Query 023646
Match_columns 279
No_of_seqs 132 out of 248
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 10:24:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023646.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023646hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kr0_A Proteasomal ubiquitin r 100.0 2.1E-71 7.3E-76 533.1 25.5 265 11-276 22-369 (411)
2 2r2y_A Protein ADRM1; proteaso 100.0 4.7E-49 1.6E-53 333.4 14.7 115 11-125 21-136 (153)
3 4b4t_X 26S proteasome regulato 100.0 1.4E-44 4.8E-49 307.5 11.0 112 12-124 3-133 (156)
4 2kqz_A Proteasomal ubiquitin r 99.9 2.3E-26 7.7E-31 195.6 4.7 104 172-276 6-113 (155)
5 3pp2_A RHO GTPase-activating p 67.2 7.2 0.00024 30.2 4.7 54 66-121 69-123 (124)
6 2dn6_A KIAA0640 protein; PH do 58.9 27 0.00094 25.4 6.5 54 65-122 49-104 (115)
7 1klf_A FIMC chaperone, chapero 53.1 86 0.0029 26.6 9.5 73 25-101 3-85 (205)
8 2xg5_A PAPD, chaperone protein 45.6 1.4E+02 0.0049 25.4 9.9 73 25-101 3-88 (218)
9 1upq_A PEPP1; PH domain, phosp 45.0 56 0.0019 24.0 6.3 49 73-122 60-110 (123)
10 2kzb_A Autophagy-related prote 42.9 22 0.00075 27.7 3.6 53 30-90 4-58 (118)
11 2ec1_A Nucleoporin 50 kDa; ran 41.0 1.3E+02 0.0044 23.6 9.5 105 11-119 10-122 (125)
12 1dro_A Beta-spectrin; cytoskel 32.6 41 0.0014 25.3 3.8 40 82-122 81-120 (122)
13 2llw_A Heat shock protein STI1 31.4 25 0.00086 25.3 2.2 43 212-258 22-64 (71)
14 4ay0_A Chaperone protein CAF1M 29.6 2.6E+02 0.009 23.8 10.6 76 21-101 12-97 (218)
15 2dkp_A Pleckstrin homology dom 29.4 1.2E+02 0.004 22.4 5.9 49 72-121 69-119 (128)
16 3cxb_B Pleckstrin homology dom 28.1 1.1E+02 0.0039 22.6 5.6 37 84-123 67-103 (112)
17 1x1g_A Pleckstrin 2; PH domain 27.8 1.8E+02 0.0062 21.3 8.2 39 85-124 89-127 (129)
18 2p0d_A RHO GTPase-activating p 27.0 2.1E+02 0.007 21.7 8.1 48 72-122 76-125 (129)
19 1v89_A Hypothetical protein KI 26.7 1.7E+02 0.006 20.8 7.1 53 71-123 54-114 (118)
20 1xc0_A Pardaxin P-4, PA4; BEND 26.0 71 0.0024 19.2 3.1 23 239-261 6-28 (33)
21 1l4i_A SFAE protein; periplasm 25.1 3.1E+02 0.01 23.0 9.6 73 25-101 3-85 (206)
22 1pls_A Pleckstrin homology dom 24.7 1.1E+02 0.0039 22.0 5.0 35 85-122 68-102 (113)
23 2aj7_A Hypothetical protein BH 24.2 67 0.0023 26.7 3.8 38 63-106 28-66 (163)
24 1pfj_A TFIIH basal transcripti 23.9 2.1E+02 0.0071 22.2 6.4 43 37-86 21-64 (108)
25 4h8s_A DCC-interacting protein 22.4 2.3E+02 0.0078 25.9 7.6 51 72-123 350-400 (407)
26 1x05_A Pleckstrin; PH domain, 22.3 2.3E+02 0.008 20.7 7.0 37 84-123 86-122 (129)
27 1wjm_A Beta-spectrin III; PH d 22.0 1.1E+02 0.0039 22.5 4.6 36 85-123 84-119 (123)
28 2d9y_A Pleckstrin homology dom 21.3 2.3E+02 0.0078 20.2 7.2 51 72-123 59-111 (117)
29 2kzk_A Uncharacterized protein 20.7 74 0.0025 24.2 3.0 37 46-90 16-52 (107)
No 1
>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens}
Probab=100.00 E-value=2.1e-71 Score=533.10 Aligned_cols=265 Identities=33% Similarity=0.600 Sum_probs=206.9
Q ss_pred CCCceeEEEeceeeEecCCceeecCCCcEEEEEeCCCCceEEEEeeCCCCCcccceeeeCCceEEEEecc-CCCeEEEEE
Q 023646 11 AMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQ-ASGRVYILK 89 (279)
Q Consensus 11 ~~~~~li~fkAGk~~~~g~~V~pd~rkG~l~l~~~~d~l~hf~W~~R~~~~~edd~ii~Pgd~~f~~V~~-~tGRVy~Lk 89 (279)
.+.++||+||||||+++|++|+||+|||+|||++.+|+|+||||++|+++.+|||+||||+|++|+||++ |||||||||
T Consensus 22 s~~~~lveFkAGk~~~~g~~V~Pd~rKG~l~l~~~ed~l~hf~W~~R~~~~~Eddlii~P~d~~f~~V~~c~tGRVyvLk 101 (411)
T 2kr0_A 22 ASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLK 101 (411)
T ss_dssp SCCSCSEEECEEEEEESSSSEEECCSCEEEEEEECTTSCEEEEEEESSSCCEEEEEEECTTSEEEEECTTCSSSCEEEEE
T ss_pred CCCceeEEEeCceEEecCCEEeecCCCcEEEEEeCCCCcEEEEEecCCCCCcccceEEcCCceEEEECCCCCCCeEEEEE
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EcCCCcceEEEccCCCChhhHHHHHHHHHHhcCCcccc-----cch-h------hccCCC--------cccccccc----
Q 023646 90 FNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFV-----NEE-E------LDASVP--------LQVSEDMV---- 145 (279)
Q Consensus 90 F~ss~~~~fFWmQe~~~~~D~~~~~~in~~l~~~~~~~-----~~~-~------~~~~~~--------~~~~~~~~---- 145 (279)
|+++++||||||||++.++|+++|++||++|+++++.. +.. . .+.++. .|++..+.
T Consensus 102 F~ss~~r~fFWmQe~~~~~D~~~~~~vN~ll~~~~~~~~~~~~gs~~~~~~~~g~e~dl~~~~~~~sq~qlmql~g~~g~ 181 (411)
T 2kr0_A 102 FKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGL 181 (411)
T ss_dssp ETTTCCEEEEEECCSCGGGHHHHHHHHHHHHHSCSCCSCSCCCSSCCCCSSCCCSCCCSCSCSSCCCSCCSSCCCCSSCC
T ss_pred ecCCCceeEEEecCCCcccHHHHHHHHHHHHhCCcccccccccCccccccccccccchhhhccccccHHHHHHhhhcccc
Confidence 99999999999999999999999999999999876421 000 0 000110 01111100
Q ss_pred -------------------cCCcccC-------CCCC--------CCCCCCC-C-------------------CccCCCC
Q 023646 146 -------------------EDDVSSR-------AGNL--------VVPNLGG-E-------------------AISDVTS 171 (279)
Q Consensus 146 -------------------~~~~ss~-------~~~~--------~~~~~~~-~-------------------~~~~~~~ 171 (279)
.....++ +..+ ..+.+.+ + +++..++
T Consensus 182 ~~~~gl~~~~gp~~~~~~~s~~~~~~~~s~~~~~~~~~~tp~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (411)
T 2kr0_A 182 GGLGGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGASTAAS 261 (411)
T ss_dssp CSTTCSCCCCCCSTTTTTCSCCCCSSSCCCCSCCCCCCCCTTSCCCCCCSCCCCCCCSSCCCSSCCCCSCCSSSSSTTTS
T ss_pred ccccccccccCcccccccccCCCccccccccccccccccccccccccccccccccccccccccccccccccccCCccccc
Confidence 0000000 0000 0000000 0 0001112
Q ss_pred CCCCcchhHHHHHHhccCCCCCCCCCCCCCCcccCCCccchhhhhcCchHHHhhccCCCCCC---CCHHHHHHHhcChHH
Q 023646 172 SSGPVKLEDLQRIFSNIGPADITEDPDGGLGLGDILKPDLIMPLIETLPLEQRLAPYLPEGQ---WTPEELLELLQSPPF 248 (279)
Q Consensus 172 ~~~~~~l~~Lq~iL~~l~~~~~~~~~~~~~~L~dvLtpe~l~plL~~~~~~~~L~~~LP~~~---~t~e~L~~~l~SPQF 248 (279)
+.+++++++||+||++|+..... ..+++++|+|||+||+|.|||+|++++++|++|||+++ +++++|+++||||||
T Consensus 262 ~~~~i~l~dLq~iLasl~~~~~~-~~~~~v~L~dvLt~e~l~pll~d~e~~erL~~~LP~~~~~~~t~e~L~e~l~SPQF 340 (411)
T 2kr0_A 262 PTQPIQLSDLQSILATMNVPAGP-AGGQQVDLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQF 340 (411)
T ss_dssp CCCCSSHHHHHHHHHHHTSSSCT-TCSHHHHGGGTSCHHHHHHHHTSHHHHHHHGGGCCSSCCCCCSHHHHTTSCCSHHH
T ss_pred cCCcccHHHHHHHHHhhcccccc-ccCCCCCHHHhhCHHHHHHHhcCHHHHHHHHhhCCCCcCcCCCHHHHHHHhcCHHH
Confidence 34568999999999999743222 14568999999999999999999999999999999986 399999999999999
Q ss_pred HHHHHHHHHHhhcCCcchh-hhcCCccCC
Q 023646 249 RQQVDSFTYVRNWTPIFVT-FHFGKRVAN 276 (279)
Q Consensus 249 qQal~~fs~AL~sG~l~~~-~~~g~~~~~ 276 (279)
+|+|++|++|||+|+|+.+ .||||++++
T Consensus 341 ~QaL~~fs~AL~sGqL~pll~qfgL~~~~ 369 (411)
T 2kr0_A 341 QQALGMFSAALASGQLGPLMCQFGLPAEA 369 (411)
T ss_dssp HHHHHHHHHHHHHTSSTHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHhCCChhh
Confidence 9999999999999999966 799998754
No 2
>2r2y_A Protein ADRM1; proteasome, ubiquitin, PH-domain, 19S regulator, receptor, U proteasome-degradation pathway; 1.70A {Mus musculus} PDB: 2z59_A
Probab=100.00 E-value=4.7e-49 Score=333.36 Aligned_cols=115 Identities=50% Similarity=0.941 Sum_probs=106.9
Q ss_pred CCCceeEEEeceeeEecCCceeecCCCcEEEEEeCCCCceEEEEeeCCCCCcccceeeeCCceEEEEecc-CCCeEEEEE
Q 023646 11 AMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQ-ASGRVYILK 89 (279)
Q Consensus 11 ~~~~~li~fkAGk~~~~g~~V~pd~rkG~l~l~~~~d~l~hf~W~~R~~~~~edd~ii~Pgd~~f~~V~~-~tGRVy~Lk 89 (279)
.+.++||+||||||+++|++|+||+|||+|||++++|+|+||||++|+++.+|||+||||+|++|++|++ +|||||+||
T Consensus 21 ~~~~~lveFkAGkm~l~g~~V~Pd~rKG~l~l~~~ed~l~hf~W~~R~t~~vEdDlIi~P~d~~F~kV~~c~tGRVyvLk 100 (153)
T 2r2y_A 21 SSTKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEFKRVPQCPSGRVYVLK 100 (153)
T ss_dssp ----CCEEEEEEEEEEETTEEEECCSCEEEEEEECTTSCEEEEEEETTTCCEEEEEECCTTSEEEEECTTCTTSCEEEEE
T ss_pred cCCceeEEEeCceEEecCCEEeECCCCEEEEEEECCCCcEEEEEecCCCCCccceEEEcCCCeEEEECCCCCCCeEEEEE
Confidence 6679999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EcCCCcceEEEccCCCChhhHHHHHHHHHHhcCCcc
Q 023646 90 FNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLV 125 (279)
Q Consensus 90 F~ss~~~~fFWmQe~~~~~D~~~~~~in~~l~~~~~ 125 (279)
|+++++||||||||++.++|+++|++||++|++|++
T Consensus 101 F~ss~~r~FFWmQe~~~~~D~~~~~kvN~lL~~p~~ 136 (153)
T 2r2y_A 101 FKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNPPM 136 (153)
T ss_dssp ETTTCCEEEEEECSSSSTTHHHHHHHHHHHHHC---
T ss_pred ecCCCceEEEEecCCCcccHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999998863
No 3
>4b4t_X 26S proteasome regulatory subunit RPN13; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} PDB: 2z4d_A
Probab=100.00 E-value=1.4e-44 Score=307.53 Aligned_cols=112 Identities=25% Similarity=0.568 Sum_probs=99.4
Q ss_pred CCceeEEEeceeeEecC--CceeecCCCcEEEEEeCCC---CceEEEEeeCCCCC----cccceeeeCCceEEEEecc-C
Q 023646 12 MQEILLEFRAGKMTFDG--KKVVPDSRKGLVRIARGEH---GLIHFQWLDRTRNV----VEDDQIVFPHEAVFEKVNQ-A 81 (279)
Q Consensus 12 ~~~~li~fkAGk~~~~g--~~V~pd~rkG~l~l~~~~d---~l~hf~W~~R~~~~----~edd~ii~Pgd~~f~~V~~-~ 81 (279)
+.++||+||||||.+++ |+|+|++|||+|||++++| ||+||||++|+++. +|+|+||||||++|++|++ +
T Consensus 3 ~s~~li~FkAGk~~~~~~tk~v~Pd~rKG~i~l~~~~d~~~~l~hf~W~~R~~~~~~~~~~~dlii~P~d~~f~~v~~c~ 82 (156)
T 4b4t_X 3 MSSTVIKFRAGVCEYNEDSRLCTPIPVQGEIEIKPNEEEELGFWDFEWRPTEKPVGRELDPISLILIPGETMWVPIKSSK 82 (156)
T ss_dssp ----CEEECEEEEEEETTTTEEEECSCCCBEEEESCSSSSSCCCEEECBSCSCCSSCCCCCCEECCCTTTSEEECCSSCS
T ss_pred CCceeEEEeCceEEEcCCccEEeecCCceEEEEEECCCCCcceEEEEEecCCCCCcCCCCccceEEcCCceEEEEcCCCC
Confidence 45789999999999986 6899999999999999877 69999999999764 3459999999999999999 9
Q ss_pred CCeEEEEEEcCCCcceEEEccCCCC---------hhhHHHHHHHHHHhcCCc
Q 023646 82 SGRVYILKFNTDDRKFFLWMQEPKA---------EEDSQLCNSVNYFINRPL 124 (279)
Q Consensus 82 tGRVy~LkF~ss~~~~fFWmQe~~~---------~~D~~~~~~in~~l~~~~ 124 (279)
|||||+||| +|++||||||||+++ ++|.++|++||++||++.
T Consensus 83 tGRVyvLkF-ss~~r~fFWmQe~~~~~~~~~~~s~kD~~~~~~vn~lL~~~~ 133 (156)
T 4b4t_X 83 SGRIFALVF-SSNERYFFWLQEKNSGNLPLNELSAKDKEIYNKMIGVLNNSS 133 (156)
T ss_dssp SCCEEEEEC-SSSCCEEEEECSSCSSSSSSCCCSSSSHHHHHHHHHHHHCC-
T ss_pred CcEEEEEEe-cCCCcEEEEeecCCccCCcccccchhHHHHHHHHHHHhcCCc
Confidence 999999999 678999999999986 679999999999999876
No 4
>2kqz_A Proteasomal ubiquitin receptor ADRM1; proteasome, UCH37-binding domain, protein binding; NMR {Homo sapiens} PDB: 2l5v_A
Probab=99.92 E-value=2.3e-26 Score=195.58 Aligned_cols=104 Identities=26% Similarity=0.495 Sum_probs=92.4
Q ss_pred CCCCcchhHHHHHHhccCCCCCCCCCCCCCCcccCCCccchhhhhcCchHHHhhccCCCCCCC---CHHHHHHHhcChHH
Q 023646 172 SSGPVKLEDLQRIFSNIGPADITEDPDGGLGLGDILKPDLIMPLIETLPLEQRLAPYLPEGQW---TPEELLELLQSPPF 248 (279)
Q Consensus 172 ~~~~~~l~~Lq~iL~~l~~~~~~~~~~~~~~L~dvLtpe~l~plL~~~~~~~~L~~~LP~~~~---t~e~L~~~l~SPQF 248 (279)
+.+++++++||+||++|+..+.. ..+++++|+|||+|+++.|||+|++++++|++||||++. ++++|+++||||||
T Consensus 6 ~~~~i~l~~lq~il~sl~~~~~~-~~~~~~~L~dvLt~e~l~~ll~d~~~~~~L~~~LP~~~~~~~~~e~L~~~l~SPQF 84 (155)
T 2kqz_A 6 PTQPIQLSDLQSILATMNVPAGP-AGGQQVDLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQF 84 (155)
T ss_dssp SCCCCSTTHHHHHHHHTCCCCCC-CSSSHHHHHHHTCTTTSHHHHHSHHHHHHHHHHSCSSCCCCSSHHHHHSSCCSHHH
T ss_pred CCCCccHHHHHHHHHHhcccccc-CCCCCCCHHHHhCHHHHHHHHcCHHHHHHHHhhCCCCCCCCCCHHHHHHHHcCHHH
Confidence 35678999999999999743322 146789999999999999999999999999999999974 99999999999999
Q ss_pred HHHHHHHHHHhhcCCcchh-hhcCCccCC
Q 023646 249 RQQVDSFTYVRNWTPIFVT-FHFGKRVAN 276 (279)
Q Consensus 249 qQal~~fs~AL~sG~l~~~-~~~g~~~~~ 276 (279)
+|+|++|++|||+|+|+.+ .||||++.+
T Consensus 85 ~Qal~~fs~AL~sG~l~~vl~qfgl~~~~ 113 (155)
T 2kqz_A 85 QQALGMFSAALASGQLGPLMCQFGLPAEA 113 (155)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHcCCChhh
Confidence 9999999999999999966 699998764
No 5
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=67.19 E-value=7.2 Score=30.15 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=33.9
Q ss_pred eeeeCCceEEEEec-cCCCeEEEEEEcCCCcceEEEccCCCChhhHHHHHHHHHHhc
Q 023646 66 QIVFPHEAVFEKVN-QASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFIN 121 (279)
Q Consensus 66 ~ii~Pgd~~f~~V~-~~tGRVy~LkF~ss~~~~fFWmQe~~~~~D~~~~~~in~~l~ 121 (279)
.|-+.+ +...... ..+.|=++++....+.+.|+ +|-.+.+.-.+|+..|+..|+
T Consensus 69 ~i~L~~-a~v~~~~~d~~krk~vF~l~t~~~~~yl-fqA~s~~e~~~Wi~aI~~aI~ 123 (124)
T 3pp2_A 69 TVELRG-ATLSWAPKDKSSRKNVLELRSRDGSEYL-IQHDSEAIISTWHKAIAQGIQ 123 (124)
T ss_dssp EEECTT-CEEEECCGGGCSSSSEEEEECTTSCEEE-EECSCHHHHHHHHHHHHHHHC
T ss_pred eEEcCC-CEEEecccccCCCceEEEEECCCCCEEE-EECCCHHHHHHHHHHHHHHHh
Confidence 343434 5566653 33444445554444444433 898888888899999999885
No 6
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.91 E-value=27 Score=25.42 Aligned_cols=54 Identities=11% Similarity=0.316 Sum_probs=33.7
Q ss_pred ceeeeCCceEEEEeccCCCe--EEEEEEcCCCcceEEEccCCCChhhHHHHHHHHHHhcC
Q 023646 65 DQIVFPHEAVFEKVNQASGR--VYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINR 122 (279)
Q Consensus 65 d~ii~Pgd~~f~~V~~~tGR--Vy~LkF~ss~~~~fFWmQe~~~~~D~~~~~~in~~l~~ 122 (279)
..|-+.+.+....++..+++ +|.+. ..++. |.|+-.+.+.-.+|+..|+.++..
T Consensus 49 g~i~L~~~~~v~~~~~~~~~~~~F~i~--~~~r~--~~l~a~s~~e~~~Wi~ai~~~~~~ 104 (115)
T 2dn6_A 49 GDILLDENCCVESLPDKDGKKCLFLVK--CFDKT--FEISASDKKKKQEWIQAIHSTIHL 104 (115)
T ss_dssp EEECCCTTCEEEEECCCTTCCSEEEEE--CSSCE--EEEECSSHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCcEEEEECCCCCCCeeEEEEE--eCCCE--EEEEcCCHHHHHHHHHHHHHHHHH
Confidence 34444454555556543454 55554 33444 445777777777999999999874
No 7
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=53.08 E-value=86 Score=26.61 Aligned_cols=73 Identities=16% Similarity=0.385 Sum_probs=43.9
Q ss_pred EecCCceeec--CCCcEEEEEeCCCC---ceEEEEeeCCCCCcccceeeeCCceEEEEeccCCCeEEEEEE-cC----CC
Q 023646 25 TFDGKKVVPD--SRKGLVRIARGEHG---LIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKF-NT----DD 94 (279)
Q Consensus 25 ~~~g~~V~pd--~rkG~l~l~~~~d~---l~hf~W~~R~~~~~edd~ii~Pgd~~f~~V~~~tGRVy~LkF-~s----s~ 94 (279)
.+++++|.=. .+-..|.|.-.++. |++ .|.+...+.....||+.|- +.|++...+.+..+.+ .. .+
T Consensus 3 ~l~~TRvIy~~~~k~~sl~l~N~~~~~p~LvQ-sWi~~~~~~~~~pfivtPP---l~rl~p~~~q~lRI~~~~~~~lP~D 78 (205)
T 1klf_A 3 ALGATRVIYPAGQKQVQLAVTNNDENSTYLIQ-SWVENADGVKDGRFIVTPP---LFAMKGKKENTLRILDATNNQLPQD 78 (205)
T ss_dssp EESCSEEEEETTCSEEEEEEEECCSSCCEEEE-EEEEETTSCCCSSEEEESS---EEEECSSEEEEEEEEECSCSCSCSS
T ss_pred EecceEEEEeCCCcEEEEEEEcCCCCCcEEEE-EEEecCCCCccCCEEEcCC---eEEECCCCceEEEEEecCCCCCCCC
Confidence 4667654333 33445566554444 555 4987655545678999998 7788873344444444 22 25
Q ss_pred cceEEEc
Q 023646 95 RKFFLWM 101 (279)
Q Consensus 95 ~~~fFWm 101 (279)
+-..||+
T Consensus 79 rEslf~l 85 (205)
T 1klf_A 79 RESLFWM 85 (205)
T ss_dssp SCEEEEE
T ss_pred ceEEEEE
Confidence 6789996
No 8
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=45.62 E-value=1.4e+02 Score=25.44 Aligned_cols=73 Identities=15% Similarity=0.362 Sum_probs=42.8
Q ss_pred EecCCceeec--CCCcEEEEEeCCCC---ceEEEEeeCCCCC-c-ccceeeeCCceEEEEeccCCCeEEEEEEcC-----
Q 023646 25 TFDGKKVVPD--SRKGLVRIARGEHG---LIHFQWLDRTRNV-V-EDDQIVFPHEAVFEKVNQASGRVYILKFNT----- 92 (279)
Q Consensus 25 ~~~g~~V~pd--~rkG~l~l~~~~d~---l~hf~W~~R~~~~-~-edd~ii~Pgd~~f~~V~~~tGRVy~LkF~s----- 92 (279)
.+++++|.=. .+-..|.|.-.++. |++ .|.+...+. . ...||+.|- +.|++...+.+..+.+..
T Consensus 3 ~l~~TRvIy~~~~k~~sl~l~N~~~~~p~LvQ-sWi~~~~~~~~~~~pfivtPP---l~rl~p~~~q~lRI~~~~~~~~l 78 (218)
T 2xg5_A 3 SLDRTRAVFDGSEKSMTLDISNDNKQLPYLAQ-AWIENENQEKIITGPVIATPP---VQRLEPGAKSMVRLSTTPDISKL 78 (218)
T ss_dssp EESCSEEEEETTSSEEEEEEEECCSSSCEEEE-EEEECTTSCEECSSSEEEECS---EEEECTTCEEEEEEEECGGGGGS
T ss_pred EeCceEEEEeCCCCEEEEEEEcCCCCCcEEEE-EEEecCCCCccccCCEEEcCC---eEEECCCCceEEEEEecCCCCCC
Confidence 4566654333 33345556554444 454 498765432 2 457999998 778887444444444433
Q ss_pred -CCcceEEEc
Q 023646 93 -DDRKFFLWM 101 (279)
Q Consensus 93 -s~~~~fFWm 101 (279)
.++-..||+
T Consensus 79 P~DrESlf~l 88 (218)
T 2xg5_A 79 PQDRESLFYF 88 (218)
T ss_dssp CSSSCEEEEE
T ss_pred CCCceEEEEE
Confidence 357789996
No 9
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=44.99 E-value=56 Score=24.04 Aligned_cols=49 Identities=6% Similarity=0.007 Sum_probs=32.3
Q ss_pred eEEEEecc--CCCeEEEEEEcCCCcceEEEccCCCChhhHHHHHHHHHHhcC
Q 023646 73 AVFEKVNQ--ASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINR 122 (279)
Q Consensus 73 ~~f~~V~~--~tGRVy~LkF~ss~~~~fFWmQe~~~~~D~~~~~~in~~l~~ 122 (279)
++...+.. ..++-|+++..+.+.+. |.|+-.+.+.=.+|+..|+.++..
T Consensus 60 ~~v~~~~~~~~~~~~~~f~i~~~~~r~-~~l~a~s~~e~~~Wi~al~~a~~~ 110 (123)
T 1upq_A 60 YNIRPDGPGAPRGRRFTFTAEHPGMRT-YVLAADTLEDLRGWLRALGRASRA 110 (123)
T ss_dssp CEEEECCSSCTTSSSSEEEEECTTSCC-EEEECSSHHHHHHHHHHHHHHHC-
T ss_pred CEEEECCCCccCCCcEEEEEECCCCeE-EEEECCCHHHHHHHHHHHHHHHhc
Confidence 45555543 45677777765544333 337777777777999999999974
No 10
>2kzb_A Autophagy-related protein 19; selective autophagy, ATG19, alpha-mannosidase, protein trans; NMR {Saccharomyces cerevisiae}
Probab=42.93 E-value=22 Score=27.65 Aligned_cols=53 Identities=15% Similarity=0.258 Sum_probs=33.0
Q ss_pred cee-ecCCCcEEEEEeCCCCceEEEEeeCCCCCcccceeeeCCceEEEEecc-CCCeEEEEEE
Q 023646 30 KVV-PDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQ-ASGRVYILKF 90 (279)
Q Consensus 30 ~V~-pd~rkG~l~l~~~~d~l~hf~W~~R~~~~~edd~ii~Pgd~~f~~V~~-~tGRVy~LkF 90 (279)
+|+ |..+-=.|.+.. .|.++||+-.+.+. +++||+|+|+.-.. .---|+..|.
T Consensus 4 ~~~~pn~~sL~Itvs~-rDnsL~F~lyNntn-------~~lpGnCtl~fs~~g~~ptv~si~m 58 (118)
T 2kzb_A 4 MVEPPNERSLQITMNQ-RDNSLYFQLFNNTN-------SVLAGNCKLKFTDAGDKPTTQIIDM 58 (118)
T ss_dssp -CCCSSCCCEEEEEEE-ETTEEEEEEEECSS-------SCCCSSCEECCCSSSSSCCCCCEEC
T ss_pred cccCCCCccEEEEEec-CCCeEEEEEecCCc-------eeccCccEEEEecCCCCceEEEEec
Confidence 443 333444455544 68899999998765 56899999987553 2223555543
No 11
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.02 E-value=1.3e+02 Score=23.57 Aligned_cols=105 Identities=8% Similarity=0.103 Sum_probs=57.8
Q ss_pred CCCceeEEEeceeeEecCCceeecCCCcEEEEEeCCCCceEEEEeeCCC-CCcccceeeeCCceEEEEeccCCCeEEEEE
Q 023646 11 AMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTR-NVVEDDQIVFPHEAVFEKVNQASGRVYILK 89 (279)
Q Consensus 11 ~~~~~li~fkAGk~~~~g~~V~pd~rkG~l~l~~~~d~l~hf~W~~R~~-~~~edd~ii~Pgd~~f~~V~~~tGRVy~Lk 89 (279)
-....|++.||=-..++++. --+.--|.|+|.+..++-..+.=+...+ +.+=...+|.|+ ..+++..+ .++.++.
T Consensus 10 E~E~~lf~~raKLf~~~~~~-WkERGvG~lki~~~k~~k~RllmR~d~~~~kv~lN~~i~~~-m~~~~~g~--~~~~~~~ 85 (125)
T 2ec1_A 10 KEEDAFYSKKCKLFYKKDNE-FKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPN-MPCTRTGK--NNVLIVC 85 (125)
T ss_dssp CCCSCSEEEEEEEEEECSSS-EEEEEEEEEEEEECSSSSEEEEEEESSSSCCBSCCEECCSS-CCEECCTT--TEEEEEE
T ss_pred cCceeEEEEeeEEEEecCCC-cccccEEEEEeeecCCCcEEEEEEecCCCCEEEEeeEEcCC-CeEEecCC--CcEEEEE
Confidence 45567888888444444421 1123357788877667777766665544 566677788875 45555422 2333333
Q ss_pred EcC---CCc----ceEEEccCCCChhhHHHHHHHHHH
Q 023646 90 FNT---DDR----KFFLWMQEPKAEEDSQLCNSVNYF 119 (279)
Q Consensus 90 F~s---s~~----~~fFWmQe~~~~~D~~~~~~in~~ 119 (279)
... ++. ..-|=+.=++.+.-.++.+.|+++
T Consensus 86 ~~~~~~d~~~~~~~~~~~lrfk~~e~a~~f~~~~~e~ 122 (125)
T 2ec1_A 86 VPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEK 122 (125)
T ss_dssp CCSSCSCSSSSSSCEEEEEECSSHHHHHHHHHHHHHH
T ss_pred ccCCcccCCCCCceEEEEEEECCHHHHHHHHHHHHHh
Confidence 211 111 334445555555555666666654
No 12
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=32.56 E-value=41 Score=25.27 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=26.6
Q ss_pred CCeEEEEEEcCCCcceEEEccCCCChhhHHHHHHHHHHhcC
Q 023646 82 SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINR 122 (279)
Q Consensus 82 tGRVy~LkF~ss~~~~fFWmQe~~~~~D~~~~~~in~~l~~ 122 (279)
+.|-|+++....+.+. |-+|-.+.+.-.+|+..||..|+.
T Consensus 81 ~kr~~~F~l~t~~~~~-~lfqA~s~~e~~~Wi~ai~~~i~~ 120 (122)
T 1dro_A 81 TKKKHVLRVKLANGAL-FLLQAHDDTEMSQWVTSLKAQSDS 120 (122)
T ss_dssp SSSTTEEEEECSSSCE-EEEECSSSHHHHHHHHHHHHHHTC
T ss_pred CCCCeEEEEEEcCCCE-EEEECCCHHHHHHHHHHHHHHHHh
Confidence 3444444443333332 337999988888999999999975
No 13
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=31.43 E-value=25 Score=25.29 Aligned_cols=43 Identities=14% Similarity=0.321 Sum_probs=29.6
Q ss_pred hhhhhcCchHHHhhccCCCCCCCCHHHHHHHhcChHHHHHHHHHHHH
Q 023646 212 IMPLIETLPLEQRLAPYLPEGQWTPEELLELLQSPPFRQQVDSFTYV 258 (279)
Q Consensus 212 l~plL~~~~~~~~L~~~LP~~~~t~e~L~~~l~SPQFqQal~~fs~A 258 (279)
+..++.||+++..|.. -...+..+.+.+.+|.|++-++.|..|
T Consensus 22 i~~im~DP~~~~~lq~----~~~NP~~~~k~~~nP~v~~~i~kl~~a 64 (71)
T 2llw_A 22 VAAIMQDPVMQSILQQ----AQQNPAALQEHMKNPEVFKKIQTLIAA 64 (71)
T ss_dssp HHHHHTCTHHHHHHHH----HHHCHHHHHHHHHSHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHH----HHHCHHHHHHHHhCHHHHHHHHHHHHc
Confidence 4456666666555543 123667888999999999988888654
No 14
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=29.63 E-value=2.6e+02 Score=23.81 Aligned_cols=76 Identities=17% Similarity=0.316 Sum_probs=43.2
Q ss_pred ceeeEecCCce-eecCCCc-EEEEEeCCCC--ceEEEEeeCCCC--CcccceeeeCCceEEEEeccCCCeEEEEEEcC--
Q 023646 21 AGKMTFDGKKV-VPDSRKG-LVRIARGEHG--LIHFQWLDRTRN--VVEDDQIVFPHEAVFEKVNQASGRVYILKFNT-- 92 (279)
Q Consensus 21 AGk~~~~g~~V-~pd~rkG-~l~l~~~~d~--l~hf~W~~R~~~--~~edd~ii~Pgd~~f~~V~~~tGRVy~LkF~s-- 92 (279)
|| +.++|++| .|-..|. .|.|.-.++. |++ .|.+...+ ..+..||+.|- +.|++...+.+..+.+..
T Consensus 12 ag-v~l~~TRvIy~~~~k~~sl~l~N~~~~p~LvQ-swv~~~~~~~~~~~pFivtPP---l~Rl~p~~~q~lRI~~~~~~ 86 (218)
T 4ay0_A 12 YG-VTIGESRIIYPLDAAGVMVSVKNTQDYPVLIQ-SRIYDENKEKESEDPFVVTPP---LFRLDAKQQNSLRIAQAGGV 86 (218)
T ss_dssp -C-EEESCCEEEEETTCSCEEEEEECCSSSCEEEE-EEEECTTSCCCSSCSEEEESS---EEEECTTCEEEEEEEECSCC
T ss_pred ee-EEECceEEEECCCCcEEEEEEEcCCCCCEEEE-EEEecCCCCccccCCEEECCC---eEEeCCCCceEEEEEecCCC
Confidence 56 45788765 4444443 3455443332 333 58765443 23456999998 778887444444444433
Q ss_pred --CCcceEEEc
Q 023646 93 --DDRKFFLWM 101 (279)
Q Consensus 93 --s~~~~fFWm 101 (279)
.++-..||+
T Consensus 87 LP~DRESlf~l 97 (218)
T 4ay0_A 87 FPRDKESLKWL 97 (218)
T ss_dssp CCSSSCEEEEE
T ss_pred CCcCcEEEEEE
Confidence 256789995
No 15
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=29.42 E-value=1.2e+02 Score=22.38 Aligned_cols=49 Identities=8% Similarity=0.014 Sum_probs=30.3
Q ss_pred ceEEEEecc--CCCeEEEEEEcCCCcceEEEccCCCChhhHHHHHHHHHHhc
Q 023646 72 EAVFEKVNQ--ASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFIN 121 (279)
Q Consensus 72 d~~f~~V~~--~tGRVy~LkF~ss~~~~fFWmQe~~~~~D~~~~~~in~~l~ 121 (279)
.+....+.. ..+|-|++.....+.+. |.|+-.+.+.=.+|+..|+.++.
T Consensus 69 ~~~v~~~~~~~~~~~~~~F~i~~~~~r~-~~l~a~s~~e~~~Wi~al~~a~~ 119 (128)
T 2dkp_A 69 SFQIALLTSEDHINRKYAFKAAHPNMRT-YYFCTDTGKEMELWMKAMLDAAL 119 (128)
T ss_dssp GSEEEECCGGGCCSSCSEEEEECSSSCC-EEEECSSHHHHHHHHHHHHHHHS
T ss_pred ceEEEEcCCcccCCCCeEEEEEcCCCCE-EEEEcCCHHHHHHHHHHHHHHHh
Confidence 455555543 33555555554443333 34777777777799999988875
No 16
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=28.05 E-value=1.1e+02 Score=22.56 Aligned_cols=37 Identities=5% Similarity=0.094 Sum_probs=28.4
Q ss_pred eEEEEEEcCCCcceEEEccCCCChhhHHHHHHHHHHhcCC
Q 023646 84 RVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123 (279)
Q Consensus 84 RVy~LkF~ss~~~~fFWmQe~~~~~D~~~~~~in~~l~~~ 123 (279)
.||.|++.+ ++ -|.+|-.+.+.-.+|+..|+..+...
T Consensus 67 ~~F~l~~~~-~~--~y~f~A~s~ee~~~Wi~ai~~~~~~~ 103 (112)
T 3cxb_B 67 HAFQVILSD-RP--CLELSAESEAEMAEWMQHLCQAVSKG 103 (112)
T ss_dssp TEEEEEETT-SC--CEEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred eEEEEEcCC-CC--EEEEEcCCHHHHHHHHHHHHHHhhcc
Confidence 488887742 33 35589999888889999999999864
No 17
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=27.79 E-value=1.8e+02 Score=21.32 Aligned_cols=39 Identities=15% Similarity=0.278 Sum_probs=26.0
Q ss_pred EEEEEEcCCCcceEEEccCCCChhhHHHHHHHHHHhcCCc
Q 023646 85 VYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPL 124 (279)
Q Consensus 85 Vy~LkF~ss~~~~fFWmQe~~~~~D~~~~~~in~~l~~~~ 124 (279)
-|+++....+.+ -|.|+-.+.+.=.+|+..|+.+++.+.
T Consensus 89 ~~~F~I~~~~~r-~~~l~a~s~~e~~~Wi~al~~~~~~~~ 127 (129)
T 1x1g_A 89 GNLFKVITKDDT-HYYIQASSKAERAEWIEAIKKLTSGPS 127 (129)
T ss_dssp SSCEEECCTTCC-CEEECCSSHHHHHHHHHHHHHHSSSSC
T ss_pred CceEEEEcCCCC-EEEEEcCCHHHHHHHHHHHHHHHhccc
Confidence 344444333433 344777777777799999999998653
No 18
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=26.96 E-value=2.1e+02 Score=21.69 Aligned_cols=48 Identities=19% Similarity=0.171 Sum_probs=30.5
Q ss_pred ceEEEEeccCCCe--EEEEEEcCCCcceEEEccCCCChhhHHHHHHHHHHhcC
Q 023646 72 EAVFEKVNQASGR--VYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINR 122 (279)
Q Consensus 72 d~~f~~V~~~tGR--Vy~LkF~ss~~~~fFWmQe~~~~~D~~~~~~in~~l~~ 122 (279)
.+........+.| ||.|+ ..+.+. |-||-.+.+.-.+|+..|+..|..
T Consensus 76 ~~~v~~~~~~~kr~~~F~l~--t~~~~~-yl~qA~s~~e~~~Wi~aI~~~i~~ 125 (129)
T 2p0d_A 76 GAALAHGRHLSSRRNVLHIR--TIPGHE-FLLQSDHETELRAWHRALRTVIER 125 (129)
T ss_dssp TCEEEECTTSCSSSSEEEEE--CTTSCE-EEEECSCHHHHHHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCCCcEEEEE--cCCCCE-EEEECCCHHHHHHHHHHHHHHHHh
Confidence 3444443333445 66655 333333 338999888888999999999864
No 19
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=26.71 E-value=1.7e+02 Score=20.79 Aligned_cols=53 Identities=4% Similarity=-0.054 Sum_probs=31.4
Q ss_pred CceEEEEecc--CCCe--EEEEEEcCC----CcceEEEccCCCChhhHHHHHHHHHHhcCC
Q 023646 71 HEAVFEKVNQ--ASGR--VYILKFNTD----DRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123 (279)
Q Consensus 71 gd~~f~~V~~--~tGR--Vy~LkF~ss----~~~~fFWmQe~~~~~D~~~~~~in~~l~~~ 123 (279)
..++...+.. ..++ +|.|...+. ....-|.|+-.+.+.=.+|+..|+.++...
T Consensus 54 ~~~~v~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~~~ 114 (118)
T 1v89_A 54 PGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSG 114 (118)
T ss_dssp TTEEEEEECCCSSCCCCCEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHHCC
T ss_pred CCCEEEEcCcCcccCCcceEEEECCccccccCCCcEEEEECCCHHHHHHHHHHHHHHHccC
Confidence 3445555543 3334 555555321 122334478777777779999999999754
No 20
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=25.96 E-value=71 Score=19.24 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=20.6
Q ss_pred HHHHhcChHHHHHHHHHHHHhhc
Q 023646 239 LLELLQSPPFRQQVDSFTYVRNW 261 (279)
Q Consensus 239 L~~~l~SPQFqQal~~fs~AL~s 261 (279)
|-.+|.||-|+--|....+||.+
T Consensus 6 ipkiissplfktllsavgsalss 28 (33)
T 1xc0_A 6 IPKIISSPLFKTLLSAVGSALSS 28 (33)
T ss_dssp HHHHTTTTTHHHHHHHHHHHTTT
T ss_pred hhHHHccHHHHHHHHHHHHHhhc
Confidence 45789999999999999999987
No 21
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=25.08 E-value=3.1e+02 Score=23.04 Aligned_cols=73 Identities=11% Similarity=0.370 Sum_probs=41.6
Q ss_pred EecCCceeec--CCCcEEEEEeCCC--C-ceEEEEeeCCCCCcccceeeeCCceEEEEeccCCCeEEEEE-EcC----CC
Q 023646 25 TFDGKKVVPD--SRKGLVRIARGEH--G-LIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILK-FNT----DD 94 (279)
Q Consensus 25 ~~~g~~V~pd--~rkG~l~l~~~~d--~-l~hf~W~~R~~~~~edd~ii~Pgd~~f~~V~~~tGRVy~Lk-F~s----s~ 94 (279)
.+++++|.=. .+-..|.|.-.++ - |++ .|.+...+.....||+.|- +.|++...+.+..+. +.. .+
T Consensus 3 ~l~~TRvIy~~~~k~~sl~l~N~~~~~p~LvQ-sWv~~~~~~~~~pfivtPP---l~rl~p~~~q~lRI~~~~~~~lP~D 78 (206)
T 1l4i_A 3 ALGATRVIYPEGQKQVQLAVTNNDDKSSYLIQ-SWIENAEGKKDARFVITPP---LFSMQGKKENTLRIIDATNGQMPED 78 (206)
T ss_dssp EESCSEEEEETTCSEEEEEEEECCTTCEEEEE-EEEEETTSCBCSSEEEESS---EEEEESSEEEEEEEEECCTTCSCSS
T ss_pred EeCceEEEEeCCCcEEEEEEEeCCCCccEEEE-EEEecCCCCccCCEEEcCC---eEEECCCCceEEEEEecCCCCCCCC
Confidence 4667655333 3334555544433 2 444 4887654445678999998 778877334444444 222 25
Q ss_pred cceEEEc
Q 023646 95 RKFFLWM 101 (279)
Q Consensus 95 ~~~fFWm 101 (279)
+-..||+
T Consensus 79 rEslf~l 85 (206)
T 1l4i_A 79 RESLFWV 85 (206)
T ss_dssp SCEEEEE
T ss_pred ceEEEEE
Confidence 6789996
No 22
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=24.73 E-value=1.1e+02 Score=21.97 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=23.4
Q ss_pred EEEEEEcCCCcceEEEccCCCChhhHHHHHHHHHHhcC
Q 023646 85 VYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINR 122 (279)
Q Consensus 85 Vy~LkF~ss~~~~fFWmQe~~~~~D~~~~~~in~~l~~ 122 (279)
+|.|.. .+.+. |.++-.+.+.=.+|+..|+.++..
T Consensus 68 ~F~i~~--~~~r~-~~l~a~s~~e~~~Wi~ai~~~~~~ 102 (113)
T 1pls_A 68 VFKITT--TKQQD-HFFQAAFLEERDAWVRDINKAIKC 102 (113)
T ss_dssp EEEEEE--TTTEE-EEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEEc--CCCCE-EEEECCCHHHHHHHHHHHHHHHhc
Confidence 555544 23232 337777776667999999999874
No 23
>2aj7_A Hypothetical protein BH3618; BH3618-like fold, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.67A {Bacillus halodurans} SCOP: b.158.1.1
Probab=24.17 E-value=67 Score=26.68 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=22.4
Q ss_pred ccceeeeCCceEEEEecc-CCCeEEEEEEcCCCcceEEEccCCCC
Q 023646 63 EDDQIVFPHEAVFEKVNQ-ASGRVYILKFNTDDRKFFLWMQEPKA 106 (279)
Q Consensus 63 edd~ii~Pgd~~f~~V~~-~tGRVy~LkF~ss~~~~fFWmQe~~~ 106 (279)
|+++|.||.- +.- .+=|=|+|-.. ....-|||||+-+.
T Consensus 28 e~~ii~F~~G-----IpGFE~~k~F~L~~~-~~~~pf~~LQS~dd 66 (163)
T 2aj7_A 28 EDRLIAFDQG-----IPAFEDEKEFVLLPF-AAGTPYYTLQSTKT 66 (163)
T ss_dssp GGGEEECTTC-----BTTBTTCCEEEEEES-STTSCEEEEEESSC
T ss_pred ccCEEEccCC-----CcCCccceEEEEEec-CCCCcEEEEEecCC
Confidence 5566666642 222 33355655542 34569999998765
No 24
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=23.94 E-value=2.1e+02 Score=22.21 Aligned_cols=43 Identities=7% Similarity=0.201 Sum_probs=25.8
Q ss_pred CcEEEEEeCCCCceEEEEeeCCCCCcccceeeeCCceEEEEecc-CCCeEE
Q 023646 37 KGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQ-ASGRVY 86 (279)
Q Consensus 37 kG~l~l~~~~d~l~hf~W~~R~~~~~edd~ii~Pgd~~f~~V~~-~tGRVy 86 (279)
-|.|+|..+ |+.|.+...+ +-.+.+.-.+.+=.++.+ ..-+|-
T Consensus 21 dGtL~l~~d-----~i~W~p~~~~--~~~vs~~~~~I~~qq~SP~~k~KVq 64 (108)
T 1pfj_A 21 DGALYLMAE-----RIAWAPEGKD--RFTISHMYADIKCQKISPEGKAKIQ 64 (108)
T ss_dssp BCEEEEETT-----EEEEECSSSS--SCSEEEETTTCCCEEECCSSSSSCE
T ss_pred CceEEEEcc-----eEEEccCCCC--CceEEEehhhhhcceeCCCCCccEE
Confidence 399999763 9999996553 334443345555556654 333443
No 25
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=22.45 E-value=2.3e+02 Score=25.92 Aligned_cols=51 Identities=16% Similarity=0.198 Sum_probs=33.6
Q ss_pred ceEEEEeccCCCeEEEEEEcCCCcceEEEccCCCChhhHHHHHHHHHHhcCC
Q 023646 72 EAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123 (279)
Q Consensus 72 d~~f~~V~~~tGRVy~LkF~ss~~~~fFWmQe~~~~~D~~~~~~in~~l~~~ 123 (279)
.+..+.++. .+|=|+++..+.+++.-|-||-.+.+.=.+|+..|+.++...
T Consensus 350 ~~~v~~~~~-~~r~~cF~i~~~~~~~~~~l~A~s~~e~~~Wi~ai~~a~~~~ 400 (407)
T 4h8s_A 350 NCSVMAVDC-EDRRYCFQITTPNGKSGIILQAESRKENEEWICAINNISRQI 400 (407)
T ss_dssp CCEEEEECC-TTCSSEEEEECTTSSCCEEEECSSSHHHHHHHHHHHHHHSCC
T ss_pred ceEEEECCC-CCCCceEEEEecCCCceEEEEcCCHHHHHHHHHHHHHHHHHh
Confidence 345444444 345455554444444446789888888889999999999753
No 26
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=22.30 E-value=2.3e+02 Score=20.72 Aligned_cols=37 Identities=8% Similarity=0.196 Sum_probs=24.3
Q ss_pred eEEEEEEcCCCcceEEEccCCCChhhHHHHHHHHHHhcCC
Q 023646 84 RVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123 (279)
Q Consensus 84 RVy~LkF~ss~~~~fFWmQe~~~~~D~~~~~~in~~l~~~ 123 (279)
.+|.|.. .+++. |.|+-.+.+.=.+|+..|+.+++..
T Consensus 86 ~~F~i~~--~~~~~-~~l~a~s~~e~~~Wi~al~~~~~~~ 122 (129)
T 1x05_A 86 NLFEIIT--ADEVH-YFLQAATPKERTEWIKAIQMASRTG 122 (129)
T ss_dssp SEEEEEC--TTCCC-CEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred eEEEEEc--CCCCE-EEEECCCHHHHHHHHHHHHHHHHcc
Confidence 4555554 34332 3457777766679999999999754
No 27
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=22.02 E-value=1.1e+02 Score=22.52 Aligned_cols=36 Identities=28% Similarity=0.218 Sum_probs=24.7
Q ss_pred EEEEEEcCCCcceEEEccCCCChhhHHHHHHHHHHhcCC
Q 023646 85 VYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123 (279)
Q Consensus 85 Vy~LkF~ss~~~~fFWmQe~~~~~D~~~~~~in~~l~~~ 123 (279)
||.|+. .+.+. |-+|-.+.+.=.+|+..|+.+++..
T Consensus 84 ~F~i~~--~~~~~-~~f~A~s~~e~~~Wi~ai~~~~~~~ 119 (123)
T 1wjm_A 84 VFKLGL--QDGKE-YLFQAKDEAEMSSWLRVVNAAIASG 119 (123)
T ss_dssp EEEEEC--SSSCE-EEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEE--cCCcE-EEEECCCHHHHHHHHHHHHHHHhcc
Confidence 555554 33233 3378888877789999999999743
No 28
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.26 E-value=2.3e+02 Score=20.20 Aligned_cols=51 Identities=10% Similarity=0.051 Sum_probs=29.9
Q ss_pred ceEEEEecc--CCCeEEEEEEcCCCcceEEEccCCCChhhHHHHHHHHHHhcCC
Q 023646 72 EAVFEKVNQ--ASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123 (279)
Q Consensus 72 d~~f~~V~~--~tGRVy~LkF~ss~~~~fFWmQe~~~~~D~~~~~~in~~l~~~ 123 (279)
+++...|.. ..+|-|++.....+.+ -|.|+-.+.+.=.+|+..|+.++...
T Consensus 59 ~~~v~~~~~~~~~~~~~~F~i~~~~~r-~~~l~a~s~~e~~~Wi~al~~~~~~~ 111 (117)
T 2d9y_A 59 SFRVAAVQPSDNISRKHTFKAEHAGVR-TYFFSAESPEEQEAWIQAMGEAARVQ 111 (117)
T ss_dssp SCEEEECCTTTTCCCSSEEEEECSSSC-EEEEECSSHHHHHHHHHHHHHTTCCT
T ss_pred CeEEEEcCccccCCCccEEEEEcCCCc-EEEEEcCCHHHHHHHHHHHHHHHhhc
Confidence 344455532 3345344443222322 35577777777779999999998743
No 29
>2kzk_A Uncharacterized protein YOL083W; selective autophagy, ATG34, alpha-mannosidase, ATG19, protei transport; NMR {Saccharomyces cerevisiae}
Probab=20.69 E-value=74 Score=24.23 Aligned_cols=37 Identities=30% Similarity=0.560 Sum_probs=26.9
Q ss_pred CCCceEEEEeeCCCCCcccceeeeCCceEEEEeccCCCeEEEEEE
Q 023646 46 EHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKF 90 (279)
Q Consensus 46 ~d~l~hf~W~~R~~~~~edd~ii~Pgd~~f~~V~~~tGRVy~LkF 90 (279)
+|+-+||+-.+.+. +|+||.|+|+.-.+ -..||.+|.
T Consensus 16 ~DNSL~F~L~N~TN-------~ii~GNC~~~Fs~~-~~~~~~I~M 52 (107)
T 2kzk_A 16 EDNSLHFILYNKTN-------IIIPGNCTFEFSSQ-ISEVFSIKM 52 (107)
T ss_dssp BTTBCCEEEECCSS-------SCCCSSCEEEBCCS-SSCCBCCBC
T ss_pred CCCeEEEEEecCCc-------eEecCcceEEEecC-CCcEEEEec
Confidence 67778888888765 67899999988776 123555554
Done!