---~~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 225 GEGADVVIDATGN---PASMEEAVELVAHGGRVVL 256 (337)
T ss_pred CCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEE
Confidence 3468998864322 2356777888999998875
No 362
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=89.33 E-value=2 Score=34.40 Aligned_cols=95 Identities=17% Similarity=0.199 Sum_probs=55.8
Q ss_pred EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh------CCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA------GVSHKVKIKHGLAADSLKALILNGEASS 195 (279)
Q Consensus 122 ~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~------g~~~~v~~~~gd~~~~l~~~~~~~~~~~ 195 (279)
+|.-||+|.+..++...-... +.+|+....+++.++..++.-... .+..++.+ ..|..+.+ ..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~---------~~ 69 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-GHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL---------ED 69 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-TEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH---------TT
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh---------Cc
Confidence 355677766555444322222 358999999987776655432210 11123333 23333222 45
Q ss_pred EEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 196 fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
-|+|++..+.....++++.+.+.++++-.+++
T Consensus 70 ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 70 ADIIIIAVPSQAHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp -SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred ccEEEecccHHHHHHHHHHHhhccCCCCEEEE
Confidence 69999988888888999999999988877775
No 363
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=89.23 E-value=3.2 Score=38.59 Aligned_cols=103 Identities=15% Similarity=0.214 Sum_probs=57.2
Q ss_pred EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHH---hCC-----CCcEEEEEcChhhHHHHHHhCCCC
Q 023645 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER---AGV-----SHKVKIKHGLAADSLKALILNGEA 193 (279)
Q Consensus 122 ~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~---~g~-----~~~v~~~~gd~~~~l~~~~~~~~~ 193 (279)
+|--||. |+.+..++..+..+.+|+++|++++.++..++.... .++ ....++....- .... .
T Consensus 2 kI~VIGl--GyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~---~~~~-----~ 71 (388)
T PRK15057 2 KITISGT--GYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLD---KNEA-----Y 71 (388)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecc---hhhh-----h
Confidence 3445555 555555554444356899999999998777652110 000 01112221100 0111 1
Q ss_pred CcEEEEEEeCCc-----------cchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645 194 SSYDFAFVDAEK-----------RMYQEYFELLLQLIRVGGIIVIDNVLWHGK 235 (279)
Q Consensus 194 ~~fDlI~id~~~-----------~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~ 235 (279)
..-|+||+..+. .......+.+.+ +++|.++|......+|.
T Consensus 72 ~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgt 123 (388)
T PRK15057 72 RDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGF 123 (388)
T ss_pred cCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCch
Confidence 456888875431 223445566666 68998888888888886
No 364
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=89.20 E-value=3.7 Score=38.50 Aligned_cols=88 Identities=10% Similarity=0.074 Sum_probs=56.3
Q ss_pred cCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 118 ~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
..+++|+-+|+|. |......++.. +++|+.+|.++...+.|++ .|. +.. +.. .. -...
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~----~G~----~~~--~~~----e~-----v~~a 258 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAM----EGY----EVM--TME----EA-----VKEG 258 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHh----cCC----EEc--cHH----HH-----HcCC
Confidence 4678999999984 54555555655 4689999999987766654 243 211 111 11 1357
Q ss_pred EEEEEeCCccchHHHHHH-HHccCCCCcEEEEeC
Q 023645 197 DFAFVDAEKRMYQEYFEL-LLQLIRVGGIIVIDN 229 (279)
Q Consensus 197 DlI~id~~~~~~~~~l~~-~~~~Lk~gG~lv~dd 229 (279)
|+||..... ...+.. ....+|+||+++.-.
T Consensus 259 DVVI~atG~---~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 259 DIFVTTTGN---KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CEEEECCCC---HHHHHHHHHhcCCCCcEEEEeC
Confidence 988865432 234544 478999999997644
No 365
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=89.08 E-value=3.8 Score=38.10 Aligned_cols=103 Identities=18% Similarity=0.195 Sum_probs=60.1
Q ss_pred hcCCCEEEEEcC-c-cCHHHHHHHHHCCCC-CEEEEEeCChhHHHHHHHHHHHh----CCCCcEEEEE----cChhhHHH
Q 023645 117 ILGAQRCIEVGV-Y-TGYSSLAIALVLPES-GCLVACERDARSLEVAKKYYERA----GVSHKVKIKH----GLAADSLK 185 (279)
Q Consensus 117 ~~~~~~VLEiG~-G-~G~~t~~la~~~~~~-~~v~~iD~s~~~~~~a~~~~~~~----g~~~~v~~~~----gd~~~~l~ 185 (279)
..++.+|+=+|+ | .|..+..+++....+ .+|+++|.+++..+.+++.+... |.. ..++. .+..+.+.
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~--~~~i~~~~~~~~~~~v~ 250 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIE--LLYVNPATIDDLHATLM 250 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCce--EEEECCCccccHHHHHH
Confidence 345678888873 3 566666677765312 37999999999998888753211 211 11221 12222222
Q ss_pred HHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 186 ALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 186 ~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
.+. +...+|+||..... ...+....+.++++|.+++
T Consensus 251 ~~t---~g~g~D~vid~~g~---~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 251 ELT---GGQGFDDVFVFVPV---PELVEEADTLLAPDGCLNF 286 (410)
T ss_pred HHh---CCCCCCEEEEcCCC---HHHHHHHHHHhccCCeEEE
Confidence 221 13469988865432 2456778889998875543
No 366
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=88.90 E-value=2.5 Score=34.39 Aligned_cols=100 Identities=21% Similarity=0.184 Sum_probs=58.8
Q ss_pred EcCccCHHHHHHHHHCCCCCEEEE--EeCChhHHHH---HHHHHHHhCCCCcEEE-EEcChhhHHHHHHhCCCCCcEEEE
Q 023645 126 VGVYTGYSSLAIALVLPESGCLVA--CERDARSLEV---AKKYYERAGVSHKVKI-KHGLAADSLKALILNGEASSYDFA 199 (279)
Q Consensus 126 iG~G~G~~t~~la~~~~~~~~v~~--iD~s~~~~~~---a~~~~~~~g~~~~v~~-~~gd~~~~l~~~~~~~~~~~fDlI 199 (279)
+|=|.=++++.+++..+...++++ .|..++..+. +.++++..... .+++ ..-|+...-..... ....||.|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~-g~~V~~~VDat~l~~~~~~--~~~~FDrI 79 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELREL-GVTVLHGVDATKLHKHFRL--KNQRFDRI 79 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhc-CCccccCCCCCcccccccc--cCCcCCEE
Confidence 566777788888888764456555 4444433322 33555544222 2333 33455433222100 15789999
Q ss_pred EEeCCccc----------------hHHHHHHHHccCCCCcEEEEe
Q 023645 200 FVDAEKRM----------------YQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 200 ~id~~~~~----------------~~~~l~~~~~~Lk~gG~lv~d 228 (279)
+.+.++.. ...+|+.+.++|+++|.|.+.
T Consensus 80 iFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT 124 (166)
T PF10354_consen 80 IFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT 124 (166)
T ss_pred EEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 98765322 345788888999999999884
No 367
>PRK08114 cystathionine beta-lyase; Provisional
Probab=88.60 E-value=8.3 Score=35.97 Aligned_cols=129 Identities=15% Similarity=0.204 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCC-hhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645 104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERD-ARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (279)
Q Consensus 104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s-~~~~~~a~~~~~~~g~~~~v~~~~gd~~~ 182 (279)
+|....+=..++.+-.+...+-..+|++.....+...+.++.+|++.+.. .......++.+++.|.+ +.++...-.+
T Consensus 61 nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~--v~~vd~~d~~ 138 (395)
T PRK08114 61 TLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVT--TTWFDPLIGA 138 (395)
T ss_pred ChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcE--EEEECCCCHH
Confidence 45555555556666667788888998888776665556656787775432 34455556666666653 5555322223
Q ss_pred HHHHHHhCCCCCcEEEEEEeCCc--cchHHHHHHHHccCC---CCcEEEEeCCCCCCcccC
Q 023645 183 SLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLIR---VGGIIVIDNVLWHGKVAD 238 (279)
Q Consensus 183 ~l~~~~~~~~~~~fDlI~id~~~--~~~~~~l~~~~~~Lk---~gG~lv~dd~~~~g~~~~ 238 (279)
.+.... ...-.+|++.... ......++.+.++.+ +|-.+++||+...+...+
T Consensus 139 ~l~~~l----~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~ 195 (395)
T PRK08114 139 DIAKLI----QPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFK 195 (395)
T ss_pred HHHHhc----CCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccccC
Confidence 333332 2345788887642 111122333433333 356888999876665433
No 368
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=88.40 E-value=5.3 Score=30.39 Aligned_cols=89 Identities=9% Similarity=0.017 Sum_probs=55.0
Q ss_pred HHHhhcCCCEEEEEcCccCH-HHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC
Q 023645 113 MLVQILGAQRCIEVGVYTGY-SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG 191 (279)
Q Consensus 113 ~l~~~~~~~~VLEiG~G~G~-~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~ 191 (279)
.++......+|+|+|.|.=. .+..+++. +..++++|+++. .++ ..++++..|..+---.+
T Consensus 7 ~iAre~~~gkVvEVGiG~~~~VA~~L~e~---g~dv~atDI~~~----------~a~--~g~~~v~DDitnP~~~i---- 67 (129)
T COG1255 7 YIARENARGKVVEVGIGFFLDVAKRLAER---GFDVLATDINEK----------TAP--EGLRFVVDDITNPNISI---- 67 (129)
T ss_pred HHHHHhcCCcEEEEccchHHHHHHHHHHc---CCcEEEEecccc----------cCc--ccceEEEccCCCccHHH----
Confidence 34445566799999987543 23333432 478999999986 112 23788888887532222
Q ss_pred CCCcEEEEEEeCCccchHHHHHHHHccCCC
Q 023645 192 EASSYDFAFVDAEKRMYQEYFELLLQLIRV 221 (279)
Q Consensus 192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~ 221 (279)
-...|+|+.--+......++-.+.+.++-
T Consensus 68 -Y~~A~lIYSiRpppEl~~~ildva~aVga 96 (129)
T COG1255 68 -YEGADLIYSIRPPPELQSAILDVAKAVGA 96 (129)
T ss_pred -hhCccceeecCCCHHHHHHHHHHHHhhCC
Confidence 25678998766655555555555554433
No 369
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=88.39 E-value=9.5 Score=35.38 Aligned_cols=106 Identities=17% Similarity=0.234 Sum_probs=60.1
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE-cChhhHHHHHHhCCCC
Q 023645 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNGEA 193 (279)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~-gd~~~~l~~~~~~~~~ 193 (279)
...++.+||-.|+| .|..+..+++..+ ...++.+|.+++..+.+++ .|.. .+.... .+..+.+..+. ..
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~----~Ga~-~v~~~~~~~~~~~v~~~~---~~ 252 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLLG-AAVVIVGDLNPARLAQARS----FGCE-TVDLSKDATLPEQIEQIL---GE 252 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHH----cCCe-EEecCCcccHHHHHHHHc---CC
Confidence 34566788777764 2444455666653 2346677888877777665 3432 111111 12222232221 12
Q ss_pred CcEEEEEEeCCcc-----------chHHHHHHHHccCCCCcEEEEeCC
Q 023645 194 SSYDFAFVDAEKR-----------MYQEYFELLLQLIRVGGIIVIDNV 230 (279)
Q Consensus 194 ~~fDlI~id~~~~-----------~~~~~l~~~~~~Lk~gG~lv~dd~ 230 (279)
..+|++|--.... .....++.+..++++||.+++-.+
T Consensus 253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 253 PEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 4689887543322 113468888999999999998554
No 370
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=88.25 E-value=6.2 Score=35.92 Aligned_cols=104 Identities=16% Similarity=0.231 Sum_probs=58.6
Q ss_pred HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc--ChhhHHHHHHhCC
Q 023645 115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG--LAADSLKALILNG 191 (279)
Q Consensus 115 ~~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g--d~~~~l~~~~~~~ 191 (279)
....++.+||-.|+| .|..+..+++..+ ..+|++++.+++..+.+++ .|...-+..... +..+.+..+.
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~--- 254 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMT--- 254 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHh---
Confidence 345667899988864 2334455666653 2389999999987776644 343221211110 1112222221
Q ss_pred CCCcEEEEEEeCCccchHHHHHHHHccCCCC-cEEEEeCC
Q 023645 192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV 230 (279)
Q Consensus 192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~g-G~lv~dd~ 230 (279)
.+.+|+++-.... ...+..+...+++| |.+++-..
T Consensus 255 -~~~~d~vid~~G~---~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 255 -GGGVDYSFECTGN---IDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred -CCCCCEEEECCCC---hHHHHHHHHHhhcCCCEEEEECc
Confidence 2368977743322 24566677888996 88886443
No 371
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.16 E-value=9.2 Score=32.09 Aligned_cols=106 Identities=16% Similarity=0.134 Sum_probs=61.0
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCC--CC
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EA 193 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~--~~ 193 (279)
.+++||-.|++ |..+..+++.+. .+.+|++++.+++......+..... .++.++.+|..+. +....++- .-
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 35689999975 666666666552 3579999999887665544444322 2478888887642 11111100 02
Q ss_pred CcEEEEEEeCCcc------c--------------hHHHHHHHHccCCCCcEEEEe
Q 023645 194 SSYDFAFVDAEKR------M--------------YQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 194 ~~fDlI~id~~~~------~--------------~~~~l~~~~~~Lk~gG~lv~d 228 (279)
+.+|.++...... . ....++.+.+.++++|.+++-
T Consensus 80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ 134 (238)
T PRK05786 80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLV 134 (238)
T ss_pred CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEE
Confidence 4578887665311 0 112244555677778866653
No 372
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=88.13 E-value=1.3 Score=31.89 Aligned_cols=85 Identities=15% Similarity=0.195 Sum_probs=52.4
Q ss_pred EEEEcCccCHHHHHHHHHCCC-C---CEEE-EEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 123 CIEVGVYTGYSSLAIALVLPE-S---GCLV-ACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 123 VLEiG~G~G~~t~~la~~~~~-~---~~v~-~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
|-=||+ |..+..+++.+-. + .+|+ ..+.+++..+...+.+ + +.+...+..+.. ..-|
T Consensus 2 I~iIG~--G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~---~----~~~~~~~~~~~~---------~~ad 63 (96)
T PF03807_consen 2 IGIIGA--GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY---G----VQATADDNEEAA---------QEAD 63 (96)
T ss_dssp EEEEST--SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC---T----TEEESEEHHHHH---------HHTS
T ss_pred EEEECC--CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh---c----cccccCChHHhh---------ccCC
Confidence 344555 6667666665422 2 5888 4499998765554433 2 344443444443 3469
Q ss_pred EEEEeCCccchHHHHHHHHccCCCCcEEE
Q 023645 198 FAFVDAEKRMYQEYFELLLQLIRVGGIIV 226 (279)
Q Consensus 198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv 226 (279)
+||+...+....+.++.+ ..+.++..++
T Consensus 64 vvilav~p~~~~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 64 VVILAVKPQQLPEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp EEEE-S-GGGHHHHHHHH-HHHHTTSEEE
T ss_pred EEEEEECHHHHHHHHHHH-hhccCCCEEE
Confidence 999999888888988888 6666766554
No 373
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=88.01 E-value=5.9 Score=35.59 Aligned_cols=103 Identities=19% Similarity=0.287 Sum_probs=59.5
Q ss_pred HHhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCE-EEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh---hhHHHHHH
Q 023645 114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLA---ADSLKALI 188 (279)
Q Consensus 114 l~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~---~~~l~~~~ 188 (279)
.....++.+||-.|+|. |..+..+++..+ .+ |++++.+++..+.+++ .|...-+.....+. .+.+....
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G--~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~ 230 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFG--ATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL 230 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh
Confidence 34456677888877654 556666777654 55 8888888877666644 23322112111121 11122221
Q ss_pred hCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645 189 LNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 189 ~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
....+|+|+-..... ..+....+.|+++|.++.-
T Consensus 231 ---~~~~~d~vld~~g~~---~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 231 ---GGKGPDVVIECTGAE---SCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred ---CCCCCCEEEECCCCH---HHHHHHHHHhhcCCEEEEE
Confidence 134699888543321 2567778899999998853
No 374
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=87.93 E-value=7 Score=35.35 Aligned_cols=101 Identities=16% Similarity=0.169 Sum_probs=55.4
Q ss_pred CCCEEEEEcCc-cCHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 119 GAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 119 ~~~~VLEiG~G-~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
++.+||=.|+| .|..+..+++.. +. +|++++.+++..+.++ ..|...-+.....+..+....+........+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~ 250 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLA--GARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDITGGRGA 250 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHhCCCCC
Confidence 56788888754 233445556665 35 8999998887665553 3354321122111111111111111113469
Q ss_pred EEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
|+||-.... ...+....+.|+++|.++.-
T Consensus 251 d~vid~~g~---~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 251 DVVIEASGH---PAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred cEEEECCCC---hHHHHHHHHHhccCCEEEEE
Confidence 988854322 23566778899999999863
No 375
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=87.85 E-value=7.4 Score=35.07 Aligned_cols=103 Identities=14% Similarity=0.136 Sum_probs=60.3
Q ss_pred HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645 115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (279)
Q Consensus 115 ~~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~ 192 (279)
....++.+||=.|+| .|..+..+++.. +. +|++++.+++..+.+++ .|...-+.....+..+.+.... .
T Consensus 168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~---~ 238 (351)
T cd08233 168 SGFKPGDTALVLGAGPIGLLTILALKAA--GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLT---G 238 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHh---C
Confidence 344567788888753 233445556655 35 89999998887776644 2432212222233333332221 1
Q ss_pred CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645 193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229 (279)
Q Consensus 193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd 229 (279)
...+|+|+-.... ...++.+.+.|+++|.++.=.
T Consensus 239 ~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 239 GGGVDVSFDCAGV---QATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred CCCCCEEEECCCC---HHHHHHHHHhccCCCEEEEEc
Confidence 2459998854332 235677888999999988643
No 376
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=87.75 E-value=7.5 Score=35.41 Aligned_cols=102 Identities=16% Similarity=0.292 Sum_probs=58.8
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc--ChhhHHHHHHhCC
Q 023645 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHG--LAADSLKALILNG 191 (279)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g--d~~~~l~~~~~~~ 191 (279)
...++.+||-+|+| .|..+..+++..+ . +|+++|.+++..+.+++ .|...-+..... +..+.+..+.
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G--~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~--- 251 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIAG--ASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMT--- 251 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHh---
Confidence 44567899888864 2334455666653 5 79999999888777644 343221121111 1122222221
Q ss_pred CCCcEEEEEEeCCccchHHHHHHHHccCCCC-cEEEEeCC
Q 023645 192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV 230 (279)
Q Consensus 192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~g-G~lv~dd~ 230 (279)
...+|+||-.... ...+....+.++++ |.++.-..
T Consensus 252 -~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 252 -GGGVDYSFECTGN---ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred -CCCCCEEEECCCC---hHHHHHHHHhcccCCCEEEEEcC
Confidence 2468988843332 24567788889885 88876443
No 377
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=87.69 E-value=3.6 Score=38.14 Aligned_cols=92 Identities=13% Similarity=0.121 Sum_probs=61.1
Q ss_pred EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCc-EEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK-VKIKHGLAADSLKALILNGEASSYDFAF 200 (279)
Q Consensus 122 ~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~-v~~~~gd~~~~l~~~~~~~~~~~fDlI~ 200 (279)
+||-++=..|..+.+++..-+ +.+-=+--.....++|++.+|+... +++. +..+.+ .+.+|+|+
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~-----~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~--~~~~~~--------~~~~d~vl 111 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKP-----YSIGDSYISELATRENLRLNGIDESSVKFL--DSTADY--------PQQPGVVL 111 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCC-----CeeehHHHHHHHHHHHHHHcCCCcccceee--cccccc--------cCCCCEEE
Confidence 799999999999999985322 2331112223445788888887543 4444 222222 35699999
Q ss_pred EeCCcc--chHHHHHHHHccCCCCcEEEEe
Q 023645 201 VDAEKR--MYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 201 id~~~~--~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
+-.++. .....+..+.+.|.+|+.+++-
T Consensus 112 ~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g 141 (378)
T PRK15001 112 IKVPKTLALLEQQLRALRKVVTSDTRIIAG 141 (378)
T ss_pred EEeCCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 887744 3455677788999999998763
No 378
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=87.69 E-value=2.7 Score=39.04 Aligned_cols=83 Identities=19% Similarity=0.170 Sum_probs=50.6
Q ss_pred CEEEEEcCccCHHHHHHHHHCCC--CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCCCCCcE
Q 023645 121 QRCIEVGVYTGYSSLAIALVLPE--SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSY 196 (279)
Q Consensus 121 ~~VLEiG~G~G~~t~~la~~~~~--~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~~~~~f 196 (279)
++||-|||| ..+...+..+.. ..+|+..|.+++..+.+..... .+++..+-|+.+. +..++ ..+
T Consensus 2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li-----~~~ 69 (389)
T COG1748 2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALI-----KDF 69 (389)
T ss_pred CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHH-----hcC
Confidence 479999994 444444443221 3699999999887766655432 2578888887653 43442 456
Q ss_pred EEEEEeCCccchHHHHHHH
Q 023645 197 DFAFVDAEKRMYQEYFELL 215 (279)
Q Consensus 197 DlI~id~~~~~~~~~l~~~ 215 (279)
|+|+.-.+.......++.+
T Consensus 70 d~VIn~~p~~~~~~i~ka~ 88 (389)
T COG1748 70 DLVINAAPPFVDLTILKAC 88 (389)
T ss_pred CEEEEeCCchhhHHHHHHH
Confidence 9998765543333333333
No 379
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=87.61 E-value=6.8 Score=35.71 Aligned_cols=80 Identities=15% Similarity=0.143 Sum_probs=46.7
Q ss_pred CCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCCh---------------------hHHHHHHHHHHHhCCCCcEEEE
Q 023645 119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDA---------------------RSLEVAKKYYERAGVSHKVKIK 176 (279)
Q Consensus 119 ~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~---------------------~~~~~a~~~~~~~g~~~~v~~~ 176 (279)
...+||-||||. |......+...+ -++++.+|.+. ...+.+++.+++.+..-+++.+
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aG-vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAG-IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 456899999973 332222222222 35899999874 2345666777766554446666
Q ss_pred EcChh-hHHHHHHhCCCCCcEEEEEEeCC
Q 023645 177 HGLAA-DSLKALILNGEASSYDFAFVDAE 204 (279)
Q Consensus 177 ~gd~~-~~l~~~~~~~~~~~fDlI~id~~ 204 (279)
..+.. +.+..+ -..+|+|+...+
T Consensus 102 ~~~~~~~~~~~~-----~~~~DlVid~~D 125 (338)
T PRK12475 102 VTDVTVEELEEL-----VKEVDLIIDATD 125 (338)
T ss_pred eccCCHHHHHHH-----hcCCCEEEEcCC
Confidence 65553 233333 356898886544
No 380
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=87.59 E-value=3.9 Score=36.54 Aligned_cols=94 Identities=21% Similarity=0.273 Sum_probs=56.5
Q ss_pred CCCEEEEEcCcc-CHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 119 GAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 119 ~~~~VLEiG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
++.+||-.|+|. |..+..+++..+ . ++++++.+++..+.+++ .+.. .++..+-.. +..... ..+.+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G--~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~-~~~~~~--~~~~v 232 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAG--AAEIVATDLADAPLAVARA----MGAD---ETVNLARDP-LAAYAA--DKGDF 232 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchh-hhhhhc--cCCCc
Confidence 677888888764 556666777653 4 78999988877765544 2332 122111111 111111 12459
Q ss_pred EEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
|+++-.... ...++.+.+.|+++|.++.
T Consensus 233 d~vld~~g~---~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 233 DVVFEASGA---PAALASALRVVRPGGTVVQ 260 (339)
T ss_pred cEEEECCCC---HHHHHHHHHHHhcCCEEEE
Confidence 998854332 2356778899999999885
No 381
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=87.57 E-value=11 Score=35.15 Aligned_cols=125 Identities=17% Similarity=0.225 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCC-hhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645 104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERD-ARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (279)
Q Consensus 104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s-~~~~~~a~~~~~~~g~~~~v~~~~gd~~~ 182 (279)
+|....+-..++.+..+..++=..+|.+..+..+...+.++.+|+..+.- .......++.+...|+. +.++..+-.+
T Consensus 54 nPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~--v~~~d~~d~~ 131 (386)
T PF01053_consen 54 NPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVE--VTFVDPTDLE 131 (386)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSE--EEEESTTSHH
T ss_pred cccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcE--EEEeCchhHH
Confidence 45566666666666777888889999888877777777767788777643 33455566666666653 5555443334
Q ss_pred HHHHHHhCCCCCcEEEEEEeCC--ccchHHHHHHHHccCCCC--cEEEEeCCCCCC
Q 023645 183 SLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVG--GIIVIDNVLWHG 234 (279)
Q Consensus 183 ~l~~~~~~~~~~~fDlI~id~~--~~~~~~~l~~~~~~Lk~g--G~lv~dd~~~~g 234 (279)
.+.... ....++||+..+ +......++.+.++.+.- -.+++||.+-..
T Consensus 132 ~l~~~l----~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 132 ALEAAL----RPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp HHHHHH----CTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred HHHhhc----cccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence 444433 468899999765 222233455555555554 477788876443
No 382
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=87.37 E-value=7.2 Score=32.65 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=43.7
Q ss_pred CCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCCh-------------------hHHHHHHHHHHHhCCCCcEEEEEc
Q 023645 119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDA-------------------RSLEVAKKYYERAGVSHKVKIKHG 178 (279)
Q Consensus 119 ~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~-------------------~~~~~a~~~~~~~g~~~~v~~~~g 178 (279)
...+|+=+|||. |......+...+ -++++.+|.+. ...+.+.+.++..+..-+++.+..
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 98 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE 98 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence 456899999973 333333222222 36899999872 334555666665443333444443
Q ss_pred Chhh-HHHHHHhCCCCCcEEEEEEeCC
Q 023645 179 LAAD-SLKALILNGEASSYDFAFVDAE 204 (279)
Q Consensus 179 d~~~-~l~~~~~~~~~~~fDlI~id~~ 204 (279)
...+ .+... -..+|+|+.-.+
T Consensus 99 ~i~~~~~~~~-----~~~~D~Vi~~~d 120 (202)
T TIGR02356 99 RVTAENLELL-----INNVDLVLDCTD 120 (202)
T ss_pred cCCHHHHHHH-----HhCCCEEEECCC
Confidence 3322 22222 257999886544
No 383
>PRK06940 short chain dehydrogenase; Provisional
Probab=87.30 E-value=7.3 Score=33.94 Aligned_cols=80 Identities=20% Similarity=0.167 Sum_probs=50.2
Q ss_pred CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhC-CCCCcEE
Q 023645 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN-GEASSYD 197 (279)
Q Consensus 121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~-~~~~~fD 197 (279)
+.+|=.|+ |..+..+++.+..+.+|+.++.+++..+...+.++..+ .++.++.+|..+. +..+... .+.+.+|
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 35565564 57888888887667899999998876655555454333 3577788887542 2222111 0125789
Q ss_pred EEEEeCC
Q 023645 198 FAFVDAE 204 (279)
Q Consensus 198 lI~id~~ 204 (279)
.++..+.
T Consensus 79 ~li~nAG 85 (275)
T PRK06940 79 GLVHTAG 85 (275)
T ss_pred EEEECCC
Confidence 9987654
No 384
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.28 E-value=6.5 Score=35.42 Aligned_cols=109 Identities=15% Similarity=0.175 Sum_probs=65.7
Q ss_pred HHhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEE--EcChhhHHHHHHhC
Q 023645 114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK--HGLAADSLKALILN 190 (279)
Q Consensus 114 l~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~--~gd~~~~l~~~~~~ 190 (279)
.++..++.+|.-+|+|. |.....-+++.+ .+++++||++++..+.|++. |..+-+... ...+.+.+.++-
T Consensus 187 ~Akv~~GstvAVfGLG~VGLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~f----GaTe~iNp~d~~~~i~evi~EmT-- 259 (375)
T KOG0022|consen 187 TAKVEPGSTVAVFGLGGVGLAVAMGAKAAG-ASRIIGVDINPDKFEKAKEF----GATEFINPKDLKKPIQEVIIEMT-- 259 (375)
T ss_pred hcccCCCCEEEEEecchHHHHHHHhHHhcC-cccEEEEecCHHHHHHHHhc----CcceecChhhccccHHHHHHHHh--
Confidence 44566788999999875 434444455444 57999999999999888763 333222211 123445555443
Q ss_pred CCCCcEEEEEEeCCccchHHHHHHHHccCCCC-cEEEEeCCCCCC
Q 023645 191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNVLWHG 234 (279)
Q Consensus 191 ~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~g-G~lv~dd~~~~g 234 (279)
++.+|+-|--.. ..+.+.+++...++| |.-++=.+.-.|
T Consensus 260 --dgGvDysfEc~G---~~~~m~~al~s~h~GwG~sv~iGv~~~~ 299 (375)
T KOG0022|consen 260 --DGGVDYSFECIG---NVSTMRAALESCHKGWGKSVVIGVAAAG 299 (375)
T ss_pred --cCCceEEEEecC---CHHHHHHHHHHhhcCCCeEEEEEecCCC
Confidence 577888874332 224455666666777 776664444333
No 385
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=87.15 E-value=8.4 Score=34.52 Aligned_cols=101 Identities=26% Similarity=0.349 Sum_probs=56.8
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (279)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~ 194 (279)
...++.+||=.|+| .|..+..+++..+ ..++++++.+++....+++ .|...-+.....+....+..+. ...
T Consensus 163 ~~~~g~~vlI~g~g~~g~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~---~~~ 234 (345)
T cd08286 163 KVKPGDTVAIVGAGPVGLAALLTAQLYS-PSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELT---DGR 234 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHh---CCC
Confidence 34456777777653 2333444566543 2578889988877665553 3443223333233322222221 134
Q ss_pred cEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
.+|+|+-... ....++.+.+.|+++|.++.
T Consensus 235 ~~d~vld~~g---~~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 235 GVDVVIEAVG---IPATFELCQELVAPGGHIAN 264 (345)
T ss_pred CCCEEEECCC---CHHHHHHHHHhccCCcEEEE
Confidence 6998874322 12357778899999999885
No 386
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=86.89 E-value=0.52 Score=35.39 Aligned_cols=33 Identities=9% Similarity=-0.035 Sum_probs=25.1
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCCh
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDA 154 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~ 154 (279)
+....+|||||+|.....|.+. +.+=.|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE---GYPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC---CCCcccccccc
Confidence 3558999999999988777654 44668888754
No 387
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=86.84 E-value=7.3 Score=35.48 Aligned_cols=101 Identities=15% Similarity=0.208 Sum_probs=58.9
Q ss_pred hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645 116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (279)
Q Consensus 116 ~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~ 194 (279)
...++.+||-.|+|. |..+..+++..+ ..++++++.+++..+.+++ .|...-+.....+..+.+.... ..
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~----~g~~~~i~~~~~~~~~~v~~~~----~~ 253 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAKE----LGATHVINPKEEDLVAAIREIT----GG 253 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCcEEecCCCcCHHHHHHHHh----CC
Confidence 345677888887643 555666777664 2369999999877766544 3332111111112222222221 24
Q ss_pred cEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645 195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
.+|+|+-..... ..+..+.+.|+++|.++.-
T Consensus 254 ~~d~vld~~g~~---~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 254 GVDYALDTTGVP---AVIEQAVDALAPRGTLALV 284 (365)
T ss_pred CCcEEEECCCCc---HHHHHHHHHhccCCEEEEe
Confidence 689887543322 3467788889999988863
No 388
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=86.45 E-value=6.9 Score=32.66 Aligned_cols=97 Identities=18% Similarity=0.202 Sum_probs=56.7
Q ss_pred HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645 115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (279)
Q Consensus 115 ~~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~ 193 (279)
.....+++||-+|++ +|..+ ++.+.+.++|+.+|++|.+-.. +.+.|+|..+ +..+ .
T Consensus 40 ~~~~E~~~vli~G~YltG~~~---a~~Ls~~~~vtv~Di~p~~r~~---------lp~~v~Fr~~-----~~~~-----~ 97 (254)
T COG4017 40 LEGEEFKEVLIFGVYLTGNYT---AQMLSKADKVTVVDIHPFMRGF---------LPNNVKFRNL-----LKFI-----R 97 (254)
T ss_pred hcccCcceEEEEEeeehhHHH---HHHhcccceEEEecCCHHHHhc---------CCCCccHhhh-----cCCC-----C
Confidence 344567899999987 45444 4444446899999999865322 3344666533 2222 5
Q ss_pred CcEEEEEEeCCccc-hHHHHHHHHccCCCCcEEEEeCCCCCCcccCcc
Q 023645 194 SSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVIDNVLWHGKVADQM 240 (279)
Q Consensus 194 ~~fDlI~id~~~~~-~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~ 240 (279)
+.+|+|+--..... .+++ ++.+.|+ ++++.|.. |.+.|+.
T Consensus 98 G~~DlivDlTGlGG~~Pe~----L~~fnp~-vfiVEdP~--gn~~D~~ 138 (254)
T COG4017 98 GEVDLIVDLTGLGGIEPEF----LAKFNPK-VFIVEDPK--GNVFDVD 138 (254)
T ss_pred CceeEEEeccccCCCCHHH----HhccCCc-eEEEECCC--CCCCccc
Confidence 88999874333222 2233 3445664 66676654 4444443
No 389
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=86.34 E-value=2.3 Score=38.03 Aligned_cols=97 Identities=11% Similarity=0.043 Sum_probs=53.8
Q ss_pred CEEEEEcCcc--CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE-cChhhHHHHHHhCCCCCcEE
Q 023645 121 QRCIEVGVYT--GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNGEASSYD 197 (279)
Q Consensus 121 ~~VLEiG~G~--G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~-gd~~~~l~~~~~~~~~~~fD 197 (279)
++|+=+|+|. |+++..|++. +..|+.++.+++.++..++ ..|+ .+.. +...............+.||
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~---G~~V~lv~r~~~~~~~i~~---~~Gl----~i~~~g~~~~~~~~~~~~~~~~~~D 72 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA---GLPVRLILRDRQRLAAYQQ---AGGL----TLVEQGQASLYAIPAETADAAEPIH 72 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC---CCCeEEEEechHHHHHHhh---cCCe----EEeeCCcceeeccCCCCcccccccC
Confidence 3788899873 3344445543 4579999998755544332 1122 1110 10000000000000135899
Q ss_pred EEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
+||+-.-..+..+.++.+.+.+.++..++.
T Consensus 73 ~viv~vK~~~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 73 RLLLACKAYDAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred EEEEECCHHhHHHHHHHHHhhCCCCCEEEE
Confidence 999876655667788889999999886643
No 390
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=86.29 E-value=8.4 Score=32.84 Aligned_cols=80 Identities=15% Similarity=0.160 Sum_probs=45.3
Q ss_pred CCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCC-------------------hhHHHHHHHHHHHhCCCCcEEEEEc
Q 023645 119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERD-------------------ARSLEVAKKYYERAGVSHKVKIKHG 178 (279)
Q Consensus 119 ~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s-------------------~~~~~~a~~~~~~~g~~~~v~~~~g 178 (279)
...+|+=+|||. |......+...+ -++++.+|.+ ....+.+++.+++.+..-+++.+..
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~ 98 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE 98 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence 356899999973 333333222233 3588888543 3345667777776654434565554
Q ss_pred Chh-hHHHHHHhCCCCCcEEEEEEeCC
Q 023645 179 LAA-DSLKALILNGEASSYDFAFVDAE 204 (279)
Q Consensus 179 d~~-~~l~~~~~~~~~~~fDlI~id~~ 204 (279)
... +.+..+ -..+|+|+...+
T Consensus 99 ~i~~~~~~~~-----~~~~DvVi~~~d 120 (228)
T cd00757 99 RLDAENAEEL-----IAGYDLVLDCTD 120 (228)
T ss_pred eeCHHHHHHH-----HhCCCEEEEcCC
Confidence 442 223333 256999987654
No 391
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=86.28 E-value=13 Score=33.40 Aligned_cols=96 Identities=17% Similarity=0.171 Sum_probs=53.6
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCC--CCCEEEEEeCChhHH-HHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLP--ESGCLVACERDARSL-EVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~--~~~~v~~iD~s~~~~-~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~ 194 (279)
..+++|+-+|+ |..+..+++.+. ...+|+.++.+++.. +.+++ .|. ... +..+ +... -.
T Consensus 176 l~~~~V~ViGa--G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~----~g~----~~~--~~~~-~~~~-----l~ 237 (311)
T cd05213 176 LKGKKVLVIGA--GEMGELAAKHLAAKGVAEITIANRTYERAEELAKE----LGG----NAV--PLDE-LLEL-----LN 237 (311)
T ss_pred ccCCEEEEECc--HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH----cCC----eEE--eHHH-HHHH-----Hh
Confidence 46789999998 555555444432 135799999988654 33332 232 222 1212 2222 24
Q ss_pred cEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645 195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 231 (279)
Q Consensus 195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~ 231 (279)
..|+||.-.+...+...+..+....+.++.+++|-..
T Consensus 238 ~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 238 EADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred cCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence 5799998766555434444444433346788887553
No 392
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=86.15 E-value=25 Score=32.77 Aligned_cols=102 Identities=15% Similarity=0.217 Sum_probs=59.4
Q ss_pred EEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHH------------HHHHhCCCCcEEEEEcChhhHHHHHH
Q 023645 122 RCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKK------------YYERAGVSHKVKIKHGLAADSLKALI 188 (279)
Q Consensus 122 ~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~------------~~~~~g~~~~v~~~~gd~~~~l~~~~ 188 (279)
+|--+|+| |.++..+-.+.. +..|+|+|++++.++..++ .++++..+.|+++. .|..+..
T Consensus 2 kI~viGtG--YVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fT-td~~~a~---- 74 (414)
T COG1004 2 KITVIGTG--YVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFT-TDYEEAV---- 74 (414)
T ss_pred ceEEECCc--hHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEE-cCHHHHH----
Confidence 45556664 444333322221 3689999999998877544 23332223344443 2222211
Q ss_pred hCCCCCcEEEEEEeCC----------ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645 189 LNGEASSYDFAFVDAE----------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK 235 (279)
Q Consensus 189 ~~~~~~~fDlI~id~~----------~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~ 235 (279)
...|++|+..+ ........+.+...++..-++|+......|.
T Consensus 75 -----~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt 126 (414)
T COG1004 75 -----KDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGT 126 (414)
T ss_pred -----hcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCc
Confidence 34578887532 2224556677778888888999988888776
No 393
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=85.89 E-value=1.7 Score=37.32 Aligned_cols=75 Identities=19% Similarity=0.221 Sum_probs=41.4
Q ss_pred ccCHHHHH--HHHHCC-CCCEEEEEeCChhHH--HHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeC
Q 023645 129 YTGYSSLA--IALVLP-ESGCLVACERDARSL--EVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA 203 (279)
Q Consensus 129 G~G~~t~~--la~~~~-~~~~v~~iD~s~~~~--~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~ 203 (279)
|.|-.|.. ++..+. .+.+|+-||-+|..- ++.+...+...+.+++.+...+-...+....+..+...||+|++|-
T Consensus 12 GaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~~~~~d~VlvDl 91 (231)
T PF07015_consen 12 GAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEAAEASGFDFVLVDL 91 (231)
T ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHHHHhcCCCEEEEeC
Confidence 55555544 444442 367999999998653 3322222222345566766655444444443322234699999984
No 394
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=85.87 E-value=1.6 Score=34.32 Aligned_cols=92 Identities=17% Similarity=0.230 Sum_probs=52.8
Q ss_pred EEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCC----C-cEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 124 IEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVS----H-KVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 124 LEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~----~-~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
+=+|+ |..+..++..+. .+.+|+.+..++ ..+. ++..|+. . ...+............ ..++|
T Consensus 2 ~I~G~--GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~D 69 (151)
T PF02558_consen 2 LIIGA--GAIGSLYAARLAQAGHDVTLVSRSP-RLEA----IKEQGLTITGPDGDETVQPPIVISAPSAD-----AGPYD 69 (151)
T ss_dssp EEEST--SHHHHHHHHHHHHTTCEEEEEESHH-HHHH----HHHHCEEEEETTEEEEEEEEEEESSHGHH-----HSTES
T ss_pred EEECc--CHHHHHHHHHHHHCCCceEEEEccc-cHHh----hhheeEEEEecccceecccccccCcchhc-----cCCCc
Confidence 44555 556666655541 257899999887 4433 2322321 0 1111111111111011 47899
Q ss_pred EEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
+||+-.-..+..+.++.+.+.+.++..+++
T Consensus 70 ~viv~vKa~~~~~~l~~l~~~~~~~t~iv~ 99 (151)
T PF02558_consen 70 LVIVAVKAYQLEQALQSLKPYLDPNTTIVS 99 (151)
T ss_dssp EEEE-SSGGGHHHHHHHHCTGEETTEEEEE
T ss_pred EEEEEecccchHHHHHHHhhccCCCcEEEE
Confidence 999987777778899999999999976664
No 395
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=85.75 E-value=19 Score=33.21 Aligned_cols=127 Identities=15% Similarity=0.179 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChh-HHHHHHHHHHHhCCCCcEEEEEcChhhH
Q 023645 105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHGLAADS 183 (279)
Q Consensus 105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~-~~~~a~~~~~~~g~~~~v~~~~gd~~~~ 183 (279)
|....+=..++.......++=..+|++.....+...+.++.+|+..+..-. ....+....+..|.. ++++..+..+.
T Consensus 50 Pt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~--v~~~d~~~~e~ 127 (377)
T TIGR01324 50 LTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVD--ITYYDPLIGED 127 (377)
T ss_pred ccHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcE--EEEECCCCHHH
Confidence 333333334444445556776777766666555544555678877665432 223333344444432 33332211123
Q ss_pred HHHHHhCCCCCcEEEEEEeCC--ccchHHHHHHHHccCCC-CcEEEEeCCCCCCccc
Q 023645 184 LKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVLWHGKVA 237 (279)
Q Consensus 184 l~~~~~~~~~~~fDlI~id~~--~~~~~~~l~~~~~~Lk~-gG~lv~dd~~~~g~~~ 237 (279)
+.... ..+..+|++..+ .......++.+.++.+. |..+++|++...|...
T Consensus 128 l~~~i----~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~ 180 (377)
T TIGR01324 128 IATLI----QPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLF 180 (377)
T ss_pred HHHhc----CCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccccc
Confidence 33322 345678887654 23334556666666555 5677788887666543
No 396
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=85.74 E-value=9.6 Score=33.95 Aligned_cols=101 Identities=21% Similarity=0.216 Sum_probs=59.6
Q ss_pred HHhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE-cChhhHHHHHHhCC
Q 023645 114 LVQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNG 191 (279)
Q Consensus 114 l~~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~-gd~~~~l~~~~~~~ 191 (279)
.....++.+||=.|+| .|..+..+++... +.++++++.+++..+.+++ .|...-+.... .+..+.+...
T Consensus 157 ~~~~~~g~~vlV~g~g~vG~~~~~la~~~~-g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~v~~~---- 227 (338)
T PRK09422 157 VSGIKPGQWIAIYGAGGLGNLALQYAKNVF-NAKVIAVDINDDKLALAKE----VGADLTINSKRVEDVAKIIQEK---- 227 (338)
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHH----cCCcEEecccccccHHHHHHHh----
Confidence 3445567788888853 2445555566532 5789999999988777743 34421111111 1112222222
Q ss_pred CCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
.+.+|.++.+... ...++.+.+.|+++|.++.
T Consensus 228 -~~~~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~ 259 (338)
T PRK09422 228 -TGGAHAAVVTAVA---KAAFNQAVDAVRAGGRVVA 259 (338)
T ss_pred -cCCCcEEEEeCCC---HHHHHHHHHhccCCCEEEE
Confidence 2358877766542 2457888899999999885
No 397
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=85.69 E-value=3.9 Score=36.18 Aligned_cols=34 Identities=12% Similarity=0.208 Sum_probs=27.3
Q ss_pred CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
..+|+||+-.........++.+.+.+.++.+++.
T Consensus 67 ~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred CCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEE
Confidence 6789999887766778888888888888876653
No 398
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=85.46 E-value=3 Score=35.61 Aligned_cols=62 Identities=24% Similarity=0.198 Sum_probs=47.2
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (279)
Q Consensus 117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~ 182 (279)
.....-|.|||.|.|..+..+..+- -.++..+|.++.++.-.+-..+.+. .+..++++|+..
T Consensus 48 ~~~~~~v~eIgPgpggitR~il~a~--~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR 109 (326)
T KOG0821|consen 48 NLTNAYVYEIGPGPGGITRSILNAD--VARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLR 109 (326)
T ss_pred ccccceeEEecCCCCchhHHHHhcc--hhheeeeeeccccChHHHHHhhcCC--cceEEeccccce
Confidence 3445689999999999999998763 3588999999988776665555333 368889998864
No 399
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=85.41 E-value=9.2 Score=34.86 Aligned_cols=96 Identities=15% Similarity=0.148 Sum_probs=53.9
Q ss_pred cCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 118 ~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
.++++||-.|+| .|..+..+++.. +.++++++.+++....+ .++.|... .+...+. +.+... .+.+
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~---~~~~Ga~~--vi~~~~~-~~~~~~-----~~~~ 248 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDEA---INRLGADS--FLVSTDP-EKMKAA-----IGTM 248 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhhH---HHhCCCcE--EEcCCCH-HHHHhh-----cCCC
Confidence 456788888875 344555566665 46888888876543222 22334321 1111111 122222 2358
Q ss_pred EEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229 (279)
Q Consensus 197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd 229 (279)
|+||-... ....++.+.+.|++||.++.-.
T Consensus 249 D~vid~~g---~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 249 DYIIDTVS---AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CEEEECCC---CHHHHHHHHHHhcCCcEEEEeC
Confidence 98884332 2235777889999999988643
No 400
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=85.32 E-value=0.73 Score=43.29 Aligned_cols=111 Identities=15% Similarity=0.118 Sum_probs=61.4
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh-HHHHHHhCCCCCc
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD-SLKALILNGEASS 195 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~-~l~~~~~~~~~~~ 195 (279)
..+..+.|+|.|.|.-.-.+....+. .-.++.||.+..|......+.........+.+..--..+ .++.. ....
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~----~~~~ 274 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPID----IKNG 274 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCC----cccc
Confidence 35667888888866533333332331 236899999999998887777641111112121101111 11111 1456
Q ss_pred EEEEEEeCC------ccchHH-HHHHHHccCCCCcEEEEeCCCCCCc
Q 023645 196 YDFAFVDAE------KRMYQE-YFELLLQLIRVGGIIVIDNVLWHGK 235 (279)
Q Consensus 196 fDlI~id~~------~~~~~~-~l~~~~~~Lk~gG~lv~dd~~~~g~ 235 (279)
||+|++.+. ...... .-..+....++|+.+|+ ++.|.
T Consensus 275 yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lVi---Ie~g~ 318 (491)
T KOG2539|consen 275 YDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVI---IEKGT 318 (491)
T ss_pred eeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEE---EecCC
Confidence 999998653 112222 23344578899998887 56664
No 401
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=85.16 E-value=2.5 Score=37.06 Aligned_cols=40 Identities=20% Similarity=0.139 Sum_probs=32.2
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCC----CCCEEEEEeCChhHH
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLP----ESGCLVACERDARSL 157 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~----~~~~v~~iD~s~~~~ 157 (279)
.+...++|+|||.|..+.+++..++ ....++.||......
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~ 60 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH 60 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc
Confidence 3556899999999999999999884 246899999865433
No 402
>PRK08324 short chain dehydrogenase; Validated
Probab=85.14 E-value=8.7 Score=38.46 Aligned_cols=82 Identities=18% Similarity=0.180 Sum_probs=49.8
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCC--CC
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EA 193 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~--~~ 193 (279)
.+++||-.|+ +|..+..+++.+. .+.+|+.+|.+++..+.+.+.+... .++.++.+|..+. +....+.- ..
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4578888885 4556666665542 3579999999987766555544322 3578888887542 11111100 02
Q ss_pred CcEEEEEEeCC
Q 023645 194 SSYDFAFVDAE 204 (279)
Q Consensus 194 ~~fDlI~id~~ 204 (279)
+.+|+||..+.
T Consensus 497 g~iDvvI~~AG 507 (681)
T PRK08324 497 GGVDIVVSNAG 507 (681)
T ss_pred CCCCEEEECCC
Confidence 47899987654
No 403
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=85.00 E-value=5 Score=35.30 Aligned_cols=85 Identities=15% Similarity=0.087 Sum_probs=49.6
Q ss_pred EEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645 122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (279)
Q Consensus 122 ~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~ 200 (279)
+|.=||+| ..+..++..+. .+.+|+++|.+++..+.+.+. |. +.....+. .. -...|+||
T Consensus 2 ~I~IIG~G--~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~----~~------~~~aDlVi 62 (279)
T PRK07417 2 KIGIVGLG--LIGGSLGLDLRSLGHTVYGVSRRESTCERAIER----GL---VDEASTDL----SL------LKDCDLVI 62 (279)
T ss_pred eEEEEeec--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC----CC---cccccCCH----hH------hcCCCEEE
Confidence 46667764 44444444432 145899999998876665432 22 11111111 11 24578888
Q ss_pred EeCCccchHHHHHHHHccCCCCcEE
Q 023645 201 VDAEKRMYQEYFELLLQLIRVGGII 225 (279)
Q Consensus 201 id~~~~~~~~~l~~~~~~Lk~gG~l 225 (279)
+..+.....+.++.+.+.++++.++
T Consensus 63 lavp~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 63 LALPIGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred EcCCHHHHHHHHHHHHHhCCCCcEE
Confidence 8877666667777777777776433
No 404
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=84.96 E-value=5.1 Score=35.50 Aligned_cols=88 Identities=23% Similarity=0.272 Sum_probs=51.1
Q ss_pred CEEEEEcCccCHHHHHHHHHCCC---CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 121 QRCIEVGVYTGYSSLAIALVLPE---SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 121 ~~VLEiG~G~G~~t~~la~~~~~---~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
++|+=+|. |..+-++++.+.. ...+++.|.+....+.+.+ .|+.+ +.. .+. . ... ....|
T Consensus 4 ~~v~IvG~--GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv~d--~~~-~~~-~-~~~------~~~aD 66 (279)
T COG0287 4 MKVGIVGL--GLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGVID--ELT-VAG-L-AEA------AAEAD 66 (279)
T ss_pred cEEEEECC--chHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCccc--ccc-cch-h-hhh------cccCC
Confidence 36777775 5555555554432 2456777777765544432 23322 110 011 0 111 35679
Q ss_pred EEEEeCCccchHHHHHHHHccCCCCcEE
Q 023645 198 FAFVDAEKRMYQEYFELLLQLIRVGGII 225 (279)
Q Consensus 198 lI~id~~~~~~~~~l~~~~~~Lk~gG~l 225 (279)
+||+..+.....++++++.+.|++|..+
T Consensus 67 ~VivavPi~~~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 67 LVIVAVPIEATEEVLKELAPHLKKGAIV 94 (279)
T ss_pred EEEEeccHHHHHHHHHHhcccCCCCCEE
Confidence 9998888888888888888888886443
No 405
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=84.72 E-value=2.8 Score=36.55 Aligned_cols=75 Identities=19% Similarity=0.306 Sum_probs=45.9
Q ss_pred HHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHH
Q 023645 134 SLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFE 213 (279)
Q Consensus 134 t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~ 213 (279)
+..+.+..+ ..+|+++|.+++..+.|.+ .|..+. .. .+ ...+ ..+|+|++..+.......++
T Consensus 2 A~aL~~~g~-~~~v~g~d~~~~~~~~a~~----~g~~~~--~~-~~----~~~~------~~~DlvvlavP~~~~~~~l~ 63 (258)
T PF02153_consen 2 ALALRKAGP-DVEVYGYDRDPETLEAALE----LGIIDE--AS-TD----IEAV------EDADLVVLAVPVSAIEDVLE 63 (258)
T ss_dssp HHHHHHTTT-TSEEEEE-SSHHHHHHHHH----TTSSSE--EE-SH----HHHG------GCCSEEEE-S-HHHHHHHHH
T ss_pred hHHHHhCCC-CeEEEEEeCCHHHHHHHHH----CCCeee--cc-CC----HhHh------cCCCEEEEcCCHHHHHHHHH
Confidence 344454433 5799999999998766643 344331 11 11 1121 45699999888888888899
Q ss_pred HHHccCCCCcEEE
Q 023645 214 LLLQLIRVGGIIV 226 (279)
Q Consensus 214 ~~~~~Lk~gG~lv 226 (279)
++.+.+++|+++.
T Consensus 64 ~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 64 EIAPYLKPGAIVT 76 (258)
T ss_dssp HHHCGS-TTSEEE
T ss_pred HhhhhcCCCcEEE
Confidence 9988888875543
No 406
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=84.52 E-value=13 Score=33.80 Aligned_cols=102 Identities=18% Similarity=0.271 Sum_probs=57.5
Q ss_pred HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc--ChhhHHHHHHhCC
Q 023645 115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG--LAADSLKALILNG 191 (279)
Q Consensus 115 ~~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g--d~~~~l~~~~~~~ 191 (279)
....++.+||=.|+| .|..+..+++..+ ...+++++.+++..+.+++ .|...-+..... +..+.+..+.
T Consensus 179 ~~~~~g~~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~--- 250 (365)
T cd05279 179 AKVTPGSTCAVFGLGGVGLSVIMGCKAAG-ASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMT--- 250 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHh---
Confidence 344567788888764 2334444566553 2258888988887766643 344321222222 2222222221
Q ss_pred CCCcEEEEEEeCCccchHHHHHHHHccCC-CCcEEEEe
Q 023645 192 EASSYDFAFVDAEKRMYQEYFELLLQLIR-VGGIIVID 228 (279)
Q Consensus 192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk-~gG~lv~d 228 (279)
.+.+|+|+-.... ...+..+.+.|+ ++|.++.-
T Consensus 251 -~~~~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 251 -DGGVDYAFEVIGS---ADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred -CCCCcEEEECCCC---HHHHHHHHHHhccCCCEEEEE
Confidence 2468988843221 245677888899 99998864
No 407
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=84.48 E-value=7.7 Score=37.31 Aligned_cols=104 Identities=11% Similarity=0.099 Sum_probs=65.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhc--CCCEEEEEcCccCHHHHHHHHHCC---CCCEEEEEeCChhHHHHHHHHHHHhCCC-
Q 023645 97 RGSQMQVSPDQAQLLAMLVQIL--GAQRCIEVGVYTGYSSLAIALVLP---ESGCLVACERDARSLEVAKKYYERAGVS- 170 (279)
Q Consensus 97 ~~~~~~~~~~~~~~l~~l~~~~--~~~~VLEiG~G~G~~t~~la~~~~---~~~~v~~iD~s~~~~~~a~~~~~~~g~~- 170 (279)
+.+...+......++..++... ++..|.|.-||+|.........+. ....+++-+..+.+...++.++.-.+..
T Consensus 193 ~~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~ 272 (501)
T TIGR00497 193 SGGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDY 272 (501)
T ss_pred cCceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCc
Confidence 4445556666666666665533 446899999999998776544332 1246999999999999999987665553
Q ss_pred CcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC
Q 023645 171 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAE 204 (279)
Q Consensus 171 ~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~ 204 (279)
+......+|........ ...+||.|+.+++
T Consensus 273 ~t~~~~~~dtl~~~d~~----~~~~~D~v~~NpP 302 (501)
T TIGR00497 273 ANFNIINADTLTTKEWE----NENGFEVVVSNPP 302 (501)
T ss_pred cccCcccCCcCCCcccc----ccccCCEEeecCC
Confidence 22344445543321111 1356888876653
No 408
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=84.46 E-value=10 Score=34.41 Aligned_cols=98 Identities=23% Similarity=0.352 Sum_probs=55.6
Q ss_pred cCCCEEEEEcCc-cCHHHHHHHHHCCCCCE-EEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645 118 LGAQRCIEVGVY-TGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (279)
Q Consensus 118 ~~~~~VLEiG~G-~G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~ 195 (279)
.++.+||-.|+| .|..+..+++..+ .+ +++++.+++..+.+++ .|...-+.....+..+.+.... ....
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G--~~~vi~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~---~~~~ 256 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFG--ASPIIAVDVRDEKLAKAKE----LGATHTVNAAKEDAVAAIREIT---GGRG 256 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHH----hCCceEecCCcccHHHHHHHHh---CCCC
Confidence 456778776654 4455556666653 45 8999888877665543 3432211111122222222221 1356
Q ss_pred EEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 196 fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
+|+|+-..... ...+.+.+.|+++|.++.
T Consensus 257 ~d~vld~vg~~---~~~~~~~~~l~~~G~~v~ 285 (367)
T cd08263 257 VDVVVEALGKP---ETFKLALDVVRDGGRAVV 285 (367)
T ss_pred CCEEEEeCCCH---HHHHHHHHHHhcCCEEEE
Confidence 99988433222 356778889999998875
No 409
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=84.30 E-value=2.9 Score=37.48 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=26.9
Q ss_pred CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
...+|+||+-....+..+.++.+.+++++++.++.
T Consensus 70 ~~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 70 MPPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred cCCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEE
Confidence 36799999876655666778888888998887654
No 410
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=84.14 E-value=4.1 Score=36.55 Aligned_cols=110 Identities=13% Similarity=0.113 Sum_probs=66.0
Q ss_pred CCEEEEEcCccCHHHHHHHHHC-------------------CCCCEEEEEeCChhH--HHHHHHHHHHh----------C
Q 023645 120 AQRCIEVGVYTGYSSLAIALVL-------------------PESGCLVACERDARS--LEVAKKYYERA----------G 168 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~-------------------~~~~~v~~iD~s~~~--~~~a~~~~~~~----------g 168 (279)
..+||-||-|.|.-...++..+ ++...++.||+.+-. +......+... .
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3699999999988777777665 011489999997632 33333333222 0
Q ss_pred C----C--CcEEEEEcChhhHHH-HHHhCCCCCcEEEEEE--------eCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645 169 V----S--HKVKIKHGLAADSLK-ALILNGEASSYDFAFV--------DAEKRMYQEYFELLLQLIRVGGIIVIDN 229 (279)
Q Consensus 169 ~----~--~~v~~~~gd~~~~l~-~~~~~~~~~~fDlI~i--------d~~~~~~~~~l~~~~~~Lk~gG~lv~dd 229 (279)
+ . -.++|.+.|++.... .+...-.....|+|.+ .........+|..+-..++||.++++-|
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvD 242 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVD 242 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEc
Confidence 0 1 137889999876422 1111000124566521 1125556788999999999999887744
No 411
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=84.14 E-value=2.9 Score=29.28 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=21.8
Q ss_pred cCCCEEEEEcCccCH-HHHHHHHHCCCCCEEEEEeCC
Q 023645 118 LGAQRCIEVGVYTGY-SSLAIALVLPESGCLVACERD 153 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~-~t~~la~~~~~~~~v~~iD~s 153 (279)
..|++||-|||-+|+ .+..++.++.-++..+++-..
T Consensus 37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 457899999999998 344466666556777776554
No 412
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=84.10 E-value=9.8 Score=32.80 Aligned_cols=94 Identities=21% Similarity=0.257 Sum_probs=57.0
Q ss_pred HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCE-EEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645 115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (279)
Q Consensus 115 ~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~ 192 (279)
....++.+||-.|+|. |..+..+++..+ .+ |++++.+++..+.+++. |..+.+..... ... .
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g--~~~vi~~~~~~~~~~~~~~~----g~~~~~~~~~~---~~~-------~ 156 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAG--AREVVGVDPDAARRELAEAL----GPADPVAADTA---DEI-------G 156 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEECCCHHHHHHHHHc----CCCccccccch---hhh-------c
Confidence 3455678888888764 556666777664 45 99999988877665542 31111111100 011 1
Q ss_pred CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
...+|+||..... ...+....+.|+++|.++.
T Consensus 157 ~~~~d~vl~~~~~---~~~~~~~~~~l~~~g~~~~ 188 (277)
T cd08255 157 GRGADVVIEASGS---PSALETALRLLRDRGRVVL 188 (277)
T ss_pred CCCCCEEEEccCC---hHHHHHHHHHhcCCcEEEE
Confidence 3568988854332 2356677888999998875
No 413
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=83.97 E-value=17 Score=32.58 Aligned_cols=100 Identities=18% Similarity=0.222 Sum_probs=56.0
Q ss_pred hcCCCEEEEEcCc-cCHHHHHHHHHCCCCCE-EEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645 117 ILGAQRCIEVGVY-TGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (279)
Q Consensus 117 ~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~ 194 (279)
..++.+||-.|+| .|..+..+++.. +.+ |++++.+++..+.+++ .|...-+.....+..+.+..+. +..
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~--G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~---~~~ 229 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKAS--GAYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLT---DGE 229 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhc---CCC
Confidence 3456677766654 344555566665 354 8888777766555443 3432212222223333332221 135
Q ss_pred cEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645 195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
.+|+|+-.... ...+..+.+.|+++|.++.-
T Consensus 230 ~~d~vld~~g~---~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 230 GVDVFLEMSGA---PKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred CCCEEEECCCC---HHHHHHHHHhhcCCCEEEEE
Confidence 68988764332 24567788889999988764
No 414
>PLN02256 arogenate dehydrogenase
Probab=83.91 E-value=13 Score=33.33 Aligned_cols=85 Identities=16% Similarity=0.126 Sum_probs=48.1
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
..++|.=||+ |..+..++..+.. +.+|+++|.++. .+.+ ...|. .. ..+..+.+ ....|
T Consensus 35 ~~~kI~IIG~--G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a----~~~gv----~~-~~~~~e~~--------~~~aD 94 (304)
T PLN02256 35 RKLKIGIVGF--GNFGQFLAKTFVKQGHTVLATSRSDY-SDIA----AELGV----SF-FRDPDDFC--------EEHPD 94 (304)
T ss_pred CCCEEEEEee--CHHHHHHHHHHHhCCCEEEEEECccH-HHHH----HHcCC----ee-eCCHHHHh--------hCCCC
Confidence 4457888887 5555555554422 358999999863 2222 22232 21 12222211 13468
Q ss_pred EEEEeCCccchHHHHHHH-HccCCCCc
Q 023645 198 FAFVDAEKRMYQEYFELL-LQLIRVGG 223 (279)
Q Consensus 198 lI~id~~~~~~~~~l~~~-~~~Lk~gG 223 (279)
+|++..+.....+.++.+ ...+++|.
T Consensus 95 vVilavp~~~~~~vl~~l~~~~l~~~~ 121 (304)
T PLN02256 95 VVLLCTSILSTEAVLRSLPLQRLKRST 121 (304)
T ss_pred EEEEecCHHHHHHHHHhhhhhccCCCC
Confidence 888877766666777776 55677765
No 415
>PRK09028 cystathionine beta-lyase; Provisional
Probab=83.88 E-value=24 Score=32.88 Aligned_cols=117 Identities=13% Similarity=0.146 Sum_probs=63.3
Q ss_pred HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCCh-hHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC
Q 023645 113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDA-RSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG 191 (279)
Q Consensus 113 ~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~-~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~ 191 (279)
.++....+..++-..+|+......+...+.++.+|+..+..- .....+...+...|. .+.++..+..+.+....
T Consensus 69 ~iA~le~~~~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi--~v~~v~~~~~e~l~~~l--- 143 (394)
T PRK09028 69 AIVELEGGAGTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGI--ETTYYDPMIGEGIRELI--- 143 (394)
T ss_pred HHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcce--EEEEECCCCHHHHHHhc---
Confidence 333333444677666666655555444455577888877653 333444444554454 24444322223333332
Q ss_pred CCCcEEEEEEeCC--ccchHHHHHHHHccCCC-CcEEEEeCCCCCCc
Q 023645 192 EASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVLWHGK 235 (279)
Q Consensus 192 ~~~~fDlI~id~~--~~~~~~~l~~~~~~Lk~-gG~lv~dd~~~~g~ 235 (279)
..+-.+|++..+ .......++.+.++.+. |..+++|++...+.
T Consensus 144 -~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~ 189 (394)
T PRK09028 144 -RPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPI 189 (394)
T ss_pred -CcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCccccc
Confidence 244678888754 22334556666666655 56777788875553
No 416
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=83.69 E-value=14 Score=33.04 Aligned_cols=102 Identities=24% Similarity=0.321 Sum_probs=58.6
Q ss_pred HHhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCE-EEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC
Q 023645 114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG 191 (279)
Q Consensus 114 l~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~ 191 (279)
.....++.+||-.|+|. |..+..+++..+ .+ +++++.+++..+.++ ..|...-+...... .+.+....
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G--~~~v~~~~~~~~~~~~l~----~~g~~~~~~~~~~~-~~~~~~~~--- 223 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKILG--AKRVIAVDIDDEKLAVAR----ELGADDTINPKEED-VEKVRELT--- 223 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHH----HcCCCEEecCcccc-HHHHHHHh---
Confidence 34445677888888754 566666777654 44 899988877665553 23432211211111 22222221
Q ss_pred CCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645 192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
....+|+++-.... ...+..+.+.|+++|.++.-
T Consensus 224 ~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 224 EGRGADLVIEAAGS---PATIEQALALARPGGKVVLV 257 (343)
T ss_pred CCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEE
Confidence 12459988854322 23567778899999988753
No 417
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=83.68 E-value=4.8 Score=39.22 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=57.5
Q ss_pred CEEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645 121 QRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (279)
Q Consensus 121 ~~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI 199 (279)
.+|+=+|| |..+..+++.+.+ +..++.+|.+++.++.+++ . ....+.||+.+. ..+ ++-+-++.|.+
T Consensus 418 ~hiiI~G~--G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~----g~~~i~GD~~~~-~~L-~~a~i~~a~~v 485 (558)
T PRK10669 418 NHALLVGY--GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----R----GIRAVLGNAANE-EIM-QLAHLDCARWL 485 (558)
T ss_pred CCEEEECC--ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----C----CCeEEEcCCCCH-HHH-HhcCccccCEE
Confidence 35665555 7788888887643 4589999999988777654 1 268899998752 111 11123578877
Q ss_pred EEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 200 FVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 200 ~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
++..+.+.....+-...+...|...++.
T Consensus 486 iv~~~~~~~~~~iv~~~~~~~~~~~iia 513 (558)
T PRK10669 486 LLTIPNGYEAGEIVASAREKRPDIEIIA 513 (558)
T ss_pred EEEcCChHHHHHHHHHHHHHCCCCeEEE
Confidence 7654332222223333445567766665
No 418
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=83.62 E-value=6.3 Score=34.90 Aligned_cols=78 Identities=13% Similarity=0.175 Sum_probs=48.0
Q ss_pred CCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCCCCCcE
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSY 196 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~~~~~f 196 (279)
+++||-.| |+|+.+..+++.+- .+.+|++++.++.............+...+++++.+|..+. +... -..+
T Consensus 4 ~~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-----~~~~ 77 (322)
T PLN02662 4 GKVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSV-----VDGC 77 (322)
T ss_pred CCEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHH-----HcCC
Confidence 46788887 57888888887753 34588888877653322222221122234689999998752 2333 2457
Q ss_pred EEEEEeC
Q 023645 197 DFAFVDA 203 (279)
Q Consensus 197 DlI~id~ 203 (279)
|.||..+
T Consensus 78 d~Vih~A 84 (322)
T PLN02662 78 EGVFHTA 84 (322)
T ss_pred CEEEEeC
Confidence 9888654
No 419
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=83.54 E-value=11 Score=33.50 Aligned_cols=95 Identities=14% Similarity=0.105 Sum_probs=53.1
Q ss_pred CCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 119 ~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
.+++|+=||+|. |......+..+ +++|+.+|.+++..+.++ ..|. +++ +. +.+... -..+|
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~----~~G~----~~~--~~-~~l~~~-----l~~aD 212 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARIT----EMGL----SPF--HL-SELAEE-----VGKID 212 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH----HcCC----eee--cH-HHHHHH-----hCCCC
Confidence 578999999863 22233333343 479999999976544432 2332 222 11 222222 25789
Q ss_pred EEEEeCCccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645 198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGK 235 (279)
Q Consensus 198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~ 235 (279)
+||...+.. -.-+.....++||++ ++|-...+|.
T Consensus 213 iVI~t~p~~---~i~~~~l~~~~~g~v-IIDla~~pgg 246 (296)
T PRK08306 213 IIFNTIPAL---VLTKEVLSKMPPEAL-IIDLASKPGG 246 (296)
T ss_pred EEEECCChh---hhhHHHHHcCCCCcE-EEEEccCCCC
Confidence 999764422 123456677888765 4444444443
No 420
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=83.50 E-value=14 Score=32.75 Aligned_cols=97 Identities=12% Similarity=0.094 Sum_probs=53.4
Q ss_pred CCCEEEEE--cC-ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645 119 GAQRCIEV--GV-YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (279)
Q Consensus 119 ~~~~VLEi--G~-G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~ 195 (279)
.+.++|=+ |+ +.|..+..+++.. +.++++++.+++..+.+++ .|...-+.....+..+.+.... ....
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~v~~~~---~~~~ 212 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKAD--GIKVINIVRRKEQVDLLKK----IGAEYVLNSSDPDFLEDLKELI---AKLN 212 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEECCCccHHHHHHHHh---CCCC
Confidence 34455544 33 2455556667765 4689999999887777655 3443212222223322222221 1246
Q ss_pred EEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645 196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 196 fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
+|++|-..... ........|++||.++.-
T Consensus 213 ~d~vid~~g~~----~~~~~~~~l~~~G~~v~~ 241 (324)
T cd08291 213 ATIFFDAVGGG----LTGQILLAMPYGSTLYVY 241 (324)
T ss_pred CcEEEECCCcH----HHHHHHHhhCCCCEEEEE
Confidence 89888433322 234457788999988763
No 421
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=83.42 E-value=2.5 Score=34.21 Aligned_cols=95 Identities=15% Similarity=0.190 Sum_probs=52.1
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcE-EEEEcChhhHHHHHHhCCCCCcEEE
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV-KIKHGLAADSLKALILNGEASSYDF 198 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v-~~~~gd~~~~l~~~~~~~~~~~fDl 198 (279)
+++++-+|+..=..-. +|-..+ ..+|.++|.++--++ +. ..+++ ++...|+....... .++||+
T Consensus 2 ~~~g~V~GS~~PwvEv-~aL~~G-A~~iltveyn~L~i~---~~-----~~dr~ssi~p~df~~~~~~y-----~~~fD~ 66 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEV-MALQHG-AAKILTVEYNKLEIQ---EE-----FRDRLSSILPVDFAKNWQKY-----AGSFDF 66 (177)
T ss_pred CceEEEEecCCchhhH-HHHHcC-CceEEEEeecccccC---cc-----cccccccccHHHHHHHHHHh-----hccchh
Confidence 4678888887443333 333333 468999998762211 10 11222 22222332222222 578998
Q ss_pred EEEeCC--------------ccchHHHHHHHHccCCCCcEEEEeC
Q 023645 199 AFVDAE--------------KRMYQEYFELLLQLIRVGGIIVIDN 229 (279)
Q Consensus 199 I~id~~--------------~~~~~~~l~~~~~~Lk~gG~lv~dd 229 (279)
+.+-+. .......+.++..+|||||.+++.-
T Consensus 67 ~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 67 AASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred hheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEe
Confidence 754321 2223456777789999999999853
No 422
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=83.34 E-value=1.8 Score=35.08 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=31.6
Q ss_pred hcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHH
Q 023645 117 ILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKK 162 (279)
Q Consensus 117 ~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~ 162 (279)
..+|.+|+=+|.|. |..+..++..++ .+++.+|..++..+..+.
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lG--a~v~~~d~~~~~~~~~~~ 61 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLG--AEVVVPDERPERLRQLES 61 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCC--CEEEeccCCHHHHHhhhc
Confidence 35678999999984 667777888875 899999999876655443
No 423
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=83.29 E-value=14 Score=32.43 Aligned_cols=100 Identities=17% Similarity=0.228 Sum_probs=56.2
Q ss_pred hhcCCCEEEEEcCc--cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645 116 QILGAQRCIEVGVY--TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (279)
Q Consensus 116 ~~~~~~~VLEiG~G--~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~ 193 (279)
...++.+||-.|.+ .|.....++... +.+++.++.+++..+.++. .+....+.....+..+.+.... ..
T Consensus 163 ~~~~~~~vlI~g~~~~iG~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~ 233 (342)
T cd08266 163 RLRPGETVLVHGAGSGVGSAAIQIAKLF--GATVIATAGSEDKLERAKE----LGADYVIDYRKEDFVREVRELT---GK 233 (342)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCeEEecCChHHHHHHHHHh---CC
Confidence 34566788888875 444555555554 4789999988876655532 2332112111111212222211 13
Q ss_pred CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645 194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
..+|+++..... ..++.+.+.++++|.++.-
T Consensus 234 ~~~d~~i~~~g~----~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 234 RGVDVVVEHVGA----ATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred CCCcEEEECCcH----HHHHHHHHHhhcCCEEEEE
Confidence 468988865442 2456677888999988753
No 424
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=83.22 E-value=2.4 Score=36.90 Aligned_cols=102 Identities=20% Similarity=0.194 Sum_probs=67.4
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCC-----------CCEEEEEeCChhHHHH-------------HHHHHH----------
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLPE-----------SGCLVACERDARSLEV-------------AKKYYE---------- 165 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~~-----------~~~v~~iD~s~~~~~~-------------a~~~~~---------- 165 (279)
.-.|+|+|-|+|...+...+.++. .-++++++.+|-.... +.+...
T Consensus 59 ~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~ 138 (252)
T COG4121 59 ILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCA 138 (252)
T ss_pred ceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhH
Confidence 347999999999988777665532 1257888877643211 111111
Q ss_pred ---HhCCCCcEEEEEcChhhHHHHHHhCCCCC---cEEEEEEeCC------ccchHHHHHHHHccCCCCcEEEE
Q 023645 166 ---RAGVSHKVKIKHGLAADSLKALILNGEAS---SYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 166 ---~~g~~~~v~~~~gd~~~~l~~~~~~~~~~---~fDlI~id~~------~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
..|. -...+..||+.+.++.. +. ++|+.|.|+- .-...+.+..+.+..++||.+.-
T Consensus 139 r~~~~g~-~~l~l~~gd~~~~~p~~-----~~~~~~~dAwflDgFsP~kNP~mW~~e~l~~~a~~~~~~~~l~t 206 (252)
T COG4121 139 AAVRHGL-LLLGLVIGDAGDGIPPV-----PRRRPGTDAWFLDGFRPVKNPEMWEDELLNLMARIPYRDPTLAT 206 (252)
T ss_pred Hhhhcch-heeeeeeeehhhcCCcc-----cccccCccEEecCCccccCChhhccHHHHHHHHhhcCCCCceec
Confidence 1121 23677888888776655 33 7999999863 11356788899999999999875
No 425
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.22 E-value=12 Score=32.92 Aligned_cols=95 Identities=13% Similarity=0.149 Sum_probs=53.1
Q ss_pred CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh--------CCC---------CcEEEEEcChhhH
Q 023645 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--------GVS---------HKVKIKHGLAADS 183 (279)
Q Consensus 121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--------g~~---------~~v~~~~gd~~~~ 183 (279)
++|.-||+|.-..++...-+.. +.+|+.+|.+++.++.+++.++.. .+. .++++. .|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHH
Confidence 4688888864333333222212 468999999999888877654211 110 123322 222111
Q ss_pred HHHHHhCCCCCcEEEEEEeCCcc--chHHHHHHHHccCCCCcEEE
Q 023645 184 LKALILNGEASSYDFAFVDAEKR--MYQEYFELLLQLIRVGGIIV 226 (279)
Q Consensus 184 l~~~~~~~~~~~fDlI~id~~~~--~~~~~l~~~~~~Lk~gG~lv 226 (279)
-..-|+|+...+.. .....++.+.+.++++.+|+
T Consensus 82 ---------~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 117 (287)
T PRK08293 82 ---------VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFA 117 (287)
T ss_pred ---------hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 24568888765522 34566777777777776554
No 426
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=83.20 E-value=13 Score=32.62 Aligned_cols=93 Identities=13% Similarity=0.141 Sum_probs=53.3
Q ss_pred EEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCC---CcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVS---HKVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 122 ~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~---~~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
+|.=||+| ..+..++..+. .+.+|+.++.+++..+..++ .|+. ...... ....+.... ...+|
T Consensus 2 ~I~IiG~G--~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~----~g~~~~~~~~~~~-~~~~~~~~~------~~~~d 68 (304)
T PRK06522 2 KIAILGAG--AIGGLFGAALAQAGHDVTLVARRGAHLDALNE----NGLRLEDGEITVP-VLAADDPAE------LGPQD 68 (304)
T ss_pred EEEEECCC--HHHHHHHHHHHhCCCeEEEEECChHHHHHHHH----cCCcccCCceeec-ccCCCChhH------cCCCC
Confidence 57788885 44444444332 14589999987766544433 2331 111100 001111111 26789
Q ss_pred EEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
+||+-.........++.+.+.+.++..++.
T Consensus 69 ~vila~k~~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 69 LVILAVKAYQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred EEEEecccccHHHHHHHHhhhcCCCCEEEE
Confidence 999887766778888888888888765553
No 427
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=82.71 E-value=4.9 Score=35.09 Aligned_cols=90 Identities=19% Similarity=0.275 Sum_probs=51.3
Q ss_pred CCCEEEEEcCccC----HHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645 119 GAQRCIEVGVYTG----YSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (279)
Q Consensus 119 ~~~~VLEiG~G~G----~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~ 194 (279)
..++||-+|.|+- --+..+-+.+|.++.++-.|+.+- .++--..+.+|.....+ +.
T Consensus 61 ~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~-------------vSDa~~~~~~Dc~t~~~-------~~ 120 (299)
T PF06460_consen 61 HNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDY-------------VSDADQSIVGDCRTYMP-------PD 120 (299)
T ss_dssp TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS---------------B-SSSEEEES-GGGEEE-------SS
T ss_pred cCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhh-------------ccccCCceeccccccCC-------CC
Confidence 4579999999852 245667788998888999998752 12223566788765543 68
Q ss_pred cEEEEEEeCC-------------ccchHHH-HHHHHccCCCCcEEEEe
Q 023645 195 SYDFAFVDAE-------------KRMYQEY-FELLLQLIRVGGIIVID 228 (279)
Q Consensus 195 ~fDlI~id~~-------------~~~~~~~-l~~~~~~Lk~gG~lv~d 228 (279)
+||+||.|.- ++..-.+ ...+...|+-||-+++.
T Consensus 121 k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiK 168 (299)
T PF06460_consen 121 KFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIK 168 (299)
T ss_dssp -EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEE
Confidence 9999999843 1222222 34445789999999874
No 428
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=82.63 E-value=7.7 Score=36.83 Aligned_cols=92 Identities=14% Similarity=0.163 Sum_probs=55.0
Q ss_pred hhcCCCEEEEEcCccCHHHHHHHHHCCC-CCEEE------EEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHH
Q 023645 116 QILGAQRCIEVGVYTGYSSLAIALVLPE-SGCLV------ACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188 (279)
Q Consensus 116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~-~~~v~------~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~ 188 (279)
....+++|+-|||| ..+...+..+.. +.+|+ +||.+....+.|.+ .|+. .++..+.+
T Consensus 32 ~~LkgKtIaIIGyG--SqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~----dGF~------v~~~~Ea~---- 95 (487)
T PRK05225 32 SYLKGKKIVIVGCG--AQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATE----NGFK------VGTYEELI---- 95 (487)
T ss_pred HHhCCCEEEEEccC--HHHHHHhCCCccccceeEEeccccccccccchHHHHHh----cCCc------cCCHHHHH----
Confidence 34567899999995 555544443332 23444 44444444443332 3441 23433332
Q ss_pred hCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645 189 LNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 189 ~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
..-|+|++-.+......+.+.+.+.||||..|.+.
T Consensus 96 -----~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fs 130 (487)
T PRK05225 96 -----PQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYS 130 (487)
T ss_pred -----HhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEec
Confidence 46789887665444556668999999999999884
No 429
>PRK07582 cystathionine gamma-lyase; Validated
Probab=82.46 E-value=18 Score=33.16 Aligned_cols=113 Identities=16% Similarity=0.154 Sum_probs=57.7
Q ss_pred HHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChh-HHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHH
Q 023645 110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188 (279)
Q Consensus 110 ~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~-~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~ 188 (279)
+-..++... +..++-+++|+......+...+.++.+|+..+.... ....++..++..|. ++.++ +..+.....
T Consensus 56 Le~~lA~l~-~~~~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~--~v~~v--~~~~~~~~~- 129 (366)
T PRK07582 56 LEAALGELE-GAEALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGV--TVREA--PTAGMAEAA- 129 (366)
T ss_pred HHHHHHHHc-CCCEEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeE--EEEEE--CCCChHHHh-
Confidence 333333333 345666788776655555444555667888765543 33444444444443 23333 322211111
Q ss_pred hCCCCCcEEEEEEeCCc--cchHHHHHHHHccCC-CCcEEEEeCCCC
Q 023645 189 LNGEASSYDFAFVDAEK--RMYQEYFELLLQLIR-VGGIIVIDNVLW 232 (279)
Q Consensus 189 ~~~~~~~fDlI~id~~~--~~~~~~l~~~~~~Lk-~gG~lv~dd~~~ 232 (279)
....++|++..+. ......++.+.++.+ .|..+++|++..
T Consensus 130 ----~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~ 172 (366)
T PRK07582 130 ----LAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTA 172 (366)
T ss_pred ----ccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCC
Confidence 2456888876441 111223455555444 467788888753
No 430
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=82.29 E-value=5.4 Score=39.33 Aligned_cols=95 Identities=19% Similarity=0.075 Sum_probs=57.3
Q ss_pred CEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645 121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (279)
Q Consensus 121 ~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI 199 (279)
.+|+= ||.|..+..+++.+. .+.+++.+|.+++.++.+++ .| ..++.||+.+. ..+..- +-++.|.+
T Consensus 401 ~~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~-~~L~~a-gi~~A~~v 468 (601)
T PRK03659 401 PQVII--VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----YG----YKVYYGDATQL-ELLRAA-GAEKAEAI 468 (601)
T ss_pred CCEEE--ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CC----CeEEEeeCCCH-HHHHhc-CCccCCEE
Confidence 35555 455778887777653 24689999999998877654 23 57888998652 112111 13577887
Q ss_pred EEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 200 FVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 200 ~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
++..+........-...+.+.|...++.
T Consensus 469 v~~~~d~~~n~~i~~~~r~~~p~~~Iia 496 (601)
T PRK03659 469 VITCNEPEDTMKIVELCQQHFPHLHILA 496 (601)
T ss_pred EEEeCCHHHHHHHHHHHHHHCCCCeEEE
Confidence 7654433322223333455667766665
No 431
>PRK08655 prephenate dehydrogenase; Provisional
Probab=82.26 E-value=7.4 Score=36.77 Aligned_cols=85 Identities=16% Similarity=0.173 Sum_probs=47.8
Q ss_pred EEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645 122 RCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (279)
Q Consensus 122 ~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~ 200 (279)
+|.=|| |.|..+..++..+.. +.+|+++|.+++.... .....|. .+ ..+..+. -...|+||
T Consensus 2 kI~IIG-G~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~---~a~~~gv----~~-~~~~~e~---------~~~aDvVI 63 (437)
T PRK08655 2 KISIIG-GTGGLGKWFARFLKEKGFEVIVTGRDPKKGKE---VAKELGV----EY-ANDNIDA---------AKDADIVI 63 (437)
T ss_pred EEEEEe-cCCHHHHHHHHHHHHCCCEEEEEECChHHHHH---HHHHcCC----ee-ccCHHHH---------hccCCEEE
Confidence 566676 346666666655432 3589999998765321 1222232 11 1122111 14568888
Q ss_pred EeCCccchHHHHHHHHccCCCCcE
Q 023645 201 VDAEKRMYQEYFELLLQLIRVGGI 224 (279)
Q Consensus 201 id~~~~~~~~~l~~~~~~Lk~gG~ 224 (279)
+..+.......++.+.+.+++|.+
T Consensus 64 lavp~~~~~~vl~~l~~~l~~~~i 87 (437)
T PRK08655 64 ISVPINVTEDVIKEVAPHVKEGSL 87 (437)
T ss_pred EecCHHHHHHHHHHHHhhCCCCCE
Confidence 777666666777777777777653
No 432
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=82.22 E-value=17 Score=31.85 Aligned_cols=98 Identities=16% Similarity=0.179 Sum_probs=62.0
Q ss_pred hcCCCEEEEEc--CccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645 117 ILGAQRCIEVG--VYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (279)
Q Consensus 117 ~~~~~~VLEiG--~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~ 194 (279)
..++.+||--. -|.|.....|++.. +.++++.-...+..+.|++ +|...-|.....|..+....+ ....
T Consensus 144 vkpGhtVlvhaAAGGVGlll~Ql~ra~--~a~tI~~asTaeK~~~ake----nG~~h~I~y~~eD~v~~V~ki---TngK 214 (336)
T KOG1197|consen 144 VKPGHTVLVHAAAGGVGLLLCQLLRAV--GAHTIATASTAEKHEIAKE----NGAEHPIDYSTEDYVDEVKKI---TNGK 214 (336)
T ss_pred CCCCCEEEEEeccccHHHHHHHHHHhc--CcEEEEEeccHHHHHHHHh----cCCcceeeccchhHHHHHHhc---cCCC
Confidence 34566666543 24455556666665 4788888887777777666 455555666666665544333 2235
Q ss_pred cEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
..|.++-....+ .++.-+..||++|.+|-
T Consensus 215 GVd~vyDsvG~d----t~~~sl~~Lk~~G~mVS 243 (336)
T KOG1197|consen 215 GVDAVYDSVGKD----TFAKSLAALKPMGKMVS 243 (336)
T ss_pred Cceeeeccccch----hhHHHHHHhccCceEEE
Confidence 688887444443 36667889999999885
No 433
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=82.17 E-value=11 Score=33.94 Aligned_cols=95 Identities=14% Similarity=0.190 Sum_probs=54.9
Q ss_pred EEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHH---HHH---hCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645 122 RCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKY---YER---AGVSHKVKIKHGLAADSLKALILNGEAS 194 (279)
Q Consensus 122 ~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~---~~~---~g~~~~v~~~~gd~~~~l~~~~~~~~~~ 194 (279)
+|.=||+ |.++..++..+.. +.+|+.++.+++.++..++. ... ..+...+.+. .|..+. . .+
T Consensus 2 kI~IiGa--Ga~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~---~-----~~ 70 (326)
T PRK14620 2 KISILGA--GSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEV---L-----SD 70 (326)
T ss_pred EEEEECc--CHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHH---H-----hC
Confidence 4667787 4555555544322 35789999888766555442 110 0011112222 222211 1 25
Q ss_pred cEEEEEEeCCccchHHHHHHHHc-cCCCCcEEEE
Q 023645 195 SYDFAFVDAEKRMYQEYFELLLQ-LIRVGGIIVI 227 (279)
Q Consensus 195 ~fDlI~id~~~~~~~~~l~~~~~-~Lk~gG~lv~ 227 (279)
.+|+||+-.......+.++.+.+ .++++..++.
T Consensus 71 ~~Dliiiavks~~~~~~l~~l~~~~l~~~~~vv~ 104 (326)
T PRK14620 71 NATCIILAVPTQQLRTICQQLQDCHLKKNTPILI 104 (326)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 78999998887778888888887 8888765443
No 434
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=82.16 E-value=18 Score=32.94 Aligned_cols=80 Identities=16% Similarity=0.187 Sum_probs=44.8
Q ss_pred CCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCCh---------------------hHHHHHHHHHHHhCCCCcEEEE
Q 023645 119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDA---------------------RSLEVAKKYYERAGVSHKVKIK 176 (279)
Q Consensus 119 ~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~---------------------~~~~~a~~~~~~~g~~~~v~~~ 176 (279)
...+|+-+|||. |......+...+ -++++.+|.+. ...+.+++.+++.+..-+++.+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aG-vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~ 101 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAG-VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI 101 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 456899999973 333322222222 36899999863 2334556666655443345555
Q ss_pred EcChhh-HHHHHHhCCCCCcEEEEEEeCC
Q 023645 177 HGLAAD-SLKALILNGEASSYDFAFVDAE 204 (279)
Q Consensus 177 ~gd~~~-~l~~~~~~~~~~~fDlI~id~~ 204 (279)
..+... ....+ -..+|+|+.-.+
T Consensus 102 ~~~~~~~~~~~~-----~~~~DlVid~~D 125 (339)
T PRK07688 102 VQDVTAEELEEL-----VTGVDLIIDATD 125 (339)
T ss_pred eccCCHHHHHHH-----HcCCCEEEEcCC
Confidence 555432 22333 256899886544
No 435
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=82.10 E-value=12 Score=33.42 Aligned_cols=97 Identities=18% Similarity=0.184 Sum_probs=56.6
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (279)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~ 194 (279)
....+.+||=.|+| .|..+..+++.. +.+++.++.+++..+.+++ .|...-+.....+..+.+... .
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~------~ 227 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLARK----LGAHHYIDTSKEDVAEALQEL------G 227 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----cCCcEEecCCCccHHHHHHhc------C
Confidence 44567789888853 244445556665 4689999998877666643 343211122222222222221 3
Q ss_pred cEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
.+|+++.... ....++...+.|+++|.++.
T Consensus 228 ~~d~vi~~~g---~~~~~~~~~~~l~~~G~~v~ 257 (333)
T cd08296 228 GAKLILATAP---NAKAISALVGGLAPRGKLLI 257 (333)
T ss_pred CCCEEEECCC---chHHHHHHHHHcccCCEEEE
Confidence 5888874321 12457778889999999885
No 436
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=82.00 E-value=3.8 Score=38.01 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=36.4
Q ss_pred HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHH
Q 023645 109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAK 161 (279)
Q Consensus 109 ~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~ 161 (279)
+.-...+++.+..+||-|.+| |..++.++..-| .+|++||+||......+
T Consensus 25 ~vD~~aL~i~~~d~vl~ItSa-G~N~L~yL~~~P--~~I~aVDlNp~Q~aLle 74 (380)
T PF11899_consen 25 RVDMEALNIGPDDRVLTITSA-GCNALDYLLAGP--KRIHAVDLNPAQNALLE 74 (380)
T ss_pred HHHHHHhCCCCCCeEEEEccC-CchHHHHHhcCC--ceEEEEeCCHHHHHHHH
Confidence 344566677788899999765 556665555544 69999999998876654
No 437
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=81.95 E-value=22 Score=30.98 Aligned_cols=97 Identities=22% Similarity=0.315 Sum_probs=59.5
Q ss_pred hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645 116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (279)
Q Consensus 116 ~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~ 193 (279)
....+.+||-.|+ +.|..+..+++.. +.+|+++..+++..+.++ ..|... +-....+..+.+..+ .
T Consensus 139 ~~~~g~~vlV~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~----~~g~~~-~~~~~~~~~~~i~~~-----~ 206 (320)
T cd08243 139 GLQPGDTLLIRGGTSSVGLAALKLAKAL--GATVTATTRSPERAALLK----ELGADE-VVIDDGAIAEQLRAA-----P 206 (320)
T ss_pred CCCCCCEEEEEcCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----hcCCcE-EEecCccHHHHHHHh-----C
Confidence 3456778988885 4666777777775 478999988887665553 234421 211122222222222 2
Q ss_pred CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645 194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
..+|+++-... . ..++.+.+.|+++|.++.-
T Consensus 207 ~~~d~vl~~~~-~---~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 207 GGFDKVLELVG-T---ATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred CCceEEEECCC-h---HHHHHHHHHhccCCEEEEE
Confidence 56999884332 1 3567778999999998863
No 438
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=81.92 E-value=19 Score=31.13 Aligned_cols=100 Identities=16% Similarity=0.154 Sum_probs=58.7
Q ss_pred HhhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645 115 VQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (279)
Q Consensus 115 ~~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~ 192 (279)
....++.+||=.|+ +.|..+..+++.. +.++++++.+++..+.+++ .|.. .++..+-.+....+.....
T Consensus 132 ~~~~~g~~vlI~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~ 202 (320)
T cd05286 132 YPVKPGDTVLVHAAAGGVGLLLTQWAKAL--GATVIGTVSSEEKAELARA----AGAD---HVINYRDEDFVERVREITG 202 (320)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----CCCC---EEEeCCchhHHHHHHHHcC
Confidence 34456788998884 4566667777776 4789999888877665533 3432 1222211112112211111
Q ss_pred CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
...+|+++-.... .....+.+.|+++|.++.
T Consensus 203 ~~~~d~vl~~~~~----~~~~~~~~~l~~~g~~v~ 233 (320)
T cd05286 203 GRGVDVVYDGVGK----DTFEGSLDSLRPRGTLVS 233 (320)
T ss_pred CCCeeEEEECCCc----HhHHHHHHhhccCcEEEE
Confidence 3469999843322 345667888999998874
No 439
>PRK08507 prephenate dehydrogenase; Validated
Probab=81.82 E-value=9.8 Score=33.31 Aligned_cols=85 Identities=20% Similarity=0.234 Sum_probs=51.5
Q ss_pred EEEEEcCccCHHHHHHHHHCCCC---CEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645 122 RCIEVGVYTGYSSLAIALVLPES---GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (279)
Q Consensus 122 ~VLEiG~G~G~~t~~la~~~~~~---~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl 198 (279)
+|.=||+ |..+..++..+... .+|+++|.+++..+.++ ..|... . ..+. ... .. .|+
T Consensus 2 ~I~iIG~--G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~----~~g~~~---~-~~~~----~~~-----~~-aD~ 61 (275)
T PRK08507 2 KIGIIGL--GLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL----ELGLVD---E-IVSF----EEL-----KK-CDV 61 (275)
T ss_pred EEEEEcc--CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH----HCCCCc---c-cCCH----HHH-----hc-CCE
Confidence 4666776 55555555544322 37999999988765543 233321 1 1121 122 23 799
Q ss_pred EEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645 199 AFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 199 I~id~~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
||+..+.....+.+..+.+ +++|.+ ++|
T Consensus 62 Vilavp~~~~~~~~~~l~~-l~~~~i-v~d 89 (275)
T PRK08507 62 IFLAIPVDAIIEILPKLLD-IKENTT-IID 89 (275)
T ss_pred EEEeCcHHHHHHHHHHHhc-cCCCCE-EEE
Confidence 9998887777788888888 887764 444
No 440
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.81 E-value=24 Score=30.22 Aligned_cols=81 Identities=10% Similarity=0.030 Sum_probs=47.4
Q ss_pred CCCEEEEEcCcc-CHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH------HHHHHhC
Q 023645 119 GAQRCIEVGVYT-GYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS------LKALILN 190 (279)
Q Consensus 119 ~~~~VLEiG~G~-G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~------l~~~~~~ 190 (279)
.++.+|-.|.++ +.++..+++.+. .+.+|+.++.+++..+.+++..+..+ .+.++.+|..+. .....+.
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHHH
Confidence 467899999876 367777776653 35688888887654333343333222 245667776532 1222111
Q ss_pred CCCCcEEEEEEeCC
Q 023645 191 GEASSYDFAFVDAE 204 (279)
Q Consensus 191 ~~~~~fDlI~id~~ 204 (279)
.+..|+++.++.
T Consensus 86 --~g~ld~lv~nAg 97 (258)
T PRK07533 86 --WGRLDFLLHSIA 97 (258)
T ss_pred --cCCCCEEEEcCc
Confidence 257899887653
No 441
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=81.78 E-value=10 Score=27.73 Aligned_cols=66 Identities=17% Similarity=0.145 Sum_probs=40.8
Q ss_pred CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (279)
Q Consensus 121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~ 200 (279)
++|| +-||+|.+|-.++..+ ++.+++.|++ +++...+..+.... ...+|+|+
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k~-------------------~~~~~~~gi~--~~v~a~~~~~~~~~------~~~~Dvil 55 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNKM-------------------NKAAEEYGVP--VKIAAGSYGAAGEK------LDDADVVL 55 (95)
T ss_pred cEEE-EECCCchhHHHHHHHH-------------------HHHHHHCCCc--EEEEEecHHHHHhh------cCCCCEEE
Confidence 4666 5588888776666442 4555666764 78887777654332 35689999
Q ss_pred EeCCccchHHHHHH
Q 023645 201 VDAEKRMYQEYFEL 214 (279)
Q Consensus 201 id~~~~~~~~~l~~ 214 (279)
+.+........++.
T Consensus 56 l~pqi~~~~~~i~~ 69 (95)
T TIGR00853 56 LAPQVAYMLPDLKK 69 (95)
T ss_pred ECchHHHHHHHHHH
Confidence 87654443333333
No 442
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=81.73 E-value=9.1 Score=30.67 Aligned_cols=117 Identities=18% Similarity=0.212 Sum_probs=65.7
Q ss_pred EEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645 122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (279)
Q Consensus 122 ~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~ 200 (279)
+|-=||+ |..+..+++.+. .+..|+..|.+++..+...+ .+ ++.. .+..+.. ...|+||
T Consensus 3 ~Ig~IGl--G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~----~g----~~~~-~s~~e~~---------~~~dvvi 62 (163)
T PF03446_consen 3 KIGFIGL--GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAE----AG----AEVA-DSPAEAA---------EQADVVI 62 (163)
T ss_dssp EEEEE----SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH----TT----EEEE-SSHHHHH---------HHBSEEE
T ss_pred EEEEEch--HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHH----hh----hhhh-hhhhhHh---------hcccceE
Confidence 4556666 667777766643 35689999999866544332 22 2322 3333332 3459998
Q ss_pred EeCC-ccchHHHHHH--HHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEEeecCCc
Q 023645 201 VDAE-KRMYQEYFEL--LLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDG 272 (279)
Q Consensus 201 id~~-~~~~~~~l~~--~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G 272 (279)
+-.. .....+.+.. +.+.|++|.+++-.....+.. .+++.+.+. ..++..+-.|+..|
T Consensus 63 ~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~-------------~~~~~~~~~-~~g~~~vdapV~Gg 123 (163)
T PF03446_consen 63 LCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPET-------------SRELAERLA-AKGVRYVDAPVSGG 123 (163)
T ss_dssp E-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHH-------------HHHHHHHHH-HTTEEEEEEEEESH
T ss_pred eecccchhhhhhhhhhHHhhccccceEEEecCCcchhh-------------hhhhhhhhh-hccceeeeeeeecc
Confidence 7654 4556677777 888888887777544433222 344555553 45577788887443
No 443
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=81.61 E-value=1.3 Score=38.92 Aligned_cols=38 Identities=13% Similarity=0.137 Sum_probs=30.3
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHH
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSL 157 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~ 157 (279)
..+++|||+|||.|.-.+...... ...+...|.+.+.+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~--~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG--AVSVHFQDFNAEVL 152 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc--cceeeeEecchhhe
Confidence 467899999999999888877653 26788888887766
No 444
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=81.25 E-value=21 Score=30.60 Aligned_cols=81 Identities=16% Similarity=0.132 Sum_probs=44.7
Q ss_pred CCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCCh-------------------hHHHHHHHHHHHhCCCCcEEEEEc
Q 023645 119 GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDA-------------------RSLEVAKKYYERAGVSHKVKIKHG 178 (279)
Q Consensus 119 ~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~-------------------~~~~~a~~~~~~~g~~~~v~~~~g 178 (279)
...+|+-+||| .|......+-..+ -++++.+|.+. ...+.+++.+...+..-+++.+..
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~G-Vg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~ 88 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSG-VGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE 88 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee
Confidence 35589999996 4444433332333 36899888653 234555666666554434555544
Q ss_pred Chh-hHHHHHHhCCCCCcEEEEEEeCC
Q 023645 179 LAA-DSLKALILNGEASSYDFAFVDAE 204 (279)
Q Consensus 179 d~~-~~l~~~~~~~~~~~fDlI~id~~ 204 (279)
... +....+. ...||+|+.-.+
T Consensus 89 ~i~~~~~~~l~----~~~~D~VvdaiD 111 (231)
T cd00755 89 FLTPDNSEDLL----GGDPDFVVDAID 111 (231)
T ss_pred ecCHhHHHHHh----cCCCCEEEEcCC
Confidence 332 1223332 346999886443
No 445
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=81.13 E-value=23 Score=30.71 Aligned_cols=100 Identities=18% Similarity=0.335 Sum_probs=57.8
Q ss_pred HhhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645 115 VQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (279)
Q Consensus 115 ~~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~ 192 (279)
....++.+|+-.|| +.|..+..+++.. +.+++.++.+++..+.+++ .|...-+.....+..+.+.... .
T Consensus 135 ~~~~~~~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~~---~ 205 (323)
T cd08241 135 ARLQPGETVLVLGAAGGVGLAAVQLAKAL--GARVIAAASSEEKLALARA----LGADHVIDYRDPDLRERVKALT---G 205 (323)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHh--CCEEEEEeCCHHHHHHHHH----cCCceeeecCCccHHHHHHHHc---C
Confidence 33456789999997 3455556666654 4689999998877666543 3432212222222222222221 1
Q ss_pred CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
...+|+++..... ..+..+.+.++++|.++.
T Consensus 206 ~~~~d~v~~~~g~----~~~~~~~~~~~~~g~~v~ 236 (323)
T cd08241 206 GRGVDVVYDPVGG----DVFEASLRSLAWGGRLLV 236 (323)
T ss_pred CCCcEEEEECccH----HHHHHHHHhhccCCEEEE
Confidence 3469988754332 245567788899998875
No 446
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=81.13 E-value=48 Score=31.00 Aligned_cols=118 Identities=16% Similarity=0.193 Sum_probs=71.6
Q ss_pred HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeC-ChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC
Q 023645 113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACER-DARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG 191 (279)
Q Consensus 113 ~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~-s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~ 191 (279)
.+.....+..++-.-+|...++..+...+|.+.++++.+- --.-....++...+.|.. .+++..+-.+.+....
T Consensus 85 ~iaal~ga~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie--~~~vd~~~~~~~~~~i--- 159 (409)
T KOG0053|consen 85 GIAALEGAAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGE--GDFVDVDDLKKILKAI--- 159 (409)
T ss_pred HHHHHhCCceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCce--eeeechhhHHHHHHhh---
Confidence 4444555667888888888888888777887888888762 234456666666666653 5666554444444332
Q ss_pred CCCcEEEEEEeCCcc--chHHHHHHHHccC-CCCcEEEEeCCCCCCcc
Q 023645 192 EASSYDFAFVDAEKR--MYQEYFELLLQLI-RVGGIIVIDNVLWHGKV 236 (279)
Q Consensus 192 ~~~~fDlI~id~~~~--~~~~~l~~~~~~L-k~gG~lv~dd~~~~g~~ 236 (279)
....++||+-.+.. .....++.+.++- ++|-.+|+||.+-+.-.
T Consensus 160 -~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~ 206 (409)
T KOG0053|consen 160 -KENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYN 206 (409)
T ss_pred -ccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccc
Confidence 34689999875411 1112233333332 56667788888765533
No 447
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=81.02 E-value=21 Score=31.89 Aligned_cols=100 Identities=19% Similarity=0.189 Sum_probs=57.8
Q ss_pred HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE-cChhhHHHHHHhCCC
Q 023645 115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNGE 192 (279)
Q Consensus 115 ~~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~-gd~~~~l~~~~~~~~ 192 (279)
....++.+||-.|+| .|..+..+++.. +.++++++.+++..+.+++ .|...-+.... .+..+.+..+.
T Consensus 161 ~~~~~~~~vlV~g~g~vg~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~---- 230 (345)
T cd08260 161 ARVKPGEWVAVHGCGGVGLSAVMIASAL--GARVIAVDIDDDKLELARE----LGAVATVNASEVEDVAAAVRDLT---- 230 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHH----hCCCEEEccccchhHHHHHHHHh----
Confidence 344566788888853 344445566654 4789999998887766643 35422122222 22222222221
Q ss_pred CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
.+.+|++|..... ...+....+.|+++|.++.
T Consensus 231 ~~~~d~vi~~~g~---~~~~~~~~~~l~~~g~~i~ 262 (345)
T cd08260 231 GGGAHVSVDALGI---PETCRNSVASLRKRGRHVQ 262 (345)
T ss_pred CCCCCEEEEcCCC---HHHHHHHHHHhhcCCEEEE
Confidence 2379988843222 2356677888999998875
No 448
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=80.72 E-value=14 Score=34.64 Aligned_cols=95 Identities=15% Similarity=0.096 Sum_probs=56.9
Q ss_pred EEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645 122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (279)
Q Consensus 122 ~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~ 200 (279)
+|+-+|+ |..+..+++.+. .+..|+.+|.+++.++.+++. . .+.++.||+.+.. .+... +-..+|.|+
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~---~----~~~~~~gd~~~~~-~l~~~-~~~~a~~vi 70 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR---L----DVRTVVGNGSSPD-VLREA-GAEDADLLI 70 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh---c----CEEEEEeCCCCHH-HHHHc-CCCcCCEEE
Confidence 5677766 888888888664 256899999999876655431 1 2778888886421 11111 135788888
Q ss_pred EeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 201 VDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 201 id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
+...............+.+.|.-.+++
T Consensus 71 ~~~~~~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 71 AVTDSDETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred EecCChHHHHHHHHHHHHhcCCCeEEE
Confidence 765433333334444455534433333
No 449
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=80.68 E-value=9.9 Score=33.80 Aligned_cols=79 Identities=18% Similarity=0.213 Sum_probs=48.7
Q ss_pred CCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCCCCCcE
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSY 196 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~~~~~f 196 (279)
+++||-.| |+|..+..+++.+- .+.+|+++..++.............+...+++++.+|..+. +.... ..+
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~-----~~~ 78 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAI-----DGC 78 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHH-----cCC
Confidence 46888888 67888888887653 35688877776654333322222223334688999998753 23332 357
Q ss_pred EEEEEeCC
Q 023645 197 DFAFVDAE 204 (279)
Q Consensus 197 DlI~id~~ 204 (279)
|.||..+.
T Consensus 79 d~vih~A~ 86 (325)
T PLN02989 79 ETVFHTAS 86 (325)
T ss_pred CEEEEeCC
Confidence 88886553
No 450
>PLN02494 adenosylhomocysteinase
Probab=80.60 E-value=11 Score=35.91 Aligned_cols=88 Identities=13% Similarity=0.077 Sum_probs=52.6
Q ss_pred cCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 118 ~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
..+++|+-+|+|. |......++.+ +.+|+.+|.++.....+.. .|. .+. +..+.+ ...
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~----~G~----~vv--~leEal---------~~A 310 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALM----EGY----QVL--TLEDVV---------SEA 310 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHh----cCC----eec--cHHHHH---------hhC
Confidence 4578999999873 43444444444 4799999999865433322 232 111 222221 356
Q ss_pred EEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (279)
Q Consensus 197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d 228 (279)
|+|+....... -.....+..+|+||+|+--
T Consensus 311 DVVI~tTGt~~--vI~~e~L~~MK~GAiLiNv 340 (477)
T PLN02494 311 DIFVTTTGNKD--IIMVDHMRKMKNNAIVCNI 340 (477)
T ss_pred CEEEECCCCcc--chHHHHHhcCCCCCEEEEc
Confidence 98887443322 1236677889999998863
No 451
>PRK07063 short chain dehydrogenase; Provisional
Probab=80.58 E-value=17 Score=30.99 Aligned_cols=85 Identities=18% Similarity=0.123 Sum_probs=52.8
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCC--CC
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EA 193 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~--~~ 193 (279)
.++++|-.|+. |..+..+++.+. .+.+|+.++.+++..+...+.+...+...++.++.+|..+. +..+..+- .-
T Consensus 6 ~~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 6 AGKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 46789988865 556666666553 35789999998887766666665422334578888887542 22211100 02
Q ss_pred CcEEEEEEeCC
Q 023645 194 SSYDFAFVDAE 204 (279)
Q Consensus 194 ~~fDlI~id~~ 204 (279)
+.+|.++..+.
T Consensus 85 g~id~li~~ag 95 (260)
T PRK07063 85 GPLDVLVNNAG 95 (260)
T ss_pred CCCcEEEECCC
Confidence 57899887653
No 452
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=80.48 E-value=33 Score=31.71 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=32.2
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHC------CCCCEEEEEeC----ChhHHHHHHHHHH
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVL------PESGCLVACER----DARSLEVAKKYYE 165 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~------~~~~~v~~iD~----s~~~~~~a~~~~~ 165 (279)
.+.-+|+|+|.|.|.-=..|.+.+ |+.-+||+|+. +...++.+.+++.
T Consensus 109 ~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~ 166 (374)
T PF03514_consen 109 ERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLA 166 (374)
T ss_pred CcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHH
Confidence 345589999999997444444433 23458999999 6666666655543
No 453
>PRK06914 short chain dehydrogenase; Provisional
Probab=80.42 E-value=37 Score=29.25 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=51.1
Q ss_pred CCEEEEEcCccCHHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHH--HH---HHhCCCC
Q 023645 120 AQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KA---LILNGEA 193 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l--~~---~~~~~~~ 193 (279)
.+++|-.|+ +|..+..+++.+ ..+.+|++++.+++..+...+.....+...++.++.+|..+.- .. .... -
T Consensus 3 ~k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~--~ 79 (280)
T PRK06914 3 KKIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKE--I 79 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHh--c
Confidence 357888884 566676666554 3356899999888766655555554444456889999886531 11 1111 2
Q ss_pred CcEEEEEEeC
Q 023645 194 SSYDFAFVDA 203 (279)
Q Consensus 194 ~~fDlI~id~ 203 (279)
++.|.|+..+
T Consensus 80 ~~id~vv~~a 89 (280)
T PRK06914 80 GRIDLLVNNA 89 (280)
T ss_pred CCeeEEEECC
Confidence 5789988764
No 454
>PRK05939 hypothetical protein; Provisional
Probab=80.42 E-value=29 Score=32.27 Aligned_cols=125 Identities=17% Similarity=0.137 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhH-HHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645 104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARS-LEVAKKYYERAGVSHKVKIKHGLAAD 182 (279)
Q Consensus 104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~-~~~a~~~~~~~g~~~~v~~~~gd~~~ 182 (279)
+|....+=..++........+-+.+|.+.....+...+.++.+|+..+..-.. .... ..++..|. .+.++..+-.+
T Consensus 46 ~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~-~~l~~~G~--~v~~v~~~d~e 122 (397)
T PRK05939 46 TPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLF-GTLRGLGV--EVTMVDATDVQ 122 (397)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHH-HHHHhcCC--EEEEECCCCHH
Confidence 45555555556666666677777777666555554445556678776653221 1222 23444453 24444322122
Q ss_pred HHHHHHhCCCCCcEEEEEEeCC--ccchHHHHHHHHccCCC-CcEEEEeCCCCCCc
Q 023645 183 SLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVLWHGK 235 (279)
Q Consensus 183 ~l~~~~~~~~~~~fDlI~id~~--~~~~~~~l~~~~~~Lk~-gG~lv~dd~~~~g~ 235 (279)
.+.... ..+-.+|++... .......++.+.++.+. |..+++|++.-.+.
T Consensus 123 ~l~~~l----~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~ 174 (397)
T PRK05939 123 NVAAAI----RPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPW 174 (397)
T ss_pred HHHHhC----CCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCccccc
Confidence 333322 244567877643 22223445556555554 45666777654443
No 455
>PRK10083 putative oxidoreductase; Provisional
Probab=80.25 E-value=17 Score=32.44 Aligned_cols=100 Identities=13% Similarity=0.125 Sum_probs=53.8
Q ss_pred HhhcCCCEEEEEcCc-cCHHHHHHHHH-CCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645 115 VQILGAQRCIEVGVY-TGYSSLAIALV-LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (279)
Q Consensus 115 ~~~~~~~~VLEiG~G-~G~~t~~la~~-~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~ 192 (279)
....++.+||=.|+| .|..+..+++. ++ -..+++++.+++..+.+++ .|...-+.....+..+.+. ..
T Consensus 156 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~---~~-- 225 (339)
T PRK10083 156 TGPTEQDVALIYGAGPVGLTIVQVLKGVYN-VKAVIVADRIDERLALAKE----SGADWVINNAQEPLGEALE---EK-- 225 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHh---cC--
Confidence 345567788888853 12233344553 23 2358889998887766654 3442212222222222221 11
Q ss_pred CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
...+|+||--... ...+....+.|+++|.++.
T Consensus 226 g~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~ 257 (339)
T PRK10083 226 GIKPTLIIDAACH---PSILEEAVTLASPAARIVL 257 (339)
T ss_pred CCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEE
Confidence 1235666543221 2356777889999999886
No 456
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=80.15 E-value=13 Score=34.81 Aligned_cols=96 Identities=19% Similarity=0.147 Sum_probs=57.3
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl 198 (279)
.++|+=+|+ |..+..+++.+.. +..|+.+|.+++.++..++.. ..+.++.||+.+. ..+... +-..+|.
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~-~~L~~~-~~~~a~~ 300 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQ-ELLEEE-GIDEADA 300 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCH-HHHHhc-CCccCCE
Confidence 467888777 7777777776643 568999999998876655532 1367889998643 222111 1467888
Q ss_pred EEEeCCccchHHHHHHHHccCCCCcEE
Q 023645 199 AFVDAEKRMYQEYFELLLQLIRVGGII 225 (279)
Q Consensus 199 I~id~~~~~~~~~l~~~~~~Lk~gG~l 225 (279)
|++-.+.....-....+.+.+.+.-++
T Consensus 301 vi~~~~~~~~n~~~~~~~~~~~~~~ii 327 (453)
T PRK09496 301 FIALTNDDEANILSSLLAKRLGAKKVI 327 (453)
T ss_pred EEECCCCcHHHHHHHHHHHHhCCCeEE
Confidence 887544322222223333445444333
No 457
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=79.99 E-value=16 Score=33.17 Aligned_cols=101 Identities=20% Similarity=0.350 Sum_probs=57.9
Q ss_pred HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645 115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (279)
Q Consensus 115 ~~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~ 192 (279)
....++.+||-.|+| .|..+..+++..+ . +|++++.+++..+.+++ .|...-+.....+..+.+..+. +
T Consensus 178 ~~~~~g~~vLI~g~g~vG~a~i~lak~~G--~~~Vi~~~~~~~~~~~~~~----~g~~~vv~~~~~~~~~~l~~~~---~ 248 (363)
T cd08279 178 ARVRPGDTVAVIGCGGVGLNAIQGARIAG--ASRIIAVDPVPEKLELARR----FGATHTVNASEDDAVEAVRDLT---D 248 (363)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEEcCCHHHHHHHHH----hCCeEEeCCCCccHHHHHHHHc---C
Confidence 334566788888764 4556666777654 5 48999888877665532 3432111111112222222221 1
Q ss_pred CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
...+|+++-.... ...+..+.+.|+++|.++.
T Consensus 249 ~~~vd~vld~~~~---~~~~~~~~~~l~~~G~~v~ 280 (363)
T cd08279 249 GRGADYAFEAVGR---AATIRQALAMTRKGGTAVV 280 (363)
T ss_pred CCCCCEEEEcCCC---hHHHHHHHHHhhcCCeEEE
Confidence 3568987743322 2456777888999998875
No 458
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=79.69 E-value=14 Score=34.62 Aligned_cols=87 Identities=11% Similarity=0.101 Sum_probs=52.5
Q ss_pred cCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 118 ~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
..+++|+-+|+|. |......++.+ +++|+.+|.++.....+.. .|. .+. +..+. + ...
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~~----~G~----~v~--~leea---l------~~a 251 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEAAM----DGF----RVM--TMEEA---A------KIG 251 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHHHh----cCC----EeC--CHHHH---H------hcC
Confidence 4688999999975 44444455554 4799999999865433322 232 221 22221 1 346
Q ss_pred EEEEEeCCccchHHHHH-HHHccCCCCcEEEEe
Q 023645 197 DFAFVDAEKRMYQEYFE-LLLQLIRVGGIIVID 228 (279)
Q Consensus 197 DlI~id~~~~~~~~~l~-~~~~~Lk~gG~lv~d 228 (279)
|+||..... ...+. .....+|+|++++.-
T Consensus 252 DVVItaTG~---~~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 252 DIFITATGN---KDVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred CEEEECCCC---HHHHHHHHHhcCCCCcEEEEE
Confidence 888764432 33443 467889999988864
No 459
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=79.66 E-value=8.2 Score=34.41 Aligned_cols=77 Identities=19% Similarity=0.144 Sum_probs=45.2
Q ss_pred EEEcCccCHHHHHHHHHCCCC--CEEEEEeCChhHHHHHHHHHHHhCCCCcEE----EEEcChhhH--HHHHHhCCCCCc
Q 023645 124 IEVGVYTGYSSLAIALVLPES--GCLVACERDARSLEVAKKYYERAGVSHKVK----IKHGLAADS--LKALILNGEASS 195 (279)
Q Consensus 124 LEiG~G~G~~t~~la~~~~~~--~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~----~~~gd~~~~--l~~~~~~~~~~~ 195 (279)
|-.| |+|+++..+++.+-.. .+++.+|.++..+-..++.+.......++. .+.+|..+. +..... ...
T Consensus 2 LVTG-a~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~---~~~ 77 (293)
T PF02719_consen 2 LVTG-AGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFE---EYK 77 (293)
T ss_dssp EEET-TTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT-----T
T ss_pred EEEc-cccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHh---hcC
Confidence 4444 6799999988875322 589999999988877777775332222344 458898763 333321 358
Q ss_pred EEEEEEeCC
Q 023645 196 YDFAFVDAE 204 (279)
Q Consensus 196 fDlI~id~~ 204 (279)
+|+||.-+.
T Consensus 78 pdiVfHaAA 86 (293)
T PF02719_consen 78 PDIVFHAAA 86 (293)
T ss_dssp -SEEEE---
T ss_pred CCEEEEChh
Confidence 999997665
No 460
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=79.60 E-value=15 Score=28.28 Aligned_cols=88 Identities=14% Similarity=0.149 Sum_probs=50.8
Q ss_pred CEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCCh-------------------hHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645 121 QRCIEVGVY-TGYSSLAIALVLPESGCLVACERDA-------------------RSLEVAKKYYERAGVSHKVKIKHGLA 180 (279)
Q Consensus 121 ~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~-------------------~~~~~a~~~~~~~g~~~~v~~~~gd~ 180 (279)
.+|+=+||| .|......+...+ -++++-+|.+. ...+.+++.+.+....-+++.+..++
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~G-v~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~ 81 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSG-VGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKI 81 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHT-TSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHC
T ss_pred CEEEEECcCHHHHHHHHHHHHhC-CCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeeccc
Confidence 589999996 3443333222222 36888888532 23567778888766555677777766
Q ss_pred -hhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHH
Q 023645 181 -ADSLKALILNGEASSYDFAFVDAEKRMYQEYFEL 214 (279)
Q Consensus 181 -~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~ 214 (279)
.+....+. ..+|+||...+.......+..
T Consensus 82 ~~~~~~~~~-----~~~d~vi~~~d~~~~~~~l~~ 111 (135)
T PF00899_consen 82 DEENIEELL-----KDYDIVIDCVDSLAARLLLNE 111 (135)
T ss_dssp SHHHHHHHH-----HTSSEEEEESSSHHHHHHHHH
T ss_pred ccccccccc-----cCCCEEEEecCCHHHHHHHHH
Confidence 23344442 478999876554333333333
No 461
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=79.51 E-value=7.6 Score=31.69 Aligned_cols=95 Identities=16% Similarity=0.143 Sum_probs=52.1
Q ss_pred cCCCEEEEEcCccCHHHHHH---HHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645 118 LGAQRCIEVGVYTGYSSLAI---ALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~l---a~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~ 194 (279)
..+++|.=||+| ..+..+ ++.+ +.+|+++|.+..... .....+ + ...+..+.+ .
T Consensus 34 l~g~tvgIiG~G--~IG~~vA~~l~~f--G~~V~~~d~~~~~~~----~~~~~~----~--~~~~l~ell---------~ 90 (178)
T PF02826_consen 34 LRGKTVGIIGYG--RIGRAVARRLKAF--GMRVIGYDRSPKPEE----GADEFG----V--EYVSLDELL---------A 90 (178)
T ss_dssp STTSEEEEESTS--HHHHHHHHHHHHT--T-EEEEEESSCHHHH----HHHHTT----E--EESSHHHHH---------H
T ss_pred cCCCEEEEEEEc--CCcCeEeeeeecC--CceeEEecccCChhh----hccccc----c--eeeehhhhc---------c
Confidence 467899999885 455444 4445 479999999987654 122111 2 223444433 3
Q ss_pred cEEEEEEeCCcc-chHH-HHHHHHccCCCCcEEEEeCCCCCCcccC
Q 023645 195 SYDFAFVDAEKR-MYQE-YFELLLQLIRVGGIIVIDNVLWHGKVAD 238 (279)
Q Consensus 195 ~fDlI~id~~~~-~~~~-~l~~~~~~Lk~gG~lv~dd~~~~g~~~~ 238 (279)
..|+|++..+.. .... +=+..+..+|+|.+||= + -+|.+.+
T Consensus 91 ~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN--~-aRG~~vd 133 (178)
T PF02826_consen 91 QADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVN--V-ARGELVD 133 (178)
T ss_dssp H-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEE--S-SSGGGB-
T ss_pred hhhhhhhhhccccccceeeeeeeeeccccceEEEe--c-cchhhhh
Confidence 578998876521 1111 12345678888876663 3 3455444
No 462
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=79.48 E-value=7.2 Score=38.64 Aligned_cols=95 Identities=17% Similarity=0.105 Sum_probs=55.4
Q ss_pred CEEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645 121 QRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (279)
Q Consensus 121 ~~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI 199 (279)
.+|+=+|+ |..+..+++.+.. +..++.+|.|++.++.+++ .| ..++.||+.+. .-+... +-++.|++
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~-~~L~~a-gi~~A~~v 468 (621)
T PRK03562 401 PRVIIAGF--GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK----FG----MKVFYGDATRM-DLLESA-GAAKAEVL 468 (621)
T ss_pred CcEEEEec--ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----cC----CeEEEEeCCCH-HHHHhc-CCCcCCEE
Confidence 46777666 6666666665432 4589999999998887755 22 57888998653 112111 13577888
Q ss_pred EEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 200 FVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 200 ~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
++..+........-...+.+.|.-.++.
T Consensus 469 vv~~~d~~~n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 469 INAIDDPQTSLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred EEEeCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 7654432222222223344455544443
No 463
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=79.45 E-value=22 Score=31.30 Aligned_cols=98 Identities=18% Similarity=0.186 Sum_probs=57.4
Q ss_pred hcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645 117 ILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (279)
Q Consensus 117 ~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~ 194 (279)
..++.+||=.|. +.|..+..+++.. +.++++++.++...+.+++. .|...-+.....+..+.+... . .+
T Consensus 143 ~~~~~~vlI~g~~g~ig~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~v~~~---~-~~ 213 (329)
T cd05288 143 PKPGETVVVSAAAGAVGSVVGQIAKLL--GARVVGIAGSDEKCRWLVEE---LGFDAAINYKTPDLAEALKEA---A-PD 213 (329)
T ss_pred CCCCCEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhh---cCCceEEecCChhHHHHHHHh---c-cC
Confidence 445678888874 3566666677765 46899999888766665543 233211222111222222222 1 25
Q ss_pred cEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
.+|+++-.... ..++.+.+.|+++|.++.
T Consensus 214 ~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~ 242 (329)
T cd05288 214 GIDVYFDNVGG----EILDAALTLLNKGGRIAL 242 (329)
T ss_pred CceEEEEcchH----HHHHHHHHhcCCCceEEE
Confidence 69988743221 356777888999998874
No 464
>PRK07109 short chain dehydrogenase; Provisional
Probab=79.26 E-value=33 Score=30.93 Aligned_cols=83 Identities=20% Similarity=0.124 Sum_probs=52.0
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhC--CCC
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GEA 193 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~--~~~ 193 (279)
..++||-.|+ +|..+..+++.+. .+.+|+.++.+++.++...+.++..+ .++.++.+|..+. +....+. ..-
T Consensus 7 ~~k~vlITGa-s~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 7 GRQVVVITGA-SAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 4567888885 5566766666542 35799999999887766666665544 3578888887542 2221110 012
Q ss_pred CcEEEEEEeCC
Q 023645 194 SSYDFAFVDAE 204 (279)
Q Consensus 194 ~~fDlI~id~~ 204 (279)
+++|.++.++.
T Consensus 84 g~iD~lInnAg 94 (334)
T PRK07109 84 GPIDTWVNNAM 94 (334)
T ss_pred CCCCEEEECCC
Confidence 57899887653
No 465
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=79.06 E-value=28 Score=30.59 Aligned_cols=99 Identities=11% Similarity=0.129 Sum_probs=58.0
Q ss_pred hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC-hhhHHHHHHhCCC
Q 023645 116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL-AADSLKALILNGE 192 (279)
Q Consensus 116 ~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd-~~~~l~~~~~~~~ 192 (279)
...++.+||=.|+ +.|..+..+++.. +.+++.+..+++..+.+++ .|...-+.....+ ..+.+.... .
T Consensus 137 ~~~~~~~vlI~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~---~ 207 (334)
T PTZ00354 137 DVKKGQSVLIHAGASGVGTAAAQLAEKY--GAATIITTSSEEKVDFCKK----LAAIILIRYPDEEGFAPKVKKLT---G 207 (334)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEecCChhHHHHHHHHHh---C
Confidence 3445678888874 4666777778776 4676778888877666643 3442111111112 222222221 1
Q ss_pred CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
...+|+++-... ...+..+.+.|+++|.++.
T Consensus 208 ~~~~d~~i~~~~----~~~~~~~~~~l~~~g~~i~ 238 (334)
T PTZ00354 208 EKGVNLVLDCVG----GSYLSETAEVLAVDGKWIV 238 (334)
T ss_pred CCCceEEEECCc----hHHHHHHHHHhccCCeEEE
Confidence 356999884332 2456778889999999885
No 466
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=79.04 E-value=15 Score=35.66 Aligned_cols=84 Identities=14% Similarity=0.140 Sum_probs=59.2
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCC--CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCCC
Q 023645 117 ILGAQRCIEVGVYTGYSSLAIALVLPE--SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGE 192 (279)
Q Consensus 117 ~~~~~~VLEiG~G~G~~t~~la~~~~~--~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~~ 192 (279)
...+++||--| |+|+++..+++.+-. -.+++-+|.++..+......+...-...++.+..||..+. +.....
T Consensus 247 ~~~gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~--- 322 (588)
T COG1086 247 MLTGKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAME--- 322 (588)
T ss_pred HcCCCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHh---
Confidence 45678999887 568888888776421 2589999999988877777776532245689999999763 333322
Q ss_pred CCcEEEEEEeCC
Q 023645 193 ASSYDFAFVDAE 204 (279)
Q Consensus 193 ~~~fDlI~id~~ 204 (279)
.-+.|.||..+.
T Consensus 323 ~~kvd~VfHAAA 334 (588)
T COG1086 323 GHKVDIVFHAAA 334 (588)
T ss_pred cCCCceEEEhhh
Confidence 357999997654
No 467
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=79.03 E-value=5 Score=37.22 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=48.2
Q ss_pred hCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEE-eCC----ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645 167 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV-DAE----KRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234 (279)
Q Consensus 167 ~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~i-d~~----~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g 234 (279)
.+. +++++++++..+.+.... ++++|.+++ |+. .+...+.++.+.+.++|||.+++-+.....
T Consensus 272 ~~~-drv~i~t~si~~~L~~~~----~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 272 ARL-DRVRIHTDSIEEVLRRLP----PGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred cCC-CeEEEEeccHHHHHHhCC----CCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 345 689999999998887652 588998764 432 455677888899999999999997766443
No 468
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=79.01 E-value=20 Score=32.03 Aligned_cols=76 Identities=13% Similarity=0.123 Sum_probs=44.2
Q ss_pred EEEEEcCccCHHHHHHHHHC--CCCCEEEEEeCCh-------------------hHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645 122 RCIEVGVYTGYSSLAIALVL--PESGCLVACERDA-------------------RSLEVAKKYYERAGVSHKVKIKHGLA 180 (279)
Q Consensus 122 ~VLEiG~G~G~~t~~la~~~--~~~~~v~~iD~s~-------------------~~~~~a~~~~~~~g~~~~v~~~~gd~ 180 (279)
+||-+||| ..+..+++.+ ..-++++.+|.+. ...+.|.+.+++.+..-+++.+.++.
T Consensus 1 kVlVVGaG--GlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i 78 (291)
T cd01488 1 KILVIGAG--GLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKI 78 (291)
T ss_pred CEEEECCC--HHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEeccc
Confidence 47888886 3333333322 1136888888532 23455666676655544567776666
Q ss_pred hhHHHHHHhCCCCCcEEEEEEeCC
Q 023645 181 ADSLKALILNGEASSYDFAFVDAE 204 (279)
Q Consensus 181 ~~~l~~~~~~~~~~~fDlI~id~~ 204 (279)
.+....+ -.+||+|+...+
T Consensus 79 ~~~~~~f-----~~~fdvVi~alD 97 (291)
T cd01488 79 QDKDEEF-----YRQFNIIICGLD 97 (291)
T ss_pred CchhHHH-----hcCCCEEEECCC
Confidence 5543333 367999987544
No 469
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=78.98 E-value=16 Score=32.47 Aligned_cols=100 Identities=17% Similarity=0.236 Sum_probs=58.3
Q ss_pred HHhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCE-EEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC
Q 023645 114 LVQILGAQRCIEVGVY-TGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG 191 (279)
Q Consensus 114 l~~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~ 191 (279)
.+...++.+||-+|+| .|..+..+++.. +.+ ++.++.+++..+.+++ .+.. .++..+-.+...... .
T Consensus 154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~--~ 222 (334)
T cd08234 154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLN--GASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQKE--D 222 (334)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHHH--h
Confidence 3445567899999864 255556667665 345 8889998887766543 2332 222221111111110 1
Q ss_pred CCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
....+|+++..... ...+..+.+.|+++|.++.
T Consensus 223 ~~~~vd~v~~~~~~---~~~~~~~~~~l~~~G~~v~ 255 (334)
T cd08234 223 NPYGFDVVIEATGV---PKTLEQAIEYARRGGTVLV 255 (334)
T ss_pred cCCCCcEEEECCCC---hHHHHHHHHHHhcCCEEEE
Confidence 14579999854322 2456777888999998875
No 470
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=78.88 E-value=38 Score=30.27 Aligned_cols=97 Identities=19% Similarity=0.285 Sum_probs=54.2
Q ss_pred cCCCEEEEEcCcc-CHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645 118 LGAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (279)
Q Consensus 118 ~~~~~VLEiG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~ 195 (279)
.++.+||-.|+|. |..+..+++..+ . +|++++.+++..+.+++ .|...-+.....+.. .+.... ..+.
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G--~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-~~~~~~---~~~~ 231 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAG--ASLVIASDPNPYRLELAKK----MGADVVINPREEDVV-EVKSVT---DGTG 231 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----hCcceeeCcccccHH-HHHHHc---CCCC
Confidence 4566777777643 455666777653 5 68888777766554443 343221111122222 222221 1357
Q ss_pred EEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 196 fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
+|+||-.... ......+.+.|+++|.++.
T Consensus 232 vd~vld~~g~---~~~~~~~~~~l~~~G~~v~ 260 (341)
T cd05281 232 VDVVLEMSGN---PKAIEQGLKALTPGGRVSI 260 (341)
T ss_pred CCEEEECCCC---HHHHHHHHHHhccCCEEEE
Confidence 8998854332 2345677888999999875
No 471
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=78.79 E-value=21 Score=26.49 Aligned_cols=93 Identities=14% Similarity=0.102 Sum_probs=53.9
Q ss_pred EEEEEcCccCHHHHH-HHHHCCCCCEEE-EEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645 122 RCIEVGVYTGYSSLA-IALVLPESGCLV-ACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (279)
Q Consensus 122 ~VLEiG~G~G~~t~~-la~~~~~~~~v~-~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI 199 (279)
+|.=||+|....... -.....++.+++ .+|.+++..+.+.+ ..+. . ...|..+.+. ...+|+|
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~---~~~~----~-~~~~~~~ll~-------~~~~D~V 66 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAE---KYGI----P-VYTDLEELLA-------DEDVDAV 66 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHH---HTTS----E-EESSHHHHHH-------HTTESEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHH---Hhcc----c-chhHHHHHHH-------hhcCCEE
Confidence 577788865432222 122232355665 57888876655433 3333 3 4555555554 3579999
Q ss_pred EEeCCccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645 200 FVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLW 232 (279)
Q Consensus 200 ~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~ 232 (279)
++..+.....++. ...|+.|--++++-.+.
T Consensus 67 ~I~tp~~~h~~~~---~~~l~~g~~v~~EKP~~ 96 (120)
T PF01408_consen 67 IIATPPSSHAEIA---KKALEAGKHVLVEKPLA 96 (120)
T ss_dssp EEESSGGGHHHHH---HHHHHTTSEEEEESSSS
T ss_pred EEecCCcchHHHH---HHHHHcCCEEEEEcCCc
Confidence 9988765544444 44556676777775543
No 472
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=78.75 E-value=53 Score=30.04 Aligned_cols=118 Identities=9% Similarity=0.191 Sum_probs=56.1
Q ss_pred HHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChh-HHHHHHHHHHHhCCCCcEEEEEcChhhHHHH
Q 023645 108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHGLAADSLKA 186 (279)
Q Consensus 108 ~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~-~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~ 186 (279)
..+-..++........+=.++|+......+ ..+.++.+|+..+..-. ........++..|. ++.++..+-.+.+..
T Consensus 55 ~~le~~la~l~g~~~~~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~--~v~~vd~~d~~~l~~ 131 (366)
T PRK08247 55 GVLEQAIADLEGGDQGFACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKKWNV--RFVYVNTASLKAIEQ 131 (366)
T ss_pred HHHHHHHHHHhCCCcEEEEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhccCc--eEEEECCCCHHHHHH
Confidence 333334444444444455555555444433 23444567777664332 23333444444443 234433221222322
Q ss_pred HHhCCCCCcEEEEEEeCC--ccchHHHHHHHHccCCC-CcEEEEeCCCC
Q 023645 187 LILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVLW 232 (279)
Q Consensus 187 ~~~~~~~~~fDlI~id~~--~~~~~~~l~~~~~~Lk~-gG~lv~dd~~~ 232 (279)
.. ....++|++..+ +......++.+..+.+. |..+++|++..
T Consensus 132 ~i----~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~ 176 (366)
T PRK08247 132 AI----TPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFY 176 (366)
T ss_pred hc----ccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 21 235678887543 22233445566555554 56777888763
No 473
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=78.74 E-value=15 Score=34.57 Aligned_cols=87 Identities=13% Similarity=0.107 Sum_probs=51.6
Q ss_pred cCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 118 ~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
..+++|+-+|+|. |......++.+ +.+|+.+|.++.....+.. .|. ++. +.. .. ....
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~--Ga~ViV~d~dp~ra~~A~~----~G~----~v~--~l~----ea-----l~~a 268 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGL--GARVIVTEVDPICALQAAM----DGF----RVM--TME----EA-----AELG 268 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCchhhHHHHh----cCC----Eec--CHH----HH-----HhCC
Confidence 3678999999863 33333344444 4699999999865433322 132 221 222 22 1457
Q ss_pred EEEEEeCCccchHHHHH-HHHccCCCCcEEEEe
Q 023645 197 DFAFVDAEKRMYQEYFE-LLLQLIRVGGIIVID 228 (279)
Q Consensus 197 DlI~id~~~~~~~~~l~-~~~~~Lk~gG~lv~d 228 (279)
|+||..... ...+. .....+|+|++++.-
T Consensus 269 DVVI~aTG~---~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 269 DIFVTATGN---KDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred CEEEECCCC---HHHHHHHHHhcCCCCCEEEEc
Confidence 988765432 23444 567889999988763
No 474
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=78.68 E-value=23 Score=33.05 Aligned_cols=125 Identities=18% Similarity=0.202 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCC-hhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645 104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERD-ARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (279)
Q Consensus 104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s-~~~~~~a~~~~~~~g~~~~v~~~~gd~~~ 182 (279)
+|....+-..++.......++-+++|++.....+...+.++.+|+..+.. ........+.++..|. .+.++..+-.+
T Consensus 69 ~p~~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~--~v~~vd~~d~~ 146 (403)
T PRK07810 69 NPTVSMFEERLRLIEGAEACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGV--ETVFVDGEDLS 146 (403)
T ss_pred CchHHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCc--EEEEECCCCHH
Confidence 44455666666776677788888888877666554445556677766532 2233344444555554 24555332222
Q ss_pred HHHHHHhCCCCCcEEEEEEeCCc--cchHHHHHHHHccCCC-CcEEEEeCCCCCC
Q 023645 183 SLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLIRV-GGIIVIDNVLWHG 234 (279)
Q Consensus 183 ~l~~~~~~~~~~~fDlI~id~~~--~~~~~~l~~~~~~Lk~-gG~lv~dd~~~~g 234 (279)
.+.... .....+|++..+. ......++.+.++.+. |-.+++|+....+
T Consensus 147 ~l~~ai----~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~ 197 (403)
T PRK07810 147 QWEEAL----SVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATP 197 (403)
T ss_pred HHHHhc----CcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 333322 2346788875431 1111224444444444 5577788876544
No 475
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=78.64 E-value=24 Score=32.01 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=55.0
Q ss_pred cCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 118 ~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
.++.+||-.|+| .|..+..+++.. +.++++++.+++....+.+ ..|... .+...+. +.+... ...+
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~--G~~vi~~~~~~~~~~~~~~---~~Ga~~--~i~~~~~-~~~~~~-----~~~~ 245 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSDKKREEALE---HLGADD--YLVSSDA-AEMQEA-----ADSL 245 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH---hcCCcE--EecCCCh-HHHHHh-----cCCC
Confidence 456788877764 344555666665 4678888887765444332 344421 1111111 122222 2358
Q ss_pred EEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (279)
Q Consensus 197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~ 230 (279)
|+||-.... ...++.+.+.|++||.++.-..
T Consensus 246 D~vid~~g~---~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 246 DYIIDTVPV---FHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred cEEEECCCc---hHHHHHHHHHhccCCEEEEECC
Confidence 988754332 2356677889999998887443
No 476
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=78.57 E-value=18 Score=32.74 Aligned_cols=77 Identities=14% Similarity=0.120 Sum_probs=46.4
Q ss_pred CEEEEEcCccCHHHHHHHHHCCC--CCEEEEEeCC-------------------hhHHHHHHHHHHHhCCCCcEEEEEcC
Q 023645 121 QRCIEVGVYTGYSSLAIALVLPE--SGCLVACERD-------------------ARSLEVAKKYYERAGVSHKVKIKHGL 179 (279)
Q Consensus 121 ~~VLEiG~G~G~~t~~la~~~~~--~~~v~~iD~s-------------------~~~~~~a~~~~~~~g~~~~v~~~~gd 179 (279)
.+||-||. |..+..+++.+.- -.++..||.+ +...+.|.+.+.+.-..-.|.++.++
T Consensus 41 ~kiLviGA--GGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~~v~~h~~k 118 (422)
T KOG2015|consen 41 CKILVIGA--GGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGCVVVPHRQK 118 (422)
T ss_pred CcEEEEcc--CcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCcEEeeeecc
Confidence 47999988 4566666654321 1244444432 23345566655543333446788888
Q ss_pred hhhHHHHHHhCCCCCcEEEEEEeCC
Q 023645 180 AADSLKALILNGEASSYDFAFVDAE 204 (279)
Q Consensus 180 ~~~~l~~~~~~~~~~~fDlI~id~~ 204 (279)
..+....+ -.+||+|++.-+
T Consensus 119 Iqd~~~~F-----Yk~F~~iicGLD 138 (422)
T KOG2015|consen 119 IQDKPISF-----YKRFDLIICGLD 138 (422)
T ss_pred hhcCCHHH-----HhhhceEEeccc
Confidence 87765555 478999998655
No 477
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=78.57 E-value=14 Score=31.44 Aligned_cols=81 Identities=21% Similarity=0.222 Sum_probs=51.1
Q ss_pred EEEEEcCccCHHHHHHHHHCCCC-CEEEEEeCChhHHHHHHH-HHHHhCCCCcEEEEEcChhh--HHHHHHhCCCCCcEE
Q 023645 122 RCIEVGVYTGYSSLAIALVLPES-GCLVACERDARSLEVAKK-YYERAGVSHKVKIKHGLAAD--SLKALILNGEASSYD 197 (279)
Q Consensus 122 ~VLEiG~G~G~~t~~la~~~~~~-~~v~~iD~s~~~~~~a~~-~~~~~g~~~~v~~~~gd~~~--~l~~~~~~~~~~~fD 197 (279)
+++=+|| |..+..+|+.+... ..|+.+|.+++.++.... .+ ....+++|+.+ .|... +-..+|
T Consensus 2 ~iiIiG~--G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~-------~~~~v~gd~t~~~~L~~a----gi~~aD 68 (225)
T COG0569 2 KIIIIGA--GRVGRSVARELSEEGHNVVLIDRDEERVEEFLADEL-------DTHVVIGDATDEDVLEEA----GIDDAD 68 (225)
T ss_pred EEEEECC--cHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhc-------ceEEEEecCCCHHHHHhc----CCCcCC
Confidence 5677777 56666677666433 589999999987655222 11 26788888865 33332 256899
Q ss_pred EEEEeCCccchHHHHHHH
Q 023645 198 FAFVDAEKRMYQEYFELL 215 (279)
Q Consensus 198 lI~id~~~~~~~~~l~~~ 215 (279)
.++...........+..+
T Consensus 69 ~vva~t~~d~~N~i~~~l 86 (225)
T COG0569 69 AVVAATGNDEVNSVLALL 86 (225)
T ss_pred EEEEeeCCCHHHHHHHHH
Confidence 998776544433433333
No 478
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=78.54 E-value=13 Score=33.19 Aligned_cols=93 Identities=17% Similarity=0.192 Sum_probs=53.9
Q ss_pred EEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHHHHhC-CC-----CcEEEEEcChhhHHHHHHhCCCCC
Q 023645 122 RCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAG-VS-----HKVKIKHGLAADSLKALILNGEAS 194 (279)
Q Consensus 122 ~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g-~~-----~~v~~~~gd~~~~l~~~~~~~~~~ 194 (279)
+|.=||+ |..+..++..+.. +.+|+.+|.+++..+..++...... .. ..+... .+. ... ..
T Consensus 3 kI~iiG~--G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~-----~~ 70 (325)
T PRK00094 3 KIAVLGA--GSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRAT-TDL----AEA-----LA 70 (325)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEe-CCH----HHH-----Hh
Confidence 5777777 5566666554432 3589999999877665544210000 00 012211 122 111 24
Q ss_pred cEEEEEEeCCccchHHHHHHHHccCCCCcEEE
Q 023645 195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV 226 (279)
Q Consensus 195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv 226 (279)
..|+||+..........++.+.+.++++.+++
T Consensus 71 ~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi 102 (325)
T PRK00094 71 DADLILVAVPSQALREVLKQLKPLLPPDAPIV 102 (325)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEE
Confidence 57999987776667777788888888877654
No 479
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=78.50 E-value=21 Score=31.94 Aligned_cols=100 Identities=20% Similarity=0.288 Sum_probs=55.6
Q ss_pred CCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645 119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (279)
Q Consensus 119 ~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD 197 (279)
++++||-.|+|. |..+..+++..+ ..+|++++.+++..+.+++ .|...-+.....+..+.+..+ .....+|
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----lg~~~~~~~~~~~~~~~~~~~---~~~~~~d 234 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVG-ARHVVITDVNEYRLELARK----MGATRAVNVAKEDLRDVMAEL---GMTEGFD 234 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHHHh---cCCCCCC
Confidence 566777777653 556666777654 1268888877766555443 343221111122222222222 1135689
Q ss_pred EEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645 198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229 (279)
Q Consensus 198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd 229 (279)
+||-.... ...+..+.+.|+++|.++.-.
T Consensus 235 ~v~d~~g~---~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 235 VGLEMSGA---PSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred EEEECCCC---HHHHHHHHHHHhcCCEEEEEe
Confidence 88753322 235667788899999888743
No 480
>PRK05854 short chain dehydrogenase; Provisional
Probab=78.45 E-value=25 Score=31.27 Aligned_cols=85 Identities=16% Similarity=0.092 Sum_probs=52.4
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhC--CCC
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GEA 193 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~--~~~ 193 (279)
.++++|-.|+. |.++..+++.+. .+.+|+.+..+++..+.+.+.+....-..++.++.+|..+. ...+.+. ...
T Consensus 13 ~gk~~lITGas-~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 13 SGKRAVVTGAS-DGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 45788888865 556666666553 35799999998877666655554432233588888887542 1111111 013
Q ss_pred CcEEEEEEeCC
Q 023645 194 SSYDFAFVDAE 204 (279)
Q Consensus 194 ~~fDlI~id~~ 204 (279)
+..|+++.++.
T Consensus 92 ~~iD~li~nAG 102 (313)
T PRK05854 92 RPIHLLINNAG 102 (313)
T ss_pred CCccEEEECCc
Confidence 57899987653
No 481
>PRK08265 short chain dehydrogenase; Provisional
Probab=78.42 E-value=33 Score=29.38 Aligned_cols=80 Identities=13% Similarity=0.071 Sum_probs=47.2
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhC--CCC
Q 023645 119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GEA 193 (279)
Q Consensus 119 ~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~--~~~ 193 (279)
..+++|-.|+ +|..+..+++.+. .+.+|+.++.+++..+...+.+ ..++.++.+|..+. +..+... ..-
T Consensus 5 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (261)
T PRK08265 5 AGKVAIVTGG-ATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL-----GERARFIATDITDDAAIERAVATVVARF 78 (261)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence 4568888885 4566777666543 3569999999876544333222 23578888888642 2111110 012
Q ss_pred CcEEEEEEeCC
Q 023645 194 SSYDFAFVDAE 204 (279)
Q Consensus 194 ~~fDlI~id~~ 204 (279)
+..|.++..+.
T Consensus 79 g~id~lv~~ag 89 (261)
T PRK08265 79 GRVDILVNLAC 89 (261)
T ss_pred CCCCEEEECCC
Confidence 56898887643
No 482
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=78.40 E-value=21 Score=29.25 Aligned_cols=83 Identities=8% Similarity=0.104 Sum_probs=44.3
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCC--CcEEEEEcChhh--HHHHHHhCC-CCC
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS--HKVKIKHGLAAD--SLKALILNG-EAS 194 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~--~~v~~~~gd~~~--~l~~~~~~~-~~~ 194 (279)
...|+.+|||.=.-...+....+ +.+++-+|. |+.++.-++.++..+.. .+.+++.+|+.+ +...+.+.+ +.+
T Consensus 79 ~~qvV~LGaGlDTr~~Rl~~~~~-~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 79 ARQVVNLGAGLDTRAYRLDNPAG-GVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp ESEEEEET-TT--HHHHHHHTTT-TEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred CcEEEEcCCCCCchHHHhhcccc-ceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence 44899999976666555555333 567777777 55666666666654221 224568888864 344444332 234
Q ss_pred cEEEEEEeCC
Q 023645 195 SYDFAFVDAE 204 (279)
Q Consensus 195 ~fDlI~id~~ 204 (279)
..-++++-+.
T Consensus 157 ~ptl~i~Egv 166 (183)
T PF04072_consen 157 RPTLFIAEGV 166 (183)
T ss_dssp SEEEEEEESS
T ss_pred CCeEEEEcch
Confidence 4455555543
No 483
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=78.38 E-value=21 Score=34.14 Aligned_cols=127 Identities=17% Similarity=0.126 Sum_probs=67.3
Q ss_pred EEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645 122 RCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (279)
Q Consensus 122 ~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~ 200 (279)
+|-=||. |..+..|+..+.+ +.+|++.|.+++..+...+.....|. .+. ...+..+....+ ...|+|+
T Consensus 3 ~IgvIGL--G~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~--~i~-~~~s~~e~v~~l------~~~d~Ii 71 (470)
T PTZ00142 3 DIGLIGL--AVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNT--RVK-GYHTLEELVNSL------KKPRKVI 71 (470)
T ss_pred EEEEEeE--hHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCC--cce-ecCCHHHHHhcC------CCCCEEE
Confidence 4555666 4445555554432 45899999999887666553322232 121 122333333221 3468776
Q ss_pred Ee-CCccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEEeecCCce
Q 023645 201 VD-AEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGM 273 (279)
Q Consensus 201 id-~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~ 273 (279)
+- .+.....+.++.+.+.|++|-++ +|- |... ...+ ++..+.+. ..++..+-.|+..|.
T Consensus 72 l~v~~~~~v~~vi~~l~~~L~~g~iI-ID~----gn~~-----~~dt---~~r~~~l~-~~Gi~fldapVSGG~ 131 (470)
T PTZ00142 72 LLIKAGEAVDETIDNLLPLLEKGDII-IDG----GNEW-----YLNT---ERRIKRCE-EKGILYLGMGVSGGE 131 (470)
T ss_pred EEeCChHHHHHHHHHHHhhCCCCCEE-EEC----CCCC-----HHHH---HHHHHHHH-HcCCeEEcCCCCCCH
Confidence 65 44555667788888999887554 432 1110 1111 22233333 346777777776653
No 484
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=78.32 E-value=21 Score=32.89 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=44.6
Q ss_pred CCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCC-------------------hhHHHHHHHHHHHhCCCCcEEEEEc
Q 023645 119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERD-------------------ARSLEVAKKYYERAGVSHKVKIKHG 178 (279)
Q Consensus 119 ~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s-------------------~~~~~~a~~~~~~~g~~~~v~~~~g 178 (279)
...+|+=+|||. |......+...+ -++++.+|.+ ....+.+.+.+.+.+..-+++....
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~G-vg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~ 212 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAG-VGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE 212 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 456899999973 443333332333 3689999987 3445666677765543323444443
Q ss_pred Chhh-HHHHHHhCCCCCcEEEEEEeCC
Q 023645 179 LAAD-SLKALILNGEASSYDFAFVDAE 204 (279)
Q Consensus 179 d~~~-~l~~~~~~~~~~~fDlI~id~~ 204 (279)
...+ .+..+ -..+|+|+...+
T Consensus 213 ~~~~~~~~~~-----~~~~D~Vv~~~d 234 (376)
T PRK08762 213 RVTSDNVEAL-----LQDVDVVVDGAD 234 (376)
T ss_pred cCChHHHHHH-----HhCCCEEEECCC
Confidence 3322 22222 256898886544
No 485
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=78.17 E-value=10 Score=34.48 Aligned_cols=95 Identities=12% Similarity=0.080 Sum_probs=55.2
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHH-HhCCC------CcEEEEEcChhhHHHHHHhCCC
Q 023645 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE-RAGVS------HKVKIKHGLAADSLKALILNGE 192 (279)
Q Consensus 120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~-~~g~~------~~v~~~~gd~~~~l~~~~~~~~ 192 (279)
..+|.=||+|. ++..++..+...+.++....+++..+..++.-. ...+. .++.+. .|.. ..
T Consensus 7 ~mkI~IiGaGa--~G~alA~~La~~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t-~d~~----~a----- 74 (341)
T PRK12439 7 EPKVVVLGGGS--WGTTVASICARRGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRAT-TDFA----EA----- 74 (341)
T ss_pred CCeEEEECCCH--HHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEE-CCHH----HH-----
Confidence 45788888854 444444443334467777788877655554210 00111 112111 2221 11
Q ss_pred CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEE
Q 023645 193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV 226 (279)
Q Consensus 193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv 226 (279)
....|+||+-.+.......++.+.+.++++..++
T Consensus 75 ~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vI 108 (341)
T PRK12439 75 ANCADVVVMGVPSHGFRGVLTELAKELRPWVPVV 108 (341)
T ss_pred HhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEE
Confidence 2467999998887778888999999998886443
No 486
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.94 E-value=31 Score=30.42 Aligned_cols=93 Identities=16% Similarity=0.165 Sum_probs=53.6
Q ss_pred CEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHh-------CC-C--------CcEEEEEcChhhH
Q 023645 121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERA-------GV-S--------HKVKIKHGLAADS 183 (279)
Q Consensus 121 ~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~-------g~-~--------~~v~~~~gd~~~~ 183 (279)
++|.=||+|.= +..++..+. .+.+|+.+|.+++.++.+.+.+... +. . .++++. .+.
T Consensus 5 ~kI~vIGaG~m--G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~--- 78 (292)
T PRK07530 5 KKVGVIGAGQM--GNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL--- 78 (292)
T ss_pred CEEEEECCcHH--HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH---
Confidence 46888888643 333333222 2468999999999887765443321 21 0 113322 121
Q ss_pred HHHHHhCCCCCcEEEEEEeCCc--cchHHHHHHHHccCCCCcEEE
Q 023645 184 LKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLIRVGGIIV 226 (279)
Q Consensus 184 l~~~~~~~~~~~fDlI~id~~~--~~~~~~l~~~~~~Lk~gG~lv 226 (279)
..+ ...|+|+...+. .....+++.+.+.++++.+|+
T Consensus 79 -~~~------~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 79 -EDL------ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred -HHh------cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 222 457888876542 223466778888889987766
No 487
>PRK05967 cystathionine beta-lyase; Provisional
Probab=77.92 E-value=42 Score=31.27 Aligned_cols=114 Identities=12% Similarity=0.132 Sum_probs=60.8
Q ss_pred HHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhH-HHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhC
Q 023645 112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARS-LEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 190 (279)
Q Consensus 112 ~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~-~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~ 190 (279)
..++....+...+-+.+|.+.+...+...+.++.+|+..+..-.. ....++..+..|. +++++..+..+.+....
T Consensus 71 ~~la~le~~~~~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi--~v~~vd~~~~e~l~~al-- 146 (395)
T PRK05967 71 KAIDALEGSAGTILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGV--EVEYYDPEIGAGIAKLM-- 146 (395)
T ss_pred HHHHHHhCCCCEEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCe--EEEEeCCCCHHHHHHhc--
Confidence 333333334445666777666666555556656677776654332 2234455555554 35555333223333332
Q ss_pred CCCCcEEEEEEeCC--ccchHHHHHHHHccCCC-CcEEEEeCCC
Q 023645 191 GEASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVL 231 (279)
Q Consensus 191 ~~~~~fDlI~id~~--~~~~~~~l~~~~~~Lk~-gG~lv~dd~~ 231 (279)
..+..+|++..+ .......++.+.++.+. |..+++|++.
T Consensus 147 --~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~ 188 (395)
T PRK05967 147 --RPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTW 188 (395)
T ss_pred --CcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCc
Confidence 244678888754 22344556666666655 5567777775
No 488
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.91 E-value=14 Score=33.49 Aligned_cols=99 Identities=18% Similarity=0.162 Sum_probs=58.3
Q ss_pred cCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645 118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (279)
Q Consensus 118 ~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f 196 (279)
.++++|--+|.| -|..+..+|++++ .+|++||.+...-+ +.++..|-+.-+.+. .| .+..... .+..
T Consensus 180 ~pG~~vgI~GlGGLGh~aVq~AKAMG--~rV~vis~~~~kke---ea~~~LGAd~fv~~~-~d-~d~~~~~-----~~~~ 247 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMAVQYAKAMG--MRVTVISTSSKKKE---EAIKSLGADVFVDST-ED-PDIMKAI-----MKTT 247 (360)
T ss_pred CCCcEEEEecCcccchHHHHHHHHhC--cEEEEEeCCchhHH---HHHHhcCcceeEEec-CC-HHHHHHH-----HHhh
Confidence 366676666644 7889999999984 89999999975443 334445544323332 11 1233333 2344
Q ss_pred EEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229 (279)
Q Consensus 197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd 229 (279)
|.++-... .-....++.+..+||++|.+|+=.
T Consensus 248 dg~~~~v~-~~a~~~~~~~~~~lk~~Gt~V~vg 279 (360)
T KOG0023|consen 248 DGGIDTVS-NLAEHALEPLLGLLKVNGTLVLVG 279 (360)
T ss_pred cCcceeee-eccccchHHHHHHhhcCCEEEEEe
Confidence 44432111 002234667788999999999843
No 489
>PRK06234 methionine gamma-lyase; Provisional
Probab=77.88 E-value=28 Score=32.30 Aligned_cols=124 Identities=11% Similarity=0.181 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChh-HHHHHHHHHHHhCCCCcEEEEEcChhhH
Q 023645 105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHGLAADS 183 (279)
Q Consensus 105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~-~~~~a~~~~~~~g~~~~v~~~~gd~~~~ 183 (279)
+....+-..++.......++-+++|++.....+...+.++.+|+..+..-. ........++..|. ++.++..+-.+.
T Consensus 64 p~~~~Le~~iA~~~g~~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~--~v~~vd~~d~e~ 141 (400)
T PRK06234 64 PTSTEVENKLALLEGGEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGV--EVTFVDTSNLEE 141 (400)
T ss_pred ccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCe--EEEEECCCCHHH
Confidence 334444444555545556777777776655555444555667766553221 22222333343343 233332221222
Q ss_pred HHHHHhCCCCCcEEEEEEeCCc--cchHHHHHHHHccCC---CCcEEEEeCCCCCC
Q 023645 184 LKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLIR---VGGIIVIDNVLWHG 234 (279)
Q Consensus 184 l~~~~~~~~~~~fDlI~id~~~--~~~~~~l~~~~~~Lk---~gG~lv~dd~~~~g 234 (279)
+.... ...-.+|++..+. ......++.+.++.+ +|-++++|++...+
T Consensus 142 l~~~i----~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~ 193 (400)
T PRK06234 142 VRNAL----KANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTP 193 (400)
T ss_pred HHHHh----ccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCch
Confidence 32222 2345788876431 111122444444444 37788888886554
No 490
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.71 E-value=43 Score=29.12 Aligned_cols=83 Identities=13% Similarity=0.058 Sum_probs=46.4
Q ss_pred CCCEEEEEcCcc-CHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCC--C
Q 023645 119 GAQRCIEVGVYT-GYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E 192 (279)
Q Consensus 119 ~~~~VLEiG~G~-G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~--~ 192 (279)
.++.+|-.|++. +..+..+++.+. .+.+|+.++.++...+.+++..+..+. . .++.+|..+. ...+.+.- .
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~--~-~~~~~Dv~d~~~v~~~~~~i~~~ 80 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGS--D-YVYELDVSKPEHFKSLAESLKKD 80 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCC--c-eEEEecCCCHHHHHHHHHHHHHH
Confidence 457889999762 456666666553 357898888875433333433333332 2 4566777542 22211110 1
Q ss_pred CCcEEEEEEeCC
Q 023645 193 ASSYDFAFVDAE 204 (279)
Q Consensus 193 ~~~fDlI~id~~ 204 (279)
.+++|+++.++.
T Consensus 81 ~g~iDilVnnAG 92 (274)
T PRK08415 81 LGKIDFIVHSVA 92 (274)
T ss_pred cCCCCEEEECCc
Confidence 367898887654
No 491
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=77.66 E-value=38 Score=30.05 Aligned_cols=120 Identities=14% Similarity=0.124 Sum_probs=64.3
Q ss_pred EEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645 122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (279)
Q Consensus 122 ~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~ 200 (279)
+|-=||+ |..+..++..+. .+.+|+..|.+++..+.++ ..|. .. ..+..+.... ....|+|+
T Consensus 2 ~Ig~IGl--G~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~----~~g~----~~-~~s~~~~~~~------~~~advVi 64 (299)
T PRK12490 2 KLGLIGL--GKMGGNMAERLREDGHEVVGYDVNQEAVDVAG----KLGI----TA-RHSLEELVSK------LEAPRTIW 64 (299)
T ss_pred EEEEEcc--cHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH----HCCC----ee-cCCHHHHHHh------CCCCCEEE
Confidence 3445665 666666666542 2458999999987654432 2231 21 1223222221 12358888
Q ss_pred EeCCcc-chHHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEEeecCCc
Q 023645 201 VDAEKR-MYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDG 272 (279)
Q Consensus 201 id~~~~-~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G 272 (279)
+..+.. .....++.+...+++|.+++--....+.. .++..+.+.. .++..+-.|+..|
T Consensus 65 ~~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~~~~-------------~~~~~~~~~~-~g~~~vdapV~G~ 123 (299)
T PRK12490 65 VMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYKD-------------DLRRAEELAE-RGIHYVDCGTSGG 123 (299)
T ss_pred EEecCchHHHHHHHHHhccCCCCCEEEECCCCCchh-------------HHHHHHHHHH-cCCeEEeCCCCCC
Confidence 766544 66677777888888876554322222111 3444554443 3466677777544
No 492
>PRK08818 prephenate dehydrogenase; Provisional
Probab=77.51 E-value=10 Score=35.01 Aligned_cols=32 Identities=16% Similarity=0.002 Sum_probs=21.0
Q ss_pred CEEEEEcCccCHHHHHHHHHCC--CCCEEEEEeCC
Q 023645 121 QRCIEVGVYTGYSSLAIALVLP--ESGCLVACERD 153 (279)
Q Consensus 121 ~~VLEiG~G~G~~t~~la~~~~--~~~~v~~iD~s 153 (279)
.+|.=||. +|..+-++++.+. .+.+|+++|.+
T Consensus 5 ~~I~IIGl-~GliGgslA~alk~~~~~~V~g~D~~ 38 (370)
T PRK08818 5 PVVGIVGS-AGAYGRWLARFLRTRMQLEVIGHDPA 38 (370)
T ss_pred CEEEEECC-CCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 47888885 3555555555543 14689999985
No 493
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=77.46 E-value=65 Score=30.37 Aligned_cols=79 Identities=19% Similarity=0.159 Sum_probs=40.2
Q ss_pred CCEEEEEc-CccCHHHHH--HHHHC---CCCCEEEEEeCChhH---HHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhC
Q 023645 120 AQRCIEVG-VYTGYSSLA--IALVL---PESGCLVACERDARS---LEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 190 (279)
Q Consensus 120 ~~~VLEiG-~G~G~~t~~--la~~~---~~~~~v~~iD~s~~~---~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~ 190 (279)
+..++=+| +|.|-+|.. ++..+ ..+.+|..++.++.. .+..+.+.+..++. +.. ..+..+....+ ..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp--~~~-~~~~~~l~~~l-~~ 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIP--VEV-VYDPKELAKAL-EQ 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCc--eEc-cCCHHhHHHHH-HH
Confidence 34677777 677766543 33322 224578888888753 33344444444442 211 11222222111 11
Q ss_pred CCCCcEEEEEEeCC
Q 023645 191 GEASSYDFAFVDAE 204 (279)
Q Consensus 191 ~~~~~fDlI~id~~ 204 (279)
...+|+|++|..
T Consensus 297 --~~~~DlVlIDt~ 308 (424)
T PRK05703 297 --LRDCDVILIDTA 308 (424)
T ss_pred --hCCCCEEEEeCC
Confidence 246899999965
No 494
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=77.41 E-value=36 Score=31.50 Aligned_cols=120 Identities=17% Similarity=0.178 Sum_probs=56.5
Q ss_pred HHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChh-HHHHHHHHHHHhCCCCcEEEEEc-ChhhHHH
Q 023645 108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHG-LAADSLK 185 (279)
Q Consensus 108 ~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~-~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~ 185 (279)
..+-..++.......++=.++|++.....+...+.++.+|+..+..-. ............+. .+.++.. |. +.+.
T Consensus 55 ~~L~~~lA~l~g~~~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi--~v~~vd~~d~-e~l~ 131 (386)
T PRK08045 55 DVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY--RVLFVDQGDE-QALR 131 (386)
T ss_pred HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCe--EEEEeCCCCH-HHHH
Confidence 333444444433445666666666555555444555667777665443 23343333332221 2344321 22 2222
Q ss_pred HHHhCCCCCcEEEEEEeCCcc--chHHHHHHHHccCC-CCcEEEEeCCCCCC
Q 023645 186 ALILNGEASSYDFAFVDAEKR--MYQEYFELLLQLIR-VGGIIVIDNVLWHG 234 (279)
Q Consensus 186 ~~~~~~~~~~fDlI~id~~~~--~~~~~l~~~~~~Lk-~gG~lv~dd~~~~g 234 (279)
... ..+.++|++..+.. .....++.+.++.+ .|..+++|++...+
T Consensus 132 ~~l----~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~ 179 (386)
T PRK08045 132 AAL----AEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSP 179 (386)
T ss_pred Hhc----ccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 221 23567888764311 11111333333333 36788888886554
No 495
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=77.40 E-value=16 Score=32.83 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=29.3
Q ss_pred CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
...+|+|++..-.-+..+.++.+.+.+++..++++
T Consensus 65 ~~~~Dlviv~vKa~q~~~al~~l~~~~~~~t~vl~ 99 (307)
T COG1893 65 LGPADLVIVTVKAYQLEEALPSLAPLLGPNTVVLF 99 (307)
T ss_pred cCCCCEEEEEeccccHHHHHHHhhhcCCCCcEEEE
Confidence 46899999988777788899999999999986654
No 496
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.38 E-value=35 Score=29.07 Aligned_cols=78 Identities=9% Similarity=0.064 Sum_probs=46.2
Q ss_pred CCCEEEEEcCcc-CHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HH----HHHhC
Q 023645 119 GAQRCIEVGVYT-GYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LK----ALILN 190 (279)
Q Consensus 119 ~~~~VLEiG~G~-G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~----~~~~~ 190 (279)
.++.+|-.|.++ +..+..+++.+. .+.+|+.++.++...+.+++. . ..++.++..|..+. .. ...++
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~----~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKL----V-DEEDLLVECDVASDESIERAFATIKER 80 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhh----c-cCceeEEeCCCCCHHHHHHHHHHHHHH
Confidence 467899888764 567777777653 467888887764332222221 1 13477888888542 22 22111
Q ss_pred CCCCcEEEEEEeC
Q 023645 191 GEASSYDFAFVDA 203 (279)
Q Consensus 191 ~~~~~fDlI~id~ 203 (279)
-+++|+++.++
T Consensus 81 --~g~iD~lv~nA 91 (252)
T PRK06079 81 --VGKIDGIVHAI 91 (252)
T ss_pred --hCCCCEEEEcc
Confidence 26789988654
No 497
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=77.30 E-value=26 Score=31.21 Aligned_cols=102 Identities=22% Similarity=0.237 Sum_probs=52.7
Q ss_pred hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc---ChhhHHHHHHhC
Q 023645 116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG---LAADSLKALILN 190 (279)
Q Consensus 116 ~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g---d~~~~l~~~~~~ 190 (279)
...++.+||=.|+ +.|..+..+++... .+++.+..+++..+..++.+...|...-+..... +..+.+...
T Consensus 143 ~~~~g~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~--- 217 (341)
T cd08290 143 KLQPGDWVIQNGANSAVGQAVIQLAKLLG--IKTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLATELLKSA--- 217 (341)
T ss_pred ccCCCCEEEEccchhHHHHHHHHHHHHcC--CeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHHHHHHHH---
Confidence 3456778888875 45666677777763 5666555444211222233333444321111111 222222222
Q ss_pred CCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645 191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (279)
Q Consensus 191 ~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~ 227 (279)
. .+.+|+|+-..... .+....+.|+++|.++.
T Consensus 218 ~-~~~~d~vld~~g~~----~~~~~~~~l~~~G~~v~ 249 (341)
T cd08290 218 P-GGRPKLALNCVGGK----SATELARLLSPGGTMVT 249 (341)
T ss_pred c-CCCceEEEECcCcH----hHHHHHHHhCCCCEEEE
Confidence 1 22699888433321 23456788999998885
No 498
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.20 E-value=30 Score=30.79 Aligned_cols=94 Identities=22% Similarity=0.236 Sum_probs=51.3
Q ss_pred CEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHh-CC--C--------CcEEEEEcChhhHHHHHH
Q 023645 121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERA-GV--S--------HKVKIKHGLAADSLKALI 188 (279)
Q Consensus 121 ~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~-g~--~--------~~v~~~~gd~~~~l~~~~ 188 (279)
++|.=||+|. .+..++..+. .+.+|+.+|.+++.++.+++.+... +. . .++++. .|. ...
T Consensus 5 ~~I~vIGaG~--mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~----~~~- 76 (311)
T PRK06130 5 QNLAIIGAGT--MGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRME-AGL----AAA- 76 (311)
T ss_pred cEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe-CCH----HHH-
Confidence 4788888864 3333333321 1458999999999888777643211 11 0 112221 121 111
Q ss_pred hCCCCCcEEEEEEeCCcc--chHHHHHHHHccCCCCcEEE
Q 023645 189 LNGEASSYDFAFVDAEKR--MYQEYFELLLQLIRVGGIIV 226 (279)
Q Consensus 189 ~~~~~~~fDlI~id~~~~--~~~~~l~~~~~~Lk~gG~lv 226 (279)
-...|+||...... .....+..+.+.++++.+++
T Consensus 77 ----~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~ 112 (311)
T PRK06130 77 ----VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFA 112 (311)
T ss_pred ----hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEE
Confidence 14568988765433 24566777777666655443
No 499
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.16 E-value=32 Score=30.11 Aligned_cols=92 Identities=13% Similarity=0.110 Sum_probs=52.8
Q ss_pred EEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHH-------HhCC-C--------CcEEEEEcChhhHH
Q 023645 122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYE-------RAGV-S--------HKVKIKHGLAADSL 184 (279)
Q Consensus 122 ~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~-------~~g~-~--------~~v~~~~gd~~~~l 184 (279)
+|--||+| ..+..++..+. .+.+|+.+|.+++.++.+++.++ +.|. . .++++. .|.
T Consensus 5 kI~VIG~G--~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~~---- 77 (282)
T PRK05808 5 KIGVIGAG--TMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TDL---- 77 (282)
T ss_pred EEEEEccC--HHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH----
Confidence 57777875 33333333221 14589999999998876553322 2221 1 122221 221
Q ss_pred HHHHhCCCCCcEEEEEEeCCccc--hHHHHHHHHccCCCCcEEE
Q 023645 185 KALILNGEASSYDFAFVDAEKRM--YQEYFELLLQLIRVGGIIV 226 (279)
Q Consensus 185 ~~~~~~~~~~~fDlI~id~~~~~--~~~~l~~~~~~Lk~gG~lv 226 (279)
.. -...|+|+....... -...++.+.+.++++.+|+
T Consensus 78 ~~------~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~ 115 (282)
T PRK05808 78 DD------LKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILA 115 (282)
T ss_pred HH------hccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEE
Confidence 11 245799988765322 2578888888889887763
No 500
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=77.07 E-value=52 Score=29.77 Aligned_cols=113 Identities=14% Similarity=0.082 Sum_probs=68.6
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCCCCCc
Q 023645 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASS 195 (279)
Q Consensus 118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~~~~~ 195 (279)
..+...+--|+|++.+-.++...+.++.+|..+.+- .+-..+-...++.|. +|.++..|.-+. ++.+.+.-+..+
T Consensus 66 ~n~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G-~wg~ra~D~~~r~ga--~V~~v~~~~G~~~~le~i~~~lsqh~ 142 (385)
T KOG2862|consen 66 ANAQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTG-TWGQRAADCARRYGA--EVDVVEADIGQAVPLEEITEKLSQHK 142 (385)
T ss_pred CCCceEEEecCCcchHHHHHHhhcCCCCeEEEEEec-hHHHHHHHHHHhhCc--eeeEEecCcccCccHHHHHHHHHhcC
Confidence 345678888999998888888877667677666553 233333344444453 477776665321 111111112467
Q ss_pred EEEEEEeCC------ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645 196 YDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK 235 (279)
Q Consensus 196 fDlI~id~~------~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~ 235 (279)
+-+||+.+. ..+....+..+.+ +++..+++|.+..-|.
T Consensus 143 p~~vfv~hgdsSTgV~q~~~~~~g~lc~--k~~~lllVD~VaSlgg 186 (385)
T KOG2862|consen 143 PKAVFVTHGDSSTGVLQDLLAISGELCH--KHEALLLVDTVASLGG 186 (385)
T ss_pred CceEEEEecCccccccchHHHHHHHHhh--cCCeEEEEechhhcCC
Confidence 888887543 2333455556656 8899999998886553
Done!