Query 023649
Match_columns 279
No_of_seqs 155 out of 595
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 10:27:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023649.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023649hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dol_A AT1G53520, 94270-95700, 100.0 1.5E-52 5.1E-57 372.0 22.0 210 69-278 6-216 (217)
2 4doi_A Chalcone--flavonone iso 100.0 5.3E-48 1.8E-52 347.6 17.3 214 64-279 7-225 (246)
3 1eyq_A Chalcone-flavonone isom 100.0 3.2E-47 1.1E-51 339.0 18.8 205 73-279 5-214 (222)
4 4doo_A Chalcone-flavanone isom 100.0 1.1E-45 3.7E-50 325.5 18.3 196 73-278 2-203 (205)
5 4dok_A Similarity to chalcone- 100.0 2.8E-45 9.5E-50 323.4 17.8 199 74-278 3-207 (208)
6 3uep_A YSCQ-C, type III secret 30.5 51 0.0017 24.5 3.9 25 210-236 40-64 (96)
7 1o6a_A Putative flagellar moto 26.0 65 0.0022 23.8 3.8 25 210-236 40-64 (96)
8 1o9y_A HRCQ2; secretory protei 25.5 39 0.0013 24.4 2.3 25 210-236 36-60 (84)
9 1yel_A AT1G16640; CESG, protei 21.6 90 0.0031 23.0 3.8 23 209-231 77-99 (104)
10 1wid_A DNA-binding protein RAV 17.2 68 0.0023 24.9 2.3 24 208-231 90-115 (130)
No 1
>4dol_A AT1G53520, 94270-95700, chalcon; chalcone-isomerase like fold, fatty-acid binding, isomerase; HET: PLM; 1.70A {Arabidopsis thaliana}
Probab=100.00 E-value=1.5e-52 Score=372.03 Aligned_cols=210 Identities=70% Similarity=1.064 Sum_probs=195.7
Q ss_pred CCCCCc-ceeecccCccccccccCCCCCCcceEEeeEEEeeEEEEeeEEEEEEEEEecCcchhhhhhhhCCCccccccCh
Q 023649 69 SVGSAE-YTEEPATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKLNAWKGKGAANIQEDS 147 (279)
Q Consensus 69 ~~~~a~-~v~Ep~tgv~FP~~l~~~~~~~~l~L~G~GvR~k~v~~l~~kVYaagLY~~~~~~~~L~~~~~~~~~el~~~~ 147 (279)
++++++ .++||+|||+||++++.++++++|+|+|+|+|+|+|.|++||||++|||++++..++|++|++++++||.+++
T Consensus 6 ~~~~~~~~v~e~~tgv~fp~~~~~~~~~~~l~L~G~GvR~~~i~~~~ikvYa~glYl~~~~~~~L~~~~~~~~~el~~~~ 85 (217)
T 4dol_A 6 SVGNAEDYAEETATSVKFKRSVTLPGCSSPLSLLGTGFREKKFAIIGVKVYAAGYYVNESILSGLSAWTGRSADEIQRDS 85 (217)
T ss_dssp -----CCEEECTTTCCEEESEECCTTCSSCEEEEEEEEEEEESSSSEEEEEEEEEEECGGGTGGGGGGTTCCHHHHHTCH
T ss_pred ccCCccceeecCCCCccCCCcccCCCCCCceEEEEEEEEEEEEeeeEEEEEEEEEEcCHHHHHHHHhhcCCCHHHHcccH
Confidence 567766 9999999999999999998778999999999999988999999999999999988899999999999999999
Q ss_pred hHHHHHhcCCCeeEEEEEEEecCChhHHHHHHHHHhchhcCCCCcccHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCeEE
Q 023649 148 SLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDDAISPRIRIPTPVDESALSTFRSIFQGRNLMKGTFIFLTWLDPSKML 227 (279)
Q Consensus 148 ~~~~~ll~~~~~k~Lri~~~R~v~~~~~~da~~e~l~~~l~~~~~~~~~~L~~f~~~f~~~~l~kGd~i~l~~~p~~gl~ 227 (279)
+|+++|++++++|+|||+|+|++++++|+++++|+|++|++..+.+++++|++|.++|++++++|||+|+|+|.|+++++
T Consensus 86 ~~~~~il~~~~~k~lri~~~R~i~~~~l~~a~~e~i~~~~~~~~~~~~~~l~~f~~~F~d~~v~kGd~i~~~~~p~~~l~ 165 (217)
T 4dol_A 86 SLFVSIFQAQAEKSLQIVLVRDVDGKTFWDALDEAISPRIKSPSSEDTTALSTFCCIFQNRPLNKGSVILLTWINTSNML 165 (217)
T ss_dssp HHHHHHHHSSSCEEEEEEESSCBCHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHHHHTTCCBCTTCEEEEEEEETTEEE
T ss_pred HHHHHHHcCCCceEEEEEEEecCCHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCcCCCCCEEEEEEcCCCCEE
Confidence 99999999999999999999999999999999999999998876567899999999999889999999999999999999
Q ss_pred EEEeCCCCCcccceeeCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhh
Q 023649 228 VSISGDGLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATIL 278 (279)
Q Consensus 228 v~~n~~G~p~~~~g~I~s~~f~~Alf~iwLG~~pvsp~lK~~l~~~l~~ll 278 (279)
+++|+||+|.+.+|+|+++.|++|||+||||++|+||+||++|+++|++||
T Consensus 166 i~~~~~g~~~~~~g~I~~~~f~~A~~~iwLG~~p~sp~lk~~L~~~l~~l~ 216 (217)
T 4dol_A 166 VSVSSGGLPTNVDATIESGNVTSALFDVFFGDSPVSPTLKSSVANQLAMTL 216 (217)
T ss_dssp EEEESSSCCCSCCEEEECHHHHHHHHHHHHSSSCSCHHHHHHHHHHHHHHC
T ss_pred EEEeCCCccccceeEeCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhh
Confidence 999866766567899999999999999999999999999999999999997
No 2
>4doi_A Chalcone--flavonone isomerase 1; chalcone-flavanone isomerase; 1.55A {Arabidopsis thaliana}
Probab=100.00 E-value=5.3e-48 Score=347.61 Aligned_cols=214 Identities=23% Similarity=0.335 Sum_probs=190.4
Q ss_pred ccccCCCCCCcceeecccCccccccccCCCCCCcceEEeeEEEeeEEEEeeEEEEEEEEEecCcchhhhh-hhhCCCccc
Q 023649 64 ASSSSSVGSAEYTEEPATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKLN-AWKGKGAAN 142 (279)
Q Consensus 64 ~~~~~~~~~a~~v~Ep~tgv~FP~~l~~~~~~~~l~L~G~GvR~k~v~~l~~kVYaagLY~~~~~~~~L~-~~~~~~~~e 142 (279)
+||.+...++..+. ++||+||++++.|+++++|+|+|+|+|.|.|.+++||||++|||++++..++|. +|+|++++|
T Consensus 7 ~~~~~~~~~~~~v~--V~gV~FP~~v~~p~~~~~L~L~GaGvR~k~I~~~~vKvYAiGlYl~~~~~~~L~~kwkgk~~~e 84 (246)
T 4doi_A 7 CASPSPFPAVTKLH--VDSVTFVPSVKSPASSNPLFLGGAGVRGLDIQGKFVIFTVIGVYLEGNAVPSLSVKWKGKTTEE 84 (246)
T ss_dssp --------CCCCEE--ETTEEECSEEECTTTCCEEEEEEEEEEEEEETTEEEEEEEEEEEECTTHHHHHHHHHTTCCHHH
T ss_pred cccCCCCCccceeE--ECceECCCeeccCCCCCceeEecceeeceeeeeeEEEEEEEEEEechhHHHHhhhhhcCCCHHH
Confidence 34434444566777 999999999999877789999999999999888899999999999999888897 999999999
Q ss_pred cccChhHHHHHhcCCCeeEEEEEEEecCChhHHHHHHHHHhchhcCCCC---cccHHHHHHHHHhcCCCCCCCCCEEEEE
Q 023649 143 IQEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDDAISPRIRIPT---PVDESALSTFRSIFQGRNLMKGTFIFLT 219 (279)
Q Consensus 143 l~~~~~~~~~ll~~~~~k~Lri~~~R~v~~~~~~da~~e~l~~~l~~~~---~~~~~~L~~f~~~f~~~~l~kGd~i~l~ 219 (279)
|.++.+||++|++++++|+|||+++|++++++++++++|++++||+..+ .+++++|++|.++|+++.+++|+.|+|+
T Consensus 85 L~~~~~ff~~il~~p~eK~lrl~~ir~l~g~~~~~al~e~l~~rlk~~g~~~~~e~~aL~~F~~~F~~~~l~kGs~I~~~ 164 (246)
T 4doi_A 85 LTESIPFFREIVTGAFEKFIKVTMKLPLTGQQYSEKVTENCVAIWKQLGLYTDCEAKAVEKFLEIFKEETFPPGSSILFA 164 (246)
T ss_dssp HHHCHHHHHHHHHCSSCEEEEEEESSCEEHHHHHHHHTTTHHHHHHHHTCCCHHHHHHHHHHHHHHTTCEECTTCEEEEE
T ss_pred hcccHHHHHHHHcCCcceEEEEEEEecCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhccCcCCCCCEEEEE
Confidence 9999999999999999999999999999999999999999999986643 2578899999999999889999999999
Q ss_pred EeCCCeEEEEEeCCCC-CcccceeeCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhC
Q 023649 220 WLDPSKMLVSISGDGL-PSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATILK 279 (279)
Q Consensus 220 ~~p~~gl~v~~n~~G~-p~~~~g~I~s~~f~~Alf~iwLG~~pvsp~lK~~l~~~l~~ll~ 279 (279)
|.|+++++|.+..||+ |....++|+++.||+|+|++|||++|+||++|+++++++++||+
T Consensus 165 ~~p~g~l~i~~s~~G~~p~~~~~~I~s~~l~~All~~ylG~~pVsp~lK~sla~~la~ll~ 225 (246)
T 4doi_A 165 LSPTGSLTVAFSKDDSIPETGIAVIENKLLAEAVLESIIGKNGVSPGTRLSVAERLSQLMM 225 (246)
T ss_dssp ECTTSEEEEEEESSSCCCSSCSEEEECHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHHT
T ss_pred EeCCCcEEEEEecCCccccccccccCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999965574 43457899999999999999999999999999999999999985
No 3
>1eyq_A Chalcone-flavonone isomerase 1; chalcone isomerase, flavonoid; HET: NAR; 1.85A {Medicago sativa} SCOP: d.36.1.1 PDB: 1eyp_A* 1fm7_A* 1fm8_A* 1jep_A* 1jx0_A* 1jx1_A*
Probab=100.00 E-value=3.2e-47 Score=339.02 Aligned_cols=205 Identities=22% Similarity=0.343 Sum_probs=188.5
Q ss_pred CcceeecccCccccccccCCCCCCcceEEeeEEEeeEEEEeeEEEEEEEEEecCcchhhhh-hhhCCCccccccChhHHH
Q 023649 73 AEYTEEPATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKLN-AWKGKGAANIQEDSSLFD 151 (279)
Q Consensus 73 a~~v~Ep~tgv~FP~~l~~~~~~~~l~L~G~GvR~k~v~~l~~kVYaagLY~~~~~~~~L~-~~~~~~~~el~~~~~~~~ 151 (279)
...++ +|||+||++++.|+++++|+|+|+|+|.|+|.+++||||++|||+++...++|. +|+|++++||.+|.+||+
T Consensus 5 ~~~v~--v~gv~FP~~~~~p~~~~~L~L~GaGvR~k~i~~~~iKvYa~GlYl~~~~~~~L~~k~kg~~a~el~~~~~f~~ 82 (222)
T 1eyq_A 5 ITAIT--VENLEYPAVVTSPVTGKSYFLGGAGERGLTIEGNFIKFTAIGVYLEDIAVASLAAKWKGKSSEELLETLDFYR 82 (222)
T ss_dssp CCCEE--ETTEEECSEEECTTTCCEEEEEEEEEEEEEETTEEEEEEEEEEEEETTHHHHHHHHHTTCCHHHHHTCHHHHH
T ss_pred cccEE--EcceECCCccccCCCCCceEEeeeEEEEEEeeceEEEEEEEEEEeCHHHhhHhhhhhcCCCHHHhcccHHHHH
Confidence 44566 899999999999877789999999999999888999999999999999888896 899999999999999999
Q ss_pred HHhcCCCeeEEEEEEEecCChhHHHHHHHHHhchhcCCCC---cccHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCeEEE
Q 023649 152 TIYQAPSEKSLKIVLVRDVDGKTFWDALDDAISPRIRIPT---PVDESALSTFRSIFQGRNLMKGTFIFLTWLDPSKMLV 228 (279)
Q Consensus 152 ~ll~~~~~k~Lri~~~R~v~~~~~~da~~e~l~~~l~~~~---~~~~~~L~~f~~~f~~~~l~kGd~i~l~~~p~~gl~v 228 (279)
+|++++++|++||+++|++++++|+++++|++++|++..+ .+++++|++|.++|+++.++|||+|+|+|.|++++.+
T Consensus 83 ~li~~~~~k~irl~~i~~v~g~~~~~a~~e~~~~~~~~~g~~~~~e~~~L~~f~~~F~~~~~~kG~~i~~~~~p~g~l~i 162 (222)
T 1eyq_A 83 DIISGPFEKLIRGSKIRELSGPEYSRKVMENCVAHLKSVGTYGDAEAEAMQKFAEAFKPVNFPPGASVFYRQSPDGILGL 162 (222)
T ss_dssp HHHHCSSCEEEEEEESSCEEHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCEECTTCEEEEEEETTTEEEE
T ss_pred HHHcCCCceEEEEEEEeCCCHHHHHHHHHHHHHHHHhccCccccchHHHHHHHHHHhCCCCCCCCCEEEEEEcCCCceEE
Confidence 9999999999999999999999999999999999997543 2567899999999998779999999999999999988
Q ss_pred EEeCCCC-CcccceeeCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhC
Q 023649 229 SISGDGL-PSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATILK 279 (279)
Q Consensus 229 ~~n~~G~-p~~~~g~I~s~~f~~Alf~iwLG~~pvsp~lK~~l~~~l~~ll~ 279 (279)
.+..||+ |.+..|+|+++.|++|+|++|||++|+||++|+++++++++||+
T Consensus 163 s~~~~g~~p~~~~~~I~~~~~~~Al~~i~lG~~pvsp~lK~sl~~~l~~ll~ 214 (222)
T 1eyq_A 163 SFSPDTSIPEKEAALIENKAVSSAVLETMIGEHAVSPDLKRCLAARLPALLN 214 (222)
T ss_dssp EEESSSSCCSSCSEEEECHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHH
T ss_pred EEEeCCccccccccccCCHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhh
Confidence 8765675 44468999999999999999999999999999999999999984
No 4
>4doo_A Chalcone-flavanone isomerase family protein; chalcone-isomerase like fold, fatty-acid binding; HET: DAO; 1.90A {Arabidopsis thaliana}
Probab=100.00 E-value=1.1e-45 Score=325.50 Aligned_cols=196 Identities=20% Similarity=0.354 Sum_probs=178.6
Q ss_pred CcceeecccCccccccccCCCCCCcceEEeeEEEeeEEEEe-eEEEEEEEEEecCcchh-hhh-hhhCCCccccccChhH
Q 023649 73 AEYTEEPATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAII-GVKVYAAGLYINQSILS-KLN-AWKGKGAANIQEDSSL 149 (279)
Q Consensus 73 a~~v~Ep~tgv~FP~~l~~~~~~~~l~L~G~GvR~k~v~~l-~~kVYaagLY~~~~~~~-~L~-~~~~~~~~el~~~~~~ 149 (279)
++.++||.|||+||++++. .++|+|+|+|+|.|.++ +||||++|||+++...+ +|+ +|++++++||.++++|
T Consensus 2 ~~~~vep~tgv~FP~~~~~-----~~~L~G~GvR~~~i~~~~~ikvYa~GlYl~~~~~~~~L~~k~~~~~~~el~~~~~~ 76 (205)
T 4doo_A 2 DESVVEPKTGFSFPASIGD-----SRRLLGVGLRKKSLLGLKNIDVYAFGVYADCDDVKKLVGDKYANLPASEIRGNKSF 76 (205)
T ss_dssp -CCEECTTTCCEECSEETT-----TEEEEEEEEEEEECSTTCEEEEEEEEEEEEHHHHHHHHHHHSTTCCHHHHHTCTTH
T ss_pred CCccccCCcCCcCCCccCC-----CceEEEeeeeEEEEeeccceEEEEEEEEeCHHHHHHHHHhhhcCCCHHHHcccHHH
Confidence 5789999999999999984 37999999999876333 79999999999998664 687 8999999999999999
Q ss_pred HHHHhcCCCeeEEEEEEEe-cCChhHHHHHHHHHhchhcCCCCc-ccHHHHHHHHHhcCC-CCCCCCCEEEEEEeCCCeE
Q 023649 150 FDTIYQAPSEKSLKIVLVR-DVDGKTFWDALDDAISPRIRIPTP-VDESALSTFRSIFQG-RNLMKGTFIFLTWLDPSKM 226 (279)
Q Consensus 150 ~~~ll~~~~~k~Lri~~~R-~v~~~~~~da~~e~l~~~l~~~~~-~~~~~L~~f~~~f~~-~~l~kGd~i~l~~~p~~gl 226 (279)
+++|++++++|++||+++| ++++++++++|++++++|+++.+. +++++|++|.++|++ .+++|||+|+|+|.|++++
T Consensus 77 ~~~il~~~~~k~iri~~~~~~i~~~~~~da~~~~i~~~~~~~~~~~~~~~l~~f~~~F~~~~~~~kGd~i~~~~~p~~~l 156 (205)
T 4doo_A 77 MDDLMEADIKMTIRLQIVYGKLNIRSVRNAFQESVGNRLKKFGGSDNDELLQSFTSLFKDEYKIPRNSTIDLTKDPGHVL 156 (205)
T ss_dssp HHHHHHSCCCEEEEEEECCSCCCHHHHHHHHHHHHHHHHHHHSCSCCHHHHHHHHGGGTTCCCCCTTCEEEEEEETTTEE
T ss_pred HHHHHcCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhccCCCCCCCCEEEEEEcCCCcE
Confidence 9999999999999999996 899999999999999999876553 578999999999984 5688999999999999999
Q ss_pred EEEEeCCCCCcccceeeCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhh
Q 023649 227 LVSISGDGLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATIL 278 (279)
Q Consensus 227 ~v~~n~~G~p~~~~g~I~s~~f~~Alf~iwLG~~pvsp~lK~~l~~~l~~ll 278 (279)
.+++| | +.+|+|+++.|++|||+||||++|+||++|++|+++|++|.
T Consensus 157 ~~~~~--g---~~~g~I~~~~f~~al~~iwLG~~pvsp~lk~~l~~~l~~l~ 203 (205)
T 4doo_A 157 SVAIE--G---NHVGSVKSHLLCRSILDLYIGEEPFDKNAREDFLDNAASLA 203 (205)
T ss_dssp EEEET--T---EEEEEEECHHHHHHHHHHHHSSSCSCHHHHHHHHHHHHHHT
T ss_pred EEEEC--C---eeeEEECCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHh
Confidence 99996 7 57999999999999999999999999999999999999984
No 5
>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana}
Probab=100.00 E-value=2.8e-45 Score=323.40 Aligned_cols=199 Identities=24% Similarity=0.443 Sum_probs=181.1
Q ss_pred cceeecccCccccccccCCCCCCcceEEeeEEEeeEEEEeeEEEEEEEEEecCc-chhhhhhhhCCCccccccChhHHHH
Q 023649 74 EYTEEPATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQS-ILSKLNAWKGKGAANIQEDSSLFDT 152 (279)
Q Consensus 74 ~~v~Ep~tgv~FP~~l~~~~~~~~l~L~G~GvR~k~v~~l~~kVYaagLY~~~~-~~~~L~~~~~~~~~el~~~~~~~~~ 152 (279)
+.+. +.||+||++++ . +++|+|+|+|+|.|.|.+++||||++|||++++ ...+|.+|++++++||.+|.+||++
T Consensus 3 ~~~~--v~gv~FP~~~~-~--~~~L~L~GaGvR~~~I~~~~iKvYa~GlYl~~~~~~~~l~kwk~~~~~eL~~~~~f~~~ 77 (208)
T 4dok_A 3 GMVM--VHEVPFPPQII-T--SKPLSLLGQGITDIEIHFLQVKFTAIGVYLDPSDVKTHLDNWKGKTGKELAGDDDFFDA 77 (208)
T ss_dssp CCEE--ETTEEECSEEE-S--SSEEEEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHCGGGTTCCHHHHHTCHHHHHH
T ss_pred ccEE--EccEECCcccc-C--CCcceeeeeeeeeEeeeeeEEEEEEEEEEecHHHHHHHHhhhcCCCHHHHccchHHHHH
Confidence 4556 89999999998 3 378999999999999888899999999999994 5567889999999999999999999
Q ss_pred HhcCCCeeEEEEEEEecCChhHHHHHHHHHhchhcCCCCc---ccHHHHHHHHHhcCCCCCCCCCEEEEEEeCC-CeEEE
Q 023649 153 IYQAPSEKSLKIVLVRDVDGKTFWDALDDAISPRIRIPTP---VDESALSTFRSIFQGRNLMKGTFIFLTWLDP-SKMLV 228 (279)
Q Consensus 153 ll~~~~~k~Lri~~~R~v~~~~~~da~~e~l~~~l~~~~~---~~~~~L~~f~~~f~~~~l~kGd~i~l~~~p~-~gl~v 228 (279)
|+++|++|++||+++|++++++++++++|++++||++.+. +++++|++|.++|+++.++||+.|+|+|.|+ +.|++
T Consensus 78 ii~~p~eK~iri~~ir~l~g~~~~~a~~e~~~~~~~~~~~~~~~e~~aL~~f~~~F~~~~~~~G~~I~~~~~p~~G~L~i 157 (208)
T 4dok_A 78 LASAEMEKVIRVVVIKEIKGAQYGVQLENTVRDRLAEEDKYEEEEETELEKVVGFFQSKYFKANSVITYHFSAKDGICEI 157 (208)
T ss_dssp HHHSSSCEEEEEEESSCEEHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHTCEECTTCEEEEEECSSSCCEEE
T ss_pred HhcCcccceEEEEEEecCCcHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHhccCCCCCCCEEEEEEeCCCCeEEE
Confidence 9999999999999999999999999999999999987763 5788999999999998999999999999988 67888
Q ss_pred EEeCCCCCcccceeeCCHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHhhh
Q 023649 229 SISGDGLPSGVDATIESENVTFALYDVFF-GGAPVSPSLKASVATGLATIL 278 (279)
Q Consensus 229 ~~n~~G~p~~~~g~I~s~~f~~Alf~iwL-G~~pvsp~lK~~l~~~l~~ll 278 (279)
.+..||++ ...++|+++.||+|+|++|| |++|+||++|++++++|++||
T Consensus 158 ~~s~~G~~-~~~~~I~~~~l~~All~~yl~G~~pvsp~lK~sla~~l~~ll 207 (208)
T 4dok_A 158 GFETEGKE-EEKLKVENANVVGMMQRWYLSGSRGVSPSTIVSIADSISAVL 207 (208)
T ss_dssp EEECTTSC-CEEEEECCHHHHHHHHHHHSCTTTCSCHHHHHHHHHHHHHHH
T ss_pred EEEeCCEe-ccccccCCHHHHHHHHHHeeCCCCCCCHHHHHHHHHHHHHhh
Confidence 87656753 23468999999999999999 999999999999999999997
No 6
>3uep_A YSCQ-C, type III secretion protein; cytosol, protein transport; 2.25A {Yersinia pseudotuberculosis}
Probab=30.51 E-value=51 Score=24.54 Aligned_cols=25 Identities=24% Similarity=0.149 Sum_probs=21.7
Q ss_pred CCCCCEEEEEEeCCCeEEEEEeCCCCC
Q 023649 210 LMKGTFIFLTWLDPSKMLVSISGDGLP 236 (279)
Q Consensus 210 l~kGd~i~l~~~p~~gl~v~~n~~G~p 236 (279)
+++||+|.+....+..+.+++| |++
T Consensus 40 L~~GdVI~Ld~~~~~~v~i~vn--g~~ 64 (96)
T 3uep_A 40 LEPGSLIDLTTPVDGEVRLLAN--GRL 64 (96)
T ss_dssp CCTTCEEEEEEESSCEEEEEET--TEE
T ss_pred CCCCCEEEeCCCCCCcEEEEEC--CEE
Confidence 7889999999988889999996 643
No 7
>1o6a_A Putative flagellar motor switch protein FLIN; C- terminal PR fragment, structural genomics, joint center for structural JCSG; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A
Probab=26.05 E-value=65 Score=23.76 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.3
Q ss_pred CCCCCEEEEEEeCCCeEEEEEeCCCCC
Q 023649 210 LMKGTFIFLTWLDPSKMLVSISGDGLP 236 (279)
Q Consensus 210 l~kGd~i~l~~~p~~gl~v~~n~~G~p 236 (279)
+++||+|.+....+..+.+++| |++
T Consensus 40 L~~GdVI~Ld~~~~~~v~v~v~--g~~ 64 (96)
T 1o6a_A 40 MIHGSIIELDKLTGEPVDILVN--GKL 64 (96)
T ss_dssp CCTTCEEEEEEETTCCEEEEET--TEE
T ss_pred CCCCCEEEeCCCCCCcEEEEEC--CEE
Confidence 7899999999988888999996 643
No 8
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=25.50 E-value=39 Score=24.39 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=20.8
Q ss_pred CCCCCEEEEEEeCCCeEEEEEeCCCCC
Q 023649 210 LMKGTFIFLTWLDPSKMLVSISGDGLP 236 (279)
Q Consensus 210 l~kGd~i~l~~~p~~gl~v~~n~~G~p 236 (279)
+++||.|.+....+..+.+++| |++
T Consensus 36 L~~GdVi~Ld~~~~e~v~i~vn--g~~ 60 (84)
T 1o9y_A 36 LDAGTILEVTGISPGHATLCHG--EQV 60 (84)
T ss_dssp CCTTCEEEECSSCTTEEEEEET--TEE
T ss_pred CCCCCEEEeCCCCCCCEEEEEC--CEE
Confidence 8899999998766778999996 643
No 9
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=21.63 E-value=90 Score=22.95 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=19.9
Q ss_pred CCCCCCEEEEEEeCCCeEEEEEe
Q 023649 209 NLMKGTFIFLTWLDPSKMLVSIS 231 (279)
Q Consensus 209 ~l~kGd~i~l~~~p~~gl~v~~n 231 (279)
+|+.||.++|.+..+..+.|.+-
T Consensus 77 ~L~~GD~lvF~~~~~~~f~V~If 99 (104)
T 1yel_A 77 NLEDGKYLQFIYDRDRTFYVIIY 99 (104)
T ss_dssp TCCTTCEEEEEECSSSEEEEEEE
T ss_pred CCCCCCEEEEEEcCCCeEEEEEE
Confidence 58999999999998888888764
No 10
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=17.21 E-value=68 Score=24.92 Aligned_cols=24 Identities=13% Similarity=0.308 Sum_probs=18.1
Q ss_pred CCCCCCCEEEEEEeCCC--eEEEEEe
Q 023649 208 RNLMKGTFIFLTWLDPS--KMLVSIS 231 (279)
Q Consensus 208 ~~l~kGd~i~l~~~p~~--gl~v~~n 231 (279)
..|+.||.++|.+..++ .+.|.+.
T Consensus 90 ~~L~~GD~~~F~~~~~~~~~l~I~~r 115 (130)
T 1wid_A 90 KNLRAGDVVSFSRSNGQDQQLYIGWK 115 (130)
T ss_dssp TTCCTTCEEEEEECCSSSCCEEEEEE
T ss_pred cCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 45999999999998754 4566654
Done!