BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023654
(279 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UBN7|HDAC6_HUMAN Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2
Length = 1215
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 64/111 (57%), Gaps = 4/111 (3%)
Query: 160 SVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQH 219
+V L C HLVA A + + PC C + NW+CL C +V C RY+N HMLQH
Sbjct: 1106 AVTPLPWCPHLVAVCPIPAAGL-DVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQH 1164
Query: 220 YQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAYVLKFGRALP 270
+ + H + L Y DLS WC+ C AY++ QA+L ++ + A+ KFG +P
Sbjct: 1165 HGNSGHPLVLSYIDLSAWCYYCQAYVHHQALLDVKNI---AHQNKFGEDMP 1212
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 11 NGPEDEDEMMIGGELGW--------VRHLASCDHLVASLSSDLARIPTPDTPCNMCKHPR 62
G + D M++ G G V L C HLVA A + PC C +
Sbjct: 1082 GGQDMADSMLMQGSRGLTDQAIFYAVTPLPWCPHLVAVCPIPAAGLDVTQ-PCGDCGTIQ 1140
Query: 63 GNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYLNAQAILQLRP 122
NW+CL C +V C RY+N HML+H+ H + L Y DLS WC+ C AY++ QA+L ++
Sbjct: 1141 ENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQAYVHHQALLDVKN 1200
Query: 123 VHETSYVLKFGRALP 137
+ ++ KFG +P
Sbjct: 1201 I---AHQNKFGEDMP 1212
>sp|Q9Z2V5|HDAC6_MOUSE Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=3
Length = 1149
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
Query: 160 SVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQH 219
+V L+ C HL+A A + + PC C + NW+CL C +V CSRYVN HM+ H
Sbjct: 1040 AVTPLSWCPHLMAVCPIPAAGL-DVSQPCKTCGTVQENWVCLTCYQVYCSRYVNAHMVCH 1098
Query: 220 YQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAYVLKFGRALP 270
++ + H + L DLS WC+ C AY++ + LQ V A+ KFG +P
Sbjct: 1099 HEASEHPLVLSCVDLSTWCYVCQAYVHHE---DLQDVKNAAHQNKFGEDMP 1146
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 28 VRHLASCDHLVASLSSDLARIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHY 87
V L+ C HL+A A + PC C + NW+CL C +V CSRYVN HM+ H+
Sbjct: 1041 VTPLSWCPHLMAVCPIPAAGLDV-SQPCKTCGTVQENWVCLTCYQVYCSRYVNAHMVCHH 1099
Query: 88 REKNHSVALDYSDLSVWCFACHAYLNAQAILQLRPVHETSYVLKFGRALP 137
H + L DLS WC+ C AY++ + L+ V ++ KFG +P
Sbjct: 1100 EASEHPLVLSCVDLSTWCYVCQAYVHHE---DLQDVKNAAHQNKFGEDMP 1146
>sp|Q20296|HDA6_CAEEL Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2
Length = 955
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 95/226 (42%), Gaps = 39/226 (17%)
Query: 72 EVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYLNAQAILQLRPVHETSY-VL 130
+ +C N+ MLR RE+ A + C + I ++ V + + +L
Sbjct: 741 QAVCEVLQNRSMLRRLREEKEQFATKPQKIESSCI--------KTIREVCAVQQKYWSIL 792
Query: 131 KFGRALPFNTG--------------------------QHPKVKEDDEMMLGAESGSVRHL 164
K + P N G + + E+M + +V L
Sbjct: 793 KGFQVTPSNYGLDIDDEAYDDDSIDMADQSSSSGSSSSSTRPSHNLEIMDSGPAHAVVPL 852
Query: 165 TSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETN 224
+C HL A+I N T C+ CQ W CL C + C R+VN+H + H+ ++
Sbjct: 853 ATCPHLKEVKPLPPAKI-NARTACSECQIGAEVWTCLTCYKYNCGRFVNEHAMMHHLSSS 911
Query: 225 HSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAYVLKFGRALP 270
H +AL +DLSVWC+ C +Y++ A++ + A+ KFG +P
Sbjct: 912 HPMALSMADLSVWCYPCDSYVHNPALIGAK---SAAHESKFGETMP 954
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 6/121 (4%)
Query: 18 EMMIGGELGWVRHLASCDHLVASLSSDLARIPTPDTPCNMCKHPRGNWLCLCCKEVLCSR 77
E+M G V LA+C HL A+I T C+ C+ W CL C + C R
Sbjct: 839 EIMDSGPAHAVVPLATCPHLKEVKPLPPAKI-NARTACSECQIGAEVWTCLTCYKYNCGR 897
Query: 78 YVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYLNAQAILQLR-PVHETSYVLKFGRAL 136
+VN+H + H+ +H +AL +DLSVWC+ C +Y++ A++ + HE+ KFG +
Sbjct: 898 FVNEHAMMHHLSSSHPMALSMADLSVWCYPCDSYVHNPALIGAKSAAHES----KFGETM 953
Query: 137 P 137
P
Sbjct: 954 P 954
>sp|Q54QE6|SIR2A_DICDI NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum
GN=sir2A PE=2 SV=1
Length = 512
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 186 TPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYL 245
T C+ C NW+C+ C V CSR+VN H +H++ T H ++ +SD S WC+ C Y+
Sbjct: 32 TKCHACNDESENWICMTCGVVSCSRHVNGHAGEHFENTKHPISASFSDHSFWCYTCDTYV 91
Query: 246 NAQAILQLQPVHE 258
+ + + + E
Sbjct: 92 HNTPLFDICEILE 104
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 53 TPCNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYL 112
T C+ C NW+C+ C V CSR+VN H H+ H ++ +SD S WC+ C Y+
Sbjct: 32 TKCHACNDESENWICMTCGVVSCSRHVNGHAGEHFENTKHPISASFSDHSFWCYTCDTYV 91
Query: 113 NAQAILQL 120
+ + +
Sbjct: 92 HNTPLFDI 99
>sp|Q8C2S0|UBP44_MOUSE Ubiquitin carboxyl-terminal hydrolase 44 OS=Mus musculus GN=Usp44
PE=2 SV=3
Length = 711
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 55 CNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAY-LN 113
C +C W CL C V C +Y+ +H L+H++E +H VA + +D+ +C+ C+ Y LN
Sbjct: 26 CMVCNTTESIWACLSCSHVACGKYIQEHALKHFQESSHPVAFEVNDMYAFCYLCNDYVLN 85
Query: 114 AQAILQLRPVHETSYVLKFGR---ALPFNTGQHPKVKED 149
A L+ + T +K + +P ++ HP +D
Sbjct: 86 DNAAGDLKSLRSTLSTIKSKKYPCVVPSDSVLHPVDAQD 124
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 188 CNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAY-LN 246
C C W CL C V C +Y+ +H L+H+QE++H VA +D+ +C+ C+ Y LN
Sbjct: 26 CMVCNTTESIWACLSCSHVACGKYIQEHALKHFQESSHPVAFEVNDMYAFCYLCNDYVLN 85
Query: 247 AQAILQLQPVHETAYVLK 264
A L+ + T +K
Sbjct: 86 DNAAGDLKSLRSTLSTIK 103
>sp|Q9H0E7|UBP44_HUMAN Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens GN=USP44
PE=1 SV=2
Length = 712
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 188 CNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAY-LN 246
C C W CL C V C RY+ +H L+H+QE++H VAL +++ V+C+ C Y LN
Sbjct: 29 CVDCNTTESIWACLSCSHVACGRYIEEHALKHFQESSHPVALEVNEMYVFCYLCDDYVLN 88
Query: 247 AQAILQLQPVHETAYVLK 264
L+ + T +K
Sbjct: 89 DNTTGDLKLLRRTLSAIK 106
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Query: 31 LASCDHLVA-SLSSDLARIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYRE 89
+ +C H+ L+ D + + C C W CL C V C RY+ +H L+H++E
Sbjct: 4 MDTCKHVGQLQLAQDHSSLNPQKWHCVDCNTTESIWACLSCSHVACGRYIEEHALKHFQE 63
Query: 90 KNHSVALDYSDLSVWCFACHAY-LNAQAILQLRPVHETSYVLK 131
+H VAL+ +++ V+C+ C Y LN L+ + T +K
Sbjct: 64 SSHPVALEVNEMYVFCYLCDDYVLNDNTTGDLKLLRRTLSAIK 106
>sp|D2HBJ8|UBP44_AILME Ubiquitin carboxyl-terminal hydrolase 44 OS=Ailuropoda melanoleuca
GN=USP44 PE=3 SV=1
Length = 711
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 188 CNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYL-- 245
C C W CL C V C RY+ +H L+H+QE++H VAL +++ V+C+ C Y+
Sbjct: 29 CVDCNTTESIWACLSCSHVACGRYIEEHALKHFQESSHPVALEVNEMYVFCYLCDDYVLN 88
Query: 246 -NAQAILQL 253
NA L+L
Sbjct: 89 DNATGDLKL 97
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 55 CNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYL-- 112
C C W CL C V C RY+ +H L+H++E +H VAL+ +++ V+C+ C Y+
Sbjct: 29 CVDCNTTESIWACLSCSHVACGRYIEEHALKHFQESSHPVALEVNEMYVFCYLCDDYVLN 88
Query: 113 -NAQAILQL 120
NA L+L
Sbjct: 89 DNATGDLKL 97
>sp|Q7ZUM8|UBP44_DANRE Ubiquitin carboxyl-terminal hydrolase 44 OS=Danio rerio GN=usp44
PE=2 SV=1
Length = 695
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 55 CNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAY-LN 113
C C W CL C V C RY+ +H L+H++E++H +AL+ ++L V+C+ C Y LN
Sbjct: 26 CVDCNTTESVWACLSCSHVACGRYIEEHALQHFKEQHHPLALEVNELYVYCYLCDDYVLN 85
Query: 114 AQAILQLRPVHETSYVLK 131
A L+ + T +K
Sbjct: 86 DNATGDLKLLRSTLSAIK 103
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 188 CNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAY-LN 246
C C W CL C V C RY+ +H LQH++E +H +AL ++L V+C+ C Y LN
Sbjct: 26 CVDCNTTESVWACLSCSHVACGRYIEEHALQHFKEQHHPLALEVNELYVYCYLCDDYVLN 85
Query: 247 AQAILQLQPVHETAYVLK 264
A L+ + T +K
Sbjct: 86 DNATGDLKLLRSTLSAIK 103
>sp|Q6P9L4|UBP49_MOUSE Ubiquitin carboxyl-terminal hydrolase 49 OS=Mus musculus GN=Usp49
PE=2 SV=1
Length = 685
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 188 CNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYL 245
C +C W CL C V C RY+ H L+H++ET H +A+ DL V+C+ C Y+
Sbjct: 26 CLQCATTESAWACLKCSHVACGRYIEDHALKHFEETGHPLAMEVRDLYVFCYLCKDYV 83
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 55 CNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYL 112
C C W CL C V C RY+ H L+H+ E H +A++ DL V+C+ C Y+
Sbjct: 26 CLQCATTESAWACLKCSHVACGRYIEDHALKHFEETGHPLAMEVRDLYVFCYLCKDYV 83
>sp|Q5XGZ2|UP44B_XENLA Ubiquitin carboxyl-terminal hydrolase 44-B OS=Xenopus laevis
GN=usp44-b PE=2 SV=1
Length = 690
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 55 CNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAY-LN 113
C C W CL C V C RY+ +H LRH+++ H +AL+ ++L V+C+ C Y LN
Sbjct: 26 CVDCNTTESVWACLSCSHVACGRYIEEHALRHFQDSKHPLALEVNELYVFCYLCDDYVLN 85
Query: 114 AQAILQLRPVHETSYVLK 131
L+ + T +K
Sbjct: 86 DNTTGDLKLLRSTLSAIK 103
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 188 CNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAY-LN 246
C C W CL C V C RY+ +H L+H+Q++ H +AL ++L V+C+ C Y LN
Sbjct: 26 CVDCNTTESVWACLSCSHVACGRYIEEHALRHFQDSKHPLALEVNELYVFCYLCDDYVLN 85
Query: 247 AQAILQLQPVHETAYVLK 264
L+ + T +K
Sbjct: 86 DNTTGDLKLLRSTLSAIK 103
>sp|Q0V9G5|UBP44_XENTR Ubiquitin carboxyl-terminal hydrolase 44 OS=Xenopus tropicalis
GN=usp44 PE=2 SV=1
Length = 652
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 55 CNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAY-LN 113
C C W CL C V C RY+ +H LRH+++ H +AL+ ++L V+C+ C Y LN
Sbjct: 26 CVDCNTTESVWACLSCSHVACGRYIEEHALRHFQDSKHPLALEVNELYVFCYLCDDYVLN 85
Query: 114 AQAILQLRPVHETSYVLK 131
L+ + T +K
Sbjct: 86 DNTTGDLKLLRSTLSAIK 103
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 188 CNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAY-LN 246
C C W CL C V C RY+ +H L+H+Q++ H +AL ++L V+C+ C Y LN
Sbjct: 26 CVDCNTTESVWACLSCSHVACGRYIEEHALRHFQDSKHPLALEVNELYVFCYLCDDYVLN 85
Query: 247 AQAILQLQPVHETAYVLK 264
L+ + T +K
Sbjct: 86 DNTTGDLKLLRSTLSAIK 103
>sp|Q6NTR6|UP44A_XENLA Ubiquitin carboxyl-terminal hydrolase 44-A OS=Xenopus laevis
GN=usp44-a PE=2 SV=1
Length = 690
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 55 CNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAY-LN 113
C C W CL C V C RY+ +H LRH+++ H +AL+ ++L V+C+ C Y LN
Sbjct: 26 CVDCNTTESVWACLSCSHVACGRYIEEHALRHFQDSKHPLALEVNELYVFCYLCDDYVLN 85
Query: 114 AQAILQLRPVHETSYVLK 131
L+ + T +K
Sbjct: 86 DNTTGDLKLLRSTLSAIK 103
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 188 CNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAY-LN 246
C C W CL C V C RY+ +H L+H+Q++ H +AL ++L V+C+ C Y LN
Sbjct: 26 CVDCNTTESVWACLSCSHVACGRYIEEHALRHFQDSKHPLALEVNELYVFCYLCDDYVLN 85
Query: 247 AQAILQLQPVHETAYVLK 264
L+ + T +K
Sbjct: 86 DNTTGDLKLLRSTLSAIK 103
>sp|Q70CQ1|UBP49_HUMAN Ubiquitin carboxyl-terminal hydrolase 49 OS=Homo sapiens GN=USP49
PE=2 SV=1
Length = 688
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 188 CNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYL 245
C C W CL C V C RY+ H L+H++ET H +A+ DL V+C+ C Y+
Sbjct: 26 CLECATTESVWACLKCSHVACGRYIEDHALKHFEETGHPLAMEVRDLYVFCYLCKDYV 83
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 55 CNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYL 112
C C W CL C V C RY+ H L+H+ E H +A++ DL V+C+ C Y+
Sbjct: 26 CLECATTESVWACLKCSHVACGRYIEDHALKHFEETGHPLAMEVRDLYVFCYLCKDYV 83
>sp|Q99MP8|BRAP_MOUSE BRCA1-associated protein OS=Mus musculus GN=Brap PE=1 SV=1
Length = 591
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 182 PNPDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFAC 241
P + C C W+CL C + C RYV++H +H++ET H+ A+ ++ VW +A
Sbjct: 310 PVEENKCFECGVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTYAMQLTNHRVWDYAG 369
Query: 242 HAYL 245
Y+
Sbjct: 370 DNYV 373
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 49 PTPDTPCNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFAC 108
P + C C W+CL C + C RYV++H +H+ E H+ A+ ++ VW +A
Sbjct: 310 PVEENKCFECGVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTYAMQLTNHRVWDYAG 369
Query: 109 HAYL 112
Y+
Sbjct: 370 DNYV 373
>sp|Q7Z569|BRAP_HUMAN BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=2
Length = 592
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 182 PNPDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFAC 241
P + C C W+CL C + C RYV++H +H++ET H+ A+ ++ VW +A
Sbjct: 311 PVEENKCFECGVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTYAMQLTNHRVWDYAG 370
Query: 242 HAYL 245
Y+
Sbjct: 371 DNYV 374
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 49 PTPDTPCNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFAC 108
P + C C W+CL C + C RYV++H +H+ E H+ A+ ++ VW +A
Sbjct: 311 PVEENKCFECGVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTYAMQLTNHRVWDYAG 370
Query: 109 HAYL 112
Y+
Sbjct: 371 DNYV 374
>sp|Q9Y6I4|UBP3_HUMAN Ubiquitin carboxyl-terminal hydrolase 3 OS=Homo sapiens GN=USP3
PE=1 SV=2
Length = 520
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 23/135 (17%)
Query: 34 CDHLVAS--LSSDLARIPTPDTP---CNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYR 88
C HL +S ++ D A+ P C++C+ + W+CL C V C RYVN H +HY
Sbjct: 3 CPHLSSSVCIAPDSAKFPNGSPSSWCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKHYE 62
Query: 89 EK----------------NHSVALDYSDLSVWCFACHAYLNAQAILQLRPVHETSYVLKF 132
+ H+V +D S S +C+ C ++ L L V + L+
Sbjct: 63 DAQVPLTNHKKSEKQDKVQHTVCMDCSSYSTYCYRCDDFVVNDTKLGL--VQKVREHLQN 120
Query: 133 GRALPFNTGQHPKVK 147
F +H K K
Sbjct: 121 LENSAFTADRHKKRK 135
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 22/114 (19%)
Query: 167 CDHLVAS--LSTDLARIPNPDTP---CNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQ 221
C HL +S ++ D A+ PN C+ C+ + W+CL C V C RYVN H +HY+
Sbjct: 3 CPHLSSSVCIAPDSAKFPNGSPSSWCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKHYE 62
Query: 222 E----------------TNHSVALGYSDLSVWCFACHAY-LNAQAILQLQPVHE 258
+ H+V + S S +C+ C + +N + +Q V E
Sbjct: 63 DAQVPLTNHKKSEKQDKVQHTVCMDCSSYSTYCYRCDDFVVNDTKLGLVQKVRE 116
>sp|Q91W36|UBP3_MOUSE Ubiquitin carboxyl-terminal hydrolase 3 OS=Mus musculus GN=Usp3
PE=2 SV=1
Length = 520
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 21/108 (19%)
Query: 34 CDHLVAS--LSSDLARIPTPDTP---CNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYR 88
C HL +S ++ D A+ P C++C+ + W+CL C V C RYVN H +HY
Sbjct: 3 CPHLSSSVCIAPDSAKFPNGSPSSWCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKHYE 62
Query: 89 E----------------KNHSVALDYSDLSVWCFACHAYLNAQAILQL 120
+ H+V +D S S +C+ C ++ L L
Sbjct: 63 DAQIPLLNHKRSEKQEKAQHTVCMDCSSYSTYCYRCDDFVVNDTKLGL 110
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 22/114 (19%)
Query: 167 CDHLVAS--LSTDLARIPNPDTP---CNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQ 221
C HL +S ++ D A+ PN C+ C+ + W+CL C V C RYVN H +HY+
Sbjct: 3 CPHLSSSVCIAPDSAKFPNGSPSSWCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKHYE 62
Query: 222 E----------------TNHSVALGYSDLSVWCFACHAY-LNAQAILQLQPVHE 258
+ H+V + S S +C+ C + +N + +Q V E
Sbjct: 63 DAQIPLLNHKRSEKQEKAQHTVCMDCSSYSTYCYRCDDFVVNDTKLGLVQKVRE 116
>sp|P38748|ETP1_YEAST RING finger protein ETP1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ETP1 PE=1 SV=1
Length = 585
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%)
Query: 55 CNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYL 112
C C W+CL C V C RY +KH ++HY E H A+D VW +A Y+
Sbjct: 301 CATCGSTDNLWICLICGNVGCGRYNSKHAIKHYEETLHCFAMDIRTQRVWDYAGDNYV 358
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 167 CDHLVASLSTD-LARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNH 225
C H LS + L + C C W+CL C V C RY +KH ++HY+ET H
Sbjct: 279 CRHSSLRLSRESLLKQAGDSAHCATCGSTDNLWICLICGNVGCGRYNSKHAIKHYEETLH 338
Query: 226 SVALGYSDLSVWCFACHAYL 245
A+ VW +A Y+
Sbjct: 339 CFAMDIRTQRVWDYAGDNYV 358
>sp|Q95QN6|YQOE_CAEEL Uncharacterized RING finger protein EEED8.16 OS=Caenorhabditis
elegans GN=EEED8.16 PE=4 SV=1
Length = 590
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 188 CNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYL 245
CN C W+CL C + C RY +H +H++ T+H+ +L VW +A Y+
Sbjct: 310 CNDCGMSNDLWICLICGNIGCGRYAEQHAQRHWELTSHTYSLKVGGERVWDYAGDNYV 367
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 55 CNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYL 112
CN C W+CL C + C RY +H RH+ +H+ +L VW +A Y+
Sbjct: 310 CNDCGMSNDLWICLICGNIGCGRYAEQHAQRHWELTSHTYSLKVGGERVWDYAGDNYV 367
>sp|Q11119|UBP14_SCHPO Ubiquitin carboxyl-terminal hydrolase 14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ubp14 PE=1 SV=2
Length = 775
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 14/92 (15%)
Query: 163 HLTSCDHLVASLSTDLARIPNPDTP-CNRCQHPRGNWLCLCCKEVLCSR------YVNKH 215
LT+CDH++ +L + + N D C++C W+CL C + C R N H
Sbjct: 149 ELTTCDHII-NLPENETYVTNLDNATCSKCDLAENLWMCLTCGALSCGRKQYGGGGGNGH 207
Query: 216 MLQHYQETNHSVALGYSDLS------VWCFAC 241
L HY +T H +A+ +S ++C++C
Sbjct: 208 ALSHYDDTGHPLAVKLKSISPDGQADIYCYSC 239
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 12/95 (12%)
Query: 26 GWVRHLASCDHLVASLSSDLARIPTPDTPCNMCKHPRGNWLCLCCKEVLCSR------YV 79
W L +CDH++ ++ + C+ C W+CL C + C R
Sbjct: 145 AWENELTTCDHIINLPENETYVTNLDNATCSKCDLAENLWMCLTCGALSCGRKQYGGGGG 204
Query: 80 NKHMLRHYREKNHSVALDYSDLS------VWCFAC 108
N H L HY + H +A+ +S ++C++C
Sbjct: 205 NGHALSHYDDTGHPLAVKLKSISPDGQADIYCYSC 239
>sp|O13747|EPT1_SCHPO RING finger protein ETP1 homolog OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC16E8.13 PE=3 SV=1
Length = 547
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 186 TPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYL 245
+ C C + + W+CL C + C RY + H QHY +T H A+ VW +A Y+
Sbjct: 260 SKCTVCCYDKDLWICLICGNIGCGRYHDAHAKQHYVDTAHCYAMELETQRVWDYAGDNYV 319
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 53 TPCNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYL 112
+ C +C + + W+CL C + C RY + H +HY + H A++ VW +A Y+
Sbjct: 260 SKCTVCCYDKDLWICLICGNIGCGRYHDAHAKQHYVDTAHCYAMELETQRVWDYAGDNYV 319
>sp|F1QFS9|UBP13_DANRE Ubiquitin carboxyl-terminal hydrolase 13 OS=Danio rerio GN=usp13
PE=2 SV=1
Length = 860
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 180 RIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYV------NKHMLQHYQETNHSVALGYSD 233
RIP C +C+ WL L VLC ++ N H L+HY+E+N +A+ +
Sbjct: 184 RIPPSGWKCAKCEMRENLWLNLTDGSVLCGKWFFDGSGGNGHALEHYRESNFPLAVKLNT 243
Query: 234 LSVWCFACHAYLNAQAILQLQPVHETAYVLKFG 266
++ +++ +A+L H + ++L FG
Sbjct: 244 ITPDGADIYSFDEEEAVLD---PHISEHLLHFG 273
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 14/116 (12%)
Query: 24 ELGWVRHLASCDHLVASLSSDLARIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRYV---- 79
E+ RH S L + RIP C C+ WL L VLC ++
Sbjct: 166 EIQVSRHARSLRQL-----DNGVRIPPSGWKCAKCEMRENLWLNLTDGSVLCGKWFFDGS 220
Query: 80 --NKHMLRHYREKNHSVALDYSDLSVWCFACHAYLNAQAILQLRPVHETSYVLKFG 133
N H L HYRE N +A+ + ++ +++ +A+L H + ++L FG
Sbjct: 221 GGNGHALEHYRESNFPLAVKLNTITPDGADIYSFDEEEAVLD---PHISEHLLHFG 273
>sp|A8HAL1|UBP16_DANRE Ubiquitin carboxyl-terminal hydrolase 16 OS=Danio rerio GN=usp16
PE=2 SV=1
Length = 815
Score = 40.4 bits (93), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 65 WLCLCCKEVLCSRYVNKHMLRHY---REKNHSVALDYSDLSVWCFACHAYLNAQAILQL 120
W+CL C C R N+H ++HY R + H + L SVWC+ C + + QL
Sbjct: 74 WMCLKCGHRGCGRSGNQHAIKHYETPRSEPHCLVLSLDVWSVWCYICDDEVQYSSTGQL 132
Score = 38.1 bits (87), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 198 WLCLCCKEVLCSRYVNKHMLQHYQETN---HSVALGYSDLSVWCFACHAYLNAQAILQL 253
W+CL C C R N+H ++HY+ H + L SVWC+ C + + QL
Sbjct: 74 WMCLKCGHRGCGRSGNQHAIKHYETPRSEPHCLVLSLDVWSVWCYICDDEVQYSSTGQL 132
>sp|Q8TEY7|UBP33_HUMAN Ubiquitin carboxyl-terminal hydrolase 33 OS=Homo sapiens GN=USP33
PE=1 SV=2
Length = 942
Score = 39.3 bits (90), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 39/99 (39%), Gaps = 14/99 (14%)
Query: 160 SVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGN-WLCL--CCKEVLCSRYVNKHM 216
SV +T D + SL T C C+ N W CL C V C H
Sbjct: 44 SVGEITKEDLIQKSLGT-----------CQDCKVQGPNLWACLENRCSYVGCGESQVDHS 92
Query: 217 LQHYQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQP 255
H QET H + + + L VWC+AC + L QP
Sbjct: 93 TIHSQETKHYLTVNLTTLRVWCYACSKEVFLDRKLGTQP 131
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 55 CNMCKHPRGN-WLCL--CCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAY 111
C CK N W CL C V C H H +E H + ++ + L VWC+AC
Sbjct: 61 CQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYACSKE 120
Query: 112 LNAQAILQLRP 122
+ L +P
Sbjct: 121 VFLDRKLGTQP 131
>sp|E1BMF7|UBP13_BOVIN Ubiquitin carboxyl-terminal hydrolase 13 OS=Bos taurus GN=USP13
PE=3 SV=2
Length = 863
Score = 38.1 bits (87), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 180 RIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYV------NKHMLQHYQETNHSVALGYSD 233
RIP C RC WL L VLC ++ N H L+HY++T + +A+
Sbjct: 203 RIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSGGNGHALEHYRDTGYPLAVKLGT 262
Query: 234 LSVWCFACHAYLNAQAIL 251
++ +++ +A+L
Sbjct: 263 ITPDGADVYSFQEEEAVL 280
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 47 RIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRYV------NKHMLRHYREKNHSVALDYSD 100
RIP C C WL L VLC ++ N H L HYR+ + +A+
Sbjct: 203 RIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSGGNGHALEHYRDTGYPLAVKLGT 262
Query: 101 LSVWCFACHAYLNAQAIL 118
++ +++ +A+L
Sbjct: 263 ITPDGADVYSFQEEEAVL 280
>sp|P45974|UBP5_HUMAN Ubiquitin carboxyl-terminal hydrolase 5 OS=Homo sapiens GN=USP5
PE=1 SV=2
Length = 858
Score = 38.1 bits (87), Expect = 0.080, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 156 AESGSVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYV--- 212
A G VR ++ + L ARIP C++C WL L +LC R
Sbjct: 168 AWDGEVRQVSKHAFSLKQLDNP-ARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDG 226
Query: 213 ---NKHMLQHYQETNHSVAL 229
N H ++HY+ET + +A+
Sbjct: 227 SGGNNHAVEHYRETGYPLAV 246
Score = 35.4 bits (80), Expect = 0.45, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 46 ARIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRYV------NKHMLRHYREKNHSVAL 96
ARIP C+ C WL L +LC R N H + HYRE + +A+
Sbjct: 190 ARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAV 246
>sp|Q5R407|UBP5_PONAB Ubiquitin carboxyl-terminal hydrolase 5 OS=Pongo abelii GN=UBP5
PE=2 SV=1
Length = 858
Score = 37.7 bits (86), Expect = 0.085, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 156 AESGSVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYV--- 212
A G VR ++ + L ARIP C++C WL L +LC R
Sbjct: 168 AWDGEVRQVSKHAFSLKQLDNP-ARIPPCGWECSKCDMRENLWLNLTDGSILCGRRYFDG 226
Query: 213 ---NKHMLQHYQETNHSVAL 229
N H ++HY+ET + +A+
Sbjct: 227 SGGNNHAVEHYRETGYPLAV 246
Score = 35.4 bits (80), Expect = 0.48, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 46 ARIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRYV------NKHMLRHYREKNHSVAL 96
ARIP C+ C WL L +LC R N H + HYRE + +A+
Sbjct: 190 ARIPPCGWECSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAV 246
>sp|P56399|UBP5_MOUSE Ubiquitin carboxyl-terminal hydrolase 5 OS=Mus musculus GN=Usp5
PE=1 SV=1
Length = 858
Score = 37.7 bits (86), Expect = 0.085, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 179 ARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYV------NKHMLQHYQETNHSVAL 229
ARIP C++C WL L +LC R N H ++HY+ET + +A+
Sbjct: 190 ARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAV 246
Score = 35.4 bits (80), Expect = 0.43, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 46 ARIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRYV------NKHMLRHYREKNHSVAL 96
ARIP C+ C WL L +LC R N H + HYRE + +A+
Sbjct: 190 ARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAV 246
>sp|Q8K387|UBP45_MOUSE Ubiquitin carboxyl-terminal hydrolase 45 OS=Mus musculus GN=Usp45
PE=2 SV=1
Length = 813
Score = 37.7 bits (86), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 32/136 (23%)
Query: 5 SSKLPENG--------PEDED---EMMIGGELGWVRHLASCDHLVASLSSDLARIPTPDT 53
S LPE G P DED ++ +G V + S +H+ +++ L +
Sbjct: 7 SKDLPEKGKRNKRPLLPHDEDSSDDIAVGLTCQHVSYAVSVNHVKKAVAESLWSV----- 61
Query: 54 PCNMCKH-----------PRGNWLCLCCKEVLCSRYV-NKHMLRHYRE---KNHSVALDY 98
C+ C P WLCL C C + ++H LRH++ ++H V +
Sbjct: 62 -CSECLKERRFCDGQPVLPADVWLCLKCGLQGCGKNSESQHSLRHFKSSGTESHCVVISL 120
Query: 99 SDLSVWCFACHAYLNA 114
S +WC+ C+ L+
Sbjct: 121 STWVIWCYECNEKLST 136
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 194 PRGNWLCLCCKEVLCSRYV-NKHMLQHYQET---NHSVALGYSDLSVWCFACHAYLNA 247
P WLCL C C + ++H L+H++ + +H V + S +WC+ C+ L+
Sbjct: 79 PADVWLCLKCGLQGCGKNSESQHSLRHFKSSGTESHCVVISLSTWVIWCYECNEKLST 136
>sp|A6QNM7|UBP33_BOVIN Ubiquitin carboxyl-terminal hydrolase 33 OS=Bos taurus GN=USP33
PE=2 SV=1
Length = 912
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 198 WLCL--CCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQP 255
W CL C V C H H QET H + + + L VWC+AC + L QP
Sbjct: 41 WACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYACSKEVFLDRKLGTQP 100
Score = 34.7 bits (78), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 56/140 (40%), Gaps = 19/140 (13%)
Query: 55 CNMCKHPRGN-WLCL--CCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFAC--H 109
C CK N W CL C V C H H +E H + ++ + L VWC+AC
Sbjct: 30 CQDCKVRGPNLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYACSKE 89
Query: 110 AYLNAQAILQ-----LRPVHETSYVLKFGRALPFNTG-QHPKVKEDDEMMLGAESGSVRH 163
+L+ + Q ++P+H+ +P NT + P V D++ + E
Sbjct: 90 VFLDRKLGTQPSLPHVKPLHQIQENGVQDFKIPSNTTLKTPLVAVFDDLDIEVEEE---- 145
Query: 164 LTSCDHLVASLSTDLARIPN 183
D L A T L I N
Sbjct: 146 ----DELKARGLTGLKNIGN 161
>sp|Q5REG5|UBP33_PONAB Ubiquitin carboxyl-terminal hydrolase 33 OS=Pongo abelii GN=USP33
PE=2 SV=1
Length = 914
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 198 WLCL--CCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQP 255
W CL C V C H H QET H + + + L VWC+AC + L QP
Sbjct: 41 WACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYACSKEVFLDRKLGTQP 100
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 55 CNMCKHPRGN-WLCL--CCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAY 111
C CK N W CL C V C H H +E H + ++ + L VWC+AC
Sbjct: 30 CQDCKVRGPNLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYACSKE 89
Query: 112 LNAQAILQLRP 122
+ L +P
Sbjct: 90 VFLDRKLGTQP 100
>sp|A5PMR2|UBP33_DANRE Ubiquitin carboxyl-terminal hydrolase 33 OS=Danio rerio GN=usp33
PE=2 SV=1
Length = 897
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 198 WLCL--CCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFAC 241
W CL C V C H H QET H++ + + L VWC+AC
Sbjct: 42 WACLENGCSYVGCGESHADHSTVHSQETRHNLTVNLTTLRVWCYAC 87
Score = 35.0 bits (79), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 55 CNMCKHPRGN-WLCL--CCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFAC 108
C CK N W CL C V C H H +E H++ ++ + L VWC+AC
Sbjct: 31 CQDCKVGGPNLWACLENGCSYVGCGESHADHSTVHSQETRHNLTVNLTTLRVWCYAC 87
>sp|P38237|UBP14_YEAST Ubiquitin carboxyl-terminal hydrolase 14 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UBP14 PE=1
SV=2
Length = 781
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 23/100 (23%)
Query: 26 GWVRHLASCDHLVASLSSDLARIPT-PDTPCNM-----CKHPRGNWLCLCCKEVLCSRYV 79
WV +++C H ++ +IP+ P+ N+ C + WLCL C + C R
Sbjct: 163 SWVLEISTCPH------TENFQIPSKPENTVNLNQCSSCDLTQNLWLCLHCGNIGCGREQ 216
Query: 80 -----NKHMLRHYR-EKNHSVALDYSDLS-----VWCFAC 108
+ H L HYR NH +A+ LS ++C+AC
Sbjct: 217 IGIDGHSHALDHYRSNNNHPLAIKLGSLSSSTYDLYCYAC 256
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Query: 188 CNRCQHPRGNWLCLCCKEVLCSRYV-----NKHMLQHYQ-ETNHSVALGYSDLS-----V 236
C+ C + WLCL C + C R + H L HY+ NH +A+ LS +
Sbjct: 192 CSSCDLTQNLWLCLHCGNIGCGREQIGIDGHSHALDHYRSNNNHPLAIKLGSLSSSTYDL 251
Query: 237 WCFAC 241
+C+AC
Sbjct: 252 YCYAC 256
>sp|Q99LG0|UBP16_MOUSE Ubiquitin carboxyl-terminal hydrolase 16 OS=Mus musculus GN=Usp16
PE=1 SV=1
Length = 825
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 52 DTPCNMCKHPRGNWLCLCCKEVLCSR-YVNKHMLRHY---REKNHSVALDYSDLSVWCFA 107
D P + P WLCL C C R +H L+HY R + H + L + SVWC+
Sbjct: 59 DKPEEEAEDP-SVWLCLKCGHQGCGRDSQEQHALKHYTTPRSEPHYLVLSLDNWSVWCYK 117
Query: 108 C 108
C
Sbjct: 118 C 118
Score = 35.0 bits (79), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 185 DTPCNRCQHPRGNWLCLCCKEVLCSR-YVNKHMLQHY---QETNHSVALGYSDLSVWCFA 240
D P + P WLCL C C R +H L+HY + H + L + SVWC+
Sbjct: 59 DKPEEEAEDP-SVWLCLKCGHQGCGRDSQEQHALKHYTTPRSEPHYLVLSLDNWSVWCYK 117
Query: 241 C 241
C
Sbjct: 118 C 118
>sp|E1BY77|UBP13_CHICK Ubiquitin carboxyl-terminal hydrolase 13 OS=Gallus gallus GN=USP13
PE=3 SV=1
Length = 862
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 180 RIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYV------NKHMLQHYQETNHSVAL 229
RIP C++C WL L VLC ++ N H ++HY+ET + +A+
Sbjct: 198 RIPPSGWKCSKCDLRENLWLNLTDGSVLCGKWFFDGSGGNGHAMEHYKETGYPLAV 253
Score = 35.0 bits (79), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 27 WVRHLASCDHLVASLSSDLA-RIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRYV------ 79
W L + H + + D RIP C+ C WL L VLC ++
Sbjct: 177 WEEELQASKHAKSLVQLDNGVRIPPSGWKCSKCDLRENLWLNLTDGSVLCGKWFFDGSGG 236
Query: 80 NKHMLRHYREKNHSVALDYSDLSVWCFACHAYLNAQAIL 118
N H + HY+E + +A+ ++ +++ + +L
Sbjct: 237 NGHAMEHYKETGYPLAVKLGTITPDGADVYSFDEEEPVL 275
>sp|Q2KJ09|UBP16_RAT Ubiquitin carboxyl-terminal hydrolase 16 OS=Rattus norvegicus
GN=Usp16 PE=2 SV=2
Length = 826
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 65 WLCLCCKEVLCSR-YVNKHMLRHY---REKNHSVALDYSDLSVWCFAC 108
WLCL C C R +H L+HY R + H + L + SVWC+ C
Sbjct: 71 WLCLKCGHQGCGRDSQEQHALKHYTTPRSEPHYLVLSLDNWSVWCYKC 118
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 198 WLCLCCKEVLCSR-YVNKHMLQHY---QETNHSVALGYSDLSVWCFAC 241
WLCL C C R +H L+HY + H + L + SVWC+ C
Sbjct: 71 WLCLKCGHQGCGRDSQEQHALKHYTTPRSEPHYLVLSLDNWSVWCYKC 118
>sp|Q9Y5T5|UBP16_HUMAN Ubiquitin carboxyl-terminal hydrolase 16 OS=Homo sapiens GN=USP16
PE=1 SV=1
Length = 823
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 65 WLCLCCKEVLCSRYVN-KHMLRHY---REKNHSVALDYSDLSVWCFAC 108
WLCL C C R +H L+HY R + H + L + SVWC+ C
Sbjct: 72 WLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVC 119
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 198 WLCLCCKEVLCSRYVN-KHMLQHY---QETNHSVALGYSDLSVWCFAC 241
WLCL C C R +H L+HY + H + L + SVWC+ C
Sbjct: 72 WLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVC 119
>sp|Q4R6X7|UBP16_MACFA Ubiquitin carboxyl-terminal hydrolase 16 OS=Macaca fascicularis
GN=USP16 PE=2 SV=2
Length = 826
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 65 WLCLCCKEVLCSRYVN-KHMLRHY---REKNHSVALDYSDLSVWCFAC 108
WLCL C C R +H L+HY R + H + L + SVWC+ C
Sbjct: 72 WLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYIC 119
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 198 WLCLCCKEVLCSRYVN-KHMLQHY---QETNHSVALGYSDLSVWCFAC 241
WLCL C C R +H L+HY + H + L + SVWC+ C
Sbjct: 72 WLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYIC 119
>sp|Q8R5K2|UBP33_MOUSE Ubiquitin carboxyl-terminal hydrolase 33 OS=Mus musculus GN=Usp33
PE=1 SV=2
Length = 909
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 198 WLCL--CCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFAC 241
W CL C V C H H QET H + + + L VWC+AC
Sbjct: 41 WACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYAC 86
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 55 CNMCKHPRGN-WLCL--CCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFAC 108
C CK N W CL C V C H H +E H + ++ + L VWC+AC
Sbjct: 30 CQDCKVRGPNLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYAC 86
>sp|Q08DA3|UBP16_BOVIN Ubiquitin carboxyl-terminal hydrolase 16 OS=Bos taurus GN=USP16
PE=2 SV=1
Length = 826
Score = 35.4 bits (80), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 65 WLCLCCKEVLCSRYVN-KHMLRHY---REKNHSVALDYSDLSVWCFAC 108
WLCL C C R +H L+HY R + H + L + SVWC+ C
Sbjct: 72 WLCLKCGHQGCGRNSQEQHALKHYMKPRSEPHCLVLSLDNWSVWCYLC 119
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 198 WLCLCCKEVLCSRYVN-KHMLQHYQETN---HSVALGYSDLSVWCFAC 241
WLCL C C R +H L+HY + H + L + SVWC+ C
Sbjct: 72 WLCLKCGHQGCGRNSQEQHALKHYMKPRSEPHCLVLSLDNWSVWCYLC 119
>sp|A7Z056|UBP20_BOVIN Ubiquitin carboxyl-terminal hydrolase 20 OS=Bos taurus GN=USP20
PE=2 SV=1
Length = 912
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 14/99 (14%)
Query: 160 SVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGN-WLCL--CCKEVLCSRYVNKHM 216
S+ +T D L+ S ST C C N W CL C V C H
Sbjct: 13 SIGEVTKEDLLLKSKST-----------CQSCGVSGPNLWACLQVSCSYVGCGESFADHS 61
Query: 217 LQHYQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQP 255
H Q H++ + + VWC+AC + + L P
Sbjct: 62 TLHAQAKKHNLTVNLTTFRVWCYACEKEVFLEPRLAAHP 100
Score = 35.0 bits (79), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 65 WLCL--CCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYLNAQAILQLRP 122
W CL C V C H H + K H++ ++ + VWC+AC + + L P
Sbjct: 41 WACLQVSCSYVGCGESFADHSTLHAQAKKHNLTVNLTTFRVWCYACEKEVFLEPRLAAHP 100
>sp|Q8W4N3|UBP2_ARATH Ubiquitin carboxyl-terminal hydrolase 2 OS=Arabidopsis thaliana
GN=UBP2 PE=1 SV=2
Length = 961
Score = 34.7 bits (78), Expect = 0.75, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 10/62 (16%)
Query: 61 PRGN----WLCLCCKEVLCS-----RYVNKHMLRHYREKNHSVALDYSDLSV-WCFACHA 110
P+ N WLCL C +C H+LRH R H + + + + + WCF C
Sbjct: 103 PKSNNKAIWLCLECGCYVCGGVGLPNGPQSHVLRHSRVTRHRLVIQWENPQLRWCFPCQL 162
Query: 111 YL 112
L
Sbjct: 163 LL 164
Score = 32.7 bits (73), Expect = 3.3, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 194 PRGN----WLCLCCKEVLCS-----RYVNKHMLQHYQETNHSVALGYSDLSV-WCFACHA 243
P+ N WLCL C +C H+L+H + T H + + + + + WCF C
Sbjct: 103 PKSNNKAIWLCLECGCYVCGGVGLPNGPQSHVLRHSRVTRHRLVIQWENPQLRWCFPCQL 162
Query: 244 YL 245
L
Sbjct: 163 LL 164
>sp|A0JM59|UBP20_XENTR Ubiquitin carboxyl-terminal hydrolase 20 OS=Xenopus tropicalis
GN=usp20 PE=2 SV=1
Length = 884
Score = 34.7 bits (78), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 65 WLCL--CCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACH 109
W CL C+ V C H H + K H++ ++ + VWC+AC
Sbjct: 41 WACLQDGCQSVGCGESYVDHSTLHAQAKKHNLTVNLTTFRVWCYACE 87
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 198 WLCL--CCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACH 242
W CL C+ V C H H Q H++ + + VWC+AC
Sbjct: 41 WACLQDGCQSVGCGESYVDHSTLHAQAKKHNLTVNLTTFRVWCYACE 87
>sp|Q28CN3|UBP33_XENTR Ubiquitin carboxyl-terminal hydrolase 33 OS=Xenopus tropicalis
GN=usp33 PE=2 SV=1
Length = 892
Score = 34.7 bits (78), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 198 WLCL--CCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQP 255
W CL C V C H H Q+T H + + + L VWC+ C + L QP
Sbjct: 41 WACLENGCSYVGCGESHVDHSTLHSQDTKHCLTVNLTTLRVWCYTCSKEVFLDRKLSTQP 100
Query: 256 V 256
Sbjct: 101 T 101
>sp|Q70EL2|UBP45_HUMAN Ubiquitin carboxyl-terminal hydrolase 45 OS=Homo sapiens GN=USP45
PE=1 SV=3
Length = 814
Score = 34.3 bits (77), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 24/120 (20%)
Query: 13 PEDED---EMMIGGELGWVRHLASCDHLVASLSSDLARIPTPDTPCNMCKHPR------- 62
P DED ++ +G V H S +H+ +++ +L + C+ C R
Sbjct: 23 PHDEDSSDDIAVGLTCQHVSHAISVNHVKRAIAENLWSV------CSECLKERRFYDGQL 76
Query: 63 ----GNWLCLCCKEVLCSRYV-NKHMLRHY---REKNHSVALDYSDLSVWCFACHAYLNA 114
WLCL C C + ++H L+H+ R + H + ++ S +WC+ C L+
Sbjct: 77 VLTSDIWLCLKCGFQGCGKNSESQHSLKHFKSSRTEPHCIIINLSTWIIWCYECDEKLST 136
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 27/135 (20%)
Query: 134 RALPFNT--GQHPKVKED----DEMMLGAESGSVRHLTSCDHLVASLSTDLARIPNPDTP 187
+ALP + P V D D++ +G V H S +H+ +++ +L +
Sbjct: 8 KALPEKAKRSKRPTVPHDEDSSDDIAVGLTCQHVSHAISVNHVKRAIAENLWSV------ 61
Query: 188 CNRCQHPR-----------GNWLCLCCKEVLCSRYV-NKHMLQHYQETN---HSVALGYS 232
C+ C R WLCL C C + ++H L+H++ + H + + S
Sbjct: 62 CSECLKERRFYDGQLVLTSDIWLCLKCGFQGCGKNSESQHSLKHFKSSRTEPHCIIINLS 121
Query: 233 DLSVWCFACHAYLNA 247
+WC+ C L+
Sbjct: 122 TWIIWCYECDEKLST 136
>sp|Q8L6Y1|UBP14_ARATH Ubiquitin carboxyl-terminal hydrolase 14 OS=Arabidopsis thaliana
GN=UBP14 PE=1 SV=1
Length = 797
Score = 34.3 bits (77), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 181 IPNPDTPCNRCQHPRGNWLCLCCKEVLCSRY------VNKHMLQHYQETNHSVALGYSDL 234
IP C++C WL L +LC R N H ++HY+ET + +A+ +
Sbjct: 173 IPPSGWKCSKCDKTENLWLNLTDGMILCGRKNWDGTGGNNHAVEHYKETAYPLAVKLGTI 232
Query: 235 SVWCFACHAY 244
+ A Y
Sbjct: 233 TADLEAADVY 242
>sp|A5PN09|UBP20_DANRE Ubiquitin carboxyl-terminal hydrolase 20 OS=Danio rerio GN=usp20
PE=2 SV=1
Length = 911
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 65 WLCLCCK--EVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYLNAQAILQLRP 122
W CL C V C + H H + K H++ ++ + VWC+ C + L+ +P
Sbjct: 41 WACLQCDCPYVGCGESYSDHSTIHAQAKKHNLTVNLTTFRVWCYVCE----REVFLEPKP 96
Query: 123 VHETS 127
V S
Sbjct: 97 VTPVS 101
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 198 WLCLCCK--EVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQP 255
W CL C V C + H H Q H++ + + VWC+ C + L+ +P
Sbjct: 41 WACLQCDCPYVGCGESYSDHSTIHAQAKKHNLTVNLTTFRVWCYVCE----REVFLEPKP 96
Query: 256 V 256
V
Sbjct: 97 V 97
>sp|Q92995|UBP13_HUMAN Ubiquitin carboxyl-terminal hydrolase 13 OS=Homo sapiens GN=USP13
PE=1 SV=2
Length = 863
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 179 ARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYV------NKHMLQHYQETNHSVALGYS 232
RIP C RC WL L VLC ++ N H L+HY++ + +A+
Sbjct: 202 VRIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSGGNGHALEHYRDMGYPLAVKLG 261
Query: 233 DLSVWCFACHAYLNAQAIL 251
++ +++ + +L
Sbjct: 262 TITPDGADVYSFQEEEPVL 280
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 46 ARIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRYV------NKHMLRHYREKNHSVALDYS 99
RIP C C WL L VLC ++ N H L HYR+ + +A+
Sbjct: 202 VRIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSGGNGHALEHYRDMGYPLAVKLG 261
Query: 100 DLSVWCFACHAYLNAQAIL 118
++ +++ + +L
Sbjct: 262 TITPDGADVYSFQEEEPVL 280
>sp|Q70EK9|UBP51_HUMAN Ubiquitin carboxyl-terminal hydrolase 51 OS=Homo sapiens GN=USP51
PE=2 SV=1
Length = 711
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 67 CLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYLNAQAILQL 120
CL C C + KH+ +H K H +A+D ++CF C Y+ + I Q+
Sbjct: 249 CLSCVFFGC--FTEKHIHKHAETKQHHLAVDLYHGVIYCFMCKDYVYDKDIEQI 300
>sp|A6H8I0|UBP22_DANRE Ubiquitin carboxyl-terminal hydrolase 22 OS=Danio rerio GN=usp22
PE=2 SV=1
Length = 506
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 37 LVASLSSDLARIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVAL 96
V S S++ + C+MC N L C V + KH+ H + K H++A+
Sbjct: 28 FVWSGSAETRKRKAKSCICHMCG-AHLNRLHSCLHCVFFGCFSKKHIHEHAKNKRHNLAI 86
Query: 97 DYSDLSVWCFACHAYLNAQAILQL 120
D ++CF C Y+ + + Q+
Sbjct: 87 DLLYGGIYCFVCQDYIYDKDMEQI 110
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,875,062
Number of Sequences: 539616
Number of extensions: 4628905
Number of successful extensions: 12470
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 12306
Number of HSP's gapped (non-prelim): 152
length of query: 279
length of database: 191,569,459
effective HSP length: 116
effective length of query: 163
effective length of database: 128,974,003
effective search space: 21022762489
effective search space used: 21022762489
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (27.7 bits)