Query 023651
Match_columns 279
No_of_seqs 398 out of 3049
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 10:29:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023651.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023651hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hia_A LOV protein; PAS, HTH, 99.9 1.7E-21 5.8E-26 151.0 12.4 140 16-156 5-149 (176)
2 2gj3_A Nitrogen fixation regul 99.9 1.2E-20 4.2E-25 137.1 16.1 117 17-137 4-120 (120)
3 3ewk_A Sensor protein; PAS dom 99.8 4.1E-20 1.4E-24 149.7 17.3 109 31-143 2-110 (227)
4 2pr5_A Blue-light photorecepto 99.8 7.2E-20 2.4E-24 135.3 15.8 121 21-144 2-122 (132)
5 1n9l_A PHOT-LOV1, putative blu 99.8 3.6E-19 1.2E-23 127.2 15.4 108 27-135 2-109 (109)
6 3mr0_A Sensory box histidine k 99.8 3.8E-19 1.3E-23 133.2 15.5 125 15-143 6-132 (142)
7 3ue6_A Aureochrome1; PAS/LOV d 99.8 3.9E-19 1.3E-23 135.7 13.6 122 17-142 34-158 (166)
8 3f1p_B ARYL hydrocarbon recept 99.8 2.1E-19 7.1E-24 130.5 10.8 116 19-138 3-120 (121)
9 3p7n_A Sensor histidine kinase 99.8 1.2E-18 4.1E-23 143.7 15.0 120 15-138 60-182 (258)
10 3t50_A Blue-light-activated hi 99.8 1.2E-18 4.2E-23 127.1 13.2 117 23-143 2-121 (128)
11 3f1p_A Endothelial PAS domain- 99.8 1.2E-18 4.2E-23 125.5 9.1 108 27-138 8-116 (117)
12 4eet_B Phototropin-2; LOV, blu 99.8 1.3E-17 4.4E-22 118.7 14.1 111 23-137 2-115 (115)
13 3sw1_A Sensory box protein; li 99.8 9E-18 3.1E-22 127.7 13.9 123 17-143 24-149 (162)
14 3nja_A Probable ggdef family p 99.8 4.7E-18 1.6E-22 122.8 11.3 120 15-138 4-125 (125)
15 3mqq_A Transcriptional regulat 99.8 2.7E-18 9.2E-23 124.4 9.5 115 19-139 4-119 (120)
16 2vv6_A FIXL, sensor protein FI 99.8 1.3E-17 4.3E-22 120.7 12.7 113 26-144 1-117 (119)
17 1d06_A Nitrogen fixation regul 99.8 2.1E-17 7.2E-22 121.5 13.9 124 4-134 3-130 (130)
18 2z6d_A Phototropin-2; PAS-fold 99.8 4.7E-17 1.6E-21 117.3 15.3 124 15-142 3-129 (130)
19 3lyx_A Sensory BOX/ggdef domai 99.7 5E-17 1.7E-21 116.3 14.9 119 16-138 5-123 (124)
20 2r78_A Sensor protein; sensory 99.7 2E-16 6.7E-21 114.3 15.6 110 15-134 8-117 (117)
21 3k3c_A Protein RV1364C/MT1410; 99.7 3.5E-17 1.2E-21 124.1 11.4 122 16-143 15-142 (158)
22 3h9w_A Diguanylate cyclase wit 99.7 2.2E-17 7.4E-22 118.6 9.5 111 27-141 2-114 (115)
23 3mxq_A Sensor protein; PSI2, M 99.7 2.1E-17 7.2E-22 125.2 9.6 120 15-139 19-150 (152)
24 2wkq_A NPH1-1, RAS-related C3 99.7 8E-17 2.7E-21 137.6 13.8 119 21-143 14-135 (332)
25 3kx0_X Uncharacterized protein 99.7 7.9E-17 2.7E-21 126.1 11.7 122 16-143 35-162 (185)
26 3luq_A Sensor protein; PAS, hi 99.7 2.5E-16 8.7E-21 111.8 13.2 111 18-134 3-114 (114)
27 3ewk_A Sensor protein; PAS dom 99.7 4.9E-16 1.7E-20 125.6 14.8 111 18-132 111-227 (227)
28 3icy_A Sensor protein; sensory 99.7 1.8E-16 6.3E-21 113.5 8.7 114 17-134 3-118 (118)
29 2v0u_A NPH1-1, LOV2; kinase, t 99.7 6.6E-16 2.3E-20 113.8 11.8 116 20-139 4-122 (146)
30 3bwl_A Sensor protein; structu 99.7 5.7E-15 1.9E-19 107.3 15.8 120 5-134 5-126 (126)
31 2kdk_A ARYL hydrocarbon recept 99.6 2.4E-15 8.3E-20 108.5 11.8 112 22-137 7-120 (121)
32 3a0r_A Sensor protein; four he 99.6 5.5E-17 1.9E-21 139.3 3.5 180 15-221 5-194 (349)
33 3olo_A Two-component sensor hi 99.6 4.9E-15 1.7E-19 105.9 13.1 109 15-134 10-118 (118)
34 3mjq_A Uncharacterized protein 99.6 8.4E-16 2.9E-20 111.2 8.6 117 21-144 2-118 (126)
35 2l0w_A Potassium voltage-gated 99.6 1.9E-14 6.4E-19 104.9 15.1 114 19-136 20-138 (138)
36 1v9y_A Heme PAS sensor protein 99.6 2.9E-15 1E-19 113.8 10.9 124 15-144 37-164 (167)
37 1byw_A Protein (human ERG pota 99.6 2.6E-14 9E-19 99.6 15.0 107 29-136 2-110 (110)
38 3eeh_A Putative light and redo 99.6 4.2E-15 1.4E-19 106.6 10.0 116 15-134 8-125 (125)
39 4eho_A Bacteriophytochrome, PA 99.6 3.3E-16 1.1E-20 144.7 4.5 117 19-140 519-635 (635)
40 3vol_A Aerotaxis transducer AE 99.6 1.9E-14 6.6E-19 116.8 14.2 113 17-143 21-145 (233)
41 3d72_A Vivid PAS protein VVD; 99.6 1E-13 3.6E-18 103.6 13.7 106 22-132 30-149 (149)
42 3mfx_A Sensory BOX/ggdef famil 99.5 3.4E-14 1.2E-18 104.5 10.0 111 18-135 7-124 (129)
43 3fc7_A HTR-like protein, senso 99.5 1.1E-14 3.9E-19 105.2 5.8 108 16-134 17-125 (125)
44 2qkp_A Uncharacterized protein 99.5 2.9E-13 9.8E-18 102.3 11.0 119 18-143 19-140 (151)
45 4f3l_A Mclock, circadian locom 99.5 9.3E-14 3.2E-18 120.1 8.8 108 29-140 252-360 (361)
46 4hi4_A Aerotaxis transducer AE 99.5 9E-13 3.1E-17 95.5 12.8 105 18-136 5-121 (121)
47 3fg8_A Uncharacterized protein 99.4 6E-14 2E-18 101.3 4.6 109 16-136 10-118 (118)
48 4f3l_B BMAL1B; BHLH, PAS, circ 99.4 2.9E-13 1E-17 117.9 9.7 106 29-138 279-386 (387)
49 2vlg_A Sporulation kinase A; h 99.4 5.2E-13 1.8E-17 95.5 7.7 93 22-121 3-95 (111)
50 3b33_A Sensor protein; structu 99.4 5.5E-12 1.9E-16 89.8 10.8 106 20-134 9-115 (115)
51 3cax_A Uncharacterized protein 99.3 1.2E-11 4.3E-16 106.9 11.5 116 17-142 238-353 (369)
52 1ll8_A PAS kinase; PAS domain, 99.2 1.2E-11 4.1E-16 88.1 4.8 103 26-134 6-113 (114)
53 3a0s_A Sensor protein; PAS-fol 99.2 3.7E-10 1.3E-14 76.2 11.9 95 27-132 1-96 (96)
54 2w0n_A Sensor protein DCUS; si 99.2 9.6E-12 3.3E-16 88.4 3.3 104 15-134 12-118 (118)
55 2jhe_A Transcription regulator 99.1 6.1E-11 2.1E-15 92.6 6.7 107 15-137 77-189 (190)
56 3rty_A Period circadian protei 99.1 2.2E-10 7.7E-15 97.5 10.6 107 28-137 154-265 (339)
57 1nwz_A PYP, photoactive yellow 99.1 1.2E-09 4.1E-14 78.7 12.4 99 21-126 20-120 (125)
58 1mzu_A PPR; photoactive yellow 99.1 2E-09 6.8E-14 77.7 11.9 99 21-126 25-125 (129)
59 4dj3_A Period circadian protei 99.0 3.9E-09 1.3E-13 89.0 11.9 104 29-135 175-281 (317)
60 3gdi_A Period circadian protei 98.9 7.6E-09 2.6E-13 86.9 11.2 104 30-136 167-272 (309)
61 4dj2_A Period circadian protei 98.9 6.9E-09 2.4E-13 87.6 9.1 105 29-136 177-283 (320)
62 2ykf_A Pdtas, probable sensor 98.2 1.7E-09 5.9E-14 91.0 0.0 110 24-144 176-294 (305)
63 4f3l_A Mclock, circadian locom 98.2 8.9E-06 3E-10 69.9 11.1 65 17-84 85-149 (361)
64 3rty_A Period circadian protei 97.8 5.5E-05 1.9E-09 64.3 8.0 48 31-81 6-54 (339)
65 4f3l_B BMAL1B; BHLH, PAS, circ 97.7 4.4E-05 1.5E-09 66.2 5.3 62 18-82 86-148 (387)
66 1oj5_A Steroid receptor coacti 97.6 7.9E-05 2.7E-09 53.4 5.4 101 30-134 9-113 (132)
67 4dj2_A Period circadian protei 96.7 0.00057 1.9E-08 57.5 2.4 56 23-81 31-87 (320)
68 3gdi_A Period circadian protei 96.7 0.0005 1.7E-08 57.5 1.7 57 23-82 20-77 (309)
69 4dj3_A Period circadian protei 96.5 0.00096 3.3E-08 56.0 2.5 56 23-81 31-87 (317)
70 3bwl_A Sensor protein; structu 94.6 0.045 1.5E-06 38.0 4.6 30 246-278 22-51 (126)
71 2c2a_A Sensor histidine kinase 94.3 0.0086 2.9E-07 48.3 0.3 57 170-226 22-90 (258)
72 2gj3_A Nitrogen fixation regul 92.5 0.11 3.7E-06 35.8 3.6 33 243-278 7-39 (120)
73 2ool_A Sensor protein; bacteri 92.3 0.13 4.3E-06 43.4 4.3 39 32-72 46-84 (337)
74 3ue6_A Aureochrome1; PAS/LOV d 91.2 0.18 6E-06 36.6 3.7 36 243-278 37-72 (166)
75 2r78_A Sensor protein; sensory 90.3 0.25 8.6E-06 33.9 3.6 33 243-278 13-45 (117)
76 1d06_A Nitrogen fixation regul 89.2 0.29 9.8E-06 34.1 3.2 33 243-278 18-50 (130)
77 4fpp_A Phosphotransferase; fou 88.9 0.059 2E-06 43.2 -0.7 47 120-185 17-63 (247)
78 3p7n_A Sensor histidine kinase 87.5 0.52 1.8E-05 37.4 4.1 36 243-278 65-100 (258)
79 4dah_A Sporulation kinase D; a 87.0 8.4 0.00029 29.4 10.8 96 18-139 58-155 (217)
80 2ykf_A Pdtas, probable sensor 86.9 0.12 4.2E-06 42.9 0.0 29 108-138 111-140 (305)
81 2l0w_A Potassium voltage-gated 85.5 0.74 2.5E-05 31.3 3.6 36 243-278 21-56 (138)
82 3olo_A Two-component sensor hi 85.1 0.81 2.8E-05 30.5 3.6 32 244-278 16-47 (118)
83 4ew8_A Sensor protein DIVL; si 83.2 0.18 6.2E-06 40.4 -0.6 56 170-225 42-107 (268)
84 3mxq_A Sensor protein; PSI2, M 80.3 1.2 4.1E-05 32.6 3.0 33 243-278 24-56 (152)
85 3luq_A Sensor protein; PAS, hi 79.3 1.6 5.6E-05 28.5 3.3 33 243-278 5-37 (114)
86 3b33_A Sensor protein; structu 79.1 1.9 6.6E-05 28.7 3.7 32 244-278 10-41 (115)
87 3fc7_A HTR-like protein, senso 78.0 1.3 4.3E-05 29.9 2.5 33 243-278 21-53 (125)
88 2z6d_A Phototropin-2; PAS-fold 77.8 2.2 7.4E-05 28.2 3.6 36 243-278 8-43 (130)
89 4e04_A Bacteriophytochrome (li 77.6 8.6 0.0003 32.0 7.7 51 31-88 32-82 (327)
90 3jz3_A Sensor protein QSEC; he 77.3 0.25 8.5E-06 38.2 -1.7 53 169-221 3-64 (222)
91 2w0n_A Sensor protein DCUS; si 77.0 1.1 3.9E-05 29.7 1.9 33 243-278 17-49 (118)
92 3k3c_A Protein RV1364C/MT1410; 76.7 1.7 5.8E-05 31.0 2.9 33 243-278 19-52 (158)
93 3fg8_A Uncharacterized protein 76.5 1.3 4.6E-05 30.0 2.2 33 243-278 14-46 (118)
94 3lyx_A Sensory BOX/ggdef domai 75.8 2.4 8.2E-05 27.8 3.4 33 243-278 9-41 (124)
95 3kx0_X Uncharacterized protein 73.7 2.2 7.5E-05 31.7 2.9 33 243-278 39-72 (185)
96 3sw1_A Sensory box protein; li 71.5 1.5 5E-05 31.3 1.4 36 243-278 27-62 (162)
97 3d72_A Vivid PAS protein VVD; 71.2 2.5 8.6E-05 29.6 2.7 27 252-278 36-62 (149)
98 2jhe_A Transcription regulator 69.6 4.1 0.00014 30.2 3.7 34 242-278 81-114 (190)
99 1v9y_A Heme PAS sensor protein 69.1 4.4 0.00015 28.6 3.6 33 243-278 42-74 (167)
100 4ew7_A Conjugative transfer: r 62.9 32 0.0011 23.1 9.9 36 19-57 21-56 (127)
101 3eeh_A Putative light and redo 62.8 6 0.00021 25.8 3.1 33 243-278 13-46 (125)
102 2hje_A Autoinducer 2 sensor ki 61.3 55 0.0019 25.3 9.0 89 24-137 58-146 (221)
103 3lif_A Putative diguanylate cy 58.2 61 0.0021 24.9 10.9 95 18-138 58-156 (254)
104 2qkp_A Uncharacterized protein 57.5 5 0.00017 29.1 2.0 33 243-278 21-56 (151)
105 3s7o_A Bacteriophytochrome; bi 54.3 6.5 0.00022 33.0 2.4 39 31-72 55-94 (343)
106 8tfv_A Protein (thanatin); bac 53.0 6 0.00021 17.5 1.0 9 264-272 6-14 (21)
107 3nja_A Probable ggdef family p 52.8 8.8 0.0003 25.2 2.6 33 243-278 9-41 (125)
108 3c38_A Autoinducer 2 sensor ki 51.7 65 0.0022 25.8 7.6 90 25-139 78-167 (270)
109 1p0z_A Sensor kinase CITA; tra 48.6 63 0.0022 22.2 13.0 77 29-135 51-127 (131)
110 1yyp_B DNA polymerase, POL; pr 48.4 7.4 0.00025 19.0 1.1 12 267-278 5-16 (26)
111 1nwz_A PYP, photoactive yellow 44.0 20 0.00067 25.2 3.2 33 244-279 20-52 (125)
112 3nhq_A Bacteriophytochrome; ph 42.8 50 0.0017 29.3 6.3 36 31-71 29-65 (505)
113 1mzu_A PPR; photoactive yellow 39.7 21 0.00071 25.2 2.8 32 245-279 26-57 (129)
114 3zcc_A HAMP, osmolarity sensor 37.9 3 0.0001 27.8 -1.9 49 170-218 62-113 (114)
115 3zq5_A Phytochrome-like protei 35.7 10 0.00034 33.9 0.7 38 31-71 32-70 (520)
116 3d36_A Sporulation kinase B; G 33.5 6.7 0.00023 30.3 -0.7 53 169-221 15-76 (244)
117 3c8c_A Methyl-accepting chemot 32.2 1.5E+02 0.0053 21.9 8.0 30 107-137 118-148 (240)
118 3hva_A Protein FIMX; ggdef dig 30.7 21 0.00072 25.9 1.7 37 136-172 2-47 (177)
119 4eho_A Bacteriophytochrome, PA 29.4 33 0.0011 31.3 3.1 31 245-278 522-552 (635)
120 1gkz_A [3-methyl-2-oxobutanoat 28.9 7.4 0.00025 33.0 -1.3 56 170-225 123-188 (388)
121 3pxp_A Helix-turn-helix domain 28.8 92 0.0031 25.3 5.4 36 17-55 98-133 (292)
122 3qyy_A Response regulator; C-D 28.1 28 0.00097 24.9 2.0 34 139-172 3-45 (167)
123 3by8_A Sensor protein DCUS; hi 26.2 79 0.0027 22.1 4.1 27 110-137 108-134 (142)
124 3clo_A Transcriptional regulat 25.7 45 0.0015 26.3 2.9 37 23-61 38-74 (258)
125 2e0a_A Pyruvate dehydrogenase 25.4 28 0.00096 29.5 1.8 15 171-185 98-112 (394)
126 1w25_A Stalked-cell differenti 21.1 41 0.0014 28.9 2.0 44 129-172 263-322 (459)
No 1
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.86 E-value=1.7e-21 Score=151.01 Aligned_cols=140 Identities=24% Similarity=0.361 Sum_probs=122.6
Q ss_pred HHHHHHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEEE
Q 023651 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (279)
Q Consensus 16 ~~~~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (279)
..++++.++++++++|+++|.+.++|+|+++|+++++++||++++++|+++..+.++.........+...+..+.++..+
T Consensus 5 ~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 84 (176)
T 4hia_A 5 QFEKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQVV 84 (176)
T ss_dssp HHHHHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceEEE
Confidence 34578899999999999999876669999999999999999999999999888888888888888888888889999999
Q ss_pred EEEEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccchhHHHHhcccccccc---C--Cchhhh
Q 023651 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSED---G--GGSRLR 156 (279)
Q Consensus 96 ~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk~~e~~l~~~~~d---g--NR~l~~ 156 (279)
+...+++|..+|+.++..|+.+ .+|.+.+++++++|||++|++|+++...++| | ||+...
T Consensus 85 ~~~~~~dG~~~~~~~~~~pi~~-~~g~~~~~~~~~~DITe~k~~e~~~~~a~~d~LtgL~NR~~~~ 149 (176)
T 4hia_A 85 LRNYRANDEPFDNLLFLHPVGG-RPDAPDYFLGSQFELGRSGNSEEAAAAGHAGALTGELARIGTV 149 (176)
T ss_dssp EEEECTTCCEEEEEEEEEEESS-BTTBCSEEEEEEEEESSSGGGHHHHHHHHHHHHHHHHHHTTSS
T ss_pred EEEEcCCCCEEEEEEEEEEeeC-CCCCeEEEEEEEEECcHhhHHHHHHHHhhhhHHhhhhhhhhhH
Confidence 9999999999999999999998 7999999999999999999999885333444 3 666544
No 2
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.86 E-value=1.2e-20 Score=137.05 Aligned_cols=117 Identities=20% Similarity=0.377 Sum_probs=105.9
Q ss_pred HHHHHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 023651 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNL 96 (279)
Q Consensus 17 ~~~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 96 (279)
+++++.++++++++|+++|.+ |+|+|+|++|++++||++++++|++...+.++.........+...+..+..+..++
T Consensus 4 ~~~~~~~~~~~~~~i~~~d~~---g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 80 (120)
T 2gj3_A 4 PEIFRQTVEHAPIAISITDLK---ANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGVL 80 (120)
T ss_dssp HHHHHHHHHHCSSEEEEECTT---CBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHhCCCeEEEECCC---CCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCCEEEEE
Confidence 357889999999999999999 99999999999999999999999998877776666666667777788888899999
Q ss_pred EEEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccchhH
Q 023651 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (279)
Q Consensus 97 ~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk 137 (279)
..++++|..+|+.++..|+.+ .+|.+.+++++++|||++|
T Consensus 81 ~~~~~dG~~~~~~~~~~pi~~-~~g~~~~~v~~~~DITe~k 120 (120)
T 2gj3_A 81 VNRRKDKTLYLAELTVAPVLN-EAGETIYYLGMHRDTSELH 120 (120)
T ss_dssp EEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECCSCC
T ss_pred EEEcCCCCEEEEEEEEEEEEC-CCCCEEEEEEEeccCcccC
Confidence 999999999999999999998 8999999999999999986
No 3
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.85 E-value=4.1e-20 Score=149.72 Aligned_cols=109 Identities=20% Similarity=0.417 Sum_probs=99.3
Q ss_pred EEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEEEEEEEcCCCceEEEEE
Q 023651 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLF 110 (279)
Q Consensus 31 i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~ 110 (279)
|+++|.+ |+|+++|+++++++||+++|++|+++..+.++.........+...+..+..+..++...++||+.+|+.+
T Consensus 2 i~i~D~~---g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~ 78 (227)
T 3ewk_A 2 VSITDLQ---GRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRYWVDS 78 (227)
T ss_dssp EEEEETT---CBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSCSCHHHHHHHHHHHTTTCCEEEEEEEECSSSCEEEEEE
T ss_pred EEEECCC---CcEEehHHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCeEEEEEEEEcCCCCEEeeee
Confidence 6889999 9999999999999999999999999887777767777777778888888999999999999999999999
Q ss_pred EEEEeeecCCCcEEEEEEEEeccchhHHHHhcc
Q 023651 111 KMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (279)
Q Consensus 111 ~~~pi~~~~~g~~~~~v~~~~DITerk~~e~~l 143 (279)
+..|+.+ .+|.+.+++++.+|||++|++|+++
T Consensus 79 ~~~p~~d-~~g~~~~~~~~~~DIT~~k~~e~~l 110 (227)
T 3ewk_A 79 TIVPLMD-NAGKPRQYISIRRDITAQKEAEAQL 110 (227)
T ss_dssp EEEEEEC-SSSCEEEEEEEEEECTTTTHHHHHH
T ss_pred EEEEEEc-CCCCEEEEEEEEEehhhHHHHHHHH
Confidence 9999999 8999999999999999999996543
No 4
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.84 E-value=7.2e-20 Score=135.25 Aligned_cols=121 Identities=35% Similarity=0.625 Sum_probs=101.5
Q ss_pred HHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEEEEEEEc
Q 023651 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYK 100 (279)
Q Consensus 21 ~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 100 (279)
+.++++++++|+++|.+.++|+|+|+|+++++++||++++++|+++..+.++.........+...+..+.++..++..++
T Consensus 2 ~~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 81 (132)
T 2pr5_A 2 SHMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYK 81 (132)
T ss_dssp ----CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEEC
T ss_pred hhHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEEEe
Confidence 35789999999999987111399999999999999999999999987777776666666677777888888888999999
Q ss_pred CCCceEEEEEEEEEeeecCCCcEEEEEEEEeccchhHHHHhccc
Q 023651 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGM 144 (279)
Q Consensus 101 ~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk~~e~~l~ 144 (279)
+||..+|+.++..|+.+ . + +.+++++++|||++|++|+++.
T Consensus 82 kdG~~~~~~~~~~~~~~-~-~-~~~~~~~~~DITe~k~~e~~l~ 122 (132)
T 2pr5_A 82 KDGTMFWNELNIDPMEI-E-D-KTYFVGIQNDITKQKEYEKLLE 122 (132)
T ss_dssp TTSCEEEEEEEEEEEEE-T-T-EEEEEEEEEECHHHHHHHHHHH
T ss_pred cCCCeeeeEEEEEeccC-C-C-eeEEEEEEEeCcHHHHHHHHHH
Confidence 99999999999999987 4 4 7899999999999999988773
No 5
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.82 E-value=3.6e-19 Score=127.24 Aligned_cols=108 Identities=41% Similarity=0.805 Sum_probs=97.1
Q ss_pred CCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEEEEEEEcCCCceE
Q 023651 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (279)
Q Consensus 27 ~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~ 106 (279)
++++|+++|.+.++|+|+|+|++|++++||+++|++|+++..+.++.........++..+..+.++..++..+++||+.+
T Consensus 2 ~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~ 81 (109)
T 1n9l_A 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPF 81 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEE
T ss_pred CccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEEEcCCCCEE
Confidence 57899999953333999999999999999999999999987777777777777788888889999999999999999999
Q ss_pred EEEEEEEEeeecCCCcEEEEEEEEeccch
Q 023651 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (279)
Q Consensus 107 ~~~~~~~pi~~~~~g~~~~~v~~~~DITe 135 (279)
|+.+++.|+++ ++|.+.+++++.+|||+
T Consensus 82 ~~~~~~~pi~d-~~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 82 WNLLTVTPIKT-PDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp EEEEEEEEEEC-TTSCEEEEEEEEEECCC
T ss_pred EEEEEEEEEEC-CCCCEEEEEEEEEeCCC
Confidence 99999999999 89999999999999996
No 6
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.82 E-value=3.8e-19 Score=133.24 Aligned_cols=125 Identities=14% Similarity=0.205 Sum_probs=109.7
Q ss_pred HHHHHHHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCC--CCCCCCCCCCCHHHHHHHHHHHHhCCCe
Q 023651 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGR--NGRMFQGPRTNRRTIMEIREAIREERPI 92 (279)
Q Consensus 15 ~~~~~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (279)
.++++|+.+++.++.++|.+|.+ +.++++|+++.+++||+++++.+. .+..+++|++...+...+...+..+.++
T Consensus 6 ~se~rl~~~~~~~~~g~w~~d~~---~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~ 82 (142)
T 3mr0_A 6 ASEERFQLAVSGASAGLWDWNPK---TGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTY 82 (142)
T ss_dssp ---CCHHHHHHHTTCEEEEECTT---TCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHCCCE
T ss_pred HHHHHHHHHHHhCCcEEEEEEcC---CCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCce
Confidence 55678999999999999999999 999999999999999999988764 3556778888888888888888888889
Q ss_pred EEEEEEEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccchhHHHHhcc
Q 023651 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (279)
Q Consensus 93 ~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk~~e~~l 143 (279)
..++++.+++|..+|+...+.|+.+ .+|.+.+++|+++|||++|++|++|
T Consensus 83 ~~e~r~~~~~G~~~w~~~~~~~~~d-~~g~~~~~~G~~~DITerk~~E~~L 132 (142)
T 3mr0_A 83 DVEYRVRTRSGDFRWIQSRGQALWN-SAGEPYRMVGWIMDVTDRKRDEDAL 132 (142)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHHHHHHH
T ss_pred EEEEEEECCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEcCchHHHHHHHH
Confidence 9999999999999999999999999 8999999999999999999998776
No 7
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.81 E-value=3.9e-19 Score=135.75 Aligned_cols=122 Identities=39% Similarity=0.637 Sum_probs=111.5
Q ss_pred HHHHHHHHhhCCCEEEEEcC---CCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeE
Q 023651 17 TLWVHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93 (279)
Q Consensus 17 ~~~~~~~l~~~~~~i~~~d~---~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (279)
..+++.++++++++++++|. + |.|+++|+++++++||++++++|+++..+.++.........+...+..+.++.
T Consensus 34 ~~~~~~~~~~~~~~i~~~d~~~~~---g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 110 (166)
T 3ue6_A 34 DYSLVKALQMAQQNFVITDASLPD---NPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAITKGVDTS 110 (166)
T ss_dssp CCHHHHHHHHTTSCEEEEETTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHhcCCceEEEEEccCCC---CcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHHhcCCceE
Confidence 45788999999999999999 7 99999999999999999999999998888888777877888888888899999
Q ss_pred EEEEEEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccchhHHHHhc
Q 023651 94 VNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142 (279)
Q Consensus 94 ~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk~~e~~ 142 (279)
.++...+++|..+|+.+...|+.+ .+|.+.+++++++|||++|+++..
T Consensus 111 ~e~~~~~~~g~~~~~~~~~~~i~~-~~g~~~~~~~~~~DITe~k~~~~~ 158 (166)
T 3ue6_A 111 VCLLNYRQDGTTFWNLFFVAGLRD-SKGNIVNYVGVQSKVSEDYAKLLV 158 (166)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEECCBCCHHHHHHHH
T ss_pred EEEEEEcCCCCEEEEEEEEEeeeC-CCCCEEEEEEEEEechHHHHHHHH
Confidence 999999999999999999999998 899999999999999999988543
No 8
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.81 E-value=2.1e-19 Score=130.55 Aligned_cols=116 Identities=9% Similarity=0.137 Sum_probs=98.6
Q ss_pred HHHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHH-hCCCeEEEEE
Q 023651 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR-EERPIEVNLL 97 (279)
Q Consensus 19 ~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~e~~ 97 (279)
++..+++++++.|+++|.+ |+++|+|+++++++||++++++|+++..+++|++.+.....+...+. .+..+..+++
T Consensus 3 ~~~ll~e~~~d~i~~~d~~---g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r 79 (121)
T 3f1p_B 3 FKGLNVCQPTRFISRHNIE---GIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFR 79 (121)
T ss_dssp -----CCCCCEEEEEECTT---SBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEEEEE
T ss_pred cccceecCCCceEEEECCC---ceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccEEEE
Confidence 3456889999999999999 99999999999999999999999998888888887777777766664 4556788999
Q ss_pred EEcCCCceEEEEEEEEEeeecC-CCcEEEEEEEEeccchhHH
Q 023651 98 NYKKDGTPFWMLFKMSLVFGKE-DGRATHFVAVQVPIVSRKH 138 (279)
Q Consensus 98 ~~~~dG~~~~~~~~~~pi~~~~-~g~~~~~v~~~~DITerk~ 138 (279)
.++++|..+|+.++..|+.+ . +|.+.+++++.+|||++|+
T Consensus 80 ~~~~dG~~~w~~~~~~~~~~-~~~g~~~~iv~~~~DIT~~kq 120 (121)
T 3f1p_B 80 FRSKNQEWLWMRTSSFTFQN-PYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp EECTTSCEEEEEEEEEEECC-TTCCCCCEEEEEEEECCCC--
T ss_pred EEecCCCEEEEEEEEEEEEC-CCCCceeEEEEEeEEcccccC
Confidence 99999999999999999987 6 7888999999999999986
No 9
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.80 E-value=1.2e-18 Score=143.67 Aligned_cols=120 Identities=30% Similarity=0.597 Sum_probs=106.9
Q ss_pred HHHHHHHHHHhhCCCEEEEEcC---CCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCC
Q 023651 15 RYTLWVHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91 (279)
Q Consensus 15 ~~~~~~~~~l~~~~~~i~~~d~---~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (279)
..+++++.++++++++|+++|. + |+|+|+|++|++++||++++++|+++..+.++.........+...+..+.+
T Consensus 60 ~~~~~~~~i~~~~~~~i~~~d~~~~~---g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 136 (258)
T 3p7n_A 60 PPAQWVLDLIEASPIASVVSDPRLAD---NPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKP 136 (258)
T ss_dssp -CCHHHHHHHHTCSSEEEEECTTSTT---CCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHhcCCccEEEEcCCCCC---CcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHHHcCCC
Confidence 3456899999999999999999 8 899999999999999999999999988888888888888888888889999
Q ss_pred eEEEEEEEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccchhHH
Q 023651 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (279)
Q Consensus 92 ~~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk~ 138 (279)
+..+....+++|..+|+.++..|+.+ .+|.+.+++++++|||++|.
T Consensus 137 ~~~e~~~~~~dG~~~~~~~~~~pi~d-~~g~~~~~v~~~~DITerk~ 182 (258)
T 3p7n_A 137 VLVEILNYKKDGTPFRNAVLVAPIYD-DDDELLYFLGSQVEVDDDQP 182 (258)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEC-TTSCSEEEEEEEEEC-----
T ss_pred eEEEEEEEcCCCCEEEEeeEEEEEEc-CCCCEEEEEEEeeecchhhh
Confidence 99999999999999999999999999 89999999999999999943
No 10
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.79 E-value=1.2e-18 Score=127.07 Aligned_cols=117 Identities=38% Similarity=0.664 Sum_probs=103.5
Q ss_pred HHhhCCCEEEEEcC---CCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEEEEEEE
Q 023651 23 ALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNY 99 (279)
Q Consensus 23 ~l~~~~~~i~~~d~---~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 99 (279)
++++++++++++|. + |+|+++|+++++++||++++++|+++..+.++.........+...+..+..+..++...
T Consensus 2 ~~~~~~~~i~~~d~~~~~---g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 78 (128)
T 3t50_A 2 ASEFTLMPMLITNPHLPD---NPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINY 78 (128)
T ss_dssp CCCCCSSCEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ccccCcccEEEecCCCCC---CcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEE
Confidence 46789999999999 8 99999999999999999999999998888877777877778888888888888899999
Q ss_pred cCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccchhHHHHhcc
Q 023651 100 KKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (279)
Q Consensus 100 ~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk~~e~~l 143 (279)
+++|..+|+.++..|+.+ .+|.+.+++++++|||++|++|++.
T Consensus 79 ~~~g~~~~~~~~~~~i~~-~~g~~~~~~~~~~DITe~k~~e~~~ 121 (128)
T 3t50_A 79 KKSGEAFWNRLHISPVHN-ANGRLQHFVSSQLDVTLELVPRGSL 121 (128)
T ss_dssp CTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHC-----
T ss_pred cCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEEcchhhhhhhhh
Confidence 999999999999999998 8999999999999999999998876
No 11
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.77 E-value=1.2e-18 Score=125.55 Aligned_cols=108 Identities=8% Similarity=0.170 Sum_probs=97.7
Q ss_pred CCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEEEEEEEcCCCceE
Q 023651 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (279)
Q Consensus 27 ~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~ 106 (279)
+++.+++.|.+ |+++|+|+++++++||++++++|+++..+++|++.+.....+...+..+..+..+++.++++|..+
T Consensus 8 ~~~~i~~~d~~---g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~ 84 (117)
T 3f1p_A 8 SKTFLSEHSMD---MKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYV 84 (117)
T ss_dssp GGEEEEEECTT---CBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSEE
T ss_pred CccEEEEECCC---ceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCCEE
Confidence 45788999999 999999999999999999999999988888888887777777788877877777899999999999
Q ss_pred EEEEEEEEeeecC-CCcEEEEEEEEeccchhHH
Q 023651 107 WMLFKMSLVFGKE-DGRATHFVAVQVPIVSRKH 138 (279)
Q Consensus 107 ~~~~~~~pi~~~~-~g~~~~~v~~~~DITerk~ 138 (279)
|+.+...|+.+ + +|.+.+++++.+|||++|+
T Consensus 85 w~~~~~~~~~d-~~~g~~~~iv~~~~DITer~~ 116 (117)
T 3f1p_A 85 WLETQGTVIYN-PRNLQPQCIMCVNYVLSEIEK 116 (117)
T ss_dssp EEEEEEEEEEE-TTTTEEEEEEEEEEECSCCBC
T ss_pred EEEEeeEEEEC-CCCCCceEEEEEeeecccccc
Confidence 99999999998 6 7899999999999999885
No 12
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.77 E-value=1.3e-17 Score=118.68 Aligned_cols=111 Identities=41% Similarity=0.778 Sum_probs=99.8
Q ss_pred HHhhCCCEEEEEcC---CCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEEEEEEE
Q 023651 23 ALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNY 99 (279)
Q Consensus 23 ~l~~~~~~i~~~d~---~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 99 (279)
.+++++++++++|. + |+++++|+++++++||++++++|+++..+.++.........+...+..+..+..+....
T Consensus 2 ~l~~~~~~i~~~d~~~~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (115)
T 4eet_B 2 SPEFIEKNFVITDPRLPD---NPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLINY 78 (115)
T ss_dssp ---CCCCSEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ccccCCCcEEEEcCCCCC---CcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEEe
Confidence 47889999999999 8 99999999999999999999999998888877777777778888888888888899999
Q ss_pred cCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccchhH
Q 023651 100 KKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (279)
Q Consensus 100 ~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk 137 (279)
+++|..+|+.++..|+.+ .+|.+.+++++++|||+++
T Consensus 79 ~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~DITer~ 115 (115)
T 4eet_B 79 TKSGKKFWNLLHLQPVRD-QKGELQYFIGVQLDGSDHV 115 (115)
T ss_dssp CTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEECSCCC
T ss_pred cCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEeecccC
Confidence 999999999999999998 8999999999999999874
No 13
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.77 E-value=9e-18 Score=127.67 Aligned_cols=123 Identities=24% Similarity=0.444 Sum_probs=112.4
Q ss_pred HHHHHHHHhhCCCEEEEEcCCCCCC---cEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeE
Q 023651 17 TLWVHEALDELPDSFTITDPSISGH---PIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93 (279)
Q Consensus 17 ~~~~~~~l~~~~~~i~~~d~~~~~g---~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (279)
+++++.++++++++++++|.+ | +|+++|+++++++|++.++++|+++..+.++.........+...+..+..+.
T Consensus 24 ~~~~~~i~~~~~~~i~~~d~~---~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (162)
T 3sw1_A 24 AQLLQSMVDASNDGIVVAEKE---GDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRPCR 100 (162)
T ss_dssp HHHHHHHHHTCSSEEEEEEEE---TTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHhhccCcEEEEeCC---CCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCCCc
Confidence 467899999999999999999 9 9999999999999999999999998877777777777777788888888888
Q ss_pred EEEEEEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccchhHHHHhcc
Q 023651 94 VNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (279)
Q Consensus 94 ~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk~~e~~l 143 (279)
.++...+++|..+|+.+...|+.+ .+|.+.+++++++|||++|++|+++
T Consensus 101 ~~~~~~~~~g~~~~~~~~~~~i~~-~~g~~~~~~~~~~DiTe~k~~e~~l 149 (162)
T 3sw1_A 101 EVLRNYRKDGSAFWNELSITPVKS-DFDQRTYFIGIQKDVSRQVELEREL 149 (162)
T ss_dssp EEEEEECTTCCEEEEEEEEEEEEC-SSSSCEEEEEEEEECHHHHHHHHHH
T ss_pred ceEEEECCCCCEEEEEEEEEEeec-CCCCEEEEEEEEEeCcHHHHHHHHH
Confidence 899889999999999999999998 7899999999999999999998776
No 14
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.76 E-value=4.7e-18 Score=122.84 Aligned_cols=120 Identities=14% Similarity=0.090 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcC--CCCCCCCCCCCCHHHHHHHHHHHHhCCCe
Q 023651 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIG--RNGRMFQGPRTNRRTIMEIREAIREERPI 92 (279)
Q Consensus 15 ~~~~~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (279)
..+++++.++++++.++|.+|.+ +.++++|+++++++||+++++.| ..+..+.+|++.......+...+..+.++
T Consensus 4 ~~~~~l~~~~~~~~~~i~~~d~~---~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 80 (125)
T 3nja_A 4 MAEKLLHTAESDAGIGSWVLHME---SGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPF 80 (125)
T ss_dssp -------------CCEEEEEETT---TTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCCCE
T ss_pred HHHHHHHHHHHhCCeeEEEEEcC---CCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCCCc
Confidence 45668899999999999999999 99999999999999999999988 33444566777777777777788888888
Q ss_pred EEEEEEEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccchhHH
Q 023651 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (279)
Q Consensus 93 ~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk~ 138 (279)
..+++..+++|..+|+.+...|+.+ .+|.+.+++++++|||++|+
T Consensus 81 ~~e~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~g~~~DITe~k~ 125 (125)
T 3nja_A 81 DVEYRIVRPDGQVRELLERNHIQRQ-ASGQVDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECCC---
T ss_pred eEEEEEECCCCCEEEEEEeeEEEEC-CCCCEEEEEEEEEecccccC
Confidence 8899999999999999999999998 89999999999999999985
No 15
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.76 E-value=2.7e-18 Score=124.40 Aligned_cols=115 Identities=12% Similarity=0.106 Sum_probs=92.3
Q ss_pred HHHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCC-HHHHHHHHHHHHhCCCeEEEEE
Q 023651 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTN-RRTIMEIREAIREERPIEVNLL 97 (279)
Q Consensus 19 ~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~e~~ 97 (279)
.|+.++++++++++ +|.+ |+|+++|+++++++||++++++|+++..+++++.. ......+...+..+..+..++.
T Consensus 4 ~~~~~~~~~~~~i~-~~~~---g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 79 (120)
T 3mqq_A 4 DYKTAFHLAPIGLV-LSRD---RVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRI 79 (120)
T ss_dssp CHHHHHHHCSSEEE-EEET---TEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred hHHHHHhcCCceEE-EecC---CEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEE
Confidence 37889999999996 4778 99999999999999999999999997776654322 3344455566677788888999
Q ss_pred EEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccchhHHH
Q 023651 98 NYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (279)
Q Consensus 98 ~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk~~ 139 (279)
..+++|..+|+.++..|+ + .+|...+++++++|||++|++
T Consensus 80 ~~~~dG~~~~~~~~~~~~-~-~~~~~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 80 MKRAGGELFWCHVTGRAL-D-RTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp EECTTSCEEEEEEEEEES-S-TTSTTSSEEEEEEESCC----
T ss_pred EEeCCCCEEEEEEEEEEC-C-CCCCceeEEEEEEcccHhhcc
Confidence 999999999999999999 4 466677899999999999986
No 16
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.76 E-value=1.3e-17 Score=120.72 Aligned_cols=113 Identities=19% Similarity=0.250 Sum_probs=79.2
Q ss_pred hCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCC----eEEEEEEEcC
Q 023651 26 ELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP----IEVNLLNYKK 101 (279)
Q Consensus 26 ~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~e~~~~~~ 101 (279)
+++++|+++|.+ |.|+++|+++++++||++++++|+++..+.++.........+......+.. ...++...++
T Consensus 1 ~~~d~i~~~d~~---g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (119)
T 2vv6_A 1 TIPDAMIVIDGH---GIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRR 77 (119)
T ss_dssp -CCCEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECT
T ss_pred CCcceEEEECCC---CeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEEEeC
Confidence 368999999999 999999999999999999999999987776554433333333333333332 2346677899
Q ss_pred CCceEEEEEEEEEeeecCCCcEEEEEEEEeccchhHHHHhccc
Q 023651 102 DGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGM 144 (279)
Q Consensus 102 dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk~~e~~l~ 144 (279)
||+.+|+.++..|+.+ .+. .+++++++|||++|++|++|.
T Consensus 78 dG~~~~~~~~~~~~~~--~~~-~~~~~~~~DITerk~~e~~l~ 117 (119)
T 2vv6_A 78 DGTTFPMHLSIGEMQS--GGE-PYFTGFVRDLTEHQQTQARLQ 117 (119)
T ss_dssp TSCEEEEEEEEEEEEE--TTE-EEEEEEEEECC----------
T ss_pred CCCEEEEEEEEEEEEE--CCe-EEEEEEEEEcHHHHHHHHHHH
Confidence 9999999999999976 333 568999999999999988773
No 17
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.75 E-value=2.1e-17 Score=121.53 Aligned_cols=124 Identities=17% Similarity=0.242 Sum_probs=96.5
Q ss_pred hHhHHHHHhhHHHHHHHHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHH
Q 023651 4 QLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83 (279)
Q Consensus 4 ql~~~~~~l~~~~~~~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~ 83 (279)
++...++.+. +.+++++.++++++++|+++|.+ |.|+++|+++++++||+++|++|+++..+.++.........+.
T Consensus 3 ~~~~~e~~l~-~~~~~~~~l~~~~~d~i~~~d~~---g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~ 78 (130)
T 1d06_A 3 HMLETEDVVR-ARDAHLRSILDTVPDATVVSATD---GTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQ 78 (130)
T ss_dssp HHHHHHHHHH-HHTSCHHHHHTTCSSEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHHHHHHHHHhhCcCeEEEECCC---CeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHH
Confidence 4556666766 66778999999999999999999 9999999999999999999999999877776554333333333
Q ss_pred HHHHhCCC----eEEEEEEEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccc
Q 023651 84 EAIREERP----IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (279)
Q Consensus 84 ~~~~~~~~----~~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DIT 134 (279)
.....+.. ...++..+++||+.+|+.++..|+.+ ++. .+++++++|||
T Consensus 79 ~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~~~~~~--~~~-~~~~~~~~DIT 130 (130)
T 1d06_A 79 RYMATGEKRIIGIDRVVSGQRKDGSTFPMKLAVGEMRS--GGE-RFFTGFIRDLT 130 (130)
T ss_dssp HHHHHCCCSSTTSCEEEEEECTTSCEEEEEEEEEEEEE--TTE-EEEEEEEEECC
T ss_pred HHHhcCCccccCCeeEEEEEeCCCCEEEEEEEEEEEEE--CCe-EEEEEEEEECc
Confidence 33333332 23467778999999999999999976 333 46899999998
No 18
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.75 E-value=4.7e-17 Score=117.31 Aligned_cols=124 Identities=38% Similarity=0.732 Sum_probs=105.2
Q ss_pred HHHHHHHHHHhhCCCEEEEEc---CCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCC
Q 023651 15 RYTLWVHEALDELPDSFTITD---PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91 (279)
Q Consensus 15 ~~~~~~~~~l~~~~~~i~~~d---~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (279)
+.++.++.++++++++++++| .+ |.++++|+++++++|++.++++|+++..+.++.........+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~i~~~d~~d~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (130)
T 2z6d_A 3 RVSQELKTALSTLQQTFVVSDATQPH---CPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKS 79 (130)
T ss_dssp ----CHHHHHHHTTCEEEEEETTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHhcccceeeeeccCCC---CcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCc
Confidence 345678899999999999999 88 999999999999999999999999988787777777777777778888888
Q ss_pred eEEEEEEEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccchhHHHHhc
Q 023651 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142 (279)
Q Consensus 92 ~~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk~~e~~ 142 (279)
+..++...+++|..+|+.+...|+.+ .+|.+.+++++++|||++|++|++
T Consensus 80 ~~~~~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~~~~e~e 129 (130)
T 2z6d_A 80 YCGRLLNYKKDGTPFWNLLTVTPIKD-DQGNTIKFIGMQVEVSKYTEGVND 129 (130)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECCTTC-----
T ss_pred ceeEEEEEcCCCcEEEEEEEEEEEEC-CCCCeeEEEEEEecchHHHHhhcc
Confidence 88888888999999999999999998 889999999999999999988653
No 19
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.75 E-value=5e-17 Score=116.32 Aligned_cols=119 Identities=20% Similarity=0.264 Sum_probs=104.8
Q ss_pred HHHHHHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEEE
Q 023651 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (279)
Q Consensus 16 ~~~~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (279)
.+++++.++++++++++++|.+ |.++++|+++++++|++.++++|++...+.++.........+...+..+..+..+
T Consensus 5 ~~~~~~~~~~~~~~~i~~~d~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (124)
T 3lyx_A 5 ILKQRAKAFDYVFDAIVVTDLQ---GFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTGE 81 (124)
T ss_dssp HHHHHHHGGGTCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEEE
T ss_pred HHHHHHHHHhhcCceEEEECCC---CcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccce
Confidence 4467889999999999999999 9999999999999999999999998776666665556666677788888888888
Q ss_pred EEEEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccchhHH
Q 023651 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (279)
Q Consensus 96 ~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk~ 138 (279)
.....++|..+|+.+...|+.+ .+|.+.+++++++|||++|+
T Consensus 82 ~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~~~ 123 (124)
T 3lyx_A 82 IRMLHKDGHIGWIESMCVPIYG-ENYQMVGALGINRDITKRKK 123 (124)
T ss_dssp EEEECTTSCEEEEEEEEEEEEC-STTCEEEEEEEEEECSCC--
T ss_pred EEEEccCCCEEEEEEEEEEEEC-CCCCEEEEEEEEecchhhhc
Confidence 9889999999999999999998 89999999999999999986
No 20
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.73 E-value=2e-16 Score=114.30 Aligned_cols=110 Identities=11% Similarity=0.137 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEE
Q 023651 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (279)
Q Consensus 15 ~~~~~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (279)
..+++++.++++++++|+++|.+ |+|+++|+++++++||+++|++|+++..+.++.... ........+..+..+..
T Consensus 8 ~se~~~~~l~e~~~d~i~~~d~~---g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 83 (117)
T 2r78_A 8 FQSNAYRALFEHAIDGIFIMDAE---GHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSG-WAAASLARIVGGEPLRE 83 (117)
T ss_dssp HHHHHHHHHHHHCSSEEEEECTT---SBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTTS-HHHHHHHHHHTTCCEEE
T ss_pred HhHHHHHHHHhcCCceEEEECCC---CCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccchh-HHHHHHHHHHcCCcEEE
Confidence 56678999999999999999999 999999999999999999999999876664433222 22234455566777888
Q ss_pred EEEEEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccc
Q 023651 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (279)
Q Consensus 95 e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DIT 134 (279)
+.+..++||+.+|+.++..|+. +|. ++++++|||
T Consensus 84 e~~~~~kdG~~~~v~~~~~~~~---~g~---~~~i~~DIT 117 (117)
T 2r78_A 84 ERTVWTRNGDQLTVELSAHLLP---DGK---ILGIARDVS 117 (117)
T ss_dssp EEEEECTTSCEEEEEEEEEECT---TSC---EEEEEEC--
T ss_pred EEEEEecCCCEEEEEEEEEEec---CCe---EEEEEEeCC
Confidence 8889999999999999999884 455 678899997
No 21
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=99.72 E-value=3.5e-17 Score=124.12 Aligned_cols=122 Identities=12% Similarity=0.123 Sum_probs=101.1
Q ss_pred HHHHHHHHHhhCCCEEEEEc-CCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEE
Q 023651 16 YTLWVHEALDELPDSFTITD-PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (279)
Q Consensus 16 ~~~~~~~~l~~~~~~i~~~d-~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (279)
.+++++.+++++|++++++| .+ |+|+++|+++++++|++ +++|+++..++++.........+..++..+.+...
T Consensus 15 ~~~~~~~~~~~~~~~i~~~d~~~---~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 89 (158)
T 3k3c_A 15 AAEDVRRIFEHIPAILVGLEGPD---HRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSG 89 (158)
T ss_dssp CHHHHHHHHHHCSSEEEEEETTT---TEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCCEEE
T ss_pred HHHHHHHHHhcCCceEEEEECCC---cEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHHHhCCcccc
Confidence 45689999999999999999 99 99999999999999999 89999877777665555566667777777877654
Q ss_pred EEE-E--EcC-C-CceEEEEEEEEEeeecCCCcEEEEEEEEeccchhHHHHhcc
Q 023651 95 NLL-N--YKK-D-GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (279)
Q Consensus 95 e~~-~--~~~-d-G~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk~~e~~l 143 (279)
+.. . .+. + |..+|+.++..|+.+ .+|.+.|++++++|||++|++|+++
T Consensus 90 ~~~~~~~~~~~~~g~~~~~~~~~~pi~~-~~g~~~g~~~~~~DITe~k~~e~~l 142 (158)
T 3k3c_A 90 SEWRLQTDYDGSGVEERYFDFVVTPRRR-ADGSIEGVQLIVDDVTSRVRARQAA 142 (158)
T ss_dssp EEEEEEEESSSSCEEEEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHHHHHHH
T ss_pred cceeEEeccCCCCcceEEEEEEEEEeEC-CCCCEEEEEEEEEehhHHHHHHHHH
Confidence 422 2 222 2 677999999999998 8999999999999999999998776
No 22
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.72 E-value=2.2e-17 Score=118.64 Aligned_cols=111 Identities=9% Similarity=0.083 Sum_probs=94.4
Q ss_pred CCCEEEEEc-CCCCCCcEEecchHHHHHhCCCcchhcCCC-CCCCCCCCCCHHHHHHHHHHHHhCCCeEEEEEEEcCCCc
Q 023651 27 LPDSFTITD-PSISGHPIVFASRGFLKMSGFSRAEIIGRN-GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGT 104 (279)
Q Consensus 27 ~~~~i~~~d-~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~ 104 (279)
+++++|.+| .+ |.++|+|+++++++||+++++.|.. +..+++|++.+.....+...+..+.++..++++++++|.
T Consensus 2 a~~giw~~d~~~---~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~ 78 (115)
T 3h9w_A 2 TKAIPWKINWQT---MAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHRDGH 78 (115)
T ss_dssp -CCEEEEEETTT---TEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSC
T ss_pred cceEEEEEEcCC---CcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEEcCCCC
Confidence 568999999 56 8999999999999999999998832 234567777777777778888888888899999999999
Q ss_pred eEEEEEEEEEeeecCCCcEEEEEEEEeccchhHHHHh
Q 023651 105 PFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141 (279)
Q Consensus 105 ~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk~~e~ 141 (279)
.+|+.....|+.+ ++|.+.+++|+..|||++|.+|+
T Consensus 79 ~~w~~~~~~~~~d-~~G~~~~~~G~~~Dit~~k~~~~ 114 (115)
T 3h9w_A 79 YVWIRDVVHVVRD-DSGEVEALIGFMFDISLEHHHHH 114 (115)
T ss_dssp EEEEEEEEEEEEC-TTSCEEEEEEEEEECGGGGC---
T ss_pred EEEEEEEEEEEEC-CCCCEEEEEEEEeccCccccccc
Confidence 9999999999998 89999999999999999999864
No 23
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.72 E-value=2.1e-17 Score=125.17 Aligned_cols=120 Identities=16% Similarity=0.121 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEE
Q 023651 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (279)
Q Consensus 15 ~~~~~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (279)
+.+..++.+++++++||+++|.+ |+|++||+++++++|+++++++|+++..++++ ....+...+..++..|.+...
T Consensus 19 ~~~~~l~~il~~~~~gi~v~D~~---g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl~~G~~~~~ 94 (152)
T 3mxq_A 19 KSRLLLSELLDQLSFALCIVRND---YVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSSFS 94 (152)
T ss_dssp HHHHHHHHHHHHHCCEEEEEETT---SBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcCC---CEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHHhcCCceee
Confidence 55567899999999999999999 99999999999999999999999998877766 445556667778877765432
Q ss_pred EE---------E---EEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccchhHHH
Q 023651 95 NL---------L---NYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (279)
Q Consensus 95 e~---------~---~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk~~ 139 (279)
.. . ...++|...|..+++.|+.+ ++|.+.|++.+++|||+++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d-~~G~v~gv~~ii~DVTe~~~a 150 (152)
T 3mxq_A 95 SWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHS-EDGTIEHVCLCVYDVTIQASQ 150 (152)
T ss_dssp ECCSSSCSSCC----------CCEEEEEEEEEEEC-TTSCEEEEEEEEEEEECC---
T ss_pred ecccccccccccccCCCCCCCcEEEEEEEEEEEEC-CCCCEEEEEEEEEECCHHHhc
Confidence 11 1 12346778888999999999 899999999999999999876
No 24
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.71 E-value=8e-17 Score=137.58 Aligned_cols=119 Identities=38% Similarity=0.721 Sum_probs=109.3
Q ss_pred HHHHhhCCCEEEEEcC---CCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEEEEE
Q 023651 21 HEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLL 97 (279)
Q Consensus 21 ~~~l~~~~~~i~~~d~---~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 97 (279)
..++++++++|+++|. + |+|+|+|+++++++||++++++|+++..+.+++........+...+..+..+..++.
T Consensus 14 ~~~~~~~~~~i~~~D~~~~~---g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 90 (332)
T 2wkq_A 14 ATTLERIEKNFVITDPRLPD---NPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLI 90 (332)
T ss_dssp CCCGGGCCSEEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HhHhhcCCCcEEEecCCCCC---CCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEE
Confidence 3467899999999999 8 999999999999999999999999988888878888778888888889999999999
Q ss_pred EEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccchhHHHHhcc
Q 023651 98 NYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (279)
Q Consensus 98 ~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk~~e~~l 143 (279)
..+++|..+|+.++..|+.+ .+|.+.+++++++|||++|+.+++.
T Consensus 91 ~~~~dG~~~~~~~~~~pi~d-~~g~~~~~v~~~~DITe~k~~e~~~ 135 (332)
T 2wkq_A 91 NYTKSGKKFWNLFHLQPMRD-QKGDVQYFIGVQLDGTEHVRDAAER 135 (332)
T ss_dssp EECTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEEESSCCCHHHHH
T ss_pred EEcCCCCEEEEeeEEEEeEc-CCCCEEEEEEEeccCchhhhhhhhc
Confidence 99999999999999999998 8999999999999999999887765
No 25
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=99.71 E-value=7.9e-17 Score=126.06 Aligned_cols=122 Identities=12% Similarity=0.140 Sum_probs=98.8
Q ss_pred HHHHHHHHHhhCCCEEEEEc-CCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEE
Q 023651 16 YTLWVHEALDELPDSFTITD-PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (279)
Q Consensus 16 ~~~~~~~~l~~~~~~i~~~d-~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (279)
.+++++.+++++|++++++| .+ |+|+++|+++++++|++ +++|+++..++++.........+..++..+.+...
T Consensus 35 ~~~~l~~l~~~~~~~i~~~d~~~---g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 109 (185)
T 3kx0_X 35 AAEDVRRIFEHIPAILVGLEGPD---HRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSG 109 (185)
T ss_dssp CHHHHHHHHHHCSSEEEEEETTT---TEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHHHHCCCEEE
T ss_pred hHHHHHHHHhcCCceEEEEECCC---cEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHHHcCCcccc
Confidence 45689999999999999999 99 99999999999999999 89999977777666555555566777777877655
Q ss_pred EEEEE---cC-C-CceEEEEEEEEEeeecCCCcEEEEEEEEeccchhHHHHhcc
Q 023651 95 NLLNY---KK-D-GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (279)
Q Consensus 95 e~~~~---~~-d-G~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk~~e~~l 143 (279)
+.... ++ + |..+|+.+...|+.+ .+|.+.|++++++|||++|++|+++
T Consensus 110 ~~~~~~~~~~~~gg~~~~~~~~~~pi~~-~~g~~~g~~~~~~DITerk~~e~~~ 162 (185)
T 3kx0_X 110 SEWRLQTDYDGSGVEERYFDFVVTPRRR-ADGSIEGVQLIVDDVTSRVRARQAA 162 (185)
T ss_dssp EEEEEC--------CCEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHTTCC--
T ss_pred cceeEEeeccCCCCccEEEEEEEEEEEC-CCCCEEEEEEEEEeCCHHHHHHHHH
Confidence 43222 22 2 778999999999998 8999999999999999999998773
No 26
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.71 E-value=2.5e-16 Score=111.78 Aligned_cols=111 Identities=16% Similarity=0.225 Sum_probs=91.3
Q ss_pred HHHHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEEE-E
Q 023651 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN-L 96 (279)
Q Consensus 18 ~~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e-~ 96 (279)
++++.++++++++++++|.+ |+++++|+++++++|+++++++|+++..++ ++........+..... +.....+ .
T Consensus 3 ~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~ 77 (114)
T 3luq_A 3 ERLRLFTEHAPAALAMFDRE---MRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRGLA-GEVIRVEED 77 (114)
T ss_dssp HHHHHHHHTCSSEEEEEETT---CBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHHHT-TCCEEEEEE
T ss_pred HHHHHHHhcCCceEEEEcCC---cEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHHhc-CCcceeeee
Confidence 56889999999999999999 999999999999999999999999877766 5555555444445444 4544443 3
Q ss_pred EEEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccc
Q 023651 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (279)
Q Consensus 97 ~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DIT 134 (279)
...+++|..+|+.+...|+.+ .+|.+.|++++++|||
T Consensus 78 ~~~~~~g~~~~~~~~~~p~~~-~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 78 CFVRADGRTQWLRWEVRPWYE-GEGRVGGVVIFTEDIT 114 (114)
T ss_dssp EEEC--CCEEEEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred EEEcCCCcEEEEEEEEEEeEC-CCCCEEEEEEEEeeCC
Confidence 778899999999999999998 8999999999999998
No 27
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.69 E-value=4.9e-16 Score=125.60 Aligned_cols=111 Identities=20% Similarity=0.465 Sum_probs=103.4
Q ss_pred HHHHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEEEEE
Q 023651 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLL 97 (279)
Q Consensus 18 ~~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 97 (279)
++++.++++++++|+++|.+ |+|+++|+++++++||+++|++|+++..+.++.........+++.+..+.++..++.
T Consensus 111 ~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 187 (227)
T 3ewk_A 111 ARLKQAMDANSEMILLTDRA---GRIIYANPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGRLL 187 (227)
T ss_dssp HHHHHHHHTCCSEEEEECTT---SCEEEECHHHHHHHTCCTHHHHSSCGGGGBCTTSCHHHHHHHHHHHHHTCCEECCEE
T ss_pred HHHHHHHhcCcCeEEEEcCC---CcEEEEchHHHHHhCCCHHHHcCCChhhccCCCCCHHHHHHHHHHHHcCCceeEEEE
Confidence 46778999999999999999 999999999999999999999999998888888888888889999999999999999
Q ss_pred EEcCCCc------eEEEEEEEEEeeecCCCcEEEEEEEEec
Q 023651 98 NYKKDGT------PFWMLFKMSLVFGKEDGRATHFVAVQVP 132 (279)
Q Consensus 98 ~~~~dG~------~~~~~~~~~pi~~~~~g~~~~~v~~~~D 132 (279)
.++++|. .+|+.++..|+++ .+|.+.+++++++|
T Consensus 188 ~~~k~G~~~~dg~~~~~~~~~~pi~d-~~g~~~~~v~i~~D 227 (227)
T 3ewk_A 188 NRRRTGPAPHDAEDYWAEISTTPIHT-DGNGLVGYVQIQHD 227 (227)
T ss_dssp EEEECCSSSSCEEEEEEEEEEEEEEC-SSSCEEEEEEEEEC
T ss_pred EECCCCCcCcccceEEEEEEEEEEEC-CCCCEEEEEEEecC
Confidence 9999986 8999999999999 89999999999987
No 28
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.67 E-value=1.8e-16 Score=113.47 Aligned_cols=114 Identities=10% Similarity=0.052 Sum_probs=101.5
Q ss_pred HHHHHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCC--CCCCCCCCCHHHHHHHHHHHHhCCCeEE
Q 023651 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNG--RMFQGPRTNRRTIMEIREAIREERPIEV 94 (279)
Q Consensus 17 ~~~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (279)
+++++.+++++++++|.+|.+ +.++++|+++++++||+++++.|... ..+.+|++.......+...+..+.++..
T Consensus 3 ~~~~~~l~~~~~~~i~~~d~~---~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~ 79 (118)
T 3icy_A 3 AEELQALVDNIPAAIYHLDVS---GQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLTL 79 (118)
T ss_dssp HHHHHHHHTTCCCCCEEECTT---SCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHHHhcCCceEEEEEcC---CCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCceE
Confidence 467899999999999999999 99999999999999999999887653 4566777777777777777778888888
Q ss_pred EEEEEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccc
Q 023651 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (279)
Q Consensus 95 e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DIT 134 (279)
+++..+++|..+|+.....|+.+ ++|.+.+++|+++|||
T Consensus 80 e~r~~~~~g~~~w~~~~~~~~~~-~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 80 VYRIVTPEGKLHWIEDHMRSSFS-DDGLFSGIDGILCEVT 118 (118)
T ss_dssp EEEEECTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred EEEEECCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEecC
Confidence 99999999999999999999998 8999999999999998
No 29
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.67 E-value=6.6e-16 Score=113.77 Aligned_cols=116 Identities=39% Similarity=0.742 Sum_probs=105.2
Q ss_pred HHHHHhhCCCEEEEEcC---CCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 023651 20 VHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNL 96 (279)
Q Consensus 20 ~~~~l~~~~~~i~~~d~---~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 96 (279)
++.++++++++++++|. + |.++++|+++++++|++.++++|+++..+.++.........+...+..+.++..++
T Consensus 4 l~~~~~~~~~~i~~~d~~~~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (146)
T 2v0u_A 4 LATTLERIEKNFVITDPRLPD---NPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQL 80 (146)
T ss_dssp CCCTGGGSSSCEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhcCCCcEEEEcCCCCC---ceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEE
Confidence 45678999999999999 8 99999999999999999999999998888777777777777888888888888888
Q ss_pred EEEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccchhHHH
Q 023651 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (279)
Q Consensus 97 ~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk~~ 139 (279)
...+++|..+|+.+...|+.+ .+|.+.+++++++|||++|+.
T Consensus 81 ~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~~~~ 122 (146)
T 2v0u_A 81 INYTKSGKKFWNLFHLQPMRD-QKGDVQYFIGVQLDGTEHVRD 122 (146)
T ss_dssp EEECTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEEESSCCCH
T ss_pred EEEecCCcEEEEEEEEEEeEC-CCCCEEEEEEEEeechHHHHH
Confidence 889999999999999999998 889999999999999999984
No 30
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.66 E-value=5.7e-15 Score=107.34 Aligned_cols=120 Identities=13% Similarity=0.166 Sum_probs=87.2
Q ss_pred HhHHHHHhhHHHHHHHHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhc--CCCCCCCCCCCCCHHHHHHH
Q 023651 5 LGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEII--GRNGRMFQGPRTNRRTIMEI 82 (279)
Q Consensus 5 l~~~~~~l~~~~~~~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~--G~~~~~l~~~~~~~~~~~~~ 82 (279)
.++.++.+. +.+++++.++++++++|+++|.+ |+|+++|+++++++||++++++ |++...+.+ +.......+
T Consensus 5 r~~~e~~L~-~~~~~~~~l~e~~~~~i~~~d~~---g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~~~ 78 (126)
T 3bwl_A 5 RKRREKRLE-ETSSRLEALFENSPDMIDVLDAD---GTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQTQL 78 (126)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHCSSEEEEECTT---CBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHhhCCcEEEEEcCC---CCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHHHH
Confidence 345566665 67789999999999999999999 9999999999999999999994 565555544 222221111
Q ss_pred HHHHHhCCCeEEEEEEEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccc
Q 023651 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (279)
Q Consensus 83 ~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DIT 134 (279)
. ....+.....+....+++|..+|+.++..|+.. +|.. +++++++|||
T Consensus 79 ~-~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~~--~~~~-~~~~~~~DIT 126 (126)
T 3bwl_A 79 S-GFSVDERRKFEGLYERRDGSTMSVEVHLLRFNL--EGED-RFLAISRDIT 126 (126)
T ss_dssp H-TCCTTCEEEEEEEEECTTSCEEEEEEEEEEEEE--TTEE-EEEEEEEEC-
T ss_pred H-HHhcCCCcceEEEEEeCCCCEEEEEEEeEEEec--CCcE-EEEEEEEeCC
Confidence 1 111233345566777999999999988888754 5554 5788999998
No 31
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.64 E-value=2.4e-15 Score=108.52 Aligned_cols=112 Identities=11% Similarity=0.091 Sum_probs=93.6
Q ss_pred HHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCC-eEEEEEEEc
Q 023651 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP-IEVNLLNYK 100 (279)
Q Consensus 22 ~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~ 100 (279)
.++++++++++.+|.+ |+++|+|+++++++||++++++|+++..+.+|++.......+...+..+.. ...+++..+
T Consensus 7 ~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~ 83 (121)
T 2kdk_A 7 EINVKPTEFITRFAVN---GKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFRA 83 (121)
T ss_dssp CCCCCSSEEEEEECTT---SBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEEEC
T ss_pred ccccCCccEEEEECCC---eeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccEEEEEEE
Confidence 4567889999999999 999999999999999999999999988888887766666656655654343 467888899
Q ss_pred CCCceEEEEEEEEEeeecCC-CcEEEEEEEEeccchhH
Q 023651 101 KDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIVSRK 137 (279)
Q Consensus 101 ~dG~~~~~~~~~~pi~~~~~-g~~~~~v~~~~DITerk 137 (279)
++|..+|+.+...|+.+ .. +.+..++++.+||++.+
T Consensus 84 ~dG~~~~~~~~~~~~~d-~~~~~~~~~v~~~~~i~~~~ 120 (121)
T 2kdk_A 84 KDGSFVTLKSQWFSFTN-PDTKELEYIVSVNTLVLGHS 120 (121)
T ss_dssp SSSCEEEEEEEEEEEEC-CSSSCEEEEEEEEECCSSCC
T ss_pred cCCCEEEEEEEEEEEEC-CCCCeeeEEEEEEEeccccC
Confidence 99999999999999987 54 56777899999999864
No 32
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.64 E-value=5.5e-17 Score=139.33 Aligned_cols=180 Identities=7% Similarity=0.047 Sum_probs=124.2
Q ss_pred HHHHHHHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEE
Q 023651 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (279)
Q Consensus 15 ~~~~~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (279)
+.+++++.++++++++|+++|.+ |+|+++|+++++++||++++++|+++..+..+ .............+.+...
T Consensus 5 ~~~~~~~~i~~~~~~~i~~~d~~---g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 78 (349)
T 3a0r_A 5 HLRNFSESILESLETAIITLSKD---GRITEWNKKAEQLFGLKKENVLGRRLKDLPDF---EEIGSVAESVFENKEPVFL 78 (349)
T ss_dssp ----CCCSSGGGSSSEEEEEESS---SBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTT---THHHHHHHHHHHHCCCCEE
T ss_pred HHHHHHHHHHhhhcCeEEEECCC---CCEEeeHHHHHHHhCCCHHHHcCcCHHHCcCh---hHHHHHHHHHHhcCCceee
Confidence 44556788999999999999999 99999999999999999999999998777322 2233334455555555433
Q ss_pred EEEEEcCCCceEEEEEEEEEeeecCCCcE-EEEEEEEeccchhHHHHhccccccccCCchhhhHHHHHhhccccCCccce
Q 023651 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRA-THFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLL 173 (279)
Q Consensus 95 e~~~~~~dG~~~~~~~~~~pi~~~~~g~~-~~~v~~~~DITerk~~e~~l~~~~~dgNR~l~~~~~l~~~~r~~~~~~l~ 173 (279)
.. ..+..+|+.+...|+.+ ..|.. .|++++++|||++|++|+++... +.++ ....++.
T Consensus 79 ~~----~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~DiTe~~~~e~~~~~~-----------~~~~-----~~~~~~~ 137 (349)
T 3a0r_A 79 NF----YKFGERYFNIRFSPFRN-AKTQLLEGVIITIDDVTELYKYEEERKRR-----------ERLS-----ILGEMTA 137 (349)
T ss_dssp EC----CCBTTBCCEEEEEEECC-TTTTSSCEEEEEEECCSTTTTTTTTTTHH-----------HHHH-----HHHHHHH
T ss_pred cc----cccCceEEEEEEEEEEc-CCCceeeEEEEEEEechHHHHHHHHHHHH-----------HHHH-----HHHHHHH
Confidence 21 22234578888999987 66664 58999999999999997776321 1111 1123455
Q ss_pred eccccccccCCCC-----cc----cccccccccHHHHHHHHhhhhhHhhhhhccccc
Q 023651 174 DLDRVLALDSDDT-----GL----EIEDSCEASDLEKRKAATAIDNILSVLTHYSQL 221 (279)
Q Consensus 174 ~~~~~l~~~~~~~-----~~----~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~s~~ 221 (279)
.++|++++||+.. .+ ............+...+.++..++++++++++.
T Consensus 138 ~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~ 194 (349)
T 3a0r_A 138 RVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKE 194 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7899999999651 11 111112233344667888999999999999974
No 33
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=99.64 E-value=4.9e-15 Score=105.91 Aligned_cols=109 Identities=10% Similarity=0.109 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEE
Q 023651 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (279)
Q Consensus 15 ~~~~~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (279)
+..+.++.++++++++++++|.+ |+|+++|+++++++||++++++|+++..+.+...... ...+..+..+..
T Consensus 10 ~~~~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 81 (118)
T 3olo_A 10 LEFKFAHYLINNAVEASFCLGDN---WQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHD-----WEEIRQKNNYTF 81 (118)
T ss_dssp HHHHHHHHHHHHCSSEEEEECTT---SBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSC-----HHHHHHHSEEEE
T ss_pred HHHHHHHHHHhcCCceEEEECCC---CcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHH-----HHHHHhcCcEEE
Confidence 33456788999999999999999 9999999999999999999999998777764332221 233344566778
Q ss_pred EEEEEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccc
Q 023651 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (279)
Q Consensus 95 e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DIT 134 (279)
+....+++|..+|+.++..|+.. +|. .+++++++|||
T Consensus 82 e~~~~~~~g~~~~~~~~~~~~~~--~~~-~~~~~~~~DIT 118 (118)
T 3olo_A 82 KTRYRSQSGRIFLVEMSLTFLED--QER-RFSCVFVREKS 118 (118)
T ss_dssp EEEEECTTCCEEEEEEEEEEEEE--TTE-EEEEEEEEEC-
T ss_pred EEEEEccCCCEEEEEEEEEEEEE--CCc-cEEEEEEEeCC
Confidence 88889999999999999999976 443 46789999997
No 34
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.63 E-value=8.4e-16 Score=111.18 Aligned_cols=117 Identities=12% Similarity=0.116 Sum_probs=87.6
Q ss_pred HHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEEEEEEEc
Q 023651 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYK 100 (279)
Q Consensus 21 ~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 100 (279)
+.++++++++++++|.+ |.|+++|+++++++|++.++++|+++..+.++.........+......+.. ..++...+
T Consensus 2 ~~l~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 77 (126)
T 3mjq_A 2 KNFLETIEDMILIINRE---GRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKE-SLPLSLEK 77 (126)
T ss_dssp CTTGGGCSSEEEEEETT---SBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCS-EEEEEEEC
T ss_pred hhHHhhCCceEEEEeCC---CcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCCc-eeEEEEEc
Confidence 45789999999999999 999999999999999999999999877777666655555555555544444 67788889
Q ss_pred CCCceEEEEEEEEEeeecCCCcEEEEEEEEeccchhHHHHhccc
Q 023651 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGM 144 (279)
Q Consensus 101 ~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk~~e~~l~ 144 (279)
++|..+|+.+...|... +...+++++++|||++|+++++..
T Consensus 78 ~~g~~~~~~~~~~~~~~---~~~~~~~~~~~DITe~k~a~~~~~ 118 (126)
T 3mjq_A 78 KEGTSIPAKARIWQGKW---HNEPCLFAIIKDLSKEERASSPPF 118 (126)
T ss_dssp TTSCEEEEEEEEEEEES---SSSEEEEEEEEECC----------
T ss_pred cCCCEEEEEEEEEeeeE---CCceEEEEEEEechHHHHhhcccc
Confidence 99999999999887754 335689999999999999988763
No 35
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=99.62 E-value=1.9e-14 Score=104.93 Aligned_cols=114 Identities=26% Similarity=0.501 Sum_probs=98.1
Q ss_pred HHHHHHhhCCCEEEEEcC---CCCCCcEEecchHHHHHhCCCcchhcCCC--CCCCCCCCCCHHHHHHHHHHHHhCCCeE
Q 023651 19 WVHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPIE 93 (279)
Q Consensus 19 ~~~~~l~~~~~~i~~~d~---~~~~g~i~~~N~~~~~l~G~~~~e~~G~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (279)
.+...+++++++++++|. + |.|+++|+++++++|++.++++|++ +..+.++.........+...+..+..+.
T Consensus 20 ~~~~~~~~~~~~i~~~d~~~~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (138)
T 2l0w_A 20 TIIRKFEGQSRKFIIANARVEN---CAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEERK 96 (138)
T ss_dssp HHHHHHTTTTSEEEEEESSSTT---CBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCEE
T ss_pred HHHHHHhcCCCCEEEEecCCCC---CEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCce
Confidence 455667789999999999 8 9999999999999999999999998 5656666666666666677777777788
Q ss_pred EEEEEEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccchh
Q 023651 94 VNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (279)
Q Consensus 94 ~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITer 136 (279)
.+....+++|..+|+.+...|+.+ .+|.+.+++++++|||++
T Consensus 97 ~~~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~ 138 (138)
T 2l0w_A 97 VEIAFYRKDGSCFLCLVDVVPVKN-EDGAVIMFILNFEVVMEK 138 (138)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEEEEEC
T ss_pred eEEEEECCCCCEEEEEEEEEEEeC-CCCCEEEEEEEEEeccCC
Confidence 888888999999999999999998 789999999999999975
No 36
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.62 E-value=2.9e-15 Score=113.75 Aligned_cols=124 Identities=19% Similarity=0.237 Sum_probs=85.5
Q ss_pred HHHHHHHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCC---
Q 023651 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP--- 91 (279)
Q Consensus 15 ~~~~~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~--- 91 (279)
+.+++++.++++++++++++|.+ |.++++|+++++++|++.++++|+++..++++.........+......+..
T Consensus 37 ~~~~~~~~~l~~~~~~i~~~d~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (167)
T 1v9y_A 37 AADGIFFPALEQNMMGAVLINEN---DEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVE 113 (167)
T ss_dssp ---CCHHHHHHTCSSEEEEECTT---SBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC-------
T ss_pred hhhHHHHHHHHhCCCCEEEECCC---CcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHhhcCCCccc
Confidence 44567899999999999999999 999999999999999999999999887777655544444444444433322
Q ss_pred -eEEEEEEEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccchhHHHHhccc
Q 023651 92 -IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGM 144 (279)
Q Consensus 92 -~~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk~~e~~l~ 144 (279)
+..+.....++|..+|+.+...|+. .+|.+ +++++++|||++|++++++.
T Consensus 114 ~~~~~~~~~~~~g~~~~~~~~~~~~~--~~g~~-~~~~~~~DiT~~~~~e~~l~ 164 (167)
T 1v9y_A 114 GMSRELQLEKKDGSKIWTRFALSKVS--AEGKV-YYLALVRDASVEMAQKEQTR 164 (167)
T ss_dssp ---CEEEEECTTSCEEEEEEEEEEEE--ETTEE-EEEEEEEC------------
T ss_pred ccceEEEEEcCCCcEEEEEEEEEEEe--cCCCE-EEEEEEecCcHHHHHHHHHH
Confidence 3446777889999999999999995 46766 48999999999999987763
No 37
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=99.62 E-value=2.6e-14 Score=99.62 Aligned_cols=107 Identities=27% Similarity=0.520 Sum_probs=90.5
Q ss_pred CEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCC--CCCCCCCCCCHHHHHHHHHHHHhCCCeEEEEEEEcCCCceE
Q 023651 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (279)
Q Consensus 29 ~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~ 106 (279)
.+++++|...++|.|+++|+++++++|++.++++|++ ...+.++.........+...+..+..+..+....+++|..+
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCF 81 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEE
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEE
Confidence 5788888743349999999999999999999999998 45555555566666677777778888888888889999999
Q ss_pred EEEEEEEEeeecCCCcEEEEEEEEeccchh
Q 023651 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (279)
Q Consensus 107 ~~~~~~~pi~~~~~g~~~~~v~~~~DITer 136 (279)
|+.+...|+.+ .+|.+.+++++++|||++
T Consensus 82 ~~~~~~~~~~~-~~g~~~~~~~~~~DiTe~ 110 (110)
T 1byw_A 82 LCLVDVVPVKN-EDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp EEEEEEEEEEC-TTCCEEEEEEEEEEEEEC
T ss_pred EEEEEEEEeec-CCCCEEEEEEEEEeccCC
Confidence 99999999998 789999999999999975
No 38
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.60 E-value=4.2e-15 Score=106.56 Aligned_cols=116 Identities=9% Similarity=0.060 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCC--CCCCCCCCCCHHHHHHHHHHHHhCCCe
Q 023651 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPI 92 (279)
Q Consensus 15 ~~~~~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (279)
+.+++++.+++++++++|++|.+ +|.++++|+++++++|+++++++|.. +..+.++++.......+.. ...+..+
T Consensus 8 ~~~~~~~~~~~~~~~~i~~~d~~--~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 84 (125)
T 3eeh_A 8 KSERRVRELTEATNDILWEFTAD--LSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQS-LMDGESA 84 (125)
T ss_dssp --CHHHHHHHSCCCCEEEEEETT--SSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHH-HHTTCCE
T ss_pred HHHHHHHHHHhcCCceEEEEEcC--CCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHH-HHcCCCc
Confidence 55678999999999999999975 37999999999999999999999876 3444444444444444433 5567778
Q ss_pred EEEEEEEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccc
Q 023651 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (279)
Q Consensus 93 ~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DIT 134 (279)
..++...+++|..+|+.+...|+.+ .+|.+.+++++++|||
T Consensus 85 ~~e~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 85 DVECRVNATEEYQRWVWIQGEPITN-DAGETVRVAGFARDIT 125 (125)
T ss_dssp EEEEEECGGGTTCEEEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred cEEEEEEcCCCCEEEEEEecEEEEC-CCCCEEEEEEEEEecC
Confidence 8888888999999999999999998 8999999999999997
No 39
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=99.60 E-value=3.3e-16 Score=144.71 Aligned_cols=117 Identities=14% Similarity=0.104 Sum_probs=104.2
Q ss_pred HHHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEEEEEE
Q 023651 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLN 98 (279)
Q Consensus 19 ~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 98 (279)
++..++++++++|+++|.+ |+|.|||++|++++||+.++.+|++.....++++.. ....+.+.+..++.+.++++.
T Consensus 519 ~~~~lle~a~~~i~~~D~~---grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~-~~~~i~~~l~~g~~~~~E~~~ 594 (635)
T 4eho_A 519 QASSQVHASMQPVLITDAE---GRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESND-FLRNVAELIDHGRGWRGEVLL 594 (635)
T ss_dssp SHHHHHHHCSSCCEEEETT---CCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTH-HHHHHHHHHHHCCCBCCCCEE
T ss_pred HHHHHHHhCCCcEEEECCC---CeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHH-HHHHHHHHHHcCCcEEEEEEE
Confidence 5677899999999999999 999999999999999999999999866666555544 455667788888889999999
Q ss_pred EcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccchhHHHH
Q 023651 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140 (279)
Q Consensus 99 ~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk~~e 140 (279)
+++||+.+|+.++..|+++ .+|.++|++++++|||+||++|
T Consensus 595 ~~~dG~~~~~~~~~~pv~d-~~G~v~g~v~i~~DITerK~aE 635 (635)
T 4eho_A 595 RGAGNRPLPLAVRADPVTR-TEDQSLGFVLIFSDATDRRTAD 635 (635)
T ss_dssp CCSSSSCEECCCCEEEECS-TTSSCCEEEECCCCCSSSCCCC
T ss_pred EccCCcEEEEEEEEEEEEC-CCCCEEEEEEEEEeCchHhhCC
Confidence 9999999999999999999 8999999999999999999864
No 40
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=99.59 E-value=1.9e-14 Score=116.84 Aligned_cols=113 Identities=14% Similarity=0.181 Sum_probs=89.3
Q ss_pred HHHHHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHh------------CCCcchhcCCCCCCCCCCCCCHHHHHHHHH
Q 023651 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMS------------GFSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84 (279)
Q Consensus 17 ~~~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~------------G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~ 84 (279)
..++..++++++++|+++|.+ |+|+|+|+++++++ ||++++++|+++..+++. +.....++.
T Consensus 21 ~~~l~~iLd~~~~~vii~D~~---g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~~---~~~~~~~~~ 94 (233)
T 3vol_A 21 MARIKSALDNVSANVMIADND---LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN---PAHQRHLLA 94 (233)
T ss_dssp HHHHHHHHTTSSSEEEEEETT---SBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSSS---HHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEECCC---CcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcCC---HHHHHHHHH
Confidence 457889999999999999999 99999999999998 899999999998777642 222222222
Q ss_pred HHHhCCCeEEEEEEEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccchhHHHHhcc
Q 023651 85 AIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (279)
Q Consensus 85 ~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk~~e~~l 143 (279)
.. ...+..++. .+| .|+.++..|+.+ ++|.+.|++++++|||+++++|+++
T Consensus 95 ~~--~~~~~~~~~---~~g--~~~~~~~~Pi~d-~~G~~~g~v~~~~DITe~~~~e~ei 145 (233)
T 3vol_A 95 NL--TGVHKAELN---LGG--RRFSLDVVPVFN-DANERLGSAVQWTDRTEEHRAEQEV 145 (233)
T ss_dssp TC--CSCEEEEEE---ETT--EEEEEEEEEEEC-TTCCEEEEEEEEEECHHHHHHHHHH
T ss_pred hc--ccceeEEEE---ECC--EEEEEEEEEEEC-CCCCEEEEEEEEehhhHHHHHHHHH
Confidence 22 123443332 345 377899999998 8999999999999999999998877
No 41
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=99.55 E-value=1e-13 Score=103.60 Aligned_cols=106 Identities=34% Similarity=0.562 Sum_probs=92.1
Q ss_pred HHHhhCCCEEEEEc---CCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCC-----------CHHHHHHHHHHHH
Q 023651 22 EALDELPDSFTITD---PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT-----------NRRTIMEIREAIR 87 (279)
Q Consensus 22 ~~l~~~~~~i~~~d---~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~-----------~~~~~~~~~~~~~ 87 (279)
.++++. ++++++| .+ |+|+++|+++++++||++++++|+++..+.+++. .......+...+.
T Consensus 30 ~~~~~~-~~i~~~d~~d~~---g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (149)
T 3d72_A 30 GPVDTS-VALILCDLKQKD---TPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAID 105 (149)
T ss_dssp CSCCTT-SCEEEEETTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHH
T ss_pred HhhcCC-ccEEEEeccCCC---CcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHH
Confidence 455664 8999999 68 9999999999999999999999999877776653 5666667777888
Q ss_pred hCCCeEEEEEEEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEec
Q 023651 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132 (279)
Q Consensus 88 ~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~D 132 (279)
.+..+..++...+++|..+|+.++..|+.+ .+|.+.+++++++|
T Consensus 106 ~~~~~~~e~~~~~~dG~~~~~~~~~~~i~~-~~g~~~~~v~~~~D 149 (149)
T 3d72_A 106 RNAEVQVEVVNFKKNGQRFVNFLTMIPVRD-ETGEYRYSMGFQCE 149 (149)
T ss_dssp HTCCEEEEEEEECTTCCEEEEEEEEEEEEC-TTSSEEEEEEECCC
T ss_pred CCCceEEEEEEECCCCCEEEEEEEEEEEEc-CCCCEEEEEEEEeC
Confidence 888888899899999999999999999998 89999999998876
No 42
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=99.54 E-value=3.4e-14 Score=104.55 Aligned_cols=111 Identities=11% Similarity=0.068 Sum_probs=83.0
Q ss_pred HHHHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCC-------
Q 023651 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER------- 90 (279)
Q Consensus 18 ~~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~------- 90 (279)
+.++.++++++++|+++|.+ |+|+++|+++++++||++++++|+++..++++.........+......+.
T Consensus 7 ~~l~~i~~~~~d~i~~~D~~---g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (129)
T 3mfx_A 7 ETIELFIQHLTEAMILVNAN---GFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPVQ 83 (129)
T ss_dssp HHHHHHHTTCSSEEEEEETT---SBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCSC
T ss_pred HHHHHHHhcCCceEEEECCC---CEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHHHHHHhcCcccccccC
Confidence 46888999999999999999 99999999999999999999999998888776654432211111111111
Q ss_pred CeEEEEEEEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccch
Q 023651 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (279)
Q Consensus 91 ~~~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITe 135 (279)
.+..++...++||+.+|++++++|+.+ ++. .++++++|+..
T Consensus 84 ~~~~E~~~~rkdG~~~~velsis~i~~--~~~--~~v~~~~~~~~ 124 (129)
T 3mfx_A 84 HPAQETTLICASGKAKDVELSISYIPG--HEP--MFVMVMHDLEH 124 (129)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEECS--SSC--EEEEEEEEC--
T ss_pred CCceEEEEEcCCCCEEEEEEEEEEecC--CCc--EEEEEEechhh
Confidence 234688889999999999999999964 222 47888888753
No 43
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=99.52 E-value=1.1e-14 Score=105.18 Aligned_cols=108 Identities=10% Similarity=0.081 Sum_probs=75.2
Q ss_pred HHHHHHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEEE
Q 023651 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (279)
Q Consensus 16 ~~~~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (279)
.+++++.++++++++++++|.+ |+|+++|+++++++|+++++++|+++..+++++...............+...
T Consensus 17 ~~~~~~~i~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 90 (125)
T 3fc7_A 17 TRKKFESLVSDSPDGIVHLTTN---GTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKSAVENGTAT--- 90 (125)
T ss_dssp ---------CCSCCEEEEEETT---SBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHHHHHHHHHHTSCE---
T ss_pred HHHHHHHHHhcCCCeEEEEcCC---CeEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHHHHHHHHHHhcCCCeE---
Confidence 5678999999999999999999 9999999999999999999999999877763222222222223444444433
Q ss_pred EEEEcCCCc-eEEEEEEEEEeeecCCCcEEEEEEEEeccc
Q 023651 96 LLNYKKDGT-PFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (279)
Q Consensus 96 ~~~~~~dG~-~~~~~~~~~pi~~~~~g~~~~~v~~~~DIT 134 (279)
..++|. .+|+.+...|+.+ +|...+++++++|||
T Consensus 91 ---~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 91 ---RSEDAVGGRHYHNQYIPVDS--HRKSDTFQLVSRDIT 125 (125)
T ss_dssp ---EEEEEETTEEEEEEEEESST--TTTTTEEEEEEEECC
T ss_pred ---EeEcCCCcEEEEEEEEeEec--CCCeEEEEEEEecCC
Confidence 223455 7899999999875 577789999999998
No 44
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=99.48 E-value=2.9e-13 Score=102.31 Aligned_cols=119 Identities=13% Similarity=0.109 Sum_probs=93.0
Q ss_pred HHHHHHHhhCCCEEEEEcCCCCCCcEEecchH---HHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEE
Q 023651 18 LWVHEALDELPDSFTITDPSISGHPIVFASRG---FLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (279)
Q Consensus 18 ~~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~---~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (279)
+.+..++++++++|+++|.+ |+|+|+|++ +++++| ..++++|+++..++++. .......+...++.+.....
T Consensus 19 ~~l~~IL~~~~~gI~~vD~~---g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~~~~~~-~~~~v~~i~~~l~~g~~~~~ 93 (151)
T 2qkp_A 19 EQANLILNHLPLEITFVNKD---DIFQYYNDSVPAAEMVFK-RTPSQVGRNVELCHPPK-VLDKVKKVFELLRNGQRDKV 93 (151)
T ss_dssp HHHHHHHHHSSSEEEEEETT---SBEEEECCCSCGGGCSSC-CCGGGTTSBGGGSSCHH-HHHHHHHHHHHHHTTSBSEE
T ss_pred HHHHHHHHhCCCceEEEcCC---CeEEEEeCCCchhhhhcC-CCHHHcCCCHHHhCCHH-HHHHHHHHHHHHHcCCccEE
Confidence 46889999999999999999 999999999 999999 56789999987765422 22233445666777777666
Q ss_pred EEEEEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccchhHHHHhcc
Q 023651 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (279)
Q Consensus 95 e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk~~e~~l 143 (279)
+++....+ ...++.++..|+++ ++|.+.|++.+++|||+.++.+++.
T Consensus 94 ~~~~~~~~-~~~~v~v~~~Pi~d-~~G~~~G~vev~~Dit~l~~le~~r 140 (151)
T 2qkp_A 94 NMWFQSER-LGKFVYVTYAAVRD-QAGDFQGVLEYVQDIKPFFELDSEF 140 (151)
T ss_dssp EEEEEETT-TTEEEEEEEEEEEC-TTCCEEEEEEEEEECGGGGGGGGC-
T ss_pred EEEEecCC-CCeEEEEEEEEEEC-CCCCEEEEEEEEEECHHHHhhhhhh
Confidence 66653332 12467888999998 7899999999999999999886654
No 45
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.47 E-value=9.3e-14 Score=120.06 Aligned_cols=108 Identities=8% Similarity=0.097 Sum_probs=96.0
Q ss_pred CEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEEEEEEEcCCCceEEE
Q 023651 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWM 108 (279)
Q Consensus 29 ~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~ 108 (279)
..++..+.+ |.++|+|++++.++||+++|++|+++..+++|++.+.....+...+..+.....++++++++|..+|+
T Consensus 252 ~f~~~~~~d---g~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~~~kdG~~vWv 328 (361)
T 4f3l_A 252 EFTSRHSLE---WKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWL 328 (361)
T ss_dssp EEEEEECTT---SBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHHHHHHHSEEECCCEEEECTTSEEEEE
T ss_pred eeEEEEcCC---ceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHHHHHhCCCcceEEEEEEecCCCEEEE
Confidence 455667788 99999999999999999999999998889988888877777788887777667789999999999999
Q ss_pred EEEEEEeeecC-CCcEEEEEEEEeccchhHHHH
Q 023651 109 LFKMSLVFGKE-DGRATHFVAVQVPIVSRKHMR 140 (279)
Q Consensus 109 ~~~~~pi~~~~-~g~~~~~v~~~~DITerk~~e 140 (279)
.....|+.+ . +|.+.+++|+.+|||+++..+
T Consensus 329 ~~~~~~v~~-~~~g~~~~iv~~~~dITe~~~~~ 360 (361)
T 4f3l_A 329 QTHYYITYH-QWNSRPEFIVCTHTVVSYAEVRA 360 (361)
T ss_dssp EEEEEEEEC-TTTCCEEEEEEEEEECCHHHHHH
T ss_pred EEEEEEEEc-CCCCCeeEEEEEEEECChhHhhc
Confidence 999999998 6 799999999999999998764
No 46
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=99.47 E-value=9e-13 Score=95.46 Aligned_cols=105 Identities=16% Similarity=0.223 Sum_probs=78.6
Q ss_pred HHHHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhC------------CCcchhcCCCCCCCCCCCCCHHHHHHHHHH
Q 023651 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSG------------FSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85 (279)
Q Consensus 18 ~~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G------------~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~ 85 (279)
.+++.++++++++|+++|.+ |+|+|+|+++++++| |++++++|++...+++. +.....+...
T Consensus 5 ~rl~~il~~~~~gviv~D~~---g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~~---~~~~~~~~~~ 78 (121)
T 4hi4_A 5 ARIASALDNVSANVMIADND---LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN---PAHQRHLLAN 78 (121)
T ss_dssp HHHHHHHTTSSSEEEEEETT---CBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCSS---HHHHHHHHHH
T ss_pred HHHHHHHhcCCccEEEEcCC---CeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcCC---HHHHHHHHhC
Confidence 47899999999999999999 999999999999995 89999999997776532 2222222222
Q ss_pred HHhCCCeEEEEEEEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccchh
Q 023651 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (279)
Q Consensus 86 ~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITer 136 (279)
. ...+..++. .+|. ++.++..|+.+ .+|.+.|++++++|||++
T Consensus 79 ~--~~~~~~~~~---~~~~--~~~~~~~pi~~-~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 79 L--TGVHKAELN---LGGR--RFSLDVVPVFN-DANARLGSAVQWTDRTEE 121 (121)
T ss_dssp C--SSCEEEEEE---ETTE--EEEEEEEEEEC-TTSCEEEEEEEEEECC--
T ss_pred c--CCCcEEEEE---ECCE--EEEEEEEEEEC-CCCCEEEEEEEEEEecCC
Confidence 1 133333332 2443 56788999998 799999999999999974
No 47
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=99.44 E-value=6e-14 Score=101.25 Aligned_cols=109 Identities=13% Similarity=0.053 Sum_probs=84.8
Q ss_pred HHHHHHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEEE
Q 023651 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (279)
Q Consensus 16 ~~~~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (279)
.....+.++++++++|+++|.+ |+|+++|+++++++|+++++++|+++..++++.........+..++..+.+...+
T Consensus 10 ~~~~~~~il~~~~~~i~~~D~~---g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (118)
T 3fg8_A 10 HSSGRENLYFQGGLGFMALDED---LRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGREQQTR 86 (118)
T ss_dssp ---CCCCSSSCTTCEEEEECTT---CBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCCCEEEE
T ss_pred ccchHHHHHhhCCceEEEECCC---CeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHHHcCCceEEE
Confidence 3456678899999999999999 9999999999999999999999999777776555555666777788888887764
Q ss_pred EEEEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccchh
Q 023651 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (279)
Q Consensus 96 ~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITer 136 (279)
+.....+| .|+.+...|+. +| ++++++|||++
T Consensus 87 ~~~~~~~g--~~~~~~~~p~~---~g----~v~~~~DITer 118 (118)
T 3fg8_A 87 VDSLYSPG--MTIEVTAAADS---GA----LVVHFRDVTAE 118 (118)
T ss_dssp EECSSSTT--CEEEEEEEEET---TE----EEEEEEECSCC
T ss_pred EEEEcCCC--eEEEEEEEEcC---Cc----EEEEEEeccCC
Confidence 33333355 57888888874 33 78899999985
No 48
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.44 E-value=2.9e-13 Score=117.92 Aligned_cols=106 Identities=8% Similarity=0.041 Sum_probs=88.3
Q ss_pred CEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCC-eEEEEEEEcCCCceEE
Q 023651 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP-IEVNLLNYKKDGTPFW 107 (279)
Q Consensus 29 ~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~dG~~~~ 107 (279)
+.++..|.+ |.++|+|+++..++||+++|++|+++..+++|++.+.....+...+..++. ...++++++++|..+|
T Consensus 279 ~fi~~~~~d---g~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~vW 355 (387)
T 4f3l_B 279 EYVSRHAID---GKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFIT 355 (387)
T ss_dssp EEEEEECTT---SBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEEE
T ss_pred eEEEEECCC---CEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEEE
Confidence 356667788 999999999999999999999999988888888877777776666655554 3468999999999999
Q ss_pred EEEEEEEeeecC-CCcEEEEEEEEeccchhHH
Q 023651 108 MLFKMSLVFGKE-DGRATHFVAVQVPIVSRKH 138 (279)
Q Consensus 108 ~~~~~~pi~~~~-~g~~~~~v~~~~DITerk~ 138 (279)
+.....++.+ . +|.+.+++|+.+|||+||.
T Consensus 356 v~~~~~~~~~-~~~g~~~~ivg~~~dIT~Rk~ 386 (387)
T 4f3l_B 356 LRSRWFSFMN-PWTKEVEYIVSTNTVVLANVL 386 (387)
T ss_dssp EEEEEEEEEE-TTTTEEEEEEEEEEECC----
T ss_pred EEEEEEEEEC-CCCCCEEEEEEEEEEcchhhc
Confidence 9999999998 5 7899999999999999984
No 49
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=99.41 E-value=5.2e-13 Score=95.51 Aligned_cols=93 Identities=17% Similarity=0.165 Sum_probs=68.7
Q ss_pred HHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEEEEEEEcC
Q 023651 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKK 101 (279)
Q Consensus 22 ~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 101 (279)
.++++++++|+++|.+ |+|+|+|+++++++||+++|++|+++..+.+|++.+.....+. ........+++.+++
T Consensus 3 ~lle~~~d~i~v~d~~---G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~---~~~~~~~~e~r~~~k 76 (111)
T 2vlg_A 3 FPLQTKTDIHAVLASN---GRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFY---NEHHLMPCTFRFIKK 76 (111)
T ss_dssp ------CCEEEEECTT---SBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHH---CSCCSSCEEEEEECT
T ss_pred chhhcCCCEEEEEcCC---CeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHh---ccCCCccEEEEEEcC
Confidence 4788999999999999 9999999999999999999999999888888877665443321 223334567888999
Q ss_pred CCceEEEEEEEEEeeecCCC
Q 023651 102 DGTPFWMLFKMSLVFGKEDG 121 (279)
Q Consensus 102 dG~~~~~~~~~~pi~~~~~g 121 (279)
||+.+|++.++.++.+ ..+
T Consensus 77 dG~~~wve~~~~~v~~-~~~ 95 (111)
T 2vlg_A 77 DHTIVWVEAAVEIVTT-RAE 95 (111)
T ss_dssp TSCEEEEEEEEEEC------
T ss_pred CCCEEEEEEEEEEEec-ccC
Confidence 9999999999999987 443
No 50
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.37 E-value=5.5e-12 Score=89.81 Aligned_cols=106 Identities=12% Similarity=0.122 Sum_probs=81.0
Q ss_pred HHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCe-EEEEEE
Q 023651 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI-EVNLLN 98 (279)
Q Consensus 20 ~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~ 98 (279)
...++++++++++++|.+ |+|+++|+++++++|++.++++|+++..++++... ....+...+..+.+. ..+...
T Consensus 9 ~~~il~~~~~~i~~~D~~---g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 83 (115)
T 3b33_A 9 PSAILNNMVTATLILDDG---LAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASL--DLALLTQPLQSGQSITDSDVTF 83 (115)
T ss_dssp HHHHHHHCSSEEEEECTT---CBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEEC--CTHHHHHHHHHCCCEEEEEEEE
T ss_pred HHHHHhhcCceEEEECCC---CcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccch--hhHHHHHHHHcCCcccCCceEE
Confidence 456899999999999999 99999999999999999999999986655443211 112334455566554 345555
Q ss_pred EcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccc
Q 023651 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (279)
Q Consensus 99 ~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DIT 134 (279)
. ++|..+|+.++..|+.+ +|. .+++.+++||+
T Consensus 84 ~-~~g~~~~~~~~~~pi~~--~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 84 V-VDGRPLMLEVTVSPITW--QRQ-LMLLVEMRKID 115 (115)
T ss_dssp E-ETTEEEEEEEEEEEEEE--TTE-EEEEEEEEEC-
T ss_pred e-cCCCEEEEEEEEEEeec--CCc-eEEEEEEEeCC
Confidence 5 78999999999999976 565 68899999985
No 51
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=99.31 E-value=1.2e-11 Score=106.93 Aligned_cols=116 Identities=18% Similarity=0.273 Sum_probs=93.9
Q ss_pred HHHHHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 023651 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNL 96 (279)
Q Consensus 17 ~~~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 96 (279)
.+.+..+++++++||+++|.+ |+|+|+|++ ++++ ++.++++|+++..++++. .......+..++..+.....+.
T Consensus 238 ~~~l~~IL~~l~dgIivvD~~---g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~-~~~~~~~l~~~l~~g~~~~~~~ 311 (369)
T 3cax_A 238 IEELKAIFEALPVDVTFIDKD---DRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPK-SVYVVNKILKAFKEGRKKEATF 311 (369)
T ss_dssp HHHHHHHHHHSSSEEEEECTT---SBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGG-GHHHHHHHHHHHHHTSCSCEEE
T ss_pred HHHHHHHHHhCCCcEEEECCC---CcEEEEcCH-HHcc-CChHHHcCCcHHHHCChh-hHHHHHHHHHHHHcCCceEEEE
Confidence 357889999999999999999 999999999 9999 899999999988776532 2333445566777777665555
Q ss_pred EEEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccchhHHHHhc
Q 023651 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142 (279)
Q Consensus 97 ~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk~~e~~ 142 (279)
+.. .+| .++.++..|+++ .+|.+.|++.+++|||+.++.+++
T Consensus 312 ~~~-~~g--~~v~v~~~PI~d-~~G~~~G~v~v~~DITe~~~le~~ 353 (369)
T 3cax_A 312 WLR-LRE--KYVYIKYVPLFN-EKGEYIGTLEMTMDIAPYKKIEGE 353 (369)
T ss_dssp EEE-ETT--EEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHTCCSC
T ss_pred EEe-eCC--EEEEEEEEEEEC-CCCCEEEEEEEEEcCHHHHHHHHH
Confidence 443 345 578889999998 899999999999999999988554
No 52
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=99.20 E-value=1.2e-11 Score=88.08 Aligned_cols=103 Identities=16% Similarity=0.157 Sum_probs=73.9
Q ss_pred hCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHH-HHh-CCCe---EEEEEEEc
Q 023651 26 ELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA-IRE-ERPI---EVNLLNYK 100 (279)
Q Consensus 26 ~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~-~~~-~~~~---~~e~~~~~ 100 (279)
+.+++|+++|.+ +|+|+++|+++++++||++++++|+++..++++..... ...+... ... +... ..++...+
T Consensus 6 ~~~~~i~~~d~~--~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (114)
T 1ll8_A 6 EFNKAIFTVDAK--TTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDV-VEALSEEHMEADGHAAVVFGTVVDIIS 82 (114)
T ss_dssp TTTCEEEEEETT--TCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHH-HHHTTSSTTSSSSCSSCCCSSSEEECC
T ss_pred CCCceEEEEECC--CCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHH-HHHHHHHhhccCCcceeccCcEEEEEe
Confidence 355799999973 28999999999999999999999999888777654332 2222111 111 1111 23466778
Q ss_pred CCCceEEEEEEEEEeeecCCCcEEEEEEEEeccc
Q 023651 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (279)
Q Consensus 101 ~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DIT 134 (279)
++|..+|+.++..|+.+ ..+ .+++++++|++
T Consensus 83 ~dG~~~~v~~~~~~~~~-~~~--~~~v~~~~~~~ 113 (114)
T 1ll8_A 83 RSGEKIPVSVWMKRMRQ-ERR--LCCVVVLEPVE 113 (114)
T ss_dssp TTCCCEEEECCEECCBS-SSS--BEEEEEEEECC
T ss_pred cCCCEEEEEEEEEeecc-CCc--cEEEEEEeecC
Confidence 99999999999999976 333 36788888875
No 53
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=99.19 E-value=3.7e-10 Score=76.22 Aligned_cols=95 Identities=8% Similarity=0.076 Sum_probs=71.5
Q ss_pred CCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEEEEEEEcCCCceE
Q 023651 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (279)
Q Consensus 27 ~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~ 106 (279)
++++++++|.+ |+|+++|+++++++|++.++++|+++..+ +. .......+......+...... . .+|...
T Consensus 1 ~~~~i~~~d~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~ 70 (96)
T 3a0s_A 1 METAIITLSKD---GRITEWNKKAEQLFGLKKENVLGRRLKDL--PD-FEEIGSVAESVFENKEPVFLN--F--YKFGER 70 (96)
T ss_dssp CCCEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGS--TT-CHHHHHHHHHHHHHTCCEEEE--E--EEETTE
T ss_pred CCceEEEEcCC---CCEeehhHHHHHHhCCCHHHhcCCCHHHC--cc-hHHHHHHHHHHhccCCeEEEE--E--EcCCcE
Confidence 47899999999 99999999999999999999999987766 22 334444555566666655322 2 234557
Q ss_pred EEEEEEEEeeecCCCc-EEEEEEEEec
Q 023651 107 WMLFKMSLVFGKEDGR-ATHFVAVQVP 132 (279)
Q Consensus 107 ~~~~~~~pi~~~~~g~-~~~~v~~~~D 132 (279)
|+.++..|+.+ .+|. +.|++++++|
T Consensus 71 ~~~~~~~p~~~-~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 71 YFNIRFSPFRN-AKTQLLEGVIITIDD 96 (96)
T ss_dssp EEEEEEEEEEC-TTTCCEEEEEEEEEC
T ss_pred EEEEEEEEeEc-CCCCeeeEEEEEecC
Confidence 89999999987 6554 6789988876
No 54
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=99.18 E-value=9.6e-12 Score=88.36 Aligned_cols=104 Identities=9% Similarity=0.083 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCC---CcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCC
Q 023651 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGF---SRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91 (279)
Q Consensus 15 ~~~~~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~---~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (279)
+..+.++.++++++++++++|.+ |+|+++|+++++++|| +.++++|+++..+.++.. +...+..+..
T Consensus 12 ~~~~~~~~il~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~ 81 (118)
T 2w0n_A 12 TLFEQRQAMLQSIKEGVVAVDDR---GEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVD-------VSEVLRDGTP 81 (118)
T ss_dssp TTHHHHHHHHHCCCCCCEEEBTT---TBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHH-------HHHHHHTTCC
T ss_pred HHHHHHHHHHhhccccEEEECCC---CcEeehhHHHHHHhCCCccChhhhhccCcccccCchh-------HHHHhccCce
Confidence 34557889999999999999999 9999999999999997 789999998777664321 3344444443
Q ss_pred eEEEEEEEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccc
Q 023651 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (279)
Q Consensus 92 ~~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DIT 134 (279)
..... ...+| .|+.+...|+.+ +|.+.|++++++|||
T Consensus 82 ~~~~~--~~~~~--~~~~~~~~p~~~--~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 82 RRDEE--ITIKD--RLLLINTVPVRS--NGVIIGAISTFRDKT 118 (118)
T ss_dssp CCCCC--EESSS--CEECCCEECCCC--SSCCCCEEECCCCCC
T ss_pred eccEE--EEECC--EEEEEeeceeee--CCEEEEEEEEEEeCC
Confidence 32211 12345 477788889875 788889999999997
No 55
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=99.14 E-value=6.1e-11 Score=92.61 Aligned_cols=107 Identities=14% Similarity=0.141 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCC--Ce
Q 023651 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER--PI 92 (279)
Q Consensus 15 ~~~~~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~ 92 (279)
+....++.+++++++|++++|.+ |+|+++|+++++++|++.++++|+++..++++... ...+..+. ..
T Consensus 77 ~~~~~l~~il~~~~~gvi~~D~~---g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~~~~ 146 (190)
T 2jhe_A 77 REHLALSALLEALPEPVLSVDMK---SKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNF-------LRWLESEPQDSH 146 (190)
T ss_dssp HHHHHHHHHHHHCSSCEEEECTT---CBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCCH-------HHHHHTCCCSCE
T ss_pred HHHHHHHHHHHhCCCcEEEEcCC---CCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCCH-------HHHHhcCCCCCc
Confidence 34467899999999999999999 99999999999999999999999998777654321 12333333 22
Q ss_pred EEEEEEEcCCCceEEEEEEEEEeeecCCCc----EEEEEEEEeccchhH
Q 023651 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGR----ATHFVAVQVPIVSRK 137 (279)
Q Consensus 93 ~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~----~~~~v~~~~DITerk 137 (279)
..++.. +|. ++.+...|+.+ .+|. +.|++++++|||+++
T Consensus 147 ~~~~~~---~g~--~~~~~~~pi~~-~~~~~~~~~~g~v~~~~DiTe~~ 189 (190)
T 2jhe_A 147 NEHVVI---NGQ--NFLMEITPVYL-QDENDQHVLTGAVVMLRSTIRMG 189 (190)
T ss_dssp EEEEEE---TTE--EEEEEEEEETT-TTEEEEEEEE-HHHHHHHHTTTC
T ss_pred ceEEEE---CCe--EEEEEEEEEEe-cCCCCcceEEeEEEEEeccchhc
Confidence 233322 664 45677889875 4555 788888999999876
No 56
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=99.14 E-value=2.2e-10 Score=97.49 Aligned_cols=107 Identities=9% Similarity=0.033 Sum_probs=90.6
Q ss_pred CCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCC-----eEEEEEEEcCC
Q 023651 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP-----IEVNLLNYKKD 102 (279)
Q Consensus 28 ~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~d 102 (279)
.+.++..+.+ |.++|+|+++..++||+++|++|+++..+++|++.+.....+...+..|.. ...++++++++
T Consensus 154 ~~fi~r~~~d---G~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~~kd 230 (339)
T 3rty_A 154 PKFAIRHTAT---GIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQN 230 (339)
T ss_dssp CEEEEEEETT---CBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEEECTT
T ss_pred ceEEEEECCC---CeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCCcccccccceEEEEEccC
Confidence 4567788899 999999999999999999999999998999999888777777777776654 24678999999
Q ss_pred CceEEEEEEEEEeeecCCCcEEEEEEEEeccchhH
Q 023651 103 GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (279)
Q Consensus 103 G~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk 137 (279)
|..+|++....++.++..+.+..++++.+.|+...
T Consensus 231 G~~vWlet~~~~~~np~s~~~~~II~~h~vi~~p~ 265 (339)
T 3rty_A 231 GCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPK 265 (339)
T ss_dssp SCEEEEEEEEEEEECTTTCSEEEEEEEEEEEECCS
T ss_pred CCEEEEEEEEEEEECCCCCCeeEEEEEEEECCCCC
Confidence 99999999999999733567778899888887654
No 57
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=99.13 E-value=1.2e-09 Score=78.70 Aligned_cols=99 Identities=14% Similarity=0.080 Sum_probs=75.3
Q ss_pred HHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCC-CCCCCCHHHHHHHHHHHHhCCCeEEEEE-E
Q 023651 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMF-QGPRTNRRTIMEIREAIREERPIEVNLL-N 98 (279)
Q Consensus 21 ~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~ 98 (279)
..++++++.|++++|.+ |+|++||.+++++.||++++++|+++... .+......+...+.+.+..+. +..... .
T Consensus 20 ~~~ld~l~~Gii~lD~~---g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~-l~~~~~~v 95 (125)
T 1nwz_A 20 DGQLDGLAFGAIQLDGD---GNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGN-LNTMFEYT 95 (125)
T ss_dssp HHHHTTCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTC-CEEEEEEE
T ss_pred HHHHhccCceEEEECCC---CEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEE
Confidence 55799999999999999 99999999999999999999999998654 333445566677777777666 444444 4
Q ss_pred EcCCCceEEEEEEEEEeeecCCCcEEEE
Q 023651 99 YKKDGTPFWMLFKMSLVFGKEDGRATHF 126 (279)
Q Consensus 99 ~~~dG~~~~~~~~~~pi~~~~~g~~~~~ 126 (279)
.+++|.+.++.++..+ . ++|...++
T Consensus 96 ~~~~~~p~~v~i~l~~--~-~~~~~~~i 120 (125)
T 1nwz_A 96 FDYQMTPTKVKVHMKK--A-LSGDSYWV 120 (125)
T ss_dssp ECTTSCCEEEEEEEEE--C-SSSSEEEE
T ss_pred EcCCCCEEEEEEEEEE--c-CCCCEEEE
Confidence 4889997766655554 4 56766554
No 58
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=99.08 E-value=2e-09 Score=77.68 Aligned_cols=99 Identities=15% Similarity=0.068 Sum_probs=74.3
Q ss_pred HHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCC-CCCCCCHHHHHHHHHHHHhCCCeEEEEEE-
Q 023651 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMF-QGPRTNRRTIMEIREAIREERPIEVNLLN- 98 (279)
Q Consensus 21 ~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~- 98 (279)
..++++++.|++++|.+ |+|++||.+++++.||++++++|+++... .+......+...+.+.+..+. +......
T Consensus 25 ~~~ld~l~~GiivlD~d---g~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~-l~~~~~yv 100 (129)
T 1mzu_A 25 TAEFDALPVGAIQVDGS---GVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGT-LDARFDFV 100 (129)
T ss_dssp CTTGGGCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSC-CEEEEEEE
T ss_pred HHHHhccCceEEEECCC---CeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEE
Confidence 34699999999999999 99999999999999999999999998654 333445566677777777555 5444443
Q ss_pred EcCCCceEEEEEEEEEeeecCCCcEEEE
Q 023651 99 YKKDGTPFWMLFKMSLVFGKEDGRATHF 126 (279)
Q Consensus 99 ~~~dG~~~~~~~~~~pi~~~~~g~~~~~ 126 (279)
.+++|.+.++.++.. .. .+|...++
T Consensus 101 ~~~~~~p~~v~i~l~--~~-~~~~~~~i 125 (129)
T 1mzu_A 101 FDFQMAPVRVQIRMQ--NA-GVPDRYWI 125 (129)
T ss_dssp EECSSCEEEEEEEEE--EC-SSTTEEEE
T ss_pred EcCCCCEEEEEEEEE--Ec-CCCCEEEE
Confidence 488998666655554 44 56766554
No 59
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=98.99 E-value=3.9e-09 Score=88.96 Aligned_cols=104 Identities=9% Similarity=0.047 Sum_probs=86.0
Q ss_pred CEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCC---eEEEEEEEcCCCce
Q 023651 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP---IEVNLLNYKKDGTP 105 (279)
Q Consensus 29 ~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~e~~~~~~dG~~ 105 (279)
..+...+.+ |+++|+|+++..++||.++|++|+++..+++|++.+.....+...+..++. ...+++++++||..
T Consensus 175 ~Fitrh~~d---G~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~ 251 (317)
T 4dj3_A 175 IFTTTHTPG---CVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEY 251 (317)
T ss_dssp EEEEEECTT---SBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCE
T ss_pred ceEEEecCC---CeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEccCCCE
Confidence 345667788 999999999999999999999999998999999988888777777776554 34678999999999
Q ss_pred EEEEEEEEEeeecCCCcEEEEEEEEeccch
Q 023651 106 FWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (279)
Q Consensus 106 ~~~~~~~~pi~~~~~g~~~~~v~~~~DITe 135 (279)
+|++....++.++.++++..++++.+-++.
T Consensus 252 vwvet~~~~~~np~s~~~e~II~~h~v~~~ 281 (317)
T 4dj3_A 252 VILDSSWSSFVNPWSRKVSFIIGRHKVRTS 281 (317)
T ss_dssp EEEEEEEEEEECSSSCCEEEEEEEEEECCC
T ss_pred EEEEEEEEEEECCCCCcccEEEEEEEeccC
Confidence 999999999987335777777877765544
No 60
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=98.92 E-value=7.6e-09 Score=86.93 Aligned_cols=104 Identities=8% Similarity=0.037 Sum_probs=86.3
Q ss_pred EEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCC-eE-EEEEEEcCCCceEE
Q 023651 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP-IE-VNLLNYKKDGTPFW 107 (279)
Q Consensus 30 ~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~e~~~~~~dG~~~~ 107 (279)
.+...+.+ |+++|+|+++..++||.++|++|+++..+++|++.....+.+...+..++. .. .++++++++|..+|
T Consensus 167 Fitrh~~d---G~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vw 243 (309)
T 3gdi_A 167 FTTTHTPN---CLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYIT 243 (309)
T ss_dssp EEEEECTT---CBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSCEEE
T ss_pred EEEEecCC---CeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEccCCCEEE
Confidence 45667788 999999999999999999999999988888999887777777777775544 44 58999999999999
Q ss_pred EEEEEEEeeecCCCcEEEEEEEEeccchh
Q 023651 108 MLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (279)
Q Consensus 108 ~~~~~~pi~~~~~g~~~~~v~~~~DITer 136 (279)
++....++.++.++++..++++.+-++..
T Consensus 244 vet~~~~~~np~s~~~e~ii~~h~v~~gp 272 (309)
T 3gdi_A 244 LDTSWSSFINPWSRKISFIIGRHKVRVGP 272 (309)
T ss_dssp EEEEEEEEECTTTCCEEEEEEEEEEEECC
T ss_pred EEEEEEEEECCCCCcccEEEEEEEEccCC
Confidence 99999998863367888888888777653
No 61
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=98.87 E-value=6.9e-09 Score=87.56 Aligned_cols=105 Identities=10% Similarity=0.050 Sum_probs=85.6
Q ss_pred CEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhC-CCe-EEEEEEEcCCCceE
Q 023651 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE-RPI-EVNLLNYKKDGTPF 106 (279)
Q Consensus 29 ~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~-~~e~~~~~~dG~~~ 106 (279)
..+...+.+ |+++|+|+++..++||.++|++|+++..+++|++.+...+.+...+..+ ... ..++++++++|..+
T Consensus 177 ~Fitrh~~d---G~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~v 253 (320)
T 4dj2_A 177 IFTTRHTPS---CLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYV 253 (320)
T ss_dssp EEEEEECTT---CBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCEE
T ss_pred eEEEEecCC---ceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEccCCCEE
Confidence 345667788 9999999999999999999999999888999988777776666666643 344 35889999999999
Q ss_pred EEEEEEEEeeecCCCcEEEEEEEEeccchh
Q 023651 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (279)
Q Consensus 107 ~~~~~~~pi~~~~~g~~~~~v~~~~DITer 136 (279)
|++....++.++..+++..++++.+-++..
T Consensus 254 wvet~~~~~~np~s~~~e~II~~h~v~~gp 283 (320)
T 4dj2_A 254 TMDTSWAGFVHPWSRKVAFVLGRHKVRTAP 283 (320)
T ss_dssp EEECEEEEEECTTTCSEEEEEEEEEESSCC
T ss_pred EEEEEEEEEECCCCCCccEEEEEEEEccCC
Confidence 999999998873367888888888777654
No 62
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=98.16 E-value=1.7e-09 Score=90.97 Aligned_cols=110 Identities=13% Similarity=0.081 Sum_probs=76.2
Q ss_pred HhhCCCEEEEEcCCCCCCcEEecchHHHHHhC---CCcchhcCCCCCCCCCCC---CCH--HHHHHHHHHHHh-CCCeEE
Q 023651 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSG---FSRAEIIGRNGRMFQGPR---TNR--RTIMEIREAIRE-ERPIEV 94 (279)
Q Consensus 24 l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G---~~~~e~~G~~~~~l~~~~---~~~--~~~~~~~~~~~~-~~~~~~ 94 (279)
++++++||+++|.+ |+|+++|+++++++| ++ ++++|+++..+.... ... .+...+...+.. +.....
T Consensus 176 ~~~~~dGIivvD~~---G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~~ 251 (305)
T 2ykf_A 176 SPRAGDGFIRLDVD---GVVSYASPNALSAYHRMGLT-TELEGVNLIDATRPLISDPFEAHEVDEHVQDLLAGDGKGMRM 251 (305)
Confidence 45899999999999 999999999999985 44 788999877766432 100 111212223332 222222
Q ss_pred EEEEEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccchhHHHHhccc
Q 023651 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGM 144 (279)
Q Consensus 95 e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk~~e~~l~ 144 (279)
+.. .. ..++.++..|+.+ +|.+.|++.+++|||+.++.|++|.
T Consensus 252 ei~---~~--~~~l~v~~~Pi~~--~g~~~G~Vvv~rDITE~~~lE~eL~ 294 (305)
T 2ykf_A 252 EVD---AG--GATVLLRTLPLVV--AGRNVGAAILIRDVTEVKRRDRALI 294 (305)
Confidence 221 12 2466778889976 6888899999999999999988873
No 63
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.22 E-value=8.9e-06 Score=69.94 Aligned_cols=65 Identities=9% Similarity=0.109 Sum_probs=56.0
Q ss_pred HHHHHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHH
Q 023651 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84 (279)
Q Consensus 17 ~~~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~ 84 (279)
++..+.++++++..++++|.+ |.|+|+|+++..++||++++++|+++..+.+|++...+...+..
T Consensus 85 ~~~~~~~l~a~~~~i~v~~~~---G~i~yvs~~~~~~lGy~~~el~g~~~~~~ihp~D~~~~~~~l~~ 149 (361)
T 4f3l_A 85 EEFTQLMLEALDGFFLAIMTD---GSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVYKILST 149 (361)
T ss_dssp HHHHHHHHHHTTEEEEEEETT---SBEEEECTTHHHHHCCCHHHHTTSBGGGGSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhcCceEEEEcCC---ccEEEEechhhhhcCCCHHHhcCCcHHHhcCHHHHHHHHHHhcc
Confidence 345667889999999999999 99999999999999999999999999889988887766555443
No 64
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=97.80 E-value=5.5e-05 Score=64.26 Aligned_cols=48 Identities=10% Similarity=0.188 Sum_probs=40.1
Q ss_pred EEEEc-CCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHH
Q 023651 31 FTITD-PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81 (279)
Q Consensus 31 i~~~d-~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~ 81 (279)
+++++ .+ |+|+|+|+.+..++||++++++|++..++.+|++...+...
T Consensus 6 ~~vv~~~~---G~i~yvS~~~~~~LGy~~~el~G~s~~d~ihp~D~~~f~~~ 54 (339)
T 3rty_A 6 CCVISMHD---GIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQ 54 (339)
T ss_dssp EEEEETTT---CBEEEECTTHHHHHCCCTTSSTTSBGGGGBCHHHHHHHHHH
T ss_pred EEEEECCC---cEEEEEChHHHHHcCCCHHHHCCCcHHHhcCHHHHHHHHHH
Confidence 46677 58 99999999999999999999999998888887766554433
No 65
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=97.66 E-value=4.4e-05 Score=66.22 Aligned_cols=62 Identities=16% Similarity=0.241 Sum_probs=52.7
Q ss_pred HHHHHHHhhCCCEEEEEcC-CCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHH
Q 023651 18 LWVHEALDELPDSFTITDP-SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82 (279)
Q Consensus 18 ~~~~~~l~~~~~~i~~~d~-~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~ 82 (279)
+....++++++..+++++. + |+|+|+|++++.++||+++|++|+++.++++|++...+...+
T Consensus 86 ~~~~~ll~~~~gfi~v~~~~~---G~i~yvs~~~~~~lG~~~~el~g~~~~~~ihp~D~~~~~~~L 148 (387)
T 4f3l_B 86 ELKHLILRAADGFLFVVGCDR---GKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIAKVKEQL 148 (387)
T ss_dssp HHHHHHHHTCCSEEEEEETTT---CBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEEecCC---eEEEEEchhhHHHcCCCHHHHCCCcHHHhcCCCCHHHHHHHh
Confidence 3455678889998999986 5 999999999999999999999999999999988776655443
No 66
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=97.64 E-value=7.9e-05 Score=53.40 Aligned_cols=101 Identities=11% Similarity=0.095 Sum_probs=75.7
Q ss_pred EEEEEcCCCCCCcEEecchHHHHHhCCCc--chhcCCCCCCCCCCCCCH--HHHHHHHHHHHhCCCeEEEEEEEcCCCce
Q 023651 30 SFTITDPSISGHPIVFASRGFLKMSGFSR--AEIIGRNGRMFQGPRTNR--RTIMEIREAIREERPIEVNLLNYKKDGTP 105 (279)
Q Consensus 30 ~i~~~d~~~~~g~i~~~N~~~~~l~G~~~--~e~~G~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~e~~~~~~dG~~ 105 (279)
-+.-.|.+ |+|+++.....+ .+|.+ +|++|+.+.+++++++.. ...+...+++..|.....-++++.++|..
T Consensus 9 F~sRh~~d---GKf~~vDq~~~r-~~~~~g~qdLlGrsiy~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr~k~g~~ 84 (132)
T 1oj5_A 9 FMTKQDTT---GKIISIDTSSLR-AAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTM 84 (132)
T ss_dssp EEEEECTT---CCEEEEECHHHH-TTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCE
T ss_pred eEEeecCC---CcEEEEeccccc-ccccccHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHcCCccccceEEEecCCcE
Confidence 34556788 999999998874 77788 899999988888888855 66677777787777666678899999999
Q ss_pred EEEEEEEEEeeecCCCcEEEEEEEEeccc
Q 023651 106 FWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (279)
Q Consensus 106 ~~~~~~~~pi~~~~~g~~~~~v~~~~DIT 134 (279)
+|+......++++-..++..++++-.=+.
T Consensus 85 V~~qT~sk~f~np~t~e~e~Ivs~n~v~r 113 (132)
T 1oj5_A 85 LSAHTRCKLCYPQSPDMQPFIMGIHIIDR 113 (132)
T ss_dssp EEEEEEEEEECC----CCCEEEEEEEEEC
T ss_pred EEEEEEEEEecCCCCCCCCEEEEEEEEEc
Confidence 99999888887622355556666554333
No 67
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=96.74 E-value=0.00057 Score=57.48 Aligned_cols=56 Identities=13% Similarity=-0.028 Sum_probs=45.6
Q ss_pred HHhhCCCEEEEEcC-CCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHH
Q 023651 23 ALDELPDSFTITDP-SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81 (279)
Q Consensus 23 ~l~~~~~~i~~~d~-~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~ 81 (279)
+++++..-++++.. + |+|+|+|+.+..++||++++++|++..++.+|++...+...
T Consensus 31 lLqaldGF~~vvs~~~---G~i~yvS~sv~~~Lg~~~~~l~g~s~~d~iHp~D~~~f~~q 87 (320)
T 4dj2_A 31 TLRNQDTFSVAVSFLT---GRIVYISEQAGVLLRCKRDVFRGARFSELLAPQDVGVFYGS 87 (320)
T ss_dssp TTSCSSEEEEEEETTT---CBEEEECTHHHHHHTSCSTTTTTSBGGGGBCHHHHHHHHHH
T ss_pred HHhccCCEEEEEECCC---ceEEEECcHHHHHhCcCHHHHcCCcHHHhcCHHHHHHHHHh
Confidence 35666655667775 6 99999999999999999999999998888887776655543
No 68
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=96.68 E-value=0.0005 Score=57.52 Aligned_cols=57 Identities=9% Similarity=-0.047 Sum_probs=39.1
Q ss_pred HHhhCCCEEEEEcC-CCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHH
Q 023651 23 ALDELPDSFTITDP-SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82 (279)
Q Consensus 23 ~l~~~~~~i~~~d~-~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~ 82 (279)
+++++...+++++. + |+|+|+|+++..++||++++++|+++.++.+|++...+...+
T Consensus 20 ll~a~dgF~~vvs~~~---G~i~yvS~s~~~~Lg~~~~el~g~s~~d~iHp~D~~~~~~~L 77 (309)
T 3gdi_A 20 IVKNADMFAVAVSLVS---GKILYISNQVASIFHCKKDAFSDAKFVEFLAPHDVSVFHSYT 77 (309)
T ss_dssp ---CTTEEEEEECTTT---CBEEEECTTTTTTC-------CCSBGGGGBCTTTHHHHHHHT
T ss_pred HHHhcCCEEEEEECCC---ceEEEECCHHHHHcCCCHHHHcCCchhhccCHhHHHHHHHhc
Confidence 56666666778876 5 999999999999999999999999999999988877665543
No 69
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=96.55 E-value=0.00096 Score=56.02 Aligned_cols=56 Identities=11% Similarity=-0.054 Sum_probs=47.2
Q ss_pred HHhhCCCEEEEEcC-CCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHH
Q 023651 23 ALDELPDSFTITDP-SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81 (279)
Q Consensus 23 ~l~~~~~~i~~~d~-~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~ 81 (279)
+++++..-+++++. + |+|+|+|+.+..++||++++++|+++.++.+|++...+...
T Consensus 31 ~L~aldgF~~vvs~~~---G~i~yvS~~~~~~Lg~~~~el~g~s~~d~ihp~D~~~f~~q 87 (317)
T 4dj3_A 31 TSKNTDTFAAVFSFLS---GRLVHISEQAALILNSKRGFLKSVHFVDLLAPQDVRAFYAH 87 (317)
T ss_dssp HTSCTTEEEEEEETTT---CBEEEECTTHHHHTTCCHHHHHTSBGGGGBCGGGHHHHHHH
T ss_pred HHhccCCEEEEEEcCC---cEEEEECCHHHHHcCCCHHHHcCCchhhhcChhhHHHHHHh
Confidence 46666666677776 6 99999999999999999999999999999888887766554
No 70
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=94.56 E-value=0.045 Score=37.99 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=23.0
Q ss_pred hhhhcccceEeeCCCCCCCCEEEechhhhhhhC
Q 023651 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278 (279)
Q Consensus 246 ~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~ 278 (279)
+++.+...++++|+ +.-|+|+|++|++++|
T Consensus 22 l~e~~~~~i~~~d~---~g~i~~~N~a~~~~~G 51 (126)
T 3bwl_A 22 LFENSPDMIDVLDA---DGTICEVNQRFCAELG 51 (126)
T ss_dssp HHHHCSSEEEEECT---TCBEEEECHHHHHHHT
T ss_pred HHhhCCcEEEEEcC---CCCEEEEcHHHHHHhC
Confidence 44445556677775 6779999999999998
No 71
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=94.30 E-value=0.0086 Score=48.28 Aligned_cols=57 Identities=14% Similarity=0.113 Sum_probs=36.9
Q ss_pred ccceeccccccccCCCCc-----c----ccccc--ccccHHHHHHHHhhhhhHhhhhhccccc-ccccc
Q 023651 170 DSLLDLDRVLALDSDDTG-----L----EIEDS--CEASDLEKRKAATAIDNILSVLTHYSQL-TGRLV 226 (279)
Q Consensus 170 ~~l~~~~~~l~~~~~~~~-----~----~~~~~--~~~~~~~~~~a~~~~~~i~~~l~~~s~~-~g~~~ 226 (279)
.++..++|+|++|++... + ....+ .......+.....++..+++.|++++++ .+...
T Consensus 22 ~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~ 90 (258)
T 2c2a_A 22 EFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQ 90 (258)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcc
Confidence 467789999999997611 1 11111 1222334556778999999999999987 44443
No 72
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=92.53 E-value=0.11 Score=35.83 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=28.2
Q ss_pred hhhhhhhcccceEeeCCCCCCCCEEEechhhhhhhC
Q 023651 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278 (279)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~ 278 (279)
+..+++.+...++++|+ +..|+|+|++|++++|
T Consensus 7 ~~~~~~~~~~~i~~~d~---~g~i~~~N~a~~~~~G 39 (120)
T 2gj3_A 7 FRQTVEHAPIAISITDL---KANILYANRAFRTITG 39 (120)
T ss_dssp HHHHHHHCSSEEEEECT---TCBEEEECHHHHHHHC
T ss_pred HHHHHHhCCCeEEEECC---CCCEEeehHHHHHHHC
Confidence 55677778888888986 6789999999999998
No 73
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=92.26 E-value=0.13 Score=43.37 Aligned_cols=39 Identities=8% Similarity=-0.002 Sum_probs=32.9
Q ss_pred EEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCC
Q 023651 32 TITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72 (279)
Q Consensus 32 ~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~ 72 (279)
++++.+ +++|+.+|..+.+++|+++++++|++...++++
T Consensus 46 l~~~~~--~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~~ 84 (337)
T 2ool_A 46 FVVSET--DLRIASVSANVEDLLRQPPASLLNVPIAHYLTA 84 (337)
T ss_dssp EEECTT--TCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCH
T ss_pred EEEECC--CCEEEEEehhHHHHHCcCHHHHcCCCHHHHcCH
Confidence 445542 389999999999999999999999998888764
No 74
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=91.21 E-value=0.18 Score=36.60 Aligned_cols=36 Identities=53% Similarity=0.826 Sum_probs=32.0
Q ss_pred hhhhhhhcccceEeeCCCCCCCCEEEechhhhhhhC
Q 023651 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278 (279)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~ 278 (279)
+..+++.+...++++|+..|+.-|+|+|++|.+++|
T Consensus 37 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G 72 (166)
T 3ue6_A 37 LVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTG 72 (166)
T ss_dssp HHHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHC
T ss_pred HHHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhC
Confidence 667788888889999987778999999999999998
No 75
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=90.27 E-value=0.25 Score=33.87 Aligned_cols=33 Identities=9% Similarity=0.112 Sum_probs=27.7
Q ss_pred hhhhhhhcccceEeeCCCCCCCCEEEechhhhhhhC
Q 023651 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278 (279)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~ 278 (279)
+..+++.+...+.++|+ +.-|+|+|++|++++|
T Consensus 13 ~~~l~e~~~d~i~~~d~---~g~i~~vN~a~~~l~G 45 (117)
T 2r78_A 13 YRALFEHAIDGIFIMDA---EGHYLDVNPAICSAIG 45 (117)
T ss_dssp HHHHHHHCSSEEEEECT---TSBEEEECHHHHHHHC
T ss_pred HHHHHhcCCceEEEECC---CCCEEEecHHHHHHHC
Confidence 55667777788888886 5779999999999998
No 76
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=89.22 E-value=0.29 Score=34.12 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=26.9
Q ss_pred hhhhhhhcccceEeeCCCCCCCCEEEechhhhhhhC
Q 023651 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278 (279)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~ 278 (279)
+..+++.+...++++|+ +.-|+|+|++|++++|
T Consensus 18 ~~~l~~~~~d~i~~~d~---~g~i~~~N~a~~~l~G 50 (130)
T 1d06_A 18 LRSILDTVPDATVVSAT---DGTIVSFNAAAVRQFG 50 (130)
T ss_dssp HHHHHTTCSSEEEEEET---TSBEEEECHHHHHHHC
T ss_pred HHHHHhhCcCeEEEECC---CCeEEEEcHHHHHHHC
Confidence 45566667777888886 6789999999999998
No 77
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=88.90 E-value=0.059 Score=43.22 Aligned_cols=47 Identities=6% Similarity=-0.033 Sum_probs=11.8
Q ss_pred CCcEEEEEEEEeccchhHHHHhccccccccCCchhhhHHHHHhhccccCCccceeccccccccCCC
Q 023651 120 DGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDD 185 (279)
Q Consensus 120 ~g~~~~~v~~~~DITerk~~e~~l~~~~~dgNR~l~~~~~l~~~~r~~~~~~l~~~~~~l~~~~~~ 185 (279)
.|....+....+|+|.++..+.++... .+++. .-..++|+|++||+.
T Consensus 17 ~g~~~~~~~~~~e~~~~~~~e~~~~~~------------~laal-------las~IaHELrtPL~~ 63 (247)
T 4fpp_A 17 RGSHNQMTETVTETTAPASPEADVQGP------------DFAAM-------LAARLCHDFISPASA 63 (247)
T ss_dssp --------------------------C------------HHHHH-------HHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhHH------------HHHHH-------HHhccCHHHhHHHHH
Confidence 455566777888999988775554221 11110 112588999999976
No 78
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=87.48 E-value=0.52 Score=37.44 Aligned_cols=36 Identities=31% Similarity=0.449 Sum_probs=30.0
Q ss_pred hhhhhhhcccceEeeCCCCCCCCEEEechhhhhhhC
Q 023651 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278 (279)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~ 278 (279)
+..+++.+...++++|+..++..|+|+|++|++++|
T Consensus 65 ~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G 100 (258)
T 3p7n_A 65 VLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTG 100 (258)
T ss_dssp HHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHC
T ss_pred HHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcC
Confidence 566677777788999976557779999999999998
No 79
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=86.97 E-value=8.4 Score=29.35 Aligned_cols=96 Identities=9% Similarity=0.097 Sum_probs=56.5
Q ss_pred HHHHHHHhhCCC--EEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEEE
Q 023651 18 LWVHEALDELPD--SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (279)
Q Consensus 18 ~~~~~~l~~~~~--~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (279)
..+..+....+. .++++|.+ |.++..++. ...+.. ..+.+. +..++..+.....+
T Consensus 58 ~~L~~~~~~~~~~~~i~i~d~~---G~~~~~~~~----------~~~~~~------~~~r~~----f~~a~~~~~~~is~ 114 (217)
T 4dah_A 58 SILEKTFDSEPRFSGLYFLNAK---GDVTASTTE----------LKTKVN------LADRSF----FIKAKETKKTVISD 114 (217)
T ss_dssp HHHHHHHTTCTTEEEEEEEETT---CBEEEESSC----------CSSCCB------CTTSHH----HHHHHHHCSCEECC
T ss_pred HHHHHHHhcCCcccEEEEECCC---CcEEEecCC----------CCCCCC------cchhHH----HHHHHhcCCcEEec
Confidence 345555555554 57889999 998875430 001111 112222 23444556554444
Q ss_pred EEEEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccchhHHH
Q 023651 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (279)
Q Consensus 96 ~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk~~ 139 (279)
...-...|. ++.....|+.+ .+|++.|+++..-++....+.
T Consensus 115 ~~~~~~~g~--~~i~ia~pi~~-~~g~~~Gvl~~~i~l~~l~~~ 155 (217)
T 4dah_A 115 SYSSRITGQ--PIFTICVPVLD-SKRNVTDYLVAAIQIDYLKNL 155 (217)
T ss_dssp CEECTTTCS--EEEEEEEEEEC-TTSCEEEEEEEEEEHHHHHHH
T ss_pred eEEcCCCCC--EEEEEEEEEEC-CCCCEEEEEEEEEcHHHHHHH
Confidence 333344555 56667889987 799999999988887765443
No 80
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=86.90 E-value=0.12 Score=42.89 Aligned_cols=29 Identities=10% Similarity=0.084 Sum_probs=25.0
Q ss_pred EEEEEEEeeecCCCcEEEEEEEEe-ccchhHH
Q 023651 108 MLFKMSLVFGKEDGRATHFVAVQV-PIVSRKH 138 (279)
Q Consensus 108 ~~~~~~pi~~~~~g~~~~~v~~~~-DITerk~ 138 (279)
+.....|+++ +|+++|++++.+ |+|+++.
T Consensus 111 v~~~~~Pi~~--~g~vigvl~~~~~di~~~~~ 140 (305)
T 2ykf_A 111 HSVEVSPVRF--GDQVVAVLTRHQPELAARRR 140 (305)
Confidence 5678899987 789999999999 9998754
No 81
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=85.46 E-value=0.74 Score=31.34 Aligned_cols=36 Identities=17% Similarity=0.499 Sum_probs=28.8
Q ss_pred hhhhhhhcccceEeeCCCCCCCCEEEechhhhhhhC
Q 023651 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278 (279)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~ 278 (279)
+...++.+...+.++|+..|+..|+|+|++|.+++|
T Consensus 21 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g 56 (138)
T 2l0w_A 21 IIRKFEGQSRKFIIANARVENCAVIYCNDGFCELCG 56 (138)
T ss_dssp HHHHHTTTTSEEEEEESSSTTCBEEEECSHHHHHHS
T ss_pred HHHHHhcCCCCEEEEecCCCCCEEEEeCHHHHHHhC
Confidence 444455577788888876667889999999999998
No 82
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=85.08 E-value=0.81 Score=30.50 Aligned_cols=32 Identities=13% Similarity=0.216 Sum_probs=25.4
Q ss_pred hhhhhhcccceEeeCCCCCCCCEEEechhhhhhhC
Q 023651 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278 (279)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~ 278 (279)
...++.+...+++.|+ +.-|+|+|++|++++|
T Consensus 16 ~~~~~~~~~~i~~~d~---~g~i~~~N~~~~~l~G 47 (118)
T 3olo_A 16 HYLINNAVEASFCLGD---NWQFLYVNDATCRMTE 47 (118)
T ss_dssp HHHHHHCSSEEEEECT---TSBEEEECHHHHHHHC
T ss_pred HHHHhcCCceEEEECC---CCcEEEEHHHHHHHHC
Confidence 3455666667788875 6789999999999998
No 83
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=83.18 E-value=0.18 Score=40.44 Aligned_cols=56 Identities=18% Similarity=0.150 Sum_probs=35.7
Q ss_pred ccceeccccccccCCCC-----cccc----cccccccHHHHHHHHhhhhhHhhhhhccccc-cccc
Q 023651 170 DSLLDLDRVLALDSDDT-----GLEI----EDSCEASDLEKRKAATAIDNILSVLTHYSQL-TGRL 225 (279)
Q Consensus 170 ~~l~~~~~~l~~~~~~~-----~~~~----~~~~~~~~~~~~~a~~~~~~i~~~l~~~s~~-~g~~ 225 (279)
.++..++|++++|++.. .+.. ..........+......+..+++.++++++. .+..
T Consensus 42 ~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~ 107 (268)
T 4ew8_A 42 DFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGEM 107 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 45668999999999761 1111 1111222333556778899999999999987 4433
No 84
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=80.33 E-value=1.2 Score=32.60 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=27.8
Q ss_pred hhhhhhhcccceEeeCCCCCCCCEEEechhhhhhhC
Q 023651 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278 (279)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~ 278 (279)
|..+++.+..++++.|+ +.-|+++|+++++++|
T Consensus 24 l~~il~~~~~gi~v~D~---~g~I~~~N~a~~~~~G 56 (152)
T 3mxq_A 24 LSELLDQLSFALCIVRN---DYVIVKVNEYFESRVI 56 (152)
T ss_dssp HHHHHHHHCCEEEEEET---TSBEEEECHHHHHTSS
T ss_pred HHHHHhcCCCCEEEEcC---CCEEEEECHHHHHHHC
Confidence 45566777778899986 7789999999999998
No 85
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=79.30 E-value=1.6 Score=28.53 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=27.1
Q ss_pred hhhhhhhcccceEeeCCCCCCCCEEEechhhhhhhC
Q 023651 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278 (279)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~ 278 (279)
+...++.+...+.+.|+ +.-++++|++|.+++|
T Consensus 5 ~~~~~~~~~~~i~~~d~---~g~i~~~N~~~~~~~g 37 (114)
T 3luq_A 5 LRLFTEHAPAALAMFDR---EMRYLAVSRRWREDYG 37 (114)
T ss_dssp HHHHHHTCSSEEEEEET---TCBEEEECHHHHHHTT
T ss_pred HHHHHhcCCceEEEEcC---CcEEEEECHHHHHHHC
Confidence 55667777777888875 6789999999999998
No 86
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=79.14 E-value=1.9 Score=28.68 Aligned_cols=32 Identities=19% Similarity=0.239 Sum_probs=27.3
Q ss_pred hhhhhhcccceEeeCCCCCCCCEEEechhhhhhhC
Q 023651 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278 (279)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~ 278 (279)
..+++.+...++++|+ +.-|+|+|+++.+++|
T Consensus 10 ~~il~~~~~~i~~~D~---~g~I~~~N~aa~~l~g 41 (115)
T 3b33_A 10 SAILNNMVTATLILDD---GLAIRYANPAAELLFS 41 (115)
T ss_dssp HHHHHHCSSEEEEECT---TCBEEEECHHHHHHTT
T ss_pred HHHHhhcCceEEEECC---CCcEEEECHHHHHHhC
Confidence 3467888888899986 6789999999999998
No 87
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=78.00 E-value=1.3 Score=29.90 Aligned_cols=33 Identities=6% Similarity=0.069 Sum_probs=24.0
Q ss_pred hhhhhhhcccceEeeCCCCCCCCEEEechhhhhhhC
Q 023651 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278 (279)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~ 278 (279)
+..+++.+...+++.|+ +.-|+++|++|.+++|
T Consensus 21 ~~~i~~~~~~~i~~~d~---~g~i~~~N~~~~~~~g 53 (125)
T 3fc7_A 21 FESLVSDSPDGIVHLTT---NGTILSVNPSMAGRLG 53 (125)
T ss_dssp -----CCSCCEEEEEET---TSBEEEECHHHHHHHT
T ss_pred HHHHHhcCCCeEEEEcC---CCeEEEECHHHHHHhC
Confidence 45566777777888886 6789999999999998
No 88
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=77.80 E-value=2.2 Score=28.23 Aligned_cols=36 Identities=42% Similarity=0.774 Sum_probs=28.7
Q ss_pred hhhhhhhcccceEeeCCCCCCCCEEEechhhhhhhC
Q 023651 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278 (279)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~ 278 (279)
+...++.+...+.+++..-++.-|+|+|++|.+++|
T Consensus 8 ~~~~~~~~~~~i~~~d~~d~~~~i~~~N~~~~~~~g 43 (130)
T 2z6d_A 8 LKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTG 43 (130)
T ss_dssp HHHHHHHTTCEEEEEETTSTTCCEEEECHHHHHHHC
T ss_pred HHHHHHhcccceeeeeccCCCCcEEEecHHHHHHhC
Confidence 667778888888888732246789999999999988
No 89
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=77.62 E-value=8.6 Score=31.99 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=38.6
Q ss_pred EEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHh
Q 023651 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88 (279)
Q Consensus 31 i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~ 88 (279)
++++|.+ ++|+.++..+..++|.++++++|++...+++ ......+...+..
T Consensus 32 Ll~~~~~---~~I~~~S~N~~~~lg~~~~~~lG~~l~~ll~----~~~~~~l~~~l~~ 82 (327)
T 4e04_A 32 LLALAAD---MTIVAGSDNLPELTGLAIGALIGRSAADVFD----SETHNRLTIALAE 82 (327)
T ss_dssp EEEECTT---CBEEEEETTHHHHHSCCHHHHTTCBHHHHBC----HHHHHHHHHHHHS
T ss_pred EEEEcCC---CeEEEEcccHHHHhCCChHhhcCCCHHHHcC----HHHHHHHHHHhhc
Confidence 4567766 9999999999999999999999998777764 2333444555443
No 90
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=77.31 E-value=0.25 Score=38.22 Aligned_cols=53 Identities=13% Similarity=0.072 Sum_probs=17.0
Q ss_pred CccceeccccccccCCCCc-----ccccccc----cccHHHHHHHHhhhhhHhhhhhccccc
Q 023651 169 SDSLLDLDRVLALDSDDTG-----LEIEDSC----EASDLEKRKAATAIDNILSVLTHYSQL 221 (279)
Q Consensus 169 ~~~l~~~~~~l~~~~~~~~-----~~~~~~~----~~~~~~~~~a~~~~~~i~~~l~~~s~~ 221 (279)
..++..++|++++|++... +...... ......+.....++..+++.++++++.
T Consensus 3 ~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~ 64 (222)
T 3jz3_A 3 RRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRL 64 (222)
T ss_dssp -------------------------------------CEECCC-CHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456789999999997621 1111110 111111334677899999999999986
No 91
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=77.04 E-value=1.1 Score=29.66 Aligned_cols=33 Identities=24% Similarity=0.207 Sum_probs=27.4
Q ss_pred hhhhhhhcccceEeeCCCCCCCCEEEechhhhhhhC
Q 023651 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278 (279)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~ 278 (279)
+..+++.+...++++|+ +.-|+|+|++|.+++|
T Consensus 17 ~~~il~~~~~~i~~~d~---~g~i~~~N~~~~~~~g 49 (118)
T 2w0n_A 17 RQAMLQSIKEGVVAVDD---RGEVTLINDAAQELLN 49 (118)
T ss_dssp HHHHHHCCCCCCEEEBT---TTBCCCBCHHHHHHHC
T ss_pred HHHHHhhccccEEEECC---CCcEeehhHHHHHHhC
Confidence 55667777788888886 6779999999999998
No 92
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=76.72 E-value=1.7 Score=30.97 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=27.7
Q ss_pred hhhhhhhcccceEeeC-CCCCCCCEEEechhhhhhhC
Q 023651 243 LYISLGRIKQSFVLID-PHLPDMPMVYASDAFLKLTG 278 (279)
Q Consensus 243 l~~~~~~~~~~~~~~~-~~~p~~p~~~~~~~~~~~~~ 278 (279)
+..+++.+...+++.| + +.-++|+|++|.+++|
T Consensus 19 ~~~~~~~~~~~i~~~d~~---~~~i~~~N~~~~~~~g 52 (158)
T 3k3c_A 19 VRRIFEHIPAILVGLEGP---DHRFVAVNAAYRGFSP 52 (158)
T ss_dssp HHHHHHHCSSEEEEEETT---TTEEEEECHHHHHHCT
T ss_pred HHHHHhcCCceEEEEECC---CcEeHHHHHHHHHHcC
Confidence 6677777788888887 5 6789999999999998
No 93
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=76.49 E-value=1.3 Score=30.03 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=26.8
Q ss_pred hhhhhhhcccceEeeCCCCCCCCEEEechhhhhhhC
Q 023651 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278 (279)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~ 278 (279)
...+++.+...+++.|+ +.-|+|+|++|++++|
T Consensus 14 ~~~il~~~~~~i~~~D~---~g~i~~~N~a~~~l~g 46 (118)
T 3fg8_A 14 RENLYFQGGLGFMALDE---DLRIIYVNSGCLRHVR 46 (118)
T ss_dssp CCCSSSCTTCEEEEECT---TCBEEEECHHHHHHHT
T ss_pred HHHHHhhCCceEEEECC---CCeEEEECHHHHHHhC
Confidence 34556677777888885 7789999999999988
No 94
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=75.82 E-value=2.4 Score=27.77 Aligned_cols=33 Identities=12% Similarity=0.029 Sum_probs=26.9
Q ss_pred hhhhhhhcccceEeeCCCCCCCCEEEechhhhhhhC
Q 023651 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278 (279)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~ 278 (279)
+...++.+...+.+.|+ +.-|+|+|++|.+++|
T Consensus 9 ~~~~~~~~~~~i~~~d~---~~~i~~~N~~~~~~~g 41 (124)
T 3lyx_A 9 RAKAFDYVFDAIVVTDL---QGFIIDWNKGSETLYG 41 (124)
T ss_dssp HHHGGGTCSSEEEEEET---TCBEEEECHHHHHHHC
T ss_pred HHHHHhhcCceEEEECC---CCcEeehhhHHHHHhC
Confidence 55667777777888885 6789999999999988
No 95
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=73.66 E-value=2.2 Score=31.69 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=27.2
Q ss_pred hhhhhhhcccceEeeC-CCCCCCCEEEechhhhhhhC
Q 023651 243 LYISLGRIKQSFVLID-PHLPDMPMVYASDAFLKLTG 278 (279)
Q Consensus 243 l~~~~~~~~~~~~~~~-~~~p~~p~~~~~~~~~~~~~ 278 (279)
+..+++.+...+++.| + +.-|+|+|++|.+++|
T Consensus 39 l~~l~~~~~~~i~~~d~~---~g~i~~~N~a~~~l~G 72 (185)
T 3kx0_X 39 VRRIFEHIPAILVGLEGP---DHRFVAVNAAYRGFSP 72 (185)
T ss_dssp HHHHHHHCSSEEEEEETT---TTEEEEECHHHHHHCC
T ss_pred HHHHHhcCCceEEEEECC---CcEEEEEcHHHHHHcC
Confidence 5667777777788887 5 6789999999999998
No 96
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=71.54 E-value=1.5 Score=31.32 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=28.0
Q ss_pred hhhhhhhcccceEeeCCCCCCCCEEEechhhhhhhC
Q 023651 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278 (279)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~ 278 (279)
+..+++.+...+.++|++.++.-|+|+|++|.+++|
T Consensus 27 ~~~i~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g 62 (162)
T 3sw1_A 27 LQSMVDASNDGIVVAEKEGDDTILIYVNAAFEYLTG 62 (162)
T ss_dssp HHHHHHTCSSEEEEEEEETTEEEEEEECHHHHHHHT
T ss_pred HHHHHhhccCcEEEEeCCCCccEEEEECHHHHHHHC
Confidence 566677777788888864433379999999999988
No 97
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=71.21 E-value=2.5 Score=29.59 Aligned_cols=27 Identities=48% Similarity=0.794 Sum_probs=21.2
Q ss_pred cceEeeCCCCCCCCEEEechhhhhhhC
Q 023651 252 QSFVLIDPHLPDMPMVYASDAFLKLTG 278 (279)
Q Consensus 252 ~~~~~~~~~~p~~p~~~~~~~~~~~~~ 278 (279)
..++++|..-++..|+|+|++|++++|
T Consensus 36 ~~i~~~d~~d~~g~i~~~N~a~~~l~G 62 (149)
T 3d72_A 36 VALILCDLKQKDTPIVYASEAFLYMTG 62 (149)
T ss_dssp SCEEEEETTSTTCCEEEECHHHHHHHC
T ss_pred ccEEEEeccCCCCcEEEECHHHHHHHC
Confidence 456777633357889999999999998
No 98
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=69.57 E-value=4.1 Score=30.20 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=29.5
Q ss_pred hhhhhhhhcccceEeeCCCCCCCCEEEechhhhhhhC
Q 023651 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278 (279)
Q Consensus 242 ~l~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~ 278 (279)
.+..+++.+..+++++|+ +.-|+++|+++.+++|
T Consensus 81 ~l~~il~~~~~gvi~~D~---~g~I~~~N~aa~~llg 114 (190)
T 2jhe_A 81 ALSALLEALPEPVLSVDM---KSKVDMANPASCQLFG 114 (190)
T ss_dssp HHHHHHHHCSSCEEEECT---TCBEEEECHHHHHHHT
T ss_pred HHHHHHHhCCCcEEEEcC---CCCEEEEcHHHHHHhC
Confidence 367788888889999997 6789999999999988
No 99
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=69.14 E-value=4.4 Score=28.62 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=27.3
Q ss_pred hhhhhhhcccceEeeCCCCCCCCEEEechhhhhhhC
Q 023651 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278 (279)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~ 278 (279)
+..+++.+...+++.|+ +.-|+|+|++|.+++|
T Consensus 42 ~~~~l~~~~~~i~~~d~---~g~i~~~N~~~~~l~g 74 (167)
T 1v9y_A 42 FFPALEQNMMGAVLINE---NDEVMFFNPAAEKLWG 74 (167)
T ss_dssp HHHHHHTCSSEEEEECT---TSBEEEECHHHHHHHS
T ss_pred HHHHHHhCCCCEEEECC---CCcEEEECHHHHHHhC
Confidence 56677777778888885 6789999999999988
No 100
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=62.91 E-value=32 Score=23.14 Aligned_cols=36 Identities=14% Similarity=0.347 Sum_probs=31.6
Q ss_pred HHHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCC
Q 023651 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFS 57 (279)
Q Consensus 19 ~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~ 57 (279)
..+.+..++|..+++-+.. ..|+|.|.+|.+++--.
T Consensus 21 ~iq~iY~nSPVpVCVRNq~---RkilYaN~aF~elF~Ke 56 (127)
T 4ew7_A 21 SIQDIYKNSPVPVCVRNQS---RKIIYANGAFIELFSKE 56 (127)
T ss_dssp HHHHHHTTCSSCEEEECTT---SCEEEECHHHHHHTTSC
T ss_pred hHHhhhcCCCccEEEeccc---ceEEEecchHHHHhhcc
Confidence 4577889999999999999 99999999999996543
No 101
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=62.82 E-value=6 Score=25.82 Aligned_cols=33 Identities=9% Similarity=0.068 Sum_probs=25.4
Q ss_pred hhhhhhhcccceEeeCCCCCC-CCEEEechhhhhhhC
Q 023651 243 LYISLGRIKQSFVLIDPHLPD-MPMVYASDAFLKLTG 278 (279)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~p~-~p~~~~~~~~~~~~~ 278 (279)
+..+++.+...+.+.++ + .-++|+|++|.+++|
T Consensus 13 ~~~~~~~~~~~i~~~d~---~~~~i~~~n~~~~~~~g 46 (125)
T 3eeh_A 13 VRELTEATNDILWEFTA---DLSEVLVINSAYEDIWG 46 (125)
T ss_dssp HHHHHSCCCCEEEEEET---TSSCEEEECTHHHHHHS
T ss_pred HHHHHhcCCceEEEEEc---CCCcEEEecHHHHHHHC
Confidence 45566666667777775 4 579999999999988
No 102
>2hje_A Autoinducer 2 sensor kinase/phosphatase LUXQ; PER/ARNT/simple-minded (PAS) fold, autoinducer-2 (AI-2), quorum sensing, histidine sensor kinase; 1.70A {Vibrio harveyi} SCOP: d.110.6.3 PDB: 2hj9_C 1zhh_B*
Probab=61.35 E-value=55 Score=25.33 Aligned_cols=89 Identities=11% Similarity=0.012 Sum_probs=57.7
Q ss_pred HhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEEEEEEEcCCC
Q 023651 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDG 103 (279)
Q Consensus 24 l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG 103 (279)
..++|+--|+.+.+ +. +|-.+-..++|.+..++ ..+.+.......|.... ....+
T Consensus 58 p~~~pDfRFI~~~~---~~--~WdDgNa~FyGi~~~~L------------------~~L~~~v~~~~~Wh~~~--~~s~~ 112 (221)
T 2hje_A 58 PSHTPEFRFLTDHK---GI--IWDDGNAHFYGVNDLIL------------------DSLANRVSFSNNWYYIN--VMTSI 112 (221)
T ss_dssp GGGCCSEEEEECSS---SE--EEECSGGGGGTCCHHHH------------------HHHHHHCCSSSSCEEEE--EEETT
T ss_pred cCCCCcEEEEEeCC---ce--EEECCCccccccCHHHH------------------HHHHhhhcccCceEEEE--eccCC
Confidence 35788988888877 54 34455556777765432 23333333445555432 34567
Q ss_pred ceEEEEEEEEEeeecCCCcEEEEEEEEeccchhH
Q 023651 104 TPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (279)
Q Consensus 104 ~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk 137 (279)
..+++.+..+|+.+...|++.|+.-+..-.-..-
T Consensus 113 g~~~lLvRR~pIi~~~tGeVlG~Ly~gvVLnnNf 146 (221)
T 2hje_A 113 GSRHMLVRRVPILDPSTGEVLGFSFNAVVLDNNF 146 (221)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEEEECTTCH
T ss_pred CceEEEEEccceecCCCCcEEEEEEEEEEecCcH
Confidence 7888999999999767899999876665444433
No 103
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=58.21 E-value=61 Score=24.93 Aligned_cols=95 Identities=12% Similarity=0.128 Sum_probs=53.4
Q ss_pred HHHHHHHhhCCC--EEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHH--hCCCeE
Q 023651 18 LWVHEALDELPD--SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR--EERPIE 93 (279)
Q Consensus 18 ~~~~~~l~~~~~--~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~ 93 (279)
..+..+....+. .++++|.+ |. +..+.. .. ..+.+ ..+.+. +..+.. .+..+.
T Consensus 58 ~~L~~~~~~~~~~~~i~i~d~~---G~-~~~s~~------~~---~~~~~------~~~r~~----f~~a~~~~~~~~~i 114 (254)
T 3lif_A 58 ERLRALADNLPQLSDVAILDAD---GQ-LTYASV------KP---VPALD------NSDRSY----FRYHRANDDHTLLI 114 (254)
T ss_dssp HHHHHHHHHCTTEEEEEEECTT---SB-EEEESS------SS---EECCB------CTTSHH----HHHHHHCCCCCCEE
T ss_pred HHHHHHHhcCCccceEEEECCC---CC-EecCCC------CC---CCCCC------cccHHH----HHHHHhCCCCCeEE
Confidence 445556666665 58899999 98 443221 00 01111 112222 334444 344444
Q ss_pred EEEEEEcCCCceEEEEEEEEEeeecCCCcEEEEEEEEeccchhHH
Q 023651 94 VNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (279)
Q Consensus 94 ~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk~ 138 (279)
.+...-...|. |+.....|+.+ .+|.+.|++++..++....+
T Consensus 115 s~p~~~~~~g~--~~i~~~~pi~~-~~g~~~Gvl~~~i~l~~l~~ 156 (254)
T 3lif_A 115 TGPIQSRTSGV--WVFVVSRRLET-TDGKFFGVVVATIESEYFST 156 (254)
T ss_dssp EEEEECTTTCC--EEEEEEEEEEC-TTCCEEEEEEEEECHHHHHH
T ss_pred CCceecCCCCc--EEEEEEeeeeC-CCCCEeEEEEEEECHHHHHH
Confidence 44333333454 56667889987 79999999998887754443
No 104
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=57.45 E-value=5 Score=29.07 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=29.9
Q ss_pred hhhhhhhcccceEeeCCCCCCCCEEEechh---hhhhhC
Q 023651 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDA---FLKLTG 278 (279)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~p~~p~~~~~~~---~~~~~~ 278 (279)
|..+++.+...+.++|+ +.-|+|+|++ +.+++|
T Consensus 21 l~~IL~~~~~gI~~vD~---~g~I~~~N~a~~~~~~i~g 56 (151)
T 2qkp_A 21 ANLILNHLPLEITFVNK---DDIFQYYNDSVPAAEMVFK 56 (151)
T ss_dssp HHHHHHHSSSEEEEEET---TSBEEEECCCSCGGGCSSC
T ss_pred HHHHHHhCCCceEEEcC---CCeEEEEeCCCchhhhhcC
Confidence 78889999999999997 7889999999 899987
No 105
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=54.34 E-value=6.5 Score=32.96 Aligned_cols=39 Identities=13% Similarity=0.052 Sum_probs=33.5
Q ss_pred EEEEcC-CCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCC
Q 023651 31 FTITDP-SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72 (279)
Q Consensus 31 i~~~d~-~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~ 72 (279)
++++|. + ++|+.++..+..++|.++++++|++...++.+
T Consensus 55 LL~l~~~~---~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~ 94 (343)
T 3s7o_A 55 LLTADGHS---GEVLQMSLNAATFLGQEPTVLRGQTLAALLPE 94 (343)
T ss_dssp EEEEETTT---CBEEEEETTHHHHHSSCHHHHTTCBHHHHSTT
T ss_pred EEEEECCC---CEEEEEcccHHHHhCcChHHHcCCCHHHHHhH
Confidence 456665 5 99999999999999999999999998777765
No 106
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=53.04 E-value=6 Score=17.46 Aligned_cols=9 Identities=22% Similarity=0.855 Sum_probs=7.9
Q ss_pred CCEEEechh
Q 023651 264 MPMVYASDA 272 (279)
Q Consensus 264 ~p~~~~~~~ 272 (279)
.||||.|..
T Consensus 6 vpiiycnrr 14 (21)
T 8tfv_A 6 VPIIYCNRR 14 (26)
T ss_dssp CCCEEEEGG
T ss_pred ccEEEEcCc
Confidence 799999976
No 107
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=52.77 E-value=8.8 Score=25.17 Aligned_cols=33 Identities=12% Similarity=-0.015 Sum_probs=20.1
Q ss_pred hhhhhhhcccceEeeCCCCCCCCEEEechhhhhhhC
Q 023651 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278 (279)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~ 278 (279)
+..+++.....+...|+ +.-++++|++|.+++|
T Consensus 9 l~~~~~~~~~~i~~~d~---~~~~~~~n~~~~~~~G 41 (125)
T 3nja_A 9 LHTAESDAGIGSWVLHM---ESGRLEWSQAVHDIFG 41 (125)
T ss_dssp --------CCEEEEEET---TTTEEEECHHHHHHHT
T ss_pred HHHHHHhCCeeEEEEEc---CCCcEEECHHHHHHhC
Confidence 34455555666667765 5668999999999998
No 108
>3c38_A Autoinducer 2 sensor kinase/phosphatase LUXQ; 2-component system, quorum sensing, histidine kinase, hydrolase, inner membrane, membrane; 2.30A {Vibrio cholerae} PDB: 3c30_A
Probab=51.74 E-value=65 Score=25.76 Aligned_cols=90 Identities=12% Similarity=0.206 Sum_probs=57.3
Q ss_pred hhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEEEEEEEcCCCc
Q 023651 25 DELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGT 104 (279)
Q Consensus 25 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~ 104 (279)
.++|+--++.+.+ |.+ |-.+-..++|.+..++ ..+.+....+..|... .....+.
T Consensus 78 ~~~pDfRFI~~~~---~~~--WdDgNa~FyGi~~~~L------------------~~L~~~v~~~~~Wh~~--~~~s~~g 132 (270)
T 3c38_A 78 SNAPDLRFISSHD---NIL--WDDGNASFYGIAQQEL------------------NKLIRRVAISGNWHLV--QTPSEGK 132 (270)
T ss_dssp GGCCSEEEEEETT---EEE--EECSCGGGGTCCHHHH------------------HHHHHHSCSSSSCEEE--EECCSSS
T ss_pred cCCCcEEEEEeCC---ceE--EECCCCceeCCCHHHH------------------HHHHhhcccCCceEEE--EeccCCC
Confidence 5678888888877 543 3444455666654332 3333444444555543 3456777
Q ss_pred eEEEEEEEEEeeecCCCcEEEEEEEEeccchhHHH
Q 023651 105 PFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (279)
Q Consensus 105 ~~~~~~~~~pi~~~~~g~~~~~v~~~~DITerk~~ 139 (279)
.+.+.+...|+.+...|++.|+.-+....-..-..
T Consensus 133 ~~~lLvRr~pIid~~TGEVlG~Ly~gvVLnnNfsl 167 (270)
T 3c38_A 133 SVHILMRRSSLIEAGTGQVVGYLYVGIVLNDNFAL 167 (270)
T ss_dssp CEEEEEEEEEECCCC-CCCCEEEEEEEECTTCHHH
T ss_pred ceEEEEEccceecCCCCcEEEEEEEEEEecCcHHH
Confidence 88899999999975689999987776666554444
No 109
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=48.63 E-value=63 Score=22.23 Aligned_cols=77 Identities=18% Similarity=0.145 Sum_probs=43.7
Q ss_pred CEEEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCCCCCCHHHHHHHHHHHHhCCCeEEEEEEEcCCCceEEE
Q 023651 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWM 108 (279)
Q Consensus 29 ~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~ 108 (279)
+.++++|.+ |..++... .+.+|.+... .+. +..++ .++.+.... .|...+.
T Consensus 51 ~~i~v~d~~---G~~~a~~~----------~~~iG~~~~~--~~~--------~~~al-~G~~~~~~~-----~g~~g~~ 101 (131)
T 1p0z_A 51 TYITVGDAS---GQRLYHVN----------PDEIGKSMEG--GDS--------DEALI-NAKSYVSVR-----KGSLGSS 101 (131)
T ss_dssp SEEEEEETT---SBEEECSS----------GGGTTSBCCS--SCC--------HHHHH-HCCCEEEEE-----EETTEEE
T ss_pred CEEEEEcCC---CcEEEecC----------hhhCCCcccC--CCc--------HHHHh-CCCeEEEEE-----Eccceee
Confidence 468889999 88766432 2346764321 111 12333 344433321 1222233
Q ss_pred EEEEEEeeecCCCcEEEEEEEEeccch
Q 023651 109 LFKMSLVFGKEDGRATHFVAVQVPIVS 135 (279)
Q Consensus 109 ~~~~~pi~~~~~g~~~~~v~~~~DITe 135 (279)
.....|+.+ ++|+++|++.+..++..
T Consensus 102 ~~~~~PV~~-~~g~viGvv~vg~~l~~ 127 (131)
T 1p0z_A 102 LRGKSPIQD-ATGKVIGIVSVGYTIEQ 127 (131)
T ss_dssp EEEEEEEEC-TTCCEEEEEEEEEEGGG
T ss_pred EEEEEeEEC-CCCCEEEEEEEEEEhHH
Confidence 344569987 68999999998877653
No 110
>1yyp_B DNA polymerase, POL; processivity fold (SAME fold AS HSV UL42, PCNA, and homotrim sliding clamps), replication-transferase complex; HET: DNA; 2.50A {Human herpesvirus 5}
Probab=48.40 E-value=7.4 Score=18.97 Aligned_cols=12 Identities=25% Similarity=0.249 Sum_probs=10.3
Q ss_pred EEechhhhhhhC
Q 023651 267 VYASDAFLKLTG 278 (279)
Q Consensus 267 ~~~~~~~~~~~~ 278 (279)
||..+.|+.+.|
T Consensus 5 iYl~~~Fl~~c~ 16 (26)
T 1yyp_B 5 LHLEPAFLPYSV 16 (26)
T ss_pred EecCHHHHHHhh
Confidence 889999998865
No 111
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=43.98 E-value=20 Score=25.17 Aligned_cols=33 Identities=18% Similarity=0.092 Sum_probs=27.9
Q ss_pred hhhhhhcccceEeeCCCCCCCCEEEechhhhhhhCC
Q 023651 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGS 279 (279)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~ 279 (279)
.+.++.+..++++.|+ +.-|++.|.+..+++|-
T Consensus 20 ~~~ld~l~~Gii~lD~---~g~I~~~N~~~e~~sG~ 52 (125)
T 1nwz_A 20 DGQLDGLAFGAIQLDG---DGNILQYNAAEGDITGR 52 (125)
T ss_dssp HHHHTTCSSEEEEEET---TCBEEEECHHHHHHHCC
T ss_pred HHHHhccCceEEEECC---CCEEEEEHHHHHHHhCC
Confidence 3457888888999996 78899999999999983
No 112
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=42.79 E-value=50 Score=29.25 Aligned_cols=36 Identities=17% Similarity=0.132 Sum_probs=30.1
Q ss_pred EEEEcCCCCCCcEEecchHHHHHhCCCcchhcCCCCCC-CCC
Q 023651 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM-FQG 71 (279)
Q Consensus 31 i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~-l~~ 71 (279)
++++|.+ +.|+.++..+..++|.++ ++|++... +++
T Consensus 29 Ll~l~~~---~~I~~~S~N~~~~lg~~~--~lG~~l~~~ll~ 65 (505)
T 3nhq_A 29 LVTLRAD---GMVLAASENIQALLGFVA--SPGSYLTQEQVG 65 (505)
T ss_dssp EEEECTT---SBEEEEETTHHHHHSSCC--CTTCBCCHHHHH
T ss_pred EEEEcCC---CeEEEEcccHHHHhCccc--ccCCchhhhhCC
Confidence 4567777 999999999999999988 89998776 553
No 113
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=39.68 E-value=21 Score=25.22 Aligned_cols=32 Identities=9% Similarity=0.095 Sum_probs=27.5
Q ss_pred hhhhhcccceEeeCCCCCCCCEEEechhhhhhhCC
Q 023651 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGS 279 (279)
Q Consensus 245 ~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~ 279 (279)
+.++.+..++++.|+ +.-|++.|.+..+++|.
T Consensus 26 ~~ld~l~~GiivlD~---dg~I~~~N~~~e~isG~ 57 (129)
T 1mzu_A 26 AEFDALPVGAIQVDG---SGVIHRYNRTESRLSGR 57 (129)
T ss_dssp TTGGGCSSEEEEEET---TCBEEEECHHHHHHHCC
T ss_pred HHHhccCceEEEECC---CCeEEEEHHHHHHHhCC
Confidence 357888888999996 78899999999999983
No 114
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=37.88 E-value=3 Score=27.82 Aligned_cols=49 Identities=10% Similarity=0.042 Sum_probs=31.0
Q ss_pred ccceeccccccccCCCCc--ccc-cccccccHHHHHHHHhhhhhHhhhhhcc
Q 023651 170 DSLLDLDRVLALDSDDTG--LEI-EDSCEASDLEKRKAATAIDNILSVLTHY 218 (279)
Q Consensus 170 ~~l~~~~~~l~~~~~~~~--~~~-~~~~~~~~~~~~~a~~~~~~i~~~l~~~ 218 (279)
.++..++|++++|+.... .+. ..........+..++..|..+++++++|
T Consensus 62 ~~~~~~shel~tpl~~i~~~~e~l~~~~~~~~~~i~~~~~~l~~~i~~ll~~ 113 (114)
T 3zcc_A 62 LLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDY 113 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHcChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356789999999996611 100 0111111245667888999999998876
No 115
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=35.69 E-value=10 Score=33.85 Aligned_cols=38 Identities=16% Similarity=0.132 Sum_probs=32.0
Q ss_pred EEEEcC-CCCCCcEEecchHHHHHhCCCcchhcCCCCCCCCC
Q 023651 31 FTITDP-SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQG 71 (279)
Q Consensus 31 i~~~d~-~~~~g~i~~~N~~~~~l~G~~~~e~~G~~~~~l~~ 71 (279)
++++|. + ++|+.++.....++|.++++++|++...+++
T Consensus 32 LLal~~~~---~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~ 70 (520)
T 3zq5_A 32 VVVLQEPD---LTISQISANCTGILGRSPEDLLGRTLGEVFD 70 (520)
T ss_dssp EEEEETTT---TEEEEEETTHHHHHSCCHHHHTTSBHHHHCE
T ss_pred EEEEECCC---CEEEEEcccHHHHhCcChHHHcCCCHHHHcC
Confidence 456665 5 9999999999999999999999998766654
No 116
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=33.51 E-value=6.7 Score=30.29 Aligned_cols=53 Identities=4% Similarity=-0.044 Sum_probs=32.0
Q ss_pred CccceeccccccccCCC-----Cccccccc----ccccHHHHHHHHhhhhhHhhhhhccccc
Q 023651 169 SDSLLDLDRVLALDSDD-----TGLEIEDS----CEASDLEKRKAATAIDNILSVLTHYSQL 221 (279)
Q Consensus 169 ~~~l~~~~~~l~~~~~~-----~~~~~~~~----~~~~~~~~~~a~~~~~~i~~~l~~~s~~ 221 (279)
..++..++|++++|++. ..+..... .......+.....++..+++.++.+++.
T Consensus 15 ~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~ 76 (244)
T 3d36_A 15 THLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKP 76 (244)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCS
T ss_pred HHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566899999999976 11111111 1112223445777888999999988875
No 117
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=32.22 E-value=1.5e+02 Score=21.93 Aligned_cols=30 Identities=10% Similarity=0.026 Sum_probs=21.7
Q ss_pred EEEEEEEEeeecCC-CcEEEEEEEEeccchhH
Q 023651 107 WMLFKMSLVFGKED-GRATHFVAVQVPIVSRK 137 (279)
Q Consensus 107 ~~~~~~~pi~~~~~-g~~~~~v~~~~DITerk 137 (279)
++.....|+.+ .+ |++.|++++..++....
T Consensus 118 ~~i~~~~pi~~-~~~g~~~Gvl~~~i~~~~l~ 148 (240)
T 3c8c_A 118 ILVSVATPVKD-SATGQFLGSIFYDVSLAELA 148 (240)
T ss_dssp EEEEEEEEEEC-TTTCCEEEEEEEEECHHHHH
T ss_pred EEEEEEEEEEE-CCCCeEEEEEEEEEEHHHHH
Confidence 55566789887 44 99999998877765443
No 118
>3hva_A Protein FIMX; ggdef diguanylate cyclase, biofilm, C-DI-GMP, transferase; 2.04A {Pseudomonas aeruginosa PAO1}
Probab=30.74 E-value=21 Score=25.87 Aligned_cols=37 Identities=11% Similarity=0.057 Sum_probs=16.6
Q ss_pred hHHHHhcc--cccccc--C--Cchhhh---HHHHHhhccccCCccc
Q 023651 136 RKHMRNSG--MSYSED--G--GGSRLR---EIVFGSCRREVCSDSL 172 (279)
Q Consensus 136 rk~~e~~l--~~~~~d--g--NR~l~~---~~~l~~~~r~~~~~~l 172 (279)
.++.++++ .+.+|+ | ||..|. +..+..+.+.....+|
T Consensus 2 ~~~~~~~l~~~~~~D~lTgL~Nr~~f~~~l~~~~~~~~~~~~~~~l 47 (177)
T 3hva_A 2 AMGSEEKLREVSSQDPVTGLYNRSHFLDLMDAAVQQAVTARKPSTL 47 (177)
T ss_dssp ----------CCCBCTTTCSEEHHHHHHHHHHHHHHHHHTCCCEEE
T ss_pred cchHHHHHHHhhCcCcccccchHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 34556666 334555 5 999998 4455555444444444
No 119
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=29.44 E-value=33 Score=31.32 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=24.0
Q ss_pred hhhhhcccceEeeCCCCCCCCEEEechhhhhhhC
Q 023651 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278 (279)
Q Consensus 245 ~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~ 278 (279)
..++.....+.++|+ +..|+|+|++|.++||
T Consensus 522 ~lle~a~~~i~~~D~---~grI~~~N~a~~~l~G 552 (635)
T 4eho_A 522 SQVHASMQPVLITDA---EGRILLMNDSFRDMLP 552 (635)
T ss_dssp HHHHHCSSCCEEEET---TCCEEEECHHHHTTSC
T ss_pred HHHHhCCCcEEEECC---CCeEeeHHHHHHHHHC
Confidence 344555566777775 6779999999999998
No 120
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=28.86 E-value=7.4 Score=33.04 Aligned_cols=56 Identities=7% Similarity=-0.196 Sum_probs=35.3
Q ss_pred ccceeccccccccCCCC--c---ccc----cccccccHHHHHHHHhhhhhHhhhhhccccc-cccc
Q 023651 170 DSLLDLDRVLALDSDDT--G---LEI----EDSCEASDLEKRKAATAIDNILSVLTHYSQL-TGRL 225 (279)
Q Consensus 170 ~~l~~~~~~l~~~~~~~--~---~~~----~~~~~~~~~~~~~a~~~~~~i~~~l~~~s~~-~g~~ 225 (279)
.++..++|++++|++.. + +.. ..........+.....++..++++++++++. .+.+
T Consensus 123 ~~l~~i~helrtpL~~i~~g~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~ 188 (388)
T 1gkz_A 123 QLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFV 188 (388)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHSSSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEE
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 45668889999988651 1 111 1111222334456778899999999999987 4443
No 121
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=28.84 E-value=92 Score=25.28 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=31.1
Q ss_pred HHHHHHHHhhCCCEEEEEcCCCCCCcEEecchHHHHHhC
Q 023651 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSG 55 (279)
Q Consensus 17 ~~~~~~~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G 55 (279)
...++.+++..+..-+++|.. ..++.||+++..+++
T Consensus 98 ~p~l~~lLd~l~~PA~V~d~~---~dvla~N~~a~~L~~ 133 (292)
T 3pxp_A 98 LQYLIDMIRNMNVPAFVTDQY---VNIIAANMITIRFFN 133 (292)
T ss_dssp HHHHHHHHHTCSSCEEEEETT---CBEEEEEHHHHHHHT
T ss_pred CHHHHHHHHhcCCCeEEECCC---CCHhhcCHHHHHHhC
Confidence 345777888887788999999 999999999999996
No 122
>3qyy_A Response regulator; C-DI-GMP, DGC, ggdef, competitive inhibition, xanthomonas Ca signaling protein-inhibitor complex; HET: C2E; 1.90A {Xanthomonas campestris PV}
Probab=28.08 E-value=28 Score=24.91 Aligned_cols=34 Identities=9% Similarity=-0.096 Sum_probs=16.9
Q ss_pred HHhcc--cccccc--C--Cchhhh---HHHHHhhccccCCccc
Q 023651 139 MRNSG--MSYSED--G--GGSRLR---EIVFGSCRREVCSDSL 172 (279)
Q Consensus 139 ~e~~l--~~~~~d--g--NR~l~~---~~~l~~~~r~~~~~~l 172 (279)
+++++ .+.+|+ | ||..|. +..+..+.+.+...+|
T Consensus 3 ~~~~l~~~a~~D~lTgL~Nr~~f~~~l~~~~~~~~~~~~~~~l 45 (167)
T 3qyy_A 3 AMRDLKRHALFDPLTEALNRRGCEQAMRDSVTAAQREGWPFVL 45 (167)
T ss_dssp -------CTTBCTTTCSBCHHHHHHHHHHHHHHHHHHCCCCEE
T ss_pred HHHHHHHHhCcCcccCCCcHHHHHHHHHHHHHHHHhhCCcEEE
Confidence 34445 344555 5 999998 4555555555444444
No 123
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=26.18 E-value=79 Score=22.13 Aligned_cols=27 Identities=11% Similarity=0.225 Sum_probs=20.7
Q ss_pred EEEEEeeecCCCcEEEEEEEEeccchhH
Q 023651 110 FKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (279)
Q Consensus 110 ~~~~pi~~~~~g~~~~~v~~~~DITerk 137 (279)
....|+.+ ++|+++|++++..++....
T Consensus 108 ~~~~PV~~-~~g~viGvv~vg~~~~~~~ 134 (142)
T 3by8_A 108 RVFTPIYD-ENHKQIGVVAIGLELSRVT 134 (142)
T ss_dssp EEEEEEEC-TTSCEEEEEEEEEEHHHHH
T ss_pred EEEEeEEc-CCCCEEEEEEEeEEHHHHH
Confidence 34459987 6899999999988876543
No 124
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=25.65 E-value=45 Score=26.30 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=29.0
Q ss_pred HHhhCCCEEEEEcCCCCCCcEEecchHHHHHhCCCcchh
Q 023651 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEI 61 (279)
Q Consensus 23 ~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~ 61 (279)
........++++|-. .+.+.+++..+..++||+++++
T Consensus 38 ~~~~~~~~~~l~D~~--~~~~~~~s~~~~~llG~~~~~~ 74 (258)
T 3clo_A 38 LTEVNGGCAVISDLS--NRKSYVTVHPWANFLGLTPEEA 74 (258)
T ss_dssp HHHHHSSEEEEEETT--TTEEEEEECTTCGGGCCCHHHH
T ss_pred HHHHcCCeEEEEEcC--CCeEEEEeCCHHHHhCCCcccc
Confidence 333345668889943 2899999999999999999877
No 125
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=25.41 E-value=28 Score=29.46 Aligned_cols=15 Identities=7% Similarity=0.000 Sum_probs=11.5
Q ss_pred cceeccccccccCCC
Q 023651 171 SLLDLDRVLALDSDD 185 (279)
Q Consensus 171 ~l~~~~~~l~~~~~~ 185 (279)
++..++|+|++|+++
T Consensus 98 ~~~~~~HeLrtpl~~ 112 (394)
T 2e0a_A 98 DFVDTLIKVRNRHHN 112 (394)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhh
Confidence 567888999996544
No 126
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=21.12 E-value=41 Score=28.91 Aligned_cols=44 Identities=9% Similarity=0.011 Sum_probs=26.4
Q ss_pred EEeccchhHHHHhccc---------ccccc--C--Cchhhh---HHHHHhhccccCCccc
Q 023651 129 VQVPIVSRKHMRNSGM---------SYSED--G--GGSRLR---EIVFGSCRREVCSDSL 172 (279)
Q Consensus 129 ~~~DITerk~~e~~l~---------~~~~d--g--NR~l~~---~~~l~~~~r~~~~~~l 172 (279)
.+.|++++++.++++. +.+|. | ||+.|. ++.+..+.+.+...+|
T Consensus 263 ~v~~~~~~~~~~~~l~~~~~~~~~~~~~D~lTgl~nr~~~~~~l~~~~~~~~~~~~~~~l 322 (459)
T 1w25_A 263 RVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSA 322 (459)
T ss_dssp HHHHHHHHHHHHHHHHSSSSCCSTTCCBCTTTCCBCHHHHHHHHHHHHHHHHTSSCCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcCccccCcCHHHHHHHHHHHHHHHhhcCCcEEE
Confidence 3467778877766552 23444 5 999998 5555555555444444
Done!