BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023649
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DOL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Fatty-Acid
Binding Protein At1g53520 (Atfap3)
Length = 217
Score = 257 bits (657), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 133/210 (63%), Positives = 158/210 (75%), Gaps = 1/210 (0%)
Query: 70 VGSAE-YTEEPATKVKFQKXXXXXXXXXXXXXXXTGYREKVFAIIGVKVYAAGLYINQSI 128
VG+AE Y EE AT VKF++ TG+REK FAIIGVKVYAAG Y+N+SI
Sbjct: 7 VGNAEDYAEETATSVKFKRSVTLPGCSSPLSLLGTGFREKKFAIIGVKVYAAGYYVNESI 66
Query: 129 LSKLNAWKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDDAISPRIR 188
LS L+AW G+ A IQ DSSLF +I+QA +EKSL+IVLVRDVDGKTFWDALD+AISPRI+
Sbjct: 67 LSGLSAWTGRSADEIQRDSSLFVSIFQAQAEKSLQIVLVRDVDGKTFWDALDEAISPRIK 126
Query: 189 IPTPVDESALSTFRSIFQGRNLMKGTFIFLTWLDPSKMLVSISGDGLPSGVDATIESENV 248
P+ D +ALSTF IFQ R L KG+ I LTW++ S MLVS+S GLP+ VDATIES NV
Sbjct: 127 SPSSEDTTALSTFCCIFQNRPLNKGSVILLTWINTSNMLVSVSSGGLPTNVDATIESGNV 186
Query: 249 TFALYDVFFGGAPVSPSLKASVATGLATIL 278
T AL+DVFFG +PVSP+LK+SVA LA L
Sbjct: 187 TSALFDVFFGDSPVSPTLKSSVANQLAMTL 216
>pdb|1JX0|A Chain A, Chalcone Isomerase--y106f Mutant
pdb|1JX0|B Chain B, Chalcone Isomerase--y106f Mutant
Length = 222
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 7/182 (3%)
Query: 104 GYREKVFAIIG--VKVYAAGLYINQSILSKLNA-WKGKGAANIQEDSSLFDTIYQAPSEK 160
G E+ I G +K A G+Y+ ++ L A WKGK + + E + I P EK
Sbjct: 32 GAGERGLTIEGNFIKFTAIGVYLEDIAVASLAAKWKGKSSEELLETLDFYRDIISGPFEK 91
Query: 161 SLKIVLVRDVDGKTF-WDALDDAISPRIRIPTPVD--ESALSTFRSIFQGRNLMKGTFIF 217
++ +R++ G F +++ ++ + T D A+ F F+ N G +F
Sbjct: 92 LIRGSKIRELSGPEFSRKVMENCVAHLKSVGTYGDAEAEAMQKFAEAFKPVNFPPGASVF 151
Query: 218 LTWLDPSKMLVSISGD-GLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLAT 276
+ +S S D +P A IE++ V+ A+ + G VSP LK +A L
Sbjct: 152 YRQSPDGILGLSFSPDTSIPEKEAALIENKAVSSAVLETMIGEHAVSPDLKRCLAARLPA 211
Query: 277 IL 278
+L
Sbjct: 212 LL 213
>pdb|1EYP|A Chain A, Chalcone Isomerase
pdb|1EYP|B Chain B, Chalcone Isomerase
pdb|1EYQ|A Chain A, Chalcone Isomerase And Naringenin
pdb|1EYQ|B Chain B, Chalcone Isomerase And Naringenin
pdb|1JEP|A Chain A, Chalcone Isomerase Complexed With 4'-Hydroxyflavanone
pdb|1JEP|B Chain B, Chalcone Isomerase Complexed With 4'-Hydroxyflavanone
pdb|1FM8|A Chain A, Chalcone Isomerase Complexed With 5,4'-Dideoxyflavanone
pdb|1FM8|B Chain B, Chalcone Isomerase Complexed With 5,4'-Dideoxyflavanone
pdb|1FM7|A Chain A, Chalcone Isomerase Complexed With 5-Deoxyflavanone
pdb|1FM7|B Chain B, Chalcone Isomerase Complexed With 5-Deoxyflavanone
Length = 222
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 7/182 (3%)
Query: 104 GYREKVFAIIG--VKVYAAGLYINQSILSKLNA-WKGKGAANIQEDSSLFDTIYQAPSEK 160
G E+ I G +K A G+Y+ ++ L A WKGK + + E + I P EK
Sbjct: 32 GAGERGLTIEGNFIKFTAIGVYLEDIAVASLAAKWKGKSSEELLETLDFYRDIISGPFEK 91
Query: 161 SLKIVLVRDVDGKTF-WDALDDAISPRIRIPTPVD--ESALSTFRSIFQGRNLMKGTFIF 217
++ +R++ G + +++ ++ + T D A+ F F+ N G +F
Sbjct: 92 LIRGSKIRELSGPEYSRKVMENCVAHLKSVGTYGDAEAEAMQKFAEAFKPVNFPPGASVF 151
Query: 218 LTWLDPSKMLVSISGD-GLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLAT 276
+ +S S D +P A IE++ V+ A+ + G VSP LK +A L
Sbjct: 152 YRQSPDGILGLSFSPDTSIPEKEAALIENKAVSSAVLETMIGEHAVSPDLKRCLAARLPA 211
Query: 277 IL 278
+L
Sbjct: 212 LL 213
>pdb|1JX1|A Chain A, Chalcone Isomerase--T48a Mutant
pdb|1JX1|B Chain B, Chalcone Isomerase--T48a Mutant
pdb|1JX1|C Chain C, Chalcone Isomerase--T48a Mutant
pdb|1JX1|D Chain D, Chalcone Isomerase--T48a Mutant
pdb|1JX1|E Chain E, Chalcone Isomerase--T48a Mutant
pdb|1JX1|F Chain F, Chalcone Isomerase--T48a Mutant
Length = 222
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 7/182 (3%)
Query: 104 GYREKVFAIIG--VKVYAAGLYINQSILSKLNA-WKGKGAANIQEDSSLFDTIYQAPSEK 160
G E+ I G +K A G+Y+ ++ L A WKGK + + E + I P EK
Sbjct: 32 GAGERGLTIEGNFIKFAAIGVYLEDIAVASLAAKWKGKSSEELLETLDFYRDIISGPFEK 91
Query: 161 SLKIVLVRDVDGKTF-WDALDDAISPRIRIPTPVD--ESALSTFRSIFQGRNLMKGTFIF 217
++ +R++ G + +++ ++ + T D A+ F F+ N G +F
Sbjct: 92 LIRGSKIRELSGPEYSRKVMENCVAHLKSVGTYGDAEAEAMQKFAEAFKPVNFPPGASVF 151
Query: 218 LTWLDPSKMLVSISGD-GLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLAT 276
+ +S S D +P A IE++ V+ A+ + G VSP LK +A L
Sbjct: 152 YRQSPDGILGLSFSPDTSIPEKEAALIENKAVSSAVLETMIGEHAVSPDLKRCLAARLPA 211
Query: 277 IL 278
+L
Sbjct: 212 LL 213
>pdb|4DOK|A Chain A, Crystal Structure Of Arabidopsis Thaliana
Chalcone-Isomerase Like Protein At5g05270 (Atchil)
pdb|4DOK|B Chain B, Crystal Structure Of Arabidopsis Thaliana
Chalcone-Isomerase Like Protein At5g05270 (Atchil)
Length = 208
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 115 VKVYAAGLYINQS-ILSKLNAWKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGK 173
VK A G+Y++ S + + L+ WKGK + D FD + A EK +++V+++++ G
Sbjct: 39 VKFTAIGVYLDPSDVKTHLDNWKGKTGKELAGDDDFFDALASAEMEKVIRVVVIKEIKGA 98
Query: 174 TFWDALDDAISPRI 187
+ L++ + R+
Sbjct: 99 QYGVQLENTVRDRL 112
>pdb|4DOI|A Chain A, Crystal Structure Of Arabidopsis Thaliana Chalcone
Isomerase At3g55120 (Atchi)
pdb|4DOI|B Chain B, Crystal Structure Of Arabidopsis Thaliana Chalcone
Isomerase At3g55120 (Atchi)
Length = 246
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 12/175 (6%)
Query: 109 VFAIIGVKVYAAGLYINQSILSKLNA-WKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLV 167
+F +IGV Y+ + + L+ WKGK + E F I EK +K+ +
Sbjct: 57 IFTVIGV-------YLEGNAVPSLSVKWKGKTTEELTESIPFFREIVTGAFEKFIKVTMK 109
Query: 168 RDVDGKTFWDALDD---AISPRIRIPTPVDESALSTFRSIFQGRNLMKGTFIFLTWLDPS 224
+ G+ + + + + AI ++ + T + A+ F IF+ G+ I
Sbjct: 110 LPLTGQQYSEKVTENCVAIWKQLGLYTDCEAKAVEKFLEIFKEETFPPGSSILFALSPTG 169
Query: 225 KMLVSIS-GDGLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATIL 278
+ V+ S D +P A IE++ + A+ + G VSP + SVA L+ ++
Sbjct: 170 SLTVAFSKDDSIPETGIAVIENKLLAEAVLESIIGKNGVSPGTRLSVAERLSQLM 224
>pdb|2QEA|A Chain A, Crystal Structure Of A Putative General Stress Protein 26
(Jann_0955) From Jannaschia Sp. Ccs1 At 2.46 A
Resolution
pdb|2QEA|B Chain B, Crystal Structure Of A Putative General Stress Protein 26
(Jann_0955) From Jannaschia Sp. Ccs1 At 2.46 A
Resolution
pdb|2QEA|C Chain C, Crystal Structure Of A Putative General Stress Protein 26
(Jann_0955) From Jannaschia Sp. Ccs1 At 2.46 A
Resolution
Length = 160
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 23/125 (18%)
Query: 175 FWDALDDAISPRIRI----------PTPVDESALSTFRSIFQGRNLMKGTFIFLTWLDPS 224
FWD L+D S + I P D++ + + +G +L KG P+
Sbjct: 9 FWDRLEDVRSGXLGIKGQGRLIPXSPQTDDDAPGAIWFITAKGTDLAKGVAAGPQ---PA 65
Query: 225 KMLVSISGDGLPSGVDATIESENVTFAL-------YDVFFGGAPVSPS---LKASVATGL 274
+ +VS G+GL + +D T+E AL D +F G P LK + A+G
Sbjct: 66 QFVVSDDGEGLYADLDGTLERSTDREALDEFWSFVADAWFDGGQHDPDVCLLKFTPASGE 125
Query: 275 ATILK 279
+I +
Sbjct: 126 ISITE 130
>pdb|1ADQ|A Chain A, Crystal Structure Of A Human Igm Rheumatoid Factor Fab In
Complex With Its Autoantigen Igg Fc
Length = 206
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 214 TFIFLTWLDPSKMLVSISGDGLPSGVDATI 243
T + WLD + +S GLPS ++ TI
Sbjct: 70 TVLHQNWLDGKEYKCKVSNKGLPSSIEKTI 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,194,398
Number of Sequences: 62578
Number of extensions: 261219
Number of successful extensions: 688
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 681
Number of HSP's gapped (non-prelim): 10
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)