Query 023646
Match_columns 279
No_of_seqs 132 out of 248
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 05:35:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023646.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023646hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3037 Cell membrane glycopro 100.0 9.7E-70 2.1E-74 500.2 21.5 266 6-274 2-297 (330)
2 PF04683 Proteasom_Rpn13: Prot 100.0 6.7E-39 1.4E-43 248.9 11.0 83 22-104 1-85 (85)
3 PF13919 ASXH: Asx homology do 94.9 0.017 3.6E-07 48.9 2.3 66 200-267 32-106 (138)
4 COG1111 MPH1 ERCC4-like helica 43.8 12 0.00027 38.1 1.5 35 61-100 441-489 (542)
5 COG3128 PiuC Uncharacterized i 37.7 26 0.00057 31.6 2.4 35 62-106 149-184 (229)
6 TIGR01204 bioW 6-carboxyhexano 36.5 1E+02 0.0022 28.5 6.1 20 22-42 105-127 (232)
7 smart00569 L27 domain in recep 35.2 83 0.0018 21.2 4.2 34 223-257 10-43 (55)
8 PRK15195 fimbrial chaperone pr 34.8 3.5E+02 0.0076 24.5 9.5 77 21-101 25-109 (229)
9 KOG2297 Predicted translation 33.4 40 0.00086 32.9 3.0 52 210-261 200-263 (412)
10 cd01230 PH_EFA6 EFA6 Pleckstri 32.7 2.7E+02 0.0059 22.6 9.5 45 74-121 68-112 (117)
11 cd01253 PH_beta_spectrin Beta- 32.1 2.3E+02 0.005 21.6 7.7 44 72-118 58-103 (104)
12 PF14795 Leucyl-specific: Leuc 32.0 30 0.00064 24.8 1.4 39 17-56 7-56 (56)
13 PF08410 DUF1737: Domain of un 29.6 39 0.00085 24.2 1.8 17 107-123 12-28 (54)
14 PRK15188 fimbrial chaperone pr 29.4 4.4E+02 0.0095 24.0 9.8 78 22-102 27-112 (228)
15 PTZ00449 104 kDa microneme/rho 29.3 1.3E+02 0.0029 31.4 6.1 61 29-106 405-479 (943)
16 PTZ00283 serine/threonine prot 27.8 74 0.0016 31.7 4.1 36 83-121 455-490 (496)
17 PRK15233 putative fimbrial cha 27.3 5E+02 0.011 24.0 10.0 83 16-102 35-124 (246)
18 PF14008 Metallophos_C: Iron/z 27.0 1.1E+02 0.0023 21.8 3.7 33 33-65 29-61 (62)
19 PRK13284 flagellar assembly pr 26.0 80 0.0017 26.8 3.4 41 62-107 14-56 (145)
20 PRK15211 fimbrial chaperone pr 25.4 5.2E+02 0.011 23.5 9.9 78 20-101 21-106 (229)
21 PF03971 IDH: Monomeric isocit 25.2 2.7E+02 0.0058 29.5 7.4 59 64-124 420-506 (735)
22 PF02828 L27: L27 domain; Int 25.2 43 0.00092 23.5 1.3 25 234-258 21-45 (56)
23 TIGR03757 conj_TIGR03757 integ 25.0 82 0.0018 25.9 3.1 40 221-260 32-72 (113)
24 PF07511 DUF1525: Protein of u 24.7 1E+02 0.0022 25.4 3.6 40 221-260 31-71 (114)
25 PF14977 FAM194: FAM194 protei 23.7 1.5E+02 0.0033 26.8 4.9 41 66-108 18-58 (208)
26 smart00727 STI1 Heat shock cha 22.9 1E+02 0.0022 19.9 2.7 17 238-254 3-19 (41)
27 PF13897 GOLD_2: Golgi-dynamic 22.8 71 0.0015 27.1 2.4 18 83-100 110-132 (136)
28 PF06880 DUF1262: Protein of u 22.5 4.3E+02 0.0092 21.5 7.0 55 35-90 3-81 (104)
29 PRK09918 putative fimbrial cha 22.2 5.8E+02 0.013 23.0 9.9 77 22-101 24-106 (230)
30 PRK13285 flagellar assembly pr 22.1 1.1E+02 0.0023 26.1 3.4 40 62-107 14-54 (148)
31 PF14646 MYCBPAP: MYCBP-associ 20.9 3.2E+02 0.007 26.9 7.0 34 42-75 256-304 (426)
32 KOG2394 WD40 protein DMR-N9 [G 20.2 2.5E+02 0.0054 29.3 6.0 43 27-69 301-358 (636)
No 1
>KOG3037 consensus Cell membrane glycoprotein [General function prediction only]
Probab=100.00 E-value=9.7e-70 Score=500.20 Aligned_cols=266 Identities=39% Similarity=0.640 Sum_probs=205.3
Q ss_pred CCcCCCCCceeEEEeceeeEecC--CceeecCCCcEEEEEeCCCCceEEEEeeCCCCCcccceeeeCCceEEEEecc-CC
Q 023646 6 TAASPAMQEILLEFRAGKMTFDG--KKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQ-AS 82 (279)
Q Consensus 6 ~~~~~~~~~~li~fkAGk~~~~g--~~V~pd~rkG~l~l~~~~d~l~hf~W~~R~~~~~edd~ii~Pgd~~f~~V~~-~t 82 (279)
++.++.++.+||+||||||.+.| ++|+||+|||+|||.+++|||+||||++|+++.+|||+||||+|++|+||++ ||
T Consensus 2 ~~ss~s~~~~lVeFkAGkm~l~~gtk~v~pDprKGli~i~~sddgliHF~WkdR~~g~VEdDlIifPde~eF~kV~qC~t 81 (330)
T KOG3037|consen 2 TESSNSSSSTLVEFKAGKMRLVGGTKLVTPDPRKGLIYIKRSDDGLIHFCWKDRESGNVEDDLIVFPDEAEFKKVDQCKT 81 (330)
T ss_pred ccccccccceEEEEecceEEecCCcceeecccccceEEEeeCCCceEEEEecccCCCCcccceEEccCceeEEECCCCCC
Confidence 34567889999999999999998 9999999999999999999999999999999999999999999999999999 99
Q ss_pred CeEEEEEEcCCCcceEEEccCCCChhhHHHHHHHHHHhcCCccccc-----chhhccCC-C---ccccc-----------
Q 023646 83 GRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVN-----EEELDASV-P---LQVSE----------- 142 (279)
Q Consensus 83 GRVy~LkF~ss~~~~fFWmQe~~~~~D~~~~~~in~~l~~~~~~~~-----~~~~~~~~-~---~~~~~----------- 142 (279)
||||+|||+++.++|||||||+++++|+++|+|||++||+|+.... ........ . +++..
T Consensus 82 GRVY~LKFkSs~~r~FFWMQE~~~d~D~e~c~rvNelln~p~~~~~~~~~~~~~~l~~~~~s~~~~lfgg~~~~~~L~~~ 161 (330)
T KOG3037|consen 82 GRVYVLKFKSSDQRLFFWMQEPSDDNDKELCSRVNELLNKPPTSRPLGASGSGSMLNDDSKSQLMQLFGGSGMNDGLEAL 161 (330)
T ss_pred CcEEEEEecCCCeeEEEEeecCCCCcCHHHHHHHHHHHcCCCccccccccccccccccccHHHHHhhcCcccccchhhhh
Confidence 9999999999999999999999999999999999999999863210 00000000 0 00000
Q ss_pred ------ccccCCcccCCCCCCCCCCCCCCccCCCCCCCCcchhHHHHHHhccCCCCCCCCCCCCCCcccCCCccchhhhh
Q 023646 143 ------DMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIGPADITEDPDGGLGLGDILKPDLIMPLI 216 (279)
Q Consensus 143 ------~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lq~iL~~l~~~~~~~~~~~~~~L~dvLtpe~l~plL 216 (279)
.+.....++.+++...+++.+. .+...++..+...++.++.++.+.++-+. ....++|.+||+||++.++|
T Consensus 162 ~~e~l~~~~~s~~~s~~~~~~~~t~es~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--g~~~vdLa~vL~~e~v~~vl 238 (330)
T KOG3037|consen 162 TVEQLNSLAESNESSLPGNSVPQTPESS-VSGPESPSEPNKEEDVSNSLSTLSPQIGF--GASTVDLATVLKPEAVAPVL 238 (330)
T ss_pred hHhhhcccccCccccccccccccCcccc-ccCCCCCCccccchhhcccccCCchhccC--CccceehhhhcChHHHHHHh
Confidence 0000000011111111111110 01111224455667777878777542221 12258999999999999999
Q ss_pred cCchHHHhhccCCCCCCCCHHHHHHHhcChHHHHHHHHHHHHhhcCCcc-hhhhcCCcc
Q 023646 217 ETLPLEQRLAPYLPEGQWTPEELLELLQSPPFRQQVDSFTYVRNWTPIF-VTFHFGKRV 274 (279)
Q Consensus 217 ~~~~~~~~L~~~LP~~~~t~e~L~~~l~SPQFqQal~~fs~AL~sG~l~-~~~~~g~~~ 274 (279)
+++.++++|++|||+++...++|.++|+||||+|+|++|++||++|||+ +|+||||+.
T Consensus 239 ~~~~v~erL~phlP~d~~~~~~i~e~l~spqF~qal~sfs~aL~sgql~~~i~qfgl~~ 297 (330)
T KOG3037|consen 239 ANPGVQERLMPHLPSDHDRAEGILELLTSPQFRQALDSFSQALQSGQLGPVICQFGLDL 297 (330)
T ss_pred hCcchhhhhcccCCCCCcchHHHHHhhcCHHHHHHHHHHHHHHhcccccchhhhcCCch
Confidence 9999999999999999988899999999999999999999999999999 458999983
No 2
>PF04683 Proteasom_Rpn13: Proteasome complex subunit Rpn13 ubiquitin receptor; InterPro: IPR006773 This family was thought originally to be involved in cell-adhesion [, ], but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor. The 26S proteasome is a huge macromolecular protein-degradation machine consisting of a proteolytically active 20S core, in the form of four disc-like proteins, and one or two 19S regulatory particles. The regulatory particle(s) sit on the top and or bottom of the core, de-ubiquitinate the substrate peptides, unfold them and guide them into the narrow channel through the centre of the core. Rpn13 and its homologues dock onto the regulatory particle through the N-terminal region which binds Rpn2. The C-terminal part of the domain binds de-ubiquitinating enzyme Uch37/UCHL5 and enhances its isopeptidase activity. Rpn13 binds ubiquitin via a conserved amino-terminal region called the pleckstrin-like receptor for ubiquitin, termed Pru, domain []. The domain forms two contiguous anti-parallel beta-sheets with a configuration similar to the pleckstrin-homology domain (PHD) fold []. Rpn13's ability to bind ubiquitin and the proteasome subunit Rpn2/S1 simultaneously supports evidence of its role as a ubiquitin receptor. Finally, when complexed to di-ubiquitin, via the Pru, and Uch37 via the C-terminal part, it frees up the distal ubiquitin for de-ubiquitination by the Uch37 []. ; GO: 0005634 nucleus, 0005737 cytoplasm; PDB: 2Z4D_A 2KR0_A 2Z59_A 2R2Y_A.
Probab=100.00 E-value=6.7e-39 Score=248.88 Aligned_cols=83 Identities=55% Similarity=1.058 Sum_probs=71.8
Q ss_pred eeeEecCCceeecCCCcEEEEEeCCCCceEEEEeeCCC-CCcccceeeeCCceEEEEecc-CCCeEEEEEEcCCCcceEE
Q 023646 22 GKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTR-NVVEDDQIVFPHEAVFEKVNQ-ASGRVYILKFNTDDRKFFL 99 (279)
Q Consensus 22 Gk~~~~g~~V~pd~rkG~l~l~~~~d~l~hf~W~~R~~-~~~edd~ii~Pgd~~f~~V~~-~tGRVy~LkF~ss~~~~fF 99 (279)
|||+++|++|+|++|||+|+|++++|+|+||||++|++ +.+|+|+||||||++|++|++ +|||||+|||++|+++|||
T Consensus 1 Gk~~~~~~~V~pd~~KG~l~l~~~~d~l~~f~W~~r~~~~~~e~d~il~pg~~~f~~V~~c~tGRVy~LkF~ss~~~~fF 80 (85)
T PF04683_consen 1 GKMDLDGKIVTPDPRKGLLYLYKSEDGLLHFCWKPRDTTGEVEDDLILFPGDATFKKVPQCKTGRVYVLKFKSSDQRYFF 80 (85)
T ss_dssp EEEEEETTEEEE-SS-EEEEEEETTTS-EEEEEEETST---EEEEEEE-TTTEEEEE-TTSSTS-EEEEEETTTT-EEEE
T ss_pred CcEEEeCCEEeECCCCEEEEEEECCCCeEEEEEEEcCcCCCcccceecCCCCeEEEECCcCCCCeEEEEEECCCCccEEE
Confidence 99999999999999999999999999999999999999 999999999999999999999 9999999999999999999
Q ss_pred EccCC
Q 023646 100 WMQEP 104 (279)
Q Consensus 100 WmQe~ 104 (279)
|||||
T Consensus 81 WmQe~ 85 (85)
T PF04683_consen 81 WMQEP 85 (85)
T ss_dssp EE-SS
T ss_pred EecCC
Confidence 99996
No 3
>PF13919 ASXH: Asx homology domain
Probab=94.94 E-value=0.017 Score=48.92 Aligned_cols=66 Identities=20% Similarity=0.189 Sum_probs=52.0
Q ss_pred CCCcccCCCccchhhhhcCchHHHhhccCCCCCCC------CHHHHH---HHhcChHHHHHHHHHHHHhhcCCcchh
Q 023646 200 GLGLGDILKPDLIMPLIETLPLEQRLAPYLPEGQW------TPEELL---ELLQSPPFRQQVDSFTYVRNWTPIFVT 267 (279)
Q Consensus 200 ~~~L~dvLtpe~l~plL~~~~~~~~L~~~LP~~~~------t~e~L~---~~l~SPQFqQal~~fs~AL~sG~l~~~ 267 (279)
.++|.+|+++++. ..| .++.+++|+.+||+-.. +...|+ ..++|++|+.++..|..-|..|..+.-
T Consensus 32 ~~dLr~L~N~~tw-~~L-~~eeq~eLl~LLP~~D~~~~~~~~~~~~~l~~S~lnn~~F~~a~~~fqe~L~~G~~~pe 106 (138)
T PF13919_consen 32 NADLRALLNPETW-SCL-PEEEQQELLKLLPEVDRQVGPDPPDDSLPLSESALNNEFFRDACQEFQERLAEGEFDPE 106 (138)
T ss_pred ccCHHHHhCHHHH-hcC-CHHHHHHHHHhCCCCCcccccCCCcccccCCHHHhcCHHHHHHHHHHHHHHHcCCCChH
Confidence 4567788888887 444 44568999999998642 344455 889999999999999999999998754
No 4
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=43.83 E-value=12 Score=38.12 Aligned_cols=35 Identities=26% Similarity=0.515 Sum_probs=24.2
Q ss_pred CcccceeeeCCceEEEEec--------------cCCCeEEEEEEcCCCcceEEE
Q 023646 61 VVEDDQIVFPHEAVFEKVN--------------QASGRVYILKFNTDDRKFFLW 100 (279)
Q Consensus 61 ~~edd~ii~Pgd~~f~~V~--------------~~tGRVy~LkF~ss~~~~fFW 100 (279)
++|-|+||| +..|+ ++.||||+|-+..+..-..||
T Consensus 441 Ip~vDlVif-----YEpvpSeIR~IQR~GRTGR~r~Grv~vLvt~gtrdeayy~ 489 (542)
T COG1111 441 IPEVDLVIF-----YEPVPSEIRSIQRKGRTGRKRKGRVVVLVTEGTRDEAYYY 489 (542)
T ss_pred CCcccEEEE-----ecCCcHHHHHHHhhCccccCCCCeEEEEEecCchHHHHHH
Confidence 467899999 66776 267999999996432333344
No 5
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=37.69 E-value=26 Score=31.61 Aligned_cols=35 Identities=20% Similarity=0.549 Sum_probs=26.1
Q ss_pred cccceeeeCCceEEEEecc-CCCeEEEEEEcCCCcceEEEccCCCC
Q 023646 62 VEDDQIVFPHEAVFEKVNQ-ASGRVYILKFNTDDRKFFLWMQEPKA 106 (279)
Q Consensus 62 ~edd~ii~Pgd~~f~~V~~-~tGRVy~LkF~ss~~~~fFWmQe~~~ 106 (279)
+--|+|++|.+. ..+|.+ |-|+=|. .|||.|.---
T Consensus 149 PAGdLVlypStS-lH~VtPVTRg~R~a---------sffW~qslir 184 (229)
T COG3128 149 PAGDLVLYPSTS-LHEVTPVTRGERFA---------SFFWIQSLIR 184 (229)
T ss_pred cCCCEEEccccc-ceeccccccCceEE---------EeeehHHHhh
Confidence 446899999854 788888 7675333 5999998754
No 6
>TIGR01204 bioW 6-carboxyhexanoate--CoA ligase. Alternate name: pimeloyl-CoA synthase.
Probab=36.47 E-value=1e+02 Score=28.47 Aligned_cols=20 Identities=35% Similarity=0.772 Sum_probs=15.2
Q ss_pred eeeEec---CCceeecCCCcEEEE
Q 023646 22 GKMTFD---GKKVVPDSRKGLVRI 42 (279)
Q Consensus 22 Gk~~~~---g~~V~pd~rkG~l~l 42 (279)
|=|.+| |+++.||..||+ ++
T Consensus 105 GA~llda~tG~RLe~d~~RGV-Rv 127 (232)
T TIGR01204 105 GAVLMDIETGERLDEDKEKGV-RV 127 (232)
T ss_pred ceEEEecCCCccccCCCCcce-EE
Confidence 556666 889999999995 44
No 7
>smart00569 L27 domain in receptor targeting proteins Lin-2 and Lin-7.
Probab=35.15 E-value=83 Score=21.19 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=24.1
Q ss_pred HhhccCCCCCCCCHHHHHHHhcChHHHHHHHHHHH
Q 023646 223 QRLAPYLPEGQWTPEELLELLQSPPFRQQVDSFTY 257 (279)
Q Consensus 223 ~~L~~~LP~~~~t~e~L~~~l~SPQFqQal~~fs~ 257 (279)
+.|.+.+... ...+.|+.++++|-|+..+..++.
T Consensus 10 ~~l~~~~~~~-~~~~~L~~ll~~~~~~all~~hd~ 43 (55)
T smart00569 10 EELQSLLSPS-EDLQELRRLLQSPHLQALLKIHDK 43 (55)
T ss_pred HHHHhccCCC-ccHHHHHHHHcCHHHHHHHHHHHH
Confidence 4444443322 356789999999999999988754
No 8
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=34.79 E-value=3.5e+02 Score=24.52 Aligned_cols=77 Identities=19% Similarity=0.392 Sum_probs=43.1
Q ss_pred ceeeEecCCceeecC-CC-cEEEEEeCC-C-CceEEEEeeCCCCCcccceeeeCCceEEEEecc-CCCeEEEEEEcC---
Q 023646 21 AGKMTFDGKKVVPDS-RK-GLVRIARGE-H-GLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQ-ASGRVYILKFNT--- 92 (279)
Q Consensus 21 AGk~~~~g~~V~pd~-rk-G~l~l~~~~-d-~l~hf~W~~R~~~~~edd~ii~Pgd~~f~~V~~-~tGRVy~LkF~s--- 92 (279)
|| +.+++++|.=.. .| -.|.|...+ + -.+-..|.+...+..+.+|++.|- +-|++. ....|=+++-..
T Consensus 25 Ag-i~i~~TRvIy~~~~~~~si~l~N~~~~~~~LvQsWv~~~~~~~~~pfivtPP---lfrl~p~~~q~lRIi~~~~~LP 100 (229)
T PRK15195 25 GG-IALGATRVIYPADAKQTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPP---LFVSEPKSENTLRIIYAGPPLA 100 (229)
T ss_pred ee-EEECCeEEEEeCCCceEEEEEEeCCCCccEEEEEEecCCCCCccCCEEEcCC---eEEECCCCceEEEEEECCCCCC
Confidence 56 557776653333 33 344554433 3 255566997554444467999998 778877 322222222111
Q ss_pred CCcceEEEc
Q 023646 93 DDRKFFLWM 101 (279)
Q Consensus 93 s~~~~fFWm 101 (279)
.++-..||+
T Consensus 101 ~DrESlf~L 109 (229)
T PRK15195 101 ADRESLFWM 109 (229)
T ss_pred CCeeEEEEE
Confidence 256788997
No 9
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=33.35 E-value=40 Score=32.85 Aligned_cols=52 Identities=12% Similarity=0.193 Sum_probs=41.7
Q ss_pred cchhhhhcCchHHHhhccCCCCCCCCH------------HHHHHHhcChHHHHHHHHHHHHhhc
Q 023646 210 DLIMPLIETLPLEQRLAPYLPEGQWTP------------EELLELLQSPPFRQQVDSFTYVRNW 261 (279)
Q Consensus 210 e~l~plL~~~~~~~~L~~~LP~~~~t~------------e~L~~~l~SPQFqQal~~fs~AL~s 261 (279)
+.++.+|+.-.+-.+|++++||..++. .+|.+..+.-||.-+..-+..+|++
T Consensus 200 ~~lis~Lrkg~md~rLmeffPpnkrs~E~Fak~Ft~agL~elvey~~~q~~~~a~kElq~~L~~ 263 (412)
T KOG2297|consen 200 NDLISSLRKGKMDDRLMEFFPPNKRSVEHFAKYFTDAGLKELVEYHRNQQSEGARKELQKELQE 263 (412)
T ss_pred HHHHHHHHhcChHhHHHHhcCCcchhHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777899999999986542 4567778999999999999999987
No 10
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=32.67 E-value=2.7e+02 Score=22.64 Aligned_cols=45 Identities=18% Similarity=0.184 Sum_probs=27.8
Q ss_pred EEEEeccCCCeEEEEEEcCCCcceEEEccCCCChhhHHHHHHHHHHhc
Q 023646 74 VFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFIN 121 (279)
Q Consensus 74 ~f~~V~~~tGRVy~LkF~ss~~~~fFWmQe~~~~~D~~~~~~in~~l~ 121 (279)
+......+--.||.|+-. +++.|+ +|-++.+.=..|+.+||....
T Consensus 68 ~ia~dy~Kr~~VF~L~~~-~g~~~l--fqA~~~ee~~~Wi~~I~~~~~ 112 (117)
T cd01230 68 TRASDYSKKPHVFRLRTA-DWREFL--FQTSSLKELQSWIERINVVAA 112 (117)
T ss_pred EeeccccCCCcEEEEEcC-CCCEEE--EECCCHHHHHHHHHHHHHHHH
Confidence 333333333445555542 334444 488888878899999998875
No 11
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=32.06 E-value=2.3e+02 Score=21.59 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=28.1
Q ss_pred ceEEEEecc--CCCeEEEEEEcCCCcceEEEccCCCChhhHHHHHHHHH
Q 023646 72 EAVFEKVNQ--ASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNY 118 (279)
Q Consensus 72 d~~f~~V~~--~tGRVy~LkF~ss~~~~fFWmQe~~~~~D~~~~~~in~ 118 (279)
.++...++. +.-.||.|+.. ....||+|-.+.+.=.+|+..|+.
T Consensus 58 ~~~i~~~~~~~k~~~~F~l~~~---~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 58 GAQCEVASDYTKKKHVFRLRLP---DGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred CCEEEecCCcccCceEEEEEec---CCCEEEEECCCHHHHHHHHHHHhc
Confidence 455555543 22356666642 235679999998877788888764
No 12
>PF14795 Leucyl-specific: Leucine-tRNA synthetase-specific domain; PDB: 1OBC_A 2BTE_A 2V0G_A 2BYT_A 1OBH_A 1H3N_A 2V0C_A.
Probab=32.00 E-value=30 Score=24.75 Aligned_cols=39 Identities=18% Similarity=0.478 Sum_probs=20.1
Q ss_pred EEEeceeeEecC-CceeecCCCcEEEE----------EeCCCCceEEEEee
Q 023646 17 LEFRAGKMTFDG-KKVVPDSRKGLVRI----------ARGEHGLIHFQWLD 56 (279)
Q Consensus 17 i~fkAGk~~~~g-~~V~pd~rkG~l~l----------~~~~d~l~hf~W~~ 56 (279)
|+.+-|++.+.. .++.=+-..|.|.+ ..-+||-+|| ||+
T Consensus 7 VeVeg~rvrL~e~~R~rLel~~~~Ls~ee~~KmGAELR~hedG~~h~-WKP 56 (56)
T PF14795_consen 7 VEVEGERVRLPEPTRIRLELEEGELSLEEVKKMGAELRPHEDGTLHF-WKP 56 (56)
T ss_dssp EEEETTEEE--HHHHHHHT-S-SEEEHHHHHHTT-EEEE-TTSSEEE-EEE
T ss_pred eEEeCCEEEcCcchhheeecccccccHHHHHhhchhcccCCCCeEee-cCC
Confidence 455555555543 44444555666654 2347898887 664
No 13
>PF08410 DUF1737: Domain of unknown function (DUF1737); InterPro: IPR013619 This domain of unknown function is found at the N terminus of bacterial and viral hypothetical proteins.
Probab=29.57 E-value=39 Score=24.22 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHhcCC
Q 023646 107 EEDSQLCNSVNYFINRP 123 (279)
Q Consensus 107 ~~D~~~~~~in~~l~~~ 123 (279)
..|.++|+||++.|+..
T Consensus 12 ~d~~~fc~rVt~aL~~G 28 (54)
T PF08410_consen 12 PDDSAFCHRVTEALNEG 28 (54)
T ss_pred CChHHHHHHHHHHHHcC
Confidence 46789999999999964
No 14
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=29.37 E-value=4.4e+02 Score=24.00 Aligned_cols=78 Identities=13% Similarity=0.342 Sum_probs=46.2
Q ss_pred eeeEecCCce-eecC-CCcEEEEEeCC-CC-ceEEEEeeCCCCCcccceeeeCCceEEEEeccCCCeEEEEEEcC----C
Q 023646 22 GKMTFDGKKV-VPDS-RKGLVRIARGE-HG-LIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFNT----D 93 (279)
Q Consensus 22 Gk~~~~g~~V-~pd~-rkG~l~l~~~~-d~-l~hf~W~~R~~~~~edd~ii~Pgd~~f~~V~~~tGRVy~LkF~s----s 93 (279)
+-+.+++++| -+.. +-..|.|...+ +. .+--.|.+...+.....||+.|- +.|++...+++..+.+.. .
T Consensus 27 Agi~l~~TRvIy~~~~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPP---lfrl~~~~~~~lRI~~~~~~lP~ 103 (228)
T PRK15188 27 GGIALGATRVIYPQGSKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPP---LFVIQPKKENILRIMYVGPSLPT 103 (228)
T ss_pred ceEEECcEEEEEcCCCceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCC---eEEECCCCceEEEEEECCCCCCC
Confidence 3366777654 3333 33455664443 32 55667997554444467999998 778877444444444432 3
Q ss_pred CcceEEEcc
Q 023646 94 DRKFFLWMQ 102 (279)
Q Consensus 94 ~~~~fFWmQ 102 (279)
++-..||+=
T Consensus 104 DRESlf~ln 112 (228)
T PRK15188 104 DRESVFYLN 112 (228)
T ss_pred CceEEEEEE
Confidence 567899973
No 15
>PTZ00449 104 kDa microneme/rhoptry antigen; Provisional
Probab=29.32 E-value=1.3e+02 Score=31.40 Aligned_cols=61 Identities=20% Similarity=0.478 Sum_probs=36.8
Q ss_pred CceeecCCCcEEEEEeC---------CCCceEEEEeeCCCCCcccceeeeCCceEEE--Eecc---CCCeEEEEEEcCCC
Q 023646 29 KKVVPDSRKGLVRIARG---------EHGLIHFQWLDRTRNVVEDDQIVFPHEAVFE--KVNQ---ASGRVYILKFNTDD 94 (279)
Q Consensus 29 ~~V~pd~rkG~l~l~~~---------~d~l~hf~W~~R~~~~~edd~ii~Pgd~~f~--~V~~---~tGRVy~LkF~ss~ 94 (279)
.||+|.+.+-+|.+.-+ -|+++--.|.--+.|. +.++ ||+. .+.-+|+|||.
T Consensus 405 ~mvtpkphrdii~v~dgsevlwyyegl~n~lvc~wiyvs~g~-----------~~lvhlrikdrip~n~diy~~k~~--- 470 (943)
T PTZ00449 405 FMVTPKPHRDIIIVFDGSEVLWYYEGLDNFLVCAWIYVSDGA-----------ARLVHLRIKDRIPANNDIYMLKFD--- 470 (943)
T ss_pred EEecCCCCcceEEEecCcEEEEeeccccceeEEEEEEecCCc-----------hheeEEeecccCCCCCceEEEecc---
Confidence 58999999999988432 2334444454444432 2222 2221 35679999995
Q ss_pred cceEEEccCCCC
Q 023646 95 RKFFLWMQEPKA 106 (279)
Q Consensus 95 ~~~fFWmQe~~~ 106 (279)
.||--=...
T Consensus 471 ---~yw~risk~ 479 (943)
T PTZ00449 471 ---EYWTRISKI 479 (943)
T ss_pred ---ceEEEeehh
Confidence 588754443
No 16
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=27.80 E-value=74 Score=31.74 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=30.1
Q ss_pred CeEEEEEEcCCCcceEEEccCCCChhhHHHHHHHHHHhc
Q 023646 83 GRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFIN 121 (279)
Q Consensus 83 GRVy~LkF~ss~~~~fFWmQe~~~~~D~~~~~~in~~l~ 121 (279)
--||+|.|.. +++ ||.|..+.+.-+.|+.+|++.|.
T Consensus 455 ~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 455 AHVFAVAFKT-GRR--LLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred CcEEEEEecC-CcE--EEEecCCchhHHHHHHHHHHhcC
Confidence 3799999964 444 68899999888899999999986
No 17
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=27.33 E-value=5e+02 Score=24.01 Aligned_cols=83 Identities=12% Similarity=0.129 Sum_probs=47.7
Q ss_pred eEEEeceeeEecCCceeecCCCc--EEEEEeCCCC-ceEEEEeeCCCCCcccceeeeCCceEEEEeccCCCeEEEEEEcC
Q 023646 16 LLEFRAGKMTFDGKKVVPDSRKG--LVRIARGEHG-LIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFNT 92 (279)
Q Consensus 16 li~fkAGk~~~~g~~V~pd~rkG--~l~l~~~~d~-l~hf~W~~R~~~~~edd~ii~Pgd~~f~~V~~~tGRVy~LkF~s 92 (279)
|...-|| +.+++++|.=...+. .|.|.-.++. .+-=.|.+...+.....||+.|- +.|++...+....+.+..
T Consensus 35 ~~~a~Ag-i~l~~TRvIy~~~~~~~sl~i~N~~~~p~LvQsWvd~~~~~~~~pFiVtPP---LfRLep~~~~~lRIi~~~ 110 (246)
T PRK15233 35 LTQKYYG-LRLGTTRVIYKEDAPSTSFWIMNEKEYPILVQTQVYNDDKSSKAPFIVTPP---ILKVESNARTRLKVIPTS 110 (246)
T ss_pred hhheeee-EEeCceEEEEeCCCcEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEECCC---eEEECCCCceEEEEEECC
Confidence 3344555 668887654443333 4444443332 33345887665444457999998 777877444444344433
Q ss_pred ----CCcceEEEcc
Q 023646 93 ----DDRKFFLWMQ 102 (279)
Q Consensus 93 ----s~~~~fFWmQ 102 (279)
.++-..||+=
T Consensus 111 ~~LP~DRESlfwln 124 (246)
T PRK15233 111 NLFNKNEESLYWLC 124 (246)
T ss_pred CCCCcCceEEEEEE
Confidence 2677899974
No 18
>PF14008 Metallophos_C: Iron/zinc purple acid phosphatase-like protein C; PDB: 3KBP_B 1KBP_B 4KBP_C 2QFP_B 2QFR_A 1XZW_B.
Probab=27.02 E-value=1.1e+02 Score=21.83 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=21.3
Q ss_pred ecCCCcEEEEEeCCCCceEEEEeeCCCCCcccc
Q 023646 33 PDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDD 65 (279)
Q Consensus 33 pd~rkG~l~l~~~~d~l~hf~W~~R~~~~~edd 65 (279)
-+..-|+.+|..-....++|+|..-.++.+-|+
T Consensus 29 r~~~~Gy~~l~v~N~T~l~~e~i~~~~g~v~D~ 61 (62)
T PF14008_consen 29 RDSEYGYGRLTVANATHLHWEFIRSDDGSVLDE 61 (62)
T ss_dssp EE---EEEEEEE-SSSEEEEEEEETTS-T-CEE
T ss_pred eccccCEEEEEEEcCCeEEEEEEECCCCcEecC
Confidence 446789999976678899999988877766554
No 19
>PRK13284 flagellar assembly protein FliW; Provisional
Probab=25.99 E-value=80 Score=26.85 Aligned_cols=41 Identities=20% Similarity=0.338 Sum_probs=24.4
Q ss_pred cccceeeeCCce-EEEEeccCCCeEEEEEEcCC-CcceEEEccCCCCh
Q 023646 62 VEDDQIVFPHEA-VFEKVNQASGRVYILKFNTD-DRKFFLWMQEPKAE 107 (279)
Q Consensus 62 ~edd~ii~Pgd~-~f~~V~~~tGRVy~LkF~ss-~~~~fFWmQe~~~~ 107 (279)
.|+++|.||.-. =|.. =|=|+|..... ...-|||||+-+..
T Consensus 14 ~e~~ii~Fp~Gi~GFe~-----~k~F~L~~~~~~~~~~f~~LQS~dd~ 56 (145)
T PRK13284 14 DPEKVITFPAGLPGFED-----CKRFKLFHEEGPPEPTVFWLQSLDDP 56 (145)
T ss_pred CccceEECCCCCCCCCc-----ccEEEEEecccCCCCCEEEEEeCCCC
Confidence 356777777532 2332 34566665322 24679999998764
No 20
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=25.45 E-value=5.2e+02 Score=23.51 Aligned_cols=78 Identities=17% Similarity=0.286 Sum_probs=43.3
Q ss_pred eceeeEecCCceeecCCC--cEEEEEeCCCCceEE-EEeeCCCCC-cccceeeeCCceEEEEeccCCCeEEEEEEcC---
Q 023646 20 RAGKMTFDGKKVVPDSRK--GLVRIARGEHGLIHF-QWLDRTRNV-VEDDQIVFPHEAVFEKVNQASGRVYILKFNT--- 92 (279)
Q Consensus 20 kAGk~~~~g~~V~pd~rk--G~l~l~~~~d~l~hf-~W~~R~~~~-~edd~ii~Pgd~~f~~V~~~tGRVy~LkF~s--- 92 (279)
.|| ..+++++|.=+..+ ..|.|.-.++.-+-+ .|.+..... ....||+.|- +.|++...+....+.+..
T Consensus 21 ~A~-v~l~~TRvIy~~~~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPP---lfrl~p~~~q~lRI~~~~~~L 96 (229)
T PRK15211 21 MAA-FVLNGTRFIYDEGRKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPP---FFKVRPKEKQIIRIMKTDSAL 96 (229)
T ss_pred eEE-EEECceEEEEcCCCceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCC---eEEECCCCceEEEEEECCCCC
Confidence 366 67888765443333 344554444443333 398765432 1245999988 777777333333333332
Q ss_pred -CCcceEEEc
Q 023646 93 -DDRKFFLWM 101 (279)
Q Consensus 93 -s~~~~fFWm 101 (279)
.++-..||+
T Consensus 97 P~DRESlf~l 106 (229)
T PRK15211 97 PKDRESLFWL 106 (229)
T ss_pred CCCceEEEEE
Confidence 267789996
No 21
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=25.21 E-value=2.7e+02 Score=29.48 Aligned_cols=59 Identities=19% Similarity=0.393 Sum_probs=36.6
Q ss_pred cceeeeCCceEEEEeccCCCeEEEEEEc----------------------------CCCcceEEEccCCCChhhHHHHHH
Q 023646 64 DDQIVFPHEAVFEKVNQASGRVYILKFN----------------------------TDDRKFFLWMQEPKAEEDSQLCNS 115 (279)
Q Consensus 64 dd~ii~Pgd~~f~~V~~~tGRVy~LkF~----------------------------ss~~~~fFWmQe~~~~~D~~~~~~ 115 (279)
|....+|.+.++.-|.. +|.|++=.-- -++.+-.|||-+.. .-|.++++|
T Consensus 420 dKTFe~~~~G~v~vvd~-~G~vl~eh~Ve~GDIwRmcq~KD~pI~DWVkLAV~Rar~tg~paiFWLD~~R-AHDa~lI~k 497 (735)
T PF03971_consen 420 DKTFEIPADGTVRVVDE-SGEVLMEHEVEAGDIWRMCQTKDAPIRDWVKLAVNRARATGTPAIFWLDENR-AHDAELIKK 497 (735)
T ss_dssp GGEEE-SSSEEEEEEET-TS-EEEEEEE-TT-EEEEEEE-HHHHHHHHHHHHHHHHHHT--EEEE--TTS-HHHHHHHHH
T ss_pred CcceECCCCcEEEEEeC-CCCEEEEeeecCCcchhhhcccCchHHHHHHHHHHHHHhhCCCeEEecCCCC-ccHHHHHHH
Confidence 56677788888877764 5555431110 06778899996544 458999999
Q ss_pred HHHHhcCCc
Q 023646 116 VNYFINRPL 124 (279)
Q Consensus 116 in~~l~~~~ 124 (279)
||.+|.+..
T Consensus 498 V~~yL~~hd 506 (735)
T PF03971_consen 498 VEKYLKDHD 506 (735)
T ss_dssp HHHHHTTS-
T ss_pred HHHHHHhcC
Confidence 999998765
No 22
>PF02828 L27: L27 domain; InterPro: IPR014775 The L27 domain is found in receptor targeting proteins Lin-2 and Lin-7, as well as some protein kinases and human MPP2 protein.; PDB: 1ZL8_B 1VA8_A 3LRA_A 3UIT_A 1Y74_D 1RSO_B.
Probab=25.16 E-value=43 Score=23.45 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=21.3
Q ss_pred CCHHHHHHHhcChHHHHHHHHHHHH
Q 023646 234 WTPEELLELLQSPPFRQQVDSFTYV 258 (279)
Q Consensus 234 ~t~e~L~~~l~SPQFqQal~~fs~A 258 (279)
....+|+.++++|.|+.=+..++.-
T Consensus 21 ~~~~eL~~lL~~p~~~aLl~~hD~v 45 (56)
T PF02828_consen 21 EDAQELQQLLQSPHFQALLEVHDKV 45 (56)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 4567899999999999999888764
No 23
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=25.03 E-value=82 Score=25.92 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=28.6
Q ss_pred HHHhhccCCCCCCC-CHHHHHHHhcChHHHHHHHHHHHHhh
Q 023646 221 LEQRLAPYLPEGQW-TPEELLELLQSPPFRQQVDSFTYVRN 260 (279)
Q Consensus 221 ~~~~L~~~LP~~~~-t~e~L~~~l~SPQFqQal~~fs~AL~ 260 (279)
+..+|...||.+.. -....+..++||++++--..+..|-|
T Consensus 32 le~~ls~~Lpadp~qA~~~~~~~l~sp~~~~~q~~l~~Ayq 72 (113)
T TIGR03757 32 LEAQLSAGLPADPQQAAAQARQRLQSPDWARLQRRLAQAYQ 72 (113)
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHcCccHHHHHHHHHHHHH
Confidence 56889999998743 33456999999998665555555543
No 24
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=24.72 E-value=1e+02 Score=25.38 Aligned_cols=40 Identities=25% Similarity=0.313 Sum_probs=30.5
Q ss_pred HHHhhccCCCCCCC-CHHHHHHHhcChHHHHHHHHHHHHhh
Q 023646 221 LEQRLAPYLPEGQW-TPEELLELLQSPPFRQQVDSFTYVRN 260 (279)
Q Consensus 221 ~~~~L~~~LP~~~~-t~e~L~~~l~SPQFqQal~~fs~AL~ 260 (279)
+..+|...||.... -....+..++||.|++--..+..|-+
T Consensus 31 le~~ls~~Lpadp~qA~~~~~~rl~s~~~~~~q~~L~~Ayq 71 (114)
T PF07511_consen 31 LEAELSAGLPADPQQAEAQARQRLQSPDWQQLQQQLAQAYQ 71 (114)
T ss_pred HHHHHhccCCCChHHHHHHHHHHHcCccHHHHHHHHHHHHH
Confidence 56889999998643 33456899999998887777776654
No 25
>PF14977 FAM194: FAM194 protein
Probab=23.68 E-value=1.5e+02 Score=26.79 Aligned_cols=41 Identities=20% Similarity=0.120 Sum_probs=34.1
Q ss_pred eeeeCCceEEEEeccCCCeEEEEEEcCCCcceEEEccCCCChh
Q 023646 66 QIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEE 108 (279)
Q Consensus 66 ~ii~Pgd~~f~~V~~~tGRVy~LkF~ss~~~~fFWmQe~~~~~ 108 (279)
.++||+-.-|..+|+ |+|-++....-..++-||.||.+.+.
T Consensus 18 ~~~f~DGsg~i~YPS--GnlAi~~~~~~~~~~~~~v~eD~~~~ 58 (208)
T PF14977_consen 18 HYMFPDGSGQIFYPS--GNLAICISPTCRGGFTYIVYEDSPEN 58 (208)
T ss_pred EEEcCCCCEEEEeCC--CCEEEEEeccCCCceEEEEEecCCCC
Confidence 588999999998984 99999999765556889999988764
No 26
>smart00727 STI1 Heat shock chaperonin-binding motif.
Probab=22.88 E-value=1e+02 Score=19.87 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=12.4
Q ss_pred HHHHHhcChHHHHHHHH
Q 023646 238 ELLELLQSPPFRQQVDS 254 (279)
Q Consensus 238 ~L~~~l~SPQFqQal~~ 254 (279)
++.+.+++|+|++.+..
T Consensus 3 ~~~~~l~~P~~~~~l~~ 19 (41)
T smart00727 3 EMALRLQNPQVQSLLQD 19 (41)
T ss_pred HHHHHHcCHHHHHHHHH
Confidence 46677778888887773
No 27
>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking
Probab=22.76 E-value=71 Score=27.13 Aligned_cols=18 Identities=33% Similarity=0.759 Sum_probs=12.4
Q ss_pred CeEEEEEEcCC-----CcceEEE
Q 023646 83 GRVYILKFNTD-----DRKFFLW 100 (279)
Q Consensus 83 GRVy~LkF~ss-----~~~~fFW 100 (279)
--||+|||.+| +++.+|.
T Consensus 110 ~GvYvLkFDNSYS~~rsK~l~Y~ 132 (136)
T PF13897_consen 110 PGVYVLKFDNSYSWFRSKKLYYR 132 (136)
T ss_pred CeEEEEEeeCcceeEEeeEEEEE
Confidence 35999999764 4555554
No 28
>PF06880 DUF1262: Protein of unknown function (DUF1262); InterPro: IPR010683 This family represents a conserved region within a number of proteins of unknown function that seem to be specific to Arabidopsis thaliana. Note that some family members contain more than one copy of this region.
Probab=22.55 E-value=4.3e+02 Score=21.51 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=34.8
Q ss_pred CCCcEEEEEeCCCCceE--EEEeeCCCCCc-------------------ccceeeeCCceEEEEecc---CCCeEEEEEE
Q 023646 35 SRKGLVRIARGEHGLIH--FQWLDRTRNVV-------------------EDDQIVFPHEAVFEKVNQ---ASGRVYILKF 90 (279)
Q Consensus 35 ~rkG~l~l~~~~d~l~h--f~W~~R~~~~~-------------------edd~ii~Pgd~~f~~V~~---~tGRVy~LkF 90 (279)
|--|+|.|. +|+.-.. .||.......+ .++-....+.+-|.+|.- .++|-|+++=
T Consensus 3 PnSG~LVIq-Dee~~~~~t~CfG~c~~~~v~~LPFPQN~~Ltv~~~~~~~~~~~t~~d~V~FIPVl~QPLSSnrYYvi~~ 81 (104)
T PF06880_consen 3 PNSGYLVIQ-DEEAETTETCCFGLCKDTRVRGLPFPQNKNLTVRYSSGHGENTTTYSDPVVFIPVLNQPLSSNRYYVIRR 81 (104)
T ss_pred CCceEEEEE-ccccCccccEEeeEcCCCccccCCCCCCCEEEEEEccCCCccceeecccEEEEEcCCCcCcCCcEEEEEe
Confidence 346888775 5565555 88866432211 122233467888999953 7899999985
No 29
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=22.18 E-value=5.8e+02 Score=22.96 Aligned_cols=77 Identities=10% Similarity=0.161 Sum_probs=42.5
Q ss_pred eeeEecCCceeecCCC--cEEEEEeCCC-CceEEEEeeCCCCCcccceeeeCCceEEEEeccCCCeEEEEEEc---CCCc
Q 023646 22 GKMTFDGKKVVPDSRK--GLVRIARGEH-GLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFN---TDDR 95 (279)
Q Consensus 22 Gk~~~~g~~V~pd~rk--G~l~l~~~~d-~l~hf~W~~R~~~~~edd~ii~Pgd~~f~~V~~~tGRVy~LkF~---ss~~ 95 (279)
+-+.+++++|.-+..+ +.|.|.-.++ -.+--.|.+........+||+.|- ..|++....++..+.+. ..++
T Consensus 24 a~v~l~~tRvi~~~~~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPP---l~rl~pg~~q~vRii~~~~lp~dr 100 (230)
T PRK09918 24 AGMVPETSVVIVEESDGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPP---VARVEPGQSQQVRFILKSGSPLNT 100 (230)
T ss_pred eeEEEccEEEEEECCCCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCC---eEEECCCCceEEEEEECCCCCCCe
Confidence 4466778776555443 4555544333 344467987544334468999998 66676622222222222 2356
Q ss_pred ceEEEc
Q 023646 96 KFFLWM 101 (279)
Q Consensus 96 ~~fFWm 101 (279)
-..||+
T Consensus 101 Es~f~l 106 (230)
T PRK09918 101 EHLLRV 106 (230)
T ss_pred eEEEEE
Confidence 677775
No 30
>PRK13285 flagellar assembly protein FliW; Provisional
Probab=22.07 E-value=1.1e+02 Score=26.09 Aligned_cols=40 Identities=33% Similarity=0.541 Sum_probs=22.8
Q ss_pred cccceeeeCCce-EEEEeccCCCeEEEEEEcCCCcceEEEccCCCCh
Q 023646 62 VEDDQIVFPHEA-VFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAE 107 (279)
Q Consensus 62 ~edd~ii~Pgd~-~f~~V~~~tGRVy~LkF~ss~~~~fFWmQe~~~~ 107 (279)
.|+++|.||.-. =|.. =|=|+|.- -....-|||||+-+..
T Consensus 14 ~e~~ii~Fp~Gi~GFe~-----~~~f~L~~-~~~~~pf~~LqS~dd~ 54 (148)
T PRK13285 14 DEEDIITFPEGIPGFED-----LKKFILLP-LEEDSPFLWLQSVEDP 54 (148)
T ss_pred ChhceEECCCCCCCCCc-----ccEEEEEe-cCCCCCEEEEEecCCC
Confidence 356777777422 2332 23455553 2234679999988653
No 31
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=20.95 E-value=3.2e+02 Score=26.89 Aligned_cols=34 Identities=12% Similarity=0.193 Sum_probs=22.0
Q ss_pred EEeCCCCceEEEEeeCCCCC---------------cccceeeeCCceEE
Q 023646 42 IARGEHGLIHFQWLDRTRNV---------------VEDDQIVFPHEAVF 75 (279)
Q Consensus 42 l~~~~d~l~hf~W~~R~~~~---------------~edd~ii~Pgd~~f 75 (279)
|....-..++|+|+...... ....++|.||+..=
T Consensus 256 l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~ 304 (426)
T PF14646_consen 256 LENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRN 304 (426)
T ss_pred EecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEE
Confidence 55555668999998876511 12456778887643
No 32
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=20.23 E-value=2.5e+02 Score=29.33 Aligned_cols=43 Identities=30% Similarity=0.444 Sum_probs=28.6
Q ss_pred cCCceeecCCCcEEEEEeC------------CCCceEEEEeeCCCCC---cccceeee
Q 023646 27 DGKKVVPDSRKGLVRIARG------------EHGLIHFQWLDRTRNV---VEDDQIVF 69 (279)
Q Consensus 27 ~g~~V~pd~rkG~l~l~~~------------~d~l~hf~W~~R~~~~---~edd~ii~ 69 (279)
||+.+--..+.|.|+|.-= =.||+-+||.+-..=+ -||||+-+
T Consensus 301 DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtV 358 (636)
T KOG2394|consen 301 DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTV 358 (636)
T ss_pred CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEE
Confidence 4677777788999999531 1389999998854311 25665543
Done!