BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023655
         (279 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1KGZ|A Chain A, Crystal Structure Analysis Of The Anthranilate
           Phosphoribosyltransferase From Erwinia Carotovora
           (current Name, Pectobacterium Carotovorum)
 pdb|1KGZ|B Chain B, Crystal Structure Analysis Of The Anthranilate
           Phosphoribosyltransferase From Erwinia Carotovora
           (current Name, Pectobacterium Carotovorum)
 pdb|1KHD|A Chain A, Crystal Structure Analysis Of The Anthranilate
           Phosphoribosyltransferase From Erwinia Carotovora At 1.9
           Resolution (Current Name, Pectobacterium Carotovorum)
 pdb|1KHD|B Chain B, Crystal Structure Analysis Of The Anthranilate
           Phosphoribosyltransferase From Erwinia Carotovora At 1.9
           Resolution (Current Name, Pectobacterium Carotovorum)
 pdb|1KHD|C Chain C, Crystal Structure Analysis Of The Anthranilate
           Phosphoribosyltransferase From Erwinia Carotovora At 1.9
           Resolution (Current Name, Pectobacterium Carotovorum)
 pdb|1KHD|D Chain D, Crystal Structure Analysis Of The Anthranilate
           Phosphoribosyltransferase From Erwinia Carotovora At 1.9
           Resolution (Current Name, Pectobacterium Carotovorum)
          Length = 345

 Score =  181 bits (459), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 86/209 (41%), Positives = 133/209 (63%), Gaps = 1/209 (0%)

Query: 13  DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXX-DVLEALGVVID 71
           D  DIVGTGGDG N++NIST ++ +AA+CGAKVAK              D+L+A G+ +D
Sbjct: 85  DFADIVGTGGDGTNSINISTASAFVAASCGAKVAKHGNRSVCQPLAGSCDLLQAFGIRLD 144

Query: 72  LDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVV 131
           +  E  R+ +D+  + F+ + +YH   +   PVR++LK +T+FN+LGP++NPA  P A++
Sbjct: 145 MSAEDSRQALDDLNVCFLFAPQYHTGFRHAMPVRQQLKTRTIFNVLGPLINPARPPKALI 204

Query: 132 GVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDY 191
           GVY+  LVL +A AL+  G K A VVH  G+DE++   P  + ++   +IE +   P D+
Sbjct: 205 GVYSPELVLPIAQALKVLGYKNAAVVHGGGMDEVAIHTPTQVAELNNGEIESYQLSPQDF 264

Query: 192 GIPRCTLESLQGGGPAYNAEVLRRVLSGE 220
           G+   +L +LQGG P  N ++L R+L G+
Sbjct: 265 GLQSYSLNALQGGTPEENRDILARLLQGK 293


>pdb|1V8G|A Chain A, Crystal Structure Of Anthranilate
           Phosphoribosyltransferase (Trpd) From Thermus
           Thermophilus Hb8
 pdb|1V8G|B Chain B, Crystal Structure Of Anthranilate
           Phosphoribosyltransferase (Trpd) From Thermus
           Thermophilus Hb8
 pdb|2ELC|A Chain A, Crystal Structure Of Ttha1842 From Thermus Thermophilus
           Hb8
 pdb|2ELC|B Chain B, Crystal Structure Of Ttha1842 From Thermus Thermophilus
           Hb8
 pdb|2ELC|C Chain C, Crystal Structure Of Ttha1842 From Thermus Thermophilus
           Hb8
 pdb|2ELC|D Chain D, Crystal Structure Of Ttha1842 From Thermus Thermophilus
           Hb8
          Length = 329

 Score =  168 bits (425), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 107/256 (41%), Positives = 152/256 (59%), Gaps = 6/256 (2%)

Query: 15  VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDP 74
           +DIVGTGGDG   +N+ST A+++AAA G  VAK             D+LEALGV ++  P
Sbjct: 74  LDIVGTGGDGKGLMNLSTLAALVAAAGGVAVAKHGNRAASSRAGSADLLEALGVDLEAPP 133

Query: 75  EGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVY 134
           E V   ++E G GF+ +  +HPAM+ V PVR +L V+TVFN+LGP+ NPA     V+GV+
Sbjct: 134 ERVGEAIEELGFGFLFARVFHPAMRHVAPVRAELGVRTVFNLLGPLTNPAGADAYVLGVF 193

Query: 135 NENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIP 194
           +   +  MA AL+R G  R LVVH EG DE+  LG   +++V +     ++  P + G+ 
Sbjct: 194 SPEWLAPMAEALERLG-ARGLVVHGEGADELV-LGENRVVEVGKGA---YALTPEEVGLK 248

Query: 195 RCTLESLQGGGPAYNAEVLRRVLSG-ERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAR 253
           R  LE+L+GGGP  NA + RR+L G E+G                + K  +L EGVALAR
Sbjct: 249 RAPLEALKGGGPEENAALARRLLKGEEKGPLADAVALAAGAGFYAAGKTPSLKEGVALAR 308

Query: 254 EIQLSGKALNTLDLWI 269
           E+  SG+A   L+ ++
Sbjct: 309 EVLASGEAYLLLERYV 324


>pdb|4HKM|A Chain A, Crystal Structure Of An Anthranilate
           Phosphoribosyltransferase (Target Id Nysgrc-016600) From
           Xanthomonas Campestris
 pdb|4HKM|B Chain B, Crystal Structure Of An Anthranilate
           Phosphoribosyltransferase (Target Id Nysgrc-016600) From
           Xanthomonas Campestris
          Length = 346

 Score =  144 bits (364), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 101/261 (38%), Positives = 144/261 (55%), Gaps = 3/261 (1%)

Query: 15  VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDP 74
           VDIVGTGGDG++T NIST A  +AAA GAKVAK             D LEALG VI+L P
Sbjct: 81  VDIVGTGGDGSHTFNISTCAXFVAAAGGAKVAKHGNRSVSSKSGSADALEALGAVIELQP 140

Query: 75  EGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVY 134
           E V   + + GIGF  +  +HPA K V PVR++  V+T+FNILGP+ NPA  P  + GV+
Sbjct: 141 EQVAASLAQTGIGFXYAPVHHPAXKVVAPVRREXGVRTIFNILGPLTNPAGSPNILXGVF 200

Query: 135 NENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPG-LILDVTQEKIERFSFDPLDYG 192
           + +LV   A  LQ  G +RALVV   +G DE+S LG G L+ ++   ++  +   P D+G
Sbjct: 201 HPDLVGIQARVLQELGAERALVVWGRDGXDELS-LGAGTLVGELRDGQVHEYEVHPEDFG 259

Query: 193 IPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALA 252
           I      +L+    A +   L +VL    G               V+   +++A+G+  A
Sbjct: 260 IAXSASRNLKVADAAESRAXLLQVLDNVPGPALDIVALNAGAALYVAGVADSIADGIVRA 319

Query: 253 REIQLSGKALNTLDLWIEVSK 273
           R++   G A   LD ++  ++
Sbjct: 320 RQVLADGSARACLDAYVAFTQ 340


>pdb|1VQU|A Chain A, Crystal Structure Of Anthranilate
           Phosphoribosyltransferase 2 (17130499) From Nostoc Sp.
           At 1.85 A Resolution
 pdb|1VQU|B Chain B, Crystal Structure Of Anthranilate
           Phosphoribosyltransferase 2 (17130499) From Nostoc Sp.
           At 1.85 A Resolution
          Length = 374

 Score =  142 bits (357), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 80/210 (38%), Positives = 124/210 (59%), Gaps = 7/210 (3%)

Query: 15  VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDP 74
           +D  GTGGDG++T NIST  + +AAA G  VAK             DVLEALGV +   P
Sbjct: 111 IDTCGTGGDGSSTFNISTAVAFVAAAYGVPVAKHGNRSASSLTGSADVLEALGVNLGASP 170

Query: 75  EGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVY 134
           E V+  + E GI F+ +  +HPA+K V  +R+ L+++TVFN+LGP++NP      VVG++
Sbjct: 171 EKVQAALQEVGITFLFAPGWHPALKAVATLRRTLRIRTVFNLLGPLVNPLRPTGQVVGLF 230

Query: 135 NENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILD---VTQEKIERFSFDPLD 190
              L+  +A AL   G ++A+V+H  E LDE    G G + D   ++  +++  + +P +
Sbjct: 231 TPKLLTTVAQALDNLGKQKAIVLHGRERLDEA---GLGDLTDLAVLSDGELQLTTINPQE 287

Query: 191 YGIPRCTLESLQGGGPAYNAEVLRRVLSGE 220
            G+    + +L+GG    NAE+L+ VL G+
Sbjct: 288 VGVTPAPIGALRGGDVQENAEILKAVLQGK 317


>pdb|2BPQ|A Chain A, Anthranilate Phosphoribosyltransferase (Trpd) From
           Mycobacterium Tuberculosis (Apo Structure)
 pdb|2BPQ|B Chain B, Anthranilate Phosphoribosyltransferase (Trpd) From
           Mycobacterium Tuberculosis (Apo Structure)
          Length = 373

 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/213 (42%), Positives = 121/213 (56%), Gaps = 6/213 (2%)

Query: 13  DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDL 72
           DAVD+VGTGGDG NTVN+ST A+I+ AA G  V K             D LEALGV IDL
Sbjct: 101 DAVDVVGTGGDGVNTVNLSTMAAIVVAAAGVPVVKHGNRAASSLSGGADTLEALGVRIDL 160

Query: 73  DPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVG 132
            P+ V R + E GIGF  + ++HP+ +    VR+++ V TVFN+LGP+ NPA     ++G
Sbjct: 161 GPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARPRAGLIG 220

Query: 133 VYNENLVLKMANALQRFGLKRA--LVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPL 189
               +L   MA     F  +R+  LVVH  +GLDE++      I  V    +++ +FDP 
Sbjct: 221 CAFADLAEVMAGV---FAARRSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPA 277

Query: 190 DYGIPRCTLESLQGGGPAYNAEVLRRVLSGERG 222
            +G  R  L+ L GG    NA  +R VL G RG
Sbjct: 278 GFGFARAQLDQLAGGDAQANAAAVRAVLGGARG 310


>pdb|3QR9|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From
           Mycobacterium Tuberculosis (apo Structure)
 pdb|3QR9|B Chain B, Anthranilate Phosphoribosyltransferase (trpd) From
           Mycobacterium Tuberculosis (apo Structure)
 pdb|3QQS|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From
           Mycobacterium Tuberculosis (complex With Inhibitor
           Acs172)
 pdb|3QQS|B Chain B, Anthranilate Phosphoribosyltransferase (trpd) From
           Mycobacterium Tuberculosis (complex With Inhibitor
           Acs172)
 pdb|3QQS|C Chain C, Anthranilate Phosphoribosyltransferase (trpd) From
           Mycobacterium Tuberculosis (complex With Inhibitor
           Acs172)
 pdb|3QQS|D Chain D, Anthranilate Phosphoribosyltransferase (trpd) From
           Mycobacterium Tuberculosis (complex With Inhibitor
           Acs172)
 pdb|3QS8|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From
           Mycobacterium Tuberculosis (complex With Inhibitor
           Acs174)
 pdb|3QS8|B Chain B, Anthranilate Phosphoribosyltransferase (trpd) From
           Mycobacterium Tuberculosis (complex With Inhibitor
           Acs174)
 pdb|3QS8|C Chain C, Anthranilate Phosphoribosyltransferase (trpd) From
           Mycobacterium Tuberculosis (complex With Inhibitor
           Acs174)
 pdb|3QS8|D Chain D, Anthranilate Phosphoribosyltransferase (trpd) From
           Mycobacterium Tuberculosis (complex With Inhibitor
           Acs174)
 pdb|3QSA|A Chain A, Anthranilate Phosphoribosyltransferase (Trpd) From
           Mycobacterium Tuberculosis (Complex With Inhibitor
           Tamu-A7)
 pdb|3QSA|B Chain B, Anthranilate Phosphoribosyltransferase (Trpd) From
           Mycobacterium Tuberculosis (Complex With Inhibitor
           Tamu-A7)
 pdb|3R6C|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From
           Mycobacterium Tuberculosis (complex With Inhibitor
           Acs179)
 pdb|3R6C|B Chain B, Anthranilate Phosphoribosyltransferase (trpd) From
           Mycobacterium Tuberculosis (complex With Inhibitor
           Acs179)
 pdb|3R88|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From
           Mycobacterium Tuberculosis (complex With Inhibitor
           Acs145)
 pdb|3R88|B Chain B, Anthranilate Phosphoribosyltransferase (trpd) From
           Mycobacterium Tuberculosis (complex With Inhibitor
           Acs145)
 pdb|3TWP|A Chain A, Crystal Structure Of M. Tuberculosis Trpd In Complex With
           An Inhibitor
 pdb|3TWP|B Chain B, Crystal Structure Of M. Tuberculosis Trpd In Complex With
           An Inhibitor
 pdb|3TWP|C Chain C, Crystal Structure Of M. Tuberculosis Trpd In Complex With
           An Inhibitor
 pdb|3TWP|D Chain D, Crystal Structure Of M. Tuberculosis Trpd In Complex With
           An Inhibitor
 pdb|3UU1|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From
           Mycobacterium Tuberculosis (complex With Inhibitor
           Acs142)
 pdb|3UU1|B Chain B, Anthranilate Phosphoribosyltransferase (trpd) From
           Mycobacterium Tuberculosis (complex With Inhibitor
           Acs142)
 pdb|3UU1|C Chain C, Anthranilate Phosphoribosyltransferase (trpd) From
           Mycobacterium Tuberculosis (complex With Inhibitor
           Acs142)
 pdb|3UU1|D Chain D, Anthranilate Phosphoribosyltransferase (trpd) From
           Mycobacterium Tuberculosis (complex With Inhibitor
           Acs142)
          Length = 377

 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/213 (42%), Positives = 121/213 (56%), Gaps = 6/213 (2%)

Query: 13  DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDL 72
           DAVD+VGTGGDG NTVN+ST A+I+ AA G  V K             D LEALGV IDL
Sbjct: 100 DAVDVVGTGGDGVNTVNLSTMAAIVVAAAGVPVVKHGNRAASSLSGGADTLEALGVRIDL 159

Query: 73  DPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVG 132
            P+ V R + E GIGF  + ++HP+ +    VR+++ V TVFN+LGP+ NPA     ++G
Sbjct: 160 GPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARPRAGLIG 219

Query: 133 VYNENLVLKMANALQRFGLKRA--LVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPL 189
               +L   MA     F  +R+  LVVH  +GLDE++      I  V    +++ +FDP 
Sbjct: 220 CAFADLAEVMAGV---FAARRSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPA 276

Query: 190 DYGIPRCTLESLQGGGPAYNAEVLRRVLSGERG 222
            +G  R  L+ L GG    NA  +R VL G RG
Sbjct: 277 GFGFARAQLDQLAGGDAQANAAAVRAVLGGARG 309


>pdb|1ZVW|A Chain A, The Crystal Structure Of Trpd (Rv2192c) From Mycobacterium
           Tuberculosis In Complex With Prpp And Magnesium
 pdb|1ZVW|B Chain B, The Crystal Structure Of Trpd (Rv2192c) From Mycobacterium
           Tuberculosis In Complex With Prpp And Magnesium
          Length = 378

 Score =  133 bits (335), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 89/213 (41%), Positives = 120/213 (56%), Gaps = 6/213 (2%)

Query: 13  DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDL 72
           DAVD+VGTGGDG NTVN+ST A+I+ AA G  V K             D LEALGV IDL
Sbjct: 101 DAVDVVGTGGDGVNTVNLSTXAAIVVAAAGVPVVKHGNRAASSLSGGADTLEALGVRIDL 160

Query: 73  DPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVG 132
            P+ V R + E GIGF  + ++HP+ +    VR+++ V TVFN+LGP+ NPA     ++G
Sbjct: 161 GPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARPRAGLIG 220

Query: 133 VYNENLVLKMANALQRFGLKRA--LVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPL 189
               +L    A     F  +R+  LVVH  +GLDE++      I  V    +++ +FDP 
Sbjct: 221 CAFADLAEVXAGV---FAARRSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPA 277

Query: 190 DYGIPRCTLESLQGGGPAYNAEVLRRVLSGERG 222
            +G  R  L+ L GG    NA  +R VL G RG
Sbjct: 278 GFGFARAQLDQLAGGDAQANAAAVRAVLGGARG 310


>pdb|1O17|A Chain A, Anthranilate Phosphoribosyl-Transferase (Trpd)
 pdb|1O17|B Chain B, Anthranilate Phosphoribosyl-Transferase (Trpd)
 pdb|1O17|C Chain C, Anthranilate Phosphoribosyl-Transferase (Trpd)
 pdb|1O17|D Chain D, Anthranilate Phosphoribosyl-Transferase (Trpd)
 pdb|1GXB|A Chain A, Anthranilate Phosphoribosyltransferase In Complex With
           Pyrophosphate And Magnesium
 pdb|1GXB|B Chain B, Anthranilate Phosphoribosyltransferase In Complex With
           Pyrophosphate And Magnesium
 pdb|1GXB|C Chain C, Anthranilate Phosphoribosyltransferase In Complex With
           Pyrophosphate And Magnesium
 pdb|1GXB|D Chain D, Anthranilate Phosphoribosyltransferase In Complex With
           Pyrophosphate And Magnesium
 pdb|1ZXY|A Chain A, Anthranilate Phosphoribosyltransferase From Sulfolobus
           Solfataricus In Complex With Prpp And Magnesium
 pdb|1ZXY|B Chain B, Anthranilate Phosphoribosyltransferase From Sulfolobus
           Solfataricus In Complex With Prpp And Magnesium
 pdb|1ZXY|C Chain C, Anthranilate Phosphoribosyltransferase From Sulfolobus
           Solfataricus In Complex With Prpp And Magnesium
 pdb|1ZXY|D Chain D, Anthranilate Phosphoribosyltransferase From Sulfolobus
           Solfataricus In Complex With Prpp And Magnesium
 pdb|1ZYK|A Chain A, Anthranilate Phosphoribosyltransferase In Complex With
           Prpp, Anthranilate And Magnesium
 pdb|1ZYK|B Chain B, Anthranilate Phosphoribosyltransferase In Complex With
           Prpp, Anthranilate And Magnesium
 pdb|1ZYK|C Chain C, Anthranilate Phosphoribosyltransferase In Complex With
           Prpp, Anthranilate And Magnesium
 pdb|1ZYK|D Chain D, Anthranilate Phosphoribosyltransferase In Complex With
           Prpp, Anthranilate And Magnesium
 pdb|2GVQ|A Chain A, Anthranilate Phosphoribosyl-Transferase (Trpd) From S.
           Solfataricus In Complex With Anthranilate
 pdb|2GVQ|B Chain B, Anthranilate Phosphoribosyl-Transferase (Trpd) From S.
           Solfataricus In Complex With Anthranilate
 pdb|2GVQ|C Chain C, Anthranilate Phosphoribosyl-Transferase (Trpd) From S.
           Solfataricus In Complex With Anthranilate
 pdb|2GVQ|D Chain D, Anthranilate Phosphoribosyl-Transferase (Trpd) From S.
           Solfataricus In Complex With Anthranilate
          Length = 345

 Score =  127 bits (318), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 72/202 (35%), Positives = 116/202 (57%), Gaps = 3/202 (1%)

Query: 1   MIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXX 60
           M + A K++ + +A+D  GTGGDG  TVN+ST ++IL +     VAK             
Sbjct: 62  MRELAIKID-VPNAIDTAGTGGDGLGTVNVSTASAILLSLVNP-VAKHGNRAVSGKSGSA 119

Query: 61  DVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPM 120
           DVLEALG  I + PE  +  V++    F+ +  YHPAMK V  VRK L ++T+FNILGP+
Sbjct: 120 DVLEALGYNIIVPPERAKELVNKTNFVFLFAQYYHPAMKNVANVRKTLGIRTIFNILGPL 179

Query: 121 LNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSE-GLDEMSPLGPGLILDVTQE 179
            NPA   + ++GV++++ +  ++ +       + ++V+ E G+DE+SP+G   +  V++ 
Sbjct: 180 TNPANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYGEPGIDEVSPIGNTFMKIVSKR 239

Query: 180 KIERFSFDPLDYGIPRCTLESL 201
            IE    +  D+GI    +E L
Sbjct: 240 GIEEVKLNVTDFGISPIPIEKL 261


>pdb|3GBR|A Chain A, Anthranilate Phosphoribosyl-Transferase (Trpd) Double
           Mutant D83g F149s From S. Solfataricus
 pdb|3GBR|B Chain B, Anthranilate Phosphoribosyl-Transferase (Trpd) Double
           Mutant D83g F149s From S. Solfataricus
          Length = 345

 Score =  108 bits (269), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 115/202 (56%), Gaps = 3/202 (1%)

Query: 1   MIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXX 60
           M + A K++ + +A+D  GTGG G  TVN+ST ++IL +     VAK             
Sbjct: 62  MRELAIKID-VPNAIDTAGTGGGGLGTVNVSTASAILLSLVNP-VAKHGNRAVSGKSGSA 119

Query: 61  DVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPM 120
           DVLEALG  I + PE  +  V++    F+ +  YHPAMK V  VRK L ++T+FNILGP+
Sbjct: 120 DVLEALGYNIIVPPERAKELVNKTNFVFLSAQYYHPAMKNVANVRKTLGIRTIFNILGPL 179

Query: 121 LNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSE-GLDEMSPLGPGLILDVTQE 179
            NPA   + ++GV++++ +  ++ +       + ++V+ E G+DE+SP+G   +  V++ 
Sbjct: 180 TNPANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYGEPGIDEVSPIGNTFMKIVSKR 239

Query: 180 KIERFSFDPLDYGIPRCTLESL 201
            IE    +  D+GI    +E L
Sbjct: 240 GIEEVKLNVTDFGISPIPIEKL 261


>pdb|2W48|A Chain A, Crystal Structure Of The Full-Length Sorbitol Operon
           Regulator Sorc From Klebsiella Pneumoniae
 pdb|2W48|B Chain B, Crystal Structure Of The Full-Length Sorbitol Operon
           Regulator Sorc From Klebsiella Pneumoniae
 pdb|2W48|C Chain C, Crystal Structure Of The Full-Length Sorbitol Operon
           Regulator Sorc From Klebsiella Pneumoniae
 pdb|2W48|D Chain D, Crystal Structure Of The Full-Length Sorbitol Operon
           Regulator Sorc From Klebsiella Pneumoniae
          Length = 315

 Score = 33.1 bits (74), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 112 TVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGL---DEMSPL 168
           T+  +L        V  A+   YNENL L+     Q+FGLK A+V  S+GL   +++S +
Sbjct: 37  TISRLLKRGREQGIVTIAINYDYNENLWLEQ-QLKQKFGLKEAVVASSDGLLEEEQLSAM 95

Query: 169 G 169
           G
Sbjct: 96  G 96


>pdb|3EFB|A Chain A, Crystal Structure Of Probable Sor Operon Regulator From
           Shigella Flexneri
 pdb|3EFB|B Chain B, Crystal Structure Of Probable Sor Operon Regulator From
           Shigella Flexneri
 pdb|3EFB|C Chain C, Crystal Structure Of Probable Sor Operon Regulator From
           Shigella Flexneri
 pdb|3EFB|D Chain D, Crystal Structure Of Probable Sor Operon Regulator From
           Shigella Flexneri
          Length = 266

 Score = 28.5 bits (62), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 126 VPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPL 168
           V  A+   YNENL L+     Q+FGLK  +VV     DE + L
Sbjct: 2   VTIAINYDYNENLWLEQ-QLKQKFGLKDVVVVSGNDEDEETQL 43


>pdb|3Q3V|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From
           Campylobacter Jejuni.
 pdb|3Q3V|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From
           Campylobacter Jejuni
          Length = 403

 Score = 28.1 bits (61), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 4   YATKVEGLGDAVDIVGTGGDGANTVNISTG 33
           +AT V G GD  D+V   GD      ISTG
Sbjct: 349 HATSVVGGGDTADVVARAGDADEXTFISTG 378


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.138    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,231,944
Number of Sequences: 62578
Number of extensions: 257970
Number of successful extensions: 613
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 590
Number of HSP's gapped (non-prelim): 20
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)