Your job contains 1 sequence.
>023653
MARMVMMQHQTHPCFSILTSTLSGFNGASLHSQVRQQQQTPLPREALHVTASNEKKNPVM
AATQFAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQV
RGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRL
GVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLG
VENNRLYELRLQTPENVFVEEENDLRQVIDSFRVNKVSA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 023653
(279 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2130295 - symbol:PPD1 "PsbP-Domain Protein1" s... 773 9.0e-77 1
TAIR|locus:2203028 - symbol:CRB "chloroplast RNA binding"... 163 9.6e-10 1
TAIR|locus:2100681 - symbol:PPL1 "PsbP-like protein 1" sp... 113 4.2e-06 2
>TAIR|locus:2130295 [details] [associations]
symbol:PPD1 "PsbP-Domain Protein1" species:3702
"Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009654 "oxygen evolving complex" evidence=ISS] [GO:0030095
"chloroplast photosystem II" evidence=ISS] [GO:0009543 "chloroplast
thylakoid lumen" evidence=IDA] [GO:0031977 "thylakoid lumen"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0016020 "membrane"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048564 "photosystem I assembly" evidence=IMP]
InterPro:IPR002683 Pfam:PF01789 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR EMBL:AL161541 GO:GO:0019898 GO:GO:0005509
GO:GO:0009535 GO:GO:0031977 GO:GO:0015979 EMBL:Z97339 GO:GO:0009543
Gene3D:3.40.1000.10 InterPro:IPR016123 SUPFAM:SSF55724
EMBL:AY085014 EMBL:AK175561 IPI:IPI00526562 IPI:IPI00547165
IPI:IPI00657053 PIR:G71419 RefSeq:NP_001031646.1 RefSeq:NP_567468.1
RefSeq:NP_974555.1 UniGene:At.33171 ProteinModelPortal:O23403
SMR:O23403 DIP:DIP-58590N STRING:O23403 PaxDb:O23403 PRIDE:O23403
EnsemblPlants:AT4G15510.1 GeneID:827223 KEGG:ath:AT4G15510
TAIR:At4g15510 eggNOG:NOG329161 HOGENOM:HOG000242253
InParanoid:O23403 OMA:YPQNWIQ PhylomeDB:O23403 ProtClustDB:PLN00059
BioCyc:MetaCyc:AT4G15510-MONOMER Genevestigator:O23403
GO:GO:0009654 Uniprot:O23403
Length = 287
Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
Identities = 153/214 (71%), Positives = 176/214 (82%)
Query: 66 AVPRRNAM--ALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGA 123
AV RR +M L++S I S TA A V FREYIDTFDGYSFKYPQNWIQVRGA
Sbjct: 76 AVGRRKSMMMGLLMSGLIVSQANLP-TAFASTPV-FREYIDTFDGYSFKYPQNWIQVRGA 133
Query: 124 GADIFYRDPYVLDENVSVELXXXXXXRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVR 183
GADIF+RDP VLDEN+SVE Y S+EDLG P+E G++VLRQYLTEFMSTRLGV+
Sbjct: 134 GADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVK 193
Query: 184 RESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVEN 243
R++NILSTSSRVADDG+LYY VEVNIKS+ANNNELAVMP+DRV LEW+RRYL+VLGVEN
Sbjct: 194 RQANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLGVEN 253
Query: 244 NRLYELRLQTPENVFVEEENDLRQVIDSFRVNKV 277
+RLY +RLQTPE VF+EEE DLR+V+DSFRV K+
Sbjct: 254 DRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEKI 287
>TAIR|locus:2203028 [details] [associations]
symbol:CRB "chloroplast RNA binding" species:3702
"Arabidopsis thaliana" [GO:0005794 "Golgi apparatus" evidence=ISM]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0005773 "vacuole" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0010287
"plastoglobule" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0009611 "response to wounding" evidence=IEP]
[GO:0010319 "stromule" evidence=IDA] [GO:0042631 "cellular response
to water deprivation" evidence=IEP] [GO:0009409 "response to cold"
evidence=IEP;RCA] [GO:0042742 "defense response to bacterium"
evidence=IEP;RCA] [GO:0016020 "membrane" evidence=IDA] [GO:0007623
"circadian rhythm" evidence=IEP;IMP] [GO:0009658 "chloroplast
organization" evidence=IMP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=IGI;RCA] [GO:0048046 "apoplast" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0032544 "plastid translation"
evidence=IMP] [GO:0045727 "positive regulation of translation"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA;IMP] [GO:0005996 "monosaccharide
metabolic process" evidence=IMP] [GO:0010297 "heteropolysaccharide
binding" evidence=IDA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0000165 "MAPK cascade" evidence=RCA] [GO:0006098
"pentose-phosphate shunt" evidence=RCA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0006636 "unsaturated fatty
acid biosynthetic process" evidence=RCA] [GO:0009595 "detection of
biotic stimulus" evidence=RCA] [GO:0009637 "response to blue light"
evidence=RCA] [GO:0009657 "plastid organization" evidence=RCA]
[GO:0009697 "salicylic acid biosynthetic process" evidence=RCA]
[GO:0009814 "defense response, incompatible interaction"
evidence=RCA] [GO:0009853 "photorespiration" evidence=RCA]
[GO:0009862 "systemic acquired resistance, salicylic acid mediated
signaling pathway" evidence=RCA] [GO:0009867 "jasmonic acid
mediated signaling pathway" evidence=RCA] [GO:0009902 "chloroplast
relocation" evidence=RCA] [GO:0009965 "leaf morphogenesis"
evidence=RCA] [GO:0010027 "thylakoid membrane organization"
evidence=RCA] [GO:0010114 "response to red light" evidence=RCA]
[GO:0010200 "response to chitin" evidence=RCA] [GO:0010207
"photosystem II assembly" evidence=RCA] [GO:0010218 "response to
far red light" evidence=RCA] [GO:0010310 "regulation of hydrogen
peroxide metabolic process" evidence=RCA] [GO:0010363 "regulation
of plant-type hypersensitive response" evidence=RCA] [GO:0015995
"chlorophyll biosynthetic process" evidence=RCA] [GO:0016117
"carotenoid biosynthetic process" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0030154 "cell
differentiation" evidence=RCA] [GO:0031348 "negative regulation of
defense response" evidence=RCA] [GO:0034660 "ncRNA metabolic
process" evidence=RCA] [GO:0035304 "regulation of protein
dephosphorylation" evidence=RCA] [GO:0042793 "transcription from
plastid promoter" evidence=RCA] [GO:0043085 "positive regulation of
catalytic activity" evidence=RCA] [GO:0043900 "regulation of
multi-organism process" evidence=RCA] [GO:0050832 "defense response
to fungus" evidence=RCA] InterPro:IPR016040 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009506 GO:GO:0005773 GO:GO:0045893
GO:GO:0009611 GO:GO:0005777 GO:GO:0016020 eggNOG:COG0451
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0048046 GO:GO:0007623
GO:GO:0000272 GO:GO:0009409 GO:GO:0042742 GO:GO:0009941
GO:GO:0009658 GO:GO:0003723 GO:GO:0005840 GO:GO:0010287
GO:GO:0045727 GO:GO:0019843 GO:GO:0010319 GO:GO:0042631
GO:GO:0006364 HOGENOM:HOG000232785 ProtClustDB:PLN00016
GO:GO:0032544 EMBL:Y10557 EMBL:Y15382 EMBL:AC006416 EMBL:AY070022
EMBL:AF428282 EMBL:AY035050 EMBL:AF325043 EMBL:AY062570
EMBL:AY087609 IPI:IPI00548101 PIR:E86226 PIR:T51863 PIR:T52072
RefSeq:NP_172405.1 UniGene:At.21708 UniGene:At.50307
ProteinModelPortal:Q9SA52 SMR:Q9SA52 STRING:Q9SA52 PaxDb:Q9SA52
PRIDE:Q9SA52 ProMEX:Q9SA52 EnsemblPlants:AT1G09340.1 GeneID:837455
KEGG:ath:AT1G09340 TAIR:At1g09340 InParanoid:Q9SA52 OMA:PTYIYGP
PhylomeDB:Q9SA52 Genevestigator:Q9SA52 GO:GO:0010297 GO:GO:0005996
Uniprot:Q9SA52
Length = 378
Score = 163 (62.4 bits), Expect = 9.6e-10, P = 9.6e-10
Identities = 61/189 (32%), Positives = 98/189 (51%)
Query: 1 MARMVMMQHQTHPCFSILTSTLSGFNGASLHSQVRQQQQTPLPREALHVTASNEKKNPVM 60
MA+M+M+Q Q P FS+LTS+LS FNGA LH QV+ +++ P+ AL+V+AS+EKK +M
Sbjct: 1 MAKMMMLQ-QHQPSFSLLTSSLSDFNGAKLHLQVQYKRKVHQPKGALYVSASSEKKILIM 59
Query: 61 AATQFAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQV 120
T+F + + L+ + + F + +A+Q G E F +S K + +
Sbjct: 60 GGTRF-IGLFLSRILVKEGHQVTLFTRGKSPIAKQLPG--ESDQDFADFSSKI----LHL 112
Query: 121 RGAGADIFYRDPYVLDENVSVELXXXXXXRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRL 180
+G D + + E V + E++ P EA K L QY+ + S+
Sbjct: 113 KGDRKDYDFVKSSLSAEGFDVVYDING----REAEEVEPILEALPK-LEQYI--YCSSA- 164
Query: 181 GVRRESNIL 189
GV +S+IL
Sbjct: 165 GVYLKSDIL 173
>TAIR|locus:2100681 [details] [associations]
symbol:PPL1 "PsbP-like protein 1" species:3702
"Arabidopsis thaliana" [GO:0005509 "calcium ion binding"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009523 "photosystem II" evidence=IEA] [GO:0009654 "oxygen
evolving complex" evidence=IEA;ISS] [GO:0015979 "photosynthesis"
evidence=IEA] [GO:0019898 "extrinsic to membrane" evidence=IEA]
[GO:0030095 "chloroplast photosystem II" evidence=ISS] [GO:0009543
"chloroplast thylakoid lumen" evidence=IDA] [GO:0031977 "thylakoid
lumen" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0006364
"rRNA processing" evidence=RCA] [GO:0009657 "plastid organization"
evidence=RCA] [GO:0010103 "stomatal complex morphogenesis"
evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
[GO:0043085 "positive regulation of catalytic activity"
evidence=RCA] InterPro:IPR002683 Pfam:PF01789 GO:GO:0009507
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0019898 GO:GO:0005509
EMBL:AL132954 GO:GO:0031977 GO:GO:0015979 GO:GO:0009543
Gene3D:3.40.1000.10 InterPro:IPR016123 SUPFAM:SSF55724
GO:GO:0009654 EMBL:AF419553 EMBL:AY097338 EMBL:AY087663
IPI:IPI00528004 PIR:PA0046 PIR:T47672 RefSeq:NP_191093.1
UniGene:At.27396 ProteinModelPortal:P82538 SMR:P82538 STRING:P82538
PaxDb:P82538 PRIDE:P82538 EnsemblPlants:AT3G55330.1 GeneID:824699
KEGG:ath:AT3G55330 TAIR:At3g55330 eggNOG:NOG08775
HOGENOM:HOG000232965 InParanoid:P82538 KO:K02717 OMA:GYEFLYP
PhylomeDB:P82538 ProtClustDB:CLSN2685283 Genevestigator:P82538
GermOnline:AT3G55330 Uniprot:P82538
Length = 230
Score = 113 (44.8 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 31/119 (26%), Positives = 55/119 (46%)
Query: 93 AQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELXXXXXXRYK 152
A+ GF D D Y+F YP W +V G D Y+D E+VSV L +
Sbjct: 75 AESKKGFLAVSDNKDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNLVPTSK---Q 131
Query: 153 SVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKS 211
++++ GPPK+ ++++ L +++ ++ S D G+ YY E +++
Sbjct: 132 TIKEFGPPKQIAETLIKKVLAP-------PNQKTTLIDASEHDVD-GKTYYQFEFTVQA 182
Score = 50 (22.7 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 231 WDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSFRV 274
+ R L + V N Y L E + + ++ L V+DSF++
Sbjct: 185 YTRHALGTITVFNGNFYTLTTGANERRWEKMKDRLHTVVDSFKI 228
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.133 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 279 273 0.0010 114 3 11 22 0.47 33
32 0.40 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 3
No. of states in DFA: 603 (64 KB)
Total size of DFA: 188 KB (2108 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.22u 0.08s 22.30t Elapsed: 00:00:01
Total cpu time: 22.22u 0.08s 22.30t Elapsed: 00:00:01
Start: Fri May 10 13:20:44 2013 End: Fri May 10 13:20:45 2013