Query 023648
Match_columns 279
No_of_seqs 371 out of 2540
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 05:36:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023648.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023648hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0107 Alternative splicing f 99.9 3.5E-20 7.6E-25 149.8 15.5 79 39-121 10-88 (195)
2 KOG0113 U1 small nuclear ribon 99.8 5.1E-20 1.1E-24 159.9 17.6 92 29-120 91-183 (335)
3 PLN03134 glycine-rich RNA-bind 99.8 1.2E-19 2.6E-24 147.0 15.3 85 36-120 31-116 (144)
4 KOG4207 Predicted splicing fac 99.8 3.4E-18 7.4E-23 141.6 12.7 84 35-118 9-93 (256)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.5E-16 3.3E-21 146.6 12.8 82 38-119 268-350 (352)
6 PF00076 RRM_1: RNA recognitio 99.7 1.9E-16 4.2E-21 111.4 9.3 70 42-111 1-70 (70)
7 KOG0121 Nuclear cap-binding pr 99.7 7.4E-17 1.6E-21 124.3 7.4 87 34-120 31-118 (153)
8 TIGR01659 sex-lethal sex-letha 99.7 3.7E-16 7.9E-21 143.6 10.6 84 35-118 103-187 (346)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 5E-16 1.1E-20 143.2 11.4 82 38-119 2-84 (352)
10 KOG0105 Alternative splicing f 99.6 1.9E-15 4.2E-20 123.4 10.3 81 37-119 4-84 (241)
11 TIGR01659 sex-lethal sex-letha 99.6 1E-14 2.3E-19 134.0 13.8 83 38-120 192-277 (346)
12 PF14259 RRM_6: RNA recognitio 99.6 8E-15 1.7E-19 103.7 9.8 70 42-111 1-70 (70)
13 KOG0125 Ataxin 2-binding prote 99.6 3.1E-15 6.8E-20 131.7 8.6 84 34-118 91-174 (376)
14 KOG0122 Translation initiation 99.6 6.8E-15 1.5E-19 125.0 9.4 82 37-118 187-269 (270)
15 KOG0130 RNA-binding protein RB 99.6 5.3E-15 1.2E-19 115.0 7.5 84 37-120 70-154 (170)
16 PLN03120 nucleic acid binding 99.6 1.3E-14 2.9E-19 126.2 10.7 76 39-117 4-79 (260)
17 KOG0149 Predicted RNA-binding 99.5 1.3E-14 2.9E-19 122.7 7.1 78 39-117 12-90 (247)
18 smart00362 RRM_2 RNA recogniti 99.5 6.3E-14 1.4E-18 97.7 9.5 72 41-113 1-72 (72)
19 TIGR01642 U2AF_lg U2 snRNP aux 99.5 6.3E-14 1.4E-18 135.4 11.8 82 37-118 293-375 (509)
20 TIGR01645 half-pint poly-U bin 99.5 5E-14 1.1E-18 136.7 11.0 83 38-120 203-286 (612)
21 KOG0126 Predicted RNA-binding 99.5 2E-15 4.3E-20 123.0 1.0 82 37-118 33-115 (219)
22 TIGR01645 half-pint poly-U bin 99.5 4.6E-14 1E-18 137.0 10.4 80 36-115 104-184 (612)
23 KOG0148 Apoptosis-promoting RN 99.5 3.1E-14 6.7E-19 122.6 8.0 90 34-123 57-147 (321)
24 PLN03121 nucleic acid binding 99.5 1E-13 2.2E-18 119.1 10.6 76 38-116 4-79 (243)
25 TIGR01622 SF-CC1 splicing fact 99.5 8.3E-14 1.8E-18 132.9 11.3 79 39-117 186-265 (457)
26 PLN03213 repressor of silencin 99.5 6.6E-14 1.4E-18 129.1 9.9 78 37-117 8-87 (759)
27 TIGR01648 hnRNP-R-Q heterogene 99.5 2.9E-13 6.4E-18 131.1 14.3 77 37-120 231-309 (578)
28 TIGR01628 PABP-1234 polyadenyl 99.5 1E-13 2.2E-18 135.8 10.9 77 41-117 2-79 (562)
29 KOG0148 Apoptosis-promoting RN 99.5 1.7E-13 3.6E-18 118.1 9.8 87 29-120 154-240 (321)
30 TIGR01622 SF-CC1 splicing fact 99.5 2E-13 4.3E-18 130.3 11.0 81 36-117 86-167 (457)
31 cd00590 RRM RRM (RNA recogniti 99.5 4.6E-13 1E-17 93.8 10.1 74 41-114 1-74 (74)
32 KOG0114 Predicted RNA-binding 99.5 2E-13 4.3E-18 101.7 8.2 80 37-118 16-95 (124)
33 TIGR01628 PABP-1234 polyadenyl 99.5 2.1E-13 4.5E-18 133.5 11.0 83 36-118 282-364 (562)
34 KOG0131 Splicing factor 3b, su 99.5 6.4E-14 1.4E-18 114.3 5.9 82 35-116 5-87 (203)
35 TIGR01648 hnRNP-R-Q heterogene 99.5 2.3E-13 5E-18 131.8 10.0 76 38-113 57-133 (578)
36 KOG0111 Cyclophilin-type pepti 99.5 7.2E-14 1.6E-18 117.1 5.4 85 38-122 9-94 (298)
37 smart00360 RRM RNA recognition 99.4 5.6E-13 1.2E-17 92.4 8.5 70 44-113 1-71 (71)
38 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 5.5E-13 1.2E-17 128.2 10.9 78 37-118 273-351 (481)
39 COG0724 RNA-binding proteins ( 99.4 6.8E-13 1.5E-17 115.6 10.1 79 39-117 115-194 (306)
40 KOG0415 Predicted peptidyl pro 99.4 3.9E-13 8.4E-18 119.6 6.5 84 35-118 235-319 (479)
41 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 1.3E-12 2.9E-17 125.6 10.2 76 38-118 1-78 (481)
42 KOG0117 Heterogeneous nuclear 99.4 1.5E-12 3.2E-17 119.0 8.9 79 37-115 81-161 (506)
43 KOG0127 Nucleolar protein fibr 99.4 1.3E-12 2.9E-17 121.9 8.7 83 38-120 116-198 (678)
44 KOG0109 RNA-binding protein LA 99.4 7.4E-13 1.6E-17 115.2 6.5 72 40-118 3-74 (346)
45 KOG0145 RNA-binding protein EL 99.4 3.4E-12 7.3E-17 109.6 10.2 81 38-118 277-358 (360)
46 PF13893 RRM_5: RNA recognitio 99.4 3.6E-12 7.9E-17 86.3 8.3 56 56-115 1-56 (56)
47 KOG0117 Heterogeneous nuclear 99.4 7.3E-13 1.6E-17 121.0 5.5 79 35-120 255-333 (506)
48 KOG0108 mRNA cleavage and poly 99.3 1.9E-12 4.1E-17 121.3 7.9 81 40-120 19-100 (435)
49 KOG0146 RNA-binding protein ET 99.3 1.3E-12 2.7E-17 112.6 6.0 87 34-120 280-367 (371)
50 KOG0145 RNA-binding protein EL 99.3 4E-12 8.7E-17 109.1 8.1 83 37-119 39-122 (360)
51 KOG0124 Polypyrimidine tract-b 99.3 1.5E-12 3.2E-17 116.4 4.6 75 39-113 113-188 (544)
52 KOG0127 Nucleolar protein fibr 99.3 8E-12 1.7E-16 116.7 9.4 85 34-118 287-378 (678)
53 KOG0144 RNA-binding protein CU 99.3 2.5E-12 5.5E-17 117.1 5.6 86 36-121 121-209 (510)
54 KOG0147 Transcriptional coacti 99.3 6E-12 1.3E-16 117.8 7.1 79 41-119 280-359 (549)
55 KOG0144 RNA-binding protein CU 99.3 5.8E-12 1.3E-16 114.7 6.8 87 34-120 29-119 (510)
56 smart00361 RRM_1 RNA recogniti 99.2 4E-11 8.7E-16 85.1 8.2 60 53-112 2-69 (70)
57 KOG0116 RasGAP SH3 binding pro 99.2 1E-10 2.3E-15 109.0 11.9 84 36-120 285-369 (419)
58 KOG0109 RNA-binding protein LA 99.2 1.7E-11 3.7E-16 106.8 5.8 79 36-121 75-153 (346)
59 KOG4212 RNA-binding protein hn 99.2 4.3E-11 9.4E-16 109.3 8.2 79 39-117 44-123 (608)
60 TIGR01642 U2AF_lg U2 snRNP aux 99.2 6.7E-11 1.4E-15 114.4 8.9 74 36-115 172-257 (509)
61 KOG4661 Hsp27-ERE-TATA-binding 99.2 7.7E-11 1.7E-15 110.7 8.6 84 36-119 402-486 (940)
62 KOG0132 RNA polymerase II C-te 99.1 8.8E-11 1.9E-15 113.7 7.5 81 37-122 419-499 (894)
63 KOG4206 Spliceosomal protein s 99.1 1.7E-10 3.6E-15 97.6 7.7 84 35-120 5-92 (221)
64 KOG0123 Polyadenylate-binding 99.1 3.4E-10 7.3E-15 105.0 8.5 80 39-120 76-155 (369)
65 KOG0131 Splicing factor 3b, su 99.1 2.5E-10 5.4E-15 93.4 6.2 88 34-121 91-180 (203)
66 KOG0110 RNA-binding protein (R 99.0 6.5E-10 1.4E-14 107.0 8.2 78 39-116 515-596 (725)
67 KOG0106 Alternative splicing f 99.0 3.2E-10 7E-15 96.5 5.3 74 41-121 3-76 (216)
68 KOG4208 Nucleolar RNA-binding 99.0 1E-09 2.2E-14 91.6 8.0 85 34-118 44-130 (214)
69 KOG0153 Predicted RNA-binding 99.0 8.3E-10 1.8E-14 98.4 7.7 74 39-117 228-302 (377)
70 KOG0124 Polypyrimidine tract-b 99.0 1.1E-09 2.5E-14 98.1 8.3 79 39-117 210-289 (544)
71 KOG0123 Polyadenylate-binding 99.0 1.4E-09 3.1E-14 100.8 8.2 75 40-119 2-76 (369)
72 KOG0533 RRM motif-containing p 99.0 1.9E-09 4.2E-14 93.7 7.9 83 37-119 81-163 (243)
73 KOG4205 RNA-binding protein mu 98.9 2.2E-09 4.8E-14 96.7 5.5 82 38-120 5-87 (311)
74 KOG2202 U2 snRNP splicing fact 98.9 6.4E-10 1.4E-14 95.7 1.7 113 2-116 26-146 (260)
75 KOG4454 RNA binding protein (R 98.9 8.8E-10 1.9E-14 92.7 2.3 79 38-117 8-86 (267)
76 KOG0110 RNA-binding protein (R 98.9 2E-09 4.3E-14 103.7 4.4 80 38-117 612-692 (725)
77 KOG0146 RNA-binding protein ET 98.8 4.7E-09 1E-13 90.8 5.1 83 38-120 18-103 (371)
78 KOG1457 RNA binding protein (c 98.8 3.2E-08 7E-13 83.6 9.5 84 38-121 33-121 (284)
79 KOG1548 Transcription elongati 98.8 1.8E-08 4E-13 89.9 8.3 84 37-120 132-223 (382)
80 KOG4209 Splicing factor RNPS1, 98.8 1.4E-08 3.1E-13 88.2 7.5 83 35-118 97-180 (231)
81 KOG4205 RNA-binding protein mu 98.8 9.1E-09 2E-13 92.8 6.1 83 38-121 96-179 (311)
82 KOG0151 Predicted splicing reg 98.8 1.3E-08 2.8E-13 98.0 7.2 81 37-117 172-256 (877)
83 KOG4212 RNA-binding protein hn 98.8 1.5E-08 3.3E-13 92.8 6.5 76 36-115 533-608 (608)
84 KOG4660 Protein Mei2, essentia 98.7 8.3E-09 1.8E-13 97.2 3.1 75 33-111 69-143 (549)
85 KOG1190 Polypyrimidine tract-b 98.5 4.9E-07 1.1E-11 82.5 9.7 76 39-118 297-373 (492)
86 PF04059 RRM_2: RNA recognitio 98.5 1.2E-06 2.7E-11 65.8 8.7 80 40-119 2-88 (97)
87 KOG0106 Alternative splicing f 98.5 3.3E-07 7.1E-12 78.3 6.1 71 35-112 95-165 (216)
88 KOG0120 Splicing factor U2AF, 98.4 2.1E-07 4.6E-12 88.3 5.0 86 35-120 285-371 (500)
89 KOG0226 RNA-binding proteins [ 98.4 2.5E-07 5.5E-12 79.6 4.2 78 38-115 189-267 (290)
90 KOG1457 RNA binding protein (c 98.3 5.3E-07 1.1E-11 76.4 3.8 67 37-106 208-274 (284)
91 KOG1995 Conserved Zn-finger pr 98.3 6.3E-07 1.4E-11 80.7 3.9 84 36-119 63-155 (351)
92 PF11608 Limkain-b1: Limkain b 98.2 3.8E-06 8.3E-11 60.7 6.4 69 40-117 3-76 (90)
93 KOG4211 Splicing factor hnRNP- 98.2 5.7E-06 1.2E-10 77.3 8.1 77 37-116 8-84 (510)
94 KOG4206 Spliceosomal protein s 98.2 6.4E-06 1.4E-10 70.0 7.5 78 35-116 142-220 (221)
95 KOG4210 Nuclear localization s 98.2 2.5E-06 5.3E-11 76.7 5.1 86 35-121 180-267 (285)
96 KOG0147 Transcriptional coacti 98.1 5.7E-06 1.2E-10 78.2 6.6 60 54-117 468-527 (549)
97 KOG0120 Splicing factor U2AF, 98.0 1E-05 2.2E-10 77.0 7.1 62 56-117 426-491 (500)
98 KOG4211 Splicing factor hnRNP- 98.0 1.1E-05 2.4E-10 75.5 6.9 77 38-115 102-179 (510)
99 PF08777 RRM_3: RNA binding mo 98.0 7.1E-06 1.5E-10 62.8 4.8 71 39-114 1-76 (105)
100 KOG2314 Translation initiation 98.0 1.9E-05 4.2E-10 74.9 8.1 88 26-113 45-139 (698)
101 KOG4676 Splicing factor, argin 97.9 1.3E-06 2.9E-11 79.3 -1.5 64 40-107 152-215 (479)
102 COG5175 MOT2 Transcriptional r 97.9 2.9E-05 6.2E-10 69.6 6.3 78 40-117 115-202 (480)
103 KOG0129 Predicted RNA-binding 97.7 0.00014 3E-09 68.6 7.7 68 32-99 363-432 (520)
104 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.0001 2.3E-09 49.1 5.0 52 40-97 2-53 (53)
105 KOG1548 Transcription elongati 97.7 0.00015 3.3E-09 65.3 7.5 76 38-116 264-350 (382)
106 KOG3152 TBP-binding protein, a 97.6 2.7E-05 5.8E-10 67.4 2.4 72 38-109 73-157 (278)
107 PF08952 DUF1866: Domain of un 97.6 0.0003 6.5E-09 56.5 8.1 75 36-118 24-107 (146)
108 KOG4307 RNA binding protein RB 97.6 0.00024 5.3E-09 69.1 8.4 77 38-114 865-943 (944)
109 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00042 9.1E-09 52.4 7.7 75 39-115 6-89 (100)
110 KOG0129 Predicted RNA-binding 97.6 0.0003 6.4E-09 66.5 8.3 61 39-100 259-326 (520)
111 KOG1456 Heterogeneous nuclear 97.6 0.00034 7.4E-09 63.6 8.3 81 34-118 282-363 (494)
112 KOG1365 RNA-binding protein Fu 97.6 8.7E-05 1.9E-09 67.6 4.5 77 39-115 280-359 (508)
113 KOG1855 Predicted RNA-binding 97.6 8.7E-05 1.9E-09 68.5 4.6 67 36-102 228-308 (484)
114 KOG1996 mRNA splicing factor [ 97.5 0.00038 8.2E-09 61.5 7.0 63 54-116 301-365 (378)
115 KOG0112 Large RNA-binding prot 97.5 0.00019 4.2E-09 71.6 5.8 78 35-117 451-530 (975)
116 KOG1456 Heterogeneous nuclear 97.4 0.0011 2.4E-08 60.4 9.3 79 37-119 118-200 (494)
117 KOG4676 Splicing factor, argin 97.4 0.0003 6.5E-09 64.3 5.7 74 39-113 7-84 (479)
118 KOG2416 Acinus (induces apopto 97.4 0.0001 2.3E-09 70.4 2.7 76 36-116 441-520 (718)
119 KOG1190 Polypyrimidine tract-b 97.4 0.00048 1E-08 63.4 6.7 79 36-117 411-490 (492)
120 KOG0105 Alternative splicing f 97.3 0.0021 4.6E-08 53.3 9.4 62 39-106 115-176 (241)
121 KOG4849 mRNA cleavage factor I 97.2 0.00022 4.7E-09 64.3 2.9 75 39-113 80-157 (498)
122 KOG0128 RNA-binding protein SA 97.1 0.00023 5E-09 70.7 1.6 79 39-117 736-814 (881)
123 KOG0112 Large RNA-binding prot 96.8 0.00036 7.7E-09 69.7 0.1 78 36-113 369-446 (975)
124 KOG4307 RNA binding protein RB 96.7 0.0016 3.6E-08 63.6 4.2 83 34-116 429-512 (944)
125 PF08675 RNA_bind: RNA binding 96.5 0.016 3.6E-07 42.0 7.1 55 39-101 9-63 (87)
126 KOG0115 RNA-binding protein p5 96.5 0.0031 6.7E-08 54.8 3.8 74 40-113 32-109 (275)
127 KOG2193 IGF-II mRNA-binding pr 96.5 0.0021 4.6E-08 59.5 3.0 73 40-119 2-77 (584)
128 KOG0128 RNA-binding protein SA 96.4 0.00035 7.5E-09 69.5 -2.6 74 39-112 667-741 (881)
129 KOG4285 Mitotic phosphoprotein 96.4 0.013 2.9E-07 52.1 7.5 64 40-110 198-261 (350)
130 PF10309 DUF2414: Protein of u 96.4 0.016 3.5E-07 39.8 6.3 55 39-100 5-62 (62)
131 KOG2068 MOT2 transcription fac 96.4 0.001 2.2E-08 60.0 0.4 78 40-117 78-162 (327)
132 PF15023 DUF4523: Protein of u 96.2 0.021 4.5E-07 45.6 7.0 72 37-115 84-159 (166)
133 KOG2253 U1 snRNP complex, subu 96.2 0.0033 7.2E-08 61.2 3.0 74 33-114 34-107 (668)
134 KOG1365 RNA-binding protein Fu 96.2 0.015 3.4E-07 53.3 7.0 71 41-112 163-237 (508)
135 PF03880 DbpA: DbpA RNA bindin 96.1 0.024 5.2E-07 40.3 6.4 67 41-115 2-74 (74)
136 PF03467 Smg4_UPF3: Smg-4/UPF3 95.7 0.026 5.6E-07 47.2 5.7 80 38-117 6-97 (176)
137 KOG2135 Proteins containing th 95.2 0.011 2.5E-07 55.5 2.3 71 41-117 374-445 (526)
138 PF04847 Calcipressin: Calcipr 95.2 0.074 1.6E-06 44.8 6.8 62 52-118 8-71 (184)
139 PRK11634 ATP-dependent RNA hel 94.7 0.6 1.3E-05 46.8 13.0 69 41-117 488-562 (629)
140 PF07576 BRAP2: BRCA1-associat 94.4 0.38 8.2E-06 37.0 8.4 67 40-107 14-81 (110)
141 KOG4660 Protein Mei2, essentia 94.4 0.073 1.6E-06 51.1 5.4 84 37-120 386-475 (549)
142 KOG4574 RNA-binding protein (c 94.0 0.043 9.2E-07 55.1 3.0 75 41-120 300-376 (1007)
143 KOG4210 Nuclear localization s 92.7 0.049 1.1E-06 49.1 1.1 82 38-119 87-169 (285)
144 PF11767 SET_assoc: Histone ly 92.3 0.89 1.9E-05 31.6 6.8 56 50-113 11-66 (66)
145 KOG2591 c-Mpl binding protein, 92.2 0.23 4.9E-06 47.9 5.0 67 39-111 175-245 (684)
146 KOG0804 Cytoplasmic Zn-finger 92.1 0.41 8.8E-06 45.1 6.3 68 39-107 74-142 (493)
147 KOG2318 Uncharacterized conser 90.4 0.96 2.1E-05 44.0 7.1 79 35-113 170-301 (650)
148 KOG4019 Calcineurin-mediated s 85.6 0.53 1.1E-05 39.2 1.9 77 39-120 10-92 (193)
149 KOG4410 5-formyltetrahydrofola 80.0 4 8.7E-05 36.5 5.3 46 40-90 331-377 (396)
150 KOG4483 Uncharacterized conser 80.0 3.7 7.9E-05 38.4 5.2 55 38-98 390-445 (528)
151 KOG2891 Surface glycoprotein [ 79.5 0.71 1.5E-05 41.0 0.5 70 36-105 146-247 (445)
152 KOG2193 IGF-II mRNA-binding pr 78.4 0.12 2.5E-06 48.3 -4.9 77 39-117 80-156 (584)
153 PF10567 Nab6_mRNP_bdg: RNA-re 77.4 4.9 0.00011 36.1 5.1 78 39-116 15-106 (309)
154 KOG4454 RNA binding protein (R 76.7 0.69 1.5E-05 39.7 -0.4 75 38-112 79-157 (267)
155 PF03468 XS: XS domain; Inter 69.8 5.4 0.00012 30.9 3.1 45 52-98 30-75 (116)
156 COG0724 RNA-binding proteins ( 67.2 6.6 0.00014 33.3 3.6 65 34-98 220-285 (306)
157 smart00596 PRE_C2HC PRE_C2HC d 67.0 13 0.00028 26.0 4.2 60 54-116 2-63 (69)
158 COG5638 Uncharacterized conser 64.1 18 0.0004 34.0 5.8 72 36-107 143-285 (622)
159 PF07530 PRE_C2HC: Associated 63.5 18 0.00039 25.2 4.5 61 54-117 2-64 (68)
160 KOG2295 C2H2 Zn-finger protein 63.2 1.2 2.5E-05 43.2 -2.0 72 36-107 228-300 (648)
161 PF15513 DUF4651: Domain of un 61.1 21 0.00046 24.4 4.3 20 54-73 9-28 (62)
162 KOG2888 Putative RNA binding p 54.5 7 0.00015 35.7 1.4 10 79-88 159-168 (453)
163 KOG1295 Nonsense-mediated deca 52.2 18 0.0004 33.6 3.8 68 39-106 7-78 (376)
164 KOG4213 RNA-binding protein La 52.1 19 0.00041 30.1 3.5 36 64-99 132-169 (205)
165 PF03439 Spt5-NGN: Early trans 51.7 34 0.00073 24.7 4.5 37 65-105 33-69 (84)
166 KOG4246 Predicted DNA-binding 51.0 9.7 0.00021 38.9 1.9 11 38-48 144-154 (1194)
167 KOG2888 Putative RNA binding p 50.3 13 0.00029 33.9 2.5 23 41-63 154-181 (453)
168 KOG4365 Uncharacterized conser 45.4 3.5 7.5E-05 39.0 -2.0 76 40-116 4-80 (572)
169 KOG4207 Predicted splicing fac 44.1 1.8E+02 0.0039 25.1 8.2 23 83-105 61-85 (256)
170 PF14893 PNMA: PNMA 43.5 21 0.00045 32.9 2.8 57 34-91 13-73 (331)
171 PRK11230 glycolate oxidase sub 42.1 79 0.0017 30.8 6.7 64 38-101 188-255 (499)
172 PRK08559 nusG transcription an 41.8 84 0.0018 25.4 5.8 34 66-103 36-69 (153)
173 KOG3702 Nuclear polyadenylated 38.9 17 0.00036 36.3 1.5 72 41-113 513-585 (681)
174 KOG0151 Predicted splicing reg 38.8 26 0.00057 35.3 2.8 9 83-91 695-703 (877)
175 PF09707 Cas_Cas2CT1978: CRISP 38.1 66 0.0014 23.5 4.2 48 39-88 25-72 (86)
176 COG5193 LHP1 La protein, small 37.6 14 0.00031 34.6 0.7 59 40-98 175-244 (438)
177 CHL00123 rps6 ribosomal protei 37.5 1.4E+02 0.0031 22.1 6.1 57 41-99 10-81 (97)
178 PF00403 HMA: Heavy-metal-asso 37.1 1.2E+02 0.0026 19.8 6.2 54 41-99 1-58 (62)
179 COG5507 Uncharacterized conser 36.6 33 0.00071 25.8 2.4 39 62-100 47-86 (117)
180 COG0030 KsgA Dimethyladenosine 34.1 57 0.0012 29.0 3.9 30 39-68 95-124 (259)
181 KOG0107 Alternative splicing f 34.0 2.7E+02 0.0059 23.4 7.6 13 38-50 36-48 (195)
182 KOG4008 rRNA processing protei 33.8 25 0.00054 30.7 1.5 35 34-68 35-69 (261)
183 PF00398 RrnaAD: Ribosomal RNA 33.2 40 0.00087 29.7 2.9 31 39-69 97-129 (262)
184 KOG0113 U1 small nuclear ribon 30.8 1.8E+02 0.0039 26.5 6.4 8 85-92 109-116 (335)
185 TIGR00387 glcD glycolate oxida 30.0 1.4E+02 0.003 28.2 6.1 63 38-100 130-197 (413)
186 PF08544 GHMP_kinases_C: GHMP 29.6 1.4E+02 0.003 20.6 4.8 43 54-100 37-79 (85)
187 KOG0156 Cytochrome P450 CYP2 s 28.9 85 0.0018 30.6 4.5 62 40-110 33-97 (489)
188 PF02714 DUF221: Domain of unk 28.1 50 0.0011 29.8 2.7 31 83-115 1-31 (325)
189 PLN02805 D-lactate dehydrogena 27.8 1.6E+02 0.0036 29.1 6.4 50 52-101 279-332 (555)
190 KOG1999 RNA polymerase II tran 26.8 1.4E+02 0.0031 31.4 5.7 29 78-106 208-236 (1024)
191 smart00738 NGN In Spt5p, this 26.6 1.4E+02 0.003 21.9 4.5 25 79-103 58-82 (106)
192 KOG2187 tRNA uracil-5-methyltr 26.4 48 0.001 32.4 2.2 40 78-117 61-100 (534)
193 PF05189 RTC_insert: RNA 3'-te 26.0 2.1E+02 0.0046 21.1 5.4 47 41-87 12-64 (103)
194 PF07292 NID: Nmi/IFP 35 domai 25.4 42 0.00091 24.7 1.3 24 38-61 51-74 (88)
195 PRK11558 putative ssRNA endonu 25.0 1.2E+02 0.0026 22.7 3.7 50 39-90 27-76 (97)
196 TIGR00755 ksgA dimethyladenosi 24.5 90 0.0019 27.2 3.6 25 41-65 96-120 (253)
197 PRK11901 hypothetical protein; 23.8 1.4E+02 0.003 27.5 4.6 61 38-102 244-306 (327)
198 COG5584 Predicted small secret 23.8 1.4E+02 0.003 22.4 3.7 32 46-77 29-60 (103)
199 KOG1232 Proteins containing th 23.1 99 0.0022 29.2 3.6 50 48-97 233-286 (511)
200 KOG0132 RNA polymerase II C-te 23.0 3.4E+02 0.0073 28.1 7.4 20 79-98 508-527 (894)
201 PF14111 DUF4283: Domain of un 23.0 33 0.00072 27.1 0.4 68 41-116 17-90 (153)
202 PF11411 DNA_ligase_IV: DNA li 22.7 59 0.0013 19.7 1.4 17 49-65 19-35 (36)
203 PF11823 DUF3343: Protein of u 21.9 91 0.002 21.6 2.5 26 82-107 3-28 (73)
204 COG0002 ArgC Acetylglutamate s 21.9 1.5E+02 0.0033 27.5 4.5 46 46-91 252-304 (349)
205 KOG0670 U4/U6-associated splic 21.6 1.6E+02 0.0034 29.3 4.7 9 259-267 246-254 (752)
206 KOG0226 RNA-binding proteins [ 21.3 25 0.00055 31.1 -0.6 73 40-112 97-172 (290)
207 TIGR00405 L26e_arch ribosomal 21.1 3E+02 0.0065 21.6 5.7 25 79-103 37-61 (145)
208 COG2608 CopZ Copper chaperone 20.4 3E+02 0.0064 18.9 5.9 45 40-89 4-48 (71)
No 1
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=3.5e-20 Score=149.81 Aligned_cols=79 Identities=33% Similarity=0.590 Sum_probs=74.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeecC
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~~ 118 (279)
.+.||||||+..+++.+|+.+|.+||+|..|+|..+ +.|||||+|++..+|+.|+..|+|..|.|..|.|++++..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 679999999999999999999999999999999886 6889999999999999999999999999999999999876
Q ss_pred CCC
Q 023648 119 GRK 121 (279)
Q Consensus 119 ~~~ 121 (279)
...
T Consensus 86 ~r~ 88 (195)
T KOG0107|consen 86 PRG 88 (195)
T ss_pred ccc
Confidence 653
No 2
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=5.1e-20 Score=159.86 Aligned_cols=92 Identities=28% Similarity=0.521 Sum_probs=83.8
Q ss_pred HhhhcCCCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECC
Q 023648 29 EERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (279)
Q Consensus 29 ~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~g 107 (279)
...+.+..+|-+||||+.|+++|+|..|+.+|++||+|+.|.||.++.| +++|||||+|+++.++..|.+..+|.+|+|
T Consensus 91 ~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idg 170 (335)
T KOG0113|consen 91 NNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG 170 (335)
T ss_pred CCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecC
Confidence 3344556688899999999999999999999999999999999999877 999999999999999999999999999999
Q ss_pred eEEEEEEeecCCC
Q 023648 108 RVVRVSEVATRGR 120 (279)
Q Consensus 108 r~i~V~~a~~~~~ 120 (279)
+.|.|.+...+..
T Consensus 171 rri~VDvERgRTv 183 (335)
T KOG0113|consen 171 RRILVDVERGRTV 183 (335)
T ss_pred cEEEEEecccccc
Confidence 9999998866544
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.83 E-value=1.2e-19 Score=147.03 Aligned_cols=85 Identities=33% Similarity=0.700 Sum_probs=79.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
....++|||+|||+.+++++|+++|++||.|+.|.|+.+..+ +++|||||+|.+.++|++||+.|++..|+|+.|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 345679999999999999999999999999999999999877 8999999999999999999999999999999999999
Q ss_pred eecCCC
Q 023648 115 VATRGR 120 (279)
Q Consensus 115 a~~~~~ 120 (279)
+..+..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 976554
No 4
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.78 E-value=3.4e-18 Score=141.64 Aligned_cols=84 Identities=37% Similarity=0.634 Sum_probs=78.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
.++.-++|-|-||.+-|+.++|..+|++||.|..|.|+.+..| ..+|||||-|....+|+.||++|+|.+|+|+.|.|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 3445569999999999999999999999999999999999988 899999999999999999999999999999999999
Q ss_pred EeecC
Q 023648 114 EVATR 118 (279)
Q Consensus 114 ~a~~~ 118 (279)
+|+-.
T Consensus 89 ~aryg 93 (256)
T KOG4207|consen 89 MARYG 93 (256)
T ss_pred hhhcC
Confidence 98643
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.70 E-value=1.5e-16 Score=146.56 Aligned_cols=82 Identities=33% Similarity=0.495 Sum_probs=77.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEee
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~ 116 (279)
.+.+|||+|||+.+++++|.++|++||.|..|+|+.+..+ .++|||||+|.+.++|.+||..|||..|+|+.|+|.|+.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 3457999999999999999999999999999999999855 899999999999999999999999999999999999998
Q ss_pred cCC
Q 023648 117 TRG 119 (279)
Q Consensus 117 ~~~ 119 (279)
.+.
T Consensus 348 ~~~ 350 (352)
T TIGR01661 348 NKA 350 (352)
T ss_pred CCC
Confidence 764
No 6
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.69 E-value=1.9e-16 Score=111.42 Aligned_cols=70 Identities=34% Similarity=0.764 Sum_probs=66.5
Q ss_pred EEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEE
Q 023648 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (279)
Q Consensus 42 l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~ 111 (279)
|||+|||.++++++|.++|.+||.|..+.|+.+.....++||||+|.+.++|+.|++.|+|..|+|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999885558899999999999999999999999999999985
No 7
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=7.4e-17 Score=124.28 Aligned_cols=87 Identities=24% Similarity=0.391 Sum_probs=79.3
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 34 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
.+....+|||||||++-|+|++|.++|+++|+|..|.|-.|+.+ .+.|||||+|...++|+.||.-++|+.++.++|.|
T Consensus 31 ~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~ 110 (153)
T KOG0121|consen 31 EALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRI 110 (153)
T ss_pred HHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceee
Confidence 34456789999999999999999999999999999999999888 68999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 023648 113 SEVATRGR 120 (279)
Q Consensus 113 ~~a~~~~~ 120 (279)
.+.-.-..
T Consensus 111 D~D~GF~e 118 (153)
T KOG0121|consen 111 DWDAGFVE 118 (153)
T ss_pred eccccchh
Confidence 98755443
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.66 E-value=3.7e-16 Score=143.64 Aligned_cols=84 Identities=25% Similarity=0.420 Sum_probs=77.7
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
.....++|||+|||+++++++|+++|+.||+|+.|+|+.+..+ +.+|||||+|.++++|+.||+.|+++.|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 3446789999999999999999999999999999999998776 889999999999999999999999999999999999
Q ss_pred EeecC
Q 023648 114 EVATR 118 (279)
Q Consensus 114 ~a~~~ 118 (279)
++.+.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 88653
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.66 E-value=5e-16 Score=143.16 Aligned_cols=82 Identities=27% Similarity=0.550 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEee
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~ 116 (279)
+.++|||+|||+.+++++|+++|.+||+|..|+|+.++.+ +++|||||+|.+.++|++||+.|+|..|.|++|.|+++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 4579999999999999999999999999999999998766 899999999999999999999999999999999999987
Q ss_pred cCC
Q 023648 117 TRG 119 (279)
Q Consensus 117 ~~~ 119 (279)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 644
No 10
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=1.9e-15 Score=123.43 Aligned_cols=81 Identities=31% Similarity=0.521 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEee
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~ 116 (279)
...++|||+|||.+|.+.+|+++|-|||.|..|.|..... ..+||||+|++..+|+.||..-+|..++|..|.|+++.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g--~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG--PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC--CCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4467999999999999999999999999999998865432 57899999999999999999999999999999999987
Q ss_pred cCC
Q 023648 117 TRG 119 (279)
Q Consensus 117 ~~~ 119 (279)
.-.
T Consensus 82 ggr 84 (241)
T KOG0105|consen 82 GGR 84 (241)
T ss_pred CCC
Confidence 543
No 11
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.60 E-value=1e-14 Score=134.04 Aligned_cols=83 Identities=28% Similarity=0.543 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECC--eEEEEEE
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDG--RVVRVSE 114 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~g--r~i~V~~ 114 (279)
..++|||+|||+.+++++|+++|++||.|+.|.|+.++.+ +.+|||||+|.+.++|++||+.|+++.|.+ .+|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 4578999999999999999999999999999999988766 889999999999999999999999999876 6899998
Q ss_pred eecCCC
Q 023648 115 VATRGR 120 (279)
Q Consensus 115 a~~~~~ 120 (279)
+.....
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 876544
No 12
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.60 E-value=8e-15 Score=103.72 Aligned_cols=70 Identities=33% Similarity=0.723 Sum_probs=64.6
Q ss_pred EEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEE
Q 023648 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (279)
Q Consensus 42 l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~ 111 (279)
|||+|||+.+++++|.++|..||.|..|.+..++.+..+++|||+|.++++|..|++.+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999987777899999999999999999999999999999884
No 13
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=3.1e-15 Score=131.71 Aligned_cols=84 Identities=29% Similarity=0.593 Sum_probs=77.5
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 34 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
........|+|.|||+...+-||..+|++||.|..|.|+.+..+ +|||+||+|++.++|++|-++|||.+|.|++|.|.
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 34566789999999999999999999999999999999998655 89999999999999999999999999999999999
Q ss_pred EeecC
Q 023648 114 EVATR 118 (279)
Q Consensus 114 ~a~~~ 118 (279)
.++.+
T Consensus 170 ~ATar 174 (376)
T KOG0125|consen 170 NATAR 174 (376)
T ss_pred ccchh
Confidence 88654
No 14
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=6.8e-15 Score=124.99 Aligned_cols=82 Identities=33% Similarity=0.522 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
....+|-|.||+.++++.+|+++|.+||.|..|.|..|+.| .++|||||.|.+.++|.+||..|||.-++.-.|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 45678999999999999999999999999999999999988 89999999999999999999999999999999999999
Q ss_pred ecC
Q 023648 116 ATR 118 (279)
Q Consensus 116 ~~~ 118 (279)
+|.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 875
No 15
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=5.3e-15 Score=115.03 Aligned_cols=84 Identities=26% Similarity=0.427 Sum_probs=78.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
..+..|||.++..++++++|.+.|..||+|++|+|..+..+ ..+|||+|+|++.++|++||..|||..|.|..|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 44678999999999999999999999999999999999877 89999999999999999999999999999999999999
Q ss_pred ecCCC
Q 023648 116 ATRGR 120 (279)
Q Consensus 116 ~~~~~ 120 (279)
.-.+.
T Consensus 150 Fv~gp 154 (170)
T KOG0130|consen 150 FVKGP 154 (170)
T ss_pred EecCC
Confidence 76654
No 16
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.57 E-value=1.3e-14 Score=126.24 Aligned_cols=76 Identities=22% Similarity=0.388 Sum_probs=70.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
..+|||+|||+.+++++|+++|+.||.|..|.|+.+.. .+|||||+|.+.++|+.||. |+|..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 56999999999999999999999999999999998764 46899999999999999996 999999999999998754
No 17
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1.3e-14 Score=122.74 Aligned_cols=78 Identities=32% Similarity=0.680 Sum_probs=72.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
-++||||+|+|+|..+.|+++|++||+|++..|+.|+.+ +++||+||+|.+.+.|..|++. -+-.|+|++..|.+|.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 468999999999999999999999999999999999988 9999999999999999999996 45689999999988754
No 18
>smart00362 RRM_2 RNA recognition motif.
Probab=99.54 E-value=6.3e-14 Score=97.70 Aligned_cols=72 Identities=35% Similarity=0.704 Sum_probs=67.1
Q ss_pred eEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 41 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
+|||+|||..+++++|.++|.+||.|..+.++.+. +...++|||+|.+.++|+.|+..|++..|.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998776 5678999999999999999999999999999999873
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.52 E-value=6.3e-14 Score=135.42 Aligned_cols=82 Identities=24% Similarity=0.549 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
....+|||+|||+.+++++|.++|..||.|..|.|+.+..+ ..+|||||+|.+.++|+.||+.|+|..|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 45679999999999999999999999999999999988765 78999999999999999999999999999999999998
Q ss_pred ecC
Q 023648 116 ATR 118 (279)
Q Consensus 116 ~~~ 118 (279)
...
T Consensus 373 ~~~ 375 (509)
T TIGR01642 373 CVG 375 (509)
T ss_pred ccC
Confidence 643
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.52 E-value=5e-14 Score=136.74 Aligned_cols=83 Identities=25% Similarity=0.477 Sum_probs=77.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEee
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~ 116 (279)
..++|||+|||+++++++|+++|+.||.|+.|.|+.+..+ +.+|||||+|.+.++|..||+.||+..|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 4579999999999999999999999999999999998876 789999999999999999999999999999999999987
Q ss_pred cCCC
Q 023648 117 TRGR 120 (279)
Q Consensus 117 ~~~~ 120 (279)
+.+.
T Consensus 283 ~pP~ 286 (612)
T TIGR01645 283 TPPD 286 (612)
T ss_pred CCcc
Confidence 6443
No 21
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=2e-15 Score=123.02 Aligned_cols=82 Identities=34% Similarity=0.751 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
....-|||||||+++||.+|.-+|++||+|+.|.|+.|+.| +++||||+.|++..+..-|+..|||..|.|+.|+|.+.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 34568999999999999999999999999999999999988 99999999999999999999999999999999999977
Q ss_pred ecC
Q 023648 116 ATR 118 (279)
Q Consensus 116 ~~~ 118 (279)
..-
T Consensus 113 ~~Y 115 (219)
T KOG0126|consen 113 SNY 115 (219)
T ss_pred ccc
Confidence 443
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.52 E-value=4.6e-14 Score=136.97 Aligned_cols=80 Identities=30% Similarity=0.627 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
....++|||+|||+.+++++|+++|.+||.|..|.|+.++.+ +++|||||+|.+.++|+.||+.|||..|.|+.|+|..
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 455689999999999999999999999999999999999776 8999999999999999999999999999999999974
Q ss_pred e
Q 023648 115 V 115 (279)
Q Consensus 115 a 115 (279)
.
T Consensus 184 p 184 (612)
T TIGR01645 184 P 184 (612)
T ss_pred c
Confidence 3
No 23
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=3.1e-14 Score=122.57 Aligned_cols=90 Identities=31% Similarity=0.547 Sum_probs=82.4
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 34 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
.......-|||+-|...++-++|++.|.+||+|..++|++|..| ++|||+||.|.+.++|+.||..|||.+|+++.|+-
T Consensus 57 ~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRT 136 (321)
T KOG0148|consen 57 PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRT 136 (321)
T ss_pred CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeec
Confidence 34445678999999999999999999999999999999999888 99999999999999999999999999999999999
Q ss_pred EEeecCCCCCC
Q 023648 113 SEVATRGRKSN 123 (279)
Q Consensus 113 ~~a~~~~~~~~ 123 (279)
.||+.++...+
T Consensus 137 NWATRKp~e~n 147 (321)
T KOG0148|consen 137 NWATRKPSEMN 147 (321)
T ss_pred cccccCccccC
Confidence 99988774433
No 24
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.51 E-value=1e-13 Score=119.06 Aligned_cols=76 Identities=24% Similarity=0.345 Sum_probs=69.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEee
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~ 116 (279)
.+.+|||+||++.+|+++|++||+.||+|..|.|+.+.. ..+||||+|.+++.|+.||. |+|..|.+.+|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e--t~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE--YACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC--cceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 467999999999999999999999999999999998743 45799999999999999996 99999999999998653
No 25
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.51 E-value=8.3e-14 Score=132.89 Aligned_cols=79 Identities=30% Similarity=0.620 Sum_probs=75.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
..+|||+|||..+++++|+++|++||.|..|.|+.+..+ +.+|||||+|.+.++|..||..|+|..|.|++|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 579999999999999999999999999999999998877 8899999999999999999999999999999999999863
No 26
>PLN03213 repressor of silencing 3; Provisional
Probab=99.51 E-value=6.6e-14 Score=129.12 Aligned_cols=78 Identities=26% Similarity=0.461 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcCh--HHHHHHHHhcCCcEECCeEEEEEE
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNP--RSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~--~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
..+.+||||||++.+++++|..+|..||.|..|.|+.. + .+|||||+|... .++.+||..|||..++|+.|+|+.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--T-GRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--K-GRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--c-CCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 34579999999999999999999999999999999943 2 399999999987 789999999999999999999998
Q ss_pred eec
Q 023648 115 VAT 117 (279)
Q Consensus 115 a~~ 117 (279)
|++
T Consensus 85 AKP 87 (759)
T PLN03213 85 AKE 87 (759)
T ss_pred ccH
Confidence 854
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.50 E-value=2.9e-13 Score=131.10 Aligned_cols=77 Identities=27% Similarity=0.541 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccC--CCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKY--GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
....+|||+||++.+++++|+++|++| |.|+.|.++ ++||||+|.+.++|++||+.||+..|.|+.|+|.+
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 445789999999999999999999999 999999885 45999999999999999999999999999999999
Q ss_pred eecCCC
Q 023648 115 VATRGR 120 (279)
Q Consensus 115 a~~~~~ 120 (279)
+++...
T Consensus 304 Akp~~~ 309 (578)
T TIGR01648 304 AKPVDK 309 (578)
T ss_pred ccCCCc
Confidence 987644
No 28
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.50 E-value=1e-13 Score=135.79 Aligned_cols=77 Identities=32% Similarity=0.595 Sum_probs=73.6
Q ss_pred eEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 41 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
+|||+|||.++|+++|.++|.+||.|..|.|+.+..+ +++|||||+|.+.++|++||..|++..|.|+.|+|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 7999999999999999999999999999999999876 8999999999999999999999999999999999998754
No 29
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1.7e-13 Score=118.12 Aligned_cols=87 Identities=32% Similarity=0.537 Sum_probs=78.8
Q ss_pred HhhhcCCCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCe
Q 023648 29 EERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGR 108 (279)
Q Consensus 29 ~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr 108 (279)
++.........++||||||+..+++++|++.|..||+|.+|+|.++ +|||||.|++.|.|..||..||++.|.|.
T Consensus 154 deV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~tkEaAahAIv~mNntei~G~ 228 (321)
T KOG0148|consen 154 DEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVRFETKEAAAHAIVQMNNTEIGGQ 228 (321)
T ss_pred HHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEEEEecchhhHHHHHHHhcCceeCce
Confidence 4455666778899999999999999999999999999999999985 78999999999999999999999999999
Q ss_pred EEEEEEeecCCC
Q 023648 109 VVRVSEVATRGR 120 (279)
Q Consensus 109 ~i~V~~a~~~~~ 120 (279)
.|++.|-+....
T Consensus 229 ~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 229 LVRCSWGKEGDD 240 (321)
T ss_pred EEEEeccccCCC
Confidence 999998866443
No 30
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.48 E-value=2e-13 Score=130.28 Aligned_cols=81 Identities=28% Similarity=0.466 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
..+..+|||+|||..+++++|+++|.+||.|..|.|+.+..+ +.+|||||+|.+.++|++||. |+|..|.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 345679999999999999999999999999999999998776 789999999999999999997 999999999999987
Q ss_pred eec
Q 023648 115 VAT 117 (279)
Q Consensus 115 a~~ 117 (279)
+..
T Consensus 165 ~~~ 167 (457)
T TIGR01622 165 SQA 167 (457)
T ss_pred cch
Confidence 654
No 31
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.48 E-value=4.6e-13 Score=93.77 Aligned_cols=74 Identities=36% Similarity=0.740 Sum_probs=69.3
Q ss_pred eEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 41 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
+|||+|||..+++++|.++|..||.|..+.+..+..+...++|||+|.+.++|..|++.+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999999877667789999999999999999999999999999999863
No 32
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=2e-13 Score=101.67 Aligned_cols=80 Identities=21% Similarity=0.443 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEee
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~ 116 (279)
.....|||.|||+.+|.+++.++|.+||.|..|.|-..+. .+|-|||.|++..+|.+|+.+|.|..+.++.|.|-+-.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~--TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE--TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC--cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 3456899999999999999999999999999999976655 57899999999999999999999999999999998876
Q ss_pred cC
Q 023648 117 TR 118 (279)
Q Consensus 117 ~~ 118 (279)
+.
T Consensus 94 ~~ 95 (124)
T KOG0114|consen 94 PE 95 (124)
T ss_pred HH
Confidence 53
No 33
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.47 E-value=2.1e-13 Score=133.53 Aligned_cols=83 Identities=25% Similarity=0.544 Sum_probs=77.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
.....+|||+||+..+++++|+++|++||.|+.|+|+.+..+..+|||||+|.+.++|.+||..|||..|+|++|.|.++
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 44567899999999999999999999999999999999966789999999999999999999999999999999999999
Q ss_pred ecC
Q 023648 116 ATR 118 (279)
Q Consensus 116 ~~~ 118 (279)
..+
T Consensus 362 ~~k 364 (562)
T TIGR01628 362 QRK 364 (562)
T ss_pred cCc
Confidence 754
No 34
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.47 E-value=6.4e-14 Score=114.31 Aligned_cols=82 Identities=30% Similarity=0.495 Sum_probs=77.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
..+...|||||||+..++++.|.++|-+.|+|..|+|+.++.+ ..+|||||+|.++++|+-|++.|+...|.|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 3456779999999999999999999999999999999999988 699999999999999999999999999999999999
Q ss_pred Eee
Q 023648 114 EVA 116 (279)
Q Consensus 114 ~a~ 116 (279)
.+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 886
No 35
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.46 E-value=2.3e-13 Score=131.80 Aligned_cols=76 Identities=30% Similarity=0.539 Sum_probs=69.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEEC-CeEEEEE
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID-GRVVRVS 113 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~-gr~i~V~ 113 (279)
..++|||+|||.++++++|.++|++||.|..|+|+.+..++++|||||+|.+.++|++||+.||+..|. |+.|.|.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 458999999999999999999999999999999999966689999999999999999999999999885 6666554
No 36
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=7.2e-14 Score=117.11 Aligned_cols=85 Identities=28% Similarity=0.521 Sum_probs=79.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEee
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~ 116 (279)
.-.+||||+|..++++..|...|-.||.|+.|.|+.+..+ +.+|||||+|...++|.+||..||+..|-|+.|.|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 4569999999999999999999999999999999999887 899999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 023648 117 TRGRKS 122 (279)
Q Consensus 117 ~~~~~~ 122 (279)
|..-..
T Consensus 89 P~kike 94 (298)
T KOG0111|consen 89 PEKIKE 94 (298)
T ss_pred CccccC
Confidence 876543
No 37
>smart00360 RRM RNA recognition motif.
Probab=99.44 E-value=5.6e-13 Score=92.44 Aligned_cols=70 Identities=36% Similarity=0.758 Sum_probs=64.9
Q ss_pred EcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 44 VGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 44 V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
|+|||..+++++|..+|.+||.|..+.|..+..+ .+++||||+|.+.++|..|+..|++..|.|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6799999999999999999999999999987654 788999999999999999999999999999999873
No 38
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.44 E-value=5.5e-13 Score=128.23 Aligned_cols=78 Identities=27% Similarity=0.398 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCC-CCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 37 DDESSVYVGGLPY-SANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 37 ~~~~~l~V~nLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
.++++|||+|||+ .+++++|.++|+.||.|..|+|+.+ .+|||||+|.+.++|..||..|||..|.|++|.|.++
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 4678999999998 6999999999999999999999886 4689999999999999999999999999999999988
Q ss_pred ecC
Q 023648 116 ATR 118 (279)
Q Consensus 116 ~~~ 118 (279)
+..
T Consensus 349 ~~~ 351 (481)
T TIGR01649 349 KQQ 351 (481)
T ss_pred ccc
Confidence 654
No 39
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.43 E-value=6.8e-13 Score=115.59 Aligned_cols=79 Identities=37% Similarity=0.793 Sum_probs=74.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
..+|||+|||..+++++|.++|.+||.|..|.|+.+..+ ..+|||||+|.+.++|..|+..|++..|.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 589999999999999999999999999999999998644 8999999999999999999999999999999999999764
No 40
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=3.9e-13 Score=119.64 Aligned_cols=84 Identities=24% Similarity=0.427 Sum_probs=78.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
..+|...|||..|++.|+.++|+-+|+.||.|..|.|+.+..+ .+..||||+|++.++|++|.-+|++..|+.+.|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 3467789999999999999999999999999999999999877 788999999999999999999999999999999999
Q ss_pred EeecC
Q 023648 114 EVATR 118 (279)
Q Consensus 114 ~a~~~ 118 (279)
|+..-
T Consensus 315 FSQSV 319 (479)
T KOG0415|consen 315 FSQSV 319 (479)
T ss_pred hhhhh
Confidence 98653
No 41
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.39 E-value=1.3e-12 Score=125.57 Aligned_cols=76 Identities=22% Similarity=0.247 Sum_probs=69.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhc--CCcEECCeEEEEEEe
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM--NGRTIDGRVVRVSEV 115 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l--~g~~i~gr~i~V~~a 115 (279)
|..+|||+|||+.+++++|.++|++||.|..|.|+. .++||||+|.+.++|++||+.| ++..|.|++|.|+++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-----~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-----GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-----CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 357999999999999999999999999999999986 3689999999999999999864 789999999999998
Q ss_pred ecC
Q 023648 116 ATR 118 (279)
Q Consensus 116 ~~~ 118 (279)
...
T Consensus 76 ~~~ 78 (481)
T TIGR01649 76 TSQ 78 (481)
T ss_pred CCc
Confidence 643
No 42
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=1.5e-12 Score=119.04 Aligned_cols=79 Identities=28% Similarity=0.522 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEE-CCeEEEEEE
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTI-DGRVVRVSE 114 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i-~gr~i~V~~ 114 (279)
..++-||||.||.++.|++|.-+|++.|+|-.++|+.++.+ .++|||||.|.+.++|+.||+.||+..| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 45789999999999999999999999999999999999655 8999999999999999999999999988 589998876
Q ss_pred e
Q 023648 115 V 115 (279)
Q Consensus 115 a 115 (279)
+
T Consensus 161 S 161 (506)
T KOG0117|consen 161 S 161 (506)
T ss_pred e
Confidence 6
No 43
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=1.3e-12 Score=121.90 Aligned_cols=83 Identities=25% Similarity=0.479 Sum_probs=78.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
+-..|+|.|||+.+...+|+.+|+.||.|..|.|+....++..|||||+|....+|..||+.||+..|+|++|-|.||.+
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 35689999999999999999999999999999999888888889999999999999999999999999999999999987
Q ss_pred CCC
Q 023648 118 RGR 120 (279)
Q Consensus 118 ~~~ 120 (279)
...
T Consensus 196 Kd~ 198 (678)
T KOG0127|consen 196 KDT 198 (678)
T ss_pred ccc
Confidence 643
No 44
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.37 E-value=7.4e-13 Score=115.17 Aligned_cols=72 Identities=33% Similarity=0.703 Sum_probs=68.8
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeecC
Q 023648 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~~ 118 (279)
..|||||||.++++.+|+.+|++||+|.+|.|++| |+||..++...|+.||..|+|.+|.|..|+|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999876 9999999999999999999999999999999988765
No 45
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=3.4e-12 Score=109.57 Aligned_cols=81 Identities=32% Similarity=0.496 Sum_probs=76.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEee
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~ 116 (279)
.+..|||-||.++++|..|+++|.+||.|..|+|+.|..+ +.+||+||.+.+-++|..||..|||..++++.|.|.+..
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 3679999999999999999999999999999999999987 899999999999999999999999999999999999876
Q ss_pred cC
Q 023648 117 TR 118 (279)
Q Consensus 117 ~~ 118 (279)
.+
T Consensus 357 nk 358 (360)
T KOG0145|consen 357 NK 358 (360)
T ss_pred CC
Confidence 54
No 46
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.37 E-value=3.6e-12 Score=86.26 Aligned_cols=56 Identities=36% Similarity=0.685 Sum_probs=51.0
Q ss_pred HHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 56 VRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 56 L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
|.++|++||+|..|.+..+. .++|||+|.+.++|..|++.|||..|.|++|+|++|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999997753 589999999999999999999999999999999986
No 47
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=7.3e-13 Score=121.02 Aligned_cols=79 Identities=32% Similarity=0.583 Sum_probs=73.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
.+.....|||.||+.+||++.|+++|..||.|+.|+.+.| ||||.|.+.++|.+|++.|||+.|+|..|.|.+
T Consensus 255 ~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtL 327 (506)
T KOG0117|consen 255 TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTL 327 (506)
T ss_pred hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHHHhcCceecCceEEEEe
Confidence 4555679999999999999999999999999999999766 999999999999999999999999999999999
Q ss_pred eecCCC
Q 023648 115 VATRGR 120 (279)
Q Consensus 115 a~~~~~ 120 (279)
|+|...
T Consensus 328 AKP~~k 333 (506)
T KOG0117|consen 328 AKPVDK 333 (506)
T ss_pred cCChhh
Confidence 988644
No 48
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.35 E-value=1.9e-12 Score=121.27 Aligned_cols=81 Identities=36% Similarity=0.696 Sum_probs=77.5
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeecC
Q 023648 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~~ 118 (279)
..|||||||+++++++|..+|+..|.|..++++.|..+ +++||||++|.+.++|+.|+..|||..+.|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 79999999999999999999999999999999999888 99999999999999999999999999999999999999765
Q ss_pred CC
Q 023648 119 GR 120 (279)
Q Consensus 119 ~~ 120 (279)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 54
No 49
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=1.3e-12 Score=112.58 Aligned_cols=87 Identities=30% Similarity=0.531 Sum_probs=81.1
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 34 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
....+++.|||-.||.+....+|..+|-.||.|...+|..|+.| .+|||+||.|.++.+|+.||.+|||..|+-++|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 34567899999999999999999999999999999999999988 89999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 023648 113 SEVATRGR 120 (279)
Q Consensus 113 ~~a~~~~~ 120 (279)
++.+++..
T Consensus 360 QLKRPkda 367 (371)
T KOG0146|consen 360 QLKRPKDA 367 (371)
T ss_pred hhcCcccc
Confidence 98877643
No 50
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=4e-12 Score=109.14 Aligned_cols=83 Identities=29% Similarity=0.563 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
..-+.|+|--||.++|+++|+.+|...|+|+.|+++.|+.+ ++.||+||.|-.+++|++||..|||..+..+.|+|.+|
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 34567889999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred ecCC
Q 023648 116 ATRG 119 (279)
Q Consensus 116 ~~~~ 119 (279)
+|-.
T Consensus 119 RPSs 122 (360)
T KOG0145|consen 119 RPSS 122 (360)
T ss_pred cCCh
Confidence 8753
No 51
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=1.5e-12 Score=116.36 Aligned_cols=75 Identities=32% Similarity=0.681 Sum_probs=72.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
-+.||||.|.+++.|+.|+..|..||+|+.|.|-+|..| +.+|||||+|+-++.|+-|++.|||..++|+.|+|.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 368999999999999999999999999999999999988 999999999999999999999999999999999996
No 52
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=8e-12 Score=116.74 Aligned_cols=85 Identities=32% Similarity=0.582 Sum_probs=76.7
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhc-----CC-cEEC
Q 023648 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM-----NG-RTID 106 (279)
Q Consensus 34 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l-----~g-~~i~ 106 (279)
.....+.+|||.|||+++++++|.++|.+||+|..+.||.++.| +++|.|||.|.+..+|+.||... .| ..|.
T Consensus 287 en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~ 366 (678)
T KOG0127|consen 287 ENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLD 366 (678)
T ss_pred ccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEe
Confidence 34556789999999999999999999999999999999999988 99999999999999999999976 33 6789
Q ss_pred CeEEEEEEeecC
Q 023648 107 GRVVRVSEVATR 118 (279)
Q Consensus 107 gr~i~V~~a~~~ 118 (279)
|+.|+|..|.++
T Consensus 367 GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 367 GRLLKVTLAVTR 378 (678)
T ss_pred ccEEeeeeccch
Confidence 999999988654
No 53
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=2.5e-12 Score=117.07 Aligned_cols=86 Identities=29% Similarity=0.505 Sum_probs=78.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcE-ECC--eEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRT-IDG--RVVRV 112 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~-i~g--r~i~V 112 (279)
.....+||||-|+..++|.+|+++|.+||.|+.|.|..+....++|||||.|.+.+.|..||+.|||.. +.| .+|.|
T Consensus 121 ~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 121 IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 345779999999999999999999999999999999999999999999999999999999999999975 444 68999
Q ss_pred EEeecCCCC
Q 023648 113 SEVATRGRK 121 (279)
Q Consensus 113 ~~a~~~~~~ 121 (279)
.||.+++.+
T Consensus 201 kFADtqkdk 209 (510)
T KOG0144|consen 201 KFADTQKDK 209 (510)
T ss_pred EecccCCCc
Confidence 999877654
No 54
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.28 E-value=6e-12 Score=117.79 Aligned_cols=79 Identities=37% Similarity=0.709 Sum_probs=73.5
Q ss_pred eEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeecCC
Q 023648 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRG 119 (279)
Q Consensus 41 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~~~ 119 (279)
.||||||.+++++.+|..+|+.||.|..|.+..+..+ ..+||+||+|.+.++|.+|++.|||..|.|+.|+|...+.+.
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 4999999999999999999999999999999999844 899999999999999999999999999999999998775543
No 55
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=5.8e-12 Score=114.73 Aligned_cols=87 Identities=28% Similarity=0.518 Sum_probs=75.3
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcE-ECC--eE
Q 023648 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRT-IDG--RV 109 (279)
Q Consensus 34 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~-i~g--r~ 109 (279)
.......+||||.||..++|.+|+++|++||.|.+|.|++|+.+ ..+|||||.|.+.++|.+|+.+|++.+ |-| .+
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 33345568999999999999999999999999999999999988 899999999999999999999998865 444 57
Q ss_pred EEEEEeecCCC
Q 023648 110 VRVSEVATRGR 120 (279)
Q Consensus 110 i~V~~a~~~~~ 120 (279)
|.|.+|.....
T Consensus 109 vqvk~Ad~E~e 119 (510)
T KOG0144|consen 109 VQVKYADGERE 119 (510)
T ss_pred eeecccchhhh
Confidence 88888865443
No 56
>smart00361 RRM_1 RNA recognition motif.
Probab=99.24 E-value=4e-11 Score=85.05 Aligned_cols=60 Identities=30% Similarity=0.547 Sum_probs=52.4
Q ss_pred HHHHHHHhc----cCCCEEEEE-EeeCC-C--CCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 53 EDSVRKVFD----KYGSVVAVK-IVNDR-S--TRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 53 e~~L~~~F~----~~G~I~~v~-i~~d~-~--~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
+++|.++|. +||.|..|. |+.++ . ++++|||||+|.+.++|.+|+..|||..|.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888888 999999985 55544 3 468999999999999999999999999999999986
No 57
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.22 E-value=1e-10 Score=109.02 Aligned_cols=84 Identities=27% Similarity=0.464 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCC-CCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
.....+|||.|||+++++.+|+++|.+||.|+...|..-. ..+..+||||+|.+.+.++.||++ +-..|++++|.|+.
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEE 363 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEe
Confidence 3445679999999999999999999999999987775433 334449999999999999999996 58899999999998
Q ss_pred eecCCC
Q 023648 115 VATRGR 120 (279)
Q Consensus 115 a~~~~~ 120 (279)
..+...
T Consensus 364 k~~~~~ 369 (419)
T KOG0116|consen 364 KRPGFR 369 (419)
T ss_pred cccccc
Confidence 876544
No 58
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.21 E-value=1.7e-11 Score=106.76 Aligned_cols=79 Identities=29% Similarity=0.560 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
....++|+||||.+.++..+|+..|++||+|.++.|+++ |+||.|.-.++|..||..|++++|.|++|+|+++
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 446789999999999999999999999999999999876 9999999999999999999999999999999999
Q ss_pred ecCCCC
Q 023648 116 ATRGRK 121 (279)
Q Consensus 116 ~~~~~~ 121 (279)
+.+-..
T Consensus 148 tsrlrt 153 (346)
T KOG0109|consen 148 TSRLRT 153 (346)
T ss_pred cccccc
Confidence 876443
No 59
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.20 E-value=4.3e-11 Score=109.27 Aligned_cols=79 Identities=24% Similarity=0.457 Sum_probs=74.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhc-cCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFD-KYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
...+||+|||+++.|++|+++|. +.|+|+.|.|..|..++++|||.|+|+++|.+++|++.||...+.|++|+|++...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 45699999999999999999995 79999999999999999999999999999999999999999999999999987654
No 60
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.18 E-value=6.7e-11 Score=114.37 Aligned_cols=74 Identities=22% Similarity=0.390 Sum_probs=61.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccC------------CCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCc
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKY------------GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGR 103 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~------------G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~ 103 (279)
.....+|||+|||+.+++++|.++|.+| +.|..+.+.. .+|||||+|.+.++|..||. |+|+
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~-----~kg~afVeF~~~e~A~~Al~-l~g~ 245 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK-----EKNFAFLEFRTVEEATFAMA-LDSI 245 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC-----CCCEEEEEeCCHHHHhhhhc-CCCe
Confidence 4456799999999999999999999874 3445555433 57899999999999999995 9999
Q ss_pred EECCeEEEEEEe
Q 023648 104 TIDGRVVRVSEV 115 (279)
Q Consensus 104 ~i~gr~i~V~~a 115 (279)
.|.|..|+|...
T Consensus 246 ~~~g~~l~v~r~ 257 (509)
T TIGR01642 246 IYSNVFLKIRRP 257 (509)
T ss_pred EeeCceeEecCc
Confidence 999999998643
No 61
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.17 E-value=7.7e-11 Score=110.66 Aligned_cols=84 Identities=26% Similarity=0.581 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
...+..|||.+|...|...+|+.||++||.|+-.+|+.+..+ ...||+||++.+.++|.++|+.|+-+.|.|+.|.|+.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 344678999999999999999999999999999999998776 7899999999999999999999999999999999998
Q ss_pred eecCC
Q 023648 115 VATRG 119 (279)
Q Consensus 115 a~~~~ 119 (279)
++..+
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 86543
No 62
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.14 E-value=8.8e-11 Score=113.68 Aligned_cols=81 Identities=16% Similarity=0.457 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEee
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~ 116 (279)
...+|||||+|+.+++|.+|..+|+.||+|..|.|+. +.+||||.+....+|++||.+|....|.++.|+|.|+.
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 3468999999999999999999999999999999987 57899999999999999999999999999999999998
Q ss_pred cCCCCC
Q 023648 117 TRGRKS 122 (279)
Q Consensus 117 ~~~~~~ 122 (279)
..+.+.
T Consensus 494 g~G~ks 499 (894)
T KOG0132|consen 494 GKGPKS 499 (894)
T ss_pred cCCcch
Confidence 766543
No 63
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.12 E-value=1.7e-10 Score=97.61 Aligned_cols=84 Identities=15% Similarity=0.448 Sum_probs=73.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHH----HhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRK----VFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~----~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i 110 (279)
.+.+..||||-||+..+..++|+. +|++||.|..|.++. ..+.+|-|||.|.+.+.|-.|+.+|+|..+.|++|
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 345566999999999999888776 999999999987764 23689999999999999999999999999999999
Q ss_pred EEEEeecCCC
Q 023648 111 RVSEVATRGR 120 (279)
Q Consensus 111 ~V~~a~~~~~ 120 (279)
.|++|+....
T Consensus 83 riqyA~s~sd 92 (221)
T KOG4206|consen 83 RIQYAKSDSD 92 (221)
T ss_pred heecccCccc
Confidence 9999976543
No 64
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=3.4e-10 Score=104.99 Aligned_cols=80 Identities=28% Similarity=0.514 Sum_probs=73.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeecC
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~~ 118 (279)
+..|||.||++.++...|.++|+.||.|.+|+|..+..+ .+|| ||+|+++++|.+||..|||..+.++.|.|.....+
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 344999999999999999999999999999999999887 8999 99999999999999999999999999999877655
Q ss_pred CC
Q 023648 119 GR 120 (279)
Q Consensus 119 ~~ 120 (279)
..
T Consensus 154 ~e 155 (369)
T KOG0123|consen 154 EE 155 (369)
T ss_pred hh
Confidence 44
No 65
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.07 E-value=2.5e-10 Score=93.44 Aligned_cols=88 Identities=26% Similarity=0.469 Sum_probs=77.5
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEE-EEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEE
Q 023648 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVA-VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (279)
Q Consensus 34 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~-v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~ 111 (279)
.+..-+..|||+||.+++++..|.++|+.||.|.. -.|+.+..| .++||+||.|.+.+.+.+||..|+|..+..++|.
T Consensus 91 ~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~it 170 (203)
T KOG0131|consen 91 KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPIT 170 (203)
T ss_pred ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceE
Confidence 34455679999999999999999999999999864 567777776 7899999999999999999999999999999999
Q ss_pred EEEeecCCCC
Q 023648 112 VSEVATRGRK 121 (279)
Q Consensus 112 V~~a~~~~~~ 121 (279)
|.++..+..+
T Consensus 171 v~ya~k~~~k 180 (203)
T KOG0131|consen 171 VSYAFKKDTK 180 (203)
T ss_pred EEEEEecCCC
Confidence 9999876554
No 66
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.03 E-value=6.5e-10 Score=106.97 Aligned_cols=78 Identities=24% Similarity=0.555 Sum_probs=70.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC----CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST----RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~----~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
.++|||.||++.++.++|..+|.++|.|..|.|...+.. .+.|||||+|.+.++|+.|++.|+|+.|+|+.|.|.+
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 344999999999999999999999999999988765433 3569999999999999999999999999999999999
Q ss_pred ee
Q 023648 115 VA 116 (279)
Q Consensus 115 a~ 116 (279)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 87
No 67
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.02 E-value=3.2e-10 Score=96.54 Aligned_cols=74 Identities=35% Similarity=0.717 Sum_probs=68.5
Q ss_pred eEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeecCCC
Q 023648 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGR 120 (279)
Q Consensus 41 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~~~~ 120 (279)
.||||+||+.+.+.+|+.||..||.|..|.|. .||+||+|.+..+|..|+..||+..|.|..|.|+++.....
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 69999999999999999999999999999884 56999999999999999999999999999999999987654
Q ss_pred C
Q 023648 121 K 121 (279)
Q Consensus 121 ~ 121 (279)
.
T Consensus 76 ~ 76 (216)
T KOG0106|consen 76 G 76 (216)
T ss_pred c
Confidence 4
No 68
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.02 E-value=1e-09 Score=91.60 Aligned_cols=85 Identities=22% Similarity=0.354 Sum_probs=75.9
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhccC-CCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEE
Q 023648 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKY-GSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (279)
Q Consensus 34 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~ 111 (279)
........+||..||..+.+.+|..+|.+| |.|..+.+..++.| .++|||||+|++++.|+-|.+.||+..|.++.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 344556789999999999999999999998 78888888888777 8999999999999999999999999999999999
Q ss_pred EEEeecC
Q 023648 112 VSEVATR 118 (279)
Q Consensus 112 V~~a~~~ 118 (279)
|.+-.+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9877655
No 69
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=8.3e-10 Score=98.44 Aligned_cols=74 Identities=27% Similarity=0.439 Sum_probs=66.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhc-CCcEECCeEEEEEEeec
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM-NGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l-~g~~i~gr~i~V~~a~~ 117 (279)
-.+|||++|...+++.+|.++|.+||+|..|.++. .+++|||+|.+.+.|+.|.+++ +...|+|.+|+|.|..+
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~-----~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP-----RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeec-----ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 36999999999999999999999999999999987 3679999999999999888754 55678999999999988
No 70
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=1.1e-09 Score=98.10 Aligned_cols=79 Identities=27% Similarity=0.511 Sum_probs=73.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
...|||..+.+++++++|+.+|+.||+|+.|.+.....+ ..+||+||+|.+......||..||-..|+|.-|.|-.+..
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 459999999999999999999999999999999998887 7999999999999999999999999999999999975543
No 71
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=1.4e-09 Score=100.78 Aligned_cols=75 Identities=27% Similarity=0.466 Sum_probs=70.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeecCC
Q 023648 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRG 119 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~~~ 119 (279)
..|||| +.+|+..|.++|+.+|+|..|+||.+. | +.|||||.|.++.+|++||..||...|.|++|.|-|+...+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 379998 899999999999999999999999999 8 99999999999999999999999999999999999886543
No 72
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.96 E-value=1.9e-09 Score=93.66 Aligned_cols=83 Identities=24% Similarity=0.469 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEee
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~ 116 (279)
...++|+|.|||+.|++.+|+++|..||.++.+.|..+..+.+.|.|-|.|...++|+.|++.|+|+.++|..|+|+...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred cCC
Q 023648 117 TRG 119 (279)
Q Consensus 117 ~~~ 119 (279)
+..
T Consensus 161 ~~~ 163 (243)
T KOG0533|consen 161 SPS 163 (243)
T ss_pred Ccc
Confidence 543
No 73
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.88 E-value=2.2e-09 Score=96.74 Aligned_cols=82 Identities=30% Similarity=0.661 Sum_probs=74.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEee
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~ 116 (279)
..++|||++|+++++++.|.++|.+||+|..|.|+.+..+ ..+||+||+|.+.+.+.++|. ...+.|.|+.|.++.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 5789999999999999999999999999999999999888 899999999999999999887 45688999999998887
Q ss_pred cCCC
Q 023648 117 TRGR 120 (279)
Q Consensus 117 ~~~~ 120 (279)
++..
T Consensus 84 ~r~~ 87 (311)
T KOG4205|consen 84 SRED 87 (311)
T ss_pred Cccc
Confidence 6653
No 74
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.87 E-value=6.4e-10 Score=95.65 Aligned_cols=113 Identities=17% Similarity=0.224 Sum_probs=79.2
Q ss_pred cccCCCCcccccccccCccchhhhhhhHhhhcCCCCCCCeEEEcCCCCCCc-------HHHHHHHhc-cCCCEEEEEEee
Q 023648 2 VCREGGRQGVSTSIVVPIKARVIFNLIEERVKMTIDDESSVYVGGLPYSAN-------EDSVRKVFD-KYGSVVAVKIVN 73 (279)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t-------e~~L~~~F~-~~G~I~~v~i~~ 73 (279)
+|+++.+|+...-.+.-.+ ++++.+|.+.+.+.....-. -+..|+...- -++|...|+ +||+|+.+.|+.
T Consensus 26 acR~gdrcsR~h~kpt~s~-t~ll~nmyq~P~~~~~~~d~-~~~~~~de~~q~~~defyEd~f~E~~~kygEiee~~Vc~ 103 (260)
T KOG2202|consen 26 ACRHGDRCSRLHEKPTFSQ-TVLLKNMYQNPENSWERRDA-QGQFLTDEELQRHEDEFYEDVFTELEDKYGEIEELNVCD 103 (260)
T ss_pred ccccccHHHHhhcccccch-HHHHHHHHhCCCCCchhhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Confidence 6999999999844444433 34444466665544221000 1111221111 123444445 999999999999
Q ss_pred CCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEee
Q 023648 74 DRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (279)
Q Consensus 74 d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~ 116 (279)
+...+..|.+||.|..+++|++|++.||+.+|.|++|..++..
T Consensus 104 Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 104 NLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred ccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 9888999999999999999999999999999999999998773
No 75
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.87 E-value=8.8e-10 Score=92.69 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
...||||+||...++|+.|.++|-+-|+|..|.|..++..+.+ ||||.|+++..+.-|++.|||..+.+.+|.|.+-+.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 3569999999999999999999999999999999988877777 999999999999999999999999999999986654
No 76
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=2e-09 Score=103.70 Aligned_cols=80 Identities=24% Similarity=0.509 Sum_probs=73.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEee
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~ 116 (279)
..+.|+|.|||+.++..+|+.+|..||.|..|.|+..... ...|||||+|-++.+|.+|+.+|..+-|.|+.|.++|+.
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 3689999999999999999999999999999999876332 568999999999999999999999999999999999996
Q ss_pred c
Q 023648 117 T 117 (279)
Q Consensus 117 ~ 117 (279)
.
T Consensus 692 ~ 692 (725)
T KOG0110|consen 692 S 692 (725)
T ss_pred c
Confidence 4
No 77
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=4.7e-09 Score=90.77 Aligned_cols=83 Identities=25% Similarity=0.434 Sum_probs=73.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEE-C--CeEEEEEE
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI-D--GRVVRVSE 114 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i-~--gr~i~V~~ 114 (279)
...+||||-|...-.|+++..+|..||.|.+|.+.....+.+||||||.|.+..+|+.||..|+|... - ..-|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 45799999999999999999999999999999999988889999999999999999999999999654 3 35688888
Q ss_pred eecCCC
Q 023648 115 VATRGR 120 (279)
Q Consensus 115 a~~~~~ 120 (279)
+...+.
T Consensus 98 ADTdkE 103 (371)
T KOG0146|consen 98 ADTDKE 103 (371)
T ss_pred ccchHH
Confidence 866543
No 78
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.80 E-value=3.2e-08 Score=83.62 Aligned_cols=84 Identities=19% Similarity=0.381 Sum_probs=69.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeC-CCC-CCceEEEEEEcChHHHHHHHHhcCCcEEC---CeEEEE
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVND-RST-RGKCYGFVTFGNPRSAVDAINDMNGRTID---GRVVRV 112 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d-~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~---gr~i~V 112 (279)
...||||.+||.++...+|..+|..|--.+.+.|... +.+ ..+-+|||+|.+...|++|++.|||+.|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3579999999999999999999999866665555432 222 34569999999999999999999999996 789999
Q ss_pred EEeecCCCC
Q 023648 113 SEVATRGRK 121 (279)
Q Consensus 113 ~~a~~~~~~ 121 (279)
++++...+.
T Consensus 113 ElAKSNtK~ 121 (284)
T KOG1457|consen 113 ELAKSNTKR 121 (284)
T ss_pred eehhcCccc
Confidence 999876654
No 79
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.80 E-value=1.8e-08 Score=89.90 Aligned_cols=84 Identities=25% Similarity=0.364 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEE--------EEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCe
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVV--------AVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGR 108 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~--------~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr 108 (279)
...+.|||.|||.++|.+++.++|++||-|. .|+|..+..++.+|=|.|.|-..++++-||+.|++..|.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3456799999999999999999999999885 37888888889999999999999999999999999999999
Q ss_pred EEEEEEeecCCC
Q 023648 109 VVRVSEVATRGR 120 (279)
Q Consensus 109 ~i~V~~a~~~~~ 120 (279)
.|.|+.|+-...
T Consensus 212 ~~rVerAkfq~K 223 (382)
T KOG1548|consen 212 KLRVERAKFQMK 223 (382)
T ss_pred EEEEehhhhhhc
Confidence 999998865433
No 80
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.79 E-value=1.4e-08 Score=88.23 Aligned_cols=83 Identities=22% Similarity=0.384 Sum_probs=76.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
...+...+||+|+.+.++.++|+.+|+.||.|..|.|+.++.. +++|||||+|.+.+.++.||. |++..|.|..|.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 3456779999999999999999999999999999999999887 799999999999999999999 99999999999999
Q ss_pred EeecC
Q 023648 114 EVATR 118 (279)
Q Consensus 114 ~a~~~ 118 (279)
+....
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 88766
No 81
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.78 E-value=9.1e-09 Score=92.80 Aligned_cols=83 Identities=28% Similarity=0.526 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEee
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~ 116 (279)
....|||++||..+++.+|+++|++||.|..+.|+.+..+ ..+||+||.|.+++.+.+++. ..-+.|+++.|.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 3458999999999999999999999999999999999888 899999999999999999988 57889999999999998
Q ss_pred cCCCC
Q 023648 117 TRGRK 121 (279)
Q Consensus 117 ~~~~~ 121 (279)
++...
T Consensus 175 pk~~~ 179 (311)
T KOG4205|consen 175 PKEVM 179 (311)
T ss_pred chhhc
Confidence 76553
No 82
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.78 E-value=1.3e-08 Score=98.04 Aligned_cols=81 Identities=26% Similarity=0.454 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC----CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST----RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~----~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
...+.|||+||++.++++.|...|..||+|..|+|+..... ....|+||.|-+..+|++|++.|+|..|.+..|++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 44678999999999999999999999999999999986543 35669999999999999999999999999999999
Q ss_pred EEeec
Q 023648 113 SEVAT 117 (279)
Q Consensus 113 ~~a~~ 117 (279)
-|.+.
T Consensus 252 gWgk~ 256 (877)
T KOG0151|consen 252 GWGKA 256 (877)
T ss_pred ccccc
Confidence 98843
No 83
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.75 E-value=1.5e-08 Score=92.85 Aligned_cols=76 Identities=26% Similarity=0.441 Sum_probs=67.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
....++|||.|||+++||+.|++-|..||.|..+.|+.+ ++.+| .|.|.++++|+.|+..|+|..|.|+.|+|.+.
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~--GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN--GKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhcc--CCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 455678999999999999999999999999999988543 23444 89999999999999999999999999999863
No 84
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.70 E-value=8.3e-09 Score=97.16 Aligned_cols=75 Identities=24% Similarity=0.429 Sum_probs=67.2
Q ss_pred cCCCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEE
Q 023648 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (279)
Q Consensus 33 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~ 111 (279)
.....+..+|+|-|||..|++++|..+|+.||+|..|..-.. ..|.+||+|.+..+|+.||++|++..|.|+.|+
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 333456789999999999999999999999999999877554 578999999999999999999999999999988
No 85
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.53 E-value=4.9e-07 Score=82.53 Aligned_cols=76 Identities=22% Similarity=0.371 Sum_probs=69.1
Q ss_pred CCeEEEcCCCCC-CcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 39 ESSVYVGGLPYS-ANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 39 ~~~l~V~nLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
...|.|.||... +|.+.|..+|+.||.|..|+|..++ +-.|.|+|.+...|+-|+++|+|..|.|++|+|.+++-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 578899999765 7999999999999999999999884 35899999999999999999999999999999998864
Q ss_pred C
Q 023648 118 R 118 (279)
Q Consensus 118 ~ 118 (279)
.
T Consensus 373 ~ 373 (492)
T KOG1190|consen 373 T 373 (492)
T ss_pred c
Confidence 3
No 86
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.46 E-value=1.2e-06 Score=65.76 Aligned_cols=80 Identities=20% Similarity=0.368 Sum_probs=68.7
Q ss_pred CeEEEcCCCCCCcHHHHHHHhcc--CCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEEC----CeEEEE
Q 023648 40 SSVYVGGLPYSANEDSVRKVFDK--YGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTID----GRVVRV 112 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~L~~~F~~--~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~----gr~i~V 112 (279)
+||.|.|||...+.++|.+++.. .|....+-|+.|..+ -..|||||.|.+.+.|....+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999888865 467778888888766 68999999999999999999999999875 677788
Q ss_pred EEeecCC
Q 023648 113 SEVATRG 119 (279)
Q Consensus 113 ~~a~~~~ 119 (279)
.+|+-++
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 8887654
No 87
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.46 E-value=3.3e-07 Score=78.27 Aligned_cols=71 Identities=21% Similarity=0.407 Sum_probs=63.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
.....+.|+|.+|+..+.+++|.++|.+||.+....+ ..+++||+|.+.++|..||..|++..|.++.|.+
T Consensus 95 p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 95 PSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred cccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 3455788999999999999999999999999955444 3569999999999999999999999999999999
No 88
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.44 E-value=2.1e-07 Score=88.26 Aligned_cols=86 Identities=27% Similarity=0.553 Sum_probs=78.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
.......|||++||..+++.++.+++..||.+..+.++.+..+ .++||||.+|.+......|+..|||+.+++++|.|+
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 3455679999999999999999999999999999999998876 899999999999999999999999999999999999
Q ss_pred EeecCCC
Q 023648 114 EVATRGR 120 (279)
Q Consensus 114 ~a~~~~~ 120 (279)
.|.....
T Consensus 365 ~A~~g~~ 371 (500)
T KOG0120|consen 365 RAIVGAS 371 (500)
T ss_pred hhhccch
Confidence 8866544
No 89
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.40 E-value=2.5e-07 Score=79.62 Aligned_cols=78 Identities=31% Similarity=0.657 Sum_probs=71.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
....||+|-|.-+++.+.|-..|.+|-.....+++.++.+ +++||+||.|.+..++..|+..|+|..++.++|++.-+
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 3578999999999999999999999988888899999877 99999999999999999999999999999999987544
No 90
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.31 E-value=5.3e-07 Score=76.37 Aligned_cols=67 Identities=22% Similarity=0.432 Sum_probs=56.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEEC
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~ 106 (279)
..+.||||.||..+++|++|+.+|+.|--...++|... . ..+.|||+|++.+.|..|+..|+|..|.
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-~--g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-G--GMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-C--CcceEeecHHHHHHHHHHHHHhhcceec
Confidence 44679999999999999999999999987777766432 2 4569999999999999999999998763
No 91
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.28 E-value=6.3e-07 Score=80.73 Aligned_cols=84 Identities=27% Similarity=0.406 Sum_probs=74.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEE--------EEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEEC
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVV--------AVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~--------~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~ 106 (279)
.....+|||.+||..+++++|.++|.++|.|. .|+|-+++.| ..|+-|.|.|.+...|+.||.-++++.|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34456999999999999999999999999985 3667778777 89999999999999999999999999999
Q ss_pred CeEEEEEEeecCC
Q 023648 107 GRVVRVSEVATRG 119 (279)
Q Consensus 107 gr~i~V~~a~~~~ 119 (279)
+.+|+|.+|..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999886554
No 92
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.24 E-value=3.8e-06 Score=60.70 Aligned_cols=69 Identities=29% Similarity=0.403 Sum_probs=48.2
Q ss_pred CeEEEcCCCCCCcHHH----HHHHhccCC-CEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 40 SSVYVGGLPYSANEDS----VRKVFDKYG-SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~----L~~~F~~~G-~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
+.|||.|||.+.+... |++++..|| .|..| ..+.|+|.|.+.+.|..|++.|+|-.+-|.+|.|.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 4799999999988765 667777876 45554 346899999999999999999999999999999998
Q ss_pred eec
Q 023648 115 VAT 117 (279)
Q Consensus 115 a~~ 117 (279)
...
T Consensus 74 ~~~ 76 (90)
T PF11608_consen 74 SPK 76 (90)
T ss_dssp S--
T ss_pred cCC
Confidence 743
No 93
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.18 E-value=5.7e-06 Score=77.31 Aligned_cols=77 Identities=21% Similarity=0.366 Sum_probs=64.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEee
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~ 116 (279)
.....|-+.+|||++|+++|.+||+.++ |+.+.+... .++..|-|||+|.+++++++||+ ++-..+..+-|.|-.+.
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~-~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR-NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc-CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 3455677789999999999999999995 777655542 35789999999999999999999 58888888999987663
No 94
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.17 E-value=6.4e-06 Score=70.01 Aligned_cols=78 Identities=13% Similarity=0.324 Sum_probs=69.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEEC-CeEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID-GRVVRVS 113 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~-gr~i~V~ 113 (279)
...+..+||+.|||.+++.+.|..+|.+|.-...|.++.. ..+.|||+|.+...|..|...|++..|- ...|.|.
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC----CCceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 3566779999999999999999999999999999999876 4679999999999999999999999987 7888887
Q ss_pred Eee
Q 023648 114 EVA 116 (279)
Q Consensus 114 ~a~ 116 (279)
++.
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 764
No 95
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.16 E-value=2.5e-06 Score=76.65 Aligned_cols=86 Identities=27% Similarity=0.509 Sum_probs=76.1
Q ss_pred CCCCCCeEE-EcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 35 TIDDESSVY-VGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 35 ~~~~~~~l~-V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
...+..++| |++|+..++.++|+.+|..+|.|..+.+..+..+ ..+|||||.|.....+..|+.. +...|.+.+|.|
T Consensus 180 ~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 258 (285)
T KOG4210|consen 180 SSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRL 258 (285)
T ss_pred ccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccc
Confidence 344556666 9999999999999999999999999999988777 8999999999999999999997 889999999999
Q ss_pred EEeecCCCC
Q 023648 113 SEVATRGRK 121 (279)
Q Consensus 113 ~~a~~~~~~ 121 (279)
++..+.+..
T Consensus 259 ~~~~~~~~~ 267 (285)
T KOG4210|consen 259 EEDEPRPKS 267 (285)
T ss_pred ccCCCCccc
Confidence 988776553
No 96
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.11 E-value=5.7e-06 Score=78.19 Aligned_cols=60 Identities=18% Similarity=0.283 Sum_probs=52.3
Q ss_pred HHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 54 DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 54 ~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
+++.+.+.+||.|..|.|..+ +.|++||.|++.+.|..|+.+|||.+|.|+.|++.|-..
T Consensus 468 edV~Eec~k~g~v~hi~vd~n----s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 468 EDVIEECGKHGKVCHIFVDKN----SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPL 527 (549)
T ss_pred HHHHHHHHhcCCeeEEEEccC----CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeeh
Confidence 455666699999999988665 459999999999999999999999999999999987754
No 97
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.05 E-value=1e-05 Score=76.98 Aligned_cols=62 Identities=27% Similarity=0.414 Sum_probs=52.7
Q ss_pred HHHHhccCCCEEEEEEeeC-CCC---CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 56 VRKVFDKYGSVVAVKIVND-RST---RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 56 L~~~F~~~G~I~~v~i~~d-~~~---~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
|+..+.+||.|..|.|... ... -..|.+||+|.+.++|+.|+++|+|.+|.+++|...|.-.
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 4455689999999999876 322 4678999999999999999999999999999999887644
No 98
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.04 E-value=1.1e-05 Score=75.48 Aligned_cols=77 Identities=25% Similarity=0.362 Sum_probs=66.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEE-EEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVA-VKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~-v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
....|-+.+||+.+++++|.+||+..-.|.. |.++.+....+.|-|||+|++.+.|++||.. +...|+-+-|.|..+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 4567888999999999999999998755554 6677777778999999999999999999994 778889899988765
No 99
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.04 E-value=7.1e-06 Score=62.78 Aligned_cols=71 Identities=21% Similarity=0.446 Sum_probs=44.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCC-----cEECCeEEEEE
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNG-----RTIDGRVVRVS 113 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g-----~~i~gr~i~V~ 113 (279)
++.|+|.+++..++.++|+++|..||.|..|.+... -..|||-|.+.+.|+.|+.++.- ..|.+..+.++
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 357889999999999999999999999999988653 33899999999999999987643 35666666665
Q ss_pred E
Q 023648 114 E 114 (279)
Q Consensus 114 ~ 114 (279)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 4
No 100
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=1.9e-05 Score=74.89 Aligned_cols=88 Identities=30% Similarity=0.407 Sum_probs=69.4
Q ss_pred hhhHhhhcCCCCCCCeEEEcCCCCCCc--H----HHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHh
Q 023648 26 NLIEERVKMTIDDESSVYVGGLPYSAN--E----DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIND 99 (279)
Q Consensus 26 ~~~~~~~~~~~~~~~~l~V~nLp~~~t--e----~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~ 99 (279)
....+.+.....-...|+|.|+|---. . .-|..+|+++|+|+.+.++.+..+..+||+|++|.+..+|+.|++.
T Consensus 45 Dll~k~p~~~eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~ 124 (698)
T KOG2314|consen 45 DLLEKRPVTAEGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKS 124 (698)
T ss_pred HHHhhCcCccCCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHh
Confidence 334444444445567899999986432 2 2367889999999999999888888999999999999999999999
Q ss_pred cCCcEEC-CeEEEEE
Q 023648 100 MNGRTID-GRVVRVS 113 (279)
Q Consensus 100 l~g~~i~-gr~i~V~ 113 (279)
|||+.|+ .+++.|.
T Consensus 125 l~G~~ldknHtf~v~ 139 (698)
T KOG2314|consen 125 LNGKRLDKNHTFFVR 139 (698)
T ss_pred cccceecccceEEee
Confidence 9999886 5566665
No 101
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.91 E-value=1.3e-06 Score=79.29 Aligned_cols=64 Identities=17% Similarity=0.144 Sum_probs=53.3
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECC
Q 023648 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~g 107 (279)
.+|+|++|+..+...+|.++|..+|.|....+.-.. ...+|-|+|........||. ++|..+.-
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~---~s~~c~~sf~~qts~~halr-~~gre~k~ 215 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTASKS---RSSSCSHSFRKQTSSKHALR-SHGRERKR 215 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccC---CCcchhhhHhhhhhHHHHHH-hcchhhhh
Confidence 579999999999999999999999999887775322 34478899999999999998 67777663
No 102
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.87 E-value=2.9e-05 Score=69.59 Aligned_cols=78 Identities=23% Similarity=0.486 Sum_probs=60.7
Q ss_pred CeEEEcCCCCCCcHHH----H--HHHhccCCCEEEEEEeeCCCC--CCce--EEEEEEcChHHHHHHHHhcCCcEECCeE
Q 023648 40 SSVYVGGLPYSANEDS----V--RKVFDKYGSVVAVKIVNDRST--RGKC--YGFVTFGNPRSAVDAINDMNGRTIDGRV 109 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~----L--~~~F~~~G~I~~v~i~~d~~~--~~~g--~afV~f~~~~~A~~Al~~l~g~~i~gr~ 109 (279)
.-+||-+||+.+-.++ | .++|.+||.|..|.|...... ...+ -+||+|.+.++|..||...+|..++|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 4689999998864443 3 589999999999877543211 1222 2499999999999999999999999999
Q ss_pred EEEEEeec
Q 023648 110 VRVSEVAT 117 (279)
Q Consensus 110 i~V~~a~~ 117 (279)
|+..+-+.
T Consensus 195 lkatYGTT 202 (480)
T COG5175 195 LKATYGTT 202 (480)
T ss_pred EeeecCch
Confidence 99987643
No 103
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00014 Score=68.61 Aligned_cols=68 Identities=31% Similarity=0.498 Sum_probs=61.6
Q ss_pred hcCCCCCCCeEEEcCCCCCCcHHHHHHHhc-cCCCEEEEEEeeC-CCCCCceEEEEEEcChHHHHHHHHh
Q 023648 32 VKMTIDDESSVYVGGLPYSANEDSVRKVFD-KYGSVVAVKIVND-RSTRGKCYGFVTFGNPRSAVDAIND 99 (279)
Q Consensus 32 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d-~~~~~~g~afV~f~~~~~A~~Al~~ 99 (279)
.....++..|||||+||.-++.++|..+|+ .||-|..+-|-.| +...++|-|=|+|.+...-.+||.+
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 567788999999999999999999999999 6999999999888 4557999999999999999999974
No 104
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.66 E-value=0.0001 Score=49.10 Aligned_cols=52 Identities=19% Similarity=0.448 Sum_probs=42.0
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHH
Q 023648 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAI 97 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al 97 (279)
+.|-|.+++....+. |..+|..||+|+.+.+.. ...+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~-----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE-----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC-----CCcEEEEEECCHHHHHhhC
Confidence 467888988776644 555888999999988862 2459999999999999995
No 105
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.66 E-value=0.00015 Score=65.28 Aligned_cols=76 Identities=24% Similarity=0.332 Sum_probs=61.0
Q ss_pred CCCeEEEcCCC--C--CCc-------HHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEEC
Q 023648 38 DESSVYVGGLP--Y--SAN-------EDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (279)
Q Consensus 38 ~~~~l~V~nLp--~--~~t-------e~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~ 106 (279)
...+|.|.||= . ..+ +++|.+...+||.|..|.|... ++.|.+-|.|.+.++|..||+.|+|..|+
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~fd 340 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWFD 340 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeeec
Confidence 35688888872 1 223 2456667899999999988643 37899999999999999999999999999
Q ss_pred CeEEEEEEee
Q 023648 107 GRVVRVSEVA 116 (279)
Q Consensus 107 gr~i~V~~a~ 116 (279)
|+.|..+..-
T Consensus 341 gRql~A~i~D 350 (382)
T KOG1548|consen 341 GRQLTASIWD 350 (382)
T ss_pred ceEEEEEEeC
Confidence 9999887653
No 106
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.64 E-value=2.7e-05 Score=67.39 Aligned_cols=72 Identities=24% Similarity=0.386 Sum_probs=60.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC---------C--Cce--EEEEEEcChHHHHHHHHhcCCcE
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST---------R--GKC--YGFVTFGNPRSAVDAINDMNGRT 104 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~---------~--~~g--~afV~f~~~~~A~~Al~~l~g~~ 104 (279)
....||+++||+.++..-|+++|..||.|-.|.|...... . ..- -++|+|.....|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4579999999999999999999999999999888654322 1 111 37999999999999999999999
Q ss_pred ECCeE
Q 023648 105 IDGRV 109 (279)
Q Consensus 105 i~gr~ 109 (279)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 107
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.64 E-value=0.0003 Score=56.47 Aligned_cols=75 Identities=28% Similarity=0.456 Sum_probs=53.0
Q ss_pred CCCCCeEEEcCCC-----C-CCcH---HHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEEC
Q 023648 36 IDDESSVYVGGLP-----Y-SANE---DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (279)
Q Consensus 36 ~~~~~~l~V~nLp-----~-~~te---~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~ 106 (279)
.++..||.|.-+. . .+.+ .+|.+.|..||+|.-|+++.+ .-+|+|.+-..|.+||. |+|..|+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals-~dg~~v~ 95 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALS-LDGIQVN 95 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHH-GCCSEET
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHc-cCCcEEC
Confidence 3455677775444 1 2232 367788999999998888754 57999999999999999 8999999
Q ss_pred CeEEEEEEeecC
Q 023648 107 GRVVRVSEVATR 118 (279)
Q Consensus 107 gr~i~V~~a~~~ 118 (279)
|+.|+|....+.
T Consensus 96 g~~l~i~LKtpd 107 (146)
T PF08952_consen 96 GRTLKIRLKTPD 107 (146)
T ss_dssp TEEEEEEE----
T ss_pred CEEEEEEeCCcc
Confidence 999999877654
No 108
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.60 E-value=0.00024 Score=69.10 Aligned_cols=77 Identities=18% Similarity=0.321 Sum_probs=68.4
Q ss_pred CCC-eEEEcCCCCCCcHHHHHHHhccCCCEE-EEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 38 DES-SVYVGGLPYSANEDSVRKVFDKYGSVV-AVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 38 ~~~-~l~V~nLp~~~te~~L~~~F~~~G~I~-~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
+++ .|-|-|+|+.++-++|.+||..|-.+- .|.|..+..++..|-|.|.|++.++|..|...|+++.|..++|.|.+
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 344 778899999999999999999997764 67777777789999999999999999999999999999999998864
No 109
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.57 E-value=0.00042 Score=52.41 Aligned_cols=75 Identities=27% Similarity=0.435 Sum_probs=50.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEE-EeeC-------CCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEE
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVK-IVND-------RSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~-i~~d-------~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i 110 (279)
.+.|.|-++|+. ....|..+|++||.|.... +..+ .......+..|.|.+..+|.+||. .||..|.|..|
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 456888899988 4566788999999998764 1000 011245589999999999999999 59999998654
Q ss_pred -EEEEe
Q 023648 111 -RVSEV 115 (279)
Q Consensus 111 -~V~~a 115 (279)
-|.+.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 45554
No 110
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.0003 Score=66.45 Aligned_cols=61 Identities=30% Similarity=0.540 Sum_probs=48.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEe--eCCCC--CCce---EEEEEEcChHHHHHHHHhc
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIV--NDRST--RGKC---YGFVTFGNPRSAVDAINDM 100 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~--~d~~~--~~~g---~afV~f~~~~~A~~Al~~l 100 (279)
...||||+||+.++|+.|...|..||.|. |..+ .+... .++| |+|+.|+++..+...|.++
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 46899999999999999999999999875 2333 11112 4677 9999999999888877654
No 111
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.56 E-value=0.00034 Score=63.63 Aligned_cols=81 Identities=21% Similarity=0.226 Sum_probs=71.1
Q ss_pred CCCCCCCeEEEcCCCCC-CcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 34 MTIDDESSVYVGGLPYS-ANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 34 ~~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
....++..+.|-+|... ++-+.|..+|..||.|..|++++. ..|-|.|++.+..+.+.|+..||+..+-|.+|.|
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT----k~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT----KPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec----ccceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 44567789999999876 577889999999999999999876 3578999999999999999999999999999999
Q ss_pred EEeecC
Q 023648 113 SEVATR 118 (279)
Q Consensus 113 ~~a~~~ 118 (279)
.+++..
T Consensus 358 ~~SkQ~ 363 (494)
T KOG1456|consen 358 CVSKQN 363 (494)
T ss_pred eecccc
Confidence 888654
No 112
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.56 E-value=8.7e-05 Score=67.63 Aligned_cols=77 Identities=19% Similarity=0.359 Sum_probs=67.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCC-EE--EEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGS-VV--AVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~-I~--~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
...|-+.+||+.++.++|..||..|.. |. .|+|+.|..+++.|-|||+|.+.+.|..|..+.+.+....+.|.|-.+
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 457889999999999999999998865 33 389999999999999999999999999999998888888888888644
No 113
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.56 E-value=8.7e-05 Score=68.46 Aligned_cols=67 Identities=18% Similarity=0.273 Sum_probs=56.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeC---CCC----C-------CceEEEEEEcChHHHHHHHHhcC
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVND---RST----R-------GKCYGFVTFGNPRSAVDAINDMN 101 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d---~~~----~-------~~g~afV~f~~~~~A~~Al~~l~ 101 (279)
..+..+|.+.|||.+-.-+.|.+||+.||.|+.|.||.. ... . .+-+|||+|.+.+.|.+|.+.|+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 346789999999999888999999999999999999976 211 1 25589999999999999999875
Q ss_pred C
Q 023648 102 G 102 (279)
Q Consensus 102 g 102 (279)
.
T Consensus 308 ~ 308 (484)
T KOG1855|consen 308 P 308 (484)
T ss_pred h
Confidence 4
No 114
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.46 E-value=0.00038 Score=61.48 Aligned_cols=63 Identities=35% Similarity=0.444 Sum_probs=52.4
Q ss_pred HHHHHHhccCCCEEEEEEeeCCCC--CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEee
Q 023648 54 DSVRKVFDKYGSVVAVKIVNDRST--RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (279)
Q Consensus 54 ~~L~~~F~~~G~I~~v~i~~d~~~--~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~ 116 (279)
.++.+.+++||.|..|.|.....- +-.--.||+|+..++|.+|+-.|||..|+|+.+...|..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 467888999999999888765433 334467999999999999999999999999999887654
No 115
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.46 E-value=0.00019 Score=71.59 Aligned_cols=78 Identities=23% Similarity=0.480 Sum_probs=68.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECC--eEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG--RVVRV 112 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~g--r~i~V 112 (279)
...+.+.|||++|+..+....|..+|..||+|..|.+-. ..-||||+|++...|+.|+..|-|..|++ +.|.|
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h-----gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH-----GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc-----CCcceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 345678999999999999999999999999999987743 45699999999999999999999999985 67888
Q ss_pred EEeec
Q 023648 113 SEVAT 117 (279)
Q Consensus 113 ~~a~~ 117 (279)
.++..
T Consensus 526 dla~~ 530 (975)
T KOG0112|consen 526 DLASP 530 (975)
T ss_pred ccccC
Confidence 88854
No 116
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.39 E-value=0.0011 Score=60.41 Aligned_cols=79 Identities=18% Similarity=0.256 Sum_probs=63.7
Q ss_pred CCCCeEEEcCC--CCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEEC-C-eEEEE
Q 023648 37 DDESSVYVGGL--PYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID-G-RVVRV 112 (279)
Q Consensus 37 ~~~~~l~V~nL--p~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~-g-r~i~V 112 (279)
.+...|.+.=| -+.+|.+-|..+....|+|..|.|... .---|.|||++.+.|++|..+|||..|. | .+|+|
T Consensus 118 ~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk----ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 118 TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK----NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred CCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec----cceeeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 33445555544 456899999999999999999988764 3347999999999999999999999875 3 58999
Q ss_pred EEeecCC
Q 023648 113 SEVATRG 119 (279)
Q Consensus 113 ~~a~~~~ 119 (279)
++|++..
T Consensus 194 eyAkP~r 200 (494)
T KOG1456|consen 194 EYAKPTR 200 (494)
T ss_pred EecCcce
Confidence 9998754
No 117
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.38 E-value=0.0003 Score=64.31 Aligned_cols=74 Identities=16% Similarity=0.243 Sum_probs=61.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC----CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST----RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~----~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
...|.|.||.+.++.++|+.||.-.|.|..+.|..+... ...-.|||.|.+...+..|.. |.+++|-++.|.|-
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~ 84 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVR 84 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEE
Confidence 348999999999999999999999999999998765433 234589999999999888876 77777777777665
No 118
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.37 E-value=0.0001 Score=70.44 Aligned_cols=76 Identities=9% Similarity=0.123 Sum_probs=63.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhcc-CCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEE---CCeEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDK-YGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI---DGRVVR 111 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i---~gr~i~ 111 (279)
....+.|||.||-.-+|..+|+.++.+ +|.|+.++|- +.+..|||.|.+.++|.+.+.+|||..+ +.+.|.
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD-----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD-----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHH-----HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 345679999999999999999999994 6666666432 2567899999999999999999999976 578898
Q ss_pred EEEee
Q 023648 112 VSEVA 116 (279)
Q Consensus 112 V~~a~ 116 (279)
|.|..
T Consensus 516 adf~~ 520 (718)
T KOG2416|consen 516 ADFVR 520 (718)
T ss_pred eeecc
Confidence 88874
No 119
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.36 E-value=0.00048 Score=63.36 Aligned_cols=79 Identities=15% Similarity=0.278 Sum_probs=65.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCe-EEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGR-VVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr-~i~V~~ 114 (279)
..+..+|.+.|||..++|++|+.+|..-|..+....... +.+.+|++++++.++|..|+..|+.+.+++. .|+|.|
T Consensus 411 ~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~---kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 411 FPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ---KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC---CCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 466779999999999999999999998887654433322 1345999999999999999999999999866 889998
Q ss_pred eec
Q 023648 115 VAT 117 (279)
Q Consensus 115 a~~ 117 (279)
++.
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 864
No 120
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.32 E-value=0.0021 Score=53.33 Aligned_cols=62 Identities=21% Similarity=0.318 Sum_probs=56.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEEC
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~ 106 (279)
...|.|.+||...++++|++++.+-|.|....+..+ |++.|+|...++++-||.+|+...+.
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceeeeeeehhhHHHHHHhhcccccc
Confidence 468999999999999999999999999999888765 58999999999999999999887764
No 121
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.22 E-value=0.00022 Score=64.33 Aligned_cols=75 Identities=19% Similarity=0.376 Sum_probs=62.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCC--EEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGS--VVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~--I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
-..+|||||-|.+|.++|.+.+...|- |..+++..+... ++||||+|...+....++.++.|-.++|.|..-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 357999999999999999888877663 556666666655 899999999999999999999999999988755543
No 122
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.06 E-value=0.00023 Score=70.72 Aligned_cols=79 Identities=16% Similarity=0.259 Sum_probs=73.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
-..|||.|+|+..|.++|+.+|.++|.++.+.++..+.++++|.|||.|.++.+|..++..++...+....+.|..+.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 3479999999999999999999999999999999999999999999999999999999999999999888888887665
No 123
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.77 E-value=0.00036 Score=69.75 Aligned_cols=78 Identities=23% Similarity=0.367 Sum_probs=65.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
.....|||+|||+..+++.+|...|..||.|..|.|..........|+||.|.+...+..|+..|.+..|..-.+++-
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 344679999999999999999999999999999999776555556699999999999999999999888764444443
No 124
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.72 E-value=0.0016 Score=63.55 Aligned_cols=83 Identities=18% Similarity=0.164 Sum_probs=67.3
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEE-EEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVA-VKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 34 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~-v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
.....+..|||..||..+++.++.++|.+.-.|+. |.|..-..++..+.|||+|..++++..|+..-+.+.++.+.|.|
T Consensus 429 ~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv 508 (944)
T KOG4307|consen 429 FPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRV 508 (944)
T ss_pred CCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEe
Confidence 34455789999999999999999999998777776 66665555678899999999999999998866666677778888
Q ss_pred EEee
Q 023648 113 SEVA 116 (279)
Q Consensus 113 ~~a~ 116 (279)
.-..
T Consensus 509 ~si~ 512 (944)
T KOG4307|consen 509 DSIA 512 (944)
T ss_pred echh
Confidence 7543
No 125
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.50 E-value=0.016 Score=41.98 Aligned_cols=55 Identities=20% Similarity=0.363 Sum_probs=41.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcC
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~ 101 (279)
...+||+ +|.++...+|.++|..||.|.--.| .+ .-|||.....+.|..|+..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi-~d------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI-ND------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEE-CT------TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEE-cC------CcEEEEeecHHHHHHHHHHhc
Confidence 3466676 9999999999999999999874444 33 379999999999999998775
No 126
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.45 E-value=0.0031 Score=54.85 Aligned_cols=74 Identities=24% Similarity=0.333 Sum_probs=61.8
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCc----EECCeEEEEE
Q 023648 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGR----TIDGRVVRVS 113 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~----~i~gr~i~V~ 113 (279)
..|||.||+.-+.-+.|...|..||+|....++.|...++.+-++|+|...-.|.+|+..+.-. ++.+.++.|+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 6899999999999999999999999999877777777788889999999999999999877322 3345555554
No 127
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.45 E-value=0.0021 Score=59.45 Aligned_cols=73 Identities=19% Similarity=0.362 Sum_probs=58.3
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccC--CCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCc-EECCeEEEEEEee
Q 023648 40 SSVYVGGLPYSANEDSVRKVFDKY--GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGR-TIDGRVVRVSEVA 116 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~-~i~gr~i~V~~a~ 116 (279)
..|||+||.+.++..+|..+|... +--..+-| ..||+||.+.+...|.+|++.|+|+ .+.|+++.|+.+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 379999999999999999999754 11112222 3579999999999999999999987 5789999999886
Q ss_pred cCC
Q 023648 117 TRG 119 (279)
Q Consensus 117 ~~~ 119 (279)
++.
T Consensus 75 ~kk 77 (584)
T KOG2193|consen 75 PKK 77 (584)
T ss_pred hHH
Confidence 543
No 128
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.40 E-value=0.00035 Score=69.49 Aligned_cols=74 Identities=20% Similarity=0.279 Sum_probs=61.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
..++||.||+..+.+.+|...|..+|.|..+.|...... ..+|+|||+|...+.+.+||....+.+++-..|.|
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i 741 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAI 741 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhe
Confidence 358999999999999999999999999988777633333 68899999999999999999987777766433333
No 129
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.39 E-value=0.013 Score=52.09 Aligned_cols=64 Identities=27% Similarity=0.372 Sum_probs=49.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEE
Q 023648 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i 110 (279)
+=|-|-++|+.- ...|..+|++||.|+...... .-.+-+|.|....+|++||. .+|+.|+|..|
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~-----ngNwMhirYssr~~A~KALs-kng~ii~g~vm 261 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPS-----NGNWMHIRYSSRTHAQKALS-KNGTIIDGDVM 261 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeecCC-----CCceEEEEecchhHHHHhhh-hcCeeeccceE
Confidence 345555777654 356778999999998865542 24488999999999999999 59999998754
No 130
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.39 E-value=0.016 Score=39.76 Aligned_cols=55 Identities=18% Similarity=0.370 Sum_probs=44.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccC---CCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhc
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKY---GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM 100 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~---G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l 100 (279)
...|+|.|+. +++.++|+.+|..| .....|.++.|. -|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 4589999985 57778999999988 234578888774 5789999999999999865
No 131
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.38 E-value=0.001 Score=59.97 Aligned_cols=78 Identities=31% Similarity=0.541 Sum_probs=61.8
Q ss_pred CeEEEcCCCCCC-cHHHHH--HHhccCCCEEEEEEeeCCC--C--CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 40 SSVYVGGLPYSA-NEDSVR--KVFDKYGSVVAVKIVNDRS--T--RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 40 ~~l~V~nLp~~~-te~~L~--~~F~~~G~I~~v~i~~d~~--~--~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
.-+||-+|+..+ .+..|+ +.|.+||.|..|.+..+.. . ...+-+||+|...++|..||...+|..+.|+.|++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 457888888775 455554 6799999999998877652 1 23445899999999999999999999999999887
Q ss_pred EEeec
Q 023648 113 SEVAT 117 (279)
Q Consensus 113 ~~a~~ 117 (279)
.+...
T Consensus 158 ~~gtt 162 (327)
T KOG2068|consen 158 SLGTT 162 (327)
T ss_pred hhCCC
Confidence 76644
No 132
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.24 E-value=0.021 Score=45.61 Aligned_cols=72 Identities=19% Similarity=0.240 Sum_probs=53.5
Q ss_pred CCCCeEEEcCCCCCCc----HHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 37 DDESSVYVGGLPYSAN----EDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~t----e~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
.+-.||.|.=|..++. ...|...++.||+|..|.++- +.-|.|.|.+..+|-.|+.+++. ...|..+.+
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 4456888876666653 234556678999999999874 45899999999999999999876 555666666
Q ss_pred EEe
Q 023648 113 SEV 115 (279)
Q Consensus 113 ~~a 115 (279)
.|-
T Consensus 157 sWq 159 (166)
T PF15023_consen 157 SWQ 159 (166)
T ss_pred ecc
Confidence 543
No 133
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.21 E-value=0.0033 Score=61.17 Aligned_cols=74 Identities=19% Similarity=0.280 Sum_probs=64.5
Q ss_pred cCCCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 33 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
.....+..+|||+||...+..+-+..++..+|.|..+..+. |+|..|.....+..|+..|.-..++|..|.+
T Consensus 34 ~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 34 FQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred ccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 34556778999999999999999999999999998877654 9999999999999999999999999888776
Q ss_pred EE
Q 023648 113 SE 114 (279)
Q Consensus 113 ~~ 114 (279)
..
T Consensus 106 ~~ 107 (668)
T KOG2253|consen 106 NV 107 (668)
T ss_pred cc
Confidence 54
No 134
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.21 E-value=0.015 Score=53.31 Aligned_cols=71 Identities=25% Similarity=0.332 Sum_probs=55.3
Q ss_pred eEEEcCCCCCCcHHHHHHHhccC----CCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 41 SVYVGGLPYSANEDSVRKVFDKY----GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 41 ~l~V~nLp~~~te~~L~~~F~~~----G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
.|-+.+||+++++.++.+||..- |-++.|-++....++..|-|||.|..+++|+.||.+ |...|+-+-|.+
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 45567999999999999999732 344566666666778999999999999999999985 555666555544
No 135
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.12 E-value=0.024 Score=40.31 Aligned_cols=67 Identities=18% Similarity=0.390 Sum_probs=40.9
Q ss_pred eEEEc-CCCCCCcHHHHHHHhccCCC-----EEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 41 SVYVG-GLPYSANEDSVRKVFDKYGS-----VVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 41 ~l~V~-nLp~~~te~~L~~~F~~~G~-----I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
+|||. +--..++..+|..+|...+. |-.|.|..+ |+||+-.. +.|..++..|++..+.|++|.|+.
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--SSS----EEE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEE
Confidence 56662 22346888999988877654 557778554 99999885 588999999999999999999987
Q ss_pred e
Q 023648 115 V 115 (279)
Q Consensus 115 a 115 (279)
|
T Consensus 74 A 74 (74)
T PF03880_consen 74 A 74 (74)
T ss_dssp -
T ss_pred C
Confidence 5
No 136
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.68 E-value=0.026 Score=47.21 Aligned_cols=80 Identities=11% Similarity=0.157 Sum_probs=51.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhcc-CCCE---EEEEEeeCCCC---CCceEEEEEEcChHHHHHHHHhcCCcEECC---
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDK-YGSV---VAVKIVNDRST---RGKCYGFVTFGNPRSAVDAINDMNGRTIDG--- 107 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~I---~~v~i~~d~~~---~~~g~afV~f~~~~~A~~Al~~l~g~~i~g--- 107 (279)
....|.|.+||+.+|++++.+.+.. ++.. ..+.-...... ..-.-|||.|.+.+++...+..++|..|-+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4569999999999999999887776 6665 34432222222 234579999999999999999999987632
Q ss_pred --eEEEEEEeec
Q 023648 108 --RVVRVSEVAT 117 (279)
Q Consensus 108 --r~i~V~~a~~ 117 (279)
.+..|++|.-
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 3456676644
No 137
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.23 E-value=0.011 Score=55.49 Aligned_cols=71 Identities=14% Similarity=0.272 Sum_probs=57.3
Q ss_pred eEEEcCCCCCC-cHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 41 SVYVGGLPYSA-NEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 41 ~l~V~nLp~~~-te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
.|-+.-+|+.+ +-.+|..+|.+||.|..|.|-.. .--|.|+|.+..+|-.|.. .++..|+++.|+|.|-.+
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 34444445554 56789999999999999988653 3368999999999988876 689999999999999876
No 138
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.16 E-value=0.074 Score=44.77 Aligned_cols=62 Identities=23% Similarity=0.270 Sum_probs=45.9
Q ss_pred cHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcC--CcEECCeEEEEEEeecC
Q 023648 52 NEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN--GRTIDGRVVRVSEVATR 118 (279)
Q Consensus 52 te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~--g~~i~gr~i~V~~a~~~ 118 (279)
....|+.+|..|+.+..+.+... -+=..|.|.+.+.|..|...|+ +..|.|..|+|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999999888776653 3468899999999999999999 99999999999988543
No 139
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=94.71 E-value=0.6 Score=46.79 Aligned_cols=69 Identities=6% Similarity=0.104 Sum_probs=51.4
Q ss_pred eEEEc-CCCCCCcHHHHHHHhccCCCEE-----EEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 41 SVYVG-GLPYSANEDSVRKVFDKYGSVV-----AVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 41 ~l~V~-nLp~~~te~~L~~~F~~~G~I~-----~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
++||. +--..++..+|..++..-+.|. .|.|..+ |.||+... ..|...+..|++..|.|+.|.|+.
T Consensus 488 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~-------~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 559 (629)
T PRK11634 488 LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS-------HSTIELPK-GMPGEVLQHFTRTRILNKPMNMQL 559 (629)
T ss_pred EEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC-------ceEEEcCh-hhHHHHHHHhccccccCCceEEEE
Confidence 45552 2245688888888887665543 4666443 88999875 568889999999999999999998
Q ss_pred eec
Q 023648 115 VAT 117 (279)
Q Consensus 115 a~~ 117 (279)
+..
T Consensus 560 ~~~ 562 (629)
T PRK11634 560 LGD 562 (629)
T ss_pred CCC
Confidence 753
No 140
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.39 E-value=0.38 Score=37.01 Aligned_cols=67 Identities=15% Similarity=0.302 Sum_probs=49.7
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCC-CEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECC
Q 023648 40 SSVYVGGLPYSANEDSVRKVFDKYG-SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~g 107 (279)
..+.+...|+.++..+|..+.+.+- .|..++|+.+.. ..+-.+.|.|.+.+.|......+||+.|+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~-pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT-PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC-CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444555566666677776666654 467888887633 355679999999999999999999998864
No 141
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=94.39 E-value=0.073 Score=51.13 Aligned_cols=84 Identities=12% Similarity=0.256 Sum_probs=58.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhcc-CCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEE----CCeEE
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDK-YGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTI----DGRVV 110 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i----~gr~i 110 (279)
.+-+++-|.|+|-..|...|...-++ .|.-..+.++.|-.. ...|||||.|.+.+.+..+.++++|+.+ ..+.+
T Consensus 386 ~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia 465 (549)
T KOG4660|consen 386 CPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIA 465 (549)
T ss_pred CchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeee
Confidence 34456666666665555554443332 566666777776555 6889999999999999999999999854 34566
Q ss_pred EEEEeecCCC
Q 023648 111 RVSEVATRGR 120 (279)
Q Consensus 111 ~V~~a~~~~~ 120 (279)
.|.||.-++.
T Consensus 466 ~itYArIQGk 475 (549)
T KOG4660|consen 466 SITYARIQGK 475 (549)
T ss_pred eeehhhhhch
Confidence 7777755443
No 142
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.95 E-value=0.043 Score=55.11 Aligned_cols=75 Identities=23% Similarity=0.302 Sum_probs=61.7
Q ss_pred eEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEE--CCeEEEEEEeecC
Q 023648 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI--DGRVVRVSEVATR 118 (279)
Q Consensus 41 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i--~gr~i~V~~a~~~ 118 (279)
+.++-|++-.++-..|..+|.+||.|..++...+. ..|.|+|...+.|..|+.+|+|+.+ -|.+.+|.+|+.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~-----N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL-----NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc-----cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 44455556667778899999999999999887753 3799999999999999999999875 5888999999765
Q ss_pred CC
Q 023648 119 GR 120 (279)
Q Consensus 119 ~~ 120 (279)
..
T Consensus 375 ~~ 376 (1007)
T KOG4574|consen 375 PM 376 (1007)
T ss_pred cc
Confidence 44
No 143
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=92.70 E-value=0.049 Score=49.08 Aligned_cols=82 Identities=18% Similarity=0.203 Sum_probs=64.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEee
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~ 116 (279)
..+++||+++.+.+.+.++..+|..+|.+..+.+...... ..+++++|.|...+.+..||.......+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 4678999999999999988999999998877666554333 688999999999999999999554457777766655554
Q ss_pred cCC
Q 023648 117 TRG 119 (279)
Q Consensus 117 ~~~ 119 (279)
..+
T Consensus 167 ~~~ 169 (285)
T KOG4210|consen 167 RRG 169 (285)
T ss_pred ccc
Confidence 433
No 144
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.34 E-value=0.89 Score=31.61 Aligned_cols=56 Identities=16% Similarity=0.253 Sum_probs=44.2
Q ss_pred CCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 50 SANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 50 ~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
.++..+|+..|.+|+-. . |..++ .| -||.|.+..+|+++....+|+.+.+..|.++
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~--I~~d~----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M~ 66 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-R--IRDDR----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQME 66 (66)
T ss_pred CccHHHHHHHHhcCCcc-e--EEecC----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEeC
Confidence 46889999999999753 2 33342 33 4899999999999999999999988887653
No 145
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.24 E-value=0.23 Score=47.91 Aligned_cols=67 Identities=16% Similarity=0.330 Sum_probs=51.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhcc--CCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCC--cEECCeEEE
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDK--YGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNG--RTIDGRVVR 111 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~--~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g--~~i~gr~i~ 111 (279)
-+.|+|.-||..+-.++|+.||.. |-++..|.+..+. .=||+|++..+|+.|.+.|.. ++|-|++|.
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 356788899999999999999975 6677777776542 469999999999999887643 345555553
No 146
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.11 E-value=0.41 Score=45.12 Aligned_cols=68 Identities=12% Similarity=0.283 Sum_probs=57.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCC-CEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECC
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYG-SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~g 107 (279)
.+.|+|-.+|..++..+|..|+..|- .|..|+|+.+... ..=.+.|.|.+.++|....+.+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78999999999999999999988754 5788999985332 34468999999999999999999998864
No 147
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.38 E-value=0.96 Score=43.96 Aligned_cols=79 Identities=15% Similarity=0.297 Sum_probs=59.7
Q ss_pred CCCCCCeEEEcCCCCC-CcHHHHHHHhccC----CCEEEEEEeeCCCC---------C-C--------------------
Q 023648 35 TIDDESSVYVGGLPYS-ANEDSVRKVFDKY----GSVVAVKIVNDRST---------R-G-------------------- 79 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~I~~v~i~~d~~~---------~-~-------------------- 79 (279)
....+..|-|.||.|. +...+|.-+|..| |.|..|.|+....+ + +
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 3566789999999997 6889999888765 58888877643211 0 1
Q ss_pred -----------------c-eEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 80 -----------------K-CYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 80 -----------------~-g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
+ =||.|+|.+.+.|.+.+..++|..|...-+.+.
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~D 301 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLD 301 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceee
Confidence 1 179999999999999999999999975444443
No 148
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=85.59 E-value=0.53 Score=39.19 Aligned_cols=77 Identities=10% Similarity=0.182 Sum_probs=56.7
Q ss_pred CCeEEEcCCCCCCcHH-----HHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCe-EEEE
Q 023648 39 ESSVYVGGLPYSANED-----SVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGR-VVRV 112 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~-----~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr-~i~V 112 (279)
.+++++++|+..+..+ ....+|.+|-+...+.++. +.++.-|.|.+.+.|..|...++...|.|. .|+.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 4578888888775322 3456667666665555544 456788899999999999999999999998 8888
Q ss_pred EEeecCCC
Q 023648 113 SEVATRGR 120 (279)
Q Consensus 113 ~~a~~~~~ 120 (279)
-++.+...
T Consensus 85 yfaQ~~~~ 92 (193)
T KOG4019|consen 85 YFAQPGHP 92 (193)
T ss_pred EEccCCCc
Confidence 77765433
No 149
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=80.04 E-value=4 Score=36.48 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=35.1
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCEE-EEEEeeCCCCCCceEEEEEEcCh
Q 023648 40 SSVYVGGLPYSANEDSVRKVFDKYGSVV-AVKIVNDRSTRGKCYGFVTFGNP 90 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~L~~~F~~~G~I~-~v~i~~d~~~~~~g~afV~f~~~ 90 (279)
+-|||+||+.++...+|+..+.+.|.+- .|.+.- +.|-||+.|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg-----~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG-----HFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeec-----CCcceeEecCCc
Confidence 5699999999999999999998877542 333322 456899999653
No 150
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.97 E-value=3.7 Score=38.39 Aligned_cols=55 Identities=18% Similarity=0.318 Sum_probs=45.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCE-EEEEEeeCCCCCCceEEEEEEcChHHHHHHHH
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSV-VAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIN 98 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I-~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~ 98 (279)
-.+.|-|-++|.....++|..+|+.|+.- -.|.++.+. .||..|.....|..||-
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT------HALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc------eeEEeecchHHHHHHhh
Confidence 45788999999999999999999999764 356666543 79999999999999987
No 151
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=79.55 E-value=0.71 Score=40.99 Aligned_cols=70 Identities=21% Similarity=0.463 Sum_probs=45.3
Q ss_pred CCCCCeEEEcCCCCC------------CcHHHHHHHhccCCCEEEEEEee-CC-----CC-----CCceE---------E
Q 023648 36 IDDESSVYVGGLPYS------------ANEDSVRKVFDKYGSVVAVKIVN-DR-----ST-----RGKCY---------G 83 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~------------~te~~L~~~F~~~G~I~~v~i~~-d~-----~~-----~~~g~---------a 83 (279)
...+-|||+.+||.. .++.-|...|+.||.|..|.|+. ++ .+ ...|| |
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffea 225 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEA 225 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHH
Confidence 445679999999853 24667999999999998877642 21 11 23333 3
Q ss_pred EEEEcChHHHHHHHHhcCCcEE
Q 023648 84 FVTFGNPRSAVDAINDMNGRTI 105 (279)
Q Consensus 84 fV~f~~~~~A~~Al~~l~g~~i 105 (279)
||+|........|+.+|.|..+
T Consensus 226 yvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 226 YVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHHhHHHHHHHHhcchH
Confidence 4556555556666766766543
No 152
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=78.43 E-value=0.12 Score=48.32 Aligned_cols=77 Identities=17% Similarity=0.337 Sum_probs=62.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
...+-|.|+|+...++.|..++..||.|..|..+.-. . -....-|+|...+.+..||.+|+|..+....++|.|..-
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~-~-etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTD-S-ETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccc-h-HHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 3468899999999999999999999999987664321 1 223456789999999999999999999999999887643
No 153
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=77.44 E-value=4.9 Score=36.10 Aligned_cols=78 Identities=14% Similarity=0.244 Sum_probs=57.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCC--------CCCCceEEEEEEcChHHHHHHHHh----cC--CcE
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR--------STRGKCYGFVTFGNPRSAVDAIND----MN--GRT 104 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~--------~~~~~g~afV~f~~~~~A~~Al~~----l~--g~~ 104 (279)
...|...||...++--.+...|.+||+|+.|.++.+. ..+......+.|-+.+.|...... |. .+.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 3467788999889888888999999999999999765 224556889999998887765432 21 134
Q ss_pred ECCeEEEEEEee
Q 023648 105 IDGRVVRVSEVA 116 (279)
Q Consensus 105 i~gr~i~V~~a~ 116 (279)
+....|.|.+..
T Consensus 95 L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSESLTLSFVS 106 (309)
T ss_pred cCCcceeEEEEE
Confidence 666777777665
No 154
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=76.66 E-value=0.69 Score=39.73 Aligned_cols=75 Identities=23% Similarity=0.400 Sum_probs=60.7
Q ss_pred CCCeEEEcC----CCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 38 DESSVYVGG----LPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 38 ~~~~l~V~n----Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
...+++.|+ |...++++.+..+|+.-|+|..+.+..+..+....+.|+.+.-....-.|+...++..+--+++.+
T Consensus 79 ~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~~ 157 (267)
T KOG4454|consen 79 EQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVTI 157 (267)
T ss_pred hhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCccc
Confidence 345788888 777789999999999999999999988877777889999999888888888877776655444443
No 155
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=69.82 E-value=5.4 Score=30.94 Aligned_cols=45 Identities=11% Similarity=0.269 Sum_probs=25.4
Q ss_pred cHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcCh-HHHHHHHH
Q 023648 52 NEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNP-RSAVDAIN 98 (279)
Q Consensus 52 te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~-~~A~~Al~ 98 (279)
+.+.|.+.|..|.+++ |..+.+.. ...|++.|+|... .-...|+.
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~~-gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGKQ-GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEETT-EEEEEEEEE--SSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCCC-CCcEEEEEEECCChHHHHHHHH
Confidence 4578999999999886 44445444 3678999999753 33344443
No 156
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=67.15 E-value=6.6 Score=33.27 Aligned_cols=65 Identities=20% Similarity=0.440 Sum_probs=45.1
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHH
Q 023648 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98 (279)
Q Consensus 34 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~ 98 (279)
........+++.+++..++...+..+|..+|.|..+.+...... ....+.++.+.....+..++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 220 LLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred ccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 34456779999999999999999999999999977766655433 233344444444444444444
No 157
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=66.97 E-value=13 Score=26.04 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=42.1
Q ss_pred HHHHHHhccCCC-EEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEee
Q 023648 54 DSVRKVFDKYGS-VVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (279)
Q Consensus 54 ~~L~~~F~~~G~-I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~ 116 (279)
.+|++.|.+.|- +..|..+.+..+ .+...-||+.....+... .|+-+.|++..|.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 357778888874 667777777665 455677888776554444 456678899999998554
No 158
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=64.15 E-value=18 Score=34.04 Aligned_cols=72 Identities=15% Similarity=0.279 Sum_probs=52.6
Q ss_pred CCCCCeEEEcCCCCC-CcHHHHHHHhccC----CCEEEEEEeeCCCC---------------------------------
Q 023648 36 IDDESSVYVGGLPYS-ANEDSVRKVFDKY----GSVVAVKIVNDRST--------------------------------- 77 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~I~~v~i~~d~~~--------------------------------- 77 (279)
.++...|-|-||.|. +...+|..+|+.| |.|..|.|+....+
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 566778999999986 6788998888765 56766665432110
Q ss_pred ----CC-----------------------------ceEEEEEEcChHHHHHHHHhcCCcEECC
Q 023648 78 ----RG-----------------------------KCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (279)
Q Consensus 78 ----~~-----------------------------~g~afV~f~~~~~A~~Al~~l~g~~i~g 107 (279)
.- -=||.|+|.+.+.+...+..++|..+..
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~ 285 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYEN 285 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCcccccc
Confidence 00 1278899999999999999999988764
No 159
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=63.54 E-value=18 Score=25.16 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=41.0
Q ss_pred HHHHHHhccCC-CEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 54 DSVRKVFDKYG-SVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 54 ~~L~~~F~~~G-~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
++|.+.|...| +|..|.-+....+ .+....||+.+...+... .|+-+.|.+..|+|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCC
Confidence 35666677666 4666666666544 566678888887655333 4566788999999986543
No 160
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=63.22 E-value=1.2 Score=43.21 Aligned_cols=72 Identities=13% Similarity=0.116 Sum_probs=53.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECC
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~g 107 (279)
.-..++|||.|++++++-.+|+.++..+--+..+.+-....- ...-+.+|.|.-......|+.+||+..+..
T Consensus 228 ~hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 228 THKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred hhHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 345679999999999999999999998866666655433222 355578999987777777777787765543
No 161
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=61.09 E-value=21 Score=24.42 Aligned_cols=20 Identities=15% Similarity=0.469 Sum_probs=16.0
Q ss_pred HHHHHHhccCCCEEEEEEee
Q 023648 54 DSVRKVFDKYGSVVAVKIVN 73 (279)
Q Consensus 54 ~~L~~~F~~~G~I~~v~i~~ 73 (279)
.+|+++|+..|+|.-+-|..
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 57899999999998665543
No 162
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=54.46 E-value=7 Score=35.70 Aligned_cols=10 Identities=0% Similarity=0.335 Sum_probs=5.6
Q ss_pred CceEEEEEEc
Q 023648 79 GKCYGFVTFG 88 (279)
Q Consensus 79 ~~g~afV~f~ 88 (279)
..||-||-|.
T Consensus 159 alGFmYiRYt 168 (453)
T KOG2888|consen 159 ALGFMYIRYT 168 (453)
T ss_pred hheeeEEeec
Confidence 4456666664
No 163
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=52.16 E-value=18 Score=33.62 Aligned_cols=68 Identities=15% Similarity=0.217 Sum_probs=47.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEE-EEEEeeCCCC---CCceEEEEEEcChHHHHHHHHhcCCcEEC
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVV-AVKIVNDRST---RGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~-~v~i~~d~~~---~~~g~afV~f~~~~~A~~Al~~l~g~~i~ 106 (279)
...|.|.+||+..++.+|.+.+..|-.-. ...+.....+ +.-+.|||.|...++.......++|++|-
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 34678889999999998887777654322 1222212111 34567999999999988888888888763
No 164
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=52.12 E-value=19 Score=30.11 Aligned_cols=36 Identities=22% Similarity=0.078 Sum_probs=28.9
Q ss_pred CCEEEEEEeeCCCC--CCceEEEEEEcChHHHHHHHHh
Q 023648 64 GSVVAVKIVNDRST--RGKCYGFVTFGNPRSAVDAIND 99 (279)
Q Consensus 64 G~I~~v~i~~d~~~--~~~g~afV~f~~~~~A~~Al~~ 99 (279)
|.+..|.+-..... ..+|-.||+|.+.++|.+.++.
T Consensus 132 ~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 132 GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 78888887654444 5789999999999999988774
No 165
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=51.66 E-value=34 Score=24.68 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=25.5
Q ss_pred CEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEE
Q 023648 65 SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI 105 (279)
Q Consensus 65 ~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i 105 (279)
.|.++-...+ .+||.|||=.++.++..|+..+.+...
T Consensus 33 ~I~Si~~~~~----lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 33 NIYSIFAPDS----LKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp ---EEEE-TT----STSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred ceEEEEEeCC----CceEEEEEeCCHHHHHHHHhcccceee
Confidence 3555555443 789999999999999999998766443
No 166
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=50.95 E-value=9.7 Score=38.93 Aligned_cols=11 Identities=9% Similarity=0.323 Sum_probs=6.1
Q ss_pred CCCeEEEcCCC
Q 023648 38 DESSVYVGGLP 48 (279)
Q Consensus 38 ~~~~l~V~nLp 48 (279)
....+|+|++.
T Consensus 144 ~~qR~f~gvvt 154 (1194)
T KOG4246|consen 144 EPQRRFAGVVT 154 (1194)
T ss_pred Ccceeeehhhh
Confidence 34566666553
No 167
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=50.31 E-value=13 Score=33.92 Aligned_cols=23 Identities=17% Similarity=0.458 Sum_probs=12.9
Q ss_pred eEEEcCCCC-----CCcHHHHHHHhccC
Q 023648 41 SVYVGGLPY-----SANEDSVRKVFDKY 63 (279)
Q Consensus 41 ~l~V~nLp~-----~~te~~L~~~F~~~ 63 (279)
.+||..|.+ .....+|...|+.|
T Consensus 154 SpYIRalGFmYiRYtqpp~dLw~WyEpy 181 (453)
T KOG2888|consen 154 SPYIRALGFMYIRYTQPPADLWDWYEPY 181 (453)
T ss_pred chhhhhheeeEEeecCChhHHHHHhhhh
Confidence 445554433 33456777777766
No 168
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.36 E-value=3.5 Score=39.00 Aligned_cols=76 Identities=11% Similarity=-0.064 Sum_probs=53.9
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEee
Q 023648 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~ 116 (279)
+..|+..||..+++.+|.-+|..||.|..+.+.....+ .....+||...+ ..|..+|+.+--..+-|..+.|.++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 35677888999999999999999999988877554433 455677776654 45566666555556666667666553
No 169
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=44.11 E-value=1.8e+02 Score=25.10 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=17.5
Q ss_pred EEEEEcChHHHHHHHH--hcCCcEE
Q 023648 83 GFVTFGNPRSAVDAIN--DMNGRTI 105 (279)
Q Consensus 83 afV~f~~~~~A~~Al~--~l~g~~i 105 (279)
-|-.=.+.++|..||. .|+|.+|
T Consensus 61 rf~~k~daedA~damDG~~ldgRel 85 (256)
T KOG4207|consen 61 RFHDKRDAEDALDAMDGAVLDGREL 85 (256)
T ss_pred EeeecchHHHHHHhhcceeecccee
Confidence 3555567889999985 6789887
No 170
>PF14893 PNMA: PNMA
Probab=43.52 E-value=21 Score=32.92 Aligned_cols=57 Identities=18% Similarity=0.309 Sum_probs=35.3
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhc----cCCCEEEEEEeeCCCCCCceEEEEEEcChH
Q 023648 34 MTIDDESSVYVGGLPYSANEDSVRKVFD----KYGSVVAVKIVNDRSTRGKCYGFVTFGNPR 91 (279)
Q Consensus 34 ~~~~~~~~l~V~nLp~~~te~~L~~~F~----~~G~I~~v~i~~d~~~~~~g~afV~f~~~~ 91 (279)
+..++...|.|.+||.++++.+|++.+. ..|...-+.-+.-+. ...--|+|+|...-
T Consensus 13 m~~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~-~~~~aalve~~e~~ 73 (331)
T PF14893_consen 13 MGVDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRRE-ENAKAALVEFAEDV 73 (331)
T ss_pred cCcChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhh-cccceeeeeccccc
Confidence 4566778999999999999999887764 344432111111111 12336888887543
No 171
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=42.05 E-value=79 Score=30.84 Aligned_cols=64 Identities=16% Similarity=0.118 Sum_probs=42.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhc----cCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcC
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFD----KYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~----~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~ 101 (279)
.+..|-++.-..+...-+|..+|- .+|-|+.+.|...+........++.|.+.++|..|+..+-
T Consensus 188 ~G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 188 DGEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CCcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 344455543222233346667664 6888998887765554455677889999999999988753
No 172
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=41.76 E-value=84 Score=25.36 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=26.8
Q ss_pred EEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCc
Q 023648 66 VVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGR 103 (279)
Q Consensus 66 I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~ 103 (279)
|..|.++.. .+||.||+....+++..++..+.+.
T Consensus 36 i~~i~vp~~----fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPPE----LKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccCC----CCcEEEEEEEChHHHHHHHhcCCCE
Confidence 556655544 7899999999889999999888764
No 173
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=38.89 E-value=17 Score=36.26 Aligned_cols=72 Identities=15% Similarity=0.238 Sum_probs=54.8
Q ss_pred eEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 41 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
+||+.+-...-+..-|..++..+++++...++..... ....-+|++|.....++.|.. |.+..+....|++.
T Consensus 513 ~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s-~p~k~fa~~~~ks~ 585 (681)
T KOG3702|consen 513 TIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKS-LPNKKFASKCLKSH 585 (681)
T ss_pred ceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhc-cccccccccceecc
Confidence 7888877777777888899999999987777655433 344589999999988877755 67777777776654
No 174
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=38.76 E-value=26 Score=35.33 Aligned_cols=9 Identities=11% Similarity=0.250 Sum_probs=4.6
Q ss_pred EEEEEcChH
Q 023648 83 GFVTFGNPR 91 (279)
Q Consensus 83 afV~f~~~~ 91 (279)
+||.|.++.
T Consensus 695 ~~~k~~de~ 703 (877)
T KOG0151|consen 695 NPVKYDDED 703 (877)
T ss_pred cccccchhh
Confidence 556664433
No 175
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=38.09 E-value=66 Score=23.51 Aligned_cols=48 Identities=23% Similarity=0.345 Sum_probs=29.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEc
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFG 88 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~ 88 (279)
..-||||+++..+-+.-...+.+..+.-. +.|+....+ ..||+|-.+-
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~-a~m~~~~~n-eqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGS-AVMVWSDNN-EQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCcc-EEEEEccCC-CCCEEEEEeC
Confidence 45799999998887766555555433322 233332222 6789988773
No 176
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=37.63 E-value=14 Score=34.62 Aligned_cols=59 Identities=19% Similarity=0.147 Sum_probs=46.1
Q ss_pred CeEEEcCCCCCCcH--------HHHHHHhcc--CCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHH
Q 023648 40 SSVYVGGLPYSANE--------DSVRKVFDK--YGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98 (279)
Q Consensus 40 ~~l~V~nLp~~~te--------~~L~~~F~~--~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~ 98 (279)
..+|+.+++.+.+. ++|..+|.. .+++..|.+..+... ...|-.|++|.....|++++.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 46777777665443 489999998 677788887776633 688889999999999999974
No 177
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=37.54 E-value=1.4e+02 Score=22.05 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=32.3
Q ss_pred eEEEcCCCCCCcHHHHHHH-------hccC-CCEEEEEEee------CCCCCCce-EEEEEEcChHHHHHHHHh
Q 023648 41 SVYVGGLPYSANEDSVRKV-------FDKY-GSVVAVKIVN------DRSTRGKC-YGFVTFGNPRSAVDAIND 99 (279)
Q Consensus 41 ~l~V~nLp~~~te~~L~~~-------F~~~-G~I~~v~i~~------d~~~~~~g-~afV~f~~~~~A~~Al~~ 99 (279)
++|| |.++++++++..+ +... |.|..+...- .-.....| |.++.|.-..++.+.|+.
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 5666 3556666655544 4443 4665554221 11123455 688899877777777763
No 178
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=37.09 E-value=1.2e+02 Score=19.77 Aligned_cols=54 Identities=22% Similarity=0.270 Sum_probs=39.8
Q ss_pred eEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcCh----HHHHHHHHh
Q 023648 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNP----RSAVDAIND 99 (279)
Q Consensus 41 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~----~~A~~Al~~ 99 (279)
||.|.||.-..-...|+..+...-.|..+.+-.. .+-+-|.|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~-----~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE-----TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC-----CCEEEEEEecCCCCHHHHHHHHHH
Confidence 5778888877778889999999888888877553 45777888644 555666654
No 179
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=36.62 E-value=33 Score=25.76 Aligned_cols=39 Identities=10% Similarity=0.240 Sum_probs=24.7
Q ss_pred cCCCEEEEEEee-CCCCCCceEEEEEEcChHHHHHHHHhc
Q 023648 62 KYGSVVAVKIVN-DRSTRGKCYGFVTFGNPRSAVDAINDM 100 (279)
Q Consensus 62 ~~G~I~~v~i~~-d~~~~~~g~afV~f~~~~~A~~Al~~l 100 (279)
.||+++.+.... -+.....-|.+++|.+.+...+|..+|
T Consensus 47 P~Gk~T~F~rAVkA~ddE~VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 47 PYGKLTDFPRAVKAKDDEEVVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred CCCcccchhhhhhccCCcEEEEEEEEcCchhHHHHHHHHh
Confidence 355555443322 122234569999999999888887754
No 180
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=34.10 E-value=57 Score=29.02 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=23.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEE
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVA 68 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~ 68 (279)
.....|+|||++++..-|..++...-.+..
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~ 124 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQD 124 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccce
Confidence 346779999999999999988876544433
No 181
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=33.99 E-value=2.7e+02 Score=23.36 Aligned_cols=13 Identities=31% Similarity=0.278 Sum_probs=7.7
Q ss_pred CCCeEEEcCCCCC
Q 023648 38 DESSVYVGGLPYS 50 (279)
Q Consensus 38 ~~~~l~V~nLp~~ 50 (279)
+-..|||.-.|+.
T Consensus 36 ~lrsvWvArnPPG 48 (195)
T KOG0107|consen 36 PLRSVWVARNPPG 48 (195)
T ss_pred cceeEEEeecCCC
Confidence 4456777655554
No 182
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=33.81 E-value=25 Score=30.72 Aligned_cols=35 Identities=11% Similarity=0.406 Sum_probs=28.8
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEE
Q 023648 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVA 68 (279)
Q Consensus 34 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~ 68 (279)
.....-.+||+-|||..++++.|..+.+++|-+..
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 34455679999999999999999999999885543
No 183
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=33.20 E-value=40 Score=29.66 Aligned_cols=31 Identities=32% Similarity=0.685 Sum_probs=24.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhc--cCCCEEEE
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFD--KYGSVVAV 69 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~--~~G~I~~v 69 (279)
...++|+|||+.++..-|..++. .||.+.-+
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~ 129 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRVRMV 129 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEE
T ss_pred CceEEEEEecccchHHHHHHHhhcccccccceE
Confidence 45789999999999999988886 46654433
No 184
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=30.76 E-value=1.8e+02 Score=26.46 Aligned_cols=8 Identities=13% Similarity=0.459 Sum_probs=4.2
Q ss_pred EEEcChHH
Q 023648 85 VTFGNPRS 92 (279)
Q Consensus 85 V~f~~~~~ 92 (279)
|.|.+.++
T Consensus 109 LnydT~Es 116 (335)
T KOG0113|consen 109 LNYDTSES 116 (335)
T ss_pred ccccccHH
Confidence 45665544
No 185
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=30.04 E-value=1.4e+02 Score=28.25 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=41.4
Q ss_pred CCCeEEEcC-CCCCCcHHHHHHHhc----cCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhc
Q 023648 38 DESSVYVGG-LPYSANEDSVRKVFD----KYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM 100 (279)
Q Consensus 38 ~~~~l~V~n-Lp~~~te~~L~~~F~----~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l 100 (279)
.+..+.++. .+.+...-+|..+|. .+|-|+.+.|...+......+.++.|.+.++|..|+..+
T Consensus 130 ~G~~~~~~~~~~~~~~g~dl~~l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~ 197 (413)
T TIGR00387 130 DGEILRIGGKTAKDVAGYDLTGLFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDI 197 (413)
T ss_pred CCCEEEeCCcccCCCCCCChhhhcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHH
Confidence 344454442 222333346777774 478888888876655545567788999999999998655
No 186
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=29.57 E-value=1.4e+02 Score=20.63 Aligned_cols=43 Identities=14% Similarity=0.246 Sum_probs=29.2
Q ss_pred HHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhc
Q 023648 54 DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM 100 (279)
Q Consensus 54 ~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l 100 (279)
..|.+.+..+| +..+.|.- ...-+++|+.+.+.+.++.+++.|
T Consensus 37 ~~~~~~~~~~G-a~~~~~sG---sG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSG---SGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEET---TSSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCC---CCCCCeEEEEECCHHHHHHHHHHH
Confidence 45777778899 44444432 112558888888888888888765
No 187
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.90 E-value=85 Score=30.59 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=45.2
Q ss_pred CeEEEcCCCCCCcH---HHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEE
Q 023648 40 SSVYVGGLPYSANE---DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (279)
Q Consensus 40 ~~l~V~nLp~~~te---~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i 110 (279)
.--+||||+.-... ..|..+=.+||+|-.++|-. .-.|...+.+.|+.|+.. ++..+.+++.
T Consensus 33 ~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~--------~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 33 PLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS--------VPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred CCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC--------ceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 44568888754332 44556666899999887732 236778888999999985 7889988876
No 188
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=28.06 E-value=50 Score=29.81 Aligned_cols=31 Identities=32% Similarity=0.357 Sum_probs=22.9
Q ss_pred EEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 83 GFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 83 afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
|||+|.+..+|+.|++.+.... ...+.|+.|
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeC
Confidence 7999999999999999654433 344566555
No 189
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=27.82 E-value=1.6e+02 Score=29.14 Aligned_cols=50 Identities=10% Similarity=0.160 Sum_probs=36.6
Q ss_pred cHHHHHHHh----ccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcC
Q 023648 52 NEDSVRKVF----DKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101 (279)
Q Consensus 52 te~~L~~~F----~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~ 101 (279)
+.-+|..+| ..+|-|+.+.|...+.......+++.|.+.++|..|+..+.
T Consensus 279 ~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 279 AGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATM 332 (555)
T ss_pred CCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHH
Confidence 345677776 35888998888655444456678999999999988887643
No 190
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=26.82 E-value=1.4e+02 Score=31.44 Aligned_cols=29 Identities=14% Similarity=0.171 Sum_probs=25.6
Q ss_pred CCceEEEEEEcChHHHHHHHHhcCCcEEC
Q 023648 78 RGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (279)
Q Consensus 78 ~~~g~afV~f~~~~~A~~Al~~l~g~~i~ 106 (279)
+.+||-|||-..+..+..||+.|-+..+.
T Consensus 208 ~lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 208 HLKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred ccceeEEEEechhHHHHHHHhhhhhheec
Confidence 47899999999999999999998877666
No 191
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=26.58 E-value=1.4e+02 Score=21.87 Aligned_cols=25 Identities=24% Similarity=0.101 Sum_probs=19.6
Q ss_pred CceEEEEEEcChHHHHHHHHhcCCc
Q 023648 79 GKCYGFVTFGNPRSAVDAINDMNGR 103 (279)
Q Consensus 79 ~~g~afV~f~~~~~A~~Al~~l~g~ 103 (279)
..||.||++.-...+..+|..+.|.
T Consensus 58 fpGYvFv~~~~~~~~~~~i~~~~~v 82 (106)
T smart00738 58 FPGYIFVEADLEDEVWTAIRGTPGV 82 (106)
T ss_pred CCCEEEEEEEeCCcHHHHHhcCCCc
Confidence 4689999998777777888777664
No 192
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=26.36 E-value=48 Score=32.40 Aligned_cols=40 Identities=38% Similarity=0.481 Sum_probs=34.7
Q ss_pred CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 78 RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 78 ~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
+...|+++.|++...+.+|+..++|..+.+..+.|..+.+
T Consensus 61 ~~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~ 100 (534)
T KOG2187|consen 61 KMPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGAT 100 (534)
T ss_pred CCCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccc
Confidence 3556999999999999999999999999998888876644
No 193
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=26.01 E-value=2.1e+02 Score=21.13 Aligned_cols=47 Identities=32% Similarity=0.452 Sum_probs=27.6
Q ss_pred eEEEcCCCCCCcHHHH---HHHhccCCCEEEEEE--ee-CCCCCCceEEEEEE
Q 023648 41 SVYVGGLPYSANEDSV---RKVFDKYGSVVAVKI--VN-DRSTRGKCYGFVTF 87 (279)
Q Consensus 41 ~l~V~nLp~~~te~~L---~~~F~~~G~I~~v~i--~~-d~~~~~~g~afV~f 87 (279)
..|+.+||..+-+.++ +.+|..+.+-..|.+ .. .......|++.+.+
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~ 64 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLV 64 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEE
Confidence 5689999999877654 566667765455544 11 22235666665444
No 194
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=25.38 E-value=42 Score=24.66 Aligned_cols=24 Identities=25% Similarity=0.569 Sum_probs=19.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhc
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFD 61 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~ 61 (279)
...+|.|.|||..+.+++|++.++
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeEE
Confidence 356899999999999999987653
No 195
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=25.02 E-value=1.2e+02 Score=22.73 Aligned_cols=50 Identities=22% Similarity=0.267 Sum_probs=28.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcCh
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNP 90 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~ 90 (279)
..-||||+++..+-+.--..+-+.++. -.+.|+.... ...||+|-.+-..
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~~~-~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWATN-TESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEcCC-CCCCcEEEecCCC
Confidence 457999998887766544444443433 1222332212 2448999887753
No 196
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=24.50 E-value=90 Score=27.18 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=20.9
Q ss_pred eEEEcCCCCCCcHHHHHHHhccCCC
Q 023648 41 SVYVGGLPYSANEDSVRKVFDKYGS 65 (279)
Q Consensus 41 ~l~V~nLp~~~te~~L~~~F~~~G~ 65 (279)
.+.|+|||++++...|..++..+|.
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~~ 120 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPKF 120 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCCC
Confidence 4789999999999999999875544
No 197
>PRK11901 hypothetical protein; Reviewed
Probab=23.82 E-value=1.4e+02 Score=27.45 Aligned_cols=61 Identities=10% Similarity=0.144 Sum_probs=36.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEE--EEEEcChHHHHHHHHhcCC
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYG--FVTFGNPRSAVDAINDMNG 102 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~a--fV~f~~~~~A~~Al~~l~g 102 (279)
..++|-|..+ ..++.|..|..+++ +..+.|.........=|+ |=.|.+.++|..|+..|--
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 3456666554 45777888877765 344444432111111133 3368999999999998864
No 198
>COG5584 Predicted small secreted protein [Function unknown]
Probab=23.75 E-value=1.4e+02 Score=22.39 Aligned_cols=32 Identities=13% Similarity=0.235 Sum_probs=23.6
Q ss_pred CCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC
Q 023648 46 GLPYSANEDSVRKVFDKYGSVVAVKIVNDRST 77 (279)
Q Consensus 46 nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~ 77 (279)
||..+.--.-+++.|.++|+|+--.|...+..
T Consensus 29 ~is~e~alk~vk~afk~~mnI~GSwI~~~pe~ 60 (103)
T COG5584 29 NISRENALKVVKEAFKQFMNIKGSWIVYEPEV 60 (103)
T ss_pred ccChhHHHHHHHHHhcccCCcceeEEEEeccc
Confidence 34555555678899999999998777766554
No 199
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=23.09 E-value=99 Score=29.22 Aligned_cols=50 Identities=12% Similarity=0.206 Sum_probs=37.5
Q ss_pred CCCCcHHHHHHHh----ccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHH
Q 023648 48 PYSANEDSVRKVF----DKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAI 97 (279)
Q Consensus 48 p~~~te~~L~~~F----~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al 97 (279)
-.+-|--+|+.+| ...|.|+.|.|+..+..+....||+-.++.+++++++
T Consensus 233 RKDNTgydlkhLFIGSEGtlGVvT~vSil~~~kpksvn~af~gi~sf~~v~k~f 286 (511)
T KOG1232|consen 233 RKDNTGYDLKHLFIGSEGTLGVVTKVSILAPPKPKSVNVAFIGIESFDDVQKVF 286 (511)
T ss_pred cccCccccchhheecCCceeeEEeeEEEeecCCCcceeEEEEccccHHHHHHHH
Confidence 3344555777888 3578889999988776677889999988888877754
No 200
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=23.03 E-value=3.4e+02 Score=28.13 Aligned_cols=20 Identities=5% Similarity=0.099 Sum_probs=13.2
Q ss_pred CceEEEEEEcChHHHHHHHH
Q 023648 79 GKCYGFVTFGNPRSAVDAIN 98 (279)
Q Consensus 79 ~~g~afV~f~~~~~A~~Al~ 98 (279)
..|+.||-|+...++..|++
T Consensus 508 ~lGVt~IP~~kLt~dl~~~~ 527 (894)
T KOG0132|consen 508 ELGVTYIPWEKLTDDLEAWC 527 (894)
T ss_pred ccCeeEeehHhcCHHHHHhh
Confidence 34667777777766666654
No 201
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=22.98 E-value=33 Score=27.07 Aligned_cols=68 Identities=10% Similarity=0.144 Sum_probs=42.8
Q ss_pred eEEEcCCC--CCCcHHHHHHHh----ccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 41 SVYVGGLP--YSANEDSVRKVF----DKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 41 ~l~V~nLp--~~~te~~L~~~F----~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
...||.+. ..++...|...+ ...|.+.-..+ ..++..+.|.+++++..++. .....+++..|.++.
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-------~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~ 88 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-------GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQR 88 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-------CCCeEEEEEEeccceeEEEe-cccccccccchhhhh
Confidence 34455442 234555555444 44455554444 35689999999999999987 455677777777664
Q ss_pred ee
Q 023648 115 VA 116 (279)
Q Consensus 115 a~ 116 (279)
-.
T Consensus 89 W~ 90 (153)
T PF14111_consen 89 WS 90 (153)
T ss_pred hc
Confidence 44
No 202
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=22.75 E-value=59 Score=19.70 Aligned_cols=17 Identities=24% Similarity=0.589 Sum_probs=10.3
Q ss_pred CCCcHHHHHHHhccCCC
Q 023648 49 YSANEDSVRKVFDKYGS 65 (279)
Q Consensus 49 ~~~te~~L~~~F~~~G~ 65 (279)
..+++++|+++|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 36789999999987643
No 203
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=21.94 E-value=91 Score=21.56 Aligned_cols=26 Identities=23% Similarity=0.278 Sum_probs=20.9
Q ss_pred EEEEEEcChHHHHHHHHhcCCcEECC
Q 023648 82 YGFVTFGNPRSAVDAINDMNGRTIDG 107 (279)
Q Consensus 82 ~afV~f~~~~~A~~Al~~l~g~~i~g 107 (279)
+.+|.|.+..+|.+|-+.|...-|..
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 78999999999999988876655433
No 204
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=21.88 E-value=1.5e+02 Score=27.51 Aligned_cols=46 Identities=15% Similarity=0.279 Sum_probs=28.4
Q ss_pred CCCCCCcHHHHHHHhcc-CCCEEEEEEeeC---CCC---CCceEEEEEEcChH
Q 023648 46 GLPYSANEDSVRKVFDK-YGSVVAVKIVND---RST---RGKCYGFVTFGNPR 91 (279)
Q Consensus 46 nLp~~~te~~L~~~F~~-~G~I~~v~i~~d---~~~---~~~g~afV~f~~~~ 91 (279)
.|...++.++|.++|.+ |..-..|+|+.. ..+ ....||.|-|...+
T Consensus 252 ~l~~~~t~~~i~~~y~~~Y~~epfVrv~~~~~~P~~k~V~GsN~cdIgf~~d~ 304 (349)
T COG0002 252 KLKDLVTLEELHAAYEEFYAGEPFVRVVPEGGYPDTKAVAGSNFCDIGFAVDE 304 (349)
T ss_pred ecCCCCCHHHHHHHHHHHhCCCCeEEEecCCCCCChhhhcCCcceEEEEEEcC
Confidence 34455899999999987 444445666542 122 34557777775443
No 205
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=21.55 E-value=1.6e+02 Score=29.31 Aligned_cols=9 Identities=22% Similarity=0.217 Sum_probs=3.8
Q ss_pred cccccccCC
Q 023648 259 HQLREFSSN 267 (279)
Q Consensus 259 ~~~~~~~~~ 267 (279)
+..|+.+..
T Consensus 246 n~~R~~~~~ 254 (752)
T KOG0670|consen 246 NTERDSSTP 254 (752)
T ss_pred CCcccccCC
Confidence 344444443
No 206
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=21.29 E-value=25 Score=31.07 Aligned_cols=73 Identities=22% Similarity=0.309 Sum_probs=52.5
Q ss_pred CeEEEcCCCCCCcHHH---HHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 40 SSVYVGGLPYSANEDS---VRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~---L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
..+|++++-..+..+- +...|+.|-.+...+++.+......+++|+.|.......++...-+++.|+-.+|++
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~ 172 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRL 172 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceee
Confidence 4566666655554433 377788888888888888777778899999999877777777666666776665544
No 207
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=21.10 E-value=3e+02 Score=21.64 Aligned_cols=25 Identities=16% Similarity=-0.015 Sum_probs=21.1
Q ss_pred CceEEEEEEcChHHHHHHHHhcCCc
Q 023648 79 GKCYGFVTFGNPRSAVDAINDMNGR 103 (279)
Q Consensus 79 ~~g~afV~f~~~~~A~~Al~~l~g~ 103 (279)
.+||.||++....+...++..+.|.
T Consensus 37 fpGYvFV~~~~~~~~~~~i~~~~gv 61 (145)
T TIGR00405 37 LKGYILVEAETKIDMRNPIIGVPHV 61 (145)
T ss_pred CCcEEEEEEECcHHHHHHHhCCCCE
Confidence 7899999999888888888877764
No 208
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=20.41 E-value=3e+02 Score=18.87 Aligned_cols=45 Identities=22% Similarity=0.331 Sum_probs=35.1
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcC
Q 023648 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGN 89 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~ 89 (279)
.+|+|-++.-.--...+...+.....|..+.+-.. .+-++|.|..
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~-----~~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE-----KGTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc-----cCeEEEEEcC
Confidence 47788888777677788888888877888887654 4468999987
Done!