Query 023652
Match_columns 279
No_of_seqs 96 out of 104
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 05:37:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023652.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023652hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3148 Uncharacterized conser 100.0 2E-42 4.4E-47 310.6 6.4 138 112-275 2-139 (231)
2 PF03942 DTW: DTW domain; Int 99.9 5.9E-24 1.3E-28 184.1 8.9 124 146-275 1-124 (203)
3 KOG4382 Uncharacterized conser 96.9 0.0024 5.1E-08 59.9 6.5 122 144-275 17-146 (276)
4 PRK09919 anti-adapter protein 74.3 0.84 1.8E-05 38.7 -0.5 70 148-224 9-79 (114)
5 PF08965 DUF1870: Domain of un 64.5 6.4 0.00014 33.5 2.8 32 57-88 26-58 (118)
6 PRK00939 translation initiatio 62.9 4.4 9.6E-05 33.1 1.5 28 149-178 3-30 (99)
7 PF13202 EF-hand_5: EF hand; P 54.3 4.7 0.0001 24.9 0.2 13 54-66 11-23 (25)
8 PF06769 Plasmid_Txe: Plasmid 47.7 9.3 0.0002 30.2 1.0 55 62-123 7-67 (80)
9 PF15546 DUF4653: Domain of un 45.6 30 0.00065 32.5 4.1 40 68-125 149-191 (239)
10 COG2888 Predicted Zn-ribbon RN 34.5 23 0.0005 27.3 1.3 17 139-156 43-59 (61)
11 PRK14890 putative Zn-ribbon RN 30.7 25 0.00055 26.8 1.0 16 140-156 42-57 (59)
12 PRK06824 translation initiatio 27.4 47 0.001 28.2 2.1 20 147-166 16-35 (118)
13 PTZ00150 phosphoglucomutase-2- 20.7 60 0.0013 33.3 1.8 45 62-109 10-61 (584)
No 1
>COG3148 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2e-42 Score=310.55 Aligned_cols=138 Identities=19% Similarity=0.383 Sum_probs=127.6
Q ss_pred cccccchhhhhhhhhhhccccchhhhHHHhhcCCCcccccccCCcCCCcccCCCcCCccccCcEEEEEecCCcccCCCch
Q 023652 112 EDKKHRATYQTLGESEKKLQFFTARQIACRLLGSQGYLCQKCWIAMEDCMCSKVKHCSLWYGVRFWLYMHPKDFLRQNNT 191 (279)
Q Consensus 112 edkkhrl~~qrLa~S~rk~~pF~ARq~~~r~lGsr~~rC~~C~Lp~~~CICs~vp~~~L~s~irF~LLMHpnE~lKpSNT 191 (279)
|+--|+||++||++|+| ||.|| |++..+|+.|+++..+|+|+++|+.. ++++|+|||||+|++|||||
T Consensus 2 ~~a~~~l~~~rl~r~t~---pf~ar-------g~~~~rC~~C~l~~~~CLCa~ip~~e--a~~~~~Ll~hdtE~~kpsNT 69 (231)
T COG3148 2 ENAVLQLRQERLARATR---PFLAR-------GNRVRRCQRCLLPEKHCLCATIPPLE--ARSRFCLLMHDTEPMKPSNT 69 (231)
T ss_pred chHHHHHHHHHHHHhhc---hhhhc-------CCcchhhhhhCChhhhccccCcCCcc--cceeEEEEecCccccCCCcc
Confidence 34458999999999999 99999 99999999999999999999999955 99999999999999999999
Q ss_pred hhHHHHhhhccchhhcccCCCccHHHHHHHHHhcCCCceEEEecCCCCCcceeeecccCCCCCCCccCCCCCCceeEEEe
Q 023652 192 GKLLWQVLGVQAATLCLYGVAEDEEIMWSAFKRAGKSKVWCLYPNKNAIKMSVQDTLGYGSSEDLEYTPMMAVTQMLVLL 271 (279)
Q Consensus 192 GRLIadvLp~dt~af~~WgRtE~E~~LW~rl~~~p~~qp~lLFPse~s~~~s~v~~~~~~~s~~~~~~~~~~K~PLFILL 271 (279)
||||+|+++ |+++|. |+|+++++.|.+++++ |+|+||||||++|+.+.+++. ... ..+|+|+||||
T Consensus 70 grliad~l~-dt~a~~-wsRte~~~eLl~ll~~-P~~~p~lvfP~e~a~e~t~v~----------~~~-p~~k~plfIll 135 (231)
T COG3148 70 GRLIADILA-DTRAFQ-WSRTEPNPELLALLAN-PDYQPYLVFPAEYAEELTEVI----------STA-PAEKPPLFILL 135 (231)
T ss_pred hhHHHHhhh-hhhhhh-ccccCCCHHHHHHHhC-CCCceEEEcchHHHHHHHHHh----------hcc-cccCCceEEEe
Confidence 999999999 999998 9999999999999999 999999999999999998873 112 23589999999
Q ss_pred cccc
Q 023652 272 HRLM 275 (279)
Q Consensus 272 DGT~ 275 (279)
|||-
T Consensus 136 DgTW 139 (231)
T COG3148 136 DGTW 139 (231)
T ss_pred cCcc
Confidence 9994
No 2
>PF03942 DTW: DTW domain; InterPro: IPR005636 This presumed domain is found in bacterial and eukaryotic proteins. Its function is unknown. The domain contains multiple conserved motifs including a DTXW motif that this domain has been named after.
Probab=99.90 E-value=5.9e-24 Score=184.10 Aligned_cols=124 Identities=19% Similarity=0.356 Sum_probs=98.4
Q ss_pred CcccccccCCcCCCcccCCCcCCccccCcEEEEEecCCcccCCCchhhHHHHhhhccchhhcccCCCccHHHHHHHHHhc
Q 023652 146 QGYLCQKCWIAMEDCMCSKVKHCSLWYGVRFWLYMHPKDFLRQNNTGKLLWQVLGVQAATLCLYGVAEDEEIMWSAFKRA 225 (279)
Q Consensus 146 r~~rC~~C~Lp~~~CICs~vp~~~L~s~irF~LLMHpnE~lKpSNTGRLIadvLp~dt~af~~WgRtE~E~~LW~rl~~~ 225 (279)
|..+|++|++|...|+|+.+++ ++.+++|+|||||+|..|++|||+|+...++ +...+. |++.+++..+...+..
T Consensus 1 rr~~C~~C~~~~~~C~C~~~~~--v~~~~~v~iL~Hp~E~~~~~nTg~l~~~~l~-~~~i~~-~~~~~~~~~~~~~~~~- 75 (203)
T PF03942_consen 1 RRFRCPRCWRPLSLCICSLIPP--VELPTRVVILQHPKERKRASNTGRLLALCLP-DCEIIV-WPRFEPDERLLELLSD- 75 (203)
T ss_pred CCCcCcCCCCccccCCCcCCCC--CCCCcEEEEEECchhhhcccChHHHHHHhhc-ccEEEE-eCCCCCCHHHHHHhhC-
Confidence 4689999999999999999999 5599999999999999999999999988777 766665 9999888876666665
Q ss_pred CCCceEEEecCCCCCcceeeecccCCCCCCCccCCCCCCceeEEEecccc
Q 023652 226 GKSKVWCLYPNKNAIKMSVQDTLGYGSSEDLEYTPMMAVTQMLVLLHRLM 275 (279)
Q Consensus 226 p~~qp~lLFPse~s~~~s~v~~~~~~~s~~~~~~~~~~K~PLFILLDGT~ 275 (279)
+.++++||||+++|.+...+..... ...........+++++||+||||=
T Consensus 76 ~~~~~~lLfP~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~lIviDgTW 124 (203)
T PF03942_consen 76 PPYRTVLLFPSEDAIDLEELFSAAS-GEALQSSEEDSGKPKTLIVIDGTW 124 (203)
T ss_pred CCCcEEEEeeCCcccchhHHhhhhc-cccccccccccCCceEEEEECCch
Confidence 9999999999999998876511100 000011122358999999999993
No 3
>KOG4382 consensus Uncharacterized conserved protein, contains DTW domain [Function unknown]
Probab=96.89 E-value=0.0024 Score=59.86 Aligned_cols=122 Identities=17% Similarity=0.233 Sum_probs=79.6
Q ss_pred CCCcccccccCCcCCCcccCCCcCCccccCcEEEEEecCCcccCCCchhhHHHHhhhccchhhcccCCCccHHHHHHHHH
Q 023652 144 GSQGYLCQKCWIAMEDCMCSKVKHCSLWYGVRFWLYMHPKDFLRQNNTGKLLWQVLGVQAATLCLYGVAEDEEIMWSAFK 223 (279)
Q Consensus 144 Gsr~~rC~~C~Lp~~~CICs~vp~~~L~s~irF~LLMHpnE~lKpSNTGRLIadvLp~dt~af~~WgRtE~E~~LW~rl~ 223 (279)
|-|-..|++|--|.+-|+|...|..-...+..+.+|-||-|-.+.=||-+++- +++.+..|-+. .+..+.....
T Consensus 17 ~~rR~~C~~CdrP~~lClC~~lp~p~~~~~~~I~ILqHp~E~kh~LnTt~il~--lgL~n~v~~V~----~~~~f~~hv~ 90 (276)
T KOG4382|consen 17 GTRRPTCPSCDRPSQLCLCKKLPSPCFDNQVSITILQHPLERKHALNTTRILR--LGLKNVVFDVH----DEAEFLIHVI 90 (276)
T ss_pred CcCCCCCCccCCCceeEEecCCCCCCcCCcceEEEeeCchHhhhhcchhhHHH--hccccceeecc----cchhhhheec
Confidence 66778999999999999999998654568999999999999999999999987 44445455432 2333444444
Q ss_pred hc------CCCceEEEe--cCCCCCcceeeecccCCCCCCCccCCCCCCceeEEEecccc
Q 023652 224 RA------GKSKVWCLY--PNKNAIKMSVQDTLGYGSSEDLEYTPMMAVTQMLVLLHRLM 275 (279)
Q Consensus 224 ~~------p~~qp~lLF--Pse~s~~~s~v~~~~~~~s~~~~~~~~~~K~PLFILLDGT~ 275 (279)
.+ ..-+.++++ |+++|.+.+...-.. .. ........-+--.|++|||-
T Consensus 91 ~ag~s~i~~~p~~~l~~~~ps~dsv~l~e~~~~~---~l-~~~~~~~~~p~~ll~id~Tw 146 (276)
T KOG4382|consen 91 GAGCSKIDTNPLDSLYRVEPSDDSVKLGESGNVE---NL-ESEKNVVLVPHGLLEIDETW 146 (276)
T ss_pred cCCccccCCCcceeeeecCCCCCceeeccccccc---cc-cccccccCCCceeEEEccch
Confidence 21 233445555 777777766542111 00 00000122345688999985
No 4
>PRK09919 anti-adapter protein IraM; Provisional
Probab=74.28 E-value=0.84 Score=38.65 Aligned_cols=70 Identities=19% Similarity=0.442 Sum_probs=58.0
Q ss_pred ccccccCCcCCCcccCCCc-CCccccCcEEEEEecCCcccCCCchhhHHHHhhhccchhhcccCCCccHHHHHHHHHh
Q 023652 148 YLCQKCWIAMEDCMCSKVK-HCSLWYGVRFWLYMHPKDFLRQNNTGKLLWQVLGVQAATLCLYGVAEDEEIMWSAFKR 224 (279)
Q Consensus 148 ~rC~~C~Lp~~~CICs~vp-~~~L~s~irF~LLMHpnE~lKpSNTGRLIadvLp~dt~af~~WgRtE~E~~LW~rl~~ 224 (279)
.-||.|+.... ||++.+. +.-||-++-+ ++.|-+..+++|+|=||.| .-+-.-|++.+--++.+|+.+++
T Consensus 9 vi~P~tG~~FS-~i~~~~nlKlilWY~~d~--~L~pG~~i~~~~~gvliNd----k~~pItIYnvtpyn~~lW~~lk~ 79 (114)
T PRK09919 9 VISPSTGISFS-AISSLRNLKLILWYQADI--FLPPGSIITPVKSGVLLND----KPYPITIYNITPFNKALWSLLKS 79 (114)
T ss_pred EEcCCCCcchh-hhhhhhcceEEEEEeeeE--EeCCCCEEEEcCCeEEECC----cEeEEEEEEecccCHHHHHHhhc
Confidence 45999999999 9888553 3337888888 7889999999999999987 33456689999999999999996
No 5
>PF08965 DUF1870: Domain of unknown function (DUF1870); InterPro: IPR015060 This family consist of hypothetical bacterial proteins. ; PDB: 1S4K_A.
Probab=64.46 E-value=6.4 Score=33.55 Aligned_cols=32 Identities=22% Similarity=0.497 Sum_probs=20.4
Q ss_pred Cccchhhhccc-CCCCCchHHHHHHHHHHHHHH
Q 023652 57 GFITLQEWQGW-GAVSPLPALVQQIVEDLKALE 88 (279)
Q Consensus 57 ~~~~~~ew~~w-g~~sp~p~~v~~~v~~l~~~~ 88 (279)
++++.+.||.| --..|+|..|.+.+.+++...
T Consensus 26 ~~v~~~tWq~WE~G~~~IP~~Vie~l~~m~~~R 58 (118)
T PF08965_consen 26 QDVSSRTWQQWEKGERPIPDDVIEELLEMKSQR 58 (118)
T ss_dssp SS--HHHHHHHHTTSS---HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 36799999999 335689998888888776543
No 6
>PRK00939 translation initiation factor Sui1; Reviewed
Probab=62.91 E-value=4.4 Score=33.09 Aligned_cols=28 Identities=21% Similarity=0.600 Sum_probs=22.7
Q ss_pred cccccCCcCCCcccCCCcCCccccCcEEEE
Q 023652 149 LCQKCWIAMEDCMCSKVKHCSLWYGVRFWL 178 (279)
Q Consensus 149 rC~~C~Lp~~~CICs~vp~~~L~s~irF~L 178 (279)
.|+.|+++...|.|..+++.. ..+++.+
T Consensus 3 ~c~~c~~~~~~c~c~~~~~~~--~~i~I~~ 30 (99)
T PRK00939 3 ICPVCGLPKELCVCEEVAKEQ--QRIKIKV 30 (99)
T ss_pred cCccCCCCHHHccCcccCccC--ceEEEEE
Confidence 699999999999999998854 5555543
No 7
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=54.26 E-value=4.7 Score=24.89 Aligned_cols=13 Identities=38% Similarity=0.672 Sum_probs=10.9
Q ss_pred CCCCccchhhhcc
Q 023652 54 TDDGFITLQEWQG 66 (279)
Q Consensus 54 ~~~~~~~~~ew~~ 66 (279)
.+||.||.+||+.
T Consensus 11 d~DG~is~~E~~~ 23 (25)
T PF13202_consen 11 DGDGKISFEEFQR 23 (25)
T ss_dssp TSSSEEEHHHHHH
T ss_pred CCCCcCCHHHHHH
Confidence 4669999999975
No 8
>PF06769 Plasmid_Txe: Plasmid encoded toxin Txe; InterPro: IPR009614 The Axe-Txe pair in Enterococcus faecium (Streptococcus faecium) and the homologous YefM-YoeB pair in Escherichia coli have been shown to act as an antitoxin-toxin pair. This family describes the toxin component. Nearly every example found is next to an identifiable antitoxin, as indicated by match to IPR006442 from INTERPRO [].; GO: 0004519 endonuclease activity, 0006401 RNA catabolic process; PDB: 3OEI_L 2A6R_F 2A6Q_E 2A6S_D.
Probab=47.72 E-value=9.3 Score=30.19 Aligned_cols=55 Identities=29% Similarity=0.561 Sum_probs=31.2
Q ss_pred hhhcccCCCCCchHHHHHHHHHHHHHHHhcCCCCccCCCC------CCcccccccccccccchhhhhh
Q 023652 62 QEWQGWGAVSPLPALVQQIVEDLKALEKNFDAPMSFGGNG------GRLQGDFKILEDKKHRATYQTL 123 (279)
Q Consensus 62 ~ew~~wg~~sp~p~~v~~~v~~l~~~~~~~~~~~~f~~~~------~~l~g~~~~~edkkhrl~~qrL 123 (279)
++...|-.+. +..+.+|.+=++++.++ +|-|.| |.++|-+.--=|++|||+|+=-
T Consensus 7 ~d~~~~~~~d--~kl~kki~~li~~i~r~-----P~~G~gkpE~Lk~~~~g~~SRRI~~~hRLVY~v~ 67 (80)
T PF06769_consen 7 EDYKYWKKSD--KKLLKKINKLIKEIKRN-----PFTGIGKPEPLKGDLSGYWSRRINKKHRLVYEVD 67 (80)
T ss_dssp HHHHHHHCC---HHHHHHHHHHHHHHHHS-----TTSSTT--EE-SGGGTTEEEEESSSSEEEEEEEE
T ss_pred HHHHHHHHhC--HHHHHHHHHHHHHHHhc-----ccCCCCCCcccccCCCCeEEEEcCCCceEEEEEe
Confidence 3444453332 35555555555555543 455654 3344555666799999999765
No 9
>PF15546 DUF4653: Domain of unknown function (DUF4653)
Probab=45.61 E-value=30 Score=32.51 Aligned_cols=40 Identities=35% Similarity=0.544 Sum_probs=32.8
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhcCCCCccCCCCCCcccccccccccccch---hhhhhhh
Q 023652 68 GAVSPLPALVQQIVEDLKALEKNFDAPMSFGGNGGRLQGDFKILEDKKHRA---TYQTLGE 125 (279)
Q Consensus 68 g~~sp~p~~v~~~v~~l~~~~~~~~~~~~f~~~~~~l~g~~~~~edkkhrl---~~qrLa~ 125 (279)
|...||...|++.|..|...|+ ||.+|--||++ -|.|||-
T Consensus 149 ~p~d~l~psva~Avq~Lq~~Er------------------~KeqEkEKHhv~LvMYRRLAL 191 (239)
T PF15546_consen 149 GPPDPLLPSVAEAVQQLQAQER------------------YKEQEKEKHHVHLVMYRRLAL 191 (239)
T ss_pred CCcccccHHHHHHHHHHHHHHH------------------HHHHHHhhhhHHHHHHHHHHH
Confidence 4677888899999999999886 78888888875 4777774
No 10
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=34.52 E-value=23 Score=27.31 Aligned_cols=17 Identities=47% Similarity=1.022 Sum_probs=13.6
Q ss_pred HHhhcCCCcccccccCCc
Q 023652 139 ACRLLGSQGYLCQKCWIA 156 (279)
Q Consensus 139 ~~r~lGsr~~rC~~C~Lp 156 (279)
-||.||. .|+||+|++.
T Consensus 43 ~CRk~g~-~Y~Cp~CGF~ 59 (61)
T COG2888 43 KCRKLGN-PYRCPKCGFE 59 (61)
T ss_pred hHHHcCC-ceECCCcCcc
Confidence 4888875 6999999974
No 11
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=30.74 E-value=25 Score=26.82 Aligned_cols=16 Identities=38% Similarity=0.864 Sum_probs=12.0
Q ss_pred HhhcCCCcccccccCCc
Q 023652 140 CRLLGSQGYLCQKCWIA 156 (279)
Q Consensus 140 ~r~lGsr~~rC~~C~Lp 156 (279)
||-+| ..|.||+|++.
T Consensus 42 CRk~~-~~Y~CP~CGF~ 57 (59)
T PRK14890 42 CRKQS-NPYTCPKCGFE 57 (59)
T ss_pred HHhcC-CceECCCCCCc
Confidence 66665 57899999874
No 12
>PRK06824 translation initiation factor Sui1; Validated
Probab=27.39 E-value=47 Score=28.23 Aligned_cols=20 Identities=25% Similarity=0.811 Sum_probs=17.1
Q ss_pred cccccccCCcCCCcccCCCc
Q 023652 147 GYLCQKCWIAMEDCMCSKVK 166 (279)
Q Consensus 147 ~~rC~~C~Lp~~~CICs~vp 166 (279)
+.-|+.|++|...|.|....
T Consensus 16 g~~c~~cg~~~~~C~C~~~~ 35 (118)
T PRK06824 16 GRHCPDCGQPVAACICKQAA 35 (118)
T ss_pred CccCcccCCchhhhcccccc
Confidence 56899999999999998543
No 13
>PTZ00150 phosphoglucomutase-2-like protein; Provisional
Probab=20.73 E-value=60 Score=33.33 Aligned_cols=45 Identities=27% Similarity=0.660 Sum_probs=28.6
Q ss_pred hhhcccCCCCCchHH---HHHH--HHHHHHHHHhcCCCCccC--CCCCCcccccc
Q 023652 62 QEWQGWGAVSPLPAL---VQQI--VEDLKALEKNFDAPMSFG--GNGGRLQGDFK 109 (279)
Q Consensus 62 ~ew~~wg~~sp~p~~---v~~~--v~~l~~~~~~~~~~~~f~--~~~~~l~g~~~ 109 (279)
++|-.|. +-|.. +.++ ..|-+++|..|..++.|| |.+|.+--.|.
T Consensus 10 ~~wl~~~---~~~~~~~~~~~~~~~~~~~~l~~~f~~~i~FGT~GiRG~~g~~~~ 61 (584)
T PTZ00150 10 ELWLKWD---KDPETRKEIEELLASKDEEELKRRFLKRMEFGTAGLRGKMGAGFN 61 (584)
T ss_pred HHHHcCC---CCHHHHHHHHHHHhCCCHHHHHHHhCCCCcccCcccccccCCCCc
Confidence 5677776 33333 3344 334477889999999998 55666654443
Done!