Query 023654
Match_columns 279
No_of_seqs 254 out of 1439
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 10:33:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023654.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023654hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ihp_A Ubiquitin carboxyl-term 100.0 3.3E-33 1.1E-37 290.1 15.8 189 51-272 45-305 (854)
2 3c5k_A HD6, histone deacetylas 100.0 6.5E-32 2.2E-36 216.3 11.3 108 162-273 2-109 (109)
3 2g45_A Ubiquitin carboxyl-term 100.0 2.1E-30 7.1E-35 213.1 10.1 108 156-273 3-125 (129)
4 3c5k_A HD6, histone deacetylas 99.9 6.4E-28 2.2E-32 193.1 10.2 107 29-139 2-108 (109)
5 2g45_A Ubiquitin carboxyl-term 99.9 4.3E-25 1.5E-29 181.5 8.6 106 25-139 5-124 (129)
6 2uzg_A Ubiquitin carboxyl-term 99.9 5.6E-25 1.9E-29 172.6 3.6 85 164-249 3-94 (97)
7 2ida_A Hypothetical protein; z 99.9 8.9E-24 3E-28 166.7 5.3 78 165-247 3-87 (102)
8 2i50_A Ubiquitin carboxyl-term 99.9 1.4E-23 4.9E-28 171.8 3.8 94 165-258 5-119 (126)
9 2uzg_A Ubiquitin carboxyl-term 99.9 8.4E-23 2.9E-27 160.2 3.6 87 31-118 3-95 (97)
10 2ida_A Hypothetical protein; z 99.8 1.3E-21 4.6E-26 154.2 5.1 79 33-116 4-89 (102)
11 2i50_A Ubiquitin carboxyl-term 99.8 6.3E-21 2.2E-25 156.1 2.2 90 31-120 4-114 (126)
12 3ihp_A Ubiquitin carboxyl-term 99.7 5.6E-18 1.9E-22 176.0 9.4 94 25-119 186-293 (854)
13 3mhs_A Ubiquitin carboxyl-term 99.7 3.4E-17 1.2E-21 158.4 5.3 63 185-249 48-113 (476)
14 3mhs_A Ubiquitin carboxyl-term 99.6 6.6E-17 2.2E-21 156.4 2.5 92 26-119 1-115 (476)
15 1wg2_A Zinc finger (AN1-like) 69.0 5.5 0.00019 28.2 3.9 26 184-210 14-41 (64)
16 1wfh_A Zinc finger (AN1-like) 66.0 6.7 0.00023 27.8 3.8 26 184-210 14-41 (64)
17 1wfp_A Zinc finger (AN1-like) 58.1 8.7 0.0003 28.0 3.3 26 184-210 24-51 (74)
18 2xzl_A ATP-dependent helicase 55.3 11 0.00039 38.5 4.9 58 52-109 11-78 (802)
19 1wg2_A Zinc finger (AN1-like) 54.8 14 0.00049 26.0 3.9 26 51-77 14-41 (64)
20 1x4w_A Hypothetical protein FL 53.1 10 0.00035 27.1 2.9 25 52-77 15-44 (67)
21 1wfh_A Zinc finger (AN1-like) 52.5 16 0.00055 25.8 3.9 26 51-77 14-41 (64)
22 1wfp_A Zinc finger (AN1-like) 50.8 16 0.00055 26.5 3.7 25 52-77 25-51 (74)
23 1x4w_A Hypothetical protein FL 46.2 6.7 0.00023 28.0 1.0 26 184-210 14-44 (67)
24 2xzl_A ATP-dependent helicase 43.4 25 0.00086 36.0 5.3 60 184-243 10-79 (802)
25 1wff_A Riken cDNA 2810002D23 p 39.8 37 0.0013 25.2 4.3 25 52-77 25-52 (85)
26 1wff_A Riken cDNA 2810002D23 p 38.9 17 0.00057 27.1 2.3 26 184-210 24-52 (85)
27 2dmd_A Zinc finger protein 64, 33.8 62 0.0021 22.3 4.7 54 195-266 34-88 (96)
28 2wjy_A Regulator of nonsense t 33.3 37 0.0013 34.8 4.6 59 184-242 5-73 (800)
29 2wjy_A Regulator of nonsense t 31.0 29 0.001 35.5 3.4 58 52-109 6-73 (800)
30 1wfl_A Zinc finger protein 216 29.2 52 0.0018 23.8 3.5 26 184-210 24-51 (74)
31 2czr_A TBP-interacting protein 27.5 28 0.00094 29.8 2.0 48 213-272 132-183 (226)
32 3lrq_A E3 ubiquitin-protein li 26.1 33 0.0011 25.2 2.1 48 185-247 22-70 (100)
33 4ap4_A E3 ubiquitin ligase RNF 26.0 16 0.00053 27.6 0.2 54 157-210 41-104 (133)
34 1vq8_Z 50S ribosomal protein L 25.2 37 0.0013 25.0 2.1 26 185-210 27-58 (83)
35 6rxn_A Rubredoxin; electron tr 24.6 29 0.001 22.7 1.3 12 197-208 4-15 (46)
36 2ysl_A Tripartite motif-contai 23.7 47 0.0016 22.3 2.4 27 184-210 19-45 (73)
37 2yqq_A Zinc finger HIT domain- 22.9 81 0.0028 21.5 3.4 29 181-210 8-36 (56)
38 2ysj_A Tripartite motif-contai 22.5 49 0.0017 21.6 2.3 27 184-210 19-45 (63)
39 2akl_A PHNA-like protein PA012 21.9 52 0.0018 26.5 2.5 23 185-207 27-54 (138)
40 2ffw_A Midline-1; B-BOX, ring 21.9 45 0.0015 23.8 2.0 38 53-94 31-75 (78)
41 1chc_A Equine herpes virus-1 r 21.5 88 0.003 20.6 3.5 27 184-210 4-31 (68)
42 1bor_A Transcription factor PM 21.4 50 0.0017 21.5 2.1 28 184-211 5-32 (56)
43 2d8q_A BLU protein, zinc finge 20.5 67 0.0023 22.5 2.7 37 182-222 12-49 (70)
44 1dl6_A Transcription factor II 20.3 48 0.0016 22.5 1.8 23 54-76 13-42 (58)
No 1
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.3e-33 Score=290.10 Aligned_cols=189 Identities=20% Similarity=0.309 Sum_probs=126.8
Q ss_pred CCCCCCCC----CCCCCeeeecccCceeecccccchhhhhhhccCCeEEEEcCCCcEEEcCCCcccchhhhhhccccchh
Q 023654 51 PDTPCNMC----KHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYLNAQAILQLRPVHET 126 (279)
Q Consensus 51 ~~~~C~~C----~~~~~lwvCL~Cg~~~Cgr~~~~Ha~~H~~~t~H~l~l~l~~~~vwCy~Cd~~V~~~~l~~l~~~~~~ 126 (279)
...+|.+| ....|++|||.|+..+|. .|+..|++.++|++||+++ +..++..+
T Consensus 45 ~k~eC~~~f~~~~~~~gl~vcl~~f~~~~~----~~~~~~~~~~~~~~~l~i~------------------~~~~~~~~- 101 (854)
T 3ihp_A 45 HKDECAFSFDTPESEGGLYICMNTFLGFGK----QYVERHFNKTGQRVYLHLR------------------RTRRPKEE- 101 (854)
T ss_dssp CCSSCSSSSCCTTSTTCEEEETTTCCEECT----TTHHHHHHHHCCCEEEEEE------------------EC-------
T ss_pred ecccCceecCCCCCCCCeEEcccccccccH----HHHHHHHhccCCceEEEEE------------------EEeccccc-
Confidence 46799999 577899999999999996 4999999999999999998 22222211
Q ss_pred hhhhhhccCCCCCCCCCcccccc----chhhh------------------------------------------------
Q 023654 127 SYVLKFGRALPFNTGQHPKVKED----DEMML------------------------------------------------ 154 (279)
Q Consensus 127 ~~~~~fg~~~~~~~~kl~i~~~~----~e~~~------------------------------------------------ 154 (279)
.....-++.++.+++||+|++|. ++++|
T Consensus 102 ~~~~~~~~~~~~~~~kl~i~~~~g~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 181 (854)
T 3ihp_A 102 DPATGTGDPPRKKPTRLAIGVEGGFDLSEEKFELDEDVKIVILPDYLEIARDGLGGLPDIVRDRVTSAVEALLSADSASR 181 (854)
T ss_dssp ----------------------------------CEEEEEEETTTTEEECTTCCTTSCHHHHHHHHHHHHHHTC------
T ss_pred ccccccccCCccCcceeEEeeccCCcccccceeeeeeEEEEEecCCccccCCCcccCChhhHHHHHHHHHHHHhcCCHHH
Confidence 00001123356778999999874 33333
Q ss_pred -cccccccccc-ccchhhhhhhccc--ccCCCCCCCCCCCCCCCCCeeeecccCceecccCC------ChHHHHHhhhcC
Q 023654 155 -GAESGSVRHL-TSCDHLVASLSTD--LARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYV------NKHMLQHYQETN 224 (279)
Q Consensus 155 -~~~~~~~~~~-~~C~Hl~~~l~~~--~~~~~~~~~~C~~C~~~~~lW~CL~Cg~vgCgr~~------~~Ha~~H~~~~~ 224 (279)
+++++|+.++ ..|+|+ ..|.+. ...+++..++|++|+...++|+||+||+|||||+. ++||+.||++++
T Consensus 182 ~~~~~~w~~~~~~~c~h~-~~~~~~~~~~~~~~~~~~C~~c~~~~~lw~CL~Cg~vgC~r~~~~~~~~~~ha~~H~~~~~ 260 (854)
T 3ihp_A 182 KQEVQAWDGEVRQVSKHA-FSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETG 260 (854)
T ss_dssp ----------CCCBCTTT-TTCCCCSSCCCCCSSCCCCSSSCCCSSEEEETTTCCEEECCBC-CCCBCCSHHHHHHHHHC
T ss_pred HHHHHhhcCccCCCCcCc-cccccccccccCCCCCCcCcCcCCcCceEEEecCCCccccccccCCCCCchHHHHHHhhcC
Confidence 2567899887 999999 666554 24566677999999999999999999999999874 899999999999
Q ss_pred CeeEEeCCC-----ccEEECCCCcee-chhHHhhhcchhhHHHHHhhCCCCCCC
Q 023654 225 HSVALGYSD-----LSVWCFACHAYL-NAQAILQLQPVHETAYVLKFGRALPFL 272 (279)
Q Consensus 225 H~l~v~l~t-----~~v~CY~Cd~~V-~~~~~~~l~~~~~~~h~~~fg~~~~~~ 272 (279)
||++|+|+| .+||||.||++| ++.+ +.|+++|||++...
T Consensus 261 H~~~~~l~t~~~~~~~~~cy~~~~~v~~~~l---------~~~l~~~gi~~~~~ 305 (854)
T 3ihp_A 261 YPLAVKLGTITPDGADVYSYDEDDMVLDPSL---------AEHLSHFGIDMLKM 305 (854)
T ss_dssp CCEEEETTCCBTTBCCEEETTTTEECBCTTH---------HHHHHHTTCCC---
T ss_pred CcEEEEcCCcCCCCCeEEEccCCCeeeCccH---------HHHHHHhCcccccc
Confidence 999999999 899999999999 5565 78999999987654
No 2
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=99.97 E-value=6.5e-32 Score=216.25 Aligned_cols=108 Identities=40% Similarity=0.792 Sum_probs=96.0
Q ss_pred cccccchhhhhhhcccccCCCCCCCCCCCCCCCCCeeeecccCceecccCCChHHHHHhhhcCCeeEEeCCCccEEECCC
Q 023654 162 RHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFAC 241 (279)
Q Consensus 162 ~~~~~C~Hl~~~l~~~~~~~~~~~~~C~~C~~~~~lW~CL~Cg~vgCgr~~~~Ha~~H~~~~~H~l~v~l~t~~v~CY~C 241 (279)
.+...|||+ ..|++.....+...+.|++|+...++|+||+||+|||||+.++||++||++++||++|+++|++||||.|
T Consensus 2 ~~~~~C~Hl-~~l~~~~~~~~~~~~~C~~C~~~~~~W~CL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~~~~vwCy~c 80 (109)
T 3c5k_A 2 SPLPWCPHL-VAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYC 80 (109)
T ss_dssp CCBSCCTTG-GGCCCCCTTCCCTTCCCTTTCCCSSEEEETTTCCEEECTTTTCHHHHHHHHHCCCEEEETTTCCEEETTT
T ss_pred CCCCCCcCc-ccccccCCCCCCcCCcCccccCCCCeeeeeecCccccCCCcChHHHHHhcccCCCEEEECCCCCEEECCC
Confidence 467899999 6777653223346789999999999999999999999999999999999999999999999999999999
Q ss_pred CceechhHHhhhcchhhHHHHHhhCCCCCCCc
Q 023654 242 HAYLNAQAILQLQPVHETAYVLKFGRALPFLM 273 (279)
Q Consensus 242 d~~V~~~~~~~l~~~~~~~h~~~fg~~~~~~~ 273 (279)
|+||+++. |.+.+.++||.||||++++.+
T Consensus 81 d~~V~~~~---L~d~~~~~hl~~fg~~~~~~~ 109 (109)
T 3c5k_A 81 QAYVHHQA---LLDVKNIAHQNKFGEDMPHPH 109 (109)
T ss_dssp TEEBCCGG---GHHHHHHHHHHHHCSCCSSCC
T ss_pred CCEEeccc---ccChHHHHHHHHhCCCCCCCC
Confidence 99998765 667788999999999999874
No 3
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=99.96 E-value=2.1e-30 Score=213.14 Aligned_cols=108 Identities=23% Similarity=0.401 Sum_probs=88.8
Q ss_pred ccccccccc-ccchhhhhhhccc--ccCCCCCCCCCCCCCCCCCeeeecccCceecccCC------ChHHHHHhhhcCCe
Q 023654 156 AESGSVRHL-TSCDHLVASLSTD--LARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYV------NKHMLQHYQETNHS 226 (279)
Q Consensus 156 ~~~~~~~~~-~~C~Hl~~~l~~~--~~~~~~~~~~C~~C~~~~~lW~CL~Cg~vgCgr~~------~~Ha~~H~~~~~H~ 226 (279)
++++|+.+. ..|||+ ..|.+. ...+++..++|++|+...++|+||+||+|||||+. ++||++||++++||
T Consensus 3 ~~~~W~~e~~~~C~h~-~~l~q~~~~~~~~~~~~~C~~C~~~~~LwlCL~CG~vgCgr~~~~g~g~~~HA~~H~~~t~H~ 81 (129)
T 2g45_A 3 EVQAWDGEVRQVSKHA-FSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYP 81 (129)
T ss_dssp --------CCEECTTT-TTCCCCSSCCCCCCCBCCCSSSSCCSSEEEETTTCCEEECCBCTTSCBCCSHHHHHHHHHCCC
T ss_pred HHHhhcCCCCCCCCCc-CcccccccccccCCCCCcCccccCcCceEEeccCCccccCccccCCCCcCcHHHHHhhhcCCC
Confidence 578998776 789999 677764 23455677899999999999999999999999985 99999999999999
Q ss_pred eEEeCCCc-----cEEECCCCcee-chhHHhhhcchhhHHHHHhhCCCCCCCc
Q 023654 227 VALGYSDL-----SVWCFACHAYL-NAQAILQLQPVHETAYVLKFGRALPFLM 273 (279)
Q Consensus 227 l~v~l~t~-----~v~CY~Cd~~V-~~~~~~~l~~~~~~~h~~~fg~~~~~~~ 273 (279)
++|+|+|+ +||||.||+|| |+.+ +.||+||||+++...
T Consensus 82 l~v~l~t~~~~~~~vwcY~cd~~V~dp~L---------~~hl~~fgi~~~~~~ 125 (129)
T 2g45_A 82 LAVKLGTITPDGADVYSYDEDDMVLDPSL---------AEHLSHFGIDMLKMQ 125 (129)
T ss_dssp EEEETTCCBTTBCCEEETTTTEEEECTTH---------HHHHHTTTCCTTTCC
T ss_pred EEEECCCCCCCCCeEEECCCCCEeECccH---------HHHHHHHCCChhhhh
Confidence 99999995 99999999999 5666 899999999998764
No 4
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=99.95 E-value=6.4e-28 Score=193.06 Aligned_cols=107 Identities=38% Similarity=0.796 Sum_probs=93.0
Q ss_pred ecCCCCcccccccccCcCCCCCCCCCCCCCCCCCCeeeecccCceeecccccchhhhhhhccCCeEEEEcCCCcEEEcCC
Q 023654 29 RHLASCDHLVASLSSDLARIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFAC 108 (279)
Q Consensus 29 ~~~~~CpHl~~~l~~~~~~~~~~~~~C~~C~~~~~lwvCL~Cg~~~Cgr~~~~Ha~~H~~~t~H~l~l~l~~~~vwCy~C 108 (279)
.|...|||+ .+|++.....+...+.|..|....++|+||+||++||||+.++||+.||++++|+|++++.+.+||||.|
T Consensus 2 ~~~~~C~Hl-~~l~~~~~~~~~~~~~C~~C~~~~~~W~CL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~~~~vwCy~c 80 (109)
T 3c5k_A 2 SPLPWCPHL-VAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYC 80 (109)
T ss_dssp CCBSCCTTG-GGCCCCCTTCCCTTCCCTTTCCCSSEEEETTTCCEEECTTTTCHHHHHHHHHCCCEEEETTTCCEEETTT
T ss_pred CCCCCCcCc-ccccccCCCCCCcCCcCccccCCCCeeeeeecCccccCCCcChHHHHHhcccCCCEEEECCCCCEEECCC
Confidence 578899999 6776532222224678999999999999999999999999999999999999999999999999999999
Q ss_pred CcccchhhhhhccccchhhhhhhhccCCCCC
Q 023654 109 HAYLNAQAILQLRPVHETSYVLKFGRALPFN 139 (279)
Q Consensus 109 d~~V~~~~l~~l~~~~~~~~~~~fg~~~~~~ 139 (279)
|+||++++|. +.+..+|+.+||+++++.
T Consensus 81 d~~V~~~~L~---d~~~~~hl~~fg~~~~~~ 108 (109)
T 3c5k_A 81 QAYVHHQALL---DVKNIAHQNKFGEDMPHP 108 (109)
T ss_dssp TEEBCCGGGH---HHHHHHHHHHHCSCCSSC
T ss_pred CCEEeccccc---ChHHHHHHHHhCCCCCCC
Confidence 9999999877 444569999999999885
No 5
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=99.91 E-value=4.3e-25 Score=181.48 Aligned_cols=106 Identities=25% Similarity=0.417 Sum_probs=86.9
Q ss_pred ceeeecC-CCCcccccccccCc--CCCCCCCCCCCCCCCCCCeeeecccCceeecccc------cchhhhhhhccCCeEE
Q 023654 25 LGWVRHL-ASCDHLVASLSSDL--ARIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRYV------NKHMLRHYREKNHSVA 95 (279)
Q Consensus 25 ~~~~~~~-~~CpHl~~~l~~~~--~~~~~~~~~C~~C~~~~~lwvCL~Cg~~~Cgr~~------~~Ha~~H~~~t~H~l~ 95 (279)
..|+.+. ..|||+ ..|.+.. ..+++..+.|..|....++|+||+||++||||+. ++||+.||++++|||+
T Consensus 5 ~~W~~e~~~~C~h~-~~l~q~~~~~~~~~~~~~C~~C~~~~~LwlCL~CG~vgCgr~~~~g~g~~~HA~~H~~~t~H~l~ 83 (129)
T 2g45_A 5 QAWDGEVRQVSKHA-FSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLA 83 (129)
T ss_dssp ------CCEECTTT-TTCCCCSSCCCCCCCBCCCSSSSCCSSEEEETTTCCEEECCBCTTSCBCCSHHHHHHHHHCCCEE
T ss_pred HhhcCCCCCCCCCc-CcccccccccccCCCCCcCccccCcCceEEeccCCccccCccccCCCCcCcHHHHHhhhcCCCEE
Confidence 4687554 689999 6666432 2345456789999999999999999999999986 9999999999999999
Q ss_pred EEcCC-----CcEEEcCCCcccchhhhhhccccchhhhhhhhccCCCCC
Q 023654 96 LDYSD-----LSVWCFACHAYLNAQAILQLRPVHETSYVLKFGRALPFN 139 (279)
Q Consensus 96 l~l~~-----~~vwCy~Cd~~V~~~~l~~l~~~~~~~~~~~fg~~~~~~ 139 (279)
|++.+ .+||||.||+||.||.|. .|+.+||+++...
T Consensus 84 v~l~t~~~~~~~vwcY~cd~~V~dp~L~--------~hl~~fgi~~~~~ 124 (129)
T 2g45_A 84 VKLGTITPDGADVYSYDEDDMVLDPSLA--------EHLSHFGIDMLKM 124 (129)
T ss_dssp EETTCCBTTBCCEEETTTTEEEECTTHH--------HHHHTTTCCTTTC
T ss_pred EECCCCCCCCCeEEECCCCCEeECccHH--------HHHHHHCCChhhh
Confidence 99999 699999999999999876 7899999988754
No 6
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=99.90 E-value=5.6e-25 Score=172.60 Aligned_cols=85 Identities=29% Similarity=0.608 Sum_probs=72.2
Q ss_pred cccchhhhhhhcccc-c-CCCCCCCCCCCCC-CCCCeeeecc--cCceecccCCChHHHHHhhhcCCeeEEeCCCccEEE
Q 023654 164 LTSCDHLVASLSTDL-A-RIPNPDTPCNRCQ-HPRGNWLCLC--CKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWC 238 (279)
Q Consensus 164 ~~~C~Hl~~~l~~~~-~-~~~~~~~~C~~C~-~~~~lW~CL~--Cg~vgCgr~~~~Ha~~H~~~~~H~l~v~l~t~~v~C 238 (279)
...|||+ ..+.+.. . .+++..++|++|+ ...++|+||+ ||+|||||+.++||++||++++||++|+++|++|||
T Consensus 3 ~~~C~Hl-~~~~~~~~~~~~~~~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr~~~~Ha~~H~~~t~H~~~~~l~~~~vwC 81 (97)
T 2uzg_A 3 RNHCPHL-DSVGEITKEDLIQKSLGTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWC 81 (97)
T ss_dssp CCSCHHH-HHSCCCCHHHHHHHTTTCCSSSCCCCSSCEEECCTTCCCEECCTTTTCHHHHHHHHTTCCEEEETTTTEEEE
T ss_pred CCCCcCc-chhcccCcccccCCCCCcCcCcCCCCCCceeeecccCCCcccCCCcChHHHHHhhhcCCcEEEECCCCCEEE
Confidence 4689999 5565442 1 1234678999999 6678899999 999999999999999999999999999999999999
Q ss_pred CCCCcee--chhH
Q 023654 239 FACHAYL--NAQA 249 (279)
Q Consensus 239 Y~Cd~~V--~~~~ 249 (279)
|.||+|| |+.+
T Consensus 82 y~cdd~V~~d~~L 94 (97)
T 2uzg_A 82 YACSKEVFLDRKL 94 (97)
T ss_dssp TTTTEEECCCSCC
T ss_pred CCCCcEeecCccc
Confidence 9999997 5554
No 7
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=99.88 E-value=8.9e-24 Score=166.72 Aligned_cols=78 Identities=24% Similarity=0.584 Sum_probs=67.5
Q ss_pred ccchhhhhhhcccccCCCCCCCCCCCCCCCC----CeeeecccCceecccC-CChHHHHHhhhcCCeeEEeCC--CccEE
Q 023654 165 TSCDHLVASLSTDLARIPNPDTPCNRCQHPR----GNWLCLCCKEVLCSRY-VNKHMLQHYQETNHSVALGYS--DLSVW 237 (279)
Q Consensus 165 ~~C~Hl~~~l~~~~~~~~~~~~~C~~C~~~~----~lW~CL~Cg~vgCgr~-~~~Ha~~H~~~~~H~l~v~l~--t~~v~ 237 (279)
..|||+ ..+.. +++..++|++|+..+ +||+||+||+|||||+ +++||++||++++|||+++++ +.+||
T Consensus 3 ~~C~Hl-~~~~~----~~p~~~~C~~C~~~~~~Wv~LwlCL~CG~VGC~r~s~~~HA~~H~~~t~Hpl~~S~~~~~~~vw 77 (102)
T 2ida_A 3 MGCRHV-AGIRT----VTPSALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRHFHATGHPIIEGYDPPEGWGW 77 (102)
T ss_dssp CCCGGG-GGCCC----CCCSSSSCHHHHTTTCCCSCBEEESSSCCCCBCTTSTTCHHHHHHHHHCCCEEEESSSCSCEEE
T ss_pred CcCcCc-ccccc----CCCCCCcCccccccCCcchheeeeeEcCCCcccCCCccHHHHHHHhccCCCEEEEEecCCCCEE
Confidence 359999 54443 234579999999997 8999999999999999 999999999999999998887 57999
Q ss_pred ECCCCceech
Q 023654 238 CFACHAYLNA 247 (279)
Q Consensus 238 CY~Cd~~V~~ 247 (279)
||.||+||+.
T Consensus 78 cY~cd~~V~~ 87 (102)
T 2ida_A 78 CYVDEVMFDL 87 (102)
T ss_dssp ETTTTEEEEC
T ss_pred EcCCCcEEEC
Confidence 9999999954
No 8
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=99.88 E-value=1.4e-23 Score=171.84 Aligned_cols=94 Identities=29% Similarity=0.621 Sum_probs=76.4
Q ss_pred ccchhhhhhhccc-c-cCC-CCCCCCCCCCCC--------------CCCeeeecccCceecccC-CChHHHHHhhh---c
Q 023654 165 TSCDHLVASLSTD-L-ARI-PNPDTPCNRCQH--------------PRGNWLCLCCKEVLCSRY-VNKHMLQHYQE---T 223 (279)
Q Consensus 165 ~~C~Hl~~~l~~~-~-~~~-~~~~~~C~~C~~--------------~~~lW~CL~Cg~vgCgr~-~~~Ha~~H~~~---~ 223 (279)
..|||+...+.+. . ..+ +...+.|.+|.. ..++|+||+||+|||||+ +++||++||++ +
T Consensus 5 ~~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~Lw~CL~CG~vgCgr~~~~~Ha~~H~~~~~~t 84 (126)
T 2i50_A 5 PVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPRSE 84 (126)
T ss_dssp CCCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTCTTSSCSSCTTTCCCCCEEEETTTCCEEECTTSSSCHHHHHHHSCCSS
T ss_pred CCCcChhhccccccccccccCCCCCcCccccccccccccccccccccccceeeeeCCccccCCCCcchHHHHHHhCcCCC
Confidence 6899995544332 1 112 234578999986 699999999999999998 78999999999 8
Q ss_pred CCeeEEeCCCccEEECCCCceechhHHhhhcchhh
Q 023654 224 NHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHE 258 (279)
Q Consensus 224 ~H~l~v~l~t~~v~CY~Cd~~V~~~~~~~l~~~~~ 258 (279)
+||++|+++|+.||||.||+||.++..++|.++.+
T Consensus 85 ~H~l~~~l~t~~vwCY~cd~~V~~~~~~~l~~~v~ 119 (126)
T 2i50_A 85 PHCLVLSLDNWSVWCYVCDNEVQYCSSNQLGQVVD 119 (126)
T ss_dssp CCCEEEETTTCCEEETTTTEEECCCTTSHHHHHHH
T ss_pred CCcEEEECCCCeEEeCCCCcEEEcCcchhHHHHHH
Confidence 99999999999999999999998766666766653
No 9
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=99.86 E-value=8.4e-23 Score=160.20 Aligned_cols=87 Identities=28% Similarity=0.553 Sum_probs=72.8
Q ss_pred CCCCcccccccccCcC--CCCCCCCCCCCCC-CCCCeeeecc--cCceeecccccchhhhhhhccCCeEEEEcCCCcEEE
Q 023654 31 LASCDHLVASLSSDLA--RIPTPDTPCNMCK-HPRGNWLCLC--CKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWC 105 (279)
Q Consensus 31 ~~~CpHl~~~l~~~~~--~~~~~~~~C~~C~-~~~~lwvCL~--Cg~~~Cgr~~~~Ha~~H~~~t~H~l~l~l~~~~vwC 105 (279)
...|||+ .++.+... .++...+.|..|. ...++|+||+ ||++||||+.++||+.||++++|+|+|++.+.+|||
T Consensus 3 ~~~C~Hl-~~~~~~~~~~~~~~~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr~~~~Ha~~H~~~t~H~~~~~l~~~~vwC 81 (97)
T 2uzg_A 3 RNHCPHL-DSVGEITKEDLIQKSLGTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWC 81 (97)
T ss_dssp CCSCHHH-HHSCCCCHHHHHHHTTTCCSSSCCCCSSCEEECCTTCCCEECCTTTTCHHHHHHHHTTCCEEEETTTTEEEE
T ss_pred CCCCcCc-chhcccCcccccCCCCCcCcCcCCCCCCceeeecccCCCcccCCCcChHHHHHhhhcCCcEEEECCCCCEEE
Confidence 4589999 55543221 1222467899998 6778899999 999999999999999999999999999999999999
Q ss_pred cCCCccc-chhhhh
Q 023654 106 FACHAYL-NAQAIL 118 (279)
Q Consensus 106 y~Cd~~V-~~~~l~ 118 (279)
|.||+|| .|+.|.
T Consensus 82 y~cdd~V~~d~~L~ 95 (97)
T 2uzg_A 82 YACSKEVFLDRKLG 95 (97)
T ss_dssp TTTTEEECCCSCCC
T ss_pred CCCCcEeecCcccc
Confidence 9999999 577654
No 10
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=99.84 E-value=1.3e-21 Score=154.24 Aligned_cols=79 Identities=22% Similarity=0.540 Sum_probs=67.7
Q ss_pred CCcccccccccCcCCCCCCCCCCCCCCCCC----CeeeecccCceeeccc-ccchhhhhhhccCCeEEEEcC--CCcEEE
Q 023654 33 SCDHLVASLSSDLARIPTPDTPCNMCKHPR----GNWLCLCCKEVLCSRY-VNKHMLRHYREKNHSVALDYS--DLSVWC 105 (279)
Q Consensus 33 ~CpHl~~~l~~~~~~~~~~~~~C~~C~~~~----~lwvCL~Cg~~~Cgr~-~~~Ha~~H~~~t~H~l~l~l~--~~~vwC 105 (279)
.|||+ ..++. +++..+.|..|...+ +||+||+||++||+|+ .++||+.||++|+|||++++. +.++||
T Consensus 4 ~C~Hl-~~~~~----~~p~~~~C~~C~~~~~~Wv~LwlCL~CG~VGC~r~s~~~HA~~H~~~t~Hpl~~S~~~~~~~vwc 78 (102)
T 2ida_A 4 GCRHV-AGIRT----VTPSALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRHFHATGHPIIEGYDPPEGWGWC 78 (102)
T ss_dssp CCGGG-GGCCC----CCCSSSSCHHHHTTTCCCSCBEEESSSCCCCBCTTSTTCHHHHHHHHHCCCEEEESSSCSCEEEE
T ss_pred cCcCc-ccccc----CCCCCCcCccccccCCcchheeeeeEcCCCcccCCCccHHHHHHHhccCCCEEEEEecCCCCEEE
Confidence 59999 55442 233468999997665 8889999999999998 899999999999999999987 578999
Q ss_pred cCCCcccchhh
Q 023654 106 FACHAYLNAQA 116 (279)
Q Consensus 106 y~Cd~~V~~~~ 116 (279)
|.||+||.+|+
T Consensus 79 Y~cd~~V~~p~ 89 (102)
T 2ida_A 79 YVDEVMFDLSD 89 (102)
T ss_dssp TTTTEEEECTT
T ss_pred cCCCcEEECcc
Confidence 99999999874
No 11
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=99.80 E-value=6.3e-21 Score=156.13 Aligned_cols=90 Identities=29% Similarity=0.637 Sum_probs=71.1
Q ss_pred CCCCcccccccccCc--CC-CCCCCCCCCCCCC--------------CCCeeeecccCceeeccc-ccchhhhhhhc---
Q 023654 31 LASCDHLVASLSSDL--AR-IPTPDTPCNMCKH--------------PRGNWLCLCCKEVLCSRY-VNKHMLRHYRE--- 89 (279)
Q Consensus 31 ~~~CpHl~~~l~~~~--~~-~~~~~~~C~~C~~--------------~~~lwvCL~Cg~~~Cgr~-~~~Ha~~H~~~--- 89 (279)
...|||+...+.++. .. .+...+.|..|.. ..++|+||+||++||||+ .++||+.||++
T Consensus 4 ~~~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~Lw~CL~CG~vgCgr~~~~~Ha~~H~~~~~~ 83 (126)
T 2i50_A 4 MPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPRS 83 (126)
T ss_dssp -CCCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTCTTSSCSSCTTTCCCCCEEEETTTCCEEECTTSSSCHHHHHHHSCCS
T ss_pred CCCCcChhhccccccccccccCCCCCcCccccccccccccccccccccccceeeeeCCccccCCCCcchHHHHHHhCcCC
Confidence 357999954443211 11 2223467998854 689999999999999998 68999999999
Q ss_pred cCCeEEEEcCCCcEEEcCCCcccchhhhhhc
Q 023654 90 KNHSVALDYSDLSVWCFACHAYLNAQAILQL 120 (279)
Q Consensus 90 t~H~l~l~l~~~~vwCy~Cd~~V~~~~l~~l 120 (279)
++|||++++.+..||||.||+||.++....+
T Consensus 84 t~H~l~~~l~t~~vwCY~cd~~V~~~~~~~l 114 (126)
T 2i50_A 84 EPHCLVLSLDNWSVWCYVCDNEVQYCSSNQL 114 (126)
T ss_dssp SCCCEEEETTTCCEEETTTTEEECCCTTSHH
T ss_pred CCCcEEEECCCCeEEeCCCCcEEEcCcchhH
Confidence 8999999999999999999999998754443
No 12
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.72 E-value=5.6e-18 Score=176.01 Aligned_cols=94 Identities=27% Similarity=0.498 Sum_probs=77.1
Q ss_pred ceeeecC-CCCccccccccc-C-cCCCCCCCCCCCCCCCCCCeeeecccCceeecccc------cchhhhhhhccCCeEE
Q 023654 25 LGWVRHL-ASCDHLVASLSS-D-LARIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRYV------NKHMLRHYREKNHSVA 95 (279)
Q Consensus 25 ~~~~~~~-~~CpHl~~~l~~-~-~~~~~~~~~~C~~C~~~~~lwvCL~Cg~~~Cgr~~------~~Ha~~H~~~t~H~l~ 95 (279)
..|+.++ ..|+|+ ..|.+ + ...+++..+.|..|....++|+||+||++||||+. ++||+.||++++|+++
T Consensus 186 ~~w~~~~~~~c~h~-~~~~~~~~~~~~~~~~~~C~~c~~~~~lw~CL~Cg~vgC~r~~~~~~~~~~ha~~H~~~~~H~~~ 264 (854)
T 3ihp_A 186 QAWDGEVRQVSKHA-FSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLA 264 (854)
T ss_dssp ------CCCBCTTT-TTCCCCSSCCCCCSSCCCCSSSCCCSSEEEETTTCCEEECCBC-CCCBCCSHHHHHHHHHCCCEE
T ss_pred HhhcCccCCCCcCc-cccccccccccCCCCCCcCcCcCCcCceEEEecCCCccccccccCCCCCchHHHHHHhhcCCcEE
Confidence 4798887 899999 65543 2 23455567899999999999999999999999864 8999999999999999
Q ss_pred EEcCC-----CcEEEcCCCcccchhhhhh
Q 023654 96 LDYSD-----LSVWCFACHAYLNAQAILQ 119 (279)
Q Consensus 96 l~l~~-----~~vwCy~Cd~~V~~~~l~~ 119 (279)
+++.+ .+||||.||++|.++.|..
T Consensus 265 ~~l~t~~~~~~~~~cy~~~~~v~~~~l~~ 293 (854)
T 3ihp_A 265 VKLGTITPDGADVYSYDEDDMVLDPSLAE 293 (854)
T ss_dssp EETTCCBTTBCCEEETTTTEECBCTTHHH
T ss_pred EEcCCcCCCCCeEEEccCCCeeeCccHHH
Confidence 99999 9999999999999998874
No 13
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=99.66 E-value=3.4e-17 Score=158.42 Aligned_cols=63 Identities=22% Similarity=0.630 Sum_probs=58.5
Q ss_pred CCCCCCCCCC--CCeeeecccCceecccCCChHHHHHhhhcCCeeEEeCCCccEEECCCCceec-hhH
Q 023654 185 DTPCNRCQHP--RGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYLN-AQA 249 (279)
Q Consensus 185 ~~~C~~C~~~--~~lW~CL~Cg~vgCgr~~~~Ha~~H~~~~~H~l~v~l~t~~v~CY~Cd~~V~-~~~ 249 (279)
.++|++|... .++|+||+||++|||+ ++||+.|+.+++|+++|++.+.+||||.||++|. +.+
T Consensus 48 ~~~C~~c~~~~~~~~~~cl~cg~~~c~~--~~h~~~H~~~~~h~~~~~~~~~~~~c~~~~~~v~d~~l 113 (476)
T 3mhs_A 48 TMKCGTCHEINSGATFMCLQCGFCGCWN--HSHFLSHSKQIGHIFGINSNNGLLFCFKCEDYIGNIDL 113 (476)
T ss_dssp HSBCTTTCCBCSSSEEEESSSSCEEETT--TTHHHHHHHHHCCCEEEETTTCCEEETTTTEEECSCHH
T ss_pred CCCcccccCCCCCCceEeCCCCCCccCC--chHHHHHhcccCCcEEEECCCCcEEeCCCCCCcccHHH
Confidence 4679999988 7999999999999998 8999999999999999999999999999999994 554
No 14
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=99.62 E-value=6.6e-17 Score=156.44 Aligned_cols=92 Identities=18% Similarity=0.525 Sum_probs=71.1
Q ss_pred eeeecCCCCcccccccccCc----C------------CCCC-----CCCCCCCCCCC--CCeeeecccCceeecccccch
Q 023654 26 GWVRHLASCDHLVASLSSDL----A------------RIPT-----PDTPCNMCKHP--RGNWLCLCCKEVLCSRYVNKH 82 (279)
Q Consensus 26 ~~~~~~~~CpHl~~~l~~~~----~------------~~~~-----~~~~C~~C~~~--~~lwvCL~Cg~~~Cgr~~~~H 82 (279)
+|+.|+..|||+...++... . ..+. ....|..|... .++|+||+||++|||+ ++|
T Consensus 1 ~~~~~~~~C~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~~cl~cg~~~c~~--~~h 78 (476)
T 3mhs_A 1 GAAAAMSICPHIQQVFQNEKSKDGVLKTCNAARYILNHSVPKEKFLNTMKCGTCHEINSGATFMCLQCGFCGCWN--HSH 78 (476)
T ss_dssp ----CCCCCHHHHHHTTSHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHSBCTTTCCBCSSSEEEESSSSCEEETT--TTH
T ss_pred CCcccccCCcCHHHHhcchhhHHHHHHHhHHHHHhhccCchhhcccCCCCcccccCCCCCCceEeCCCCCCccCC--chH
Confidence 46789999999944321000 0 0110 12469999776 7999999999999997 789
Q ss_pred hhhhhhccCCeEEEEcCCCcEEEcCCCcccchhhhhh
Q 023654 83 MLRHYREKNHSVALDYSDLSVWCFACHAYLNAQAILQ 119 (279)
Q Consensus 83 a~~H~~~t~H~l~l~l~~~~vwCy~Cd~~V~~~~l~~ 119 (279)
|..|+.+++|++++++.+.++|||.|+++|.|++|.+
T Consensus 79 ~~~H~~~~~h~~~~~~~~~~~~c~~~~~~v~d~~l~~ 115 (476)
T 3mhs_A 79 FLSHSKQIGHIFGINSNNGLLFCFKCEDYIGNIDLIN 115 (476)
T ss_dssp HHHHHHHHCCCEEEETTTCCEEETTTTEEECSCHHHH
T ss_pred HHHHhcccCCcEEEECCCCcEEeCCCCCCcccHHHHH
Confidence 9999999999999999999999999999999998754
No 15
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=69.02 E-value=5.5 Score=28.22 Aligned_cols=26 Identities=27% Similarity=0.855 Sum_probs=21.7
Q ss_pred CCCCCCCCCCCCCe--eeecccCceeccc
Q 023654 184 PDTPCNRCQHPRGN--WLCLCCKEVLCSR 210 (279)
Q Consensus 184 ~~~~C~~C~~~~~l--W~CL~Cg~vgCgr 210 (279)
...+|..|.....+ ..| .||.++|++
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg~~FC~~ 41 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKC-KCGSTFCGS 41 (64)
T ss_dssp CSCSCTTTCCCCTTSCEEC-TTSCEECSS
T ss_pred cCCcChhhCCcccccCeEe-ecCCEeccc
Confidence 56799999987554 789 899999996
No 16
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=65.96 E-value=6.7 Score=27.76 Aligned_cols=26 Identities=23% Similarity=0.795 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCCCe--eeecccCceeccc
Q 023654 184 PDTPCNRCQHPRGN--WLCLCCKEVLCSR 210 (279)
Q Consensus 184 ~~~~C~~C~~~~~l--W~CL~Cg~vgCgr 210 (279)
...+|..|.....+ ..| .||.++|++
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg~~FC~~ 41 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMC-RCGTTFCGS 41 (64)
T ss_dssp SCCCCTTTCCCCCTTCEEC-SSSCEECTT
T ss_pred cCCcChhhCCccCccCEEe-ecCCEeccc
Confidence 56899999987554 789 799999986
No 17
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=58.08 E-value=8.7 Score=27.95 Aligned_cols=26 Identities=27% Similarity=0.761 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCCCe--eeecccCceeccc
Q 023654 184 PDTPCNRCQHPRGN--WLCLCCKEVLCSR 210 (279)
Q Consensus 184 ~~~~C~~C~~~~~l--W~CL~Cg~vgCgr 210 (279)
...+|..|.....+ ..| .||.++|+.
T Consensus 24 ~~~RC~~C~kkvgL~~f~C-rCg~~FCs~ 51 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKC-RCGSTFCGT 51 (74)
T ss_dssp CCCBCSSSCCBCTTTCEEC-TTSCEECTT
T ss_pred cCccchhhcCcccccceEe-ccCCEeccc
Confidence 55789999877554 889 899999986
No 18
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=55.27 E-value=11 Score=38.53 Aligned_cols=58 Identities=26% Similarity=0.629 Sum_probs=44.4
Q ss_pred CCCCCCCCC--CCCeeeecccCceeeccc---ccchhhhhhhccCCe-EEEE----cCCCcEEEcCCC
Q 023654 52 DTPCNMCKH--PRGNWLCLCCKEVLCSRY---VNKHMLRHYREKNHS-VALD----YSDLSVWCFACH 109 (279)
Q Consensus 52 ~~~C~~C~~--~~~lwvCL~Cg~~~Cgr~---~~~Ha~~H~~~t~H~-l~l~----l~~~~vwCy~Cd 109 (279)
...|.+|+. ...+-.|++|+.-+|-.. ..+|...|-..+.|- +.++ +++..+=||.|.
T Consensus 11 ~~~c~yc~~~~~~~~~~c~~~~~wfcn~~~~~~~shi~~hl~~~~~~~~~l~~~~~~~~~~~~c~~c~ 78 (802)
T 2xzl_A 11 DNSCAYCGIDSAKCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCG 78 (802)
T ss_dssp -CCCTTTCCCCTTTEEEETTTCCEEECCCSSSSSCHHHHHHHHHTCCCEEECTTSSSCSCBCCCSSSC
T ss_pred hhhCcccCCCCCceEEEeCCCCcEecCCCCCCCccHHHHHHHHccCCeeeccCCCCCCCceeEeecCC
Confidence 468999964 578999999999999642 468999998888774 4444 345678899997
No 19
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=54.79 E-value=14 Score=26.02 Aligned_cols=26 Identities=27% Similarity=0.841 Sum_probs=20.9
Q ss_pred CCCCCCCCCCCCCe--eeecccCceeecc
Q 023654 51 PDTPCNMCKHPRGN--WLCLCCKEVLCSR 77 (279)
Q Consensus 51 ~~~~C~~C~~~~~l--wvCL~Cg~~~Cgr 77 (279)
...+|..|....++ +.| .|+..+|+.
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg~~FC~~ 41 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKC-KCGSTFCGS 41 (64)
T ss_dssp CSCSCTTTCCCCTTSCEEC-TTSCEECSS
T ss_pred cCCcChhhCCcccccCeEe-ecCCEeccc
Confidence 34689999776555 789 899999986
No 20
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.06 E-value=10 Score=27.06 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=21.5
Q ss_pred CCCCCCCCCCCCe-----eeecccCceeecc
Q 023654 52 DTPCNMCKHPRGN-----WLCLCCKEVLCSR 77 (279)
Q Consensus 52 ~~~C~~C~~~~~l-----wvCL~Cg~~~Cgr 77 (279)
..+|..|....++ +.| .||..+|+.
T Consensus 15 ~~rC~~C~kk~gL~~~egf~C-rCg~~FC~~ 44 (67)
T 1x4w_A 15 RRRCFQCQTKLELVQQELGSC-RCGYVFCML 44 (67)
T ss_dssp TTBCSSSCCBCCHHHHHHHCC-SSSCCCCTT
T ss_pred CCcchhhCCeecccccCceEe-cCCCEehhc
Confidence 4689999887777 589 999999986
No 21
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=52.50 E-value=16 Score=25.76 Aligned_cols=26 Identities=23% Similarity=0.856 Sum_probs=20.8
Q ss_pred CCCCCCCCCCCCCe--eeecccCceeecc
Q 023654 51 PDTPCNMCKHPRGN--WLCLCCKEVLCSR 77 (279)
Q Consensus 51 ~~~~C~~C~~~~~l--wvCL~Cg~~~Cgr 77 (279)
...+|..|....++ +.| .|+..+|+.
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg~~FC~~ 41 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMC-RCGTTFCGS 41 (64)
T ss_dssp SCCCCTTTCCCCCTTCEEC-SSSCEECTT
T ss_pred cCCcChhhCCccCccCEEe-ecCCEeccc
Confidence 35689999776554 789 799999986
No 22
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=50.83 E-value=16 Score=26.52 Aligned_cols=25 Identities=28% Similarity=0.776 Sum_probs=20.4
Q ss_pred CCCCCCCCCCCCe--eeecccCceeecc
Q 023654 52 DTPCNMCKHPRGN--WLCLCCKEVLCSR 77 (279)
Q Consensus 52 ~~~C~~C~~~~~l--wvCL~Cg~~~Cgr 77 (279)
..+|..|....++ +.| .|+..+|+.
T Consensus 25 ~~RC~~C~kkvgL~~f~C-rCg~~FCs~ 51 (74)
T 1wfp_A 25 ATRCLSCNKKVGVTGFKC-RCGSTFCGT 51 (74)
T ss_dssp CCBCSSSCCBCTTTCEEC-TTSCEECTT
T ss_pred CccchhhcCcccccceEe-ccCCEeccc
Confidence 4689999766555 889 899999986
No 23
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.16 E-value=6.7 Score=28.02 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=22.3
Q ss_pred CCCCCCCCCCCCCe-----eeecccCceeccc
Q 023654 184 PDTPCNRCQHPRGN-----WLCLCCKEVLCSR 210 (279)
Q Consensus 184 ~~~~C~~C~~~~~l-----W~CL~Cg~vgCgr 210 (279)
...+|..|.....+ ..| .||.++|+.
T Consensus 14 ~~~rC~~C~kk~gL~~~egf~C-rCg~~FC~~ 44 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQELGSC-RCGYVFCML 44 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHHHCC-SSSCCCCTT
T ss_pred cCCcchhhCCeecccccCceEe-cCCCEehhc
Confidence 45789999998777 589 999999986
No 24
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=43.41 E-value=25 Score=35.96 Aligned_cols=60 Identities=23% Similarity=0.540 Sum_probs=46.2
Q ss_pred CCCCCCCCCCC--CCeeeecccCceecccC---CChHHHHHhhhcCCeeEEe-----CCCccEEECCCCc
Q 023654 184 PDTPCNRCQHP--RGNWLCLCCKEVLCSRY---VNKHMLQHYQETNHSVALG-----YSDLSVWCFACHA 243 (279)
Q Consensus 184 ~~~~C~~C~~~--~~lW~CL~Cg~vgCgr~---~~~Ha~~H~~~~~H~l~v~-----l~t~~v~CY~Cd~ 243 (279)
....|.-|+.. .-+-.|++|++-+|-.. ...|...|...+.|--+.- +++..+=||.|..
T Consensus 10 ~~~~c~yc~~~~~~~~~~c~~~~~wfcn~~~~~~~shi~~hl~~~~~~~~~l~~~~~~~~~~~~c~~c~~ 79 (802)
T 2xzl_A 10 SDNSCAYCGIDSAKCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGR 79 (802)
T ss_dssp --CCCTTTCCCCTTTEEEETTTCCEEECCCSSSSSCHHHHHHHHHTCCCEEECTTSSSCSCBCCCSSSCC
T ss_pred ChhhCcccCCCCCceEEEeCCCCcEecCCCCCCCccHHHHHHHHccCCeeeccCCCCCCCceeEeecCCC
Confidence 45789999987 77888999999999755 4589999998887754432 4556888999973
No 25
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=39.75 E-value=37 Score=25.19 Aligned_cols=25 Identities=24% Similarity=0.728 Sum_probs=19.9
Q ss_pred CCCCCCCCCCCCe---eeecccCceeecc
Q 023654 52 DTPCNMCKHPRGN---WLCLCCKEVLCSR 77 (279)
Q Consensus 52 ~~~C~~C~~~~~l---wvCL~Cg~~~Cgr 77 (279)
..+|..|....++ +.| .||..+|++
T Consensus 25 ~~rC~~C~kkvgl~~~f~C-rCg~~FC~~ 52 (85)
T 1wff_A 25 MKHCFLCGKKTGLATSFEC-RCGNNFCAS 52 (85)
T ss_dssp CCBCSSSCCBCSSSSCEEC-TTCCEECTT
T ss_pred CccchhhCCeecccCCeEc-CCCCEeccc
Confidence 4689999765554 789 699999986
No 26
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=38.90 E-value=17 Score=27.13 Aligned_cols=26 Identities=23% Similarity=0.654 Sum_probs=20.8
Q ss_pred CCCCCCCCCCCCC---eeeecccCceeccc
Q 023654 184 PDTPCNRCQHPRG---NWLCLCCKEVLCSR 210 (279)
Q Consensus 184 ~~~~C~~C~~~~~---lW~CL~Cg~vgCgr 210 (279)
...+|..|+.... ...| .||.++|++
T Consensus 24 ~~~rC~~C~kkvgl~~~f~C-rCg~~FC~~ 52 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFEC-RCGNNFCAS 52 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEEC-TTCCEECTT
T ss_pred cCccchhhCCeecccCCeEc-CCCCEeccc
Confidence 4578999998644 4789 599999987
No 27
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=33.77 E-value=62 Score=22.26 Aligned_cols=54 Identities=17% Similarity=0.294 Sum_probs=30.0
Q ss_pred CCeeeecccCceecccCCChHHHHHhhhcCCeeEEeCCCccEEECCCC-ceechhHHhhhcchhhHHHHHhhC
Q 023654 195 RGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACH-AYLNAQAILQLQPVHETAYVLKFG 266 (279)
Q Consensus 195 ~~lW~CL~Cg~vgCgr~~~~Ha~~H~~~~~H~l~v~l~t~~v~CY~Cd-~~V~~~~~~~l~~~~~~~h~~~fg 266 (279)
...+.|-.|+..+-.. .....|... | .+....-|-.|+ .|.....+ ..|++..-
T Consensus 34 ~~~~~C~~C~~~f~~~---~~l~~H~~~--h-----~~~~~~~C~~C~~~f~~~~~l--------~~H~~~h~ 88 (96)
T 2dmd_A 34 VKPYKCKTCDYAAADS---SSLNKHLRI--H-----SDERPFKCQICPYASRNSSQL--------TVHLRSHT 88 (96)
T ss_dssp CCSEECSSSCCEESSH---HHHHHHHHH--S-----CCCCCEECSSSSCEESSHHHH--------HHHHTTCC
T ss_pred CCCEeCCCCCCccCCH---HHHHHHHHH--h-----CCCCCccCCCCCCccCCHHHH--------HHHHHHhc
Confidence 3567888888776543 334444332 1 122346688888 55555443 56765543
No 28
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=33.34 E-value=37 Score=34.77 Aligned_cols=59 Identities=17% Similarity=0.388 Sum_probs=46.4
Q ss_pred CCCCCCCCCCC--CCeeeecccCceecccC---CChHHHHHhhhcCCeeEEe-----CCCccEEECCCC
Q 023654 184 PDTPCNRCQHP--RGNWLCLCCKEVLCSRY---VNKHMLQHYQETNHSVALG-----YSDLSVWCFACH 242 (279)
Q Consensus 184 ~~~~C~~C~~~--~~lW~CL~Cg~vgCgr~---~~~Ha~~H~~~~~H~l~v~-----l~t~~v~CY~Cd 242 (279)
....|.-|+.. .-+-.|++|++-+|... ...|...|...+.|--+.- +++..+=||.|.
T Consensus 5 ~~~~c~~c~~~~~~~~~~~~~~~~~fcn~~~~~~~shi~~h~~~~~~~~~~~~~~~~~~~~~~ec~~c~ 73 (800)
T 2wjy_A 5 PIHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCG 73 (800)
T ss_dssp CTTSCTTTCCCCGGGEEEETTTTEEEESCCTTSSSCHHHHHHHHHTCCCEEECTTSTTCSCBCCCTTTC
T ss_pred CchhccccCCCCCCeEEEcCCCCCccccCCCCCcccHHHHHHHHccCceEecCCCCCCCCceEEEeccC
Confidence 35789999987 67788999999999755 4689999998887754432 345688899997
No 29
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=30.97 E-value=29 Score=35.47 Aligned_cols=58 Identities=19% Similarity=0.428 Sum_probs=44.4
Q ss_pred CCCCCCCCCC--CCeeeecccCceeeccc---ccchhhhhhhccCCe-EEEEc----CCCcEEEcCCC
Q 023654 52 DTPCNMCKHP--RGNWLCLCCKEVLCSRY---VNKHMLRHYREKNHS-VALDY----SDLSVWCFACH 109 (279)
Q Consensus 52 ~~~C~~C~~~--~~lwvCL~Cg~~~Cgr~---~~~Ha~~H~~~t~H~-l~l~l----~~~~vwCy~Cd 109 (279)
...|.+|+.. ..+-.|+.|+.-+|-.. ..+|...|--.+.|- +.++- ++..+=||.|.
T Consensus 6 ~~~c~~c~~~~~~~~~~~~~~~~~fcn~~~~~~~shi~~h~~~~~~~~~~~~~~~~~~~~~~ec~~c~ 73 (800)
T 2wjy_A 6 IHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCG 73 (800)
T ss_dssp TTSCTTTCCCCGGGEEEETTTTEEEESCCTTSSSCHHHHHHHHHTCCCEEECTTSTTCSCBCCCTTTC
T ss_pred chhccccCCCCCCeEEEcCCCCCccccCCCCCcccHHHHHHHHccCceEecCCCCCCCCceEEEeccC
Confidence 4689999654 68889999999999642 468999998888774 44442 34678899996
No 30
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=29.19 E-value=52 Score=23.81 Aligned_cols=26 Identities=23% Similarity=0.742 Sum_probs=20.4
Q ss_pred CCCCCCCCCCCCC--eeeecccCceeccc
Q 023654 184 PDTPCNRCQHPRG--NWLCLCCKEVLCSR 210 (279)
Q Consensus 184 ~~~~C~~C~~~~~--lW~CL~Cg~vgCgr 210 (279)
...+|..|...-. ...|- ||.++|+.
T Consensus 24 ~~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~ 51 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCR-CGNLFCGL 51 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECT-TSCEECSS
T ss_pred cCCcChhhCCcccccCeecC-CCCEechh
Confidence 4568999988633 36788 99999986
No 31
>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription; 2.30A {Thermococcus kodakarensis} SCOP: c.52.4.1
Probab=27.49 E-value=28 Score=29.75 Aligned_cols=48 Identities=21% Similarity=0.447 Sum_probs=31.2
Q ss_pred ChHHHHHhhhcCCeeEEeCCCccEE----ECCCCceechhHHhhhcchhhHHHHHhhCCCCCCC
Q 023654 213 NKHMLQHYQETNHSVALGYSDLSVW----CFACHAYLNAQAILQLQPVHETAYVLKFGRALPFL 272 (279)
Q Consensus 213 ~~Ha~~H~~~~~H~l~v~l~t~~v~----CY~Cd~~V~~~~~~~l~~~~~~~h~~~fg~~~~~~ 272 (279)
.|--.+|.++.. ++=.+.-.| |-.|+.|||-+.+ +.||++.||++..-
T Consensus 132 GgrlieHlK~~~----~~GqDyvFWQFYKCe~CgKYvDId~~--------~~Hlk~Hg~~v~e~ 183 (226)
T 2czr_A 132 GAALVNHIKNNA----LAGQDYIFWQFYKCEECGKYVDIENL--------EAHLREHGIKLHEK 183 (226)
T ss_dssp HHHHHHHHHTTC----CBTTTEEEEEEEECTTTCCEEEGGGH--------HHHHHTTTCCGGGC
T ss_pred hHHHHHHHHhcc----ccCcceEEEEEEehhhcCceecHHHH--------HHHHHHcCcchhhc
Confidence 455667766531 222233333 7779999987654 79999999987543
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=26.09 E-value=33 Score=25.18 Aligned_cols=48 Identities=25% Similarity=0.483 Sum_probs=31.9
Q ss_pred CCCCCCCCCC-CCeeeecccCceecccCCChHHHHHhhhcCCeeEEeCCCccEEECCCCceech
Q 023654 185 DTPCNRCQHP-RGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYLNA 247 (279)
Q Consensus 185 ~~~C~~C~~~-~~lW~CL~Cg~vgCgr~~~~Ha~~H~~~~~H~l~v~l~t~~v~CY~Cd~~V~~ 247 (279)
...|..|... .+.-.|+.|||++|.. .....+...+ .-|-.|...+..
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~FC~~----Ci~~~~~~~~-----------~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKLCCFS----CIRRWLTEQR-----------AQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHH----HHHHHHHHTC-----------SBCTTTCCBCCG
T ss_pred CCCCccCCccccCccccCCCCChhhHH----HHHHHHHHCc-----------CCCCCCCCcCCH
Confidence 3668888875 5556669999999964 5555554432 357777765543
No 33
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=26.00 E-value=16 Score=27.65 Aligned_cols=54 Identities=17% Similarity=0.344 Sum_probs=33.5
Q ss_pred ccccccccccchhhhhhhccc-c--cCCCCCCCCCCCCCCC-------CCeeeecccCceeccc
Q 023654 157 ESGSVRHLTSCDHLVASLSTD-L--ARIPNPDTPCNRCQHP-------RGNWLCLCCKEVLCSR 210 (279)
Q Consensus 157 ~~~~~~~~~~C~Hl~~~l~~~-~--~~~~~~~~~C~~C~~~-------~~lW~CL~Cg~vgCgr 210 (279)
+..|......||--...+... . ..+......|..|... ....+.+.||+++|..
T Consensus 41 i~~~~~~~~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~ 104 (133)
T 4ap4_A 41 LRDSLKNANTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQ 104 (133)
T ss_dssp HHHHHTTCSBCTTTCCBCTTTCEEECBCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHH
T ss_pred HHHHHHhCCCCCCCCCcCccccccccccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHH
Confidence 344544445777764444332 1 2233467789999875 2345889999999964
No 34
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=25.16 E-value=37 Score=24.97 Aligned_cols=26 Identities=27% Similarity=0.762 Sum_probs=21.6
Q ss_pred CCCCCCCCCC------CCeeeecccCceeccc
Q 023654 185 DTPCNRCQHP------RGNWLCLCCKEVLCSR 210 (279)
Q Consensus 185 ~~~C~~C~~~------~~lW~CL~Cg~vgCgr 210 (279)
...|..|+.. ...|.|-.||+...|.
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCEEECC
T ss_pred cCcCCCCCCcceeccCCCeEECCCCCCEecCC
Confidence 4678888874 6789999999998886
No 35
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=24.57 E-value=29 Score=22.70 Aligned_cols=12 Identities=17% Similarity=0.495 Sum_probs=8.4
Q ss_pred eeeecccCceec
Q 023654 197 NWLCLCCKEVLC 208 (279)
Q Consensus 197 lW~CL~Cg~vgC 208 (279)
.|+|..||+|.=
T Consensus 4 ~y~C~vCGyvyd 15 (46)
T 6rxn_A 4 KYVCNVCGYEYD 15 (46)
T ss_dssp CEEETTTCCEEC
T ss_pred EEECCCCCeEEe
Confidence 577777777764
No 36
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.69 E-value=47 Score=22.29 Aligned_cols=27 Identities=15% Similarity=0.392 Sum_probs=21.3
Q ss_pred CCCCCCCCCCCCCeeeecccCceeccc
Q 023654 184 PDTPCNRCQHPRGNWLCLCCKEVLCSR 210 (279)
Q Consensus 184 ~~~~C~~C~~~~~lW~CL~Cg~vgCgr 210 (279)
....|..|...-..-+-+.|||++|..
T Consensus 19 ~~~~C~IC~~~~~~~~~~~CgH~fC~~ 45 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTIDCGHNFCLK 45 (73)
T ss_dssp CCCBCTTTCSBCSSEEECTTCCEEEHH
T ss_pred cCCEeccCCcccCCeEEcCCCChhhHH
Confidence 457899999876666667999999954
No 37
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.94 E-value=81 Score=21.46 Aligned_cols=29 Identities=21% Similarity=0.597 Sum_probs=24.1
Q ss_pred CCCCCCCCCCCCCCCCeeeecccCceeccc
Q 023654 181 IPNPDTPCNRCQHPRGNWLCLCCKEVLCSR 210 (279)
Q Consensus 181 ~~~~~~~C~~C~~~~~lW~CL~Cg~vgCgr 210 (279)
++.....|..|+. ...+.|..|+.-.|+-
T Consensus 8 ~~~~~~~C~vC~~-~~kY~CPrC~~~yCSl 36 (56)
T 2yqq_A 8 LKCSTVVCVICLE-KPKYRCPACRVPYCSV 36 (56)
T ss_dssp CCCCCCCCTTTCS-CCSEECTTTCCEESSH
T ss_pred cCCCCCccCcCcC-CCeeeCCCCCCCeeCH
Confidence 3334457999999 9999999999999975
No 38
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.49 E-value=49 Score=21.65 Aligned_cols=27 Identities=15% Similarity=0.392 Sum_probs=20.3
Q ss_pred CCCCCCCCCCCCCeeeecccCceeccc
Q 023654 184 PDTPCNRCQHPRGNWLCLCCKEVLCSR 210 (279)
Q Consensus 184 ~~~~C~~C~~~~~lW~CL~Cg~vgCgr 210 (279)
....|..|...-..-+=|.|||++|..
T Consensus 19 ~~~~C~IC~~~~~~p~~~~CgH~fC~~ 45 (63)
T 2ysj_A 19 EEVICPICLDILQKPVTIDCGHNFCLK 45 (63)
T ss_dssp CCCBCTTTCSBCSSCEECTTSSEECHH
T ss_pred cCCCCCcCCchhCCeEEeCCCCcchHH
Confidence 457799998765555557999999954
No 39
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=21.90 E-value=52 Score=26.49 Aligned_cols=23 Identities=22% Similarity=0.580 Sum_probs=19.6
Q ss_pred CCCCCCCCCC-----CCeeeecccCcee
Q 023654 185 DTPCNRCQHP-----RGNWLCLCCKEVL 207 (279)
Q Consensus 185 ~~~C~~C~~~-----~~lW~CL~Cg~vg 207 (279)
...|-.|... .++|+|..|++.-
T Consensus 27 lP~CP~C~seytYeDg~l~vCPeC~hEW 54 (138)
T 2akl_A 27 LPPCPQCNSEYTYEDGALLVCPECAHEW 54 (138)
T ss_dssp SCCCTTTCCCCCEECSSSEEETTTTEEE
T ss_pred CCCCCCCCCcceEecCCeEECCcccccc
Confidence 4679999886 7899999999976
No 40
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=21.90 E-value=45 Score=23.77 Aligned_cols=38 Identities=21% Similarity=0.589 Sum_probs=28.2
Q ss_pred CCCCCCCC---CCCeeeecccCceeecccccchhhh-hhhcc---CCeE
Q 023654 53 TPCNMCKH---PRGNWLCLCCKEVLCSRYVNKHMLR-HYREK---NHSV 94 (279)
Q Consensus 53 ~~C~~C~~---~~~lwvCL~Cg~~~Cgr~~~~Ha~~-H~~~t---~H~l 94 (279)
-.|..|.. ..-.-.||+|...+|.. |... |.+.. .|.|
T Consensus 31 v~C~~C~~~~~~~A~ksCl~C~~s~C~~----hl~~~H~~~~~~~~H~L 75 (78)
T 2ffw_A 31 VLCQFCDQDPAQDAVKTCVTCEVSYCDE----CLKATHPNKKPFTGHRL 75 (78)
T ss_dssp CBCSSCCSSSCCBCCEEETTTTEEECHH----HHHHHSCCCSSSCSCCC
T ss_pred ccCCcCCCCCCCCCeeEccCccchhhhh----hhHhhcCCCCCCCCCcc
Confidence 46999953 44677899999999964 9886 86643 5654
No 41
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=21.52 E-value=88 Score=20.56 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=20.6
Q ss_pred CCCCCCCCCCCCCe-eeecccCceeccc
Q 023654 184 PDTPCNRCQHPRGN-WLCLCCKEVLCSR 210 (279)
Q Consensus 184 ~~~~C~~C~~~~~l-W~CL~Cg~vgCgr 210 (279)
....|..|...-.. -+-+.||+++|..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~ 31 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYV 31 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTT
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHH
Confidence 45679999887443 5788999999954
No 42
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=21.44 E-value=50 Score=21.46 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=20.0
Q ss_pred CCCCCCCCCCCCCeeeecccCceecccC
Q 023654 184 PDTPCNRCQHPRGNWLCLCCKEVLCSRY 211 (279)
Q Consensus 184 ~~~~C~~C~~~~~lW~CL~Cg~vgCgr~ 211 (279)
....|..|...-..-+-|.||+.+|..-
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~C 32 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGC 32 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTT
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHH
Confidence 3466888887655556688999998654
No 43
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Probab=20.52 E-value=67 Score=22.46 Aligned_cols=37 Identities=19% Similarity=0.585 Sum_probs=26.8
Q ss_pred CCCCCCCCCCCCCCCeeeecccCce-ecccCCChHHHHHhhh
Q 023654 182 PNPDTPCNRCQHPRGNWLCLCCKEV-LCSRYVNKHMLQHYQE 222 (279)
Q Consensus 182 ~~~~~~C~~C~~~~~lW~CL~Cg~v-gCgr~~~~Ha~~H~~~ 222 (279)
......|..|+. .++..|-.|..+ .|++ .+...|+..
T Consensus 12 ~~~~~~C~~C~~-~~~~~Cs~Ck~v~YCs~---eCQ~~~W~~ 49 (70)
T 2d8q_A 12 APERPRCAYCSA-EASKRCSRCQNEWYCCR---ECQVKHWEK 49 (70)
T ss_dssp CCCCCBCSSSCC-BCCCBCTTTSCCBCSCH---HHHHHTHHH
T ss_pred cCCCCcCCCCCC-cccccCCCCCCEeeCCH---HHhHHHHHH
Confidence 345678999988 467788888877 7877 566666654
No 44
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=20.33 E-value=48 Score=22.45 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=16.6
Q ss_pred CCCCCC-------CCCCeeeecccCceeec
Q 023654 54 PCNMCK-------HPRGNWLCLCCKEVLCS 76 (279)
Q Consensus 54 ~C~~C~-------~~~~lwvCL~Cg~~~Cg 76 (279)
.|..|. ...+.++|..||.+.=.
T Consensus 13 ~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~e 42 (58)
T 1dl6_A 13 TCPNHPDAILVEDYRAGDMICPECGLVVGD 42 (58)
T ss_dssp SBTTBSSSCCEECSSSCCEECTTTCCEECC
T ss_pred cCcCCCCCceeEeCCCCeEEeCCCCCEEec
Confidence 577773 35678899999988743
Done!