Query 023648
Match_columns 279
No_of_seqs 371 out of 2540
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 10:26:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023648.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023648hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 99.9 2E-23 6.8E-28 196.6 19.6 85 36-120 99-184 (437)
2 4fxv_A ELAV-like protein 1; RN 99.9 1E-21 3.5E-26 148.2 11.6 82 36-117 16-98 (99)
3 3s8s_A Histone-lysine N-methyl 99.8 3.1E-20 1E-24 142.7 11.8 81 37-117 4-85 (110)
4 1h2v_Z 20 kDa nuclear CAP bind 99.8 4E-20 1.4E-24 150.3 13.0 89 33-121 33-122 (156)
5 3ex7_B RNA-binding protein 8A; 99.8 2E-20 6.9E-25 146.6 9.4 88 34-121 17-105 (126)
6 2dnz_A Probable RNA-binding pr 99.8 6.6E-20 2.2E-24 136.4 11.8 85 37-121 3-88 (95)
7 3bs9_A Nucleolysin TIA-1 isofo 99.8 6.3E-20 2.2E-24 134.2 11.1 82 37-118 4-86 (87)
8 2cq0_A Eukaryotic translation 99.8 9.3E-20 3.2E-24 137.8 12.0 87 35-121 11-98 (103)
9 1whw_A Hypothetical protein ri 99.8 1E-19 3.6E-24 136.4 12.1 86 36-121 5-91 (99)
10 3md1_A Nuclear and cytoplasmic 99.8 1.4E-19 4.6E-24 131.2 11.7 81 39-119 1-82 (83)
11 2dnm_A SRP46 splicing factor; 99.8 5.7E-20 1.9E-24 138.9 10.1 87 35-121 9-96 (103)
12 2do4_A Squamous cell carcinoma 99.8 1.5E-19 5.1E-24 135.9 12.1 85 36-120 14-98 (100)
13 2dgo_A Cytotoxic granule-assoc 99.8 3.7E-19 1.3E-23 137.1 14.6 87 35-121 11-98 (115)
14 2fy1_A RNA-binding motif prote 99.8 1E-19 3.6E-24 141.0 11.4 85 36-120 4-88 (116)
15 1x5t_A Splicing factor 3B subu 99.8 7.9E-20 2.7E-24 136.2 10.3 85 37-121 3-89 (96)
16 1x5u_A Splicing factor 3B subu 99.8 9.6E-20 3.3E-24 138.1 10.6 87 35-121 11-98 (105)
17 2d9p_A Polyadenylate-binding p 99.8 1.4E-19 4.8E-24 136.8 11.5 86 35-121 11-96 (103)
18 2cqb_A Peptidyl-prolyl CIS-tra 99.8 7.8E-20 2.7E-24 137.9 10.0 86 36-121 9-95 (102)
19 2dgs_A DAZ-associated protein 99.8 1.6E-19 5.5E-24 135.5 11.6 85 36-121 7-92 (99)
20 4f25_A Polyadenylate-binding p 99.8 9.8E-20 3.3E-24 140.8 10.7 81 39-120 5-85 (115)
21 2cq3_A RNA-binding protein 9; 99.8 3.8E-19 1.3E-23 134.3 13.7 86 35-121 11-96 (103)
22 2cpf_A RNA binding motif prote 99.8 1.7E-19 5.6E-24 135.1 11.5 85 37-121 3-91 (98)
23 2cqi_A Nucleolysin TIAR; RNA r 99.8 3E-19 1E-23 134.9 12.7 85 35-120 11-95 (103)
24 2cpz_A CUG triplet repeat RNA- 99.8 1.6E-19 5.6E-24 139.2 11.2 86 36-121 22-108 (115)
25 1u6f_A Tcubp1, RNA-binding pro 99.8 3.3E-19 1.1E-23 141.9 13.3 87 35-121 38-125 (139)
26 2lxi_A RNA-binding protein 10; 99.8 2.3E-20 7.8E-25 138.5 6.0 81 40-120 2-85 (91)
27 1wi8_A EIF-4B, eukaryotic tran 99.8 2.2E-19 7.4E-24 136.0 11.3 84 36-121 12-97 (104)
28 2dgx_A KIAA0430 protein; RRM d 99.8 1.9E-19 6.5E-24 134.6 10.7 83 36-120 6-92 (96)
29 1x5s_A Cold-inducible RNA-bind 99.8 1E-19 3.6E-24 137.2 9.3 86 36-121 9-95 (102)
30 2dnh_A Bruno-like 5, RNA bindi 99.8 2.8E-19 9.6E-24 135.5 11.7 85 37-121 13-100 (105)
31 2x1f_A MRNA 3'-END-processing 99.8 2.1E-19 7.2E-24 134.1 10.8 82 38-119 1-83 (96)
32 3ulh_A THO complex subunit 4; 99.8 3E-19 1E-23 135.8 11.9 83 34-116 24-106 (107)
33 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.6E-19 5.5E-24 131.4 9.9 80 37-116 5-85 (85)
34 2dng_A Eukaryotic translation 99.8 4.6E-19 1.6E-23 134.0 12.7 85 35-121 11-96 (103)
35 1x4h_A RNA-binding protein 28; 99.8 2.7E-19 9.2E-24 136.8 11.6 87 35-121 11-104 (111)
36 1x4c_A Splicing factor, argini 99.8 4.6E-19 1.6E-23 135.3 12.8 78 37-120 13-95 (108)
37 2cqc_A Arginine/serine-rich sp 99.8 2.1E-19 7.2E-24 133.5 10.6 82 36-117 12-94 (95)
38 1p27_B RNA-binding protein 8A; 99.8 1.7E-19 6E-24 136.9 10.3 85 36-120 20-105 (106)
39 4a8x_A RNA-binding protein wit 99.8 2.2E-19 7.4E-24 131.5 10.1 82 38-119 3-86 (88)
40 2e5h_A Zinc finger CCHC-type a 99.8 3E-19 1E-23 132.6 11.0 81 36-116 13-94 (94)
41 2do0_A HnRNP M, heterogeneous 99.8 7.4E-19 2.5E-23 135.1 13.5 85 36-120 12-96 (114)
42 2ywk_A Putative RNA-binding pr 99.8 2.6E-19 8.9E-24 133.1 10.6 82 36-117 13-94 (95)
43 1x4a_A Splicing factor, argini 99.8 5.2E-19 1.8E-23 135.1 12.0 85 35-121 18-102 (109)
44 2cph_A RNA binding motif prote 99.8 3.4E-19 1.2E-23 135.4 10.9 86 36-121 12-100 (107)
45 2cqd_A RNA-binding region cont 99.8 9.6E-19 3.3E-23 135.1 13.6 84 36-120 14-98 (116)
46 1oo0_B CG8781-PA, drosophila Y 99.8 3.2E-19 1.1E-23 136.4 10.7 85 36-120 23-108 (110)
47 2lkz_A RNA-binding protein 5; 99.8 6.5E-20 2.2E-24 137.3 6.6 79 39-117 9-94 (95)
48 2div_A TRNA selenocysteine ass 99.8 2.1E-19 7.2E-24 134.7 9.5 86 35-120 5-96 (99)
49 2dhg_A TRNA selenocysteine ass 99.8 3.3E-19 1.1E-23 134.8 10.2 85 36-120 6-92 (104)
50 2khc_A Testis-specific RNP-typ 99.8 7E-19 2.4E-23 136.2 12.2 83 34-116 35-118 (118)
51 2cpe_A RNA-binding protein EWS 99.8 3.7E-19 1.3E-23 136.7 10.4 87 35-121 11-106 (113)
52 2dgp_A Bruno-like 4, RNA bindi 99.8 2.4E-19 8.3E-24 136.1 8.7 87 35-121 9-99 (106)
53 2la6_A RNA-binding protein FUS 99.8 2.8E-19 9.7E-24 134.2 8.8 82 35-116 9-99 (99)
54 1rk8_A CG8781-PA, CG8781-PA pr 99.8 7.2E-19 2.5E-23 144.3 11.9 87 35-121 68-155 (165)
55 2cpi_A CCR4-NOT transcription 99.8 5.4E-19 1.8E-23 135.7 10.4 85 35-119 11-102 (111)
56 2jrs_A RNA-binding protein 39; 99.8 2.5E-19 8.5E-24 137.1 8.4 85 35-119 22-107 (108)
57 2dgu_A Heterogeneous nuclear r 99.8 1.5E-18 5E-23 131.3 12.6 79 36-121 8-86 (103)
58 3ucg_A Polyadenylate-binding p 99.8 9.9E-19 3.4E-23 128.3 11.2 79 39-118 6-85 (89)
59 2err_A Ataxin-2-binding protei 99.8 3.9E-19 1.3E-23 136.1 9.4 85 33-118 23-107 (109)
60 2dgv_A HnRNP M, heterogeneous 99.8 6.7E-19 2.3E-23 130.1 10.3 84 36-120 5-88 (92)
61 3s7r_A Heterogeneous nuclear r 99.8 1.6E-18 5.3E-23 126.9 12.2 80 35-115 7-87 (87)
62 2dh8_A DAZ-associated protein 99.8 6.4E-19 2.2E-23 133.6 10.2 85 36-121 13-98 (105)
63 2wbr_A GW182, gawky, LD47780P; 99.8 4.8E-19 1.6E-23 129.5 9.0 75 37-116 5-79 (89)
64 2kt5_A RNA and export factor-b 99.8 1.1E-18 3.8E-23 136.4 11.6 86 35-120 31-116 (124)
65 3p5t_L Cleavage and polyadenyl 99.8 8.1E-20 2.8E-24 134.9 4.8 81 40-120 2-85 (90)
66 3n9u_C Cleavage and polyadenyl 99.8 8E-19 2.7E-23 143.1 11.2 81 38-118 54-137 (156)
67 3ns6_A Eukaryotic translation 99.8 1.3E-19 4.5E-24 136.6 5.9 80 39-118 6-93 (100)
68 1sjq_A Polypyrimidine tract-bi 99.8 5E-19 1.7E-23 134.5 8.9 81 36-121 13-95 (105)
69 2kxn_B Transformer-2 protein h 99.8 3.8E-19 1.3E-23 140.4 8.4 86 34-119 41-127 (129)
70 2cqg_A TDP-43, TAR DNA-binding 99.8 2.8E-18 9.5E-23 129.6 12.9 86 34-121 10-96 (103)
71 3r27_A HnRNP L, heterogeneous 99.8 9.1E-19 3.1E-23 131.8 9.7 79 35-118 17-97 (100)
72 1x4d_A Matrin 3; structural ge 99.8 5E-19 1.7E-23 134.0 8.1 81 35-120 11-94 (102)
73 2cq1_A PTB-like protein L; RRM 99.8 3E-18 1E-22 129.6 12.3 82 35-121 11-94 (101)
74 2dgw_A Probable RNA-binding pr 99.8 2.4E-18 8.2E-23 127.0 11.5 83 36-120 7-89 (91)
75 1s79_A Lupus LA protein; RRM, 99.8 5.4E-19 1.8E-23 134.2 8.1 79 38-117 10-88 (103)
76 2dnq_A RNA-binding protein 4B; 99.8 1.6E-18 5.5E-23 127.8 10.5 79 36-121 5-83 (90)
77 2fc9_A NCL protein; structure 99.8 2E-18 6.8E-23 129.9 11.2 83 36-121 12-94 (101)
78 2cqp_A RNA-binding protein 12; 99.8 5.5E-19 1.9E-23 132.2 8.0 82 37-118 13-95 (98)
79 3beg_B Splicing factor, argini 99.8 4.3E-19 1.5E-23 137.2 7.6 74 38-117 15-93 (115)
80 1x4b_A Heterogeneous nuclear r 99.8 1.5E-18 5E-23 134.0 10.3 82 39-121 27-109 (116)
81 2cq4_A RNA binding motif prote 99.8 1.1E-18 3.7E-23 134.4 9.4 80 39-119 25-105 (114)
82 2ek1_A RNA-binding protein 12; 99.8 4.6E-19 1.6E-23 131.8 6.9 80 38-117 14-94 (95)
83 1why_A Hypothetical protein ri 99.8 1.7E-18 5.8E-23 129.4 9.9 80 36-120 14-95 (97)
84 2rs2_A Musashi-1, RNA-binding 99.8 2.3E-18 8E-23 131.8 10.8 84 36-120 22-106 (109)
85 2nlw_A Eukaryotic translation 99.8 9.3E-19 3.2E-23 133.0 8.5 84 34-118 10-100 (105)
86 1wez_A HnRNP H', FTP-3, hetero 99.8 1.8E-18 6.2E-23 131.0 9.8 82 37-120 13-94 (102)
87 2la4_A Nuclear and cytoplasmic 99.8 1.2E-18 4.2E-23 131.1 8.9 80 33-117 21-100 (101)
88 2dgt_A RNA-binding protein 30; 99.8 3.9E-18 1.3E-22 126.2 11.4 80 35-121 6-85 (92)
89 2cpd_A Apobec-1 stimulating pr 99.8 6.3E-18 2.2E-22 126.8 12.4 79 35-120 11-91 (99)
90 2fc8_A NCL protein; structure 99.8 5.3E-18 1.8E-22 127.7 11.9 84 35-121 11-95 (102)
91 2jwn_A Embryonic polyadenylate 99.8 4.1E-18 1.4E-22 132.9 11.3 81 39-120 36-117 (124)
92 1x4g_A Nucleolysin TIAR; struc 99.8 4E-18 1.4E-22 130.2 11.0 82 35-121 21-102 (109)
93 2xnq_A Nuclear polyadenylated 99.8 4.5E-18 1.5E-22 127.5 11.0 79 34-119 17-96 (97)
94 2ad9_A Polypyrimidine tract-bi 99.8 2.3E-18 7.8E-23 133.9 9.6 83 34-121 26-110 (119)
95 2j76_E EIF-4B, EIF4B, eukaryot 99.8 6.7E-19 2.3E-23 132.6 6.2 83 35-119 15-99 (100)
96 2dnp_A RNA-binding protein 14; 99.8 5.3E-18 1.8E-22 125.0 10.7 78 36-120 6-83 (90)
97 1x4e_A RNA binding motif, sing 99.8 3.4E-19 1.2E-23 129.8 4.2 79 37-115 3-82 (85)
98 1p1t_A Cleavage stimulation fa 99.8 1E-18 3.6E-23 132.0 7.1 81 39-119 8-89 (104)
99 1x5o_A RNA binding motif, sing 99.8 4.2E-18 1.4E-22 130.9 10.6 83 36-118 22-112 (114)
100 2jvo_A Nucleolar protein 3; nu 99.8 2.6E-18 8.8E-23 131.4 9.3 79 35-120 27-105 (108)
101 2kn4_A Immunoglobulin G-bindin 99.8 3.8E-18 1.3E-22 138.6 10.8 85 36-120 67-152 (158)
102 2db1_A Heterogeneous nuclear r 99.8 1.9E-18 6.4E-23 134.2 8.5 81 37-118 15-98 (118)
103 2jvr_A Nucleolar protein 3; RN 99.8 1.6E-18 5.5E-23 133.3 7.7 81 36-119 25-106 (111)
104 2dis_A Unnamed protein product 99.7 4.9E-18 1.7E-22 129.4 10.2 84 37-120 6-94 (109)
105 2ytc_A PRE-mRNA-splicing facto 99.7 6.2E-18 2.1E-22 123.0 10.2 75 37-116 10-85 (85)
106 3q2s_C Cleavage and polyadenyl 99.7 2.3E-18 7.9E-23 148.9 9.2 80 38-117 67-149 (229)
107 2a3j_A U1 small nuclear ribonu 99.7 2.9E-18 9.8E-23 135.0 8.9 83 35-119 25-111 (127)
108 2hvz_A Splicing factor, argini 99.7 1.5E-18 5.1E-23 130.6 6.9 77 40-120 1-77 (101)
109 1wex_A Hypothetical protein (r 99.7 3.7E-18 1.3E-22 129.8 9.1 80 36-120 12-93 (104)
110 1wg5_A Heterogeneous nuclear r 99.7 5.9E-18 2E-22 128.3 10.2 83 36-119 12-95 (104)
111 2cpj_A Non-POU domain-containi 99.7 4.9E-18 1.7E-22 127.4 9.5 81 35-120 11-91 (99)
112 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 5.8E-18 2E-22 134.5 10.4 81 35-115 59-140 (140)
113 2cpy_A RNA-binding protein 12; 99.7 2.4E-18 8.2E-23 132.7 7.8 83 36-119 12-95 (114)
114 2cqh_A IGF-II mRNA-binding pro 99.7 4.2E-18 1.4E-22 126.2 8.7 79 36-120 5-85 (93)
115 2mss_A Protein (musashi1); RNA 99.7 1.1E-18 3.8E-23 124.1 5.3 74 41-115 1-75 (75)
116 2lea_A Serine/arginine-rich sp 99.7 1.3E-18 4.4E-23 138.4 6.0 86 36-121 44-130 (135)
117 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.6E-18 5.5E-23 123.7 5.9 75 40-115 1-76 (77)
118 2kvi_A Nuclear polyadenylated 99.7 2.5E-18 8.5E-23 128.4 7.0 79 36-121 7-86 (96)
119 2m2b_A RNA-binding protein 10; 99.7 1E-18 3.6E-23 138.0 4.9 84 36-120 20-110 (131)
120 1wf1_A RNA-binding protein RAL 99.7 8.7E-18 3E-22 128.5 9.9 77 37-120 25-102 (110)
121 2e5j_A Methenyltetrahydrofolat 99.7 3.4E-18 1.1E-22 127.9 7.4 79 37-119 17-95 (97)
122 3lqv_A PRE-mRNA branch site pr 99.7 8E-18 2.7E-22 129.6 9.5 82 36-119 5-86 (115)
123 2krb_A Eukaryotic translation 99.7 2.5E-18 8.7E-23 124.3 6.2 72 40-112 2-80 (81)
124 2hgl_A HNRPF protein, heteroge 99.7 3.5E-18 1.2E-22 136.1 7.5 82 36-118 41-125 (136)
125 2cpx_A Hypothetical protein FL 99.7 6E-18 2E-22 130.2 8.6 83 36-121 22-108 (115)
126 1nu4_A U1A RNA binding domain; 99.7 3.8E-18 1.3E-22 127.2 6.9 82 36-119 5-90 (97)
127 2ki2_A SS-DNA binding protein 99.7 9.9E-19 3.4E-23 128.7 3.5 80 40-120 2-82 (90)
128 2dnn_A RNA-binding protein 12; 99.7 9.7E-18 3.3E-22 128.5 9.0 78 39-118 16-93 (109)
129 1wel_A RNA-binding protein 12; 99.7 2E-18 6.8E-23 135.0 5.2 82 36-118 22-104 (124)
130 1x4f_A Matrin 3; structural ge 99.7 3.5E-18 1.2E-22 131.4 6.3 82 34-120 20-104 (112)
131 2lcw_A RNA-binding protein FUS 99.6 2.9E-19 9.9E-24 138.1 0.0 85 37-121 5-98 (116)
132 1fjc_A Nucleolin RBD2, protein 99.7 5.6E-18 1.9E-22 126.2 7.0 81 36-120 13-93 (96)
133 1x5p_A Negative elongation fac 99.7 4.9E-17 1.7E-21 121.5 12.0 79 36-121 12-90 (97)
134 1whx_A Hypothetical protein ri 99.7 7.5E-18 2.6E-22 129.4 7.7 77 39-120 10-86 (111)
135 2f3j_A RNA and export factor b 99.7 9.2E-18 3.1E-22 139.5 8.1 84 35-118 84-167 (177)
136 2lmi_A GRSF-1, G-rich sequence 99.7 2.3E-18 7.8E-23 131.3 3.7 83 35-118 7-92 (107)
137 4f02_A Polyadenylate-binding p 99.7 3.7E-17 1.3E-21 139.3 11.6 83 36-118 12-95 (213)
138 2hgn_A Heterogeneous nuclear r 99.7 2.2E-18 7.4E-23 137.8 3.5 83 36-120 43-125 (139)
139 2xs2_A Deleted in azoospermia- 99.7 1.9E-17 6.6E-22 124.7 8.1 81 38-120 8-88 (102)
140 2i2y_A Fusion protein consists 99.7 1.6E-17 5.5E-22 134.0 8.0 81 35-119 69-149 (150)
141 1fj7_A Nucleolin RBD1, protein 99.7 1.5E-18 5.1E-23 130.6 1.7 82 37-120 15-97 (101)
142 3zzy_A Polypyrimidine tract-bi 99.7 6.1E-17 2.1E-21 127.5 10.7 77 39-119 28-107 (130)
143 2e5g_A U6 snRNA-specific termi 99.7 1E-16 3.5E-21 119.0 11.3 79 37-120 6-84 (94)
144 2cq2_A Hypothetical protein LO 99.7 3.1E-17 1E-21 126.4 8.4 84 32-120 18-108 (114)
145 2dha_A FLJ20171 protein; RRM d 99.7 1.4E-17 4.6E-22 130.4 6.3 80 37-117 21-104 (123)
146 1iqt_A AUF1, heterogeneous nuc 99.7 6.1E-18 2.1E-22 120.1 3.9 74 41-115 1-75 (75)
147 3egn_A RNA-binding protein 40; 99.7 2.2E-17 7.4E-22 132.1 7.5 86 35-120 41-132 (143)
148 1wg1_A KIAA1579 protein, homol 99.7 4.7E-17 1.6E-21 119.5 8.3 75 38-118 4-78 (88)
149 1sjr_A Polypyrimidine tract-bi 99.7 5.7E-17 2E-21 132.4 9.4 79 38-119 45-125 (164)
150 2hgm_A HNRPF protein, heteroge 99.7 3E-17 1E-21 128.9 7.3 81 36-118 39-121 (126)
151 3md3_A Nuclear and cytoplasmic 99.7 2.1E-16 7.1E-21 127.9 11.9 82 35-116 83-165 (166)
152 2e44_A Insulin-like growth fac 99.7 4.6E-17 1.6E-21 121.2 7.3 79 37-118 13-92 (96)
153 1fxl_A Paraneoplastic encephal 99.7 2.1E-16 7.2E-21 128.0 11.9 81 39-119 2-83 (167)
154 3d2w_A TAR DNA-binding protein 99.7 1.2E-16 4E-21 117.9 9.3 77 36-120 8-86 (89)
155 1b7f_A Protein (SXL-lethal pro 99.7 1.3E-16 4.4E-21 129.7 10.0 83 38-120 2-85 (168)
156 2e5i_A Heterogeneous nuclear r 99.7 1.7E-16 5.7E-21 124.2 9.8 75 40-119 26-103 (124)
157 3md3_A Nuclear and cytoplasmic 99.7 2E-16 6.9E-21 128.0 10.0 81 40-120 1-81 (166)
158 4f02_A Polyadenylate-binding p 99.7 1.8E-16 6.2E-21 135.0 10.1 79 39-118 103-181 (213)
159 3tyt_A Heterogeneous nuclear r 99.7 2.2E-16 7.4E-21 134.2 10.4 78 37-118 2-80 (205)
160 1wf0_A TDP-43, TAR DNA-binding 99.7 8.1E-17 2.8E-21 118.0 6.6 79 37-121 3-81 (88)
161 2qfj_A FBP-interacting repress 99.7 2.9E-16 1E-20 132.8 10.8 85 37-121 123-208 (216)
162 2yh0_A Splicing factor U2AF 65 99.7 5.1E-16 1.8E-20 129.5 11.8 84 37-120 112-196 (198)
163 2g4b_A Splicing factor U2AF 65 99.7 4.5E-16 1.5E-20 127.0 10.8 80 37-116 92-172 (172)
164 3u1l_A PRE-mRNA-splicing facto 99.7 1.5E-16 5.1E-21 137.9 8.2 80 36-120 131-231 (240)
165 2hzc_A Splicing factor U2AF 65 99.7 2.5E-16 8.7E-21 114.8 8.3 70 38-113 5-85 (87)
166 2diu_A KIAA0430 protein; struc 99.7 2.1E-16 7.1E-21 116.6 7.6 75 37-120 6-86 (96)
167 2j8a_A Histone-lysine N-methyl 99.7 2.7E-16 9.1E-21 122.6 8.5 77 40-116 3-94 (136)
168 1l3k_A Heterogeneous nuclear r 99.7 6.6E-16 2.3E-20 128.7 11.6 84 37-121 102-186 (196)
169 1l3k_A Heterogeneous nuclear r 99.6 6.9E-16 2.4E-20 128.6 11.0 83 36-119 10-93 (196)
170 2bz2_A Negative elongation fac 99.6 3.7E-16 1.3E-20 121.8 8.2 78 36-120 36-113 (121)
171 2pe8_A Splicing factor 45; RRM 99.6 1.4E-15 4.8E-20 115.6 10.9 81 37-117 6-93 (105)
172 3nmr_A Cugbp ELAV-like family 99.6 8.9E-16 3.1E-20 125.3 9.8 79 37-115 93-174 (175)
173 2cjk_A Nuclear polyadenylated 99.6 3E-16 1E-20 127.5 6.4 79 39-118 87-166 (167)
174 2dnl_A Cytoplasmic polyadenyla 99.6 8.5E-16 2.9E-20 118.3 8.3 76 37-115 6-85 (114)
175 1b7f_A Protein (SXL-lethal pro 99.6 1.7E-15 5.8E-20 123.0 10.5 80 36-115 86-168 (168)
176 2voo_A Lupus LA protein; RNA-b 99.6 1.9E-15 6.5E-20 127.2 11.0 78 39-117 109-186 (193)
177 2qfj_A FBP-interacting repress 99.6 1.1E-15 3.7E-20 129.3 8.8 79 39-117 28-107 (216)
178 3pgw_A U1-A; protein-RNA compl 99.6 4.4E-15 1.5E-19 131.1 12.3 77 36-116 204-281 (282)
179 3nmr_A Cugbp ELAV-like family 99.6 1.9E-15 6.4E-20 123.4 9.2 83 38-120 2-90 (175)
180 1fje_B Nucleolin RBD12, protei 99.6 2.3E-15 7.9E-20 123.4 9.0 78 37-118 97-174 (175)
181 1fxl_A Paraneoplastic encephal 99.6 3.3E-15 1.1E-19 120.8 9.7 78 38-115 87-167 (167)
182 3pgw_A U1-A; protein-RNA compl 99.6 5.6E-15 1.9E-19 130.4 11.5 83 35-119 5-91 (282)
183 2adc_A Polypyrimidine tract-bi 99.6 2.3E-15 7.9E-20 129.5 8.0 81 35-119 30-111 (229)
184 2ghp_A U4/U6 snRNA-associated 99.6 4.6E-15 1.6E-19 131.7 10.0 83 35-118 206-291 (292)
185 2cjk_A Nuclear polyadenylated 99.6 4.1E-15 1.4E-19 120.7 8.3 78 38-117 2-80 (167)
186 3smz_A Protein raver-1, ribonu 99.6 1.1E-14 3.8E-19 128.7 11.1 85 36-120 181-266 (284)
187 2dit_A HIV TAT specific factor 99.6 3.1E-14 1.1E-18 109.2 11.9 81 37-120 13-104 (112)
188 1jmt_A Splicing factor U2AF 35 99.6 2.7E-15 9.1E-20 113.9 5.0 73 43-115 19-103 (104)
189 3v4m_A Splicing factor U2AF 65 99.5 1.6E-14 5.5E-19 109.7 8.7 81 38-118 4-97 (105)
190 2adc_A Polypyrimidine tract-bi 99.5 1.6E-14 5.6E-19 124.1 9.0 79 36-118 148-228 (229)
191 3smz_A Protein raver-1, ribonu 99.5 4.1E-14 1.4E-18 125.0 11.8 84 37-120 93-177 (284)
192 1qm9_A Polypyrimidine tract-bi 99.5 5.8E-15 2E-19 123.6 5.9 77 39-119 3-80 (198)
193 1qm9_A Polypyrimidine tract-bi 99.5 8.3E-15 2.8E-19 122.6 6.6 78 37-118 118-197 (198)
194 3sde_A Paraspeckle component 1 99.5 1.1E-14 3.9E-19 127.6 7.6 78 35-117 18-95 (261)
195 3tyt_A Heterogeneous nuclear r 99.5 1.1E-14 3.8E-19 123.5 7.1 79 36-115 120-204 (205)
196 3ue2_A Poly(U)-binding-splicin 99.5 6.3E-14 2.2E-18 108.7 9.5 80 38-117 19-108 (118)
197 2ghp_A U4/U6 snRNA-associated 99.5 3.4E-14 1.1E-18 126.0 8.5 84 37-120 115-199 (292)
198 1fje_B Nucleolin RBD12, protei 99.5 4.3E-15 1.5E-19 121.8 2.5 83 36-119 10-92 (175)
199 2g4b_A Splicing factor U2AF 65 99.5 7.5E-14 2.6E-18 113.7 9.1 75 38-118 3-88 (172)
200 3sde_A Paraspeckle component 1 99.5 8.9E-14 3E-18 121.9 10.0 83 37-119 94-180 (261)
201 2yh0_A Splicing factor U2AF 65 99.5 9.1E-14 3.1E-18 115.8 9.6 76 38-119 3-89 (198)
202 3tht_A Alkylated DNA repair pr 99.4 1.9E-13 6.4E-18 124.4 8.9 79 32-115 11-96 (345)
203 2d9o_A DNAJ (HSP40) homolog, s 99.4 4E-13 1.4E-17 101.1 9.0 67 49-121 27-93 (100)
204 3s6e_A RNA-binding protein 39; 99.4 2.4E-12 8.1E-17 99.1 9.3 77 38-117 6-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.3 1.3E-11 4.4E-16 95.6 8.6 79 33-116 12-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.2 1.6E-11 5.5E-16 89.7 7.4 75 37-119 5-87 (91)
207 3dxb_A Thioredoxin N-terminall 99.1 6.9E-10 2.4E-14 94.6 10.1 82 36-117 121-212 (222)
208 1ufw_A Synaptojanin 2; RNP dom 99.0 1.2E-10 4.1E-15 85.5 4.2 74 35-116 11-93 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.4 8.4E-07 2.9E-11 66.5 8.0 73 37-114 19-96 (117)
210 1wey_A Calcipressin 1; structu 98.1 9.2E-06 3.2E-10 60.5 7.2 76 38-118 4-84 (104)
211 1wwh_A Nucleoporin 35, nucleop 97.8 0.00011 3.7E-09 56.1 8.9 73 36-115 21-94 (119)
212 1uw4_A UPF3X; nonsense mediate 97.6 0.00039 1.3E-08 50.6 9.0 77 40-116 2-86 (91)
213 1whv_A Poly(A)-specific ribonu 97.5 0.00023 7.7E-09 52.2 6.4 54 39-100 16-69 (100)
214 2dhx_A Poly (ADP-ribose) polym 97.5 0.00079 2.7E-08 49.9 9.4 72 38-117 7-83 (104)
215 3ctr_A Poly(A)-specific ribonu 97.4 0.00024 8.3E-09 52.2 6.0 54 40-101 7-60 (101)
216 2l08_A Regulator of nonsense t 96.8 0.0026 9.1E-08 46.6 6.1 77 40-116 10-94 (97)
217 3p3d_A Nucleoporin 53; structu 96.7 0.003 1E-07 48.8 6.2 76 39-116 7-97 (132)
218 3pq1_A Poly(A) RNA polymerase; 96.2 0.0024 8.3E-08 59.9 3.1 56 39-99 53-108 (464)
219 2kn4_A Immunoglobulin G-bindin 95.7 0.007 2.4E-07 47.8 3.5 35 68-103 2-36 (158)
220 3pgw_S U1-70K; protein-RNA com 95.1 0.11 3.7E-06 48.4 9.9 24 86-111 147-170 (437)
221 2i2y_A Fusion protein consists 95.0 0.0049 1.7E-07 48.4 0.5 39 78-117 11-50 (150)
222 3d45_A Poly(A)-specific ribonu 90.6 0.45 1.6E-05 45.0 6.7 55 39-101 440-494 (507)
223 2g0c_A ATP-dependent RNA helic 90.1 0.62 2.1E-05 31.9 5.5 68 41-116 2-75 (76)
224 3lpe_A Putative transcription 58.8 22 0.00076 25.1 5.6 34 66-103 40-73 (92)
225 4e8u_A Putative uncharacterize 55.3 22 0.00076 28.4 5.6 56 41-98 14-81 (172)
226 4eyt_A Telomerase associated p 53.9 56 0.0019 23.2 6.8 57 37-100 10-66 (129)
227 3ts2_A Protein LIN-28 homolog 50.2 2.8 9.5E-05 32.8 -0.5 28 54-88 2-29 (148)
228 3fry_A Probable copper-exporti 47.2 51 0.0017 21.1 5.8 55 40-100 7-61 (73)
229 4bby_A Alkyldihydroxyacetoneph 44.2 14 0.00047 35.9 3.3 55 46-100 350-408 (658)
230 3h7h_B Transcription elongatio 36.8 26 0.00089 25.6 3.0 35 65-103 40-74 (106)
231 3uzu_A Ribosomal RNA small sub 33.6 21 0.0007 30.6 2.4 33 40-72 115-147 (279)
232 1i4w_A Mitochondrial replicati 33.3 28 0.00095 31.1 3.3 22 41-62 144-165 (353)
233 3fut_A Dimethyladenosine trans 32.8 34 0.0012 29.1 3.7 32 39-71 110-141 (271)
234 4a4j_A Pacszia, cation-transpo 32.2 91 0.0031 19.2 5.3 55 40-99 4-61 (69)
235 1wvf_A 4-cresol dehydrogenase 30.8 38 0.0013 31.7 3.9 42 56-97 218-261 (520)
236 2exu_A Transcription initiatio 26.8 38 0.0013 27.7 2.7 27 79-105 148-174 (200)
237 1qyr_A KSGA, high level kasuga 25.7 52 0.0018 27.5 3.5 29 41-69 92-120 (252)
238 3dxs_X Copper-transporting ATP 25.6 1.3E+02 0.0044 18.8 6.4 56 40-100 4-63 (74)
239 3tqs_A Ribosomal RNA small sub 24.8 24 0.00081 29.8 1.2 32 41-72 98-129 (255)
240 3pm9_A Putative oxidoreductase 23.7 83 0.0028 29.1 4.8 47 54-100 201-251 (476)
241 2e7g_A Putative ribosome-bindi 22.8 1.3E+02 0.0045 22.4 5.0 33 63-98 43-76 (129)
242 2uuu_A Alkyldihydroxyacetoneph 21.8 50 0.0017 31.5 2.9 48 54-101 288-339 (584)
243 3ftd_A Dimethyladenosine trans 21.0 44 0.0015 27.8 2.2 27 40-66 96-122 (249)
244 2lfv_A Protein DAMX; cell divi 26.1 21 0.00072 26.1 0.0 62 39-104 25-88 (106)
245 2okq_A Hypothetical protein YB 20.3 2.1E+02 0.0072 21.8 5.5 44 56-99 50-109 (141)
246 2lea_A Serine/arginine-rich sp 20.3 22 0.00074 26.6 0.0 28 81-108 5-32 (135)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.91 E-value=2e-23 Score=196.64 Aligned_cols=85 Identities=25% Similarity=0.497 Sum_probs=78.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
..+.++|||+|||+.||+++|.++|.+||.|+.|.|+.+..+ +++|||||+|.+.++|++||+.|||+.|.|++|.|++
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999999998765 7899999999999999999999999999999999999
Q ss_pred eecCCC
Q 023648 115 VATRGR 120 (279)
Q Consensus 115 a~~~~~ 120 (279)
+.+...
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 987544
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=1e-21 Score=148.19 Aligned_cols=82 Identities=27% Similarity=0.492 Sum_probs=77.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
...+++|||+|||+++|+++|+++|++||+|..|.|+.++.+ .++|||||+|.+.++|++||+.|||..|.|++|.|++
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345789999999999999999999999999999999998776 8999999999999999999999999999999999999
Q ss_pred eec
Q 023648 115 VAT 117 (279)
Q Consensus 115 a~~ 117 (279)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 975
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=3.1e-20 Score=142.74 Aligned_cols=81 Identities=19% Similarity=0.240 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
.+..+|||+|||+.+++++|+++|++||.|..|.|+.+..+ +++|||||+|.+.++|++||+.|||..|.|+.|.|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35679999999999999999999999999999999999886 89999999999999999999999999999999999998
Q ss_pred ec
Q 023648 116 AT 117 (279)
Q Consensus 116 ~~ 117 (279)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 54
No 4
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.83 E-value=4e-20 Score=150.27 Aligned_cols=89 Identities=21% Similarity=0.391 Sum_probs=81.6
Q ss_pred cCCCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEE
Q 023648 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (279)
Q Consensus 33 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~ 111 (279)
.....+.++|||+|||+.+++++|+++|++||.|..|.|+.+..+ ..+|||||+|.+.++|++||+.|++..|.|++|+
T Consensus 33 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 112 (156)
T 1h2v_Z 33 EKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR 112 (156)
T ss_dssp CTTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 344567899999999999999999999999999999999999876 7899999999999999999999999999999999
Q ss_pred EEEeecCCCC
Q 023648 112 VSEVATRGRK 121 (279)
Q Consensus 112 V~~a~~~~~~ 121 (279)
|+++.+....
T Consensus 113 V~~a~~~~~~ 122 (156)
T 1h2v_Z 113 TDWDAGFKEG 122 (156)
T ss_dssp EEEESCCCTT
T ss_pred EEECCCCCCc
Confidence 9999876543
No 5
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.82 E-value=2e-20 Score=146.56 Aligned_cols=88 Identities=24% Similarity=0.390 Sum_probs=80.7
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 34 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.+..+ .++|||||+|.+.++|++||+.|+|..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34456789999999999999999999999999999999988755 78999999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 023648 113 SEVATRGRK 121 (279)
Q Consensus 113 ~~a~~~~~~ 121 (279)
+++.+....
T Consensus 97 ~~a~~~~~~ 105 (126)
T 3ex7_B 97 DWCFVRGPP 105 (126)
T ss_dssp EESEESSSC
T ss_pred EEecCCCCC
Confidence 999877654
No 6
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=6.6e-20 Score=136.38 Aligned_cols=85 Identities=34% Similarity=0.661 Sum_probs=79.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
.+.++|||+|||..+++++|+++|++||.|..|.|+.+..+ +++|||||+|.+.++|++||+.|+|..|.|++|.|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45789999999999999999999999999999999998765 88999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 023648 116 ATRGRK 121 (279)
Q Consensus 116 ~~~~~~ 121 (279)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876554
No 7
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=6.3e-20 Score=134.16 Aligned_cols=82 Identities=29% Similarity=0.536 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
.+.++|||+|||..+++++|+++|++||.|..|.|+.+..+ ..+|||||+|.+.++|++||+.|+|..|.|+.|.|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45679999999999999999999999999999999998655 88999999999999999999999999999999999999
Q ss_pred ecC
Q 023648 116 ATR 118 (279)
Q Consensus 116 ~~~ 118 (279)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 765
No 8
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.3e-20 Score=137.76 Aligned_cols=87 Identities=22% Similarity=0.423 Sum_probs=80.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+ ..+|||||+|.+.++|++||+.|+|..|.|+.|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3456789999999999999999999999999999999998755 889999999999999999999999999999999999
Q ss_pred EeecCCCC
Q 023648 114 EVATRGRK 121 (279)
Q Consensus 114 ~a~~~~~~ 121 (279)
++.+....
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99876553
No 9
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1e-19 Score=136.40 Aligned_cols=86 Identities=27% Similarity=0.517 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+.+..+ ..+|||||+|.+.++|++||+.|+|..|.|++|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346789999999999999999999999999999999988755 8899999999999999999999999999999999999
Q ss_pred eecCCCC
Q 023648 115 VATRGRK 121 (279)
Q Consensus 115 a~~~~~~ 121 (279)
+.+....
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9887654
No 10
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.82 E-value=1.4e-19 Score=131.22 Aligned_cols=81 Identities=26% Similarity=0.545 Sum_probs=75.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
+++|||+|||+.+++++|.++|++||.|..|.|+.+..+ .++|||||+|.+.++|++|++.|+|..|.|++|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 368999999999999999999999999999999988655 8899999999999999999999999999999999999986
Q ss_pred CC
Q 023648 118 RG 119 (279)
Q Consensus 118 ~~ 119 (279)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 11
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=5.7e-20 Score=138.94 Aligned_cols=87 Identities=36% Similarity=0.559 Sum_probs=80.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.+..+ ..+|||||+|.+.++|++||+.|+|..|.|+.|.|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4456789999999999999999999999999999999988775 789999999999999999999999999999999999
Q ss_pred EeecCCCC
Q 023648 114 EVATRGRK 121 (279)
Q Consensus 114 ~a~~~~~~ 121 (279)
++.+....
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dnm_A 89 VARYGRRD 96 (103)
T ss_dssp ECSSCCSC
T ss_pred ECCcCCCC
Confidence 99876543
No 12
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=135.89 Aligned_cols=85 Identities=21% Similarity=0.476 Sum_probs=79.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.+|||||+|.+.++|++||+.|++..|.|++|.|+++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34568999999999999999999999999999999999885588999999999999999999999999999999999999
Q ss_pred ecCCC
Q 023648 116 ATRGR 120 (279)
Q Consensus 116 ~~~~~ 120 (279)
.++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87654
No 13
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.81 E-value=3.7e-19 Score=137.11 Aligned_cols=87 Identities=28% Similarity=0.522 Sum_probs=80.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
...+.++|||+|||+.+++++|+++|.+||.|..|.|+.+..+ ..+|||||+|.+.++|++||+.|+|..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4456789999999999999999999999999999999998755 889999999999999999999999999999999999
Q ss_pred EeecCCCC
Q 023648 114 EVATRGRK 121 (279)
Q Consensus 114 ~a~~~~~~ 121 (279)
++.+....
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 99876554
No 14
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=140.95 Aligned_cols=85 Identities=31% Similarity=0.665 Sum_probs=79.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.+..+..+|||||+|.+.++|++||+.|+|..|.|+.|.|+++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 45678999999999999999999999999999999999885588999999999999999999999999999999999999
Q ss_pred ecCCC
Q 023648 116 ATRGR 120 (279)
Q Consensus 116 ~~~~~ 120 (279)
.+...
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87654
No 15
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.9e-20 Score=136.22 Aligned_cols=85 Identities=27% Similarity=0.480 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEE-EEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAV-KIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v-~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
.+.++|||+|||+.+++++|+++|++||.|..| .|+.++.+ ..+|||||+|.+.++|++||+.|+|..|.|++|.|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 99988555 7899999999999999999999999999999999999
Q ss_pred eecCCCC
Q 023648 115 VATRGRK 121 (279)
Q Consensus 115 a~~~~~~ 121 (279)
+.+....
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876543
No 16
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.6e-20 Score=138.08 Aligned_cols=87 Identities=30% Similarity=0.477 Sum_probs=80.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.+..+ ..+|||||+|.+.++|++||+.|++..|.|++|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456789999999999999999999999999999999998755 889999999999999999999999999999999999
Q ss_pred EeecCCCC
Q 023648 114 EVATRGRK 121 (279)
Q Consensus 114 ~a~~~~~~ 121 (279)
++.+....
T Consensus 91 ~a~~~~~~ 98 (105)
T 1x5u_A 91 KASAHNKN 98 (105)
T ss_dssp ETTTTSCC
T ss_pred ECCCCCcC
Confidence 99876553
No 17
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=136.76 Aligned_cols=86 Identities=27% Similarity=0.550 Sum_probs=79.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
...+.++|||+|||+.+++++|+++|.+||.|..|.|+.+ .+..+|||||+|.+.++|++||+.|++..|.|++|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456789999999999999999999999999999999988 557899999999999999999999999999999999999
Q ss_pred eecCCCC
Q 023648 115 VATRGRK 121 (279)
Q Consensus 115 a~~~~~~ 121 (279)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2d9p_A 90 AQRKEER 96 (103)
T ss_dssp CSSCCCC
T ss_pred ecccccC
Confidence 9876553
No 18
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.8e-20 Score=137.85 Aligned_cols=86 Identities=27% Similarity=0.466 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+.+..+ +.+|||||+|.+.++|++||+.|++..|.|++|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 346789999999999999999999999999999999988665 7899999999999999999999999999999999999
Q ss_pred eecCCCC
Q 023648 115 VATRGRK 121 (279)
Q Consensus 115 a~~~~~~ 121 (279)
+.+....
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9877654
No 19
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=135.48 Aligned_cols=85 Identities=32% Similarity=0.590 Sum_probs=78.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
..+.++|||+|||..+++++|+++|.+||.|..|.|+.++.+ ..+|||||+|.+.++|++||+ |++..|.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999998765 789999999999999999999 999999999999999
Q ss_pred eecCCCC
Q 023648 115 VATRGRK 121 (279)
Q Consensus 115 a~~~~~~ 121 (279)
+.++...
T Consensus 86 a~~~~~~ 92 (99)
T 2dgs_A 86 AEPRDSK 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCccc
Confidence 9876554
No 20
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.81 E-value=9.8e-20 Score=140.79 Aligned_cols=81 Identities=28% Similarity=0.535 Sum_probs=74.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeecC
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~~ 118 (279)
.++|||+|||+.+++++|+++|++||.|..|.|+.+..+ ++|||||+|.+.++|++||+.|+|..|.|++|.|.++.++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~-~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE-EEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCC-CCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 468999999999999999999999999999999988644 7899999999999999999999999999999999998765
Q ss_pred CC
Q 023648 119 GR 120 (279)
Q Consensus 119 ~~ 120 (279)
..
T Consensus 84 ~~ 85 (115)
T 4f25_A 84 KE 85 (115)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 21
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.8e-19 Score=134.34 Aligned_cols=86 Identities=24% Similarity=0.528 Sum_probs=78.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
...+.++|||+|||+.+++++|+++|.+||.|..|.|+.+..+ .+|||||+|.+.++|++||..|++..|.|+.|.|++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999999999987655 789999999999999999999999999999999999
Q ss_pred eecCCCC
Q 023648 115 VATRGRK 121 (279)
Q Consensus 115 a~~~~~~ 121 (279)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9887654
No 22
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=135.06 Aligned_cols=85 Identities=24% Similarity=0.523 Sum_probs=78.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCC---C-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRS---T-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~---~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.+.. + ..+|||||+|.+.++|++||+.|+|..|.|++|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4578999999999999999999999999999999998765 3 68899999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 023648 113 SEVATRGRK 121 (279)
Q Consensus 113 ~~a~~~~~~ 121 (279)
+++.+....
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876553
No 23
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3e-19 Score=134.92 Aligned_cols=85 Identities=28% Similarity=0.468 Sum_probs=78.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.+..+ .+|||||+|.+.++|++||..|++..|.|+.|.|++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3456789999999999999999999999999999999988655 689999999999999999999999999999999999
Q ss_pred eecCCC
Q 023648 115 VATRGR 120 (279)
Q Consensus 115 a~~~~~ 120 (279)
+.+...
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 987654
No 24
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=1.6e-19 Score=139.18 Aligned_cols=86 Identities=29% Similarity=0.534 Sum_probs=79.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+.+..+ ..+|||||+|.+.++|++||+.|++..|.|++|.|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999999998755 8899999999999999999999999999999999999
Q ss_pred eecCCCC
Q 023648 115 VATRGRK 121 (279)
Q Consensus 115 a~~~~~~ 121 (279)
+.++...
T Consensus 102 a~~~~~~ 108 (115)
T 2cpz_A 102 KRSKNDS 108 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCcC
Confidence 9876553
No 25
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.81 E-value=3.3e-19 Score=141.91 Aligned_cols=87 Identities=33% Similarity=0.543 Sum_probs=80.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
...+.++|||+|||..+++++|+++|++||.|..|.|+.++.+ +.+|||||+|.+.++|++||+.|+|..|.|+.|.|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3455689999999999999999999999999999999998766 789999999999999999999999999999999999
Q ss_pred EeecCCCC
Q 023648 114 EVATRGRK 121 (279)
Q Consensus 114 ~a~~~~~~ 121 (279)
++.+....
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876554
No 26
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.81 E-value=2.3e-20 Score=138.49 Aligned_cols=81 Identities=21% Similarity=0.368 Sum_probs=74.6
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCC-CEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcC-CcEECCeEEEEEEee
Q 023648 40 SSVYVGGLPYSANEDSVRKVFDKYG-SVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN-GRTIDGRVVRVSEVA 116 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~-g~~i~gr~i~V~~a~ 116 (279)
.+|||+|||+.+|+++|+++|++|| .|..|.|+.++.+ .++|||||+|.+.++|++||+.|+ +..|+|++|.|+++.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999999999999999999999 8999999998876 899999999999999999999874 567999999999998
Q ss_pred cCCC
Q 023648 117 TRGR 120 (279)
Q Consensus 117 ~~~~ 120 (279)
++..
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7654
No 27
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.2e-19 Score=136.04 Aligned_cols=84 Identities=24% Similarity=0.495 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCC--CCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRS--TRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
..+.++|||+|||+.+++++|+++|.+|| |..|.|+.+.. +..+|||||+|.+.++|++|| .|++..|.|+.|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34568999999999999999999999999 99999998876 478999999999999999999 899999999999999
Q ss_pred EeecCCCC
Q 023648 114 EVATRGRK 121 (279)
Q Consensus 114 ~a~~~~~~ 121 (279)
++.++...
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99876654
No 28
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.9e-19 Score=134.61 Aligned_cols=83 Identities=18% Similarity=0.298 Sum_probs=77.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHH----HHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVR----KVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~ 111 (279)
....++|||+|||+.+++++|+ ++|++||.|..|.|+.+..+ +|||||+|.+.++|++||+.|||..|.|++|+
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 4456799999999999999999 99999999999999988776 88999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 023648 112 VSEVATRGR 120 (279)
Q Consensus 112 V~~a~~~~~ 120 (279)
|+++.+...
T Consensus 84 V~~a~~~~~ 92 (96)
T 2dgx_A 84 VSLATGASG 92 (96)
T ss_dssp EEECCCSSC
T ss_pred EEEcCCCCC
Confidence 999977654
No 29
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1e-19 Score=137.15 Aligned_cols=86 Identities=43% Similarity=0.798 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.+..+ ..+|||||+|.+.++|++||+.||+..|.|++|.|++
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 446789999999999999999999999999999999988766 7899999999999999999999999999999999999
Q ss_pred eecCCCC
Q 023648 115 VATRGRK 121 (279)
Q Consensus 115 a~~~~~~ 121 (279)
+.+....
T Consensus 89 a~~~~~~ 95 (102)
T 1x5s_A 89 AGKSSDN 95 (102)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
Confidence 9876553
No 30
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.80 E-value=2.8e-19 Score=135.48 Aligned_cols=85 Identities=20% Similarity=0.331 Sum_probs=79.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECC---eEEEEE
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG---RVVRVS 113 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~g---r~i~V~ 113 (279)
.+.++|||+|||+.+++++|+++|.+||.|..|.|+.+..+.++|||||+|.+.++|++||+.|+|..|.| ++|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 45789999999999999999999999999999999998866889999999999999999999999999998 999999
Q ss_pred EeecCCCC
Q 023648 114 EVATRGRK 121 (279)
Q Consensus 114 ~a~~~~~~ 121 (279)
++.+....
T Consensus 93 ~a~~~~~~ 100 (105)
T 2dnh_A 93 FADTDKES 100 (105)
T ss_dssp ESCSSCCC
T ss_pred ECccCccc
Confidence 99876653
No 31
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=2.1e-19 Score=134.13 Aligned_cols=82 Identities=26% Similarity=0.558 Sum_probs=77.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEee
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~ 116 (279)
+.++|||+|||..+++++|+++|++||.|..|.|+.+..+ ..+|||||+|.+.++|++||+.|+|..|+|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 4679999999999999999999999999999999988765 789999999999999999999999999999999999997
Q ss_pred cCC
Q 023648 117 TRG 119 (279)
Q Consensus 117 ~~~ 119 (279)
+..
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 754
No 32
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.80 E-value=3e-19 Score=135.79 Aligned_cols=83 Identities=22% Similarity=0.434 Sum_probs=77.8
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 34 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
....+.++|||+|||+.+++++|+++|.+||.|..|.|+.+..+..+|||||+|.+.++|++||+.|+|..|.|+.|.|+
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567889999999999999999999999999999999999855889999999999999999999999999999999999
Q ss_pred Eee
Q 023648 114 EVA 116 (279)
Q Consensus 114 ~a~ 116 (279)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 33
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.80 E-value=1.6e-19 Score=131.39 Aligned_cols=80 Identities=28% Similarity=0.511 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.+..+ ..+|||||+|.+.++|++||+.|+|..|.|++|.|+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999988655 78999999999999999999999999999999999987
Q ss_pred e
Q 023648 116 A 116 (279)
Q Consensus 116 ~ 116 (279)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 34
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=4.6e-19 Score=134.02 Aligned_cols=85 Identities=24% Similarity=0.492 Sum_probs=77.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
...+.++|||+|||+.+++++|+++|++|| |..|.|+.+..+ +.+|||||+|.+.++|++|| .|++..|.|+.|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 344578999999999999999999999997 999999998875 88999999999999999999 899999999999999
Q ss_pred EeecCCCC
Q 023648 114 EVATRGRK 121 (279)
Q Consensus 114 ~a~~~~~~ 121 (279)
++.+....
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dng_A 89 IAEGRKQD 96 (103)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 99876543
No 35
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.7e-19 Score=136.84 Aligned_cols=87 Identities=22% Similarity=0.471 Sum_probs=80.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcC------CcEECC
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN------GRTIDG 107 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~------g~~i~g 107 (279)
...+.++|||+|||+.+++++|+++|.+||.|..|.|+.+..+ ..+|||||+|.+.++|++||..|+ +..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 3456789999999999999999999999999999999998776 789999999999999999999999 999999
Q ss_pred eEEEEEEeecCCCC
Q 023648 108 RVVRVSEVATRGRK 121 (279)
Q Consensus 108 r~i~V~~a~~~~~~ 121 (279)
+.|.|.++.++...
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999876553
No 36
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.6e-19 Score=135.35 Aligned_cols=78 Identities=22% Similarity=0.321 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECC-----eEEE
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG-----RVVR 111 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~g-----r~i~ 111 (279)
...++|||+|||+.+++++|+++|.+||.|+.|.|+.+ |||||+|.+.++|++||+.||+..|.| +.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 45689999999999999999999999999999999875 799999999999999999999999999 9999
Q ss_pred EEEeecCCC
Q 023648 112 VSEVATRGR 120 (279)
Q Consensus 112 V~~a~~~~~ 120 (279)
|+++.++..
T Consensus 87 V~~a~~~~~ 95 (108)
T 1x4c_A 87 VKVDGPRSP 95 (108)
T ss_dssp EEESSCCSC
T ss_pred EEeCCCCCC
Confidence 999987543
No 37
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.1e-19 Score=133.53 Aligned_cols=82 Identities=37% Similarity=0.570 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.+..+ ..+|||||+|.+.++|++||+.|+|..|.|++|.|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 445679999999999999999999999999999999998776 7899999999999999999999999999999999998
Q ss_pred eec
Q 023648 115 VAT 117 (279)
Q Consensus 115 a~~ 117 (279)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 38
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.7e-19 Score=136.86 Aligned_cols=85 Identities=25% Similarity=0.411 Sum_probs=79.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.+..+ ..+|||||+|.+.++|++||..|+|..|.|+.|.|++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 345679999999999999999999999999999999998775 7899999999999999999999999999999999999
Q ss_pred eecCCC
Q 023648 115 VATRGR 120 (279)
Q Consensus 115 a~~~~~ 120 (279)
+.+++.
T Consensus 100 a~~~~~ 105 (106)
T 1p27_B 100 CFVRGP 105 (106)
T ss_dssp SEESSC
T ss_pred ecCCCC
Confidence 987653
No 39
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=131.47 Aligned_cols=82 Identities=27% Similarity=0.531 Sum_probs=76.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-C-CceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-R-GKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~-~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
..++|||+|||+.+++++|+++|++||.|..|.|+.+..+ . .+|||||+|.+.++|++|++.|||..|+|+.|.|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 4679999999999999999999999999999999988765 3 7899999999999999999999999999999999999
Q ss_pred ecCC
Q 023648 116 ATRG 119 (279)
Q Consensus 116 ~~~~ 119 (279)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 40
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3e-19 Score=132.56 Aligned_cols=81 Identities=33% Similarity=0.607 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.+..+ .++|||||+|.+.++|++||+.|++..|.|++|.|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 345679999999999999999999999999999999998775 7899999999999999999999999999999999998
Q ss_pred ee
Q 023648 115 VA 116 (279)
Q Consensus 115 a~ 116 (279)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 41
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=7.4e-19 Score=135.12 Aligned_cols=85 Identities=28% Similarity=0.360 Sum_probs=78.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.+|||||+|.+.++|++||+.|++..|.|+.|.|+++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 45578999999999999999999999999999999999887788999999999999999999999999999999999998
Q ss_pred ecCCC
Q 023648 116 ATRGR 120 (279)
Q Consensus 116 ~~~~~ 120 (279)
.....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 76443
No 42
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.80 E-value=2.6e-19 Score=133.13 Aligned_cols=82 Identities=32% Similarity=0.529 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.+..++++|||||+|.+.++|++||+.|++..|.|++|.|+++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 34567999999999999999999999999999999999887788999999999999999999999999999999999987
Q ss_pred ec
Q 023648 116 AT 117 (279)
Q Consensus 116 ~~ 117 (279)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 43
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.2e-19 Score=135.09 Aligned_cols=85 Identities=31% Similarity=0.552 Sum_probs=76.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
...+.++|||+|||+.+++++|+++|.+||.|..|.|+.+. ..+|||||+|.+.++|++||+.|++..|.|+.|.|++
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR--GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS--SSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34567899999999999999999999999999999996543 4789999999999999999999999999999999999
Q ss_pred eecCCCC
Q 023648 115 VATRGRK 121 (279)
Q Consensus 115 a~~~~~~ 121 (279)
+.+....
T Consensus 96 a~~~~~~ 102 (109)
T 1x4a_A 96 PRSGRGT 102 (109)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 9876543
No 44
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.4e-19 Score=135.41 Aligned_cols=86 Identities=22% Similarity=0.439 Sum_probs=78.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeC-CCC-CCceEEEEEEcChHHHHHHHHhc-CCcEECCeEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVND-RST-RGKCYGFVTFGNPRSAVDAINDM-NGRTIDGRVVRV 112 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d-~~~-~~~g~afV~f~~~~~A~~Al~~l-~g~~i~gr~i~V 112 (279)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+.+ ..+ ..+|||||+|.+.++|++||..| ++..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 445789999999999999999999999999999999988 444 78999999999999999999999 999999999999
Q ss_pred EEeecCCCC
Q 023648 113 SEVATRGRK 121 (279)
Q Consensus 113 ~~a~~~~~~ 121 (279)
+++.+....
T Consensus 92 ~~a~~~~~~ 100 (107)
T 2cph_A 92 EWADSEVTV 100 (107)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999876553
No 45
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=9.6e-19 Score=135.06 Aligned_cols=84 Identities=33% Similarity=0.602 Sum_probs=77.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.+ +.+|||||+|.+.++|++||+.|++ .|.|+.|.|++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 445789999999999999999999999999999999998765 8899999999999999999999998 89999999999
Q ss_pred eecCCC
Q 023648 115 VATRGR 120 (279)
Q Consensus 115 a~~~~~ 120 (279)
+.....
T Consensus 93 a~~~~~ 98 (116)
T 2cqd_A 93 AYLGAK 98 (116)
T ss_dssp STTTCC
T ss_pred cccCCC
Confidence 976544
No 46
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.80 E-value=3.2e-19 Score=136.39 Aligned_cols=85 Identities=25% Similarity=0.413 Sum_probs=78.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.+..+ .++|||||+|.+.++|++||..|+|..|.|++|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 445679999999999999999999999999999999988765 7899999999999999999999999999999999999
Q ss_pred eecCCC
Q 023648 115 VATRGR 120 (279)
Q Consensus 115 a~~~~~ 120 (279)
+.++..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 987654
No 47
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=6.5e-20 Score=137.27 Aligned_cols=79 Identities=18% Similarity=0.378 Sum_probs=72.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCC--EEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCc----EECCeEEE
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGS--VVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGR----TIDGRVVR 111 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~--I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~----~i~gr~i~ 111 (279)
-.||||+|||+.+|+++|.++|++||. |..|.|+.++.+ .++|||||+|.+.++|++||+.|||. .|+|++|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 359999999999999999999999996 568999998876 89999999999999999999999997 59999999
Q ss_pred EEEeec
Q 023648 112 VSEVAT 117 (279)
Q Consensus 112 V~~a~~ 117 (279)
|++|+.
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999864
No 48
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=134.73 Aligned_cols=86 Identities=24% Similarity=0.455 Sum_probs=79.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEE-EEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeE---
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVV-AVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRV--- 109 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~-~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~--- 109 (279)
...+.++|||+|||+.+++++|+++|++||.|. .|.|+.++.+ ..+|||||+|.+.++|++||+.|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345678999999999999999999999999999 9999998766 88999999999999999999999999999999
Q ss_pred -EEEEEeecCCC
Q 023648 110 -VRVSEVATRGR 120 (279)
Q Consensus 110 -i~V~~a~~~~~ 120 (279)
|+|+++.+...
T Consensus 85 ~l~v~~a~~~~~ 96 (99)
T 2div_A 85 RFKLNYATYSGP 96 (99)
T ss_dssp ECCEEETTCCSS
T ss_pred eEEEeecCCCCC
Confidence 99999976544
No 49
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=3.3e-19 Score=134.83 Aligned_cols=85 Identities=27% Similarity=0.425 Sum_probs=78.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhcc-CCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcE-ECCeEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDK-YGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRT-IDGRVVRVS 113 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~-i~gr~i~V~ 113 (279)
..+.++|||+|||+.+++++|+++|.+ ||.|..|.|+.+..+..+|||||+|.+.++|++||+.|++.. |.|++|.|+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 356789999999999999999999999 999999999999855899999999999999999999999999 999999999
Q ss_pred EeecCCC
Q 023648 114 EVATRGR 120 (279)
Q Consensus 114 ~a~~~~~ 120 (279)
++.+...
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9976654
No 50
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.79 E-value=7e-19 Score=136.15 Aligned_cols=83 Identities=29% Similarity=0.536 Sum_probs=76.4
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 34 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+ +.+|||||+|.+.++|++||+.|||..|+|++|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999988665 88999999999999999999999999999999999
Q ss_pred EEee
Q 023648 113 SEVA 116 (279)
Q Consensus 113 ~~a~ 116 (279)
++++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9874
No 51
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.7e-19 Score=136.69 Aligned_cols=87 Identities=26% Similarity=0.407 Sum_probs=79.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEE--------EEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVV--------AVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTI 105 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~--------~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i 105 (279)
...+.++|||+|||+.+++++|+++|.+||.|. .|.|+.++.+ +.+|||||+|.+.++|++||+.|+|..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999999 6999988665 8899999999999999999999999999
Q ss_pred CCeEEEEEEeecCCCC
Q 023648 106 DGRVVRVSEVATRGRK 121 (279)
Q Consensus 106 ~gr~i~V~~a~~~~~~ 121 (279)
.|+.|.|+++.+....
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999876553
No 52
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.79 E-value=2.4e-19 Score=136.07 Aligned_cols=87 Identities=21% Similarity=0.446 Sum_probs=79.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEE---CCeEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTI---DGRVV 110 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i---~gr~i 110 (279)
...+.++|||+|||..+++++|+++|++||.|..|.|+.++.+ +.+|||||+|.+.++|++||+.|++..| .|++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 3456789999999999999999999999999999999998775 7899999999999999999999999998 89999
Q ss_pred EEEEeecCCCC
Q 023648 111 RVSEVATRGRK 121 (279)
Q Consensus 111 ~V~~a~~~~~~ 121 (279)
.|.++.+....
T Consensus 89 ~v~~a~~~~~~ 99 (106)
T 2dgp_A 89 QVKPADSESRG 99 (106)
T ss_dssp EEEECCCCSCC
T ss_pred EEEECCccccc
Confidence 99999876543
No 53
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.79 E-value=2.8e-19 Score=134.18 Aligned_cols=82 Identities=28% Similarity=0.463 Sum_probs=76.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEE--------EEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVA--------VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTI 105 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i 105 (279)
...+.++|||+|||+.+++++|+++|++||.|.. |.|+.++.+ ..+|||||+|.+.++|++||+.|+|..|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3455789999999999999999999999999999 999998765 8899999999999999999999999999
Q ss_pred CCeEEEEEEee
Q 023648 106 DGRVVRVSEVA 116 (279)
Q Consensus 106 ~gr~i~V~~a~ 116 (279)
.|+.|.|++|+
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999874
No 54
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.79 E-value=7.2e-19 Score=144.33 Aligned_cols=87 Identities=25% Similarity=0.415 Sum_probs=78.7
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
...+.++|||+|||+.+++++|+.+|.+||.|..|.|+.++.+ .++|||||+|.+.++|++||..|||..|.|++|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999998766 789999999999999999999999999999999999
Q ss_pred EeecCCCC
Q 023648 114 EVATRGRK 121 (279)
Q Consensus 114 ~a~~~~~~ 121 (279)
++.+....
T Consensus 148 ~a~~~~~~ 155 (165)
T 1rk8_A 148 WCFVKGPK 155 (165)
T ss_dssp ESEECC--
T ss_pred EecCCCCC
Confidence 99876653
No 55
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=5.4e-19 Score=135.70 Aligned_cols=85 Identities=27% Similarity=0.371 Sum_probs=77.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHH---HHhccCCCEEEEEEeeCCCC----CCceEEEEEEcChHHHHHHHHhcCCcEECC
Q 023648 35 TIDDESSVYVGGLPYSANEDSVR---KVFDKYGSVVAVKIVNDRST----RGKCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~---~~F~~~G~I~~v~i~~d~~~----~~~g~afV~f~~~~~A~~Al~~l~g~~i~g 107 (279)
...+..+|||+|||+.+++++|. ++|.+||+|..|.|+.+..+ .++|||||+|.+.++|++||+.|||..|.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34456799999999999999999 99999999999999988654 466999999999999999999999999999
Q ss_pred eEEEEEEeecCC
Q 023648 108 RVVRVSEVATRG 119 (279)
Q Consensus 108 r~i~V~~a~~~~ 119 (279)
++|.|+++.++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998765
No 56
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=2.5e-19 Score=137.07 Aligned_cols=85 Identities=32% Similarity=0.650 Sum_probs=78.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
...+.++|||+|||..+++++|+++|++||.|..|.|+.+..+ .++|||||+|.+.++|+.||+.|+|..|.|++|.|+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999988665 789999999999999999999999999999999999
Q ss_pred EeecCC
Q 023648 114 EVATRG 119 (279)
Q Consensus 114 ~a~~~~ 119 (279)
++.++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 987653
No 57
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.79 E-value=1.5e-18 Score=131.27 Aligned_cols=79 Identities=25% Similarity=0.525 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
+.+.++|||+|||+.+++++|+++|.+||.|..|.|+ ++||||+|.+.++|++||+.|++..|.|++|.|+++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 4567899999999999999999999999999999986 459999999999999999999999999999999999
Q ss_pred ecCCCC
Q 023648 116 ATRGRK 121 (279)
Q Consensus 116 ~~~~~~ 121 (279)
.+....
T Consensus 81 ~~~~~~ 86 (103)
T 2dgu_A 81 KPPDQK 86 (103)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 876554
No 58
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.78 E-value=9.9e-19 Score=128.30 Aligned_cols=79 Identities=25% Similarity=0.485 Sum_probs=74.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
.++|||+|||+.+++++|+++|++||.|..|.|+.+..+ .++|||||+|.+.++|++|| .|+|..|.|+.|.|+++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 369999999999999999999999999999999998755 88999999999999999999 8999999999999999876
Q ss_pred C
Q 023648 118 R 118 (279)
Q Consensus 118 ~ 118 (279)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 59
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.9e-19 Score=136.07 Aligned_cols=85 Identities=25% Similarity=0.546 Sum_probs=77.9
Q ss_pred cCCCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 33 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
.....+.++|||+|||..+++++|+++|++||.|..|.|+.+.. ..+|||||+|.+.++|++|+..|+|..|+|+.|.|
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 44556778999999999999999999999999999999998754 37899999999999999999999999999999999
Q ss_pred EEeecC
Q 023648 113 SEVATR 118 (279)
Q Consensus 113 ~~a~~~ 118 (279)
+++.++
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 999765
No 60
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.78 E-value=6.7e-19 Score=130.12 Aligned_cols=84 Identities=24% Similarity=0.390 Sum_probs=77.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+.+ .+..+|||||+|.+.++|++||+.|++..|.|+.|.|+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 346789999999999999999999999999999999874 4478999999999999999999999999999999999999
Q ss_pred ecCCC
Q 023648 116 ATRGR 120 (279)
Q Consensus 116 ~~~~~ 120 (279)
.+...
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 87654
No 61
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=1.6e-18 Score=126.87 Aligned_cols=80 Identities=28% Similarity=0.608 Sum_probs=73.7
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.+..+ .++|||||+|.+.++|++||+ +++..|+|+.|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999998765 889999999999999999997 58899999999998
Q ss_pred Ee
Q 023648 114 EV 115 (279)
Q Consensus 114 ~a 115 (279)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 62
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=6.4e-19 Score=133.60 Aligned_cols=85 Identities=31% Similarity=0.658 Sum_probs=78.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.+ ..+|||||+|.+.++|++||.. ++..|.|+.|.|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 455789999999999999999999999999999999998765 8899999999999999999998 99999999999999
Q ss_pred eecCCCC
Q 023648 115 VATRGRK 121 (279)
Q Consensus 115 a~~~~~~ 121 (279)
+.++...
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 9876553
No 63
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=4.8e-19 Score=129.47 Aligned_cols=75 Identities=11% Similarity=0.107 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEee
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~ 116 (279)
.....|||+||++.+|+++|+++|.+||+|..+.|+. ++|||||+|.+.++|++|++.||+..|.|++|.|++|.
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 3467899999999999999999999999999999976 68999999999999999999999999999999999884
No 64
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.78 E-value=1.1e-18 Score=136.36 Aligned_cols=86 Identities=21% Similarity=0.405 Sum_probs=79.7
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.+..+..+|||||+|.+.++|++||..|+|..|.|+.|.|++
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45667899999999999999999999999999999999988558899999999999999999999999999999999999
Q ss_pred eecCCC
Q 023648 115 VATRGR 120 (279)
Q Consensus 115 a~~~~~ 120 (279)
+.+...
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 977544
No 65
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.78 E-value=8.1e-20 Score=134.95 Aligned_cols=81 Identities=16% Similarity=0.395 Sum_probs=70.7
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCC--CEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEee
Q 023648 40 SSVYVGGLPYSANEDSVRKVFDKYG--SVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~ 116 (279)
.+|||+|||+.+++++|+++|++|| .|..|.|+.++.+ .++|||||+|.+.++|++||+.|||..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 9999999998766 889999999999999999999999999999999999998
Q ss_pred cCCC
Q 023648 117 TRGR 120 (279)
Q Consensus 117 ~~~~ 120 (279)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7654
No 66
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.78 E-value=8e-19 Score=143.06 Aligned_cols=81 Identities=22% Similarity=0.440 Sum_probs=75.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCC--CEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYG--SVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
..++|||+|||+.+++++|+++|++|| .|..|.|+.++.+ .++|||||+|.+.++|++||..|+|..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 467999999999999999999999999 9999999999766 8999999999999999999999999999999999999
Q ss_pred eecC
Q 023648 115 VATR 118 (279)
Q Consensus 115 a~~~ 118 (279)
+.+.
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9653
No 67
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.78 E-value=1.3e-19 Score=136.59 Aligned_cols=80 Identities=23% Similarity=0.368 Sum_probs=75.8
Q ss_pred CCeEEEcCCCC------CCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECC-eEE
Q 023648 39 ESSVYVGGLPY------SANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDG-RVV 110 (279)
Q Consensus 39 ~~~l~V~nLp~------~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~g-r~i 110 (279)
.++|||+|||+ .+++++|.++|++||.|..|.|+.+..+ +++|||||+|.+.++|++||+.|||..|.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 56999999999 9999999999999999999999999875 899999999999999999999999999999 999
Q ss_pred EEEEeecC
Q 023648 111 RVSEVATR 118 (279)
Q Consensus 111 ~V~~a~~~ 118 (279)
.|.++.+.
T Consensus 86 ~V~~a~~~ 93 (100)
T 3ns6_A 86 FLYTMKDV 93 (100)
T ss_dssp EEEESHHH
T ss_pred EEEECchh
Confidence 99999764
No 68
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5e-19 Score=134.52 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcC--CcEECCeEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN--GRTIDGRVVRVS 113 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~--g~~i~gr~i~V~ 113 (279)
..+.++|||+|||+.+++++|+++|++||.|+.|.|+.+ +|||||+|.+.++|+.||+.|+ +..|.|++|.|+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 345789999999999999999999999999999999874 7899999999999999999886 479999999999
Q ss_pred EeecCCCC
Q 023648 114 EVATRGRK 121 (279)
Q Consensus 114 ~a~~~~~~ 121 (279)
++.++...
T Consensus 88 ~A~~~~~~ 95 (105)
T 1sjq_A 88 FSNHKELK 95 (105)
T ss_dssp CCSSSSCC
T ss_pred EcCCCCCC
Confidence 99876543
No 69
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=3.8e-19 Score=140.44 Aligned_cols=86 Identities=35% Similarity=0.531 Sum_probs=79.5
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 34 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+ ..+|||||+|.+.++|++||+.|+|..|.|++|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34466789999999999999999999999999999999988766 88999999999999999999999999999999999
Q ss_pred EEeecCC
Q 023648 113 SEVATRG 119 (279)
Q Consensus 113 ~~a~~~~ 119 (279)
+++.++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9997654
No 70
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.8e-18 Score=129.59 Aligned_cols=86 Identities=26% Similarity=0.500 Sum_probs=77.7
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 34 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
....+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.+ .++|||||+|.+.++|++||. ++..|+|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 34556789999999999999999999999999999999998765 889999999999999999999 478999999999
Q ss_pred EEeecCCCC
Q 023648 113 SEVATRGRK 121 (279)
Q Consensus 113 ~~a~~~~~~ 121 (279)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqg_A 88 KLPNSKQSQ 96 (103)
T ss_dssp ECCCTTCCC
T ss_pred EecCCCCcC
Confidence 999876554
No 71
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.78 E-value=9.1e-19 Score=131.84 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=72.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcE--ECCeEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRT--IDGRVVRV 112 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~--i~gr~i~V 112 (279)
...|..+|||+|||+.+++++|.++|++||.|..|.|+. .+|||||+|.+.++|.+|++.|++.. |.|++|.|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 345778999999999999999999999999999999985 47899999999999999999999875 88999999
Q ss_pred EEeecC
Q 023648 113 SEVATR 118 (279)
Q Consensus 113 ~~a~~~ 118 (279)
++++.+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999764
No 72
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=5e-19 Score=134.05 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=72.6
Q ss_pred CCCCCCeEEEcCCCC-CCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCC--cEECCeEEE
Q 023648 35 TIDDESSVYVGGLPY-SANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNG--RTIDGRVVR 111 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g--~~i~gr~i~ 111 (279)
...+..+|||+|||+ .+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++||+.|++ ..|.|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 345788999999999 9999999999999999999999864 57999999999999999999886 469999999
Q ss_pred EEEeecCCC
Q 023648 112 VSEVATRGR 120 (279)
Q Consensus 112 V~~a~~~~~ 120 (279)
|+++.....
T Consensus 86 V~~a~~~~~ 94 (102)
T 1x4d_A 86 VHLSQKYKR 94 (102)
T ss_dssp EEEECCCTT
T ss_pred EEECCCCCC
Confidence 999986543
No 73
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3e-18 Score=129.60 Aligned_cols=82 Identities=13% Similarity=0.176 Sum_probs=73.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhc--CCcEECCeEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM--NGRTIDGRVVRV 112 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l--~g~~i~gr~i~V 112 (279)
...+..+|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++||+.| ++..|.|++|.|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 3456789999999999999999999999999999988864 789999999999999999977 578899999999
Q ss_pred EEeecCCCC
Q 023648 113 SEVATRGRK 121 (279)
Q Consensus 113 ~~a~~~~~~ 121 (279)
+++..+...
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 999876543
No 74
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=127.00 Aligned_cols=83 Identities=23% Similarity=0.340 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
.....+|||+|||+.+++++|+++|.+| .|..|.|+.+..++++|||||+|.+.++|++||. |++..|+|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 3456899999999999999999999999 9999999998555889999999999999999999 9999999999999999
Q ss_pred ecCCC
Q 023648 116 ATRGR 120 (279)
Q Consensus 116 ~~~~~ 120 (279)
.+++.
T Consensus 85 ~~~~~ 89 (91)
T 2dgw_A 85 KSGPS 89 (91)
T ss_dssp SSCCC
T ss_pred CcCCC
Confidence 87643
No 75
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.4e-19 Score=134.18 Aligned_cols=79 Identities=20% Similarity=0.283 Sum_probs=74.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
+..+|||+|||+.+|+++|.++|++||+|..|.|+.+..+.++|||||+|.+.++|++||. |++..|+|+.|.|.++..
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 4579999999999999999999999999999999998777899999999999999999999 999999999999998754
No 76
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=127.75 Aligned_cols=79 Identities=28% Similarity=0.589 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
..+.++|||+|||+.+++++|+++|++||.|..|.|+ ++||||+|.+.++|++||+.|++..|.|++|.|+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 3456899999999999999999999999999999996 579999999999999999999999999999999999
Q ss_pred ecCCCC
Q 023648 116 ATRGRK 121 (279)
Q Consensus 116 ~~~~~~ 121 (279)
.+....
T Consensus 78 ~~~~~~ 83 (90)
T 2dnq_A 78 KNKSKA 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 876654
No 77
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=129.91 Aligned_cols=83 Identities=29% Similarity=0.562 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
..+.++|||+|||+.+++++|+++|.+||.| .|+.+..++.+|||||+|.+.++|++||+.|++..|.|+.|.|+++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 3457899999999999999999999999987 4566645578999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 023648 116 ATRGRK 121 (279)
Q Consensus 116 ~~~~~~ 121 (279)
.++...
T Consensus 89 ~~~~~~ 94 (101)
T 2fc9_A 89 GPRGSP 94 (101)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 876543
No 78
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=5.5e-19 Score=132.20 Aligned_cols=82 Identities=18% Similarity=0.262 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
...++|||+|||+.+++++|+++|.+||.|..+.++.+..+ .++|||||+|.+.++|++||+.|+|..|.|+.|.|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 44679999999999999999999999999988777776555 78999999999999999999999999999999999998
Q ss_pred ecC
Q 023648 116 ATR 118 (279)
Q Consensus 116 ~~~ 118 (279)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 79
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.77 E-value=4.3e-19 Score=137.20 Aligned_cols=74 Identities=22% Similarity=0.323 Sum_probs=66.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeE-----EEE
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRV-----VRV 112 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~-----i~V 112 (279)
..++|||+|||+++++++|+++|.+||+|..|.|+.+ |||||+|.+.++|++||+.|||..|+|++ |+|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 4679999999999999999999999999999999764 89999999999999999999999999998 666
Q ss_pred EEeec
Q 023648 113 SEVAT 117 (279)
Q Consensus 113 ~~a~~ 117 (279)
..+.+
T Consensus 89 ~~~~~ 93 (115)
T 3beg_B 89 KVDGP 93 (115)
T ss_dssp EECC-
T ss_pred ccCCC
Confidence 65554
No 80
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=134.02 Aligned_cols=82 Identities=27% Similarity=0.590 Sum_probs=76.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
.++|||+|||+.+++++|+++|.+||.|..|.|+.++.+ ..+|||||+|.+.++|++||.. ++..|.|+.|.|+++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 469999999999999999999999999999999998765 7899999999999999999997 99999999999999987
Q ss_pred CCCC
Q 023648 118 RGRK 121 (279)
Q Consensus 118 ~~~~ 121 (279)
+...
T Consensus 106 ~~~~ 109 (116)
T 1x4b_A 106 REES 109 (116)
T ss_dssp CCCC
T ss_pred CccC
Confidence 7553
No 81
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=134.36 Aligned_cols=80 Identities=24% Similarity=0.364 Sum_probs=75.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
.++|||+|||+.+++++|+++|.+||.|..|.|+.+..+ ..+|||||+|.+.++|++|| .|++..|.|+.|.|+++.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 469999999999999999999999999999999998875 78999999999999999999 8999999999999999976
Q ss_pred CC
Q 023648 118 RG 119 (279)
Q Consensus 118 ~~ 119 (279)
..
T Consensus 104 ~~ 105 (114)
T 2cq4_A 104 EK 105 (114)
T ss_dssp HH
T ss_pred Cc
Confidence 53
No 82
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.77 E-value=4.6e-19 Score=131.78 Aligned_cols=80 Identities=20% Similarity=0.317 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEee
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~ 116 (279)
+.++|||+|||+.+++++|+++|.+||.|..+.|+.+..+ ..+|||||+|.+.++|++||+.||+..|.|++|.|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 4579999999999999999999999999998888877665 789999999999999999999999999999999999875
Q ss_pred c
Q 023648 117 T 117 (279)
Q Consensus 117 ~ 117 (279)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 83
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=129.42 Aligned_cols=80 Identities=20% Similarity=0.421 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEEC--CeEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID--GRVVRVS 113 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~--gr~i~V~ 113 (279)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++||+.||+..|. |++|.|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 345689999999999999999999999999999999764 789999999999999999999999999 9999999
Q ss_pred EeecCCC
Q 023648 114 EVATRGR 120 (279)
Q Consensus 114 ~a~~~~~ 120 (279)
++.++..
T Consensus 89 ~a~~~~~ 95 (97)
T 1why_A 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9987654
No 84
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.77 E-value=2.3e-18 Score=131.77 Aligned_cols=84 Identities=20% Similarity=0.458 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.+..+ ..+|||||+|.+.++|++||..+ +..|+|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 345679999999999999999999999999999999998765 88999999999999999999976 5999999999999
Q ss_pred eecCCC
Q 023648 115 VATRGR 120 (279)
Q Consensus 115 a~~~~~ 120 (279)
+.++..
T Consensus 101 a~~~~~ 106 (109)
T 2rs2_A 101 AFPRRA 106 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 987654
No 85
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.77 E-value=9.3e-19 Score=133.02 Aligned_cols=84 Identities=23% Similarity=0.405 Sum_probs=75.0
Q ss_pred CCCCCCCeEEEcCCCCCC------cHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECC
Q 023648 34 MTIDDESSVYVGGLPYSA------NEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (279)
Q Consensus 34 ~~~~~~~~l~V~nLp~~~------te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~g 107 (279)
......++|||+|||+.+ ++++|.++|++||.|..|.|+ ...+.++|||||+|.+.++|++||..|||..|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 344557899999999999 889999999999999999998 3344789999999999999999999999999999
Q ss_pred e-EEEEEEeecC
Q 023648 108 R-VVRVSEVATR 118 (279)
Q Consensus 108 r-~i~V~~a~~~ 118 (279)
+ +|.|.++...
T Consensus 89 ~~~l~V~~a~~~ 100 (105)
T 2nlw_A 89 QHTFRVNLFTDF 100 (105)
T ss_dssp TCEEEEECSCCC
T ss_pred CceEEEEEcchH
Confidence 8 9999998654
No 86
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=130.97 Aligned_cols=82 Identities=24% Similarity=0.307 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEee
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~ 116 (279)
.+.++|||+|||+.+++++|+++|.+||.| .|.|+.++.++++|||||+|.+.++|++||+ |++..|+|+.|.|..+.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 446799999999999999999999999955 9999999866899999999999999999995 89999999999999887
Q ss_pred cCCC
Q 023648 117 TRGR 120 (279)
Q Consensus 117 ~~~~ 120 (279)
+...
T Consensus 91 ~~~~ 94 (102)
T 1wez_A 91 TAGT 94 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 87
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.2e-18 Score=131.08 Aligned_cols=80 Identities=19% Similarity=0.318 Sum_probs=73.0
Q ss_pred cCCCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 33 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
.......++|||+|||..+++++|+++|++||.|..|.|+. .+|||||+|.+.++|+.||..|+|..|+|+.|.|
T Consensus 21 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 95 (101)
T 2la4_A 21 RSAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRT 95 (101)
T ss_dssp TTSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCC
T ss_pred hcCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 33444578999999999999999999999999999999983 5789999999999999999999999999999999
Q ss_pred EEeec
Q 023648 113 SEVAT 117 (279)
Q Consensus 113 ~~a~~ 117 (279)
.++++
T Consensus 96 ~~a~~ 100 (101)
T 2la4_A 96 GWGKE 100 (101)
T ss_dssp CBCCC
T ss_pred EeccC
Confidence 98865
No 88
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.9e-18 Score=126.22 Aligned_cols=80 Identities=25% Similarity=0.481 Sum_probs=73.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
...+.++|||+|||+.+++++|+++|++||.|..|.|+. +||||+|.+.++|++||..|++..|.|+.|.|++
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 345678999999999999999999999999999999964 4999999999999999999999999999999999
Q ss_pred eecCCCC
Q 023648 115 VATRGRK 121 (279)
Q Consensus 115 a~~~~~~ 121 (279)
+.+....
T Consensus 79 a~~~~~~ 85 (92)
T 2dgt_A 79 STSRLRT 85 (92)
T ss_dssp SSCCCSC
T ss_pred ccCCCCC
Confidence 9876553
No 89
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.3e-18 Score=126.77 Aligned_cols=79 Identities=32% Similarity=0.560 Sum_probs=72.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccC--CCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKY--GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
...+.++|||+|||+.+++++|+++|.+| |.|..|.++ +|||||+|.+.++|++||..|+|..|.|++|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34567899999999999999999999999 999999874 679999999999999999999999999999999
Q ss_pred EEeecCCC
Q 023648 113 SEVATRGR 120 (279)
Q Consensus 113 ~~a~~~~~ 120 (279)
+++.+...
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99987654
No 90
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.3e-18 Score=127.72 Aligned_cols=84 Identities=29% Similarity=0.479 Sum_probs=74.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
...+.++|||+|||+.+++++|+++|+.|+ .|.|+.+..+ ..+|||||+|.+.++|++||+.|++..|.|+.|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345678999999999999999999999885 5667776555 789999999999999999999999999999999999
Q ss_pred EeecCCCC
Q 023648 114 EVATRGRK 121 (279)
Q Consensus 114 ~a~~~~~~ 121 (279)
++.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2fc8_A 88 WAKPKGEG 95 (102)
T ss_dssp ECCCCCSS
T ss_pred EecCCCCC
Confidence 99876553
No 91
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.76 E-value=4.1e-18 Score=132.93 Aligned_cols=81 Identities=26% Similarity=0.475 Sum_probs=75.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
.++|||+|||+.+++++|+++|++||.|..|.|+.++.+ .++|||||+|.+.++|++|| .|+|..|+|+.|.|+++.+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 469999999999999999999999999999999988655 88999999999999999999 7999999999999999976
Q ss_pred CCC
Q 023648 118 RGR 120 (279)
Q Consensus 118 ~~~ 120 (279)
...
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 92
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4e-18 Score=130.17 Aligned_cols=82 Identities=28% Similarity=0.536 Sum_probs=75.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
...+.++|||+|||..+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|++||..|+|..|.|+.|.|.+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 3456789999999999999999999999999999999875 78999999999999999999999999999999999
Q ss_pred eecCCCC
Q 023648 115 VATRGRK 121 (279)
Q Consensus 115 a~~~~~~ 121 (279)
+.+....
T Consensus 96 a~~~~~~ 102 (109)
T 1x4g_A 96 GKESPDM 102 (109)
T ss_dssp CCCCCSS
T ss_pred cCCCCCC
Confidence 9876543
No 93
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.76 E-value=4.5e-18 Score=127.47 Aligned_cols=79 Identities=23% Similarity=0.522 Sum_probs=71.6
Q ss_pred CCCCCCCeEEEcCCCC-CCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 34 MTIDDESSVYVGGLPY-SANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 34 ~~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
....+.++|||+|||+ .+++++|+++|++||.|..|.| .+|||||+|.+.++|++||+.|+|..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI-------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE-------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3455678999999998 9999999999999999999998 3789999999999999999999999999999999
Q ss_pred EEeecCC
Q 023648 113 SEVATRG 119 (279)
Q Consensus 113 ~~a~~~~ 119 (279)
+++.+..
T Consensus 90 ~~a~~~~ 96 (97)
T 2xnq_A 90 EVSSSNA 96 (97)
T ss_dssp EECCCCC
T ss_pred EecCCCC
Confidence 9987643
No 94
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=133.87 Aligned_cols=83 Identities=14% Similarity=0.197 Sum_probs=74.7
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCC--cEECCeEEE
Q 023648 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNG--RTIDGRVVR 111 (279)
Q Consensus 34 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g--~~i~gr~i~ 111 (279)
....+..+|||+|||+.+++++|+++|++||.|+.|.|+.+ +|||||+|.+.++|++||+.|++ ..|.|++|.
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 34566789999999999999999999999999999999874 78999999999999999998874 689999999
Q ss_pred EEEeecCCCC
Q 023648 112 VSEVATRGRK 121 (279)
Q Consensus 112 V~~a~~~~~~ 121 (279)
|+++.++...
T Consensus 101 V~~a~~k~~~ 110 (119)
T 2ad9_A 101 IQFSNHKELK 110 (119)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCCCCC
Confidence 9999876554
No 95
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=6.7e-19 Score=132.59 Aligned_cols=83 Identities=23% Similarity=0.490 Sum_probs=73.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCC--CCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR--STRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~--~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
.....++|||+|||+.+++++|+++|++|| |..|.|+.+. .++.+|||||+|.+.++|++|| .|+|..|+|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345578999999999999999999999999 9999999887 3488999999999999999999 89999999999999
Q ss_pred EEeecCC
Q 023648 113 SEVATRG 119 (279)
Q Consensus 113 ~~a~~~~ 119 (279)
+++.+..
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9997653
No 96
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.3e-18 Score=124.96 Aligned_cols=78 Identities=22% Similarity=0.487 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
..+.++|||+|||+.+++++|+++|++||.|..|.|+. +||||+|.+.++|++||+.|+|..|.|++|.|+++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 34578999999999999999999999999999999964 49999999999999999999999999999999999
Q ss_pred ecCCC
Q 023648 116 ATRGR 120 (279)
Q Consensus 116 ~~~~~ 120 (279)
.+...
T Consensus 79 ~~~~~ 83 (90)
T 2dnp_A 79 TKGQK 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 97
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.4e-19 Score=129.83 Aligned_cols=79 Identities=27% Similarity=0.549 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+ .++|||||+|.+.++|++||+.|||..|.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46789999999999999999999999999999999998765 78999999999999999999999999999999887654
No 98
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1e-18 Score=131.98 Aligned_cols=81 Identities=37% Similarity=0.762 Sum_probs=75.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
.++|||+|||+.+++++|+++|++||.|..|.|+.+..+ .++|||||+|.+.++|++||+.|+|..|.|+.|.|+++.+
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 469999999999999999999999999999999988655 7899999999999999999999999999999999999976
Q ss_pred CC
Q 023648 118 RG 119 (279)
Q Consensus 118 ~~ 119 (279)
..
T Consensus 88 ~~ 89 (104)
T 1p1t_A 88 EK 89 (104)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 99
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.2e-18 Score=130.92 Aligned_cols=83 Identities=20% Similarity=0.427 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEE--------CC
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI--------DG 107 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i--------~g 107 (279)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+.+..+..+|||||+|.+.++|++||..|||..| .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 3456899999999999999999999999999999999988558899999999999999999999999999 57
Q ss_pred eEEEEEEeecC
Q 023648 108 RVVRVSEVATR 118 (279)
Q Consensus 108 r~i~V~~a~~~ 118 (279)
++|.|.++.+.
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999999754
No 100
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.75 E-value=2.6e-18 Score=131.42 Aligned_cols=79 Identities=22% Similarity=0.460 Sum_probs=72.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
...+.++|||+|||+.+++++|+++|++||.|..|.|+ +|||||+|.+.++|++||..|+|..|+|+.|.|++
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34567899999999999999999999999999999997 68999999999999999999999999999999999
Q ss_pred eecCCC
Q 023648 115 VATRGR 120 (279)
Q Consensus 115 a~~~~~ 120 (279)
+.+...
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 987654
No 101
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.75 E-value=3.8e-18 Score=138.58 Aligned_cols=85 Identities=36% Similarity=0.617 Sum_probs=78.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.+..+ .++|||||+|.+.++|++||+.|||..|.|++|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345789999999999999999999999999999999998755 8999999999999999999999999999999999999
Q ss_pred eecCCC
Q 023648 115 VATRGR 120 (279)
Q Consensus 115 a~~~~~ 120 (279)
+.+...
T Consensus 147 a~~~~~ 152 (158)
T 2kn4_A 147 ARYGRP 152 (158)
T ss_dssp ECCSSC
T ss_pred CCCCCC
Confidence 987654
No 102
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.75 E-value=1.9e-18 Score=134.25 Aligned_cols=81 Identities=19% Similarity=0.286 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCC---EEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGS---VVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~---I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
...++|||+|||+++++++|+++|+.||. |..|.|+.+..++++|||||+|.+.++|++||+ |++..|+|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 45679999999999999999999999999 899999998878899999999999999999999 99999999999999
Q ss_pred EeecC
Q 023648 114 EVATR 118 (279)
Q Consensus 114 ~a~~~ 118 (279)
++...
T Consensus 94 ~a~~~ 98 (118)
T 2db1_A 94 KSHRT 98 (118)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98653
No 103
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.75 E-value=1.6e-18 Score=133.30 Aligned_cols=81 Identities=12% Similarity=0.155 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCC-CEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYG-SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
....++|||+|||+.+++++|+++|++|| .|..|.|+.. ..+|||||+|.+.++|++||+.|||..|.|+.|.|++
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34568999999999999999999999999 8999988632 3789999999999999999999999999999999999
Q ss_pred eecCC
Q 023648 115 VATRG 119 (279)
Q Consensus 115 a~~~~ 119 (279)
+...+
T Consensus 102 a~~~p 106 (111)
T 2jvr_A 102 DDNPP 106 (111)
T ss_dssp SCC--
T ss_pred CCCCC
Confidence 86543
No 104
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.9e-18 Score=129.43 Aligned_cols=84 Identities=15% Similarity=0.297 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCC-EEEEEEe-eCCCC-CCceEEEEEEcChHHHHHHHHhcC--CcEECCeEEE
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGS-VVAVKIV-NDRST-RGKCYGFVTFGNPRSAVDAINDMN--GRTIDGRVVR 111 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~-I~~v~i~-~d~~~-~~~g~afV~f~~~~~A~~Al~~l~--g~~i~gr~i~ 111 (279)
.+.++|||+|||+.+++++|.++|.+||. |..|.|+ .+..+ ..+|||||+|.+.++|+.||..|+ +..|.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35679999999999999999999999998 9999998 66655 789999999999999999999996 5899999999
Q ss_pred EEEeecCCC
Q 023648 112 VSEVATRGR 120 (279)
Q Consensus 112 V~~a~~~~~ 120 (279)
|+++.+...
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987655
No 105
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=6.2e-18 Score=123.00 Aligned_cols=75 Identities=24% Similarity=0.427 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhc-CCcEECCeEEEEEEe
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM-NGRTIDGRVVRVSEV 115 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l-~g~~i~gr~i~V~~a 115 (279)
.+.++|||+|||..+++++|+++|.+||.|..|.|+. .+|||||+|.+.++|++|+..| ++..|.|++|.|+++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 4567999999999999999999999999999999987 4789999999999999999999 999999999999987
Q ss_pred e
Q 023648 116 A 116 (279)
Q Consensus 116 ~ 116 (279)
+
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 106
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=2.3e-18 Score=148.86 Aligned_cols=80 Identities=18% Similarity=0.432 Sum_probs=74.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCC--CEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYG--SVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
..++|||+|||+.|++++|+++|.+|| .|+.|.|+.++.+ +++|||||+|.+.++|++||+.||++.|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 9999999999766 8999999999999999999999999999999999999
Q ss_pred eec
Q 023648 115 VAT 117 (279)
Q Consensus 115 a~~ 117 (279)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 865
No 107
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=2.9e-18 Score=135.02 Aligned_cols=83 Identities=11% Similarity=0.218 Sum_probs=73.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHH----HHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVR----KVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i 110 (279)
...+..+|||+|||+.+++++|+ ++|++||.|..|.|.. .+.++|||||+|.+.++|+.||..|||..|.|++|
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 44567899999999999998865 7999999999988753 34689999999999999999999999999999999
Q ss_pred EEEEeecCC
Q 023648 111 RVSEVATRG 119 (279)
Q Consensus 111 ~V~~a~~~~ 119 (279)
.|.++....
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999997653
No 108
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=1.5e-18 Score=130.63 Aligned_cols=77 Identities=34% Similarity=0.563 Sum_probs=72.8
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeecCC
Q 023648 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRG 119 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~~~ 119 (279)
++|||+|||+.+++++|+++|++||.|..|.|+.+ .+|||||+|.+.++|++||+.|+|..|.|+.|.|+++.+..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 48999999999999999999999999999999887 68899999999999999999999999999999999998765
Q ss_pred C
Q 023648 120 R 120 (279)
Q Consensus 120 ~ 120 (279)
.
T Consensus 77 ~ 77 (101)
T 2hvz_A 77 R 77 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 109
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.7e-18 Score=129.79 Aligned_cols=80 Identities=21% Similarity=0.230 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCc--EECCeEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGR--TIDGRVVRVS 113 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~--~i~gr~i~V~ 113 (279)
..+..+|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++||+.|++. .|.|++|.|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 345689999999999999999999999999999998763 789999999999999999988654 5999999999
Q ss_pred EeecCCC
Q 023648 114 EVATRGR 120 (279)
Q Consensus 114 ~a~~~~~ 120 (279)
++..+..
T Consensus 87 ~a~~~~~ 93 (104)
T 1wex_A 87 YSTSKRI 93 (104)
T ss_dssp ECSSSSC
T ss_pred EccCccc
Confidence 9987554
No 110
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.9e-18 Score=128.33 Aligned_cols=83 Identities=18% Similarity=0.314 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEE-EEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVA-VKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~-v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
....++|||+|||+.+++++|+++|.+||.|.. |.|+.+..++++|||||+|.+.++|++||.. ++..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 345689999999999999999999999999987 8888885558999999999999999999997 99999999999998
Q ss_pred eecCC
Q 023648 115 VATRG 119 (279)
Q Consensus 115 a~~~~ 119 (279)
+.+..
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 87544
No 111
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.9e-18 Score=127.37 Aligned_cols=81 Identities=30% Similarity=0.501 Sum_probs=74.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
...+.++|||+|||+.+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|++||+.|+|..|.|++|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 3456789999999999999999999999999999999863 78999999999999999999999999999999999
Q ss_pred eecCCC
Q 023648 115 VATRGR 120 (279)
Q Consensus 115 a~~~~~ 120 (279)
+.+...
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 987654
No 112
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.74 E-value=5.8e-18 Score=134.45 Aligned_cols=81 Identities=27% Similarity=0.509 Sum_probs=74.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
...+..+|||+|||+.+++++|+++|++||.|..|.|+.++.+ ..+|||||+|.+.++|++||+.|+|..|.|++|.|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999988665 889999999999999999999999999999999998
Q ss_pred Ee
Q 023648 114 EV 115 (279)
Q Consensus 114 ~a 115 (279)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 113
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.4e-18 Score=132.66 Aligned_cols=83 Identities=18% Similarity=0.235 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCE-EEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSV-VAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I-~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
..+.++|||+|||+.+++++|+++|.+||.| ..|.|+.+..++.+|||||+|.+.++|++||+. ++..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 3456899999999999999999999999999 889999988558999999999999999999996 99999999999999
Q ss_pred eecCC
Q 023648 115 VATRG 119 (279)
Q Consensus 115 a~~~~ 119 (279)
+.+..
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 97654
No 114
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.2e-18 Score=126.20 Aligned_cols=79 Identities=19% Similarity=0.421 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCC-EEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCC-cEECCeEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGS-VVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNG-RTIDGRVVRVS 113 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g-~~i~gr~i~V~ 113 (279)
..+.++|||+|||+.+++++|+++|++||. |..+.|. .+|||||+|.+.++|++||+.||| ..|.|++|.|+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 345679999999999999999999999999 5555553 478999999999999999999999 99999999999
Q ss_pred EeecCCC
Q 023648 114 EVATRGR 120 (279)
Q Consensus 114 ~a~~~~~ 120 (279)
++.++..
T Consensus 79 ~a~~~~~ 85 (93)
T 2cqh_A 79 YSVSKKL 85 (93)
T ss_dssp ECCCCCC
T ss_pred EccCccc
Confidence 9987654
No 115
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.74 E-value=1.1e-18 Score=124.07 Aligned_cols=74 Identities=24% Similarity=0.535 Sum_probs=69.8
Q ss_pred eEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 41 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
+|||+|||+.+++++|+++|++||+|..|.|+.++.+ .++|||||+|.+.++|++||+ |++..|+|++|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999999988755 889999999999999999998 9999999999999875
No 116
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.74 E-value=1.3e-18 Score=138.40 Aligned_cols=86 Identities=36% Similarity=0.608 Sum_probs=78.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.+..+ +.+|||||+|.+.++|++||..|+|..|.|++|.|++
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345679999999999999999999999999999999988755 8899999999999999999999999999999999999
Q ss_pred eecCCCC
Q 023648 115 VATRGRK 121 (279)
Q Consensus 115 a~~~~~~ 121 (279)
+.+....
T Consensus 124 a~~~~~~ 130 (135)
T 2lea_A 124 ARYGRPP 130 (135)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 117
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-18 Score=123.69 Aligned_cols=75 Identities=21% Similarity=0.534 Sum_probs=71.1
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
++|||+|||+.+++++|+++|++||.|..|.|+.++.+ .++|||||+|.+.++|++|+..|+ ..|+|++|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999999998765 789999999999999999999999 9999999999986
No 118
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.5e-18 Score=128.42 Aligned_cols=79 Identities=25% Similarity=0.562 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCC-CCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 36 IDDESSVYVGGLPY-SANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
..+.++|||+|||+ .+++++|+++|++||.|..|.|. +|||||+|.+.++|+.||..|+|..|.|++|.|++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 45678999999999 99999999999999999999984 68999999999999999999999999999999999
Q ss_pred eecCCCC
Q 023648 115 VATRGRK 121 (279)
Q Consensus 115 a~~~~~~ 121 (279)
+.+....
T Consensus 80 a~~~~~~ 86 (96)
T 2kvi_A 80 SSSNARP 86 (96)
T ss_dssp EECCCC-
T ss_pred cCcCCCC
Confidence 9876543
No 119
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.74 E-value=1e-18 Score=138.00 Aligned_cols=84 Identities=18% Similarity=0.358 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEE--EEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCc----EECCe
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVA--VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGR----TIDGR 108 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~--v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~----~i~gr 108 (279)
..+..+|||+|||+.+++++|+++|.+||.|.. |.|+.++.+ +++|||||+|.+. +|.+||..|+|. .|.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 356789999999999999999999999999976 999999855 8999999999999 999999999999 99999
Q ss_pred EEEEEEeecCCC
Q 023648 109 VVRVSEVATRGR 120 (279)
Q Consensus 109 ~i~V~~a~~~~~ 120 (279)
.|.|+++.+...
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999987544
No 120
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.74 E-value=8.7e-18 Score=128.50 Aligned_cols=77 Identities=29% Similarity=0.529 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCC-CcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 37 DDESSVYVGGLPYS-ANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 37 ~~~~~l~V~nLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
.+.++|||+|||+. +++++|+++|++||.|..|.| .+|||||+|.+.++|++||+.|++..|.|+.|.|+++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34579999999999 999999999999999999998 4789999999999999999999999999999999999
Q ss_pred ecCCC
Q 023648 116 ATRGR 120 (279)
Q Consensus 116 ~~~~~ 120 (279)
.+...
T Consensus 98 ~~~~~ 102 (110)
T 1wf1_A 98 GEPKP 102 (110)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 75443
No 121
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=3.4e-18 Score=127.87 Aligned_cols=79 Identities=20% Similarity=0.381 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEee
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~ 116 (279)
...++|||+|||+.+++++|+++|.+||.|. +.|+.+ ..+|||||+|.+.++|++||+.|||..|.|+.|.|+++.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4467999999999999999999999999997 666654 478999999999999999999999999999999999998
Q ss_pred cCC
Q 023648 117 TRG 119 (279)
Q Consensus 117 ~~~ 119 (279)
++.
T Consensus 93 ~~~ 95 (97)
T 2e5j_A 93 QQR 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 122
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.74 E-value=8e-18 Score=129.56 Aligned_cols=82 Identities=18% Similarity=0.406 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
..+..+|||+|||+.+++++|.++|++||.|..|.|+.+. ..+|||||+|.+.++|++||..|||..|.|+.|.|.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP--ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST--TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC--CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 3457899999999999999999999999999999998653 35899999999999999999999999999999999999
Q ss_pred ecCC
Q 023648 116 ATRG 119 (279)
Q Consensus 116 ~~~~ 119 (279)
.+..
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 7643
No 123
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=2.5e-18 Score=124.27 Aligned_cols=72 Identities=26% Similarity=0.521 Sum_probs=66.3
Q ss_pred CeEEEcCCCCCC------cHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCe-EEEE
Q 023648 40 SSVYVGGLPYSA------NEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGR-VVRV 112 (279)
Q Consensus 40 ~~l~V~nLp~~~------te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr-~i~V 112 (279)
++|||+|||+.+ ++++|+++|++||.|..|.|+ ...++++|||||+|.+.++|++||..|||..|.|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 789999999999999999987 33447899999999999999999999999999999 8876
No 124
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.73 E-value=3.5e-18 Score=136.07 Aligned_cols=82 Identities=18% Similarity=0.285 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCC---EEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGS---VVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
....++|||+|||+.+|+++|+++|++||. |..|.|+.+..++++|||||+|.+.++|++||+ |++..|+|+.|.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 345789999999999999999999999999 889999998888899999999999999999999 9999999999999
Q ss_pred EEeecC
Q 023648 113 SEVATR 118 (279)
Q Consensus 113 ~~a~~~ 118 (279)
.++.+.
T Consensus 120 ~~a~~~ 125 (136)
T 2hgl_A 120 FKSHRT 125 (136)
T ss_dssp EECCHH
T ss_pred EECChH
Confidence 988643
No 125
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6e-18 Score=130.19 Aligned_cols=83 Identities=17% Similarity=0.346 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCE----EEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSV----VAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I----~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~ 111 (279)
..+.++|||+|||+.+++++|+++|.+||.| ..+.++ .++.+|||||+|.+.++|++||+.|+|..|.|+.|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3467899999999999999999999999998 455554 346889999999999999999999999999999999
Q ss_pred EEEeecCCCC
Q 023648 112 VSEVATRGRK 121 (279)
Q Consensus 112 V~~a~~~~~~ 121 (279)
|+++.+....
T Consensus 99 v~~a~~~~~~ 108 (115)
T 2cpx_A 99 IEFGKNKKQR 108 (115)
T ss_dssp EEECCCCSCC
T ss_pred EEEccCCCCC
Confidence 9999876554
No 126
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.73 E-value=3.8e-18 Score=127.23 Aligned_cols=82 Identities=20% Similarity=0.421 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHH----HHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVR----KVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~ 111 (279)
..+.++|||+|||+.+++++|+ ++|++||.|..|.|+. .+..+|||||+|.+.++|+.|+..|+|..|.|+.|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 4567899999999999999999 9999999999998873 224679999999999999999999999999999999
Q ss_pred EEEeecCC
Q 023648 112 VSEVATRG 119 (279)
Q Consensus 112 V~~a~~~~ 119 (279)
|+++.+..
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99998754
No 127
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.73 E-value=9.9e-19 Score=128.74 Aligned_cols=80 Identities=34% Similarity=0.676 Sum_probs=71.9
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeecC
Q 023648 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~~ 118 (279)
++|||+|||..+++++|+++|++||.|..|.|+.+..+ .++|||||+|.+.+ |++|+..|+|..|.|+.|.|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 48999999999999999999999999999999988765 78999999999999 99999999999999999999999775
Q ss_pred CC
Q 023648 119 GR 120 (279)
Q Consensus 119 ~~ 120 (279)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 128
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=9.7e-18 Score=128.52 Aligned_cols=78 Identities=33% Similarity=0.487 Sum_probs=72.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeecC
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~~ 118 (279)
..+|||+|||+.+++++|+++|+.| .|..|.|+.+..++++|||||+|.+.++|++|| .|++..|+|+.|.|..+...
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 3599999999999999999999999 899999999887889999999999999999999 59999999999999888653
No 129
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2e-18 Score=135.03 Aligned_cols=82 Identities=22% Similarity=0.362 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEe-eCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~-~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
..+.++|||+|||+.+++++|+++|.+||.|..+.++ .+..++.+|||||+|.+.++|++||. |++..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456899999999999999999999999999874444 44444889999999999999999999 999999999999999
Q ss_pred eecC
Q 023648 115 VATR 118 (279)
Q Consensus 115 a~~~ 118 (279)
+.+.
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8653
No 130
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.5e-18 Score=131.44 Aligned_cols=82 Identities=17% Similarity=0.261 Sum_probs=72.8
Q ss_pred CCCCCCCeEEEcCCCCC-CcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcC--CcEECCeEE
Q 023648 34 MTIDDESSVYVGGLPYS-ANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN--GRTIDGRVV 110 (279)
Q Consensus 34 ~~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~--g~~i~gr~i 110 (279)
....+.++|||+|||++ +++++|+++|++||.|..|.|+. .+|||||+|.+.++|+.||+.|+ +..|.|++|
T Consensus 20 ~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 20 QKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp CSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred ccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 34567889999999998 99999999999999999999975 47899999999999999999885 456999999
Q ss_pred EEEEeecCCC
Q 023648 111 RVSEVATRGR 120 (279)
Q Consensus 111 ~V~~a~~~~~ 120 (279)
.|+++.....
T Consensus 95 ~V~~a~~~~~ 104 (112)
T 1x4f_A 95 KVDLSEKYKK 104 (112)
T ss_dssp EEEEECSCSS
T ss_pred EEEECccccc
Confidence 9999976544
No 131
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=2.9e-19 Score=138.08 Aligned_cols=85 Identities=28% Similarity=0.455 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEE--------EEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECC
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVA--------VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~g 107 (279)
.+.++|||+|||+.+++++|+++|++||.|.. |.|+.++.+ ..+|||||+|.+.++|++||..|+|..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45679999999999999999999999999998 889888665 789999999999999999999999999999
Q ss_pred eEEEEEEeecCCCC
Q 023648 108 RVVRVSEVATRGRK 121 (279)
Q Consensus 108 r~i~V~~a~~~~~~ 121 (279)
++|.|+++.++...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999876553
No 132
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.72 E-value=5.6e-18 Score=126.18 Aligned_cols=81 Identities=20% Similarity=0.413 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
..+.++|||+|||+.+++++|+++|.+||.|..+ ...+..+|||||+|.+.++|++||..|+|..|.|++|.|+++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 3456799999999999999999999999988766 223468899999999999999999999999999999999999
Q ss_pred ecCCC
Q 023648 116 ATRGR 120 (279)
Q Consensus 116 ~~~~~ 120 (279)
.++..
T Consensus 89 ~~~~~ 93 (96)
T 1fjc_A 89 GEKGG 93 (96)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 87654
No 133
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.9e-17 Score=121.50 Aligned_cols=79 Identities=19% Similarity=0.358 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
..+.++|||+|| .+++++|+++|.+||.|..|.|.. .+|||||+|.+.++|++||..|++..|.|++|.|+++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-----PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 446789999996 899999999999999999999853 6889999999999999999999999999999999999
Q ss_pred ecCCCC
Q 023648 116 ATRGRK 121 (279)
Q Consensus 116 ~~~~~~ 121 (279)
.+....
T Consensus 85 ~~~~~~ 90 (97)
T 1x5p_A 85 RKQPML 90 (97)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 876543
No 134
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=7.5e-18 Score=129.40 Aligned_cols=77 Identities=16% Similarity=0.212 Sum_probs=71.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeecC
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~~ 118 (279)
.++|||+|||+.+++++|+++|++||.|..|.|+. .+|||||+|.+.++|+.||..|||..|.|++|.|+++...
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 56999999999999999999999999999998875 5789999999999999999999999999999999999764
Q ss_pred CC
Q 023648 119 GR 120 (279)
Q Consensus 119 ~~ 120 (279)
..
T Consensus 85 ~~ 86 (111)
T 1whx_A 85 VF 86 (111)
T ss_dssp TT
T ss_pred cc
Confidence 33
No 135
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.72 E-value=9.2e-18 Score=139.53 Aligned_cols=84 Identities=21% Similarity=0.434 Sum_probs=78.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
...+.++|||+|||+.+++++|+++|++||.|+.|.|+.+..+.++|||||+|.+.++|++||+.|+|..|.|++|+|++
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999999988558899999999999999999999999999999999999
Q ss_pred eecC
Q 023648 115 VATR 118 (279)
Q Consensus 115 a~~~ 118 (279)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 9764
No 136
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.71 E-value=2.3e-18 Score=131.30 Aligned_cols=83 Identities=17% Similarity=0.292 Sum_probs=76.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCC---EEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGS---VVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~ 111 (279)
.....++|||+|||+.+++++|+++|..||. |..|.|+.+..++++|||||+|.+.++|++||. |++..|+|+.|.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 3456789999999999999999999999998 899999988878899999999999999999999 999999999999
Q ss_pred EEEeecC
Q 023648 112 VSEVATR 118 (279)
Q Consensus 112 V~~a~~~ 118 (279)
|.++.+.
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998653
No 137
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.71 E-value=3.7e-17 Score=139.28 Aligned_cols=83 Identities=28% Similarity=0.431 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
..+.++|||+|||+.+++++|+++|++||+|..|.|+.++.+ .++|||||+|.+.++|++||+.|++..+.|+.|.|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 345679999999999999999999999999999999998876 8899999999999999999999999999999999998
Q ss_pred eecC
Q 023648 115 VATR 118 (279)
Q Consensus 115 a~~~ 118 (279)
+...
T Consensus 92 ~~~~ 95 (213)
T 4f02_A 92 SQRD 95 (213)
T ss_dssp CCCC
T ss_pred cccc
Confidence 8543
No 138
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.71 E-value=2.2e-18 Score=137.78 Aligned_cols=83 Identities=24% Similarity=0.297 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
.....+|||+|||+++++++|+++|++|| |+.|.|+.++.++++|||||+|.+.++|++|| .|++..|+|+.|.|..+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 35567999999999999999999999999 66999999887789999999999999999999 69999999999999988
Q ss_pred ecCCC
Q 023648 116 ATRGR 120 (279)
Q Consensus 116 ~~~~~ 120 (279)
.+...
T Consensus 121 ~~~~~ 125 (139)
T 2hgn_A 121 STTGA 125 (139)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 76544
No 139
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.71 E-value=1.9e-17 Score=124.70 Aligned_cols=81 Identities=30% Similarity=0.564 Sum_probs=74.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
+.++|||+|||+.+++++|.++|++||.|..|.|+.+..+..+|||||+|.+.++|++||. ++..|+|+.|.|.++.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 3579999999999999999999999999999999999855899999999999999999999 99999999999999987
Q ss_pred CCC
Q 023648 118 RGR 120 (279)
Q Consensus 118 ~~~ 120 (279)
...
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 654
No 140
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.71 E-value=1.6e-17 Score=133.97 Aligned_cols=81 Identities=31% Similarity=0.553 Sum_probs=75.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|+.||..|+|..|.|++|.|++
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3456789999999999999999999999999999999876 689999999999999999999999999999999999
Q ss_pred eecCC
Q 023648 115 VATRG 119 (279)
Q Consensus 115 a~~~~ 119 (279)
+.++.
T Consensus 145 a~~~~ 149 (150)
T 2i2y_A 145 SNGEK 149 (150)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 97754
No 141
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-18 Score=130.60 Aligned_cols=82 Identities=15% Similarity=0.276 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
.+..+|||+|||+.+++++|+++|.+||.|.. .++.+..+ .++|||||+|.+.++|++||+ |+|..|.|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35679999999999999999999999999877 44444443 789999999999999999999 9999999999999999
Q ss_pred ecCCC
Q 023648 116 ATRGR 120 (279)
Q Consensus 116 ~~~~~ 120 (279)
.++..
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87654
No 142
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.70 E-value=6.1e-17 Score=127.47 Aligned_cols=77 Identities=19% Similarity=0.382 Sum_probs=70.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceE-EEEEEcChHHHHHHHHhcCCcEECC--eEEEEEEe
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCY-GFVTFGNPRSAVDAINDMNGRTIDG--RVVRVSEV 115 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~-afV~f~~~~~A~~Al~~l~g~~i~g--r~i~V~~a 115 (279)
-..|||+||++.+|+++|+++|++||.|..|.|+.. .+|| |||+|.+.++|+.|++.|||..|.| ++|+|+++
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 347889999999999999999999999999988764 4678 9999999999999999999999988 99999999
Q ss_pred ecCC
Q 023648 116 ATRG 119 (279)
Q Consensus 116 ~~~~ 119 (279)
++..
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 8754
No 143
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=119.04 Aligned_cols=79 Identities=20% Similarity=0.394 Sum_probs=68.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEee
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~ 116 (279)
....+|||+|||+.+++++|+++|.+||.|..| +.+..+.. ||||+|.+.++|++||. |+|..|+|+.|.|+++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~--~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV--FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC--EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc--EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 345799999999999999999999999999987 44443322 99999999999999999 99999999999999886
Q ss_pred cCCC
Q 023648 117 TRGR 120 (279)
Q Consensus 117 ~~~~ 120 (279)
++..
T Consensus 81 ~~~~ 84 (94)
T 2e5g_A 81 QKEF 84 (94)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 5543
No 144
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.1e-17 Score=126.38 Aligned_cols=84 Identities=20% Similarity=0.294 Sum_probs=74.1
Q ss_pred hcCCCCCCCeEEE--cCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEE----
Q 023648 32 VKMTIDDESSVYV--GGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI---- 105 (279)
Q Consensus 32 ~~~~~~~~~~l~V--~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i---- 105 (279)
......+..+||| +||++.+++++|+++|++||.|..|.|+. .+|||||+|.+.++|++|++.|||..|
T Consensus 18 ~~~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~l 92 (114)
T 2cq2_A 18 IETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 92 (114)
T ss_dssp CCCCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred CcCCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEcccc
Confidence 3445567789999 77999999999999999999999998864 378999999999999999999999998
Q ss_pred -CCeEEEEEEeecCCC
Q 023648 106 -DGRVVRVSEVATRGR 120 (279)
Q Consensus 106 -~gr~i~V~~a~~~~~ 120 (279)
.|.+|.|.++...+.
T Consensus 93 g~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 93 GQKITLYLNFVEKVQW 108 (114)
T ss_dssp SCEEECEEEEESCCCC
T ss_pred CCCcEEEEEecccCcc
Confidence 789999999975543
No 145
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.4e-17 Score=130.42 Aligned_cols=80 Identities=19% Similarity=0.308 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCE----EEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSV----VAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I----~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
....+|||+|||+.+++++|+++|++||.| ..|.|+.+..++++|||||+|.+.++|++||+. ++..|+|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 456899999999999999999999999986 689999887668999999999999999999995 999999999999
Q ss_pred EEeec
Q 023648 113 SEVAT 117 (279)
Q Consensus 113 ~~a~~ 117 (279)
..+.+
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88854
No 146
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.70 E-value=6.1e-18 Score=120.11 Aligned_cols=74 Identities=19% Similarity=0.424 Sum_probs=69.4
Q ss_pred eEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 41 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
+|||+|||+.+++++|+++|++||+|..|.|+.+..+ .++|||||+|.+.++|++||+ +++..|.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 5999999999999999999999999999999988765 789999999999999999999 5899999999999875
No 147
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.70 E-value=2.2e-17 Score=132.14 Aligned_cols=86 Identities=20% Similarity=0.301 Sum_probs=73.7
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEE------EEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCe
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAV------KIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGR 108 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v------~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr 108 (279)
...+.++|||+|||+.+++++|.++|.+||.|..| .|.....+..+|||||+|.+.++|.+||..|||..|.|+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 35677899999999999999999999999998763 122123446899999999999999999999999999999
Q ss_pred EEEEEEeecCCC
Q 023648 109 VVRVSEVATRGR 120 (279)
Q Consensus 109 ~i~V~~a~~~~~ 120 (279)
.|.|.++.+...
T Consensus 121 ~l~V~~a~~~~~ 132 (143)
T 3egn_A 121 PMVVQFARSARP 132 (143)
T ss_dssp ECEEEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999977544
No 148
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.69 E-value=4.7e-17 Score=119.47 Aligned_cols=75 Identities=25% Similarity=0.316 Sum_probs=69.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
..++|||+|||+.+++++|+++|++| .|..|.|. +.+|||||+|.+.++|++||+.|+|..|.|++|.|+++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 45799999999999999999999999 99999885 3789999999999999999999999999999999999865
Q ss_pred C
Q 023648 118 R 118 (279)
Q Consensus 118 ~ 118 (279)
.
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 149
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.69 E-value=5.7e-17 Score=132.36 Aligned_cols=79 Identities=19% Similarity=0.352 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECC--eEEEEEEe
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG--RVVRVSEV 115 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~g--r~i~V~~a 115 (279)
...+|||+||++.+++++|+++|++||.|..|.|+... .+|||||+|.+.++|+.|++.|||..|.| ++|+|+++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 34578999999999999999999999999999997542 57899999999999999999999999965 99999999
Q ss_pred ecCC
Q 023648 116 ATRG 119 (279)
Q Consensus 116 ~~~~ 119 (279)
++..
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 8763
No 150
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.69 E-value=3e-17 Score=128.89 Aligned_cols=81 Identities=19% Similarity=0.336 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEE--EEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVV--AVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~--~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
....++|||+|||+.+++++|+++|++| .|+ .|.|+.++.++++|||||+|.+.++|++||+ +++..|+|+.|.|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEE
Confidence 3456899999999999999999999999 576 8999988878899999999999999999998 47899999999998
Q ss_pred EeecC
Q 023648 114 EVATR 118 (279)
Q Consensus 114 ~a~~~ 118 (279)
.+.+.
T Consensus 117 ~a~~~ 121 (126)
T 2hgm_A 117 KSSQE 121 (126)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88643
No 151
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.1e-16 Score=127.89 Aligned_cols=82 Identities=28% Similarity=0.587 Sum_probs=76.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
...+..+|||+|||..+++++|.++|++||.|..+.|+.+..+ .++|||||+|.+.++|.+||..|+|..|+|++|.|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 3456789999999999999999999999999999999988655 889999999999999999999999999999999999
Q ss_pred Eee
Q 023648 114 EVA 116 (279)
Q Consensus 114 ~a~ 116 (279)
+|.
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 985
No 152
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=4.6e-17 Score=121.16 Aligned_cols=79 Identities=15% Similarity=0.291 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEE-EEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAV-KIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v-~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
...++|||+|||+.+++++|+++|.+||.|..| .|+.+.. .+.|||+|.+.++|++||..|+|..|+|++|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 346799999999999999999999999999999 4777654 345999999999999999999999999999999999
Q ss_pred ecC
Q 023648 116 ATR 118 (279)
Q Consensus 116 ~~~ 118 (279)
.+.
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 876
No 153
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.68 E-value=2.1e-16 Score=127.98 Aligned_cols=81 Identities=28% Similarity=0.545 Sum_probs=75.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
.++|||+|||+.+++++|.++|++||.|..|.|+.+..+ .++|||||+|.+.++|+.||+.|+|..|.|++|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 479999999999999999999999999999999998744 8899999999999999999999999999999999999875
Q ss_pred CC
Q 023648 118 RG 119 (279)
Q Consensus 118 ~~ 119 (279)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 154
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.68 E-value=1.2e-16 Score=117.87 Aligned_cols=77 Identities=27% Similarity=0.463 Sum_probs=62.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcE--ECCeEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRT--IDGRVVRVS 113 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~--i~gr~i~V~ 113 (279)
..+.++|||+|||+++++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++ |++.. +.|+.|.|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 445789999999999999999999999999999999875 78999999999999884 34444 569999999
Q ss_pred EeecCCC
Q 023648 114 EVATRGR 120 (279)
Q Consensus 114 ~a~~~~~ 120 (279)
++.++..
T Consensus 80 ~a~~k~~ 86 (89)
T 3d2w_A 80 NAEPKHN 86 (89)
T ss_dssp ECC----
T ss_pred EcCCCCc
Confidence 9987643
No 155
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=1.3e-16 Score=129.66 Aligned_cols=83 Identities=24% Similarity=0.400 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEee
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~ 116 (279)
+.++|||+|||+.+++++|.++|++||.|..|.|+.++.+ .++|||||+|.+.++|+.|++.|+|..|.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4689999999999999999999999999999999988655 788999999999999999999999999999999999997
Q ss_pred cCCC
Q 023648 117 TRGR 120 (279)
Q Consensus 117 ~~~~ 120 (279)
+...
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 6543
No 156
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=1.7e-16 Score=124.23 Aligned_cols=75 Identities=17% Similarity=0.197 Sum_probs=67.8
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceE-EEEEEcChHHHHHHHHhcCCcEECC--eEEEEEEee
Q 023648 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCY-GFVTFGNPRSAVDAINDMNGRTIDG--RVVRVSEVA 116 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~-afV~f~~~~~A~~Al~~l~g~~i~g--r~i~V~~a~ 116 (279)
..|||+||++.+++++|+++|++||.|..|.|+.. .|| |||+|.+.++|+.|++.|||..|.| +.|.|++|+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 35789999999999999999999999999999752 376 9999999999999999999999987 699999998
Q ss_pred cCC
Q 023648 117 TRG 119 (279)
Q Consensus 117 ~~~ 119 (279)
+..
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 764
No 157
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2e-16 Score=127.95 Aligned_cols=81 Identities=25% Similarity=0.490 Sum_probs=75.3
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeecCC
Q 023648 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRG 119 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~~~ 119 (279)
.+|||+|||..+++++|.++|++||.|..|.|+.+..++.+|||||+|.+.++|++|+..|+|..|.|+.|.|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 48999999999999999999999999999999998878899999999999999999999999999999999999986654
Q ss_pred C
Q 023648 120 R 120 (279)
Q Consensus 120 ~ 120 (279)
.
T Consensus 81 ~ 81 (166)
T 3md3_A 81 Q 81 (166)
T ss_dssp C
T ss_pred C
Confidence 3
No 158
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.67 E-value=1.8e-16 Score=134.98 Aligned_cols=79 Identities=29% Similarity=0.543 Sum_probs=73.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeecC
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~~ 118 (279)
..+|||+|||+.+++++|.++|++||.|..|.|+.+..+ .+|||||+|.+.++|++||+.|||..|+|++|.|.++.++
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~-~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE-EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCC-CceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 468999999999999999999999999999999987544 7899999999999999999999999999999999999764
No 159
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.67 E-value=2.2e-16 Score=134.15 Aligned_cols=78 Identities=26% Similarity=0.288 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCC-CCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 37 DDESSVYVGGLP-YSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 37 ~~~~~l~V~nLp-~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
.+.++|||+||| +.+++++|.++|++||.|..|+|+.+ .+|||||+|.+.++|+.||+.|||..|.|++|.|.++
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 356899999999 89999999999999999999999875 4789999999999999999999999999999999998
Q ss_pred ecC
Q 023648 116 ATR 118 (279)
Q Consensus 116 ~~~ 118 (279)
+..
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 654
No 160
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=8.1e-17 Score=118.04 Aligned_cols=79 Identities=28% Similarity=0.455 Sum_probs=67.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEee
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~ 116 (279)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++|+.. ...+.|.+|.|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 45689999999999999999999999999999999865 689999999999999865432 356699999999998
Q ss_pred cCCCC
Q 023648 117 TRGRK 121 (279)
Q Consensus 117 ~~~~~ 121 (279)
++...
T Consensus 77 ~~~~~ 81 (88)
T 1wf0_A 77 PKHNS 81 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 161
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.66 E-value=2.9e-16 Score=132.79 Aligned_cols=85 Identities=25% Similarity=0.509 Sum_probs=78.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
....+|||+|||..+++++|+++|++||.|..|.|+.+..+ .++|||||+|.+.++|.+||..|+|..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45679999999999999999999999999999999998755 78999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 023648 116 ATRGRK 121 (279)
Q Consensus 116 ~~~~~~ 121 (279)
.+....
T Consensus 203 ~~~~~~ 208 (216)
T 2qfj_A 203 VTPPMP 208 (216)
T ss_dssp SSCSST
T ss_pred cCCCCC
Confidence 876543
No 162
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.66 E-value=5.1e-16 Score=129.55 Aligned_cols=84 Identities=25% Similarity=0.521 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.+..+ .++|||||+|.+.++|++||+.|+|..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 56789999999999999999999999999999999998744 78999999999999999999999999999999999999
Q ss_pred ecCCC
Q 023648 116 ATRGR 120 (279)
Q Consensus 116 ~~~~~ 120 (279)
.+...
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 163
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.66 E-value=4.5e-16 Score=127.03 Aligned_cols=80 Identities=25% Similarity=0.514 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
....+|||+|||..+++++|.++|++||.|..|.|+.+..+ .++|||||+|.+.++|.+|+..|+|..|+|++|.|++|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34689999999999999999999999999999999998644 88999999999999999999999999999999999987
Q ss_pred e
Q 023648 116 A 116 (279)
Q Consensus 116 ~ 116 (279)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 164
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.66 E-value=1.5e-16 Score=137.89 Aligned_cols=80 Identities=26% Similarity=0.397 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCCCC---------cHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEE-
Q 023648 36 IDDESSVYVGGLPYSA---------NEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI- 105 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~---------te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i- 105 (279)
....++|||+||+..+ ++++|.++|++||+|..|.|+. .+|||||+|.+.++|+.|+++|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 3457899999999998 7999999999999999999986 489999999999999999999999999
Q ss_pred -----------CCeEEEEEEeecCCC
Q 023648 106 -----------DGRVVRVSEVATRGR 120 (279)
Q Consensus 106 -----------~gr~i~V~~a~~~~~ 120 (279)
.|+.|.|.+|...+.
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccccCCCCEEEEEEccCCCC
Confidence 899999999986544
No 165
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.66 E-value=2.5e-16 Score=114.80 Aligned_cols=70 Identities=26% Similarity=0.610 Sum_probs=65.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccC----C-------CEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEEC
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKY----G-------SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~ 106 (279)
+..+|||+|||+.+++++|+++|.+| | .|..+.|+.+ +|||||+|.+.++|++|| .|+|..|.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 45799999999999999999999999 8 9999999764 789999999999999999 99999999
Q ss_pred CeEEEEE
Q 023648 107 GRVVRVS 113 (279)
Q Consensus 107 gr~i~V~ 113 (279)
|+.|.|+
T Consensus 79 g~~l~V~ 85 (87)
T 2hzc_A 79 GQSLKIR 85 (87)
T ss_dssp TEECEEE
T ss_pred CeEEEEe
Confidence 9999997
No 166
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.1e-16 Score=116.64 Aligned_cols=75 Identities=25% Similarity=0.371 Sum_probs=66.1
Q ss_pred CCCCe-EEEcCCCCCCcHHH----HHHHhccC-CCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEE
Q 023648 37 DDESS-VYVGGLPYSANEDS----VRKVFDKY-GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (279)
Q Consensus 37 ~~~~~-l~V~nLp~~~te~~----L~~~F~~~-G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i 110 (279)
.|..| |||+|||+.+++++ |+++|++| |+|..| ..|+|||+|.+.++|++|++.|+|..|.|++|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V---------tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI---------TGCSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC---------CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE---------ecCEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 34455 99999999999987 66899999 599988 12899999999999999999999999999999
Q ss_pred EEEEeecCCC
Q 023648 111 RVSEVATRGR 120 (279)
Q Consensus 111 ~V~~a~~~~~ 120 (279)
+|.+|+....
T Consensus 77 ~v~~A~~~sd 86 (96)
T 2diu_A 77 IVSFTPKNRE 86 (96)
T ss_dssp EEESSCCSCC
T ss_pred EEEecCCCcc
Confidence 9999987654
No 167
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.7e-16 Score=122.57 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=70.0
Q ss_pred CeEEEcCC----CCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcC----hHH----HHHHHH--hcCCcE
Q 023648 40 SSVYVGGL----PYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGN----PRS----AVDAIN--DMNGRT 104 (279)
Q Consensus 40 ~~l~V~nL----p~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~----~~~----A~~Al~--~l~g~~ 104 (279)
+.|||+|| |+.|++.+|+++|+.||+|..|.++.|+.| .++|||||+|.+ +++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999999999999 999999999996 433 888988 889999
Q ss_pred ECCeEEEEEEee
Q 023648 105 IDGRVVRVSEVA 116 (279)
Q Consensus 105 i~gr~i~V~~a~ 116 (279)
|+|++|+|.+-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998753
No 168
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.65 E-value=6.6e-16 Score=128.66 Aligned_cols=84 Identities=23% Similarity=0.493 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
.+..+|||+|||+.+++++|.++|++||.|..|.|+.+..+ .++|||||+|.+.++|.+||.. ++..|+|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 34589999999999999999999999999999999998755 7899999999999999999996 799999999999999
Q ss_pred ecCCCC
Q 023648 116 ATRGRK 121 (279)
Q Consensus 116 ~~~~~~ 121 (279)
.++...
T Consensus 181 ~~k~~~ 186 (196)
T 1l3k_A 181 LSKQEM 186 (196)
T ss_dssp C-----
T ss_pred CChhHh
Confidence 877654
No 169
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.65 E-value=6.9e-16 Score=128.56 Aligned_cols=83 Identities=27% Similarity=0.604 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
..+.++|||+|||+.+++++|.++|++||.|..|.|+.+..+ .++|||||+|.+.++|++||+. ++..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 345679999999999999999999999999999999998765 7899999999999999999985 99999999999999
Q ss_pred eecCC
Q 023648 115 VATRG 119 (279)
Q Consensus 115 a~~~~ 119 (279)
+....
T Consensus 89 ~~~~~ 93 (196)
T 1l3k_A 89 AVSRE 93 (196)
T ss_dssp CCC--
T ss_pred ccCcc
Confidence 86543
No 170
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.64 E-value=3.7e-16 Score=121.81 Aligned_cols=78 Identities=19% Similarity=0.371 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
..+.++|||+|| ++++++|+++|++||.|..|.|+. .+|||||+|.+.++|++||+.|+|..|.|+.|.|.++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~-----~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-----PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 356789999996 699999999999999999999863 6889999999999999999999999999999999999
Q ss_pred ecCCC
Q 023648 116 ATRGR 120 (279)
Q Consensus 116 ~~~~~ 120 (279)
.+...
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 87654
No 171
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.64 E-value=1.4e-15 Score=115.65 Aligned_cols=81 Identities=25% Similarity=0.286 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCC-----CCcHHHHHHHhccCCCEEEEEEeeCCCC--CCceEEEEEEcChHHHHHHHHhcCCcEECCeE
Q 023648 37 DDESSVYVGGLPY-----SANEDSVRKVFDKYGSVVAVKIVNDRST--RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRV 109 (279)
Q Consensus 37 ~~~~~l~V~nLp~-----~~te~~L~~~F~~~G~I~~v~i~~d~~~--~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~ 109 (279)
.+..+|+|.||.. +.++++|+++|++||.|..|.|+.++.+ +++|||||+|.+.++|.+|++.|||..|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4567999999963 2368999999999999999999987643 78999999999999999999999999999999
Q ss_pred EEEEEeec
Q 023648 110 VRVSEVAT 117 (279)
Q Consensus 110 i~V~~a~~ 117 (279)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999865
No 172
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.63 E-value=8.9e-16 Score=125.32 Aligned_cols=79 Identities=19% Similarity=0.343 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEEC---CeEEEEE
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID---GRVVRVS 113 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~---gr~i~V~ 113 (279)
.+..+|||+|||+.+++++|+++|++||.|..|.|+.+..+.++|||||+|.+.++|.+||+.|||..+. +++|.|.
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 3567999999999999999999999999999999999877788999999999999999999999998776 4999999
Q ss_pred Ee
Q 023648 114 EV 115 (279)
Q Consensus 114 ~a 115 (279)
+|
T Consensus 173 ~a 174 (175)
T 3nmr_A 173 FA 174 (175)
T ss_dssp EC
T ss_pred ec
Confidence 87
No 173
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.63 E-value=3e-16 Score=127.51 Aligned_cols=79 Identities=16% Similarity=0.445 Sum_probs=74.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
..+|||+|||+.+++++|.++|++||.|..|.|+.+..+ .++|||||+|.+.++|.+||+ |++..|+|++|.|.++.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 569999999999999999999999999999999988655 889999999999999999998 899999999999999976
Q ss_pred C
Q 023648 118 R 118 (279)
Q Consensus 118 ~ 118 (279)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 174
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=8.5e-16 Score=118.27 Aligned_cols=76 Identities=26% Similarity=0.465 Sum_probs=65.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC----CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST----RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~----~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
...++|||+|||+.+++++|+++|++||.|. +.++.+..+ +++|||||+|.+.++|++||+.|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4568999999999999999999999999999 878776553 789999999999999999999983 467777766
Q ss_pred EEe
Q 023648 113 SEV 115 (279)
Q Consensus 113 ~~a 115 (279)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 175
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.62 E-value=1.7e-15 Score=122.99 Aligned_cols=80 Identities=29% Similarity=0.520 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECC--eEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDG--RVVRV 112 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~g--r~i~V 112 (279)
..+..+|||+|||..+++++|.++|++||.|..|.|+.+..+ .++|||||+|.+.++|.+|+..|+|..|.| ++|.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 345689999999999999999999999999999999998744 789999999999999999999999999988 99999
Q ss_pred EEe
Q 023648 113 SEV 115 (279)
Q Consensus 113 ~~a 115 (279)
.+|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 886
No 176
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.62 E-value=1.9e-15 Score=127.15 Aligned_cols=78 Identities=21% Similarity=0.280 Sum_probs=71.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
.++|||+|||+.+++++|+++|++||.|..|.|+.+..+.++|||||+|.+.++|++||..+ +..|+|++|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 36999999999999999999999999999999999877788999999999999999999865 5699999999997653
No 177
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.61 E-value=1.1e-15 Score=129.26 Aligned_cols=79 Identities=30% Similarity=0.579 Sum_probs=72.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
.++|||+|||..+++++|+++|++||.|..|.|+.+..+ ..+|||||+|.+.++|++||+.|++..|.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 469999999999999999999999999999999988755 7899999999999999999999999999999999987654
No 178
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.60 E-value=4.4e-15 Score=131.13 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEEC-CeEEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID-GRVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~-gr~i~V~~ 114 (279)
..+.++|||+|||..+++++|+++|++||.|..|.|+.+. +|||||+|.+.++|.+||+.|||..|. |+.|+|.|
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 3457899999999999999999999999999999998653 589999999999999999999999999 99999999
Q ss_pred ee
Q 023648 115 VA 116 (279)
Q Consensus 115 a~ 116 (279)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 85
No 179
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.60 E-value=1.9e-15 Score=123.40 Aligned_cols=83 Identities=25% Similarity=0.506 Sum_probs=74.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC---CCceEEEEEEcChHHHHHHHHhcCCcEEC---CeEEE
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST---RGKCYGFVTFGNPRSAVDAINDMNGRTID---GRVVR 111 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~---~~~g~afV~f~~~~~A~~Al~~l~g~~i~---gr~i~ 111 (279)
+.++|||+|||+.+++++|.++|++||+|..|.|+.+..+ ..+|||||+|.+.++|++||+.|++..+. +..|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4579999999999999999999999999999999988776 68999999999999999999999998876 67888
Q ss_pred EEEeecCCC
Q 023648 112 VSEVATRGR 120 (279)
Q Consensus 112 V~~a~~~~~ 120 (279)
|.++.....
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 887765543
No 180
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.60 E-value=2.3e-15 Score=123.37 Aligned_cols=78 Identities=19% Similarity=0.391 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEee
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~ 116 (279)
.+..+|||+|||+.+++++|+++|++||.|..+ ...+..+|||||+|.+.++|.+||..|+|..|.|+.|.|.++.
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 356799999999999999999999999998766 3344789999999999999999999999999999999999997
Q ss_pred cC
Q 023648 117 TR 118 (279)
Q Consensus 117 ~~ 118 (279)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 181
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.59 E-value=3.3e-15 Score=120.84 Aligned_cols=78 Identities=27% Similarity=0.587 Sum_probs=71.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeE--EEEEE
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRV--VRVSE 114 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~--i~V~~ 114 (279)
+..+|||+|||..+++++|.++|++||.|..+.|+.+..+ .++|||||+|.+.++|.+|++.|||..|.|+. |.|.|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 4578999999999999999999999999999999988755 78999999999999999999999999999964 88877
Q ss_pred e
Q 023648 115 V 115 (279)
Q Consensus 115 a 115 (279)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 182
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.59 E-value=5.6e-15 Score=130.42 Aligned_cols=83 Identities=19% Similarity=0.410 Sum_probs=74.7
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHH----HHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVR----KVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i 110 (279)
...+.++|||+|||+.+++++|+ ++|.+||.|..|.|+. .++.+|||||+|.+.++|++||+.|+|..|.|+.|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 34567899999999999999966 8999999999999875 34688999999999999999999999999999999
Q ss_pred EEEEeecCC
Q 023648 111 RVSEVATRG 119 (279)
Q Consensus 111 ~V~~a~~~~ 119 (279)
.|.++....
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999996544
No 183
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.58 E-value=2.3e-15 Score=129.49 Aligned_cols=81 Identities=23% Similarity=0.357 Sum_probs=74.5
Q ss_pred CCCCCCeEEEcCCCC-CCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEE
Q 023648 35 TIDDESSVYVGGLPY-SANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~ 113 (279)
...+.++|||+|||+ .+++++|+++|++||.|..|.|+.+. +|||||+|.+.++|++||+.|+|..|.|+.|.|.
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345678999999999 99999999999999999999998874 7899999999999999999999999999999999
Q ss_pred EeecCC
Q 023648 114 EVATRG 119 (279)
Q Consensus 114 ~a~~~~ 119 (279)
++....
T Consensus 106 ~a~~~~ 111 (229)
T 2adc_A 106 LSKHQN 111 (229)
T ss_dssp CCSCCC
T ss_pred EecCcc
Confidence 987553
No 184
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.58 E-value=4.6e-15 Score=131.65 Aligned_cols=83 Identities=23% Similarity=0.424 Sum_probs=76.5
Q ss_pred CCCCCCeEEEcCCCCC-CcHHHHHHHhccCCCEEEEEEeeCCC--CCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEE
Q 023648 35 TIDDESSVYVGGLPYS-ANEDSVRKVFDKYGSVVAVKIVNDRS--TRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~--~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~ 111 (279)
...+..+|||+|||+. +++++|.++|++||.|..|.|+.+.. +.++|||||+|.+.++|.+|| .|||..|.|++|.
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 3456789999999999 99999999999999999999999877 688999999999999999999 9999999999999
Q ss_pred EEEeecC
Q 023648 112 VSEVATR 118 (279)
Q Consensus 112 V~~a~~~ 118 (279)
|.++.++
T Consensus 285 V~~a~~k 291 (292)
T 2ghp_A 285 VSLADKK 291 (292)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999875
No 185
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.57 E-value=4.1e-15 Score=120.69 Aligned_cols=78 Identities=31% Similarity=0.715 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEee
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~ 116 (279)
+.++|||+|||+.+++++|.++|++||.|..|.|+.+..+ .++|||||+|.+.++|++||.. +..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 3579999999999999999999999999999999998765 8899999999999999999994 679999999998875
Q ss_pred c
Q 023648 117 T 117 (279)
Q Consensus 117 ~ 117 (279)
+
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 4
No 186
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.57 E-value=1.1e-14 Score=128.66 Aligned_cols=85 Identities=16% Similarity=0.223 Sum_probs=78.6
Q ss_pred CCCCCeEEEcCCCCCC-cHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 36 IDDESSVYVGGLPYSA-NEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~-te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
..+..+|||+|||+.+ ++++|.++|++||.|..|.|+.+..+.++|||||+|.+.++|.+||..|+|..|+|++|.|.+
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 3567899999999995 999999999999999999999988778899999999999999999999999999999999999
Q ss_pred eecCCC
Q 023648 115 VATRGR 120 (279)
Q Consensus 115 a~~~~~ 120 (279)
+.+...
T Consensus 261 a~~~~~ 266 (284)
T 3smz_A 261 CAPGPP 266 (284)
T ss_dssp CCSSSC
T ss_pred ecCCCc
Confidence 977543
No 187
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.1e-14 Score=109.17 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=69.1
Q ss_pred CCCCeEEEcCCCCCCc-----------HHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEE
Q 023648 37 DDESSVYVGGLPYSAN-----------EDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI 105 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~t-----------e~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i 105 (279)
.+..+|+|.||..... +++|+++|++||.|..|.| .+. .++|||||+|.+.++|++||..|||..|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4567999999954432 5799999999999999966 433 3789999999999999999999999999
Q ss_pred CCeEEEEEEeecCCC
Q 023648 106 DGRVVRVSEVATRGR 120 (279)
Q Consensus 106 ~gr~i~V~~a~~~~~ 120 (279)
+|++|.|.++.+...
T Consensus 90 ~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 90 GGRQITAQAWDGTTD 104 (112)
T ss_dssp TTEECEEEECCSCCC
T ss_pred CCcEEEEEEeCCCCC
Confidence 999999999976543
No 188
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.55 E-value=2.7e-15 Score=113.89 Aligned_cols=73 Identities=19% Similarity=0.344 Sum_probs=65.2
Q ss_pred EEcCCCCCCcHHHHHHHh------------ccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEE
Q 023648 43 YVGGLPYSANEDSVRKVF------------DKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (279)
Q Consensus 43 ~V~nLp~~~te~~L~~~F------------~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i 110 (279)
++.+||+.+++++|+++| ++||.|..|.|+.+..++++|||||+|.+.++|++|+..|||..|+|++|
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 367788888888777666 99999999999988777889999999999999999999999999999999
Q ss_pred EEEEe
Q 023648 111 RVSEV 115 (279)
Q Consensus 111 ~V~~a 115 (279)
.|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 189
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.54 E-value=1.6e-14 Score=109.72 Aligned_cols=81 Identities=22% Similarity=0.274 Sum_probs=69.6
Q ss_pred CCCeEEEcCC--CCCC--------cHHHHHHHhccCCCEEEEEEeeCCCC---CCceEEEEEEcChHHHHHHHHhcCCcE
Q 023648 38 DESSVYVGGL--PYSA--------NEDSVRKVFDKYGSVVAVKIVNDRST---RGKCYGFVTFGNPRSAVDAINDMNGRT 104 (279)
Q Consensus 38 ~~~~l~V~nL--p~~~--------te~~L~~~F~~~G~I~~v~i~~d~~~---~~~g~afV~f~~~~~A~~Al~~l~g~~ 104 (279)
|...|.|.|+ |..+ .+++|+++|++||.|..|.|+.+..+ .++|||||+|.+.++|++|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5668888887 3333 34689999999999999999988754 578999999999999999999999999
Q ss_pred ECCeEEEEEEeecC
Q 023648 105 IDGRVVRVSEVATR 118 (279)
Q Consensus 105 i~gr~i~V~~a~~~ 118 (279)
|+|++|.|.++...
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999998643
No 190
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.53 E-value=1.6e-14 Score=124.13 Aligned_cols=79 Identities=19% Similarity=0.373 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCC-CEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEEC-CeEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYG-SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID-GRVVRVS 113 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~-gr~i~V~ 113 (279)
..+..+|||+|||..+++++|+++|.+|| .|..|.|+.. .+|||||+|.+.++|.+||..|+|..|. |++|.|.
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 45678999999999999999999999999 9999999653 4789999999999999999999999999 9999999
Q ss_pred EeecC
Q 023648 114 EVATR 118 (279)
Q Consensus 114 ~a~~~ 118 (279)
+++++
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 99764
No 191
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.53 E-value=4.1e-14 Score=124.97 Aligned_cols=84 Identities=23% Similarity=0.345 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
.+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..+ .++|||||+|.+.++|..|+..|+|..|.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 45679999999999999999999999999999999988755 78999999999999999999999999999999999999
Q ss_pred ecCCC
Q 023648 116 ATRGR 120 (279)
Q Consensus 116 ~~~~~ 120 (279)
.+...
T Consensus 173 ~~~~~ 177 (284)
T 3smz_A 173 DAGQL 177 (284)
T ss_dssp CGGGC
T ss_pred CCCCC
Confidence 77543
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.53 E-value=5.8e-15 Score=123.58 Aligned_cols=77 Identities=25% Similarity=0.393 Sum_probs=72.0
Q ss_pred CCeEEEcCCCC-CCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeec
Q 023648 39 ESSVYVGGLPY-SANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 39 ~~~l~V~nLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~ 117 (279)
.++|||+|||+ .+++++|+++|++||.|..|.|+.+. +|||||+|.+.++|+.||..|+|..|.|+.|.|.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 57999999999 99999999999999999999998763 78999999999999999999999999999999999876
Q ss_pred CC
Q 023648 118 RG 119 (279)
Q Consensus 118 ~~ 119 (279)
..
T Consensus 79 ~~ 80 (198)
T 1qm9_A 79 QN 80 (198)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.53 E-value=8.3e-15 Score=122.63 Aligned_cols=78 Identities=19% Similarity=0.374 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCC-CEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEEC-CeEEEEEE
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYG-SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID-GRVVRVSE 114 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~-gr~i~V~~ 114 (279)
.+..+|||+|||..+++++|.++|++|| .|..|.|+.+ .+|||||+|.+.++|.+||..|+|..|+ |++|.|.+
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 4578999999999999999999999999 9999999764 4789999999999999999999999999 99999999
Q ss_pred eecC
Q 023648 115 VATR 118 (279)
Q Consensus 115 a~~~ 118 (279)
+++.
T Consensus 194 a~~~ 197 (198)
T 1qm9_A 194 SKST 197 (198)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9764
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.53 E-value=1.1e-14 Score=127.59 Aligned_cols=78 Identities=23% Similarity=0.491 Sum_probs=71.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
...+.++|||+|||+.+|+++|.++|++||.|..|.|+. .+|||||+|.+.++|..||..|+|..|.|+.|.|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 345567999999999999999999999999999999975 478999999999999999999999999999999998
Q ss_pred eec
Q 023648 115 VAT 117 (279)
Q Consensus 115 a~~ 117 (279)
+.+
T Consensus 93 a~~ 95 (261)
T 3sde_A 93 ATH 95 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 864
No 195
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.52 E-value=1.1e-14 Score=123.52 Aligned_cols=79 Identities=11% Similarity=0.229 Sum_probs=69.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCE--EEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCe----E
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSV--VAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGR----V 109 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I--~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr----~ 109 (279)
..+..+|||+|||+.+++++|+++|++||.| ..|.|+.+. +..+|||||+|.+.++|.+||..|||..|.|. +
T Consensus 120 ~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 120 QHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 3567899999999999999999999999999 889988765 44569999999999999999999999999887 5
Q ss_pred EEEEEe
Q 023648 110 VRVSEV 115 (279)
Q Consensus 110 i~V~~a 115 (279)
|.|+++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 666654
No 196
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.51 E-value=6.3e-14 Score=108.66 Aligned_cols=80 Identities=23% Similarity=0.265 Sum_probs=69.5
Q ss_pred CCCeEEEcCCCC--CC---cHHHHHHHhccCCCEEEEEEeeCCCC-----CCceEEEEEEcChHHHHHHHHhcCCcEECC
Q 023648 38 DESSVYVGGLPY--SA---NEDSVRKVFDKYGSVVAVKIVNDRST-----RGKCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (279)
Q Consensus 38 ~~~~l~V~nLp~--~~---te~~L~~~F~~~G~I~~v~i~~d~~~-----~~~g~afV~f~~~~~A~~Al~~l~g~~i~g 107 (279)
+..+|+|.|+-. ++ .+++|+++|++||.|..|.|+.+..+ +.+|||||+|.+.++|.+|+..|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 567999999832 22 46899999999999999999987542 467999999999999999999999999999
Q ss_pred eEEEEEEeec
Q 023648 108 RVVRVSEVAT 117 (279)
Q Consensus 108 r~i~V~~a~~ 117 (279)
+.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999854
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.50 E-value=3.4e-14 Score=126.04 Aligned_cols=84 Identities=12% Similarity=0.299 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCC-CEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYG-SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
...++|||+|||+.+++++|.++|.+|| .|..|.|+.+..+..+|||||+|.+.++|..||..|+|..|.|+.|.|.++
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4578999999999999999999999999 999999998877778999999999999999999999999999999999999
Q ss_pred ecCCC
Q 023648 116 ATRGR 120 (279)
Q Consensus 116 ~~~~~ 120 (279)
.+...
T Consensus 195 ~~~~~ 199 (292)
T 2ghp_A 195 NPLEK 199 (292)
T ss_dssp CCC--
T ss_pred CCCcc
Confidence 76544
No 198
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.50 E-value=4.3e-15 Score=121.75 Aligned_cols=83 Identities=13% Similarity=0.306 Sum_probs=70.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEe
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a 115 (279)
..+.++|||+|||+.+++++|+++|..||.|..+.|.....+..+|||||+|.+.++|++||+ |+|..|.|++|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 456789999999999999999999999998765333322333688999999999999999995 9999999999999998
Q ss_pred ecCC
Q 023648 116 ATRG 119 (279)
Q Consensus 116 ~~~~ 119 (279)
.+..
T Consensus 89 ~~~~ 92 (175)
T 1fje_B 89 KGRD 92 (175)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7653
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.49 E-value=7.5e-14 Score=113.71 Aligned_cols=75 Identities=23% Similarity=0.531 Sum_probs=67.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccC----C-------CEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEEC
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKY----G-------SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~ 106 (279)
+.++|||+|||+.+++++|.++|++| | .|..+.+.. .+|||||+|.+.++|++|| .|+|..|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----TTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----CCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 45799999999999999999999999 7 788888765 4789999999999999999 89999999
Q ss_pred CeEEEEEEeecC
Q 023648 107 GRVVRVSEVATR 118 (279)
Q Consensus 107 gr~i~V~~a~~~ 118 (279)
|++|.|.++...
T Consensus 77 g~~i~v~~~~~~ 88 (172)
T 2g4b_A 77 GQSLKIRRPHDY 88 (172)
T ss_dssp TEECEEECCSSC
T ss_pred CceeeecCCccc
Confidence 999999987554
No 200
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.49 E-value=8.9e-14 Score=121.90 Aligned_cols=83 Identities=22% Similarity=0.314 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhc-CCcEEC---CeEEEE
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM-NGRTID---GRVVRV 112 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l-~g~~i~---gr~i~V 112 (279)
.+..+|||+|||+.+++++|.++|.+||.|..|.|+.+..+.++|||||+|.+.++|.+||..| ++..+. +++|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4567999999999999999999999999999999999876688999999999999999999999 555555 999999
Q ss_pred EEeecCC
Q 023648 113 SEVATRG 119 (279)
Q Consensus 113 ~~a~~~~ 119 (279)
.++.+..
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9987653
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.49 E-value=9.1e-14 Score=115.79 Aligned_cols=76 Identities=22% Similarity=0.505 Sum_probs=67.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhccC----C-------CEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEEC
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDKY----G-------SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~ 106 (279)
..++|||+|||+.+++++|.++|++| | .|..+.+.. .+|||||+|.+.++|++|| .|+|..|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~-----~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET-----TTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC-----CCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 46799999999999999999999999 5 677777754 5789999999999999999 79999999
Q ss_pred CeEEEEEEeecCC
Q 023648 107 GRVVRVSEVATRG 119 (279)
Q Consensus 107 gr~i~V~~a~~~~ 119 (279)
|+.|.|.++....
T Consensus 77 g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 77 GQSLKIRRPHDYQ 89 (198)
T ss_dssp TEEEEEECCCCCC
T ss_pred CceEEEeCCCCCC
Confidence 9999999886543
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.44 E-value=1.9e-13 Score=124.35 Aligned_cols=79 Identities=20% Similarity=0.313 Sum_probs=67.8
Q ss_pred hcCCCCCCCeEEEcC--CCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEEC---
Q 023648 32 VKMTIDDESSVYVGG--LPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID--- 106 (279)
Q Consensus 32 ~~~~~~~~~~l~V~n--Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~--- 106 (279)
......+..+|||+| |++.+++++|+++|++||+|..|.|+. .+|||||+|.+.++|++||+.|||+.+.
T Consensus 11 v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~ 85 (345)
T 3tht_A 11 IETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 85 (345)
T ss_dssp CCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred ceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCcccccc
Confidence 344567788999999 578999999999999999999987754 5789999999999999999999999883
Q ss_pred Ce--EEEEEEe
Q 023648 107 GR--VVRVSEV 115 (279)
Q Consensus 107 gr--~i~V~~a 115 (279)
|+ .|.|.++
T Consensus 86 g~~~~ly~~~~ 96 (345)
T 3tht_A 86 GQKITLYLNFV 96 (345)
T ss_dssp SCEEECEEEEC
T ss_pred CCceEEEEEEe
Confidence 44 6777776
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=4e-13 Score=101.05 Aligned_cols=67 Identities=16% Similarity=0.287 Sum_probs=58.9
Q ss_pred CCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEEeecCCCC
Q 023648 49 YSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRK 121 (279)
Q Consensus 49 ~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~a~~~~~~ 121 (279)
..+++++|+++|++||.|..|.|+. ..+|||||+|.+.++|+.||+.+++ +.|++|.|+++.+....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCC
Confidence 5689999999999999999999983 4789999999999999999998654 68999999999776543
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.36 E-value=2.4e-12 Score=99.13 Aligned_cols=77 Identities=17% Similarity=0.282 Sum_probs=63.6
Q ss_pred CCCeEEEcCCCC--C--------CcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECC
Q 023648 38 DESSVYVGGLPY--S--------ANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (279)
Q Consensus 38 ~~~~l~V~nLp~--~--------~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~g 107 (279)
+...|.|.|+=. + -.+++|+++|++||.|..|.|+.+. .+|||||+|.+.++|++|++.|||..|+|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 345677777621 1 1245789999999999999987653 58999999999999999999999999999
Q ss_pred eEEEEEEeec
Q 023648 108 RVVRVSEVAT 117 (279)
Q Consensus 108 r~i~V~~a~~ 117 (279)
+.|.|+++..
T Consensus 83 R~i~v~~~~~ 92 (114)
T 3s6e_A 83 KMITAAYVPL 92 (114)
T ss_dssp EECEEEEECH
T ss_pred EEEEEEEEcH
Confidence 9999999853
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1.3e-11 Score=95.62 Aligned_cols=79 Identities=13% Similarity=0.197 Sum_probs=69.9
Q ss_pred cCCCCCCCeEEEcCCCCC-CcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcC-hHHHHHHHHhcC--CcEECCe
Q 023648 33 KMTIDDESSVYVGGLPYS-ANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGN-PRSAVDAINDMN--GRTIDGR 108 (279)
Q Consensus 33 ~~~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~-~~~A~~Al~~l~--g~~i~gr 108 (279)
...+.+++.|||+||+.. ++.++|+++|++||+|..|.|+.+.. .|||.|.+ ..+|..|+.+|+ +..|.|.
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 345678899999999999 99999999999999999999988643 69999999 899999999994 7889999
Q ss_pred EEEEEEee
Q 023648 109 VVRVSEVA 116 (279)
Q Consensus 109 ~i~V~~a~ 116 (279)
.++++...
T Consensus 87 ~~~~evL~ 94 (121)
T 1owx_A 87 EVTWEVLE 94 (121)
T ss_dssp SEEEEECC
T ss_pred EEEEEECC
Confidence 88888663
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=1.6e-11 Score=89.67 Aligned_cols=75 Identities=23% Similarity=0.410 Sum_probs=63.6
Q ss_pred CCCCeEEEcCCC----CCCcH----HHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCe
Q 023648 37 DDESSVYVGGLP----YSANE----DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGR 108 (279)
Q Consensus 37 ~~~~~l~V~nLp----~~~te----~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr 108 (279)
+|..||+|.-++ .++.. .+|.+.|.+||.|..++|+.+ .+||+|.+.++|.+||+ |||..|+|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeEeCCe
Confidence 456788887766 23323 578999999999999999876 38999999999999998 999999999
Q ss_pred EEEEEEeecCC
Q 023648 109 VVRVSEVATRG 119 (279)
Q Consensus 109 ~i~V~~a~~~~ 119 (279)
.|+|+++++.-
T Consensus 77 ~LkV~lkt~dW 87 (91)
T 2dnr_A 77 TITIALKSPSG 87 (91)
T ss_dssp EEEEEECCCSS
T ss_pred EEEEEeCCCCc
Confidence 99999998754
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.05 E-value=6.9e-10 Score=94.58 Aligned_cols=82 Identities=22% Similarity=0.245 Sum_probs=66.9
Q ss_pred CCCCCeEEEcCCC-----CCCcHHHHHHHhccCCCEEEEEEeeCCCC-----CCceEEEEEEcChHHHHHHHHhcCCcEE
Q 023648 36 IDDESSVYVGGLP-----YSANEDSVRKVFDKYGSVVAVKIVNDRST-----RGKCYGFVTFGNPRSAVDAINDMNGRTI 105 (279)
Q Consensus 36 ~~~~~~l~V~nLp-----~~~te~~L~~~F~~~G~I~~v~i~~d~~~-----~~~g~afV~f~~~~~A~~Al~~l~g~~i 105 (279)
......+.+.|+- ..-.+++|.+.|++||.|..|.|+.+..+ +++|++||+|.+.++|.+|++.|||..|
T Consensus 121 ~~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~ 200 (222)
T 3dxb_A 121 AMESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 200 (222)
T ss_dssp CCBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred ccccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE
Confidence 3344555555552 23356789999999999999999865443 7899999999999999999999999999
Q ss_pred CCeEEEEEEeec
Q 023648 106 DGRVVRVSEVAT 117 (279)
Q Consensus 106 ~gr~i~V~~a~~ 117 (279)
+|+.|.|.++..
T Consensus 201 ~gr~i~~~~~~~ 212 (222)
T 3dxb_A 201 AGRKVVAEVYDQ 212 (222)
T ss_dssp SSSBCEEEECCH
T ss_pred CCeEEEEEEcCH
Confidence 999999998753
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=1.2e-10 Score=85.47 Aligned_cols=74 Identities=24% Similarity=0.410 Sum_probs=62.5
Q ss_pred CCCCCCeEEEcCCCCC-----C-cH---HHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEE
Q 023648 35 TIDDESSVYVGGLPYS-----A-NE---DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI 105 (279)
Q Consensus 35 ~~~~~~~l~V~nLp~~-----~-te---~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i 105 (279)
..+|..||+|.-++.. + .+ .+|.+.|.+||.|..++|+.+ -+||+|.+.++|.+||+ |+|..|
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-------~~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-------QMLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-------EEEEECSCSHHHHHHHH-GGGSEE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-------cEEEEEcChHHHHHHHh-cCCeee
Confidence 3466789999887642 2 21 468999999999999999887 39999999999999999 999999
Q ss_pred CCeEEEEEEee
Q 023648 106 DGRVVRVSEVA 116 (279)
Q Consensus 106 ~gr~i~V~~a~ 116 (279)
+|+.|+|.+..
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999998754
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.42 E-value=8.4e-07 Score=66.48 Aligned_cols=73 Identities=15% Similarity=0.248 Sum_probs=66.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccC-----CCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEE
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKY-----GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~-----G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~ 111 (279)
+...+|-|-|||..++...|..+++.| |.|+.|.++.+. +-|+|+|.+...|-+|.-+|+|..|.|++|+
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-----TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-----CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 346788899999999999999999999 999999998874 3699999999999999999999999999999
Q ss_pred EEE
Q 023648 112 VSE 114 (279)
Q Consensus 112 V~~ 114 (279)
|--
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 853
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.09 E-value=9.2e-06 Score=60.46 Aligned_cols=76 Identities=16% Similarity=0.143 Sum_probs=63.6
Q ss_pred CCCeEEEcCCCCCC-c----HHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 38 DESSVYVGGLPYSA-N----EDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 38 ~~~~l~V~nLp~~~-t----e~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
-+++|+|+||+.++ . ...++.+|..|+++..+.+... -.=..|.|.+.++|.+|-..|++..|+|.+|+|
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 35799999998866 2 2567999999999988777653 225789999999999999999999999999999
Q ss_pred EEeecC
Q 023648 113 SEVATR 118 (279)
Q Consensus 113 ~~a~~~ 118 (279)
-++.+.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998743
No 211
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.81 E-value=0.00011 Score=56.14 Aligned_cols=73 Identities=19% Similarity=0.304 Sum_probs=58.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECC-eEEEEEE
Q 023648 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG-RVVRVSE 114 (279)
Q Consensus 36 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~g-r~i~V~~ 114 (279)
....+-|.|-++|+.. ...|..+|++||.|....... ...+..|.|.+..+|++||. .||..|+| -.|-|..
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~-----~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN-----TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS-----SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC-----CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 3446788899999885 566788899999999877632 34599999999999999999 59999985 5666655
Q ss_pred e
Q 023648 115 V 115 (279)
Q Consensus 115 a 115 (279)
.
T Consensus 94 ~ 94 (119)
T 1wwh_A 94 C 94 (119)
T ss_dssp C
T ss_pred C
Confidence 3
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.62 E-value=0.00039 Score=50.64 Aligned_cols=77 Identities=10% Similarity=0.141 Sum_probs=62.3
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC---CCceEEEEEEcChHHHHHHHHhcCCcEECC-----eEEE
Q 023648 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST---RGKCYGFVTFGNPRSAVDAINDMNGRTIDG-----RVVR 111 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~---~~~g~afV~f~~~~~A~~Al~~l~g~~i~g-----r~i~ 111 (279)
++|.|.+||+.+||+++.+.+..+..+.....+..+.. ..-.-|||.|.+.+++....+.++|..+-+ .+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 47899999999999999999999998887777765543 344679999999999999999999998742 2335
Q ss_pred EEEee
Q 023648 112 VSEVA 116 (279)
Q Consensus 112 V~~a~ 116 (279)
|++|-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66653
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.50 E-value=0.00023 Score=52.20 Aligned_cols=54 Identities=19% Similarity=0.430 Sum_probs=45.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhc
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM 100 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l 100 (279)
...++| .+|.++...+|.++|+.||.|. |..+.|. -|||.|.+.+.|..||..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT------EEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC------eEEEEecCHHHHHHHHHhc
Confidence 456777 9999999999999999999543 5555552 7999999999999999966
No 214
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.50 E-value=0.00079 Score=49.85 Aligned_cols=72 Identities=21% Similarity=0.399 Sum_probs=60.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhcc-----CCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEE
Q 023648 38 DESSVYVGGLPYSANEDSVRKVFDK-----YGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (279)
Q Consensus 38 ~~~~l~V~nLp~~~te~~L~~~F~~-----~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V 112 (279)
-..+|.|.|||..+.++.|+-+|+. =|+|..|.... +-|+|+|.+...|+..|+. ..+.|.+.+|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ-ADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC-CcceecCeEEEE
Confidence 3569999999999999999999987 27888888753 4789999999999999983 367889999999
Q ss_pred EEeec
Q 023648 113 SEVAT 117 (279)
Q Consensus 113 ~~a~~ 117 (279)
....+
T Consensus 79 ~P~~~ 83 (104)
T 2dhx_A 79 RPAPP 83 (104)
T ss_dssp EECCC
T ss_pred EcCCC
Confidence 76543
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.45 E-value=0.00024 Score=52.17 Aligned_cols=54 Identities=19% Similarity=0.406 Sum_probs=45.2
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcC
Q 023648 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~ 101 (279)
..|+| ++|.++...+|.++|+.|| -..|..+.|. -|||.|.+.+.|..||..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 45666 9999999999999999999 4446666652 79999999999999999764
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.81 E-value=0.0026 Score=46.61 Aligned_cols=77 Identities=10% Similarity=0.104 Sum_probs=56.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCC---CCceEEEEEEcChHHHHHHHHhcCCcEECC-----eEEE
Q 023648 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST---RGKCYGFVTFGNPRSAVDAINDMNGRTIDG-----RVVR 111 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~---~~~g~afV~f~~~~~A~~Al~~l~g~~i~g-----r~i~ 111 (279)
-+|.|..||+.+||+++.+.+..+=++.....+..+.+ ..-.-|||.|.+.+++....+.++|..+-+ -+..
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~ 89 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAV 89 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeE
Confidence 47999999999999999888877655544333333322 123468999999999999999999988743 2445
Q ss_pred EEEee
Q 023648 112 VSEVA 116 (279)
Q Consensus 112 V~~a~ 116 (279)
|++|.
T Consensus 90 VE~AP 94 (97)
T 2l08_A 90 VEFAP 94 (97)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 66663
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.72 E-value=0.003 Score=48.80 Aligned_cols=76 Identities=26% Similarity=0.508 Sum_probs=54.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEE-EEEeeC--------C-CC-----CCceEEEEEEcChHHHHHHHHhcCCc
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVA-VKIVND--------R-ST-----RGKCYGFVTFGNPRSAVDAINDMNGR 103 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~-v~i~~d--------~-~~-----~~~g~afV~f~~~~~A~~Al~~l~g~ 103 (279)
...|.|-++|+... ..+..+|++||.|.. +.+... . .. ....+..|.|.+..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 45677889987665 456678999999865 222110 0 00 124588999999999999999 6999
Q ss_pred EECCeEEEEEEee
Q 023648 104 TIDGRVVRVSEVA 116 (279)
Q Consensus 104 ~i~gr~i~V~~a~ 116 (279)
.|+|..|-|....
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999988887664
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.17 E-value=0.0024 Score=59.85 Aligned_cols=56 Identities=18% Similarity=0.234 Sum_probs=42.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHh
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIND 99 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~ 99 (279)
..+|||. .|..+++.+|.++|.+||+|..+.+-.+ ...||.|||.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~----~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES----FGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS----SSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc----CCeEEEEEeCCHHHHHHHHhc
Confidence 4689997 7999999999999999999999888765 346999999999999977653
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.69 E-value=0.007 Score=47.78 Aligned_cols=35 Identities=9% Similarity=-0.018 Sum_probs=28.4
Q ss_pred EEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCc
Q 023648 68 AVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGR 103 (279)
Q Consensus 68 ~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~ 103 (279)
.++|+.+.. ..+|||||+|.+.++|++||..+++.
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhccc
Confidence 356666644 58999999999999999999887753
No 220
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=95.09 E-value=0.11 Score=48.38 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=15.5
Q ss_pred EEcChHHHHHHHHhcCCcEECCeEEE
Q 023648 86 TFGNPRSAVDAINDMNGRTIDGRVVR 111 (279)
Q Consensus 86 ~f~~~~~A~~Al~~l~g~~i~gr~i~ 111 (279)
.|......+.|..+|. .|+|..|.
T Consensus 147 aFV~F~~~e~A~~Ai~--~lng~~i~ 170 (437)
T 3pgw_S 147 AFIEYEHERDMHSAYK--HADGKKID 170 (437)
T ss_pred EEEeeccHHHHHHHHH--HcCCCEEC
Confidence 4556667777777764 46776664
No 221
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.02 E-value=0.0049 Score=48.41 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=36.0
Q ss_pred CCceEEEEEEcChHHHHHHHHhc-CCcEECCeEEEEEEeec
Q 023648 78 RGKCYGFVTFGNPRSAVDAINDM-NGRTIDGRVVRVSEVAT 117 (279)
Q Consensus 78 ~~~g~afV~f~~~~~A~~Al~~l-~g~~i~gr~i~V~~a~~ 117 (279)
..+|+++|+|.+.++|++||+.| ||..|+| .|.|.++..
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 57899999999999999999999 9999999 999987754
No 222
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.59 E-value=0.45 Score=45.02 Aligned_cols=55 Identities=18% Similarity=0.433 Sum_probs=44.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcC
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~ 101 (279)
...++|+ +|..+...+|.++|+.||.| .|.++.+ ..|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 4566676 99999999999999999954 4445443 379999999999999999884
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=90.09 E-value=0.62 Score=31.85 Aligned_cols=68 Identities=15% Similarity=0.282 Sum_probs=44.4
Q ss_pred eEEEc-CCCCCCcHHHHHHHhccCC-----CEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcEECCeEEEEEE
Q 023648 41 SVYVG-GLPYSANEDSVRKVFDKYG-----SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (279)
Q Consensus 41 ~l~V~-nLp~~~te~~L~~~F~~~G-----~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~~i~gr~i~V~~ 114 (279)
+|||. +--..+...+|..++..-+ .|-.|.|..+ |.||+-.. ..|..++..|++..+.|+.|.|+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~-------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~ 73 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN-------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNK 73 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS-------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC-------cEEEEECH-HHHHHHHHHhccccCcCceEEEEE
Confidence 56663 2234567778887776544 3566777543 88998885 568889999999999999999987
Q ss_pred ee
Q 023648 115 VA 116 (279)
Q Consensus 115 a~ 116 (279)
+.
T Consensus 74 ~~ 75 (76)
T 2g0c_A 74 AN 75 (76)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 224
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=58.83 E-value=22 Score=25.06 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=26.8
Q ss_pred EEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCc
Q 023648 66 VVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGR 103 (279)
Q Consensus 66 I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~ 103 (279)
|..+.++.. .+||.||++...++...+|..+.|.
T Consensus 40 i~~v~vP~~----fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASES----LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECTT----STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEecc----cCCEEEEEEecchhHHHHHHCCCCc
Confidence 666665532 7899999999999988898877764
No 225
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=55.28 E-value=22 Score=28.37 Aligned_cols=56 Identities=9% Similarity=0.103 Sum_probs=35.2
Q ss_pred eEEEcCCCC-C--------CcHHHHHHHh--ccCCCEEEEEEeeCCCCCCceEEEEEEcC-hHHHHHHHH
Q 023648 41 SVYVGGLPY-S--------ANEDSVRKVF--DKYGSVVAVKIVNDRSTRGKCYGFVTFGN-PRSAVDAIN 98 (279)
Q Consensus 41 ~l~V~nLp~-~--------~te~~L~~~F--~~~G~I~~v~i~~d~~~~~~g~afV~f~~-~~~A~~Al~ 98 (279)
+++|-|+|. . .....|.+.| ..|.++.- ..+.+..+ ..|+|.|+|.. -.-...|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv-~~l~~~~G-h~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRV-RPLWNYLG-HSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEE-EEEECSSB-EEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCcee-EecccCCC-CceeEEEEecCChHHHHHHHH
Confidence 455556665 1 3447889877 99998774 44444444 67899999975 333344443
No 226
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=53.93 E-value=56 Score=23.17 Aligned_cols=57 Identities=12% Similarity=0.163 Sum_probs=43.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhc
Q 023648 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM 100 (279)
Q Consensus 37 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l 100 (279)
...+.|-|-|+|..+-..++.-.....|---.|..+ -|-|.|.|.+.++..-||++|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHHHHHH
Confidence 345677888999998777776666666765566664 357999999999999999877
No 227
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=50.22 E-value=2.8 Score=32.80 Aligned_cols=28 Identities=11% Similarity=0.256 Sum_probs=18.1
Q ss_pred HHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEc
Q 023648 54 DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFG 88 (279)
Q Consensus 54 ~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~ 88 (279)
++|.++|...|.|+.+.. .+||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~-------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV-------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET-------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC-------CCCeeEEeeC
Confidence 456677787887776544 5789999875
No 228
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=47.18 E-value=51 Score=21.10 Aligned_cols=55 Identities=11% Similarity=0.078 Sum_probs=41.7
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhc
Q 023648 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM 100 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l 100 (279)
.+|.|.++.-..-...|+..+.. ..|..+.+-. ..+-+.|.|.+.+....||+.+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~-----~~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDL-----NEAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECS-----SEEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEc-----cCCEEEEEECCHHHHHHHHHHc
Confidence 47889999888788889999998 7788777744 3457788887666667777753
No 229
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=44.19 E-value=14 Score=35.91 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=40.4
Q ss_pred CCCCCCcHHHHHHHh----ccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhc
Q 023648 46 GLPYSANEDSVRKVF----DKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM 100 (279)
Q Consensus 46 nLp~~~te~~L~~~F----~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l 100 (279)
.++.+.+--+|..+| ..+|-|+.+.|..-+......+++|.|.+.++|..|+..+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 344445555788887 3688999888866544445668899999999999988765
No 230
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=36.75 E-value=26 Score=25.57 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=27.1
Q ss_pred CEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCc
Q 023648 65 SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGR 103 (279)
Q Consensus 65 ~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~g~ 103 (279)
.|..+..... .+||.|||=....++..||+.+.+.
T Consensus 40 ~I~Si~~~~~----lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPEH----VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECTT----CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecCC----CceEEEEEeCCHHHHHHHHhcccce
Confidence 3666655443 6899999999999999999877544
No 231
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=33.56 E-value=21 Score=30.64 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=25.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEe
Q 023648 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIV 72 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~ 72 (279)
..+.|+|||+.++...|..++.....+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 457899999999999999999865555554443
No 232
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=33.30 E-value=28 Score=31.06 Aligned_cols=22 Identities=9% Similarity=0.040 Sum_probs=18.8
Q ss_pred eEEEcCCCCCCcHHHHHHHhcc
Q 023648 41 SVYVGGLPYSANEDSVRKVFDK 62 (279)
Q Consensus 41 ~l~V~nLp~~~te~~L~~~F~~ 62 (279)
.++|+|||++++..-|..+|..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 5789999999999888888763
No 233
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=32.82 E-value=34 Score=29.10 Aligned_cols=32 Identities=22% Similarity=0.449 Sum_probs=25.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEE
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKI 71 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i 71 (279)
...+.|+|||+.++...|..++.. ..+..+.+
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 356789999999999999999987 66654433
No 234
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=32.15 E-value=91 Score=19.24 Aligned_cols=55 Identities=15% Similarity=0.253 Sum_probs=38.6
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEcC---hHHHHHHHHh
Q 023648 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGN---PRSAVDAIND 99 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~~---~~~A~~Al~~ 99 (279)
.+|.|.++.-..-...|+..+.....|..+.+-.. .+-+.|.|.. .+....+|..
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA-----LEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec-----CCEEEEEECCCCCHHHHHHHHHH
Confidence 36778888877777889999999877887777542 3467788843 3445555554
No 235
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=30.79 E-value=38 Score=31.66 Aligned_cols=42 Identities=14% Similarity=0.078 Sum_probs=29.2
Q ss_pred HHHHh--ccCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHH
Q 023648 56 VRKVF--DKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAI 97 (279)
Q Consensus 56 L~~~F--~~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al 97 (279)
|..+| +.+|-|+.+.+...+.......+++.|.+.++|..|+
T Consensus 218 l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 218 LDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHH
T ss_pred hhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHH
Confidence 45556 3689999888765544434456789999988876644
No 236
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=26.78 E-value=38 Score=27.71 Aligned_cols=27 Identities=7% Similarity=-0.118 Sum_probs=24.0
Q ss_pred CceEEEEEEcChHHHHHHHHhcCCcEE
Q 023648 79 GKCYGFVTFGNPRSAVDAINDMNGRTI 105 (279)
Q Consensus 79 ~~g~afV~f~~~~~A~~Al~~l~g~~i 105 (279)
.+||.|||=.....+..||+.+.+...
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~vy~ 174 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDIYI 174 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTEEE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhhhc
Confidence 789999999999999999998887643
No 237
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=25.70 E-value=52 Score=27.55 Aligned_cols=29 Identities=17% Similarity=0.339 Sum_probs=22.1
Q ss_pred eEEEcCCCCCCcHHHHHHHhccCCCEEEE
Q 023648 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAV 69 (279)
Q Consensus 41 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v 69 (279)
.+.|+|||+.++...|..++.....+..+
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~~~~~~~ 120 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYTDAIADM 120 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTGGGEEEE
T ss_pred eEEEECCCCCccHHHHHHHHhcCCCcceE
Confidence 68899999999999888888754344433
No 238
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=25.61 E-value=1.3e+02 Score=18.85 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=40.8
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceEEEEEEc----ChHHHHHHHHhc
Q 023648 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFG----NPRSAVDAINDM 100 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~afV~f~----~~~~A~~Al~~l 100 (279)
.+|.|.++.-..-...|+..+.+...|..+.+-. ..+-+.|.|. +.+....||+.+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~-----~~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVAL-----LQNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEG-----GGTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEe-----cCCEEEEEECCCCCCHHHHHHHHHHC
Confidence 3677888887767788999999887788777754 3457888885 455666777653
No 239
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=24.76 E-value=24 Score=29.79 Aligned_cols=32 Identities=19% Similarity=0.380 Sum_probs=24.7
Q ss_pred eEEEcCCCCCCcHHHHHHHhccCCCEEEEEEe
Q 023648 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIV 72 (279)
Q Consensus 41 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~ 72 (279)
-..|+|||+.++...|..++.....+..+.++
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 34799999999999999999876666554443
No 240
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=23.69 E-value=83 Score=29.06 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=33.4
Q ss_pred HHHHHHhc----cCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhc
Q 023648 54 DSVRKVFD----KYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM 100 (279)
Q Consensus 54 ~~L~~~F~----~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l 100 (279)
-+|..+|- .+|-|+.+.+...+.......+++.|.+.++|..|+..+
T Consensus 201 ~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 201 YDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp CCCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHH
T ss_pred cCHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHH
Confidence 35555553 567888887765544444567889999999998888765
No 241
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=22.83 E-value=1.3e+02 Score=22.38 Aligned_cols=33 Identities=9% Similarity=0.076 Sum_probs=19.3
Q ss_pred CCCEEEEEEeeCCCCCCceEEEEE-EcChHHHHHHHH
Q 023648 63 YGSVVAVKIVNDRSTRGKCYGFVT-FGNPRSAVDAIN 98 (279)
Q Consensus 63 ~G~I~~v~i~~d~~~~~~g~afV~-f~~~~~A~~Al~ 98 (279)
+=.|+.|.|-.|. .-+.+||. |-+.++.+.+++
T Consensus 43 ~vtVt~V~vS~Dl---~~AkVyvs~~~~~~~~~~~~~ 76 (129)
T 2e7g_A 43 NVELSKVSLTPDF---SACRAYWKTTLSAEQNAHMEA 76 (129)
T ss_dssp TCCEEEEEECTTS---CCEEEEECCCSCHHHHHHHHH
T ss_pred eeEEEEEEECCCC---cEEEEEEEecCChhhHHHHHH
Confidence 4478899997664 34456666 545444333333
No 242
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=21.80 E-value=50 Score=31.47 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=33.4
Q ss_pred HHHHHHhc----cCCCEEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcC
Q 023648 54 DSVRKVFD----KYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101 (279)
Q Consensus 54 ~~L~~~F~----~~G~I~~v~i~~d~~~~~~g~afV~f~~~~~A~~Al~~l~ 101 (279)
-+|..+|- .+|-|+.+.|...+.......+++.|.+.++|..|+..+.
T Consensus 288 ~dl~~~~~GseGtlGIIT~~tlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 339 (584)
T 2uuu_A 288 INYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIR 339 (584)
T ss_dssp CCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cchhhhhccCCCCcEEEEEEEEEEEecccceEEEEEEcCCHHHHHHHHHHHH
Confidence 35555553 5678888887655443345578899999999988887653
No 243
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=21.03 E-value=44 Score=27.85 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=21.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHhccCCCE
Q 023648 40 SSVYVGGLPYSANEDSVRKVFDKYGSV 66 (279)
Q Consensus 40 ~~l~V~nLp~~~te~~L~~~F~~~G~I 66 (279)
..+.|+|||+.++...|..++.....+
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~ 122 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCV 122 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGC
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCC
Confidence 347899999999999998888754333
No 244
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=26.14 E-value=21 Score=26.06 Aligned_cols=62 Identities=10% Similarity=0.093 Sum_probs=34.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhccCCCEEEEEEeeCCCCCCceE--EEEEEcChHHHHHHHHhcCCcE
Q 023648 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCY--GFVTFGNPRSAVDAINDMNGRT 104 (279)
Q Consensus 39 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~~~~g~--afV~f~~~~~A~~Al~~l~g~~ 104 (279)
..||-|..+ ..++.|..+..+.+ +..+.+.........-| .|=.|.+.++|.+|+..|....
T Consensus 25 ~YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 25 HYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 345555443 34556666666665 33444433211101112 2347899999999999886543
No 245
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=20.33 E-value=2.1e+02 Score=21.84 Aligned_cols=44 Identities=9% Similarity=0.237 Sum_probs=29.7
Q ss_pred HHHHhccCCCEEEEEEeeC--CCC--------------CCceEEEEEEcChHHHHHHHHh
Q 023648 56 VRKVFDKYGSVVAVKIVND--RST--------------RGKCYGFVTFGNPRSAVDAIND 99 (279)
Q Consensus 56 L~~~F~~~G~I~~v~i~~d--~~~--------------~~~g~afV~f~~~~~A~~Al~~ 99 (279)
.-.+|..||.+.-+...-+ +.+ ...-|.+|+|.+.+...+|..+
T Consensus 50 a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~k 109 (141)
T 2okq_A 50 AAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQK 109 (141)
T ss_dssp HHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHH
Confidence 4578999998876554322 111 1234899999999988887743
No 246
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=20.31 E-value=22 Score=26.65 Aligned_cols=28 Identities=14% Similarity=0.027 Sum_probs=0.0
Q ss_pred eEEEEEEcChHHHHHHHHhcCCcEECCe
Q 023648 81 CYGFVTFGNPRSAVDAINDMNGRTIDGR 108 (279)
Q Consensus 81 g~afV~f~~~~~A~~Al~~l~g~~i~gr 108 (279)
-++|++|+++..+..|+..|+|....|.
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~ 32 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGR 32 (135)
T ss_dssp ----------------------------
T ss_pred ccccccccCCCchhhhhhhccCCCCCCC
Confidence 3788899999999999998887665543
Done!