Query 023653
Match_columns 279
No_of_seqs 175 out of 332
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 10:31:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xb3_A PSBP protein; photosynt 100.0 1.2E-39 3.9E-44 277.7 17.6 160 96-275 5-165 (165)
2 1v2b_A 23-kDa polypeptide of p 100.0 5E-40 1.7E-44 284.3 11.4 161 95-275 5-177 (177)
3 2lnj_A SLL1418 protein, putati 100.0 5.9E-40 2E-44 281.6 0.0 158 94-275 9-170 (170)
4 1tu1_A Hypothetical protein PA 98.3 3E-05 1E-09 64.1 16.1 139 99-276 3-143 (148)
5 3lyd_A Uncharacterized protein 97.4 0.007 2.4E-07 51.0 15.2 133 108-276 19-159 (161)
6 3hlz_A Uncharacterized protein 65.8 7.5 0.00026 34.4 4.9 42 101-142 6-47 (269)
7 1ywi_A Formin-binding protein 30.3 26 0.0009 22.1 1.9 20 241-260 19-38 (41)
8 2ysi_A Transcription elongatio 30.1 15 0.00052 23.1 0.7 20 241-260 17-36 (40)
9 1e0l_A Formin binding protein; 24.7 20 0.00068 22.1 0.5 20 241-260 13-32 (37)
10 2pq4_B Periplasmic nitrate red 23.3 74 0.0025 19.5 2.9 12 67-78 3-14 (35)
No 1
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=100.00 E-value=1.2e-39 Score=277.73 Aligned_cols=160 Identities=32% Similarity=0.639 Sum_probs=144.3
Q ss_pred CCCcccceeCCCceEEeccCCceEeccc-ccceEEeCCCCCCccEEEEEeCCCCCCCCccccCCChHHHHHHHHHHHhhh
Q 023653 96 SVGFREYIDTFDGYSFKYPQNWIQVRGA-GADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTE 174 (279)
Q Consensus 96 ~~gf~~y~D~~dgYsf~yP~~W~~~~~~-G~d~~f~d~~~~~~nVsV~i~p~~~~~~~si~dlGspeeva~~ll~~~~~~ 174 (279)
+.||++|.|+.+||+|+||.+|++++++ |+|++|+|+.+..+||+|+|+|++. +++|++||+|++|++.|+++.+++
T Consensus 5 ~~g~~~~~D~~~gysf~~P~~W~~~~~~~g~~v~f~d~~~~~~~v~V~v~p~~~--~~~l~~~G~~e~va~~l~~~~~~~ 82 (165)
T 2xb3_A 5 TSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVAS--TKSLEELGSPEEVGDRLLRNIIAP 82 (165)
T ss_dssp -CCEEEEEETTTTEEEEEETTEEEECCCTTEEEEEEESSCTTSEEEEEEEECSS--CCCSGGGCCHHHHHHHHHHHTTSC
T ss_pred CCCceEEEcCCCCEEEEcCCCCeEecCCCCceEEEECcccCCceEEEEEecCCC--CCChHHcCCHHHHHHHHHHHhhcC
Confidence 5789999999999999999999999997 9999999999989999999999883 789999999999999999988864
Q ss_pred hhhcccCCccccceeecceeeeCCCceEEEEEEEeeccccccccccCCccccccCCcceEEEEEEEEECCEEEEEEeecC
Q 023653 175 FMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTP 254 (279)
Q Consensus 175 ~~st~~g~~~~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~~tv~~gkLYtl~~qa~ 254 (279)
+++++.++|+++.+++ .||++||+|||++++ |++++ +++.||+|+++++.+||||+|++|+|
T Consensus 83 -----~~~~~~~~l~~a~~r~-~~G~~yY~~Ey~~~~----------~~~~~--~~~~rh~l~~~~v~~g~lY~l~~sap 144 (165)
T 2xb3_A 83 -----SESGRSSALIAATSQK-ADDKTYYILEYAVTL----------PGDGN--TAQQRHNLSSIAVSRGKVYTLSVSAP 144 (165)
T ss_dssp -----TTSSCEEEEEEEEEEE-ETTEEEEEEEEEEEC----------C-------CCEEEEEEEEEEETTEEEEEEEEEE
T ss_pred -----CCCCcceEEEEeeeee-cCCceEEEEEEEEec----------CCCcc--CccccEEEEEEEEECCEEEEEEEecC
Confidence 2667899999999997 799999999999988 54222 45899999999999999999999999
Q ss_pred ccccHHhhHHHHHHhcceeee
Q 023653 255 ENVFVEEENDLRQVIDSFRVN 275 (279)
Q Consensus 255 e~~W~k~~~~l~~vv~SFrv~ 275 (279)
|++|+++++.|++|++||+|+
T Consensus 145 e~~w~~~~~~l~~v~~SF~v~ 165 (165)
T 2xb3_A 145 EERWPKVEDQFKTIVSSFTVY 165 (165)
T ss_dssp GGGHHHHHHHHHHHHHTCEEC
T ss_pred HHHhHHHHHHHHHHHhhEEeC
Confidence 999999999999999999985
No 2
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2
Probab=100.00 E-value=5e-40 Score=284.28 Aligned_cols=161 Identities=21% Similarity=0.352 Sum_probs=129.8
Q ss_pred cCCCcccceeCCCceEEeccCCceEec---ccccceEEeCCCCCCccEEEEEeCCCCCCCCccccCCChHH----HHHHH
Q 023653 95 QSVGFREYIDTFDGYSFKYPQNWIQVR---GAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKE----AGRKV 167 (279)
Q Consensus 95 ~~~gf~~y~D~~dgYsf~yP~~W~~~~---~~G~d~~f~d~~~~~~nVsV~i~p~~~~~~~si~dlGspee----va~~l 167 (279)
++.||++|. .|||+|+||.+|++++ .+|+|++|+|+.+..+||+|+|+|++ .++|+|||+|++ |++.|
T Consensus 5 ~~~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~---~~si~dlGspe~~~~~v~~~l 79 (177)
T 1v2b_A 5 TDTDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTD---KKSITDFGSPEQFLSQVDYLL 79 (177)
T ss_dssp --CCEEEEE--CSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECS---CSSGGGGCSHHHHHHHTGGGC
T ss_pred CCCCceEEe--cCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCC---CCChhHCCCHHHHHHHHHHHH
Confidence 467999998 9999999999999755 45999999999999999999999986 589999999999 56677
Q ss_pred HHHHhhhh-hhc---ccCCccccceeecceeeeCCCceEEEEEEEeeccccccccccCCccccccCCcceEEEEEEEEEC
Q 023653 168 LRQYLTEF-MST---RLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVEN 243 (279)
Q Consensus 168 l~~~~~~~-~st---~~g~~~~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~~tv~~ 243 (279)
+++++.+. ++. .+++.++++||++++++ .||++||+|||.+++ |++ +|+.||+|++++|++
T Consensus 80 ~~~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~-~~G~~YY~~E~~~~~----------~~g----~e~~rH~l~~~tv~~ 144 (177)
T 1v2b_A 80 GRQAYSGKTDSEGGFESDAVAIANVLETSTAE-VGGKQYYYLSILTRT----------ADG----NEGGKHQLVTATVND 144 (177)
T ss_dssp ------------------CCCEEEEEEEEEEE-ETTEEEEEEEEEEEC-------------------CCEEEEEEEEEET
T ss_pred HHHhhcccccccCCcccCcccceEEEEeEEEE-eCCeEEEEEEEEEec----------CCC----CccccEEEEEEEEEC
Confidence 77777641 000 12345889999999999 699999999999998 654 578999999999999
Q ss_pred CEEEEEEeecCccccHHh-hHHHHHHhcceeee
Q 023653 244 NRLYELRLQTPENVFVEE-ENDLRQVIDSFRVN 275 (279)
Q Consensus 244 gkLYtl~~qa~e~~W~k~-~~~l~~vv~SFrv~ 275 (279)
||||+|++|++|+||++. ++.|++|++||+|.
T Consensus 145 gkLY~l~~~a~e~~W~k~~~~~l~~v~~SF~v~ 177 (177)
T 1v2b_A 145 GKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 177 (177)
T ss_dssp TEEEEEEEEEEGGGCSTTTTHHHHHHHHTCEEC
T ss_pred CEEEEEEEecCHHHhhhhHHHHHHHHHhheecC
Confidence 999999999999999995 99999999999983
No 3
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}
Probab=100.00 E-value=5.9e-40 Score=281.57 Aligned_cols=158 Identities=28% Similarity=0.489 Sum_probs=145.8
Q ss_pred ccCCCcccceeCCCceEEeccCCceEeccc----ccceEEeCCCCCCccEEEEEeCCCCCCCCccccCCChHHHHHHHHH
Q 023653 94 QQSVGFREYIDTFDGYSFKYPQNWIQVRGA----GADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLR 169 (279)
Q Consensus 94 ~~~~gf~~y~D~~dgYsf~yP~~W~~~~~~----G~d~~f~d~~~~~~nVsV~i~p~~~~~~~si~dlGspeeva~~ll~ 169 (279)
..+.||++|.|+.|||+|+||++|++++++ |+|++|+|+.+..+||+|+|+|++. .++|+|||+|++|+++|++
T Consensus 9 ~~~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~--~~si~d~G~pe~va~~l~~ 86 (170)
T 2lnj_A 9 VGIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPS--DKTLTDLGTATDVGYRFMK 86 (170)
Confidence 346789999999999999999999998877 9999999999999999999999973 5899999999999999999
Q ss_pred HHhhhhhhcccCCccccceeecceeeeCCCceEEEEEEEeeccccccccccCCccccccCCcceEEEEEEEEECCEEEEE
Q 023653 170 QYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYEL 249 (279)
Q Consensus 170 ~~~~~~~st~~g~~~~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~~tv~~gkLYtl 249 (279)
+++++ .++++.++||++.+++ .||++||+|||++++ |+ ++.||+|+++++++|+||+|
T Consensus 87 ~~~~~-----~~~~~~a~li~a~~~~-~~G~~yY~~Ey~~~~----------~~------~~~rh~l~~~~v~~gklY~l 144 (170)
T 2lnj_A 87 TVNDA-----SQGDRQAELINAEARD-EDGQVYYTLEYRVLV----------GD------NVERHDLASVTTNRGKLITF 144 (170)
Confidence 98875 2678899999999997 899999999999987 43 47999999999999999999
Q ss_pred EeecCccccHHhhHHHHHHhcceeee
Q 023653 250 RLQTPENVFVEEENDLRQVIDSFRVN 275 (279)
Q Consensus 250 ~~qa~e~~W~k~~~~l~~vv~SFrv~ 275 (279)
++|+||++|++.++.|++|++||+|+
T Consensus 145 ~~~ape~~w~~~~~~l~~v~~SF~v~ 170 (170)
T 2lnj_A 145 DLSTAEDRWDTVKSLFDTVASSFHVY 170 (170)
Confidence 99999999999999999999999985
No 4
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=98.32 E-value=3e-05 Score=64.13 Aligned_cols=139 Identities=11% Similarity=0.070 Sum_probs=91.7
Q ss_pred cccceeCCCceEEeccCCceEecccccceEEeCCCCCC--ccEEEEEeCCCCCCCCccccCCChHHHHHHHHHHHhhhhh
Q 023653 99 FREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLD--ENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFM 176 (279)
Q Consensus 99 f~~y~D~~dgYsf~yP~~W~~~~~~G~d~~f~d~~~~~--~nVsV~i~p~~~~~~~si~dlGspeeva~~ll~~~~~~~~ 176 (279)
|..|. .+.++|.+|.+|.... .-+.+....... -|+.|...++.+ . .+.++..++-+++.-..
T Consensus 3 m~~y~--~~Egsl~lP~gw~D~t---~nv~~~~~~~~~g~~~lvIsR~~~~~--~------~~l~~~~~~q~~~l~~~-- 67 (148)
T 1tu1_A 3 MTLYR--LHEADLEIPDAWQDQS---INIFKLPASGPAREASFVISRDASQG--D------APFADYVARQLENAEKQ-- 67 (148)
T ss_dssp EEEEE--CSSEEEEEETTSEECC---BEEEEECCBTTBCCEEEEEEEECCCT--T------SCHHHHHHHHHHHHHHH--
T ss_pred CceEE--ECCEEEeCCCCcEeee---EEEEEcCCCCCCCceEEEEEeccCCC--C------CCHHHHHHHHHHHHHhh--
Confidence 55665 7889999999999533 223332221111 455555555442 1 24444444443333221
Q ss_pred hcccCCccccceeecceeeeCCCceEEEEEEEeeccccccccccCCccccccCCcceEEEEEEEEECCEEEEEEeecCcc
Q 023653 177 STRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPEN 256 (279)
Q Consensus 177 st~~g~~~~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~~tv~~gkLYtl~~qa~e~ 256 (279)
...-.++.....+ .+|.+--.+||.-.. .+..+|.+-++.+..+++|.++.+++..
T Consensus 68 ------l~~y~~~~~~~~~-l~g~~a~~~e~~~~~-----------------~g~~~~Q~q~~~~~~~~~l~~t~t~~~~ 123 (148)
T 1tu1_A 68 ------LPGFKLHKRWDIN-IHGHAAVLLDYQWQR-----------------EGRDLMLRQVFIERRPAVLITTLTTTPA 123 (148)
T ss_dssp ------STTCEEEEEEEEE-ETTEEEEEEEEEEEE-----------------TTEEEEEEEEEECCSSSEEEEEEEECGG
T ss_pred ------CcCcEEeeeEeEE-EcCCcEEEEEEEEcc-----------------CCEEEEEEEEEEEECCeEEEEEEEcCCC
Confidence 1123344433333 478888888888875 2467999999999877999999999999
Q ss_pred ccHHhhHHHHHHhcceeeee
Q 023653 257 VFVEEENDLRQVIDSFRVNK 276 (279)
Q Consensus 257 ~W~k~~~~l~~vv~SFrv~~ 276 (279)
.|+..++.++.|++||+.-.
T Consensus 124 ~~~~~~~~~~~i~~Sf~~~~ 143 (148)
T 1tu1_A 124 DLPHHEPAWKQAMQTLVPRP 143 (148)
T ss_dssp GHHHHHHHHHHHHHTCEECC
T ss_pred CCHHHHHHHHHHHHhcccCC
Confidence 99999999999999999753
No 5
>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}
Probab=97.39 E-value=0.007 Score=50.98 Aligned_cols=133 Identities=13% Similarity=0.100 Sum_probs=86.0
Q ss_pred ceEEeccCCceEecccccceEEeCCC-C--CCccEEEEEeCCCCCCCCccccCCChHHHHHHHHHHHhhhhhhcccCCcc
Q 023653 108 GYSFKYPQNWIQVRGAGADIFYRDPY-V--LDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRR 184 (279)
Q Consensus 108 gYsf~yP~~W~~~~~~G~d~~f~d~~-~--~~~nVsV~i~p~~~~~~~si~dlGspeeva~~ll~~~~~~~~st~~g~~~ 184 (279)
++++-.|.+|......|.-+...+.. . -.-|+-|++.-... |+ .|+ +..=+.++.+. -.
T Consensus 19 ~~~v~~P~gWe~~~~~~~~~~~~~~~~~~~F~pN~vVtv~r~~~-------~~--~e~-~r~el~~~~~~--------lp 80 (161)
T 3lyd_A 19 GFTVPIPETWQPDPTMGTQFAARPHTPPQGFTPNIIGTVRRAAT-------GA--LHN-QRTELDQRATQ--------LP 80 (161)
T ss_dssp EEEEECCTTEEECTTSSSSEEEEESSCCSSSCCEEEEEEEEECT-------TH--HHH-HHHHHHHHHTT--------ST
T ss_pred eeeccCCCCceEcCCCCceEEeccCCCCCCccccEEEEEEecCc-------HH--HHH-HHHHHHHHHhh--------CC
Confidence 48999999999987666544333222 1 33588888776552 22 232 23333444331 11
Q ss_pred ccceeecceeeeCCCceEEEEEEEeeccccccccccCCccccccCCcceE---EEEEEEEECCEEEEE--EeecCccccH
Q 023653 185 ESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRR---YLSVLGVENNRLYEL--RLQTPENVFV 259 (279)
Q Consensus 185 ~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH---~l~~~tv~~gkLYtl--~~qa~e~~W~ 259 (279)
.-++++-...+ .+|.+-|..||.-.. | +.+.+ ...++...++..|.+ ++++.+.+-+
T Consensus 81 ~~~~~~r~~~~-~~G~pa~~iey~y~~----------~-------~~g~~aq~~~~vvve~~~v~~vv~lt~T~~~~q~~ 142 (161)
T 3lyd_A 81 DYAERGRTETT-VDGFPAYHIEYAYRH----------H-------GTITIAQMITLVEVSHPHAVDIIQLTATCAGDQTA 142 (161)
T ss_dssp TCEEEEEEEEE-ETTEEEEEEEEEEEE----------T-------TTEEEEEEEEEEEEECSSCEEEEEEEEEEEGGGHH
T ss_pred CcEeecccccc-cCCcccEEEEEEEec----------C-------CCceEeeEEEEEEEecCCEEEEEEEEEEeccccch
Confidence 23344433334 799999999999654 3 23445 234444456777777 9999999999
Q ss_pred HhhHHHHHHhcceeeee
Q 023653 260 EEENDLRQVIDSFRVNK 276 (279)
Q Consensus 260 k~~~~l~~vv~SFrv~~ 276 (279)
...+.++.|++||++..
T Consensus 143 ~~~~d~q~iv~sl~v~p 159 (161)
T 3lyd_A 143 DYWDTFRLMHADLTVQP 159 (161)
T ss_dssp HHHHHHHHHHHTCEEET
T ss_pred HHHHHHHHHhheeEecc
Confidence 99999999999999974
No 6
>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=65.78 E-value=7.5 Score=34.43 Aligned_cols=42 Identities=19% Similarity=0.521 Sum_probs=32.2
Q ss_pred cceeCCCceEEeccCCceEecccccceEEeCCCCCCccEEEE
Q 023653 101 EYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVE 142 (279)
Q Consensus 101 ~y~D~~dgYsf~yP~~W~~~~~~G~d~~f~d~~~~~~nVsV~ 142 (279)
-|..++-=|+..||.+|.+.+-.---..|.+|..=..|+.+.
T Consensus 6 k~ISPgaWfs~~yP~~W~EfEd~E~sflFynp~~WtGNfRIS 47 (269)
T 3hlz_A 6 KFISPGAWFSMNYPSDWNEFEDGEGSFLFYNPDVWTGNFRIS 47 (269)
T ss_dssp EEECGGGCEEEEECTTCEEECCCTTEEEEECSSSCCCEEEEE
T ss_pred eeecCCceeEEecCCCcccccCCCCceeeeChhhcccceEEE
Confidence 466667779999999999987544446888998777777664
No 7
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=30.35 E-value=26 Score=22.09 Aligned_cols=20 Identities=15% Similarity=0.297 Sum_probs=18.1
Q ss_pred EECCEEEEEEeecCccccHH
Q 023653 241 VENNRLYELRLQTPENVFVE 260 (279)
Q Consensus 241 v~~gkLYtl~~qa~e~~W~k 260 (279)
..+|+.|-.|..+.+.+|++
T Consensus 19 ~~~G~~YYyN~~T~eS~We~ 38 (41)
T 1ywi_A 19 SPDGRTYYYNTETKQSTWEK 38 (41)
T ss_dssp ETTTEEEEEETTTTEEEESC
T ss_pred CCCCCEEEEECCCCCEEeCC
Confidence 45899999999999999986
No 8
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=30.07 E-value=15 Score=23.13 Aligned_cols=20 Identities=15% Similarity=0.390 Sum_probs=18.3
Q ss_pred EECCEEEEEEeecCccccHH
Q 023653 241 VENNRLYELRLQTPENVFVE 260 (279)
Q Consensus 241 v~~gkLYtl~~qa~e~~W~k 260 (279)
..+|+.|-.|..+.+.+|++
T Consensus 17 ~~~G~~YYyN~~T~eS~We~ 36 (40)
T 2ysi_A 17 TPDGKVYYYNARTRESAWTK 36 (40)
T ss_dssp CTTSCEEEEETTTCCEESSC
T ss_pred CCCCCEEEEECCCCCEEeCC
Confidence 56899999999999999986
No 9
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=24.67 E-value=20 Score=22.07 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=17.9
Q ss_pred EECCEEEEEEeecCccccHH
Q 023653 241 VENNRLYELRLQTPENVFVE 260 (279)
Q Consensus 241 v~~gkLYtl~~qa~e~~W~k 260 (279)
..+|+.|-.|..+.+.+|++
T Consensus 13 ~~~G~~YYyN~~T~es~We~ 32 (37)
T 1e0l_A 13 TADGKTYYYNNRTLESTWEK 32 (37)
T ss_dssp CTTSCEEEEETTTTEEESSC
T ss_pred CCCCCEEEEECCCCCEEecC
Confidence 46799999999999999986
No 10
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=23.26 E-value=74 Score=19.51 Aligned_cols=12 Identities=25% Similarity=0.221 Sum_probs=9.3
Q ss_pred chhHHHHHHHHH
Q 023653 67 VPRRNAMALILS 78 (279)
Q Consensus 67 ~~RR~~l~~~~s 78 (279)
++||++|-+.++
T Consensus 3 lsRR~FLK~~aa 14 (35)
T 2pq4_B 3 LSRRSFMKANAV 14 (35)
T ss_dssp CCSHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 689999986544
Done!