BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023653
(279 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O23403|PPD1_ARATH PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis
thaliana GN=PPD1 PE=1 SV=1
Length = 287
Score = 310 bits (794), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 159/214 (74%), Positives = 182/214 (85%), Gaps = 4/214 (1%)
Query: 66 AVPRRNAM--ALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGA 123
AV RR +M L++S I S TA A V FREYIDTFDGYSFKYPQNWIQVRGA
Sbjct: 76 AVGRRKSMMMGLLMSGLIVSQANL-PTAFASTPV-FREYIDTFDGYSFKYPQNWIQVRGA 133
Query: 124 GADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVR 183
GADIF+RDP VLDEN+SVE SSPSSS Y S+EDLG P+E G++VLRQYLTEFMSTRLGV+
Sbjct: 134 GADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVK 193
Query: 184 RESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVEN 243
R++NILSTSSRVADDG+LYY VEVNIKS+ANNNELAVMP+DRV LEW+RRYL+VLGVEN
Sbjct: 194 RQANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLGVEN 253
Query: 244 NRLYELRLQTPENVFVEEENDLRQVIDSFRVNKV 277
+RLY +RLQTPE VF+EEE DLR+V+DSFRV K+
Sbjct: 254 DRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEKI 287
>sp|P82538|PPL1_ARATH PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1
PE=1 SV=1
Length = 230
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 28/183 (15%)
Query: 93 AQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYK 152
A+ GF D D Y+F YP W +V G D Y+D E+VSV L P+S +
Sbjct: 75 AESKKGFLAVSDNKDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNL-VPTSKQ-- 131
Query: 153 SVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSF 212
++++ GPPK+ ++++ L + L +S DG+ YY E ++
Sbjct: 132 TIKEFGPPKQIAETLIKKVLAP--------PNQKTTLIDASEHDVDGKTYYQFEFTVQ-- 181
Query: 213 ANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSF 272
A N + R L + V N Y L E + + ++ L V+DSF
Sbjct: 182 ARN---------------YTRHALGTITVFNGNFYTLTTGANERRWEKMKDRLHTVVDSF 226
Query: 273 RVN 275
++
Sbjct: 227 KIT 229
>sp|Q9SA52|CP41B_ARATH Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic
OS=Arabidopsis thaliana GN=CSP41B PE=1 SV=1
Length = 378
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 49/65 (75%), Gaps = 1/65 (1%)
Query: 1 MARMVMMQHQTHPCFSILTSTLSGFNGASLHSQVRQQQQTPLPREALHVTASNEKKNPVM 60
MA+M+M+Q Q P FS+LTS+LS FNGA LH QV+ +++ P+ AL+V+AS+EKK +M
Sbjct: 1 MAKMMMLQ-QHQPSFSLLTSSLSDFNGAKLHLQVQYKRKVHQPKGALYVSASSEKKILIM 59
Query: 61 AATQF 65
T+F
Sbjct: 60 GGTRF 64
>sp|O80634|PPL2_ARATH PsbP-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPL2
PE=1 SV=2
Length = 238
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 75/181 (41%), Gaps = 32/181 (17%)
Query: 99 FREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLG 158
+ ++D DGYS+ YP +W + D ++D Y+ +NV V + + ++G
Sbjct: 88 YSPFVDREDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVRFIPTEKN---DIHEVG 144
Query: 159 PPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKS--FANNN 216
P +E +++ + + I RV +DG+ YY E +++ +A +
Sbjct: 145 PMEEVVYDLVKHKFA-------APNQVATIYDMKERV-EDGKNYYTFEYGLRTPIYATTS 196
Query: 217 ELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSFRVNK 276
+ + V NNR Y L + E + + + L+ V DS ++ +
Sbjct: 197 -------------------FATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKILQ 237
Query: 277 V 277
+
Sbjct: 238 I 238
>sp|P82796|TL22_SPIOL Thylakoid lumenal 22 kDa protein (Fragment) OS=Spinacia oleracea
PE=1 SV=1
Length = 20
Score = 36.6 bits (83), Expect = 0.19, Method: Composition-based stats.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 94 QQSVGFREYIDTFDGYSFKY 113
+QS GFREYID FDGYS Y
Sbjct: 1 EQSAGFREYIDFFDGYSLTY 20
>sp|P82337|UT019_PEA Unknown protein from spot 19 of 2D-PAGE of thylakoid (Fragments)
OS=Pisum sativum PE=1 SV=1
Length = 33
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 19/26 (73%)
Query: 200 RLYYLVEVNIKSFANNNELAVMPKDR 225
LYY VE N KS+A+NNELAV P R
Sbjct: 8 ELYYQVEANNKSYASNNELAVFPDQR 33
>sp|Q8VY52|PPD2_ARATH PsbP domain-containing protein 2, chloroplastic OS=Arabidopsis
thaliana GN=PPD2 PE=1 SV=1
Length = 232
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 32/204 (15%)
Query: 73 MALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDP 132
+ L + + F+ F N A + + + + Y D+ +G++ P ++ +V AGA+ + +
Sbjct: 51 LNLSILTLFFNGFLLDNKAKSMEEL--QRYTDSNNGFTLLIPSSYTKVEKAGANALFEEL 108
Query: 133 YVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTS 192
N+ V + S R KS++ G P+ K++ R +E+ ++S
Sbjct: 109 NNGSNNIGVVV---SPVRIKSLDQFGSPQFVADKLINA------EKRKESTKEAEVVSVG 159
Query: 193 SRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRL- 251
R A G+ Y E I S +R S V +N+LY L +
Sbjct: 160 ER-AGLGQQVYEFEYKIDSTRGG----------------IKRVFSAAFVSSNKLYLLNVV 202
Query: 252 --QTPENVFVEEEN-DLRQVIDSF 272
PEN L QV+ SF
Sbjct: 203 HSDKPENPLDSSTRMSLEQVLHSF 226
>sp|Q59S63|PUS1_CANAL tRNA pseudouridine synthase 1 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=PUS1 PE=3 SV=1
Length = 450
Score = 32.0 bits (71), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/73 (20%), Positives = 34/73 (46%)
Query: 57 NPVMAATQFAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQN 116
N +T+ +P+ A+ L+L + +F + + T + + F ++ + + KY +
Sbjct: 309 NNFFQSTKINIPKAPALGLLLENPVFDGYNIKLTKSDYEPIDFTKFDKEMNEFKMKYIYD 368
Query: 117 WIQVRGAGADIFY 129
I + +IFY
Sbjct: 369 KIYAEESKENIFY 381
>sp|Q0W4I8|GLMM_UNCMA Probable phosphoglucosamine mutase OS=Uncultured methanogenic
archaeon RC-I GN=glmM PE=3 SV=1
Length = 438
Score = 31.2 bits (69), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 103 IDTFDGYSFKYPQNWIQVRGAGADIFYR-DPYVLDENVSVELSSPSSSRYKSVED 156
I+T DG +YP+ W+ +R +G + R +DE + +L S + S K D
Sbjct: 380 INTLDGVRVEYPEGWVLIRPSGTEPKIRITAEAVDEGAAEKLYSQAESIVKRCID 434
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,464,789
Number of Sequences: 539616
Number of extensions: 3961219
Number of successful extensions: 9967
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 9955
Number of HSP's gapped (non-prelim): 19
length of query: 279
length of database: 191,569,459
effective HSP length: 116
effective length of query: 163
effective length of database: 128,974,003
effective search space: 21022762489
effective search space used: 21022762489
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)