Query 023655
Match_columns 279
No_of_seqs 150 out of 1135
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 05:39:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023655.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023655hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0547 TrpD Anthranilate phos 100.0 8.3E-82 1.8E-86 577.1 31.1 274 1-274 63-338 (338)
2 PLN02641 anthranilate phosphor 100.0 2.8E-79 6E-84 565.7 30.4 274 1-274 62-335 (343)
3 PRK07394 hypothetical protein; 100.0 1.3E-76 2.7E-81 548.9 30.8 266 1-269 68-341 (342)
4 TIGR01245 trpD anthranilate ph 100.0 3.1E-74 6.8E-79 532.1 29.9 270 1-270 56-329 (330)
5 PRK00188 trpD anthranilate pho 100.0 2.1E-73 4.5E-78 528.6 31.3 275 1-275 62-338 (339)
6 PRK09522 bifunctional glutamin 100.0 1.2E-73 2.6E-78 555.4 29.5 269 1-270 259-529 (531)
7 PRK14607 bifunctional glutamin 100.0 2.1E-73 4.6E-78 556.3 30.5 274 1-274 254-530 (534)
8 PF00591 Glycos_transf_3: Glyc 100.0 2.8E-74 6E-79 515.0 19.1 250 13-262 2-252 (252)
9 PRK08136 glycosyl transferase 100.0 2.6E-68 5.7E-73 487.4 25.1 244 1-250 66-316 (317)
10 KOG1438 Anthranilate phosphori 100.0 1.2E-67 2.6E-72 460.0 18.7 262 12-273 102-370 (373)
11 PRK09071 hypothetical protein; 100.0 1.2E-65 2.5E-70 471.8 26.4 247 1-259 67-318 (323)
12 PRK06078 pyrimidine-nucleoside 100.0 5.6E-49 1.2E-53 370.6 24.3 237 1-276 62-320 (434)
13 TIGR02644 Y_phosphoryl pyrimid 100.0 1.5E-43 3.3E-48 331.6 21.1 235 1-276 60-318 (405)
14 PRK04350 thymidine phosphoryla 100.0 3.8E-42 8.2E-47 327.3 23.2 236 1-275 140-395 (490)
15 PRK05820 deoA thymidine phosph 100.0 1.2E-36 2.5E-41 287.6 16.3 242 1-276 63-324 (440)
16 TIGR02643 T_phosphoryl thymidi 100.0 5.4E-36 1.2E-40 281.8 14.2 242 1-276 62-323 (437)
17 TIGR02645 ARCH_P_rylase putati 100.0 5.5E-35 1.2E-39 278.2 20.7 241 1-276 145-401 (493)
18 TIGR03327 AMP_phos AMP phospho 100.0 1.1E-33 2.5E-38 269.2 19.9 241 1-276 146-401 (500)
19 COG0213 DeoA Thymidine phospho 99.9 3.3E-24 7.1E-29 198.3 14.9 231 12-276 77-321 (435)
20 PF13344 Hydrolase_6: Haloacid 75.8 2.4 5.3E-05 32.3 2.5 58 14-71 2-59 (101)
21 PRK10444 UMP phosphatase; Prov 70.9 11 0.00025 33.4 5.9 71 14-84 5-80 (248)
22 COG2313 IndA Uncharacterized e 69.4 10 0.00023 34.0 5.2 118 18-146 102-255 (310)
23 COG1393 ArsC Arsenate reductas 68.0 5 0.00011 31.7 2.7 90 66-159 6-99 (117)
24 TIGR01457 HAD-SF-IIA-hyp2 HAD- 66.0 61 0.0013 28.6 9.6 72 14-85 5-81 (249)
25 PF02374 ArsA_ATPase: Anion-tr 65.8 4.7 0.0001 37.1 2.5 45 16-65 5-49 (305)
26 PRK05703 flhF flagellar biosyn 61.1 82 0.0018 30.4 10.1 135 13-158 222-366 (424)
27 COG3473 Maleate cis-trans isom 54.8 37 0.0008 29.8 5.8 98 31-161 56-153 (238)
28 TIGR01458 HAD-SF-IIA-hyp3 HAD- 54.3 32 0.0007 30.6 5.7 73 14-86 5-86 (257)
29 COG0563 Adk Adenylate kinase a 53.3 50 0.0011 27.8 6.5 89 17-110 5-105 (178)
30 COG2313 IndA Uncharacterized e 52.0 1.1E+02 0.0024 27.7 8.4 25 132-156 207-231 (310)
31 COG1212 KdsB CMP-2-keto-3-deox 51.9 1.8E+02 0.0038 26.0 10.4 163 70-257 48-243 (247)
32 PRK12928 lipoyl synthase; Prov 50.9 57 0.0012 29.8 6.8 109 35-154 156-275 (290)
33 cd00443 ADA_AMPD Adenosine/AMP 50.2 87 0.0019 28.6 8.1 121 15-150 139-274 (305)
34 COG0106 HisA Phosphoribosylfor 49.7 71 0.0015 28.5 7.0 82 72-156 31-127 (241)
35 cd02117 NifH_like This family 49.5 13 0.00027 31.9 2.3 32 15-48 3-34 (212)
36 COG0773 MurC UDP-N-acetylmuram 48.1 99 0.0021 30.3 8.2 131 15-159 10-142 (459)
37 COG0240 GpsA Glycerol-3-phosph 46.4 1.3E+02 0.0028 28.2 8.5 80 29-145 11-91 (329)
38 cd02032 Bchl_like This family 45.9 14 0.00031 32.7 2.1 31 16-48 4-34 (267)
39 PRK12723 flagellar biosynthesi 45.7 2.8E+02 0.006 26.5 10.9 129 13-158 175-321 (388)
40 cd02037 MRP-like MRP (Multiple 45.0 19 0.00042 29.5 2.6 31 18-50 6-36 (169)
41 PF00448 SRP54: SRP54-type pro 45.0 88 0.0019 26.7 6.8 130 15-158 4-149 (196)
42 PRK11889 flhF flagellar biosyn 44.8 3.1E+02 0.0066 26.7 10.9 131 13-158 242-386 (436)
43 PRK13230 nitrogenase reductase 44.5 16 0.00034 32.8 2.1 33 15-49 4-36 (279)
44 cd00287 ribokinase_pfkB_like r 44.2 94 0.002 25.4 6.8 15 35-49 43-57 (196)
45 TIGR01287 nifH nitrogenase iro 43.4 17 0.00036 32.5 2.1 31 15-47 3-33 (275)
46 PRK12724 flagellar biosynthesi 43.3 2.7E+02 0.006 27.1 10.4 130 14-158 225-368 (432)
47 PLN02428 lipoic acid synthase 43.1 1.2E+02 0.0027 28.6 7.9 111 34-154 197-318 (349)
48 TIGR00676 fadh2 5,10-methylene 42.3 52 0.0011 29.6 5.2 71 77-160 20-96 (272)
49 TIGR00677 fadh2_euk methylenet 42.2 58 0.0013 29.6 5.5 70 78-160 22-97 (281)
50 COG0489 Mrp ATPases involved i 42.1 18 0.0004 32.5 2.2 33 17-51 63-95 (265)
51 cd02040 NifH NifH gene encodes 40.2 19 0.00042 31.7 2.0 31 15-47 4-34 (270)
52 cd01983 Fer4_NifH The Fer4_Nif 39.8 24 0.00051 25.0 2.2 31 17-49 4-34 (99)
53 PF02310 B12-binding: B12 bind 39.6 1.4E+02 0.0029 22.6 6.6 75 73-163 39-115 (121)
54 PRK13232 nifH nitrogenase redu 38.6 21 0.00046 31.8 2.0 33 15-49 4-36 (273)
55 PF11501 Nsp1: Non structural 38.6 29 0.00063 26.4 2.4 23 239-261 17-39 (115)
56 PF02641 DUF190: Uncharacteriz 37.6 50 0.0011 25.0 3.7 30 134-163 17-47 (101)
57 PRK04531 acetylglutamate kinas 37.0 1.2E+02 0.0025 29.2 6.9 98 38-161 62-174 (398)
58 TIGR00510 lipA lipoate synthas 36.4 1E+02 0.0023 28.3 6.2 109 35-154 159-278 (302)
59 TIGR02016 BchX chlorophyllide 36.2 27 0.00058 31.9 2.3 35 16-52 4-38 (296)
60 PF00142 Fer4_NifH: 4Fe-4S iro 36.1 21 0.00046 32.4 1.6 36 15-52 3-38 (273)
61 PRK13185 chlL protochlorophyll 36.1 26 0.00056 31.1 2.2 75 15-92 5-89 (270)
62 CHL00072 chlL photochlorophyll 35.6 28 0.0006 31.7 2.3 34 16-51 4-37 (290)
63 cd00537 MTHFR Methylenetetrahy 35.4 97 0.0021 27.7 5.8 73 75-160 18-96 (274)
64 PRK13236 nitrogenase reductase 35.3 28 0.00061 31.7 2.3 76 14-92 8-93 (296)
65 PF08844 DUF1815: Domain of un 35.3 1.9E+02 0.0042 21.9 6.3 48 141-194 21-69 (105)
66 COG1348 NifH Nitrogenase subun 35.2 46 0.001 29.9 3.5 61 15-77 4-74 (278)
67 PF01656 CbiA: CobQ/CobB/MinD/ 35.1 26 0.00056 28.9 1.9 30 18-49 5-34 (195)
68 TIGR01007 eps_fam capsular exo 34.9 67 0.0015 27.0 4.5 33 13-47 18-51 (204)
69 PRK12726 flagellar biosynthesi 34.8 2.1E+02 0.0045 27.6 8.1 82 13-98 207-300 (407)
70 KOG4201 Anthranilate synthase 34.6 1.2E+02 0.0026 26.9 5.8 118 69-187 88-223 (289)
71 PRK09432 metF 5,10-methylenete 34.2 97 0.0021 28.4 5.6 46 102-160 75-120 (296)
72 PF14207 DpnD-PcfM: DpnD/PcfM- 33.9 44 0.00096 22.1 2.4 19 242-260 18-36 (48)
73 COG1936 Predicted nucleotide k 33.2 43 0.00093 28.5 2.9 26 15-46 3-28 (180)
74 PF13207 AAA_17: AAA domain; P 33.0 31 0.00066 26.2 1.9 25 17-46 4-28 (121)
75 PF07429 Glyco_transf_56: 4-al 32.9 1.4E+02 0.003 28.2 6.5 94 36-149 261-356 (360)
76 PLN02645 phosphoglycolate phos 32.8 67 0.0015 29.4 4.4 72 14-85 32-108 (311)
77 KOG3347 Predicted nucleotide k 32.4 41 0.00089 28.1 2.5 30 15-49 10-39 (176)
78 cd02036 MinD Bacterial cell di 32.3 35 0.00075 27.7 2.2 31 18-50 6-36 (179)
79 PRK09435 membrane ATPase/prote 32.2 93 0.002 29.1 5.3 44 13-58 57-100 (332)
80 PF07131 DUF1382: Protein of u 31.9 43 0.00093 23.1 2.1 23 76-98 14-36 (61)
81 PRK10853 putative reductase; P 31.9 36 0.00077 26.7 2.1 53 66-118 5-59 (118)
82 COG0003 ArsA Predicted ATPase 31.8 39 0.00085 31.5 2.7 46 15-65 5-50 (322)
83 PRK14491 putative bifunctional 31.6 2.4E+02 0.0052 28.6 8.4 39 13-53 11-51 (597)
84 TIGR01281 DPOR_bchL light-inde 31.3 34 0.00073 30.3 2.1 30 17-48 5-34 (268)
85 TIGR01082 murC UDP-N-acetylmur 31.2 2.5E+02 0.0054 26.9 8.3 128 17-159 4-134 (448)
86 cd00550 ArsA_ATPase Oxyanion-t 31.0 31 0.00068 30.6 1.8 42 17-63 5-46 (254)
87 PF04227 Indigoidine_A: Indigo 30.9 85 0.0018 28.9 4.6 116 18-158 89-220 (293)
88 COG0761 lytB 4-Hydroxy-3-methy 30.6 1.1E+02 0.0023 28.1 5.2 74 35-108 107-184 (294)
89 TIGR00017 cmk cytidylate kinas 30.3 3.6E+02 0.0078 23.3 9.1 121 15-160 5-128 (217)
90 cd01423 MGS_CPS_I_III Methylgl 29.0 1.3E+02 0.0028 23.0 4.8 53 31-91 15-77 (116)
91 TIGR03029 EpsG chain length de 28.8 39 0.00085 30.0 2.1 30 17-48 109-138 (274)
92 PRK13235 nifH nitrogenase redu 28.8 39 0.00084 30.1 2.1 32 15-48 4-35 (274)
93 COG3804 Uncharacterized conser 28.8 46 0.001 30.6 2.5 114 17-151 7-124 (350)
94 TIGR01459 HAD-SF-IIA-hyp4 HAD- 28.7 1.2E+02 0.0025 26.5 5.1 57 13-70 11-67 (242)
95 TIGR03499 FlhF flagellar biosy 28.6 2.3E+02 0.005 25.5 7.1 67 13-83 195-269 (282)
96 PF08444 Gly_acyl_tr_C: Aralky 28.3 28 0.0006 26.2 0.9 51 40-90 23-79 (89)
97 PRK12339 2-phosphoglycerate ki 28.2 55 0.0012 28.0 2.8 32 14-50 5-36 (197)
98 PTZ00413 lipoate synthase; Pro 28.0 3.2E+02 0.0069 26.3 8.0 112 33-154 243-366 (398)
99 TIGR01616 nitro_assoc nitrogen 27.6 39 0.00084 26.9 1.6 56 66-121 6-63 (126)
100 TIGR00044 pyridoxal phosphate 27.4 1.3E+02 0.0029 26.1 5.2 84 72-158 38-126 (229)
101 cd02035 ArsA ArsA ATPase funct 27.1 43 0.00094 28.8 2.0 34 17-52 4-37 (217)
102 PRK12737 gatY tagatose-bisphos 26.8 73 0.0016 29.1 3.5 34 18-53 180-213 (284)
103 TIGR01452 PGP_euk phosphoglyco 26.5 97 0.0021 27.7 4.2 70 14-83 6-80 (279)
104 PF03960 ArsC: ArsC family; I 26.3 45 0.00098 25.4 1.8 90 67-159 2-95 (110)
105 COG3640 CooC CO dehydrogenase 26.2 46 0.001 29.8 2.0 32 15-48 3-35 (255)
106 PRK14723 flhF flagellar biosyn 26.1 7.9E+02 0.017 25.9 12.8 86 13-105 186-285 (767)
107 COG0654 UbiH 2-polyprenyl-6-me 25.9 87 0.0019 29.4 4.0 39 30-68 13-60 (387)
108 PLN02540 methylenetetrahydrofo 25.9 1.3E+02 0.0029 30.2 5.4 70 78-160 21-96 (565)
109 PRK00162 glpE thiosulfate sulf 25.8 1.9E+02 0.0041 21.4 5.2 84 71-159 6-91 (108)
110 PRK12857 fructose-1,6-bisphosp 25.2 84 0.0018 28.7 3.6 33 21-54 182-214 (284)
111 cd03035 ArsC_Yffb Arsenate Red 25.2 49 0.0011 25.3 1.8 53 67-119 5-59 (105)
112 COG0771 MurD UDP-N-acetylmuram 25.1 54 0.0012 32.0 2.4 36 17-54 113-148 (448)
113 PF03721 UDPG_MGDP_dh_N: UDP-g 25.0 71 0.0015 27.0 2.9 25 15-46 3-27 (185)
114 PRK07261 topology modulation p 24.4 82 0.0018 26.0 3.1 30 15-49 3-32 (171)
115 PRK08118 topology modulation p 24.2 66 0.0014 26.5 2.5 26 16-46 5-30 (167)
116 PF02142 MGS: MGS-like domain 24.1 55 0.0012 24.2 1.8 50 34-91 5-66 (95)
117 smart00851 MGS MGS-like domain 24.1 2.2E+02 0.0047 20.6 5.1 48 35-90 6-60 (90)
118 COG0647 NagD Predicted sugar p 24.0 3.7E+02 0.008 24.3 7.4 128 13-151 11-147 (269)
119 PF04343 DUF488: Protein of un 23.8 68 0.0015 24.9 2.4 28 72-99 31-58 (122)
120 PRK13809 orotate phosphoribosy 23.8 1.2E+02 0.0025 26.3 4.0 52 33-85 136-189 (206)
121 PF03851 UvdE: UV-endonuclease 23.8 1.4E+02 0.003 27.2 4.7 93 60-161 33-154 (275)
122 PRK10037 cell division protein 23.4 47 0.001 29.2 1.5 26 21-48 11-36 (250)
123 cd04724 Tryptophan_synthase_al 23.4 2.1E+02 0.0046 25.1 5.8 91 66-157 8-110 (242)
124 PRK11670 antiporter inner memb 23.2 54 0.0012 31.0 2.0 31 18-50 114-144 (369)
125 TIGR00629 uvde UV damage endon 23.2 84 0.0018 29.2 3.2 90 61-159 41-161 (312)
126 TIGR01460 HAD-SF-IIA Haloacid 23.1 1.6E+02 0.0035 25.6 4.9 70 14-83 2-77 (236)
127 PF13627 LPAM_2: Prokaryotic l 22.9 64 0.0014 18.1 1.5 14 31-44 5-18 (24)
128 cd03008 TryX_like_RdCVF Trypar 22.9 37 0.00081 27.7 0.8 48 63-113 66-113 (146)
129 PF13344 Hydrolase_6: Haloacid 22.8 36 0.00078 25.7 0.6 60 47-109 10-79 (101)
130 PRK02308 uvsE putative UV dama 22.7 73 0.0016 29.3 2.7 97 61-159 37-154 (303)
131 TIGR01499 folC folylpolyglutam 22.7 44 0.00096 31.5 1.3 37 13-53 19-55 (397)
132 PF07471 Phage_Nu1: Phage DNA 22.6 35 0.00075 28.6 0.5 39 28-66 12-50 (164)
133 TIGR01081 mpl UDP-N-acetylmura 22.5 2.5E+02 0.0055 26.9 6.6 128 17-158 4-136 (448)
134 PF14852 Fis1_TPR_N: Fis1 N-te 22.5 67 0.0014 19.6 1.6 31 229-259 4-34 (35)
135 PHA02518 ParA-like protein; Pr 22.2 56 0.0012 27.3 1.8 30 20-51 9-38 (211)
136 PF01364 Peptidase_C25: Peptid 22.1 1.3E+02 0.0027 28.3 4.3 69 88-161 3-74 (378)
137 PF09140 MipZ: ATPase MipZ; I 21.9 45 0.00098 30.1 1.1 30 19-50 8-37 (261)
138 PRK00771 signal recognition pa 21.8 2.9E+02 0.0064 26.8 6.8 81 13-97 96-189 (437)
139 cd02033 BchX Chlorophyllide re 21.6 69 0.0015 29.9 2.3 37 13-51 32-68 (329)
140 PF14272 Gly_rich_SFCGS: Glyci 21.6 57 0.0012 24.9 1.4 31 15-55 51-81 (115)
141 PF03814 KdpA: Potassium-trans 21.6 40 0.00087 33.6 0.8 67 27-97 174-240 (552)
142 cd03033 ArsC_15kD Arsenate Red 21.5 65 0.0014 25.0 1.9 53 67-119 6-60 (113)
143 PRK09195 gatY tagatose-bisphos 21.3 1.1E+02 0.0023 28.1 3.4 33 21-54 182-214 (284)
144 KOG1116 Sphingosine kinase, in 21.2 1.5E+02 0.0032 29.9 4.5 53 111-163 197-249 (579)
145 PF06564 YhjQ: YhjQ protein; 21.1 71 0.0015 28.5 2.2 31 15-47 4-35 (243)
146 PF13941 MutL: MutL protein 21.0 5.8E+02 0.012 25.1 8.6 117 12-159 125-255 (457)
147 TIGR01969 minD_arch cell divis 20.9 69 0.0015 27.6 2.1 29 18-48 7-35 (251)
148 TIGR03569 NeuB_NnaB N-acetylne 20.8 3.3E+02 0.0071 25.4 6.6 105 31-152 98-218 (329)
149 COG0033 Pgm Phosphoglucomutase 20.7 1E+02 0.0022 30.1 3.3 43 21-63 60-104 (524)
150 TIGR03371 cellulose_yhjQ cellu 20.7 70 0.0015 27.6 2.1 32 19-52 9-40 (246)
151 COG0493 GltD NADPH-dependent g 20.6 7.8E+02 0.017 24.1 9.5 133 13-157 124-292 (457)
152 COG1004 Ugd Predicted UDP-gluc 20.6 51 0.0011 31.7 1.2 67 15-91 3-84 (414)
153 PF00690 Cation_ATPase_N: Cati 20.6 1.5E+02 0.0033 20.3 3.5 35 57-91 4-40 (69)
154 PRK08356 hypothetical protein; 20.6 1E+02 0.0022 25.8 3.1 33 14-52 7-39 (195)
155 PHA01794 hypothetical protein 20.6 1.9E+02 0.004 23.3 4.2 63 209-271 23-100 (134)
156 KOG3022 Predicted ATPase, nucl 20.2 83 0.0018 28.9 2.4 30 17-48 53-82 (300)
157 PRK14722 flhF flagellar biosyn 20.1 7.6E+02 0.016 23.5 10.9 89 13-108 138-240 (374)
158 TIGR01968 minD_bact septum sit 20.0 72 0.0016 27.6 2.0 29 18-48 8-36 (261)
159 TIGR03577 EF_0830 conserved hy 20.0 68 0.0015 24.6 1.5 31 15-55 51-81 (115)
160 PF00538 Linker_histone: linke 20.0 86 0.0019 22.3 2.1 20 134-153 1-20 (77)
No 1
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.3e-82 Score=577.06 Aligned_cols=274 Identities=53% Similarity=0.827 Sum_probs=264.4
Q ss_pred CccccccccCCC-CcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCCCHHHHHH
Q 023655 1 MIKYATKVEGLG-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (279)
Q Consensus 1 ~~~~~~~~~~~~-~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~~~~~~~~ 79 (279)
|++++.+++.+. ..+|+|||||||.+||||||++|+++|++|+||+|||||++||++||+|+||+|||+++.+++++++
T Consensus 63 m~~~~~~~~~p~~~~vDi~GTGGDg~~T~NiSt~aA~v~A~~Gv~VaKHGnrs~sSksGsaDvleaLGv~l~~~~e~~~~ 142 (338)
T COG0547 63 MREHAPKLPVPAADPVDIVGTGGDGANTINISTAAAIVAAAAGVPVAKHGNRSVSSKSGSADVLEALGVNLELSPEQAAR 142 (338)
T ss_pred HHHhcccCCCCCCCCCCeecCCCCCCCcccchHHHHHHHHhCCCcEEeECCCCCCCCCcHHHHHHHcCCCCCCCHHHHHH
Confidence 567777776643 3499999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCeEEEeCCccChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCceEEEEec
Q 023655 80 CVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS 159 (279)
Q Consensus 80 ~l~~~g~~fl~~~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~lvv~G 159 (279)
+|++.||+|||+|.|||+|+++.++|++||+||+||+||||+||+++++||+|||||+|.++++++++.+|.++++||||
T Consensus 143 ~l~~~g~~FlfAp~~hp~~k~v~~vR~~LG~RTifN~LGPL~NPa~~~~qliGV~~p~~~~~~A~~l~~LG~~ralvV~G 222 (338)
T COG0547 143 ALEETGIGFLFAPAYHPAMKHVAPVRKELGVRTIFNLLGPLLNPARAKLQLIGVYHPELVELLAEALRLLGVERALVVHG 222 (338)
T ss_pred HHHhcCeEEEEccccCHHHHHHHHHHHHcCCCchHHhhccccCCCCCCceEEEEeCHHHHHHHHHHHHHhCcceEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCccccccCCCeeEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHH
Q 023655 160 -EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALLV 238 (279)
Q Consensus 160 -eG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~~~~~~~v~~naa~~L~~ 238 (279)
+|+||++|.++|.|+++++|++.+|+++|++||++..++++++++++++|+++++++|+|+.++.+|+|++|+|++||+
T Consensus 223 ~~GlDE~~~~~~t~v~~l~~g~i~~~~l~pe~~Gl~~~~~~~l~~~~~~ena~~~~~vL~G~~~~~~d~v~~Naa~~L~~ 302 (338)
T COG0547 223 LEGLDEVTPTGTTLVAELKDGEIREYTLTPEDFGLERAPLEDLPGGDPEENAEILRAVLAGEEGPARDAVALNAAAALYA 302 (338)
T ss_pred CCCcccccCCCCceEEEEcCCceEEEEeCHHhcCCCCCchhhcCCCCHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred cCcCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcC
Q 023655 239 SCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKV 274 (279)
Q Consensus 239 ~g~~~~~~eg~~~a~~~l~sG~a~~~l~~~~~~~~~ 274 (279)
.|.++|++||+++|+++|+||+|+++|++++.+++.
T Consensus 303 ~g~a~~l~eg~~~A~~~i~sG~a~~~l~~l~~~~~~ 338 (338)
T COG0547 303 AGKAESLKEGIALALEAIDSGAALEKLEELVAFSKS 338 (338)
T ss_pred cCccCCHHHHHHHHHHHHhCcHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999998763
No 2
>PLN02641 anthranilate phosphoribosyltransferase
Probab=100.00 E-value=2.8e-79 Score=565.66 Aligned_cols=274 Identities=82% Similarity=1.209 Sum_probs=264.4
Q ss_pred CccccccccCCCCcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCCCHHHHHHH
Q 023655 1 MIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRC 80 (279)
Q Consensus 1 ~~~~~~~~~~~~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~~~~~~~~~ 80 (279)
|++++.+++...+.+|+|||||||++||||||++|+++|++|+||+|||||++||++||+|+||+|||+++.+++++.++
T Consensus 62 ~~~~~~~~~~~~~~~D~~gtGGdg~~t~nist~aa~v~A~~G~~V~kHGnr~~ss~~GsaDvLeaLGi~~~~~~~~~~~~ 141 (343)
T PLN02641 62 MIKRARKVDGLVDAVDIVGTGGDGANTVNISTGSSILAAACGAKVAKQGNRSSSSACGSADVLEALGVAIDLGPEGVKRC 141 (343)
T ss_pred HHHhCCCCCCCCCCCceeCCCCCCCCccccHHHHHHHHHhCCCeEEEeCCCCCCCccCHHHHHHHcCCCCCCCHHHHHHH
Confidence 46677767644458999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCeEEEeCCccChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCceEEEEecC
Q 023655 81 VDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSE 160 (279)
Q Consensus 81 l~~~g~~fl~~~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~lvv~Ge 160 (279)
|++.||+|+|+|.|||+|++++++|++||+||+||++|||+||+++++||+|||||+|.++|+++++.+|.++++||||+
T Consensus 142 l~~~g~~fl~a~~~hPa~~~~~~~R~~LG~RT~fN~lgpL~NPa~~~~~v~GV~~~~~~~~~a~al~~lG~~~alVv~G~ 221 (343)
T PLN02641 142 VEEVGIGFMMAPKYHPAMKIVAPVRKKLKVKTVFNILGPMLNPARVPHAVVGVYHESLVEKMAKALQRFGMKRALVVHSE 221 (343)
T ss_pred HHhcCcEEEechhhCHHHHHHHHHHHHhCCCcHHHHHHHhcCCCCCCceEEeeeCHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCeeEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHcC
Q 023655 161 GLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALLVSC 240 (279)
Q Consensus 161 G~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~~~~~~~v~~naa~~L~~~g 240 (279)
|+||++|.++|+++++.+|++.+++|+|+|||++.++++++.++++++|+++++++|+|+.++++|+|++|+|++||++|
T Consensus 222 G~DEis~~g~t~v~~~~~g~i~~~~~~p~d~Gl~~~~~~~l~~~~~~~na~~~~~vL~G~~~~~~d~v~lNaa~~L~~~g 301 (343)
T PLN02641 222 GLDEMSPLGPGDVLEVTPEKIEEFSFDPLDFGIPRCTLEDLRGGDPDYNAKVLRDVLSGEKGAIADALILNAAAALLVSG 301 (343)
T ss_pred CCCccccCcceEEEEEeCCceEEEEeCHHHcCCCcCCHHhcCCCCHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999977889999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcC
Q 023655 241 KVNTLAEGVALAREIQLSGKALNTLDLWIEVSKV 274 (279)
Q Consensus 241 ~~~~~~eg~~~a~~~l~sG~a~~~l~~~~~~~~~ 274 (279)
+++|++||+++|+++|+||+|+++|++|++.++.
T Consensus 302 ~~~sl~eg~~~A~~~i~sG~a~~~l~~~~~~~~~ 335 (343)
T PLN02641 302 LAKTLAEGVALARETQESGKAIKTLDSWIKISQE 335 (343)
T ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998764
No 3
>PRK07394 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-76 Score=548.95 Aligned_cols=266 Identities=23% Similarity=0.291 Sum_probs=252.9
Q ss_pred CccccccccCCC--CcceeecCCCCCC-CcccchHHHHHHHHcCCCcEEeeCCCCCCCcCc--HHHHHHHcCCCCCC-CH
Q 023655 1 MIKYATKVEGLG--DAVDIVGTGGDGA-NTVNISTGASILAAACGAKVAKQGSRSSSSACG--SADVLEALGVVIDL-DP 74 (279)
Q Consensus 1 ~~~~~~~~~~~~--~~~D~~gtggdG~-~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~G--s~dvLe~LGi~~~~-~~ 74 (279)
|++++.+++... .++|+|||||||+ +||||||++|+++|++|+||+|||||++||++| |+|+||+|||+++. ++
T Consensus 68 ~~~~~~~~~~~~~~~~~d~~GtggDG~~~t~NiSt~aA~v~A~~Gv~V~kHGnr~~ssk~GvtsaDvLe~LGv~~~~~~~ 147 (342)
T PRK07394 68 YDELGPKLQSPSNQRPPIVFGMPYDGRSRTAPIYPLTALILAAAGQPVVLHGGDRMPTKYGVPLVELWQGLGVDLTGLSL 147 (342)
T ss_pred HHHhCCCCCCCCCCCceeEEeCCCCCCCCCcccHHHHHHHHHHCCCeEEEECCCCCCCCCCchHHHHHHHCCCCCCCCCH
Confidence 466777775432 4789999999997 799999999999999999999999999999999 99999999999998 99
Q ss_pred HHHHHHHHhcCeEEEeCCccChhhhchHHHHhhhCCCChhHhhhhccCC-CCCCceEEeeechhhHHHHHHHHHHcCCce
Q 023655 75 EGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP-ACVPFAVVGVYNENLVLKMANALQRFGLKR 153 (279)
Q Consensus 75 ~~~~~~l~~~g~~fl~~~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP-~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~ 153 (279)
+++.++|++.||+|+|+|.|||+|+++.++|++||+||+||++|||+|| +++++||+|||||+|.++|+++++.+|.++
T Consensus 148 ~~~~~~l~~~g~~Fl~ap~~hP~m~~~~~vR~~Lg~RT~fN~lgpL~NP~a~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~ 227 (342)
T PRK07394 148 EQVQEGFEQTGLAFIYQPDHFPLAESLIPYRDEIGKRPPLATLELIWTPHQGDHHLVSGFVHPPTEARAWEALELRGETN 227 (342)
T ss_pred HHHHHHHHHcCceeeechhhCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCCceEEEeeCHHHHHHHHHHHHHcCCCe
Confidence 9999999999999999999999999999999999999999999999999 689999999999999999999999999999
Q ss_pred EEEEec-CCccccccCCCeeEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhCCCChhHHHHHHHHH
Q 023655 154 ALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNA 232 (279)
Q Consensus 154 ~lvv~G-eG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~~~~~~~v~~na 232 (279)
++|||| ||+||+++.++|.++++++|++++++++|+|||++.. +++++++++|+++++++|+|+.++++++|++||
T Consensus 228 ~~vv~G~~G~dE~s~~~~t~v~~~~~g~i~~~~i~p~d~G~~~~---~l~~~~~~~na~~~~~vl~G~~~~~~~~v~lNa 304 (342)
T PRK07394 228 FTTVKGLEGSCDLPISRTAIIGRVQNGHFERLILHPRDYGCGGK---DVPWESTEEWLEQAQAALNGEPGPLTQALIWNG 304 (342)
T ss_pred EEEEEcCCCceeccCCCCeEEEEEcCCeEEEEEECHHHcCCCcc---cCCCCCHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 999999 9999999999999999999999999999999999864 457889999999999999999877889999999
Q ss_pred HHHHHHcCcCCCHHHHHHHHHHHHHccHHHHHHHHHH
Q 023655 233 AAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWI 269 (279)
Q Consensus 233 a~~L~~~g~~~~~~eg~~~a~~~l~sG~a~~~l~~~~ 269 (279)
|++||++|+++|++||+++|+++|+||+|+++|++|+
T Consensus 305 a~~L~~~g~~~s~~eg~~~A~~~i~sG~a~~~l~~~~ 341 (342)
T PRK07394 305 GFYLWRAGISSSLEEGIEKAEELLNSGKALQKLQQLI 341 (342)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence 9999999999999999999999999999999999996
No 4
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=100.00 E-value=3.1e-74 Score=532.06 Aligned_cols=270 Identities=54% Similarity=0.850 Sum_probs=258.7
Q ss_pred CccccccccC--CCCcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCCCHHHHH
Q 023655 1 MIKYATKVEG--LGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVR 78 (279)
Q Consensus 1 ~~~~~~~~~~--~~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~~~~~~~ 78 (279)
|++++.+++. ..+++|+|||||||++||||||++|+++|++|+||+|||+|++++++|++|+||+|||+++.++++++
T Consensus 56 ~~~~~~~~~~~~~~~~iD~~gtggdg~~t~nist~~a~vlA~~G~~V~kHG~r~~~s~~Gs~d~le~LGi~~~~s~~~~~ 135 (330)
T TIGR01245 56 MREHAVKVPGRPVEDLVDIVGTGGDGANTINISTASAFVAAAAGVKVAKHGNRSVSSKSGSADVLEALGVNLDLGPEKVA 135 (330)
T ss_pred HHHhCCCCCCccCCCcccccCCCCCCCCccccHHHHHHHHHhCCCEEEEeCCCCCCCCccHHHHHHHcCCCCCCCHHHHH
Confidence 3556665643 23579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCeEEEeCCccChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCceEEEEe
Q 023655 79 RCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (279)
Q Consensus 79 ~~l~~~g~~fl~~~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~lvv~ 158 (279)
++|++.||||+++|.|||+|++++++|++||+||+||+++||+||++++++|+|||||+|.++|+++++.+|.++++||+
T Consensus 136 ~~l~~~g~~f~~~~~~~P~~~~l~~lR~~lg~rT~~N~lgpL~NP~~~~~~v~Gv~~~~~~~~~a~~~~~lg~~~~~vv~ 215 (330)
T TIGR01245 136 RSLEETGIGFLFAPLYHPAMKHVAPVRRELGVRTVFNLLGPLTNPARPKYQVIGVYDPDLVEVMAEALKNLGVKRALVVH 215 (330)
T ss_pred HHHHHhCcEEeechhhCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCCEEEcccCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCccccccCCCeeEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHH
Q 023655 159 S-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIADALILNAAAAL 236 (279)
Q Consensus 159 G-eG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~-~~~~~~v~~naa~~L 236 (279)
| ||+||++|.++|+++++++|++.+++|+|++||++..++++++++++++|+++++++|+|+. +++.++|++|+|++|
T Consensus 216 G~~G~dE~s~~~~t~v~~~~~g~~~~~~i~p~~~g~~~~~~~~~~~~~~~~~a~~~~~~l~G~~~~~~~~~v~lnaA~~L 295 (330)
T TIGR01245 216 GDDGLDEISLTGPTTVAELKDGEIREYTLDPEDFGLPRAPLEELAGGSPEENAEILRDILRGKGSGAKRDIVALNAAAAL 295 (330)
T ss_pred CCCCceeecCCCcEEEEEEECCEEEEEeCCHHHcCCCcCCHhhcCCCCHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHH
Confidence 9 99999999999999999999999999999999999988889998899999999999999995 688999999999999
Q ss_pred HHcCcCCCHHHHHHHHHHHHHccHHHHHHHHHHH
Q 023655 237 LVSCKVNTLAEGVALAREIQLSGKALNTLDLWIE 270 (279)
Q Consensus 237 ~~~g~~~~~~eg~~~a~~~l~sG~a~~~l~~~~~ 270 (279)
|+.|+++|++||+++|+++|+||+|+++|++|++
T Consensus 296 ~~~g~~~s~~e~~~~a~~~i~sG~a~~~l~~~~~ 329 (330)
T TIGR01245 296 YVAGRASDLKEGVELALEAIDSGAAAEKLEELVA 329 (330)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHh
Confidence 9999999999999999999999999999999986
No 5
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.1e-73 Score=528.55 Aligned_cols=275 Identities=54% Similarity=0.834 Sum_probs=261.8
Q ss_pred CccccccccCCCCcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCCCHHHHHHH
Q 023655 1 MIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRC 80 (279)
Q Consensus 1 ~~~~~~~~~~~~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~~~~~~~~~ 80 (279)
|++++.+++...+.+|+|||||||++||||||++|+++|++|+||+|||+|++++++||+|+||+||++++.+++++.+.
T Consensus 62 ~~~~~~~~~~~~~~iDi~gtggdg~~t~nis~~~a~vlA~~G~~V~kHG~~~~~s~~GsadvLe~lGi~~~~~~~~~~~~ 141 (339)
T PRK00188 62 MREHAVPVPDPDDAVDIVGTGGDGANTFNISTAAAFVAAAAGVKVAKHGNRSVSSKSGSADVLEALGVNLDLSPEQVARC 141 (339)
T ss_pred HHHhCCcCCCCCCCCcccCCCCCCCCccchHHHHHHHHHhCCCEEEEECCCCCCCCcCHHHHHHHcCCCCCCCHHHHHHH
Confidence 35666666543358999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCeEEEeCCccChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCceEEEEec-
Q 023655 81 VDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS- 159 (279)
Q Consensus 81 l~~~g~~fl~~~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~lvv~G- 159 (279)
|+++||+|+++|.|||+|++++++|++||+||+|||++||+||++++++|+|||||+|.++|+++++.+|.++++||||
T Consensus 142 l~~~g~~fl~a~~~~P~l~~l~~lR~~Lg~Rt~fN~l~~L~NP~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~~~~vv~G~ 221 (339)
T PRK00188 142 LEEVGIGFLFAPLYHPAMKHVAPVRKELGIRTIFNLLGPLTNPARPKRQLIGVYSPDLLEPMAEVLKRLGSKRALVVHGS 221 (339)
T ss_pred HHHcCcEEeeCcccCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCCEEEeecCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCeeEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHHH
Q 023655 160 EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE-RGAIADALILNAAAALLV 238 (279)
Q Consensus 160 eG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~-~~~~~~~v~~naa~~L~~ 238 (279)
||+||++|.++|+++++++|++.++.|+|++||++..+.+++.+.++++|+++++++|+|+ .+++.+.+++|+|++||+
T Consensus 222 ~G~dE~~~~~~t~v~~~~~g~~~~~~i~p~~~Gl~~~~~~~~~~~~~~~~a~~~~~vl~G~~~~~~~~~v~lnaA~~L~~ 301 (339)
T PRK00188 222 DGLDEISLTGPTTVAELKDGEIREYTLTPEDFGLPRAPLEDLRGGDPEENAAILRAVLQGKGPGAARDAVLLNAAAALYV 301 (339)
T ss_pred CCceeecCCCCEEEEEEcCCEEEEEEECHHHcCCCcCCHHhcCCCCHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988777788889999999999999996 478999999999999999
Q ss_pred cCcCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcCC
Q 023655 239 SCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKVN 275 (279)
Q Consensus 239 ~g~~~~~~eg~~~a~~~l~sG~a~~~l~~~~~~~~~~ 275 (279)
+|.++|++||+++|+++|+||+++++|++|++.++.+
T Consensus 302 ~g~~~s~~e~~~~A~~~i~sG~a~~~l~~~~~~~~~~ 338 (339)
T PRK00188 302 AGKADDLKEGVELAREAIDSGAALAKLEELVAFSQEL 338 (339)
T ss_pred cCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999987754
No 6
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.2e-73 Score=555.39 Aligned_cols=269 Identities=38% Similarity=0.659 Sum_probs=257.5
Q ss_pred CccccccccCC-CCcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCCCHHHHHH
Q 023655 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (279)
Q Consensus 1 ~~~~~~~~~~~-~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~~~~~~~~ 79 (279)
|++++.+++.. .+++|+|||||||++||||||++|+++|++|+||+|||||++|+++||+|+||+|||+++.+++++.+
T Consensus 259 ~~~~~~~~~~~~~~~iD~~gtGgdg~~t~nist~aa~v~A~~Gv~V~kHG~r~~ss~~GsadvlealGi~~~~~~~~~~~ 338 (531)
T PRK09522 259 LLENAAPFPRPDYLFADIVGTGGDGSNSINISTASAFVAAACGLKVAKHGNRSVSSKSGSSDLLAAFGINLDMNADKSRQ 338 (531)
T ss_pred HHHhCCCCCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhCCCcEEEeCCCCCCCCccHHHHHHHcCCCCCCCHHHHHH
Confidence 46667766543 34799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCeEEEeCCccChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCceEEEEec
Q 023655 80 CVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS 159 (279)
Q Consensus 80 ~l~~~g~~fl~~~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~lvv~G 159 (279)
+|++.||+|+|+|.|||+|++++++|++||+||+||++|||+||+++++||+|||||+|.++|+++++++|.++++||||
T Consensus 339 ~l~~~g~~fl~ap~~hpam~~~~~~R~~Lg~rT~fN~lgpL~NPa~~~~~v~Gv~~~~~~~~~a~~l~~lG~~~~~vv~G 418 (531)
T PRK09522 339 ALDELGVCFLFAPKYHTGFRHAMPVRQQLKTRTLFNVLGPLINPAHPPLALIGVYSPELVLPIAETLRVLGYQRAAVVHS 418 (531)
T ss_pred HHHHhCcEEEEhhHhCHHHHHHHHHHHHhCCCcHHHHHHHhcCCCCCCcEEEEeeCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCeeEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHHH
Q 023655 160 EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERG-AIADALILNAAAALLV 238 (279)
Q Consensus 160 eG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~~-~~~~~v~~naa~~L~~ 238 (279)
+|+||+|+.++|+|+++++|++++++|+|+|||++..+++++.++++++|+++++++|+|+.. ...++|++|||++||+
T Consensus 419 ~G~DEis~~~~t~v~~~~~g~i~~~~~~P~d~Gl~~~~~~~i~g~~~~~na~~~~~vl~G~~~~~~~~~v~~naa~~l~~ 498 (531)
T PRK09522 419 GGMDEVSLHAPTIVAELHDGEIKSYQLTAEDFGLTPYHQEQLAGGTPEENRDILTRLLQGKGDAAHEAAVAANVAMLMRL 498 (531)
T ss_pred CCccccCCCCceEEEEEcCCeEEEEEECHHHcCCCCCCHHHhcCCCHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999953 4568999999999999
Q ss_pred cCcCCCHHHHHHHHHHHHHccHHHHHHHHHHH
Q 023655 239 SCKVNTLAEGVALAREIQLSGKALNTLDLWIE 270 (279)
Q Consensus 239 ~g~~~~~~eg~~~a~~~l~sG~a~~~l~~~~~ 270 (279)
.|. +|++||+++|+++|+||+|+++|++|++
T Consensus 499 ~g~-~~l~~g~~~a~~~i~sG~a~~~l~~l~~ 529 (531)
T PRK09522 499 HGH-EDLQANAQTVLEVLRSGSAYDRVTALAA 529 (531)
T ss_pred cCC-CCHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 996 8999999999999999999999999986
No 7
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.1e-73 Score=556.27 Aligned_cols=274 Identities=41% Similarity=0.678 Sum_probs=263.2
Q ss_pred CccccccccCC-CCcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCCCHHHHHH
Q 023655 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (279)
Q Consensus 1 ~~~~~~~~~~~-~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~~~~~~~~ 79 (279)
|++++.+++.. .+.+|+|||||||++||||||++|+++|++|+||+|||||++|+++||+|+||+||++++.+++++++
T Consensus 254 ~~~~~~~~~~~~~~~~D~~gtggdg~~t~nist~~a~v~A~~G~~V~kHG~r~~ss~~Gsadvle~lGv~~~~~~~~~~~ 333 (534)
T PRK14607 254 MREKSRHIPAPSPRTVDTCGTGGDGFGTFNISTTSAFVVAAAGVPVAKHGNRAVSSKSGSADVLEALGVKLEMTPEEAAS 333 (534)
T ss_pred HHHhCCcCCCCCCCceEEccCCCCCCCccccHHHHHHHHHhCCCcEEEECCCCCCCCccHHHHHHHcCCCCCCCHHHHHH
Confidence 56777777543 34799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCeEEEeCCccChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCceEEEEec
Q 023655 80 CVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS 159 (279)
Q Consensus 80 ~l~~~g~~fl~~~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~lvv~G 159 (279)
+|++.||+|+++|.|||+|++++++|++||+||+||++|||+||++++++|+|||||+|.++|+++++.+|.++++||||
T Consensus 334 ~l~~~g~~fl~ap~~~p~l~~~~~~R~~Lg~rTifN~lgpL~NP~~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~~~vv~G 413 (534)
T PRK14607 334 VLRETGFSFLFAPLFHPAMKHAAPARRELGIRTAFNLLGPLTNPARVKYQIVGVFDPSYAEPLAQALQRLGTERAMVVSG 413 (534)
T ss_pred HHHHhCcEEeeccccCHHHHHHHHHHHHhCCCcHHHhHHhccCCCCCCcEEEeeCCHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCccccccCCCeeEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHH
Q 023655 160 -EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIADALILNAAAALL 237 (279)
Q Consensus 160 -eG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~-~~~~~~v~~naa~~L~ 237 (279)
||+||++|.++|+++++++|++.++.|+|++||++..+++++.++++++|+++++++|+|+. ++++|+|++|||++||
T Consensus 414 ~~G~dE~s~~~~t~v~~~~~g~i~~~~i~p~~~Gl~~~~~~~~~~~~~~~na~~~~~vl~G~~~~~~~~~v~lnaA~~L~ 493 (534)
T PRK14607 414 IDGYDEISTCGPTQILELEDGEIVTYTFDPEELGLKRVDPEELKGGDPQENYRLAEDVLKGEPRRPQRDAVALNAGAALY 493 (534)
T ss_pred CCCCccccCCCceEEEEEcCCEEEEEEEcHHHCCCCCCCHHHcCCCCHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988889999999999999999999995 6889999999999999
Q ss_pred HcCcCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcC
Q 023655 238 VSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKV 274 (279)
Q Consensus 238 ~~g~~~~~~eg~~~a~~~l~sG~a~~~l~~~~~~~~~ 274 (279)
++|+++|++||+++|+++|+||+|+++|++|++.++.
T Consensus 494 ~~g~~~s~~eg~~~a~~~i~sG~a~~~l~~~~~~~~~ 530 (534)
T PRK14607 494 LVGEADSIKEGVGKALDLIDDGRAYKKLEEVMDLSKT 530 (534)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998753
No 8
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1V8G_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 3H5Q_A 1KHD_A 1KGZ_B 1AZY_A 1OTP_A ....
Probab=100.00 E-value=2.8e-74 Score=515.03 Aligned_cols=250 Identities=52% Similarity=0.817 Sum_probs=237.6
Q ss_pred CcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCCCHHHHHHHHHhcCeEEEeCC
Q 023655 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMST 92 (279)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~~~~~~~~~l~~~g~~fl~~~ 92 (279)
+++|+|||||||.+||||||++|+++|++|+||+|||||++++++||+|+||+|||++++++++++++|++.||+|+++|
T Consensus 2 ~~~D~~gTGGd~~~t~niSt~~a~vlAa~G~~V~kHG~r~~~~~~Gs~dvLe~LGv~~~~~~~~~~~~l~~~g~~fl~~~ 81 (252)
T PF00591_consen 2 PVVDICGTGGDGDKTFNISTAAAIVLAAAGVPVAKHGNRGVTSKSGSADVLEALGVPIDLSPEEAQAQLEETGIAFLFAP 81 (252)
T ss_dssp TEEEEEESSCSSSTBHHHHHHHHHHHHHTTSEEEEEEESGCTTSSSHHHHHHHSTB-TT--HHHHHHHHHHHSEEEEEHH
T ss_pred CceEEecCCCCCCCceehHHHHHHHHHccCCcEecccCCCccccccHHHHHHhcCCCcCCCHHHHHHHhhccCeEEecch
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCceEEEEecCCccccccCCCee
Q 023655 93 KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGL 172 (279)
Q Consensus 93 ~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~lvv~GeG~dE~s~~~~t~ 172 (279)
.|||+|+++.++|++||+||+||+++||+||++++++|+|||||+|.++|+++++.+|+++++||||||+||+++.++|.
T Consensus 82 ~~~p~~~~l~~~R~~lg~rT~~N~l~pL~nP~~~~~~v~Gv~~~~~~~~~~~~~~~lg~~~~~vv~G~G~dE~~~~~~t~ 161 (252)
T PF00591_consen 82 NFHPALKRLAPVRRELGIRTVFNTLGPLLNPANAKHQVIGVFHPEYAELMAEALRDLGYGRALVVKGEGSDEISPLGPTR 161 (252)
T ss_dssp HHSGGHHHHHHHHHHHTS--SHHHHGHHHHTT--SEEEEEHSCHHHHHHHHHHHCCETESEEEEEEETTBSSHHHSSHEE
T ss_pred hcCcchHHHHHHHHHcCCCCHHHhhhhhcCCcCCCcEEEEEeCHHHHHHHHHHHHhCCCceEEEEecCCcchhhhccCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhCCCChhH-HHHHHHHHHHHHHHcCcCCCHHHHHHH
Q 023655 173 ILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAI-ADALILNAAAALLVSCKVNTLAEGVAL 251 (279)
Q Consensus 173 v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~~~~-~~~v~~naa~~L~~~g~~~~~~eg~~~ 251 (279)
++++++|++.++.++|++||++..+.+++..+++++++++++++|+|+..++ +|+|++|||++||++|+++|++||+++
T Consensus 162 v~~~~~g~~~~~~l~p~d~gl~~~~~~~l~~~~~~e~~~~~~~~L~G~~~~~~~d~v~~nAa~~L~~~g~~~s~~eg~~~ 241 (252)
T PF00591_consen 162 VYELKNGEITEYELDPEDFGLKRAPLEELEGGDPEENARILRAVLAGEEDPAHRDAVLLNAAAALYVAGKASSLEEGVEK 241 (252)
T ss_dssp EEEHHTTEEEEEEEEEGCCTSSSEEGGGGBHSSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSSSSHHHHHHH
T ss_pred EEeecCCceeEEecCHhhcCCCCCChHHhcCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999999999999999888889888899999999999999998665 899999999999999999999999999
Q ss_pred HHHHHHccHHH
Q 023655 252 AREIQLSGKAL 262 (279)
Q Consensus 252 a~~~l~sG~a~ 262 (279)
|+++|+||+|+
T Consensus 242 a~e~i~sG~Al 252 (252)
T PF00591_consen 242 AREAIDSGKAL 252 (252)
T ss_dssp HHHHHHHTHHH
T ss_pred HHHHHHcCCCC
Confidence 99999999996
No 9
>PRK08136 glycosyl transferase family protein; Provisional
Probab=100.00 E-value=2.6e-68 Score=487.42 Aligned_cols=244 Identities=19% Similarity=0.230 Sum_probs=228.8
Q ss_pred CccccccccCC--C-CcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCCCHHHH
Q 023655 1 MIKYATKVEGL--G-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGV 77 (279)
Q Consensus 1 ~~~~~~~~~~~--~-~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~~~~~~ 77 (279)
|++++.+++.. . ..+|+||||||++ ||||||++|+++|++|+||+|||||++|+|+||+|+||+|||+++.+++++
T Consensus 66 ~~~~~~~~~~~~~~~~~iD~~gtgGd~~-t~nist~aA~vlA~~G~~V~kHGnr~vssk~gsadvleaLGi~~~~~~~~~ 144 (317)
T PRK08136 66 MQAHTIPLTPPAGRPMPVVIPSYNGARK-QANLTPLLALLLAREGVPVLVHGVSEDPTRVTSAEIFEALGIPPTLHADQA 144 (317)
T ss_pred HHHhCCcCCCCCCCCceEEeCCCCCCCC-CcChHHHHHHHHHHCCCeEEEECCCCCCCcccHHHHHHHcCCCCCCCHHHH
Confidence 46677777442 2 2799999999965 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCeEEEeCCccChhhhchHHHHhhhCCCChhHhhhhccCC--CCCCceEEeeechhhHHHHHHHHHHcCCceEE
Q 023655 78 RRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP--ACVPFAVVGVYNENLVLKMANALQRFGLKRAL 155 (279)
Q Consensus 78 ~~~l~~~g~~fl~~~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP--~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~l 155 (279)
+++|++.||+|+|+|.|||+|+++.++|++||+||+||++|||+|| +++++||+|||||+|.++|+++++++|. +++
T Consensus 145 ~~~l~~~g~~fl~ap~~hPa~~~~~~vR~~LG~RT~fN~lgpL~NP~~a~~~~~v~Gv~~~~~~~~~a~~l~~lg~-~al 223 (317)
T PRK08136 145 QAKLAEGQPAFIPVGVLCPPLARLLALRWRMGVRNSAHTLAKLATPFAEGAALRLSSYTHPEYRDRLAEFFSDIGA-RAL 223 (317)
T ss_pred HHHHHhcCeEEEEhHHhCHHHHHHHHHHHHhCCCCHHHHHHHhcCccccCCCeEEEeeeChHHHHHHHHHHHHcCC-CEE
Confidence 9999999999999999999999999999999999999999999999 6999999999999999999999999998 999
Q ss_pred EEec-CCccccccCCCeeEEEEeCCeEEEEEeCCCCCCCCCCCCCCC-CCCChHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 023655 156 VVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESL-QGGGPAYNAEVLRRVLSGERGAIADALILNAA 233 (279)
Q Consensus 156 vv~G-eG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~-~~~~~~~~a~~~~~vL~G~~~~~~~~v~~naa 233 (279)
|||| ||+||++|+++|+++++++|+++ +.++|+++|++..+ ++ .++++++|+++++++|+|+. +..|+|++|||
T Consensus 224 vv~G~~G~dE~s~~~~t~v~~~~~g~~~-~~~~p~~~g~~~~~--~~~~~~~~~~na~~~~~vL~G~~-~~~d~v~lNaa 299 (317)
T PRK08136 224 LMRGTEGEVYANPRRCPQIDWIHDGGCR-VLVERQSGSADEPP--ELPAAKDAATTAAWIERVLAGEV-PVPESIARQVA 299 (317)
T ss_pred EEEcCCCceeecCCCCceEEEEeCCEEE-EEECHHHcCCccCc--hhccCCCHHHHHHHHHHHHCCCC-CcchHHHHHHH
Confidence 9999 99999999999999999999988 99999999998875 55 78899999999999999974 55699999999
Q ss_pred HHHHHcCcCCCHHHHHH
Q 023655 234 AALLVSCKVNTLAEGVA 250 (279)
Q Consensus 234 ~~L~~~g~~~~~~eg~~ 250 (279)
++||++|+++|++||+.
T Consensus 300 ~~l~~~g~~~~~~~g~~ 316 (317)
T PRK08136 300 CCLVAAGEAATIEDGLA 316 (317)
T ss_pred HHHHHcCccCCHHHhhc
Confidence 99999999999999975
No 10
>KOG1438 consensus Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-67 Score=459.98 Aligned_cols=262 Identities=63% Similarity=1.001 Sum_probs=250.6
Q ss_pred CCcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCC-CCCHHHHHHHHHhcCeEEEe
Q 023655 12 GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVI-DLDPEGVRRCVDEAGIGFMM 90 (279)
Q Consensus 12 ~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~-~~~~~~~~~~l~~~g~~fl~ 90 (279)
++++||+||||||.||||+||.+|+++|.||.+|+||||++-+|.+|++|+|++||+++ +.+++.+.++.++.+|.|++
T Consensus 102 ~~~vDIVGTGGDG~NTfNvST~saIvAag~GlkvcKhGnkaStSasGsaDll~~lGCd~l~v~p~~i~~~~e~~~f~Fl~ 181 (373)
T KOG1438|consen 102 EDAVDIVGTGGDGANTFNVSTGSAIVAAGCGLKVCKHGNKASTSASGSADLLEALGCDVLDVGPEGIKRCVEEGGFGFLM 181 (373)
T ss_pred CceeEEeccCCCCcceeeecchHHHHHhcccchhhhcCCccccccCccHHHHHhcCceeeccCCcccccccccCceeEEe
Confidence 46899999999999999999999999999999999999999999999999999999884 69999999999999999999
Q ss_pred CCccChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCceEEEEec-CCccccccCC
Q 023655 91 STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLG 169 (279)
Q Consensus 91 ~~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~lvv~G-eG~dE~s~~~ 169 (279)
+|.|||+|+.+.++|++||++|+||++|||+||++..++|+||||+++.+.|++++.++|..+-.+|.| .|+||+||.+
T Consensus 182 aPm~Hp~mk~V~piRK~LgipTvFNilGPlLnP~~v~~rivGVy~k~L~~~~AKal~~~g~gs~~~V~g~~GLDE~SP~G 261 (373)
T KOG1438|consen 182 APMYHPAMKIVGPIRKKLGIPTVFNILGPLLNPARVSYRIVGVYHKDLVVKMAKALQRFGMGSRALVVGSCGLDEMSPLG 261 (373)
T ss_pred chhhcccccchhHHHHhcCCccHHHhcccccCcchhhhheeeeeHHHHHHHHHHHHHHhCCCceEEEEeccCccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999986777777 9999999999
Q ss_pred CeeEEEEeCCe--EEEEEeCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhCCCC---hhHHHHHHHHHHHHHHHcCcCCC
Q 023655 170 PGLILDVTQEK--IERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER---GAIADALILNAAAALLVSCKVNT 244 (279)
Q Consensus 170 ~t~v~~~~~g~--i~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~---~~~~~~v~~naa~~L~~~g~~~~ 244 (279)
+|.+|.+++++ +++|.++|.+||++.++++++.++.|.+||-..+++|+|+. +|..|.+++|+|++|.+++++.+
T Consensus 262 ~t~vw~v~~se~k~e~f~~~P~~Fgl~~h~Ls~~asggP~~NAilleevLSg~~hagdPI~Dy~lmNtAall~vs~~~q~ 341 (373)
T KOG1438|consen 262 GTLVWDVTPSEEKIEEFSFDPLDFGLPRHTLSDLASGGPDYNAILLEEVLSGESHAGDPIADYLLMNTAALLLVSNRVQT 341 (373)
T ss_pred CceEEEecCCceeeeeeecCHhhcCCCcCchhhhccCCCCccHHHHHHHhcCcccCCChHHHHHHHHHHHHHHHhhhhhH
Confidence 99999999865 68889999999999999999999999999999999999994 58999999999999999999999
Q ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhc
Q 023655 245 LAEGVALAREIQLSGKALNTLDLWIEVSK 273 (279)
Q Consensus 245 ~~eg~~~a~~~l~sG~a~~~l~~~~~~~~ 273 (279)
|.||+..|+|.|.||+|++.|+.|+...+
T Consensus 342 l~EGv~~A~esisSG~Alr~L~~fi~~~s 370 (373)
T KOG1438|consen 342 LAEGVTVARESISSGKALRTLDSFINISS 370 (373)
T ss_pred HHhhhHHHHHhhcchHHHHHHHHHHhhhh
Confidence 99999999999999999999999997654
No 11
>PRK09071 hypothetical protein; Validated
Probab=100.00 E-value=1.2e-65 Score=471.78 Aligned_cols=247 Identities=19% Similarity=0.192 Sum_probs=227.8
Q ss_pred CccccccccCCCCccee-ecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCc-HHHHHHHcCCCCCCCHHHHH
Q 023655 1 MIKYATKVEGLGDAVDI-VGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACG-SADVLEALGVVIDLDPEGVR 78 (279)
Q Consensus 1 ~~~~~~~~~~~~~~~D~-~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~G-s~dvLe~LGi~~~~~~~~~~ 78 (279)
|++++.+++. +..+|+ ||||+|+..++| +++|+++|++|+||+|||||++||++| |+|+||+|||+++.+++++.
T Consensus 67 ~r~~~~~~~~-~~~iD~~~gtG~d~~~~~~--~~~a~vlA~~G~~V~kHGnr~~ssk~g~saDvLeaLGv~~~~~~~~~~ 143 (323)
T PRK09071 67 IRERLQAPPL-AVDLDWPSYAGKRRHLPWY--LLAAKLLAQNGYRVLLHGGGGHTAGRLYTEQLLEALGIPIARSWQEAE 143 (323)
T ss_pred HHHhcccCCC-CCceecCCcCCCCCCcccH--HHHHHHHHHCCCeEEEECCCCCCCCcccHHHHHHHCCCCCCCCHHHHH
Confidence 4677777653 235998 999999776655 799999999999999999999999986 99999999999999999999
Q ss_pred HHHHhcCeEEEeCCccChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCceEEEEe
Q 023655 79 RCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (279)
Q Consensus 79 ~~l~~~g~~fl~~~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~lvv~ 158 (279)
++|++.||+|+|+|.|||+|++++++|++||+||+||++|||+||+++++||+|||||+|.++|+++++.+|.++++|||
T Consensus 144 ~~l~~~g~~fl~ap~~hPa~~~~~~~R~~lg~RT~fN~lgpL~NPa~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~alvv~ 223 (323)
T PRK09071 144 QALEEHNIAYLPLEDFAPQLQRMIDLRNTLGLRSPINTLARLLNPLNAKASLQGIFHPGYQQLHREAARLLGDQNALVFK 223 (323)
T ss_pred HHHHhcCeEEeehHHhChHHHHHHHHHHHhCCCCHHHHHHHHcCcCCCCceEEeeEChhHHHHHHHHHHHcCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCccccccCCCeeEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhCCCC-hh-HHHHHHHHHHHH
Q 023655 159 S-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GA-IADALILNAAAA 235 (279)
Q Consensus 159 G-eG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~-~~-~~~~v~~naa~~ 235 (279)
| +|+||++|.++|+++++++|++.++.++| ||++..+ .++++|++++++||+|+. ++ ..|+|++|||++
T Consensus 224 G~~G~dE~s~~~~t~v~~~~~g~i~~~~~~~--~g~~~~~------~~~~~na~~~~~vl~G~~~~~~~~d~v~~Naa~a 295 (323)
T PRK09071 224 GEGGESERNPDVSTTLYGSRNGEAWDEEWPA--LSEERHV------KPEELDPEQLLAVWRGEEEDEYGENAVIATMALA 295 (323)
T ss_pred CCCCceeecCCCceEEEEEcCCeEEEEEecc--cccccCC------CCcccCHHHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence 9 99999999999999999999999999954 8876543 278999999999999985 44 458999999999
Q ss_pred HHHcCcCCCHHHHHHHHHHHHHcc
Q 023655 236 LLVSCKVNTLAEGVALAREIQLSG 259 (279)
Q Consensus 236 L~~~g~~~~~~eg~~~a~~~l~sG 259 (279)
|| .|+++|++||+++|+++|+++
T Consensus 296 L~-~g~~~sl~eg~~~A~~~w~~r 318 (323)
T PRK09071 296 LW-RGLNQSREEAFEKAAQLWATR 318 (323)
T ss_pred HH-cCCCCCHHHHHHHHHHHHHHh
Confidence 99 999999999999999999865
No 12
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=100.00 E-value=5.6e-49 Score=370.58 Aligned_cols=237 Identities=22% Similarity=0.299 Sum_probs=214.0
Q ss_pred CccccccccCC---CCcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHc-CCCCCCCHHH
Q 023655 1 MIKYATKVEGL---GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDPEG 76 (279)
Q Consensus 1 ~~~~~~~~~~~---~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~L-Gi~~~~~~~~ 76 (279)
|++.+.+++.. ..++|+|||||||.+|||+ +|+++|++|++|+|||||+++|++||+|+||+| |+++++++++
T Consensus 62 M~~sg~~~~~~~~~~~~vD~~gTGGdG~kt~ni---~a~ivAA~Gv~VaKhgnR~lss~~GTaD~LE~lpG~~~~ls~e~ 138 (434)
T PRK06078 62 MVNSGDTIDLSAIEGIKVDKHSTGGVGDTTTLV---LAPLVAAFGVPVAKMSGRGLGHTGGTIDKLESIKGFHVEISQED 138 (434)
T ss_pred HHHhCCcccCcccCCCeeEecCCCCCCCCchHH---HHHHHHcCCCCeeeeCCCCcCCCcchHHHHHhCCCCCCCCCHHH
Confidence 45666777542 3489999999999999994 899999999999999999999999999999999 9999999999
Q ss_pred HHHHHHhcCeEEEeC-CccChhhhchHHHHhhhCCCChhHhhhhccCC--------CCCCceEEeee--------chhhH
Q 023655 77 VRRCVDEAGIGFMMS-TKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP--------ACVPFAVVGVY--------NENLV 139 (279)
Q Consensus 77 ~~~~l~~~g~~fl~~-~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP--------~~~~~~v~Gv~--------h~~~~ 139 (279)
+.++|++.||+|+++ |.|||++++++++|++++. ||.+ ||+|| +++.++|+||+ +++..
T Consensus 139 ~~~~l~~~G~~fl~~a~~~~PAdk~v~~lR~v~~t---~n~l-PLi~~SImSKKlAag~~~~vldV~~G~gAfm~~~~~a 214 (434)
T PRK06078 139 FIKLVNENKVAVIGQSGNLTPADKKLYALRDVTAT---VNSI-PLIASSIMSKKIAAGADAIVLDVKTGAGAFMKTVEDA 214 (434)
T ss_pred HHHHHHHhCcEEEccCCCcChhhhhhHHHhccccc---cChH-HhhhhHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHH
Confidence 999999999999995 9999999999999999994 9999 99999 89999999999 99999
Q ss_pred HHHHHHHHHcCCceEEEEecCCccccccCCCeeEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhCC
Q 023655 140 LKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSG 219 (279)
Q Consensus 140 ~~~a~~~~~lg~~~~lvv~GeG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G 219 (279)
+.+++++..+|.+ .+.+.++.++++ |+++|+. .+++.++.+. +++|+|
T Consensus 215 ~~lA~~l~~lG~~---------------~g~~~~a~lt~~--------~~plG~~--------iGna~Ev~Ea-~~vL~G 262 (434)
T PRK06078 215 EELAHAMVRIGNN---------------VGRNTMAVISDM--------SQPLGRA--------IGNALEVLEA-IDTLQG 262 (434)
T ss_pred HHHHHHHHHHHHh---------------cCCeEEEEECCC--------Ccccccc--------CCCHHHHHHH-HHHHCC
Confidence 9999999999964 345666777664 7788762 4577777776 999999
Q ss_pred CC-hhHHHHHHHHHHHHHHHcCcCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcCCC
Q 023655 220 ER-GAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKVNK 276 (279)
Q Consensus 220 ~~-~~~~~~v~~naa~~L~~~g~~~~~~eg~~~a~~~l~sG~a~~~l~~~~~~~~~~~ 276 (279)
+. .+++|.++.||+.+|++.|.+++++||+++|++.|+||+|+++|++|+++|++|.
T Consensus 263 ~~~~~~~d~v~~~A~~~L~~~g~~~~~~eg~~~a~e~l~sGkAl~kf~~~v~aqGg~~ 320 (434)
T PRK06078 263 KGPKDLTELVLTLGSQMVVLAGKAKTLEEAREHLIEVMNNGKALEKFKEFLSAQGGDA 320 (434)
T ss_pred CCcccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccHHHHHHHHHHHHhCCCc
Confidence 85 4799999999999999999999999999999999999999999999999999964
No 13
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=100.00 E-value=1.5e-43 Score=331.60 Aligned_cols=235 Identities=25% Similarity=0.302 Sum_probs=202.3
Q ss_pred CccccccccCC---CCcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcC-CCCCCCHHH
Q 023655 1 MIKYATKVEGL---GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALG-VVIDLDPEG 76 (279)
Q Consensus 1 ~~~~~~~~~~~---~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LG-i~~~~~~~~ 76 (279)
|++.+.+++.. .+++|+|||||||.+ +||++|+++|++|+||+|||||++++++||+|+||+|| +++++++++
T Consensus 60 m~~~~~~l~~~~~~~~~vD~~gTGGdG~~---iSt~~a~ivAa~Gv~VaKhgnR~lss~~GTaD~LE~lgG~~v~ls~e~ 136 (405)
T TIGR02644 60 MIDSGEVLDLSSLPGPKVDKHSTGGVGDK---VSLVLGPIVAACGVKVAKMSGRGLGHTGGTIDKLESIPGFRTELSEAE 136 (405)
T ss_pred HHHhCCcCCCcccCCCeeEEeCCCCCCCC---chHHHHHHHHhCCCCEEeeCCCCCCCcchHHHHHHhcCCCCCCCCHHH
Confidence 45666666432 348999999999995 89999999999999999999999999999999999997 999999999
Q ss_pred HHHHHHhcCeEEEeCC-ccChhhhchHHHHhhhCCCChhHhhhhccCCCC--------CCceEEee--------echhhH
Q 023655 77 VRRCVDEAGIGFMMST-KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPAC--------VPFAVVGV--------YNENLV 139 (279)
Q Consensus 77 ~~~~l~~~g~~fl~~~-~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~--------~~~~v~Gv--------~h~~~~ 139 (279)
+.+++++.||||++++ .++|++++++++|++++ |++|+ ||+||.- +.++|++| ++.+..
T Consensus 137 ~~~~l~~~G~~fl~~~~~l~PAdk~l~~lRd~~~--Tv~si--pLi~aSimSKK~A~G~~~~vlDVk~G~gAfm~~~e~a 212 (405)
T TIGR02644 137 FIEIVNKVGLAIIGQTKDLAPADKKLYALRDVTG--TVDSI--PLIASSIMSKKLAAGADAIVLDVKVGSGAFMKTLEDA 212 (405)
T ss_pred HHHHHHHcCeEEecCccccCcchhHHHHHhhccc--ccCcH--HHHHHHHHHHHHhcCCCeEEEeecccCCCCcCCHHHH
Confidence 9999999999999998 99999999999999999 89999 9999965 89999999 999999
Q ss_pred HHHHHHHHHcCCceEE--EEecCCccccccCCCeeEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCChHHHHHHHHHHh
Q 023655 140 LKMANALQRFGLKRAL--VVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVL 217 (279)
Q Consensus 140 ~~~a~~~~~lg~~~~l--vv~GeG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL 217 (279)
..+++.+..+|.+..+ +....++||+ +|... +++.+ ++...++|
T Consensus 213 ~~LA~~~~~~g~~~g~~~~a~~t~md~p-------------------------lG~~i--------GnalE-v~Eai~~L 258 (405)
T TIGR02644 213 KELAKLMVEIGKGAGRKTSALLTDMNQP-------------------------LGRAI--------GNALE-VKEAVEFL 258 (405)
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCCCcc-------------------------ccCCC--------CChhh-HHHHHHHH
Confidence 9999999888754333 2222344443 33221 12222 44458999
Q ss_pred CCCC-hhHHHHHHHHHHHHHHHcCcCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcCCC
Q 023655 218 SGER-GAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKVNK 276 (279)
Q Consensus 218 ~G~~-~~~~~~v~~naa~~L~~~g~~~~~~eg~~~a~~~l~sG~a~~~l~~~~~~~~~~~ 276 (279)
+|+. .++.|.++.||+.+|+..|.+.+.+||+++|++.|+||+|+++|++|+++|++|.
T Consensus 259 ~g~~p~dl~e~~~~la~~~L~~~g~a~~~~~g~~~a~~~l~sG~Al~kf~~~v~aQGG~~ 318 (405)
T TIGR02644 259 KGEGPADLKELTLALAAEMLLLAGIAKTEKEARALAEDVLESGKALEKFRRFVEAQGGDP 318 (405)
T ss_pred CCCCcHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHhCCCh
Confidence 9985 6799999999999999999999999999999999999999999999999999965
No 14
>PRK04350 thymidine phosphorylase; Provisional
Probab=100.00 E-value=3.8e-42 Score=327.31 Aligned_cols=236 Identities=26% Similarity=0.337 Sum_probs=205.1
Q ss_pred CccccccccCC-CCcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCCCHHHHHH
Q 023655 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (279)
Q Consensus 1 ~~~~~~~~~~~-~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~~~~~~~~ 79 (279)
|++.+.+++.. .+++|+|||||||.+++ |+.+++++|++|++|+|||||++||++||+|+||+|| +++++++++.+
T Consensus 140 M~~~g~~l~~~~~~~vDkhgTGGd~g~t~--S~~~apivAA~Gv~VaKhgnRaiss~sGTaD~LEaLg-~v~ls~e~~~~ 216 (490)
T PRK04350 140 MVETGERLDWDRPPVVDKHSIGGVPGNRT--TLIVVPIVAAAGLTIPKTSSRAITSPAGTADTMEVLA-PVDLSVEEIKR 216 (490)
T ss_pred HHHhCCcccCCCCCeEEecCCCCCCCCCE--eHHHHHHHHhCCCceeeecCCCCCCCCchHHHHHHhh-cCCCCHHHHHH
Confidence 56667777543 46899999999988875 6668889999999999999999999999999999999 99999999999
Q ss_pred HHHhcCeEEEe--CCccChhhhchHHHHhhhCCCChhHhhhhccC--------------CCCCCceEEeeechhhHHHHH
Q 023655 80 CVDEAGIGFMM--STKYHPAMKFVRPVRKKLKVKTVFNILGPMLN--------------PACVPFAVVGVYNENLVLKMA 143 (279)
Q Consensus 80 ~l~~~g~~fl~--~~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlN--------------P~~~~~~v~Gv~h~~~~~~~a 143 (279)
++++.||||+| ++.|||++++++++|+.++++|++|++++++| |+++..+ +++.+..+.++
T Consensus 217 ~l~~~G~~flfG~a~~l~PAdk~l~~vR~~l~vds~~li~aSImSKKlA~G~~~lvlDVp~G~ga~---v~~~~~A~~LA 293 (490)
T PRK04350 217 VVEKVGGCLVWGGAVNLSPADDILIRVERPLSIDPRGQLVASILSKKIAAGSTHVVIDIPVGPTAK---VRSVEEARRLA 293 (490)
T ss_pred HHHHcCEEEEECCccccCHHHHHHHHHhhhcCCCcHHHHHHHHhhhHhhcCCCceEEecccCCCCc---CCCHHHHHHHH
Confidence 99999999999 89999999999999999999999999999999 9998888 89999999999
Q ss_pred HHHHHcCCceEEEEecCCccccccCCCeeEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhCCC---
Q 023655 144 NALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE--- 220 (279)
Q Consensus 144 ~~~~~lg~~~~lvv~GeG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~--- 220 (279)
+.+..+|.+..+.+. +.++++. .|-.+| ..+..+++...++|+|+
T Consensus 294 ~~~~~vg~~~g~~v~---------------a~lTd~~------qPlG~~-----------iGnalEv~e~l~vL~g~~~g 341 (490)
T PRK04350 294 RLFEEVGDRLGLRVE---------------CAITDGS------QPIGRG-----------IGPALEARDVLAVLENDPDA 341 (490)
T ss_pred HHHHHHHHhcCCeEE---------------EEECCCC------eehhcc-----------CCchHHHHHHHHHhCCCCCC
Confidence 999998865444431 2233332 122222 23577899999999994
Q ss_pred ChhHHHHHHHHHHHHHHHcCcCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcCC
Q 023655 221 RGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKVN 275 (279)
Q Consensus 221 ~~~~~~~v~~naa~~L~~~g~~~~~~eg~~~a~~~l~sG~a~~~l~~~~~~~~~~ 275 (279)
..++.+.++.+|+.+|+..|.+ +.++|+++|++.|+||+|++||++|+++|++|
T Consensus 342 p~dl~e~~l~lA~~~L~~~g~~-~~~~g~~~a~~~L~sG~Al~kf~~ii~aQGG~ 395 (490)
T PRK04350 342 PNDLREKSLRLAGILLEMGGVA-PGGEGYALAREILESGKALEKFQEIIEAQGGD 395 (490)
T ss_pred CHhHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCcHHHHHHHHHHHHcCCC
Confidence 2578899999999999999976 99999999999999999999999999999986
No 15
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=100.00 E-value=1.2e-36 Score=287.56 Aligned_cols=242 Identities=24% Similarity=0.304 Sum_probs=181.5
Q ss_pred CccccccccC-----CCCcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHc-CCCCCCCH
Q 023655 1 MIKYATKVEG-----LGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDP 74 (279)
Q Consensus 1 ~~~~~~~~~~-----~~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~L-Gi~~~~~~ 74 (279)
|++.+.+++. ..+++|+|||||||+ |+||++|+++|++|++|+|||||++++++||+|+||+| |+++++++
T Consensus 63 m~~sg~~i~~~~~d~~~~~vDkhgTGGdG~---niS~~~a~ivAa~Gv~VaKhg~R~lss~~GTaD~LE~LpG~~v~ls~ 139 (440)
T PRK05820 63 MRDSGEVLDWSSLNLNGPIVDKHSTGGVGD---KISLMLAPMVAACGGYVPMISGRGLGHTGGTLDKLEAIPGYRAFPSN 139 (440)
T ss_pred HHHhCCcCCCccccCCCCeEEEcCCCCCCc---cHHHHHHHHHHhCCCCEEeeCCCCCCCcccHHHHHHhCCCCCCCCCH
Confidence 3455555532 235799999999998 78999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHhcCeEEEeCC-ccChhhhchHHHHhhhCC-CChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCc
Q 023655 75 EGVRRCVDEAGIGFMMST-KYHPAMKFVRPVRKKLKV-KTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLK 152 (279)
Q Consensus 75 ~~~~~~l~~~g~~fl~~~-~~~Pal~~l~~lR~~lg~-Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~ 152 (279)
+++.+++++.||+|++++ .|||++++++++|++++. .++ ||+-. +|.++++. .|.
T Consensus 140 e~~~~~l~~~G~~~~~~~~~l~PAdk~l~~lRdvt~tvds~-----pli~a--------SImSKK~A---------~G~- 196 (440)
T PRK05820 140 DRFREILKDVGVAIIGQTSDLAPADKRLYALRDVTATVESI-----PLITA--------SILSKKLA---------EGL- 196 (440)
T ss_pred HHHHHHHHHcCeEEEcCchhcChHHHHHHHHhcccCCCChH-----HHHHH--------HHHHHHHH---------cCC-
Confidence 999999999999999998 999999999999998874 333 33333 45555543 476
Q ss_pred eEEEEe---cCC-----ccccccCCCeeEEEE--eCCeEEEEEeCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhCCC-C
Q 023655 153 RALVVH---SEG-----LDEMSPLGPGLILDV--TQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE-R 221 (279)
Q Consensus 153 ~~lvv~---GeG-----~dE~s~~~~t~v~~~--~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~-~ 221 (279)
.++|+. |.| .||..-.+.+.+ .+ .-|.-+...++--+. |+.. .......+....++|+|+ .
T Consensus 197 ~~lvlDVk~G~gAfmkt~~~A~~La~~mv-~ig~~~g~~~~a~lTdm~q-----PlG~--~iGnalEv~Eai~~L~g~~g 268 (440)
T PRK05820 197 DALVLDVKVGSGAFMKTYEEARELARSMV-EVANGAGVRTTALLTDMNQ-----PLAS--SAGNALEVREAVEFLTGGYR 268 (440)
T ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHHHH-HHHHHcCCeEEEEEccCCC-----cccC--ccchHHHHHHHHHHHCCCCC
Confidence 566655 554 333322222111 11 011112222221111 0111 112344556678999998 3
Q ss_pred -hhHHHHHHHHHHHHHHHcCcCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcCCC
Q 023655 222 -GAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKVNK 276 (279)
Q Consensus 222 -~~~~~~v~~naa~~L~~~g~~~~~~eg~~~a~~~l~sG~a~~~l~~~~~~~~~~~ 276 (279)
.++.+.++.-++.+|+..|.+.+.++|.+++++.|+||+|++||++|+++|++|.
T Consensus 269 p~dl~e~~~~la~~ml~~~g~~~~~~~g~~~~~~~l~sG~Al~kF~~~v~aQGGd~ 324 (440)
T PRK05820 269 PPRLVEVTMALAAEMLVLAGLAKDEAEARADLAAVLDSGKAAERFGRMVAAQGGPP 324 (440)
T ss_pred ChhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCh
Confidence 5688888888999999999999999999999999999999999999999999965
No 16
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=100.00 E-value=5.4e-36 Score=281.79 Aligned_cols=242 Identities=26% Similarity=0.325 Sum_probs=182.6
Q ss_pred CccccccccCC-----CCcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHc-CCCCCCCH
Q 023655 1 MIKYATKVEGL-----GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDP 74 (279)
Q Consensus 1 ~~~~~~~~~~~-----~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~L-Gi~~~~~~ 74 (279)
|++.+.+++.. ..++|+|||||||. |+||++|+++|++|++|+|||||+++|++||+|+||+| |+++++++
T Consensus 62 M~~sg~~i~~~~~~~~~~~vDkhgTGGdG~---niSt~~apivAA~Gv~VaKhgnR~iss~~GTaD~LEalpG~~v~ls~ 138 (437)
T TIGR02643 62 MRDSGDVLDWRSLDLNGPVVDKHSTGGVGD---VVSLMLGPIVAACGGYVPMISGRGLGHTGGTLDKLEAIPGYDIFPDP 138 (437)
T ss_pred HHHhCCcccCcccccCCCeeEecCCCCCCc---chhHHHHHHHHhCCCCeeeecCCCcCCCCchHHHHHhCCCCCCCCCH
Confidence 45566666432 35899999999999 78999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHhcCeEEEe-CCccChhhhchHHHHhhhCC-CChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCc
Q 023655 75 EGVRRCVDEAGIGFMM-STKYHPAMKFVRPVRKKLKV-KTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLK 152 (279)
Q Consensus 75 ~~~~~~l~~~g~~fl~-~~~~~Pal~~l~~lR~~lg~-Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~ 152 (279)
+++.+++++.||+|+. ++.++|++++++++|+..+. .++ ||+-. +|.++++. .|.
T Consensus 139 e~~~~~l~~~g~~f~gqa~~l~PADk~ly~lRDvt~tVds~-----pLi~a--------SImSKKlA---------~g~- 195 (437)
T TIGR02643 139 ALFRRVVKDVGVAIIGQTADLAPADKRFYATRDVTATVESI-----PLITA--------SILSKKLA---------AGL- 195 (437)
T ss_pred HHHHHHHHHcCceEEccCCCcCcchhceeeeeeecCCCCcH-----HHHHH--------HHHHHHHH---------cCC-
Confidence 9999999999999998 69999999999999977652 333 44444 66666664 376
Q ss_pred eEEEEe---cCC-----ccccccCCCeeEEEE--eCCeEEEEEeCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhCCC-C
Q 023655 153 RALVVH---SEG-----LDEMSPLGPGLILDV--TQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE-R 221 (279)
Q Consensus 153 ~~lvv~---GeG-----~dE~s~~~~t~v~~~--~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~-~ 221 (279)
..+|+. |.| .+|..-.+.+.+ .+ .-|.-+...++--+- |+.. .......+....++|+|+ .
T Consensus 196 d~ivlDVk~G~gAfmk~~~~A~~LA~~mv-~ig~~~g~~~~a~iTdm~q-----PlG~--~iGnalEv~Eai~~L~g~~g 267 (437)
T TIGR02643 196 DALVMDVKVGNGAFMPTYEESEELARSLV-DVANGAGVRTTALITDMNQ-----PLAS--AAGNAVEVRNAVDFLTGEKR 267 (437)
T ss_pred CeEEEEcCcCCCCcCCCHHHHHHHHHHHH-HHHHHcCCeEEEEECCCCC-----cccc--ccCcHHHHHHHHHHHCCCCC
Confidence 566665 555 222211111100 00 012222222221111 0111 112344556678999998 3
Q ss_pred -hhHHHHHHHHHHHHHHHcCcCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcCCC
Q 023655 222 -GAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKVNK 276 (279)
Q Consensus 222 -~~~~~~v~~naa~~L~~~g~~~~~~eg~~~a~~~l~sG~a~~~l~~~~~~~~~~~ 276 (279)
.++.+.++.-++.+|...|.+.+.++|.+++++.|+||+|++||++|+++|++|.
T Consensus 268 p~dl~e~~~~la~~ml~~~g~~~~~~~~~~~~~~~l~sG~Al~kF~~~v~aQGGd~ 323 (437)
T TIGR02643 268 NPRLEDVTMALAAEMLVSGGLAADEAEARAKLQAVLDSGRAAERFARMVAALGGPA 323 (437)
T ss_pred CccHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHcCCCc
Confidence 5788999999999999999999999999999999999999999999999999965
No 17
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=100.00 E-value=5.5e-35 Score=278.18 Aligned_cols=241 Identities=23% Similarity=0.284 Sum_probs=182.5
Q ss_pred CccccccccCC-CCcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCCCHHHHHH
Q 023655 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (279)
Q Consensus 1 ~~~~~~~~~~~-~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~~~~~~~~ 79 (279)
|++.+.+++.. .+++|+||||||+.+++|++ +++++|++|++|+|||||++||++||+|+||+|| +++++++++.+
T Consensus 145 M~~sg~~l~~~~~~~vDkhgTGGd~gnk~ni~--~apIvAA~Gv~VaKhsnRaits~sGTAD~LE~Lg-~v~ls~e~~~~ 221 (493)
T TIGR02645 145 MADTGEMLEWDREPIMDKHSIGGVPGNKTSLI--VVPIVAAAGLLIPKTSSRAITSAAGTADTMEVLT-RVALSAEEIKR 221 (493)
T ss_pred HHHhCCCccCCCCCeEEEeCCCCCCCCCEeHH--HHHHHHhCCCCeeeeCCCCcCCCccHHHHHHHhc-CCCCCHHHHHH
Confidence 45666666543 35899999999999988774 7788899999999999999999999999999999 99999999999
Q ss_pred HHHhcCeEEEe--CCccChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCceEEEE
Q 023655 80 CVDEAGIGFMM--STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVV 157 (279)
Q Consensus 80 ~l~~~g~~fl~--~~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~lvv 157 (279)
++++.|+||+| ++.|||++++++++|+.+++.|+ ||+-. +|.+|++. .|. ..+|+
T Consensus 222 ~ve~~G~~fl~G~a~~l~PAdk~i~~vR~~l~vds~-----~li~a--------SImSKKlA---------~G~-~~lvl 278 (493)
T TIGR02645 222 IVEKVGGCLVWGGALNLAPADDVLIRVERPLSIDPR-----AQMLA--------SIMSKKIA---------AGS-THVLI 278 (493)
T ss_pred HHHHCCEEEEECCCcccCHHHHHHHHHHhhcCCCcH-----HHHHH--------HHHHHHHh---------cCC-CeEEE
Confidence 99999999999 89999999999999999999998 44433 56666654 366 45555
Q ss_pred e---cCC-----ccccccCCCeeEEEE--eCCeEEEEEeCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhCCC--C-hhH
Q 023655 158 H---SEG-----LDEMSPLGPGLILDV--TQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE--R-GAI 224 (279)
Q Consensus 158 ~---GeG-----~dE~s~~~~t~v~~~--~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~--~-~~~ 224 (279)
. |.| .+|..-.+...+ .+ .-|.-.+..++--+. |+. +...+...++...++|+|+ . .++
T Consensus 279 Dvk~G~gAf~~~~~~A~~La~~~~-~vg~~~G~~~~a~iTdm~q-----PlG--~~iGnalEv~Eal~~L~g~~~~p~dL 350 (493)
T TIGR02645 279 DIPVGPGAKVRSLQEAERLARLFI-ELGDRLGVRVECAITYGSQ-----PIG--RGIGPALEAKEALAVLERSPAAPFSL 350 (493)
T ss_pred eccccCCCcCCCHHHHHHHHHHHH-HHHHHcCCeEEEEECCCCC-----ccc--cccCcHHHHHHHHHHHCCCCCCCccH
Confidence 4 444 222211111100 00 011112222221110 011 1224566677789999997 2 578
Q ss_pred HHHHHHHHHHHHHHcCcCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcCCC
Q 023655 225 ADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKVNK 276 (279)
Q Consensus 225 ~~~v~~naa~~L~~~g~~~~~~eg~~~a~~~l~sG~a~~~l~~~~~~~~~~~ 276 (279)
.+.++.-|+.+|...|.+. ..+|+++|++.|+||+|++||++|+++|++|.
T Consensus 351 ~e~~~~la~~~L~~~g~~~-~~~g~~~a~~~l~sG~Al~kf~~ii~aQGG~~ 401 (493)
T TIGR02645 351 REKSLLLAGILLEMGGAAP-RGAGKELARELLDSGKALEKMKEIIEAQGGDP 401 (493)
T ss_pred HHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHhCcHHHHHHHHHHHHcCCCC
Confidence 8989999999999999987 79999999999999999999999999999974
No 18
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=100.00 E-value=1.1e-33 Score=269.23 Aligned_cols=241 Identities=23% Similarity=0.282 Sum_probs=181.3
Q ss_pred CccccccccCC-CCcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCCCHHHHHH
Q 023655 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (279)
Q Consensus 1 ~~~~~~~~~~~-~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~~~~~~~~ 79 (279)
|++.+.+++.. .+++|+|||||||.+++|++ +++++|++|++|+|||||+++|++||+|+||+|+ +++++++++.+
T Consensus 146 M~~sg~~l~~~~~~vvDkhgTGGd~gnk~nl~--~apIVAA~Gv~VaKhsnRaits~sGTaD~LEsL~-~v~ls~e~~~~ 222 (500)
T TIGR03327 146 MAETGDMLSFDRHPIMDKHSIGGVPGNKISLL--VVPIVAAAGLTIPKTSSRAITSAAGTADVMEVLA-PVEFSADEIKR 222 (500)
T ss_pred HHHhCCcccCCCCCeEEEeCCCCCCCCCEEHH--HHHHHHhCCCCeeeeCCCCcCCCccHHHHHHHhh-CCCCCHHHHHH
Confidence 45566666543 45899999999999988884 6888899999999999999999999999999995 99999999999
Q ss_pred HHHhcCeEEEe--CCccChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCceEEEE
Q 023655 80 CVDEAGIGFMM--STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVV 157 (279)
Q Consensus 80 ~l~~~g~~fl~--~~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~lvv 157 (279)
++++.|+||+| ++.|||++++++.+|+.+.+.|+ ||+-- +|.+|++. .|. ..+|+
T Consensus 223 ~v~~~G~~fl~Gqa~~l~PAdk~l~alrdt~tvds~-----~li~a--------SImSKKlA---------~G~-d~lvl 279 (500)
T TIGR03327 223 IVEKTGGCLVWGGATNLAPADDKIIKVERPLSIDPR-----GQMLA--------SVMAKKGA---------IGA-DHVVI 279 (500)
T ss_pred HHHHCCEEEEECCccccCHHHHHHHHhccccCCCcH-----HHHHH--------HHHHHHHH---------cCC-CeEEE
Confidence 99999999999 89999999999999998887777 44443 56666664 376 45666
Q ss_pred e---cCC-----ccccccCCCeeEEEE--eCCeEEEEEeCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhCC-CC-hhHH
Q 023655 158 H---SEG-----LDEMSPLGPGLILDV--TQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSG-ER-GAIA 225 (279)
Q Consensus 158 ~---GeG-----~dE~s~~~~t~v~~~--~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G-~~-~~~~ 225 (279)
. |.| .+|..-.+.+.+ .+ .-|......++--+- |+.. ...+...++...++|+| +. .++.
T Consensus 280 DVk~G~gAfm~~~~~A~~LA~~mv-~vg~~~G~~~~a~iTdm~q-----PlG~--~iGnaLEv~Eal~~L~g~~~p~dL~ 351 (500)
T TIGR03327 280 DIPVGKGAKVKTVEEGRKLARDFI-ELGDRLGMNVECAITYGGQ-----PIGR--AIGPALEAKEALKVLEDGEGPNSLI 351 (500)
T ss_pred EcCcCCCCcCCCHHHHHHHHHHHH-HHHHHcCCeEEEEECCCCC-----cccc--ccCcHHHHHHHHHHhcCCCCCccHH
Confidence 5 444 222211111100 00 012222222221111 0111 12345567778899999 43 5799
Q ss_pred HHHHHHHHHHHHHcCcCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcCCC
Q 023655 226 DALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKVNK 276 (279)
Q Consensus 226 ~~v~~naa~~L~~~g~~~~~~eg~~~a~~~l~sG~a~~~l~~~~~~~~~~~ 276 (279)
+.++.-|+.+|...|.+. ..+|++++++.|+||+|++||++|+++|++|.
T Consensus 352 e~~~~la~~~L~~~g~~~-~~~g~~~a~~~l~sG~Al~kf~~ii~aQGGd~ 401 (500)
T TIGR03327 352 EKSLSLAGILLEMGGVAP-RGEGKNLALEILESGKALEKFKEIIAAQGGDP 401 (500)
T ss_pred HHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHhCcHHHHHHHHHHHHcCCCc
Confidence 999999999999999987 79999999999999999999999999999975
No 19
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=99.92 E-value=3.3e-24 Score=198.26 Aligned_cols=231 Identities=24% Similarity=0.333 Sum_probs=177.3
Q ss_pred CCcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHc-CCCCCCCHHHHHHHHHhcCeEEEe
Q 023655 12 GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDPEGVRRCVDEAGIGFMM 90 (279)
Q Consensus 12 ~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~L-Gi~~~~~~~~~~~~l~~~g~~fl~ 90 (279)
...+|+|+|||.|.++ |+++++++|++|++|.|..+|++++..|+.|.||++ |++++.+.++..+++.+.|++.+.
T Consensus 77 ~~~vDKHStGGVgdk~---sL~l~PiVAA~Gl~VpK~SgRgLghtGGT~DklEsi~g~~~~~~e~~fi~~~~~~g~aiiG 153 (435)
T COG0213 77 GPVVDKHSTGGVGDKT---SLILVPIVAAAGLPVPKMSGRGLGHTGGTLDKLESIPGVNLELDEIKFIEQVKDNGVAIIG 153 (435)
T ss_pred CceecccCCCCCCccc---chhHHHHHHhcCCcccccccCccccCccchhhhhccCCcccCcCHHHHHHHhhcCCeEEEe
Confidence 4689999999999774 999999999999999999999999999999999999 999999999999999999999999
Q ss_pred C-CccChhhhchHHHHhhhC-CCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCceEEEEe---cCC----
Q 023655 91 S-TKYHPAMKFVRPVRKKLK-VKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH---SEG---- 161 (279)
Q Consensus 91 ~-~~~~Pal~~l~~lR~~lg-~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~lvv~---GeG---- 161 (279)
+ .++.|+.++++.+|+.++ +.++ ||+-- +|.++++. .|. +++|+. |.|
T Consensus 154 qs~~LaPADkklyalrdvtaTVdsi-----pLias--------SIMSKKlA---------~G~-~~ivlDVkvG~GAfmk 210 (435)
T COG0213 154 QSGNLAPADKKLYALRDVTATVDSI-----PLIAS--------SIMSKKLA---------AGA-DAIVLDVKVGSGAFMK 210 (435)
T ss_pred CcCCcCcccceeEEeeeccccCCcH-----HHHHH--------HHHHHHHh---------ccC-CcEEEEecccCCCccC
Confidence 9 599999999999999999 6666 54444 55555553 365 566665 555
Q ss_pred -ccccccCCCeeEEEEeC--CeEEEEEeCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHH
Q 023655 162 -LDEMSPLGPGLILDVTQ--EKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIADALILNAAAALL 237 (279)
Q Consensus 162 -~dE~s~~~~t~v~~~~~--g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~-~~~~~~v~~naa~~L~ 237 (279)
.++..-.+... .++.+ |..+...++- .+-| +. +...+...++...++|+|+. .++.|.++.-++.+|.
T Consensus 211 t~~~a~~LA~~m-v~ig~~~g~~t~a~iTd--m~QP---LG--~aiGnalEv~Eal~~L~g~~p~dL~e~~l~la~~mL~ 282 (435)
T COG0213 211 TVEDARELAKAM-VEIGKGLGRKTTAVITD--MNQP---LG--RAIGNALEVREALETLKGKGPPDLVELSLALAGEMLE 282 (435)
T ss_pred CHHHHHHHHHHH-HHHHHhcCCeEEEEEcC--CCCc---hh--hhhccHHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence 22221111110 11111 1222222221 1100 11 11133445566778999975 5788999999999999
Q ss_pred HcCcCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcCCC
Q 023655 238 VSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKVNK 276 (279)
Q Consensus 238 ~~g~~~~~~eg~~~a~~~l~sG~a~~~l~~~~~~~~~~~ 276 (279)
..|.+++.+||++++++.|+||+|++||.+|++.|++|.
T Consensus 283 ~~g~a~~~~~a~~~~~~vl~sGkA~ekF~~~v~aQGGd~ 321 (435)
T COG0213 283 MTGLAKTGEEAKAKAREVLESGKALEKFKEIVAAQGGDP 321 (435)
T ss_pred HcCccCccHHHHHHHHHHHhCchHHHHHHHHHHHhCCCh
Confidence 999999999999999999999999999999999999985
No 20
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=75.84 E-value=2.4 Score=32.27 Aligned_cols=58 Identities=24% Similarity=0.178 Sum_probs=42.3
Q ss_pred cceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCC
Q 023655 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID 71 (279)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~ 71 (279)
++|+-||=++|...++=+.-+---|...|.++....|.+..++....+.|+.+|++++
T Consensus 2 l~D~dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~ 59 (101)
T PF13344_consen 2 LFDLDGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVD 59 (101)
T ss_dssp EEESTTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--
T ss_pred EEeCccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCC
Confidence 4688888888887666555566667778999999999887777778888899998864
No 21
>PRK10444 UMP phosphatase; Provisional
Probab=70.90 E-value=11 Score=33.44 Aligned_cols=71 Identities=13% Similarity=-0.009 Sum_probs=52.9
Q ss_pred cceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCCC-----HHHHHHHHHhc
Q 023655 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLD-----PEGVRRCVDEA 84 (279)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~~-----~~~~~~~l~~~ 84 (279)
++|+-||=++|...++-+.-+---|.+.|.+++.-.|++..+.....+.|+.+|+++..+ ..-+.+.|.+.
T Consensus 5 ~~DlDGtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~~i~ts~~~~~~~L~~~ 80 (248)
T PRK10444 5 ICDIDGVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQ 80 (248)
T ss_pred EEeCCCceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHhhEecHHHHHHHHHHhC
Confidence 478888877777655544444456788999999999998777777889999999976532 45666777774
No 22
>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=69.37 E-value=10 Score=34.00 Aligned_cols=118 Identities=25% Similarity=0.285 Sum_probs=67.2
Q ss_pred ecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcC-----c-HHHHHHHc---------CCCCCCCHHHHHHHHH
Q 023655 18 VGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSAC-----G-SADVLEAL---------GVVIDLDPEGVRRCVD 82 (279)
Q Consensus 18 ~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~-----G-s~dvLe~L---------Gi~~~~~~~~~~~~l~ 82 (279)
+-.|..|..| --+..++.+.+|++|+-.|+-+--.+. - |+|+.|-- |+..-++....-+.||
T Consensus 102 vA~~~~gaTT---VAaTMi~A~~aGI~vfaTGGiGGVHrGAe~t~DISaDL~ELa~T~v~vV~AGaKsILDi~~TlE~LE 178 (310)
T COG2313 102 VAEGKNGATT---VAATMILAALAGIKVFATGGIGGVHRGAEHTFDISADLTELARTNVTVVCAGAKSILDIGLTLEVLE 178 (310)
T ss_pred HhcCcCCcch---HHHHHHHHHHcCceEEEecCcccccCCcccccccchhHHHHhcCCeEEEecCchhhhccHHHHHHHH
Confidence 4456777654 122345556679999999986632222 1 67766642 4444466677777888
Q ss_pred hcCeEEEeC-C------------------ccChh-hhchHHHHhhhCCC-ChhHhhhhccCCCCCCceEEeeechhhHHH
Q 023655 83 EAGIGFMMS-T------------------KYHPA-MKFVRPVRKKLKVK-TVFNILGPMLNPACVPFAVVGVYNENLVLK 141 (279)
Q Consensus 83 ~~g~~fl~~-~------------------~~~Pa-l~~l~~lR~~lg~R-t~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~ 141 (279)
..|+-.+.. . ...|+ ..+++..|++||+- .. -..||..-.+. +.+.++...
T Consensus 179 T~gVPvvg~~t~~fPaF~sR~Sg~~~pl~l~~pe~ia~~~~t~~~lglegg~-----lVaNPvPee~e---ip~eeie~~ 250 (310)
T COG2313 179 TQGVPVVGYQTNEFPAFFSRESGFRVPLRLESPEEIARILATKWQLGLEGGL-----LVANPVPEEFE---IPEEEIEAL 250 (310)
T ss_pred hcCcceeecCCCcccchhcccCCCcCccccCCHHHHHHHHHHHHHhCCCCce-----EEecCCchhcc---CCHHHHHHH
Confidence 888755432 2 22333 34566677788773 22 45788765553 344444444
Q ss_pred HHHHH
Q 023655 142 MANAL 146 (279)
Q Consensus 142 ~a~~~ 146 (279)
+.+++
T Consensus 251 I~~a~ 255 (310)
T COG2313 251 IERAL 255 (310)
T ss_pred HHHHH
Confidence 44443
No 23
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=68.01 E-value=5 Score=31.66 Aligned_cols=90 Identities=18% Similarity=0.218 Sum_probs=60.6
Q ss_pred cCCCCCCCHHHHHHHHHhcCeEEEeCCcc--ChhhhchHHHHhhhC--CCChhHhhhhccCCCCCCceEEeeechhhHHH
Q 023655 66 LGVVIDLDPEGVRRCVDEAGIGFMMSTKY--HPAMKFVRPVRKKLK--VKTVFNILGPMLNPACVPFAVVGVYNENLVLK 141 (279)
Q Consensus 66 LGi~~~~~~~~~~~~l~~~g~~fl~~~~~--~Pal~~l~~lR~~lg--~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~ 141 (279)
.|+|-|.+-..+.+.|+++|+.|-+.... -|.-..|..+=+++| ++.++|+-+....=++ ...-.....+....
T Consensus 6 y~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g~~~~~li~t~~~~~r~L~--~~~~~~~~~~~~~~ 83 (117)
T COG1393 6 YGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLGDGVEELINTRGTTYRELN--LDKEDLSDEELIEA 83 (117)
T ss_pred EeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcCccHHHHHHhccchHHHcC--CcccccChHHHHHH
Confidence 36788888999999999999999554333 566677888888888 8999999776655544 23334455555555
Q ss_pred HHHHHHHcCCceEEEEec
Q 023655 142 MANALQRFGLKRALVVHS 159 (279)
Q Consensus 142 ~a~~~~~lg~~~~lvv~G 159 (279)
+.+--.++ +|-++|.+
T Consensus 84 i~~~~~Li--kRPivv~~ 99 (117)
T COG1393 84 LLENPSLI--KRPIVVDN 99 (117)
T ss_pred HHhChhhc--cCCeEEeC
Confidence 44444333 34566654
No 24
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=66.00 E-value=61 Score=28.57 Aligned_cols=72 Identities=10% Similarity=0.051 Sum_probs=50.4
Q ss_pred cceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCC-----CCHHHHHHHHHhcC
Q 023655 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID-----LDPEGVRRCVDEAG 85 (279)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~-----~~~~~~~~~l~~~g 85 (279)
++|+-||=++|.+.++-..-+---+.+.|++|+.-.|.+.-+.....+.|+.+|+++. .+...+.+.|.+.+
T Consensus 5 ~~D~DGtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~~~~~~~~l~~~~ 81 (249)
T TIGR01457 5 LIDLDGTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTASMATADYMNDLK 81 (249)
T ss_pred EEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeHHHHHHHHHHhcC
Confidence 5788899888888766333333357788999998877665555667889999999865 23344456676653
No 25
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=65.80 E-value=4.7 Score=37.13 Aligned_cols=45 Identities=24% Similarity=0.315 Sum_probs=33.9
Q ss_pred eeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHH
Q 023655 16 DIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEA 65 (279)
Q Consensus 16 D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~ 65 (279)
=+.|-||.|+.| ++.+.|+-+|+.|.+|+.-.-+ +.....|+|..
T Consensus 5 ~~~GKGGVGKTT--~aaA~A~~~A~~G~rtLlvS~D---pa~~L~d~l~~ 49 (305)
T PF02374_consen 5 FFGGKGGVGKTT--VAAALALALARRGKRTLLVSTD---PAHSLSDVLGQ 49 (305)
T ss_dssp EEEESTTSSHHH--HHHHHHHHHHHTTS-EEEEESS---TTTHHHHHHTS
T ss_pred EEecCCCCCcHH--HHHHHHHHHhhCCCCeeEeecC---CCccHHHHhCC
Confidence 368999999998 7888899999999999987543 44446666653
No 26
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=61.09 E-value=82 Score=30.41 Aligned_cols=135 Identities=15% Similarity=0.195 Sum_probs=74.4
Q ss_pred CcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHH----HHcCCCC--CCCHHHHHHHHHh---
Q 023655 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVL----EALGVVI--DLDPEGVRRCVDE--- 83 (279)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvL----e~LGi~~--~~~~~~~~~~l~~--- 83 (279)
..+=++|.+|.|+.|.-...++.+.+-..|.+|..-..+ +.+.|..+-| +.+|+++ ..++++..+.+++
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D--~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~ 299 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD--TYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRD 299 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC--ccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCC
Confidence 456689999999974322222222222457788865443 3455554444 3477775 4566666666654
Q ss_pred cCeEEEeCCccChhhh-chHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCceEEEEe
Q 023655 84 AGIGFMMSTKYHPAMK-FVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (279)
Q Consensus 84 ~g~~fl~~~~~~Pal~-~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~lvv~ 158 (279)
..+.++..+-+.|... .+..+++-+. ...+|......+-.-..+.-...+.+.+..++....++-+
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~---------~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TK 366 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIE---------FSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTK 366 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHh---------ccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEec
Confidence 5688888887776632 2334444333 0123432222233334445555666777777875544444
No 27
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=54.78 E-value=37 Score=29.80 Aligned_cols=98 Identities=18% Similarity=0.267 Sum_probs=69.2
Q ss_pred hHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCCCHHHHHHHHHhcCeEEEeCCccChhhhchHHHHhhhCC
Q 023655 31 STGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKV 110 (279)
Q Consensus 31 s~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~~~~~~~~~l~~~g~~fl~~~~~~Pal~~l~~lR~~lg~ 110 (279)
+--+|+.||.+|+-|..-|=.+-+- ..-.|+ -.++++.+++.+ ..|.+.|+..-+-.+| .||.
T Consensus 56 t~~aAl~Lada~vdvI~Y~CtsgS~-------i~G~~~-----d~ei~~~ie~~~----~v~vvTts~Avv~aL~-al~a 118 (238)
T COG3473 56 TERAALELADAGVDVIVYGCTSGSL-------IGGPGY-----DKEIAQRIEEAK----GVPVVTTSTAVVEALN-ALGA 118 (238)
T ss_pred HHHHHHhcCccccCEEEEeccceee-------ecCCch-----hHHHHHHHHhcc----CCceeechHHHHHHHH-hhCc
Confidence 4458999999999999877544332 222233 356777777776 5788888887777775 6888
Q ss_pred CChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCceEEEEecCC
Q 023655 111 KTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEG 161 (279)
Q Consensus 111 Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~lvv~GeG 161 (279)
+.+ -++.| |-.+.-+++.+.+...|+ ..+=++|=|
T Consensus 119 ~ri-----~vlTP----------Y~~evn~~e~ef~~~~Gf-eiv~~~~Lg 153 (238)
T COG3473 119 QRI-----SVLTP----------YIDEVNQREIEFLEANGF-EIVDFKGLG 153 (238)
T ss_pred ceE-----EEecc----------chhhhhhHHHHHHHhCCe-EEEEeeccC
Confidence 776 44555 566778889999999999 566666644
No 28
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=54.32 E-value=32 Score=30.56 Aligned_cols=73 Identities=21% Similarity=0.134 Sum_probs=50.0
Q ss_pred cceeecCCCCCCC----cccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCC-----CCHHHHHHHHHhc
Q 023655 14 AVDIVGTGGDGAN----TVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID-----LDPEGVRRCVDEA 84 (279)
Q Consensus 14 ~~D~~gtggdG~~----t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~-----~~~~~~~~~l~~~ 84 (279)
++|+-||=++|.. -++=+.-+---+.+.|++++.-.|++..+.....+.|+.+|+++. .+...+.+.|.+.
T Consensus 5 ~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i~ts~~~~~~~l~~~ 84 (257)
T TIGR01458 5 LLDISGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFTPAPAARQLLEEK 84 (257)
T ss_pred EEeCCCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEcHHHHHHHHHHhc
Confidence 4677777555443 344333344456778999999999988877788999999999864 1224456777776
Q ss_pred Ce
Q 023655 85 GI 86 (279)
Q Consensus 85 g~ 86 (279)
++
T Consensus 85 ~~ 86 (257)
T TIGR01458 85 QL 86 (257)
T ss_pred CC
Confidence 54
No 29
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=53.34 E-value=50 Score=27.80 Aligned_cols=89 Identities=24% Similarity=0.200 Sum_probs=61.6
Q ss_pred eecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCC-----CCCcCc--HHHHHHHcC-CCCCCCHHHHHHHHHhc----
Q 023655 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRS-----SSSACG--SADVLEALG-VVIDLDPEGVRRCVDEA---- 84 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~-----~~~~~G--s~dvLe~LG-i~~~~~~~~~~~~l~~~---- 84 (279)
+.|++|.|+ ||.|..+.+..|++=.--|+-- ..+..| ....++.=. ++=.....-+...+++.
T Consensus 5 ilG~pGaGK-----~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~ 79 (178)
T COG0563 5 ILGPPGAGK-----STLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKA 79 (178)
T ss_pred EECCCCCCH-----HHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccC
Confidence 689999999 7889999999888877655422 223344 344555555 33334456677777775
Q ss_pred CeEEEeCCccChhhhchHHHHhhhCC
Q 023655 85 GIGFMMSTKYHPAMKFVRPVRKKLKV 110 (279)
Q Consensus 85 g~~fl~~~~~~Pal~~l~~lR~~lg~ 110 (279)
||-|...|...+....+-..-+++|.
T Consensus 80 ~~I~dg~PR~~~qa~~l~r~l~~~g~ 105 (178)
T COG0563 80 GFILDGFPRTLCQARALKRLLKELGV 105 (178)
T ss_pred eEEEeCCCCcHHHHHHHHHHHHHcCC
Confidence 67777889998888877777666664
No 30
>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=52.04 E-value=1.1e+02 Score=27.70 Aligned_cols=25 Identities=12% Similarity=0.250 Sum_probs=16.2
Q ss_pred eeechhhHHHHHHHHHHcCCceEEE
Q 023655 132 GVYNENLVLKMANALQRFGLKRALV 156 (279)
Q Consensus 132 Gv~h~~~~~~~a~~~~~lg~~~~lv 156 (279)
.+.+|+....+...-..+|.+..++
T Consensus 207 ~l~~pe~ia~~~~t~~~lglegg~l 231 (310)
T COG2313 207 RLESPEEIARILATKWQLGLEGGLL 231 (310)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCceE
Confidence 5666777766666666777655444
No 31
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=51.92 E-value=1.8e+02 Score=26.00 Aligned_cols=163 Identities=22% Similarity=0.277 Sum_probs=95.2
Q ss_pred CCCCHHHHHHHHHhcCeEEEeC-CccChhhhchHHHHhhhCCC---ChhHhhh--hccCCCCCCceEEeeechhhHHHHH
Q 023655 70 IDLDPEGVRRCVDEAGIGFMMS-TKYHPAMKFVRPVRKKLKVK---TVFNILG--PMLNPACVPFAVVGVYNENLVLKMA 143 (279)
Q Consensus 70 ~~~~~~~~~~~l~~~g~~fl~~-~~~~Pal~~l~~lR~~lg~R---t~~ntl~--pLlNP~~~~~~v~Gv~h~~~~~~~a 143 (279)
++.+-+++.+...+.|+--+.. +++...-.++..+=+.+++. .++|.=| |++.| ......+
T Consensus 48 VATDde~I~~av~~~G~~avmT~~~h~SGTdR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p-------------~~I~~~~ 114 (247)
T COG1212 48 VATDDERIAEAVQAFGGEAVMTSKDHQSGTDRLAEVVEKLGLPDDEIIVNVQGDEPFIEP-------------EVIRAVA 114 (247)
T ss_pred EEcCCHHHHHHHHHhCCEEEecCCCCCCccHHHHHHHHhcCCCcceEEEEccCCCCCCCH-------------HHHHHHH
Confidence 5567789999999987776666 55556688999999999987 6777765 77777 6677777
Q ss_pred HHHHHcCCceE-EEEecCCccccccCCCeeEEEE--eCCeEEEEEeCCCCCCCCC----CC-------------C---CC
Q 023655 144 NALQRFGLKRA-LVVHSEGLDEMSPLGPGLILDV--TQEKIERFSFDPLDYGIPR----CT-------------L---ES 200 (279)
Q Consensus 144 ~~~~~lg~~~~-lvv~GeG~dE~s~~~~t~v~~~--~~g~i~~~~~~p~~~gl~~----~~-------------~---~~ 200 (279)
+.++.-..+=+ ++++-...+|. ..|+.|-.+ .+|..-.|+-.|-.|+.+. .. + -.
T Consensus 115 ~~L~~~~~~~aTl~~~i~~~ee~--~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~~ 192 (247)
T COG1212 115 ENLENSNADMATLAVKITDEEEA--FNPNVVKVVLDKEGYALYFSRAPIPYGRDNFGGTPFLRHIGIYAYRAGFLERFVA 192 (247)
T ss_pred HHHHhCCcceeeeeeecCCHHHh--cCCCcEEEEEcCCCcEEEEEcCCCCCcccccCCcchhheeehHHhHHHHHHHHHh
Confidence 77776544323 34343333343 233333233 3455566666665555331 00 0 11
Q ss_pred CCC--CChHHHHHHHHHHhCCCC-h-hHHHHHHHHHHHHHHHcCcCCCHHHHHHHHHHHHH
Q 023655 201 LQG--GGPAYNAEVLRRVLSGER-G-AIADALILNAAAALLVSCKVNTLAEGVALAREIQL 257 (279)
Q Consensus 201 ~~~--~~~~~~a~~~~~vL~G~~-~-~~~~~v~~naa~~L~~~g~~~~~~eg~~~a~~~l~ 257 (279)
++. ....+..+.++.+|.|+. + ...+ |+ ...| -|-+|=+++|++.+.
T Consensus 193 ~~ps~LE~~E~LEQLR~Le~G~kI~v~i~~----~~----p~~g--VDT~EDLe~v~~~~~ 243 (247)
T COG1212 193 LKPSPLEKIESLEQLRVLENGEKIHVEIVK----EV----PSIG--VDTPEDLERVRKILS 243 (247)
T ss_pred cCCchhHHHHHHHHHHHHHcCCeeEEEEec----cC----CCCC--CCCHHHHHHHHHHHH
Confidence 111 124556777888899975 2 1111 00 1122 255667778777764
No 32
>PRK12928 lipoyl synthase; Provisional
Probab=50.87 E-value=57 Score=29.82 Aligned_cols=109 Identities=14% Similarity=0.188 Sum_probs=72.1
Q ss_pred HHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCCCHHHHHHHHH---hcC--e----EEE--eCCccChhhhchHH
Q 023655 35 SILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVD---EAG--I----GFM--MSTKYHPAMKFVRP 103 (279)
Q Consensus 35 A~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~~~~~~~~~l~---~~g--~----~fl--~~~~~~Pal~~l~~ 103 (279)
-..+.++|..|+.|+-. ++.+++..+.=. .+.++..+.++ +.| + .|| +.+..---...+..
T Consensus 156 L~~l~~Ag~~i~~hnlE------t~~~vl~~m~r~--~t~e~~le~l~~ak~~gp~i~~~s~iIvG~GET~ed~~etl~~ 227 (290)
T PRK12928 156 LATVLAAKPDVFNHNLE------TVPRLQKAVRRG--ADYQRSLDLLARAKELAPDIPTKSGLMLGLGETEDEVIETLRD 227 (290)
T ss_pred HHHHHHcCchhhcccCc------CcHHHHHHhCCC--CCHHHHHHHHHHHHHhCCCceecccEEEeCCCCHHHHHHHHHH
Confidence 33455677888888731 247888877522 45555544443 443 2 222 23555445555666
Q ss_pred HHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCceE
Q 023655 104 VRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRA 154 (279)
Q Consensus 104 lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~ 154 (279)
+| ++++.. =++++-+-|..-.+-|..+++|+-.+.+.+.+..+|++.+
T Consensus 228 Lr-el~~d~--v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~ 275 (290)
T PRK12928 228 LR-AVGCDR--LTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHV 275 (290)
T ss_pred HH-hcCCCE--EEEEcCCCCCccCCceeeccCHHHHHHHHHHHHHcCCcee
Confidence 65 466633 3567888898888899999999999999999999999643
No 33
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=50.21 E-value=87 Score=28.56 Aligned_cols=121 Identities=17% Similarity=0.161 Sum_probs=59.8
Q ss_pred ceeecCCCCCCCcccchHHHHHHHHcCC-CcEEeeCCCCCCCcCcHHHHHHH----c--CCCCCCCHHHHHHHHHhcCeE
Q 023655 15 VDIVGTGGDGANTVNISTGASILAAACG-AKVAKQGSRSSSSACGSADVLEA----L--GVVIDLDPEGVRRCVDEAGIG 87 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G-~~V~kHG~~~~~~~~Gs~dvLe~----L--Gi~~~~~~~~~~~~l~~~g~~ 87 (279)
+|++|.-.++.+.+.-...+-..+...| +++..|.+...++ ....+.++. + |+.+..+++. .+.+.+.|+.
T Consensus 139 ~Dl~g~E~~~~~~~~~f~~~~~~ar~~g~l~~t~HaGE~~~~-~~v~~~~~~~~~RIgHg~~~~~~p~~-~~~l~~~~i~ 216 (305)
T cd00443 139 IDLVGDESKGENPLRDFYSYYEYARRLGLLGLTLHCGETGNR-EELLQALLLLPDRIGHGIFLLKHPEL-IYLVKLRNIP 216 (305)
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHHcCCcceEEeecCCCCh-HHHHHHHHhccceeeceEecCCCHHH-HHHHHHcCCE
Confidence 6666644443111111222223334569 9999999986222 123344432 2 4455555555 4556666665
Q ss_pred EEeCC--ccCh------hhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcC
Q 023655 88 FMMST--KYHP------AMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFG 150 (279)
Q Consensus 88 fl~~~--~~~P------al~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg 150 (279)
+-.-| ++.= .-..+..++ +.|++-.+||=.| ++|+..+.+-|..+....|
T Consensus 217 ie~CP~SN~~~~~~~~~~~hP~~~~~-~~G~~v~i~TDd~------------~~~~~~l~~E~~~~~~~~~ 274 (305)
T cd00443 217 IEVCPTSNVVLGTVQSYEKHPFMRFF-KAGLPVSLSTDDP------------GIFGTSLSEEYSLAAKTFG 274 (305)
T ss_pred EEECcchhhhhcCCCChhhChHHHHH-HCCCeEEEeCCCC------------cccCCChHHHHHHHHHHcC
Confidence 55443 3310 001123332 3477767776544 4555566666666555544
No 34
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=49.69 E-value=71 Score=28.52 Aligned_cols=82 Identities=13% Similarity=0.238 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHhcCeEEEeCCccC----hhhhchHHHH---hhh--------CCCChhHhhhhccCCCCCCceEEeeech
Q 023655 72 LDPEGVRRCVDEAGIGFMMSTKYH----PAMKFVRPVR---KKL--------KVKTVFNILGPMLNPACVPFAVVGVYNE 136 (279)
Q Consensus 72 ~~~~~~~~~l~~~g~~fl~~~~~~----Pal~~l~~lR---~~l--------g~Rt~~ntl~pLlNP~~~~~~v~Gv~h~ 136 (279)
.+|.+.++.+.+.|+-+++.-++. +.-.++-.++ +.+ |+||. +.++.++. ++..+.++|-+--
T Consensus 31 ~~P~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~~~~~~vQvGGGIRs~-~~v~~ll~-~G~~rViiGt~av 108 (241)
T COG0106 31 DDPLEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILEATDVPVQVGGGIRSL-EDVEALLD-AGVARVIIGTAAV 108 (241)
T ss_pred CCHHHHHHHHHHcCCcEEEEeeccccccCCcccHHHHHHHHHhCCCCEEeeCCcCCH-HHHHHHHH-CCCCEEEEeccee
Confidence 478888899999999999874332 3333333333 333 67765 88899999 7888888886655
Q ss_pred hhHHHHHHHHHHcCCceEEE
Q 023655 137 NLVLKMANALQRFGLKRALV 156 (279)
Q Consensus 137 ~~~~~~a~~~~~lg~~~~lv 156 (279)
+=.+.+.++++..| ++.+|
T Consensus 109 ~~p~~v~~~~~~~g-~rivv 127 (241)
T COG0106 109 KNPDLVKELCEEYG-DRIVV 127 (241)
T ss_pred cCHHHHHHHHHHcC-CcEEE
Confidence 55666788888888 56555
No 35
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=49.48 E-value=13 Score=31.90 Aligned_cols=32 Identities=38% Similarity=0.462 Sum_probs=25.2
Q ss_pred ceeecCCCCCCCcccchHHHHHHHHcCCCcEEee
Q 023655 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kH 48 (279)
|=+.|-||.|+.| ++.-.|-.+|+.|.+|+.-
T Consensus 3 iav~gKGGvGKTt--~~~nLA~~la~~G~rvLli 34 (212)
T cd02117 3 IAIYGKGGIGKST--TSQNLSAALAEMGKKVLQV 34 (212)
T ss_pred EEEECCCcCcHHH--HHHHHHHHHHHCCCcEEEE
Confidence 4467999999985 4555688889999999864
No 36
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=48.15 E-value=99 Score=30.29 Aligned_cols=131 Identities=22% Similarity=0.342 Sum_probs=83.9
Q ss_pred ceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCCCHHHHHHHHHhcCeEEEeC-Cc
Q 023655 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMS-TK 93 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~~~~~~~~~l~~~g~~fl~~-~~ 93 (279)
+-++|.||-|.. ..|.+|...|++|- |++...+. ..+.|+++|+.+-...+. +..++..=+.+=.+ +.
T Consensus 10 iHfIGIgG~GMs------glA~iL~~~G~~Vs--GSD~~~~~--~t~~L~~~G~~i~~gh~~-~ni~~~~~VV~s~Ai~~ 78 (459)
T COG0773 10 IHFIGIGGIGMS------GLAEILLNLGYKVS--GSDLAESP--MTQRLEALGIEIFIGHDA-ENILDADVVVVSNAIKE 78 (459)
T ss_pred EEEEeeccccHH------HHHHHHHhCCCceE--CccccccH--HHHHHHHCCCeEeCCCCH-HHcCCCceEEEecccCC
Confidence 555666666653 45899999999998 77665544 889999999987643322 22222222222222 55
Q ss_pred cChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechh-hHHHHHHHHHHcCCceEEEEec
Q 023655 94 YHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNEN-LVLKMANALQRFGLKRALVVHS 159 (279)
Q Consensus 94 ~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~-~~~~~a~~~~~lg~~~~lvv~G 159 (279)
=+|.+ ....++.+-+-+=--.|+-|+.. +....|.|-=-|. .-.+++.++...|.+-..++-|
T Consensus 79 ~NpEi--~~A~e~~ipi~~r~e~Laelm~~-~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iGG 142 (459)
T COG0773 79 DNPEI--VAALERGIPVISRAEMLAELMRF-RTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIGG 142 (459)
T ss_pred CCHHH--HHHHHcCCCeEcHHHHHHHHHhC-CeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEECc
Confidence 56666 34444556666667788888888 5556666654443 4566788888888876777665
No 37
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=46.39 E-value=1.3e+02 Score=28.16 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=52.2
Q ss_pred cchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCCCHHHHHHHHHh-cCeEEEeCCccChhhhchHHHHhh
Q 023655 29 NISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDE-AGIGFMMSTKYHPAMKFVRPVRKK 107 (279)
Q Consensus 29 nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~~~~~~~~~l~~-~g~~fl~~~~~~Pal~~l~~lR~~ 107 (279)
+|-|+.|.++|..|.+|.+-|.+ ++.+.+.-+. .|-.|++--.+.|.++.-.++.+.
T Consensus 11 swGTALA~~la~ng~~V~lw~r~----------------------~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a 68 (329)
T COG0240 11 SWGTALAKVLARNGHEVRLWGRD----------------------EEIVAEINETRENPKYLPGILLPPNLKATTDLAEA 68 (329)
T ss_pred hHHHHHHHHHHhcCCeeEEEecC----------------------HHHHHHHHhcCcCccccCCccCCcccccccCHHHH
Confidence 49999999999999999988764 3333333332 466677766666666655555554
Q ss_pred hCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHH
Q 023655 108 LKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANA 145 (279)
Q Consensus 108 lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~ 145 (279)
+. ++...|++|.|..+.+...++
T Consensus 69 ~~---------------~ad~iv~avPs~~~r~v~~~l 91 (329)
T COG0240 69 LD---------------GADIIVIAVPSQALREVLRQL 91 (329)
T ss_pred Hh---------------cCCEEEEECChHHHHHHHHHH
Confidence 33 255667777776666655555
No 38
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=45.90 E-value=14 Score=32.69 Aligned_cols=31 Identities=35% Similarity=0.470 Sum_probs=24.4
Q ss_pred eeecCCCCCCCcccchHHHHHHHHcCCCcEEee
Q 023655 16 DIVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (279)
Q Consensus 16 D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kH 48 (279)
=+.|-||.|+.| +++-.|..||..|.+|+.-
T Consensus 4 ~v~gKGGvGKTT--~a~nLA~~la~~G~rvlli 34 (267)
T cd02032 4 AVYGKGGIGKST--TSSNLSVALAKRGKKVLQI 34 (267)
T ss_pred EEecCCCCCHHH--HHHHHHHHHHHCCCcEEEE
Confidence 356899999986 4555678889999999854
No 39
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=45.67 E-value=2.8e+02 Score=26.53 Aligned_cols=129 Identities=14% Similarity=0.169 Sum_probs=68.7
Q ss_pred CcceeecCCCCCCCcccchHHHHHHHH-------cCCCcEEeeCCCCCCCcCcHHHHHHH----cCCCCC--CCHHHHHH
Q 023655 13 DAVDIVGTGGDGANTVNISTGASILAA-------ACGAKVAKQGSRSSSSACGSADVLEA----LGVVID--LDPEGVRR 79 (279)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aA~vlA-------~~G~~V~kHG~~~~~~~~Gs~dvLe~----LGi~~~--~~~~~~~~ 79 (279)
..+=++|..|.|+. |.++.+++ ..|.+|..-..+ +.+.++.+-|.. +|+|+. .+.+++.+
T Consensus 175 ~vi~lvGptGvGKT-----TT~aKLA~~~~~~~~~~g~~V~lit~D--t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~ 247 (388)
T PRK12723 175 RVFILVGPTGVGKT-----TTIAKLAAIYGINSDDKSLNIKIITID--NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKE 247 (388)
T ss_pred eEEEEECCCCCCHH-----HHHHHHHHHHHhhhccCCCeEEEEecc--CccHHHHHHHHHHhhcCCcceEeeCcHHHHHH
Confidence 35558999999995 33333333 247788865544 346665444444 788854 45566665
Q ss_pred HH---HhcCeEEEeCCccChhh-hchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeec-hhhHHHHHHHHHHcCCceE
Q 023655 80 CV---DEAGIGFMMSTKYHPAM-KFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYN-ENLVLKMANALQRFGLKRA 154 (279)
Q Consensus 80 ~l---~~~g~~fl~~~~~~Pal-~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h-~~~~~~~a~~~~~lg~~~~ 154 (279)
.+ ....+.++..+-.+|.. ..+..+++.+. .+.+ |. -.+.|+.... ..-+..+.+.+..+|.+..
T Consensus 248 ~L~~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~------~~~~---~~-e~~LVlsat~~~~~~~~~~~~~~~~~~~~~ 317 (388)
T PRK12723 248 EITQSKDFDLVLVDTIGKSPKDFMKLAEMKELLN------ACGR---DA-EFHLAVSSTTKTSDVKEIFHQFSPFSYKTV 317 (388)
T ss_pred HHHHhCCCCEEEEcCCCCCccCHHHHHHHHHHHH------hcCC---CC-eEEEEEcCCCCHHHHHHHHHHhcCCCCCEE
Confidence 44 45678888887777732 12334443332 1111 11 2344444433 2333333444445677555
Q ss_pred EEEe
Q 023655 155 LVVH 158 (279)
Q Consensus 155 lvv~ 158 (279)
++=|
T Consensus 318 I~TK 321 (388)
T PRK12723 318 IFTK 321 (388)
T ss_pred EEEe
Confidence 5555
No 40
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=44.97 E-value=19 Score=29.46 Aligned_cols=31 Identities=29% Similarity=0.431 Sum_probs=24.4
Q ss_pred ecCCCCCCCcccchHHHHHHHHcCCCcEEeeCC
Q 023655 18 VGTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (279)
Q Consensus 18 ~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~ 50 (279)
.+-||.|+.| ++...|..+|+.|.+|+.-=.
T Consensus 6 s~kgG~GKTt--~a~~LA~~la~~g~~vllvD~ 36 (169)
T cd02037 6 SGKGGVGKST--VAVNLALALAKLGYKVGLLDA 36 (169)
T ss_pred cCCCcCChhH--HHHHHHHHHHHcCCcEEEEeC
Confidence 4569999986 566678889999999987543
No 41
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=44.97 E-value=88 Score=26.68 Aligned_cols=130 Identities=22% Similarity=0.350 Sum_probs=71.0
Q ss_pred ceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHH----HHcCCCCC-----CCHHH-HHHHHH--
Q 023655 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVL----EALGVVID-----LDPEG-VRRCVD-- 82 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvL----e~LGi~~~-----~~~~~-~~~~l~-- 82 (279)
+=.+|..|.|+.| -+.=+++..... |.+|..... .+.|.|..|-| +.+|+|+. .++.+ +.+.++
T Consensus 4 i~lvGptGvGKTT-t~aKLAa~~~~~-~~~v~lis~--D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 4 IALVGPTGVGKTT-TIAKLAARLKLK-GKKVALISA--DTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEESTTSSHHH-HHHHHHHHHHHT-T--EEEEEE--STSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCchHh-HHHHHHHHHhhc-cccceeecC--CCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 4478999999953 122223333333 888888775 34678865555 56688752 23433 334444
Q ss_pred -h--cCeEEEeCCccChhhhc-hHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCceEEEEe
Q 023655 83 -E--AGIGFMMSTKYHPAMKF-VRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (279)
Q Consensus 83 -~--~g~~fl~~~~~~Pal~~-l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~lvv~ 158 (279)
+ ..+.++..+-.+|.... +..+++ +.+.+ +|...-..+-.-.+.+-.+...+..+.++.+..++=|
T Consensus 80 ~~~~~D~vlIDT~Gr~~~d~~~~~el~~------~~~~~----~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTK 149 (196)
T PF00448_consen 80 RKKGYDLVLIDTAGRSPRDEELLEELKK------LLEAL----NPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTK 149 (196)
T ss_dssp HHTTSSEEEEEE-SSSSTHHHHHHHHHH------HHHHH----SSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEES
T ss_pred hhcCCCEEEEecCCcchhhHHHHHHHHH------Hhhhc----CCccceEEEecccChHHHHHHHHHhhcccCceEEEEe
Confidence 3 45899999988886543 344443 22222 4432223333444555555566666677886666556
No 42
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=44.81 E-value=3.1e+02 Score=26.75 Aligned_cols=131 Identities=10% Similarity=0.136 Sum_probs=74.3
Q ss_pred CcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHH----HcCCCCC--CCHHHHHHHHHh---
Q 023655 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLE----ALGVVID--LDPEGVRRCVDE--- 83 (279)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe----~LGi~~~--~~~~~~~~~l~~--- 83 (279)
..+=++|.+|.|+.|+=.- .|.-+...|.+|..--.+ +.+.++.+-|. .+|+++. .+++++.+.++.
T Consensus 242 ~vI~LVGptGvGKTTTiaK--LA~~L~~~GkkVglI~aD--t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAK--MAWQFHGKKKTVGFITTD--HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred cEEEEECCCCCcHHHHHHH--HHHHHHHcCCcEEEEecC--CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 4567899999999642221 222345668888865443 44555444333 4688853 678888777743
Q ss_pred ---cCeEEEeCCccChh-hhchHHHHhhhCCCChhHhhhhccCCCCCCceEEee-echhhHHHHHHHHHHcCCceEEEEe
Q 023655 84 ---AGIGFMMSTKYHPA-MKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGV-YNENLVLKMANALQRFGLKRALVVH 158 (279)
Q Consensus 84 ---~g~~fl~~~~~~Pa-l~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv-~h~~~~~~~a~~~~~lg~~~~lvv~ 158 (279)
..+.++..+--++. ...+..+++.+... .|- ..+.|++. ....-....++.+..++.+..++=|
T Consensus 318 ~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~----------~Pd-evlLVLsATtk~~d~~~i~~~F~~~~idglI~TK 386 (436)
T PRK11889 318 EARVDYILIDTAGKNYRASETVEEMIETMGQV----------EPD-YICLTLSASMKSKDMIEIITNFKDIHIDGIVFTK 386 (436)
T ss_pred ccCCCEEEEeCccccCcCHHHHHHHHHHHhhc----------CCC-eEEEEECCccChHHHHHHHHHhcCCCCCEEEEEc
Confidence 36788888655553 23355555544321 121 12444443 2333334566667778886555555
No 43
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=44.51 E-value=16 Score=32.80 Aligned_cols=33 Identities=30% Similarity=0.359 Sum_probs=25.5
Q ss_pred ceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeC
Q 023655 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQG 49 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG 49 (279)
+=++|=||.|+.| .+.-.|..||..|.+|+.--
T Consensus 4 i~~~gKGGVGKTT--~a~nLA~~La~~G~rVLliD 36 (279)
T PRK13230 4 FCFYGKGGIGKST--TVCNIAAALAESGKKVLVVG 36 (279)
T ss_pred EEEECCCCCcHHH--HHHHHHHHHHhCCCEEEEEe
Confidence 4467999999985 34445888899999998753
No 44
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=44.22 E-value=94 Score=25.38 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=14.4
Q ss_pred HHHHHcCCCcEEeeC
Q 023655 35 SILAAACGAKVAKQG 49 (279)
Q Consensus 35 A~vlA~~G~~V~kHG 49 (279)
|..+++.|.++..+|
T Consensus 43 a~~l~~LG~~~~~~~ 57 (196)
T cd00287 43 AVALARLGVSVTLVG 57 (196)
T ss_pred HHHHHHCCCcEEEEE
Confidence 899999999999999
No 45
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=43.41 E-value=17 Score=32.47 Aligned_cols=31 Identities=32% Similarity=0.445 Sum_probs=24.9
Q ss_pred ceeecCCCCCCCcccchHHHHHHHHcCCCcEEe
Q 023655 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAK 47 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~k 47 (279)
|=+.|=||.|+.| ++.-.|..||..|.+|+.
T Consensus 3 ia~~gKGGVGKTT--~a~nLA~~La~~G~~Vll 33 (275)
T TIGR01287 3 IAIYGKGGIGKST--TTQNIAAALAEMGKKVMI 33 (275)
T ss_pred eEEeCCCcCcHHH--HHHHHHHHHHHCCCeEEE
Confidence 3467999999996 455668888899999986
No 46
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=43.31 E-value=2.7e+02 Score=27.07 Aligned_cols=130 Identities=15% Similarity=0.242 Sum_probs=71.1
Q ss_pred cceeecCCCCCCCcccchHHHHHHH----HcCCCcEEeeCCCCCCCcCcHHHHH----HHcCCCCCC--CHHHHHHHHHh
Q 023655 14 AVDIVGTGGDGANTVNISTGASILA----AACGAKVAKQGSRSSSSACGSADVL----EALGVVIDL--DPEGVRRCVDE 83 (279)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aA~vl----A~~G~~V~kHG~~~~~~~~Gs~dvL----e~LGi~~~~--~~~~~~~~l~~ 83 (279)
++=++|.+|.|+.| .++.++ ...|.+|..-..+. .+.++.+.| +.+|+++.. +..++.+.+++
T Consensus 225 vi~lvGptGvGKTT-----taaKLA~~~~~~~G~~V~Lit~Dt--~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~ 297 (432)
T PRK12724 225 VVFFVGPTGSGKTT-----SIAKLAAKYFLHMGKSVSLYTTDN--YRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR 297 (432)
T ss_pred EEEEECCCCCCHHH-----HHHHHHHHHHHhcCCeEEEecccc--hhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh
Confidence 45689999999953 333333 34588888766544 444543333 566887642 25566666654
Q ss_pred c--CeEEEeCCccChh-hhchHHHHhhhCCCChhHhhhhccCCCCCCceEE-eeechhhHHHHHHHHHHcCCceEEEEe
Q 023655 84 A--GIGFMMSTKYHPA-MKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVV-GVYNENLVLKMANALQRFGLKRALVVH 158 (279)
Q Consensus 84 ~--g~~fl~~~~~~Pa-l~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~-Gv~h~~~~~~~a~~~~~lg~~~~lvv~ 158 (279)
. .+.++..+-+.|. ...+-.+++.+.. +++ .+|. -.+.|+ +.+++.-.....+.++.+|.+..++-|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~------~~~-~~~~-e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTK 368 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSC------FGE-KDSV-ENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTK 368 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHh------hcC-CCCC-eEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEc
Confidence 4 4566666666543 3333344332221 111 0121 123333 345554666677777888886666655
No 47
>PLN02428 lipoic acid synthase
Probab=43.13 E-value=1.2e+02 Score=28.55 Aligned_cols=111 Identities=14% Similarity=0.136 Sum_probs=70.4
Q ss_pred HHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCCCHHHHHHHHH---hc--Ce----EEEe--CCccChhhhchH
Q 023655 34 ASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVD---EA--GI----GFMM--STKYHPAMKFVR 102 (279)
Q Consensus 34 aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~~~~~~~~~l~---~~--g~----~fl~--~~~~~Pal~~l~ 102 (279)
+.-.++.+|..++-|+-.. +..++..+.- ...+.++..+.|+ +. |+ .||. -+..---...+.
T Consensus 197 lL~~L~eAG~d~i~hnlET------v~rL~~~Ir~-~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGLGET~Edv~e~l~ 269 (349)
T PLN02428 197 AVETVATSGLDVFAHNIET------VERLQRIVRD-PRAGYKQSLDVLKHAKESKPGLLTKTSIMLGLGETDEEVVQTME 269 (349)
T ss_pred HHHHHHHcCCCEEccCccC------cHHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCeEEEeEEEecCCCHHHHHHHHH
Confidence 5666788999998888653 2234444421 1233443333332 22 22 2222 254444444455
Q ss_pred HHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCceE
Q 023655 103 PVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRA 154 (279)
Q Consensus 103 ~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~ 154 (279)
.+| ++|+..+ +++..+.|..-.+.|.-+.||+-.+.+.+....+|++.+
T Consensus 270 ~Lr-elgvd~v--tigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v 318 (349)
T PLN02428 270 DLR-AAGVDVV--TFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYV 318 (349)
T ss_pred HHH-HcCCCEE--eeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceE
Confidence 554 5666443 778888998888999999999999999999999999643
No 48
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=42.32 E-value=52 Score=29.62 Aligned_cols=71 Identities=14% Similarity=0.247 Sum_probs=40.6
Q ss_pred HHHHHHhcCeEEEeCCcc---Ch---hhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcC
Q 023655 77 VRRCVDEAGIGFMMSTKY---HP---AMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFG 150 (279)
Q Consensus 77 ~~~~l~~~g~~fl~~~~~---~P---al~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg 150 (279)
..+.|.+.+.-|+....- .+ .+.-...+++++|++++.|+..+ + .++.-.+.....+..+|
T Consensus 20 ~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r------------~-~n~~~l~~~L~~~~~~G 86 (272)
T TIGR00676 20 TVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCI------------G-ATREEIREILREYRELG 86 (272)
T ss_pred HHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeec------------C-CCHHHHHHHHHHHHHCC
Confidence 345566666666655321 11 23333556777888888776333 2 22233333344457788
Q ss_pred CceEEEEecC
Q 023655 151 LKRALVVHSE 160 (279)
Q Consensus 151 ~~~~lvv~Ge 160 (279)
.++.++++||
T Consensus 87 i~nvL~l~GD 96 (272)
T TIGR00676 87 IRHILALRGD 96 (272)
T ss_pred CCEEEEeCCC
Confidence 9889999984
No 49
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=42.22 E-value=58 Score=29.59 Aligned_cols=70 Identities=11% Similarity=0.069 Sum_probs=43.6
Q ss_pred HHHHHhcCeEEEeCCcc------ChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCC
Q 023655 78 RRCVDEAGIGFMMSTKY------HPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGL 151 (279)
Q Consensus 78 ~~~l~~~g~~fl~~~~~------~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~ 151 (279)
.+.|.+.+..|+....- .-.+.-...+++++|++++.|+..+=.|. -.+.+ ...-+..+|+
T Consensus 22 ~~~l~~~~p~fvsvT~~~~~~~~~~t~~~~~~l~~~~g~~~i~Hltcr~~~~------------~~l~~-~L~~~~~~Gi 88 (281)
T TIGR00677 22 MDRMVASGPLFIDITWGAGGTTAELTLTIASRAQNVVGVETCMHLTCTNMPI------------EMIDD-ALERAYSNGI 88 (281)
T ss_pred HHHHhhCCCCEEEeccCCCCcchhhHHHHHHHHHHhcCCCeeEEeccCCCCH------------HHHHH-HHHHHHHCCC
Confidence 34456667777765432 12455667788889999887774442222 22332 3334468899
Q ss_pred ceEEEEecC
Q 023655 152 KRALVVHSE 160 (279)
Q Consensus 152 ~~~lvv~Ge 160 (279)
++.++++||
T Consensus 89 ~niLal~GD 97 (281)
T TIGR00677 89 QNILALRGD 97 (281)
T ss_pred CEEEEECCC
Confidence 999999994
No 50
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=42.13 E-value=18 Score=32.48 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=26.4
Q ss_pred eecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCC
Q 023655 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSR 51 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~ 51 (279)
+.|.||+|+.| ++.-.|..+|+.|.+|..-=.+
T Consensus 63 ~S~kgGvGKSt--va~nLA~alA~~G~rVlliDaD 95 (265)
T COG0489 63 TSGKGGVGKST--VAVNLAAALAQLGKRVLLLDAD 95 (265)
T ss_pred EeCCCCCcHHH--HHHHHHHHHHhcCCcEEEEeCc
Confidence 56889999996 5667799999999999875433
No 51
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=40.25 E-value=19 Score=31.67 Aligned_cols=31 Identities=35% Similarity=0.453 Sum_probs=24.0
Q ss_pred ceeecCCCCCCCcccchHHHHHHHHcCCCcEEe
Q 023655 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAK 47 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~k 47 (279)
|=++|-||.|+.| ++.-.|..||..|.+|+.
T Consensus 4 iav~~KGGvGKTT--~~~nLA~~La~~G~kVll 34 (270)
T cd02040 4 IAIYGKGGIGKST--TTQNLSAALAEMGKKVMI 34 (270)
T ss_pred EEEEeCCcCCHHH--HHHHHHHHHHhCCCeEEE
Confidence 3356889999986 355567888899999995
No 52
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=39.79 E-value=24 Score=24.96 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=23.3
Q ss_pred eecCCCCCCCcccchHHHHHHHHcCCCcEEeeC
Q 023655 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQG 49 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG 49 (279)
++|.+|.|+.| ++...+..+++.|.+|..-.
T Consensus 4 ~~g~~G~Gktt--~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 4 VTGKGGVGKTT--LAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EECCCCCCHHH--HHHHHHHHHHHCCCeEEEEC
Confidence 56888888875 45566777788899998666
No 53
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=39.63 E-value=1.4e+02 Score=22.59 Aligned_cols=75 Identities=20% Similarity=0.229 Sum_probs=43.5
Q ss_pred CHHHHHHHHHhcCeEEEeCCc-cChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHH-cC
Q 023655 73 DPEGVRRCVDEAGIGFMMSTK-YHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQR-FG 150 (279)
Q Consensus 73 ~~~~~~~~l~~~g~~fl~~~~-~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~-lg 150 (279)
+.+++.+.+.+.+.-.+.... +.+....+..+-+.+. -.+| ....++|=.|+...+ .++++. .|
T Consensus 39 ~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k----------~~~p--~~~iv~GG~~~t~~~--~~~l~~~~~ 104 (121)
T PF02310_consen 39 PPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIK----------ERNP--NIPIVVGGPHATADP--EEILREYPG 104 (121)
T ss_dssp -HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHH----------TTCT--TSEEEEEESSSGHHH--HHHHHHHHT
T ss_pred CHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHH----------hcCC--CCEEEEECCchhcCh--HHHhccCcC
Confidence 347787878777666666655 6666666665555422 2222 234566666665554 344544 67
Q ss_pred CceEEEEecCCcc
Q 023655 151 LKRALVVHSEGLD 163 (279)
Q Consensus 151 ~~~~lvv~GeG~d 163 (279)
.+ .++.|||.+
T Consensus 105 ~D--~vv~GegE~ 115 (121)
T PF02310_consen 105 ID--YVVRGEGEE 115 (121)
T ss_dssp SE--EEEEETTSS
T ss_pred cc--eecCCChHH
Confidence 64 667788843
No 54
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=38.56 E-value=21 Score=31.81 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=25.1
Q ss_pred ceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeC
Q 023655 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQG 49 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG 49 (279)
|=++|=||.|+.| ++.-.|..||..|.+|+.-.
T Consensus 4 iav~gKGGVGKTT--~a~nLA~~La~~G~rVllvD 36 (273)
T PRK13232 4 IAIYGKGGIGKST--TTQNLTAALSTMGNKILLVG 36 (273)
T ss_pred EEEECCCCCcHHH--HHHHHHHHHHhhCCCeEEEe
Confidence 3355889999985 35556788899999998753
No 55
>PF11501 Nsp1: Non structural protein Nsp1; InterPro: IPR021590 Nsp1 is the N-terminal cleavage product from the viral replicase that mediates RNA replication and processing []. The specific function of the protein is unknown however the structure has been determined. The protein has a novel alpha/beta fold formed by a 6 stranded beta barrel with an alpha helix covering one end of the barrel and another helix alongside the barrel []. Nsp1 could be involved in the degradation of mRNA. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity, 0016788 hydrolase activity, acting on ester bonds, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2HSX_A 2GDT_A.
Probab=38.56 E-value=29 Score=26.42 Aligned_cols=23 Identities=17% Similarity=0.110 Sum_probs=17.3
Q ss_pred cCcCCCHHHHHHHHHHHHHccHH
Q 023655 239 SCKVNTLAEGVALAREIQLSGKA 261 (279)
Q Consensus 239 ~g~~~~~~eg~~~a~~~l~sG~a 261 (279)
.|-.++.++|++.||+++..|+.
T Consensus 17 rgfgd~vE~Al~eAR~hL~eGt~ 39 (115)
T PF11501_consen 17 RGFGDSVEEALEEARVHLAEGTC 39 (115)
T ss_dssp --S-SSHHHHHHHHHHHHHHT-E
T ss_pred hccchHHHHHHHHHHHHHhcCce
Confidence 35567999999999999999973
No 56
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=37.63 E-value=50 Score=25.04 Aligned_cols=30 Identities=20% Similarity=0.219 Sum_probs=23.6
Q ss_pred echhhHHHHHHHHHHcCCceEEEEec-CCcc
Q 023655 134 YNENLVLKMANALQRFGLKRALVVHS-EGLD 163 (279)
Q Consensus 134 ~h~~~~~~~a~~~~~lg~~~~lvv~G-eG~d 163 (279)
.++++.+.+.+.++..|...+.|++| +|.-
T Consensus 17 ~g~~l~~~ll~~~~~~gi~GaTV~rgi~G~G 47 (101)
T PF02641_consen 17 GGKPLYEWLLERAREAGIAGATVFRGIEGFG 47 (101)
T ss_dssp TTEEHHHHHHHHHHHTT-SEEEEEE-SEEEE
T ss_pred CceEHHHHHHHHHHHCCCCeEEEEcceeeeC
Confidence 46778888899999999999999999 8854
No 57
>PRK04531 acetylglutamate kinase; Provisional
Probab=37.04 E-value=1.2e+02 Score=29.21 Aligned_cols=98 Identities=12% Similarity=0.187 Sum_probs=55.1
Q ss_pred HHcCCC-cEEeeCCCCCCCcCcHHHHHHHcCCCCC------CCHHHHHHHHH----hcCeEEEeCCccChhhhchHH-HH
Q 023655 38 AAACGA-KVAKQGSRSSSSACGSADVLEALGVVID------LDPEGVRRCVD----EAGIGFMMSTKYHPAMKFVRP-VR 105 (279)
Q Consensus 38 lA~~G~-~V~kHG~~~~~~~~Gs~dvLe~LGi~~~------~~~~~~~~~l~----~~g~~fl~~~~~~Pal~~l~~-lR 105 (279)
|.+.|+ +|+.||++. -..+.|+.+|++.. .+.+++-+... +.+. .|.. +|
T Consensus 62 L~~~G~~~VlVHGggp-----qI~~~l~~~gie~~~v~G~RVTd~~tl~vv~~~l~~vn~-------------~lv~~I~ 123 (398)
T PRK04531 62 LQEVGLTPIVVHGAGP-----QLDAELDAAGIEKETVNGLRVTSPEALAIVRKVFQRSNL-------------DLVEAVE 123 (398)
T ss_pred HHHCCCcEEEEECCCH-----HHHHHHHHcCCCcEEECCEecCCHHHHHHHHHHHHHHHH-------------HHHHHHH
Confidence 455676 788999954 24588888888653 12222222222 1111 1111 55
Q ss_pred hhhCCCChhHhhhhccCCCC--CCceEEeeechhhHHHHHHHHHHcCCceEEEEec-CC
Q 023655 106 KKLKVKTVFNILGPMLNPAC--VPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EG 161 (279)
Q Consensus 106 ~~lg~Rt~~ntl~pLlNP~~--~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~lvv~G-eG 161 (279)
+.|.-.-+ |++.|.. +.-+ ++.=.-.....+++..++.++.+.+.. +|
T Consensus 124 ~~L~~g~I-----PVlsplg~~~~G~---~~NvnaD~vA~~LA~aL~a~KLIfltdv~G 174 (398)
T PRK04531 124 SSLRAGSI-----PVIASLGETPSGQ---ILNINADVAANELVSALQPYKIIFLTGTGG 174 (398)
T ss_pred HHHHCCCE-----EEEeCcEECCCCc---EEEECHHHHHHHHHHHcCCCEEEEEECCCC
Confidence 55544444 8888864 2222 233344556677788888877777776 56
No 58
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=36.44 E-value=1e+02 Score=28.32 Aligned_cols=109 Identities=11% Similarity=0.067 Sum_probs=66.5
Q ss_pred HHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCCCHHHHHHHHH---hc--CeE----EE--eCCccChhhhchHH
Q 023655 35 SILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVD---EA--GIG----FM--MSTKYHPAMKFVRP 103 (279)
Q Consensus 35 A~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~~~~~~~~~l~---~~--g~~----fl--~~~~~~Pal~~l~~ 103 (279)
.-.+.++|..++.|.-. ++..+++.+. ...+.++..+.++ +. |+. +| +-+..---...+..
T Consensus 159 l~~l~~aG~dv~~hnlE------t~~~l~~~vr--r~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGlGETeee~~etl~~ 230 (302)
T TIGR00510 159 LDILLDAPPDVYNHNLE------TVERLTPFVR--PGATYRWSLKLLERAKEYLPNLPTKSGIMVGLGETNEEIKQTLKD 230 (302)
T ss_pred HHHHHHcCchhhccccc------chHHHHHHhC--CCCCHHHHHHHHHHHHHhCCCCeecceEEEECCCCHHHHHHHHHH
Confidence 34455566666666543 2234555553 2344554333332 32 222 11 23444444444555
Q ss_pred HHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCceE
Q 023655 104 VRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRA 154 (279)
Q Consensus 104 lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~ 154 (279)
+| ++|+. .=++++-+.|......|.-+.+|+-.+.+.+.+..+|++.+
T Consensus 231 Lr-elg~d--~v~igqYl~p~~~~~~v~~~~~p~~f~~~~~~a~~~gf~~v 278 (302)
T TIGR00510 231 LR-DHGVT--MVTLGQYLRPSRRHLPVKRYVSPEEFDYYRSVALEMGFLHA 278 (302)
T ss_pred HH-hcCCC--EEEeecccCCCCCCCccccCCCHHHHHHHHHHHHHcCChhe
Confidence 54 45653 34678899998888999999999999999999999999644
No 59
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=36.17 E-value=27 Score=31.91 Aligned_cols=35 Identities=31% Similarity=0.495 Sum_probs=27.7
Q ss_pred eeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCC
Q 023655 16 DIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRS 52 (279)
Q Consensus 16 D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~ 52 (279)
=++|-||.|+.| ++.-.|..+|..|.||+.-..+.
T Consensus 4 av~gKGGvGKTT--~a~nLA~~La~~g~rVLlID~Dp 38 (296)
T TIGR02016 4 AIYGKGGSGKSF--TTTNLSHMMAEMGKRVLQLGCDP 38 (296)
T ss_pred EEECCCCCCHHH--HHHHHHHHHHHCCCeEEEEEecC
Confidence 356899999986 56667888889999999866544
No 60
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=36.13 E-value=21 Score=32.37 Aligned_cols=36 Identities=33% Similarity=0.474 Sum_probs=27.0
Q ss_pred ceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCC
Q 023655 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRS 52 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~ 52 (279)
|=+.|-||-|++| ++.=.+..+|..|.+|+.+|-+.
T Consensus 3 IAiYGKGGIGKST--~~~Nlsaala~~G~kVl~iGCDP 38 (273)
T PF00142_consen 3 IAIYGKGGIGKST--TASNLSAALAEMGKKVLQIGCDP 38 (273)
T ss_dssp EEEEESTTSSHHH--HHHHHHHHHHHTT--EEEEEESS
T ss_pred EEEEcCCCcccCh--hhhHHHHHHHhccceeeEecccC
Confidence 4478999999985 45556778899999999999765
No 61
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=36.12 E-value=26 Score=31.10 Aligned_cols=75 Identities=24% Similarity=0.280 Sum_probs=41.5
Q ss_pred ceeecCCCCCCCcccchHHHHHHHHcCCCcEEee-----CCCCCC----CcCcHHHHHHHcCC-CCCCCHHHHHHHHHhc
Q 023655 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQ-----GSRSSS----SACGSADVLEALGV-VIDLDPEGVRRCVDEA 84 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kH-----G~~~~~----~~~Gs~dvLe~LGi-~~~~~~~~~~~~l~~~ 84 (279)
|=+++-||.|+.| ++.-.|-.||..|.+|+.- ||-... ...+..|+|..... .-+.+++++... ...
T Consensus 5 Iav~~KGGVGKTT--~~~nLA~~la~~G~kVLliD~Dpq~~~t~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~-~~~ 81 (270)
T PRK13185 5 LAVYGKGGIGKST--TSSNLSAAFAKLGKKVLQIGCDPKHDSTFTLTGKLVPTVIDILEEVDFHSEELRPEDFVYE-GYN 81 (270)
T ss_pred EEEECCCCCCHHH--HHHHHHHHHHHCCCeEEEEeccCCcchhhhhcCCCCCcHHHHHHhccccccCCCHHHheee-CCC
Confidence 3356889999986 3445577888999999864 332211 12344566643221 112334443211 125
Q ss_pred CeEEEeCC
Q 023655 85 GIGFMMST 92 (279)
Q Consensus 85 g~~fl~~~ 92 (279)
|+-++++.
T Consensus 82 ~l~~ip~~ 89 (270)
T PRK13185 82 GVDCVEAG 89 (270)
T ss_pred CcEEEECC
Confidence 78888663
No 62
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=35.58 E-value=28 Score=31.70 Aligned_cols=34 Identities=38% Similarity=0.482 Sum_probs=25.7
Q ss_pred eeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCC
Q 023655 16 DIVGTGGDGANTVNISTGASILAAACGAKVAKQGSR 51 (279)
Q Consensus 16 D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~ 51 (279)
=++|=||.|+.| .+.-.|..||..|.+|+.-..+
T Consensus 4 a~~gKGGVGKTT--ta~nLA~~La~~G~rVLlID~D 37 (290)
T CHL00072 4 AVYGKGGIGKST--TSCNISIALARRGKKVLQIGCD 37 (290)
T ss_pred EEECCCCCcHHH--HHHHHHHHHHHCCCeEEEEecc
Confidence 368889999985 3444577789999999975443
No 63
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=35.38 E-value=97 Score=27.68 Aligned_cols=73 Identities=10% Similarity=0.114 Sum_probs=42.4
Q ss_pred HHHHHHHHhcCeEEEeCCc------cChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHH
Q 023655 75 EGVRRCVDEAGIGFMMSTK------YHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQR 148 (279)
Q Consensus 75 ~~~~~~l~~~g~~fl~~~~------~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~ 148 (279)
+++.+.++..+..|+..+. ....+.....++++.|++++.|+..+=.|. ..+ +.....+..
T Consensus 18 ~~~~~~~~~~~~d~v~Vt~~~~g~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~------------~~l-~~~L~~~~~ 84 (274)
T cd00537 18 EAAADLLGALDPDFVSVTDGAGGSTRDMTLLAAARILQEGGIEPIPHLTCRDRNR------------IEL-QSILLGAHA 84 (274)
T ss_pred HHHHHHhhcCCCCEEEeCCCCCCchhhhHHHHHHHHHHhcCCCeeeecccCCCCH------------HHH-HHHHHHHHH
Confidence 4455556554455554432 222334455677777888887774443332 233 333444567
Q ss_pred cCCceEEEEecC
Q 023655 149 FGLKRALVVHSE 160 (279)
Q Consensus 149 lg~~~~lvv~Ge 160 (279)
+|+++.++++||
T Consensus 85 ~Gi~~iL~l~GD 96 (274)
T cd00537 85 LGIRNILALRGD 96 (274)
T ss_pred CCCCeEEEeCCC
Confidence 799999999984
No 64
>PRK13236 nitrogenase reductase; Reviewed
Probab=35.32 E-value=28 Score=31.69 Aligned_cols=76 Identities=21% Similarity=0.258 Sum_probs=43.7
Q ss_pred cceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCC----------CcCcHHHHHHHcCCCCCCCHHHHHHHHHh
Q 023655 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSS----------SACGSADVLEALGVVIDLDPEGVRRCVDE 83 (279)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~----------~~~Gs~dvLe~LGi~~~~~~~~~~~~l~~ 83 (279)
.+-+.|=||.|+.| ++.-.|..||..|.+|+.-..+... ++....|++..-+.--..+.+++.. -..
T Consensus 8 ~~~~~GKGGVGKTt--~a~NLA~~La~~G~rVLliD~D~q~~~~~~l~~~~~~~tl~d~~~~~~~~~~~~l~~~i~-~~~ 84 (296)
T PRK13236 8 QIAFYGKGGIGKST--TSQNTLAAMAEMGQRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELHEVML-TGF 84 (296)
T ss_pred EEEEECCCcCCHHH--HHHHHHHHHHHCCCcEEEEEccCCCCccchhccCCCCCCHHHHHHhcCCccCCCHHHhhe-eCC
Confidence 45568999999985 3445577789999999985333221 1123445543211111234455432 113
Q ss_pred cCeEEEeCC
Q 023655 84 AGIGFMMST 92 (279)
Q Consensus 84 ~g~~fl~~~ 92 (279)
.|+-++++.
T Consensus 85 ~gv~llpa~ 93 (296)
T PRK13236 85 RGVKCVESG 93 (296)
T ss_pred CCeEEEECC
Confidence 588888864
No 65
>PF08844 DUF1815: Domain of unknown function (DUF1815); InterPro: IPR014943 This entry is about 100 amino acids in length and is functionally uncharacterised.
Probab=35.27 E-value=1.9e+02 Score=21.95 Aligned_cols=48 Identities=27% Similarity=0.429 Sum_probs=33.7
Q ss_pred HHHHHHHHcCCceEEEEe-cCCccccccCCCeeEEEEeCCeEEEEEeCCCCCCCC
Q 023655 141 KMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIP 194 (279)
Q Consensus 141 ~~a~~~~~lg~~~~lvv~-GeG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~ 194 (279)
-++..+++.|+ -+.+.. |+|.| -++.+.+..+.++...+|.+ .|||+.
T Consensus 21 ALa~~Le~rG~-~AsCYtC~dG~~---~~~ASFmv~lg~~HliRFLV--Sd~GIs 69 (105)
T PF08844_consen 21 ALAIVLERRGY-LASCYTCGDGRD---MNSASFMVSLGDNHLIRFLV--SDYGIS 69 (105)
T ss_pred HHHHHHHhCCc-eeEEEecCCCCC---CCceeEEEEcCCCcEEEEEE--ecCCee
Confidence 35667788888 566665 47654 35667777788888888877 588875
No 66
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=35.24 E-value=46 Score=29.88 Aligned_cols=61 Identities=36% Similarity=0.441 Sum_probs=38.7
Q ss_pred ceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCC--CCc--Cc------HHHHHHHcCCCCCCCHHHH
Q 023655 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSS--SSA--CG------SADVLEALGVVIDLDPEGV 77 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~--~~~--~G------s~dvLe~LGi~~~~~~~~~ 77 (279)
|-+.|-||-|++| +|.=.|-.+|..|.+|+.||=+.- |.+ .| .-|.|...|--.+..++++
T Consensus 4 iAiYGKGGIGKST--ts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledv 74 (278)
T COG1348 4 IAIYGKGGIGKST--TSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDV 74 (278)
T ss_pred EEEecCCCcCcch--hHHHHHHHHHHcCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHh
Confidence 5578999999985 233345567888999999997652 222 12 4666766664233444443
No 67
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=35.14 E-value=26 Score=28.86 Aligned_cols=30 Identities=33% Similarity=0.375 Sum_probs=21.8
Q ss_pred ecCCCCCCCcccchHHHHHHHHcCCCcEEeeC
Q 023655 18 VGTGGDGANTVNISTGASILAAACGAKVAKQG 49 (279)
Q Consensus 18 ~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG 49 (279)
.+-||.|+.| ++...|..+|..|.+|+.-=
T Consensus 5 ~~kGG~GKTt--~a~~la~~la~~g~~VlliD 34 (195)
T PF01656_consen 5 SGKGGVGKTT--IAANLAQALARKGKKVLLID 34 (195)
T ss_dssp ESSTTSSHHH--HHHHHHHHHHHTTS-EEEEE
T ss_pred cCCCCccHHH--HHHHHHhccccccccccccc
Confidence 3458888886 56667888888999999643
No 68
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=34.88 E-value=67 Score=27.04 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=22.6
Q ss_pred Ccceee-cCCCCCCCcccchHHHHHHHHcCCCcEEe
Q 023655 13 DAVDIV-GTGGDGANTVNISTGASILAAACGAKVAK 47 (279)
Q Consensus 13 ~~~D~~-gtggdG~~t~nis~~aA~vlA~~G~~V~k 47 (279)
..|=++ +.||.|+.| ++...|..+|..|.+|+.
T Consensus 18 kvI~v~s~kgG~GKTt--~a~~LA~~la~~G~rVll 51 (204)
T TIGR01007 18 KVLLITSVKPGEGKST--TSANIAVAFAQAGYKTLL 51 (204)
T ss_pred cEEEEecCCCCCCHHH--HHHHHHHHHHhCCCeEEE
Confidence 334455 447777765 455567788899999986
No 69
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=34.83 E-value=2.1e+02 Score=27.62 Aligned_cols=82 Identities=12% Similarity=0.150 Sum_probs=52.9
Q ss_pred CcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHH----cCCCC--CCCHHHHHHHHHh---
Q 023655 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEA----LGVVI--DLDPEGVRRCVDE--- 83 (279)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~----LGi~~--~~~~~~~~~~l~~--- 83 (279)
..+=++|..|.|+.|.-.- .|..+...|.+|..--.+ +.+.|..+-|.. +|+++ ..+++++.+.++.
T Consensus 207 ~ii~lvGptGvGKTTt~ak--LA~~l~~~g~~V~lItaD--tyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVK--LGWQLLKQNRTVGFITTD--TFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred eEEEEECCCCCCHHHHHHH--HHHHHHHcCCeEEEEeCC--ccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 4667899999998642111 122234568888875544 456776555544 67775 4678888777663
Q ss_pred ---cCeEEEeCCccChhh
Q 023655 84 ---AGIGFMMSTKYHPAM 98 (279)
Q Consensus 84 ---~g~~fl~~~~~~Pal 98 (279)
.-+.++..+-.+|..
T Consensus 283 ~~~~D~VLIDTAGr~~~d 300 (407)
T PRK12726 283 VNCVDHILIDTVGRNYLA 300 (407)
T ss_pred cCCCCEEEEECCCCCccC
Confidence 467888888777643
No 70
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=34.65 E-value=1.2e+02 Score=26.86 Aligned_cols=118 Identities=14% Similarity=0.250 Sum_probs=78.9
Q ss_pred CCCCCHHHHHHHHHhcCeEEEeC---C-ccChhhhchHHHHhhhCCCCh-------------hHhhhhccCCCCCCceEE
Q 023655 69 VIDLDPEGVRRCVDEAGIGFMMS---T-KYHPAMKFVRPVRKKLKVKTV-------------FNILGPMLNPACVPFAVV 131 (279)
Q Consensus 69 ~~~~~~~~~~~~l~~~g~~fl~~---~-~~~Pal~~l~~lR~~lg~Rt~-------------~ntl~pLlNP~~~~~~v~ 131 (279)
..+.++.+.+...++.|-+.+.. | -|+-.+..|..+|+..|+.-+ -.+.+-=++-+.+-..+.
T Consensus 88 k~d~~~ae~A~~Yak~GAs~iSVLTe~k~FkGsledL~~irk~~~~k~p~~~lL~KeFivd~~QI~~aR~~GADaVLLIv 167 (289)
T KOG4201|consen 88 KLDANAAEQALAYAKGGASCISVLTEPKWFKGSLEDLVAIRKIAGVKCPPKCLLRKEFIVDPYQIYEARLKGADAVLLIV 167 (289)
T ss_pred ccccCHHHHHHHHHhcCceeeeeecCchhhcccHHHHHHHHHHhcCcCChHhHhHHHHccCHHHHHHHHhcCCceeehHH
Confidence 45567778888889999887755 4 455669999999999998544 233333445555666677
Q ss_pred eeechhhHHHHHHHHHHcCCceEEEEec-CCccccccCCCeeEEEEeCCeEEEEEeC
Q 023655 132 GVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFD 187 (279)
Q Consensus 132 Gv~h~~~~~~~a~~~~~lg~~~~lvv~G-eG~dE~s~~~~t~v~~~~~g~i~~~~~~ 187 (279)
.+-+......+-...+.||...-+=|+. +-++-.--. ..++..+.|.....|+++
T Consensus 168 amLs~~~lk~l~k~~K~L~me~LVEVn~~eEm~ralei-GakvvGvNNRnL~sFeVD 223 (289)
T KOG4201|consen 168 AMLSDLLLKELYKISKDLGMEPLVEVNDEEEMQRALEI-GAKVVGVNNRNLHSFEVD 223 (289)
T ss_pred HHcChHHHHHHHHHHHHcCCcceeeeccHHHHHHHHHh-CcEEEeecCCccceeeec
Confidence 7888888888889999999865555555 322211111 345667777666667664
No 71
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=34.19 E-value=97 Score=28.39 Aligned_cols=46 Identities=7% Similarity=0.197 Sum_probs=29.5
Q ss_pred HHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCceEEEEecC
Q 023655 102 RPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSE 160 (279)
Q Consensus 102 ~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~lvv~Ge 160 (279)
..++++.|++++.|+-.+ +. ++.-...+..-+..+|.++.++++||
T Consensus 75 ~~i~~~~g~~~i~Hltcr------------~~-n~~~l~~~L~~~~~~GI~niLaLrGD 120 (296)
T PRK09432 75 KGIKKRTGLEAAPHLTCI------------DA-TPDELRTIAKDYWNNGIRHIVALRGD 120 (296)
T ss_pred HHHHHHhCCCeeeecccC------------CC-CHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 456677888888777443 32 22333333444578899999999984
No 72
>PF14207 DpnD-PcfM: DpnD/PcfM-like protein
Probab=33.88 E-value=44 Score=22.05 Aligned_cols=19 Identities=11% Similarity=0.158 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHHHHHccH
Q 023655 242 VNTLAEGVALAREIQLSGK 260 (279)
Q Consensus 242 ~~~~~eg~~~a~~~l~sG~ 260 (279)
+.|.++|++++++.|.++.
T Consensus 18 A~s~eeA~~~v~~~y~~~e 36 (48)
T PF14207_consen 18 AESEEEAIEKVRDAYRNEE 36 (48)
T ss_pred eCCHHHHHHHHHHHHhCCC
Confidence 5789999999999998875
No 73
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=33.21 E-value=43 Score=28.48 Aligned_cols=26 Identities=38% Similarity=0.519 Sum_probs=19.2
Q ss_pred ceeecCCCCCCCcccchHHHHHHHHcCCCcEE
Q 023655 15 VDIVGTGGDGANTVNISTGASILAAACGAKVA 46 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~ 46 (279)
|-|+||||.|+ ||.+-++- ..|+++.
T Consensus 3 I~ITGTPGvGK-----TT~~~~L~-~lg~~~i 28 (180)
T COG1936 3 IAITGTPGVGK-----TTVCKLLR-ELGYKVI 28 (180)
T ss_pred EEEeCCCCCch-----HHHHHHHH-HhCCcee
Confidence 55899999999 44444444 8899887
No 74
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=32.98 E-value=31 Score=26.17 Aligned_cols=25 Identities=44% Similarity=0.429 Sum_probs=20.6
Q ss_pred eecCCCCCCCcccchHHHHHHHHcCCCcEE
Q 023655 17 IVGTGGDGANTVNISTGASILAAACGAKVA 46 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~ 46 (279)
++|++|.|+ ||++..+....|++++
T Consensus 4 I~G~~gsGK-----ST~a~~La~~~~~~~i 28 (121)
T PF13207_consen 4 ISGPPGSGK-----STLAKELAERLGFPVI 28 (121)
T ss_dssp EEESTTSSH-----HHHHHHHHHHHTCEEE
T ss_pred EECCCCCCH-----HHHHHHHHHHHCCeEE
Confidence 789999998 7777877777788876
No 75
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=32.94 E-value=1.4e+02 Score=28.24 Aligned_cols=94 Identities=19% Similarity=0.277 Sum_probs=71.6
Q ss_pred HHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCCCHH-HHHHHHHhcCeEEEeC-CccChhhhchHHHHhhhCCCCh
Q 023655 36 ILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPE-GVRRCVDEAGIGFMMS-TKYHPAMKFVRPVRKKLKVKTV 113 (279)
Q Consensus 36 ~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~~~~-~~~~~l~~~g~~fl~~-~~~~Pal~~l~~lR~~lg~Rt~ 113 (279)
-+++.|++-+.-|=- .-..|.-=.|-.+|+++-++.+ ..-+.|.+.|+.+++. ..+..+. +...|++|..
T Consensus 261 ~lL~~cDl~if~~~R---QQgiGnI~lLl~~G~~v~L~~~np~~~~l~~~~ipVlf~~d~L~~~~--v~ea~rql~~--- 332 (360)
T PF07429_consen 261 ALLSRCDLGIFNHNR---QQGIGNICLLLQLGKKVFLSRDNPFWQDLKEQGIPVLFYGDELDEAL--VREAQRQLAN--- 332 (360)
T ss_pred HHHHhCCEEEEeech---hhhHhHHHHHHHcCCeEEEecCChHHHHHHhCCCeEEeccccCCHHH--HHHHHHHHhh---
Confidence 468888888887632 2346788888889999875543 6788899999988888 7777765 8888888864
Q ss_pred hHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHc
Q 023655 114 FNILGPMLNPACVPFAVVGVYNENLVLKMANALQRF 149 (279)
Q Consensus 114 ~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~l 149 (279)
...+-+.+|.|.|.+.-.+++...
T Consensus 333 ------------~dk~~iaFf~pny~~~w~~~l~~~ 356 (360)
T PF07429_consen 333 ------------VDKQQIAFFAPNYLQGWRQALRLA 356 (360)
T ss_pred ------------CcccceeeeCCchHHHHHHHHHHH
Confidence 234556899999999988888643
No 76
>PLN02645 phosphoglycolate phosphatase
Probab=32.80 E-value=67 Score=29.38 Aligned_cols=72 Identities=14% Similarity=0.105 Sum_probs=49.2
Q ss_pred cceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCC-----CHHHHHHHHHhcC
Q 023655 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDL-----DPEGVRRCVDEAG 85 (279)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~-----~~~~~~~~l~~~g 85 (279)
++|+-||=++|...++=..-+--.+-..|++++.-.|++..+..-..+-|+.+|+++.. +...+.+.|++.+
T Consensus 32 ~~D~DGtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~ts~~~~~~~l~~~~ 108 (311)
T PLN02645 32 IFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSSSFAAAAYLKSIN 108 (311)
T ss_pred EEeCcCCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEeehHHHHHHHHHhhc
Confidence 58999998888765543333333577789999999998866655567788999997642 2234555666543
No 77
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=32.35 E-value=41 Score=28.14 Aligned_cols=30 Identities=33% Similarity=0.367 Sum_probs=22.4
Q ss_pred ceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeC
Q 023655 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQG 49 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG 49 (279)
|=++||+|.|+ ||++..++...|++-.--|
T Consensus 10 ILvtGTPG~GK-----stl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 10 ILVTGTPGTGK-----STLAERLAEKTGLEYIEIS 39 (176)
T ss_pred EEEeCCCCCCc-----hhHHHHHHHHhCCceEehh
Confidence 33899999999 6677777777787765433
No 78
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=32.31 E-value=35 Score=27.70 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=23.6
Q ss_pred ecCCCCCCCcccchHHHHHHHHcCCCcEEeeCC
Q 023655 18 VGTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (279)
Q Consensus 18 ~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~ 50 (279)
.+.||.|+.| ++...|..++..|.+|+.--.
T Consensus 6 ~~kgG~GKtt--~a~~la~~l~~~g~~vllvD~ 36 (179)
T cd02036 6 SGKGGVGKTT--TTANLGTALAQLGYKVVLIDA 36 (179)
T ss_pred eCCCCCCHHH--HHHHHHHHHHhCCCeEEEEeC
Confidence 4569999986 456667888899999987643
No 79
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=32.21 E-value=93 Score=29.07 Aligned_cols=44 Identities=27% Similarity=0.259 Sum_probs=31.4
Q ss_pred CcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCc
Q 023655 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACG 58 (279)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~G 58 (279)
.+|-++|++|.|+.||=- .....+...|.+|..-..+-.++..|
T Consensus 57 ~~igi~G~~GaGKSTl~~--~l~~~l~~~g~~v~vi~~Dp~s~~~~ 100 (332)
T PRK09435 57 LRIGITGVPGVGKSTFIE--ALGMHLIEQGHKVAVLAVDPSSTRTG 100 (332)
T ss_pred EEEEEECCCCCCHHHHHH--HHHHHHHHCCCeEEEEEeCCCccccc
Confidence 469999999999976322 22334456699999888887766544
No 80
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=31.90 E-value=43 Score=23.13 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=18.9
Q ss_pred HHHHHHHhcCeEEEeCCccChhh
Q 023655 76 GVRRCVDEAGIGFMMSTKYHPAM 98 (279)
Q Consensus 76 ~~~~~l~~~g~~fl~~~~~~Pal 98 (279)
+++..|.+.||-|++.|.-.-+-
T Consensus 14 E~A~~La~~GIRFVpiPv~~dee 36 (61)
T PF07131_consen 14 EMAHSLAHIGIRFVPIPVVTDEE 36 (61)
T ss_pred HHHHHHHHcCceeeccccccHHH
Confidence 56678899999999999876664
No 81
>PRK10853 putative reductase; Provisional
Probab=31.86 E-value=36 Score=26.73 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=39.0
Q ss_pred cCCCCCCCHHHHHHHHHhcCeEEEeCC--ccChhhhchHHHHhhhCCCChhHhhh
Q 023655 66 LGVVIDLDPEGVRRCVDEAGIGFMMST--KYHPAMKFVRPVRKKLKVKTVFNILG 118 (279)
Q Consensus 66 LGi~~~~~~~~~~~~l~~~g~~fl~~~--~~~Pal~~l~~lR~~lg~Rt~~ntl~ 118 (279)
.|++-|.+--++.+.|+++|+.|-+.. .--|.-..|..+=+++|+..++|+=+
T Consensus 5 y~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~~~g~~~l~n~~~ 59 (118)
T PRK10853 5 YGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFIDELGWEALLNTRG 59 (118)
T ss_pred EcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHHHcCHHHHHhcCC
Confidence 377888888999999999999988775 33456666777767788665555533
No 82
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=31.82 E-value=39 Score=31.46 Aligned_cols=46 Identities=30% Similarity=0.426 Sum_probs=32.7
Q ss_pred ceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHH
Q 023655 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEA 65 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~ 65 (279)
+=++|=||.|+.| ++-+.|..+|+.|-+|+.-.. .+..+..|++..
T Consensus 5 v~f~GKGGVGKTT--~aaA~A~~lA~~g~kvLlvSt---DPAhsL~d~f~~ 50 (322)
T COG0003 5 VFFTGKGGVGKTT--IAAATAVKLAESGKKVLLVST---DPAHSLGDVFDL 50 (322)
T ss_pred EEEecCCcccHHH--HHHHHHHHHHHcCCcEEEEEe---CCCCchHhhhcc
Confidence 3368999999987 566678999999988776543 244455666665
No 83
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=31.63 E-value=2.4e+02 Score=28.59 Aligned_cols=39 Identities=13% Similarity=0.127 Sum_probs=26.7
Q ss_pred CcceeecCCCCCCCcccchHHHHHHHHcCCCcE--EeeCCCCC
Q 023655 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKV--AKQGSRSS 53 (279)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V--~kHG~~~~ 53 (279)
+++-+||..+.|+.|+ -.-....|.+.|++| +||...+.
T Consensus 11 ~vi~ivG~s~sGKTTl--ie~li~~L~~~G~rVavIKh~~h~~ 51 (597)
T PRK14491 11 PLLGFCAYSGTGKTTL--LEQLIPELNQRGLRLAVIKHAHHNF 51 (597)
T ss_pred cEEEEEcCCCCCHHHH--HHHHHHHHHhCCceEEEEEcCCcCC
Confidence 5789999999999763 233455566778665 58866553
No 84
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=31.25 E-value=34 Score=30.29 Aligned_cols=30 Identities=33% Similarity=0.479 Sum_probs=22.3
Q ss_pred eecCCCCCCCcccchHHHHHHHHcCCCcEEee
Q 023655 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~kH 48 (279)
+.|=||.|+.| ++.-.|..||..|.+|+.-
T Consensus 5 ~~gKGGVGKTT--~~~nLA~~La~~g~rVLli 34 (268)
T TIGR01281 5 VYGKGGIGKST--TSSNLSVAFAKLGKRVLQI 34 (268)
T ss_pred EEcCCcCcHHH--HHHHHHHHHHhCCCeEEEE
Confidence 55889999985 2334466778999999853
No 85
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=31.16 E-value=2.5e+02 Score=26.92 Aligned_cols=128 Identities=24% Similarity=0.353 Sum_probs=70.1
Q ss_pred eecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCCCHHHHHHHHHhcCeEEEeC--Ccc
Q 023655 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMS--TKY 94 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~~~~~~~~~l~~~g~~fl~~--~~~ 94 (279)
++|.||-|.. .+|.+|++.|+.|. |.+..... ..+.|+.+|+.+... .. .+.+++.-+.+... |.-
T Consensus 4 ~iGiggsGm~------~la~~L~~~G~~v~--~~D~~~~~--~~~~l~~~gi~~~~g-~~-~~~~~~~d~vV~spgi~~~ 71 (448)
T TIGR01082 4 FVGIGGIGMS------GIAEILLNRGYQVS--GSDIAENA--TTKRLEALGIPIYIG-HS-AENLDDADVVVVSAAIKDD 71 (448)
T ss_pred EEEECHHHHH------HHHHHHHHCCCeEE--EECCCcch--HHHHHHHCcCEEeCC-CC-HHHCCCCCEEEECCCCCCC
Confidence 5677765532 35888999999997 45433322 455688899987543 11 22344444443322 444
Q ss_pred ChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechh-hHHHHHHHHHHcCCceEEEEec
Q 023655 95 HPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNEN-LVLKMANALQRFGLKRALVVHS 159 (279)
Q Consensus 95 ~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~-~~~~~a~~~~~lg~~~~lvv~G 159 (279)
+|.+.... ++.+-+.+-...+..++++ .....|+|-.-|. .-.+++.+|+..|.+...++-|
T Consensus 72 ~p~~~~a~--~~~i~v~~~~el~~~~~~~-~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg 134 (448)
T TIGR01082 72 NPEIVEAK--ERGIPVIRRAEMLAELMRF-RHSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGG 134 (448)
T ss_pred CHHHHHHH--HcCCceEeHHHHHHHHHhc-CcEEEEECCCChHHHHHHHHHHHHHcCCCCeEEECc
Confidence 55543332 2223334555566666653 1334455555554 4566777888888643344434
No 86
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=31.00 E-value=31 Score=30.61 Aligned_cols=42 Identities=31% Similarity=0.389 Sum_probs=30.8
Q ss_pred eecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHH
Q 023655 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVL 63 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvL 63 (279)
+.|.||.|+.| ++...|..+|+.|.+|+.-..+- +....|+|
T Consensus 5 ~~gkgG~GKtt--~a~~la~~~a~~g~~vLlvd~D~---~~sl~~~~ 46 (254)
T cd00550 5 FGGKGGVGKTT--ISAATAVRLAEQGKKVLLVSTDP---AHSLSDSF 46 (254)
T ss_pred EECCCCchHHH--HHHHHHHHHHHCCCCceEEeCCC---cccHHHHh
Confidence 57889999986 46677888999999999876543 22445555
No 87
>PF04227 Indigoidine_A: Indigoidine synthase A like protein; InterPro: IPR007342 Members of this entry catalyze the hydrolysis of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil. It is also reported to be involved in the synthesis of indigoidine, which is a blue pigment synthesised by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 1VKM_C.
Probab=30.89 E-value=85 Score=28.85 Aligned_cols=116 Identities=24% Similarity=0.271 Sum_probs=59.4
Q ss_pred ecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCc------HHHHHHH---------cCCCCCCCHHHHHHHHH
Q 023655 18 VGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACG------SADVLEA---------LGVVIDLDPEGVRRCVD 82 (279)
Q Consensus 18 ~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~G------s~dvLe~---------LGi~~~~~~~~~~~~l~ 82 (279)
+..|.+|..| -.+.+++...+|++|+-.|+-+-=.+.+ |+|+-|- -|++.-++.....+.||
T Consensus 89 ~a~~~~GaTT---VsaTm~lA~~aGI~VfaTGGiGGVHrga~~t~DiSaDL~eL~rtpv~VV~aG~KsILDi~~TLE~LE 165 (293)
T PF04227_consen 89 LAKGLSGATT---VSATMILAHLAGIKVFATGGIGGVHRGAEETFDISADLTELARTPVAVVCAGAKSILDIPKTLEYLE 165 (293)
T ss_dssp HHHT--EEE----HHHHHHHHHHTT--EEE-S-B--B-TT---SS-B-HHHHHHTTS-EEEEESBB-TTS-HHHHHHHHH
T ss_pred HhCCCccHhH---HHHHHHHHHHcCCCEEEeCCcccCCCCCcCcchhhhHHHHHhcCCceEEEccCcchhchHHHHHHhh
Confidence 4456677655 3345677778899999998855222221 7887774 25566688899999999
Q ss_pred hcCeEEEeC-CccChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCceEEEEe
Q 023655 83 EAGIGFMMS-TKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (279)
Q Consensus 83 ~~g~~fl~~-~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~lvv~ 158 (279)
.+|+..+.- ...+|+++. +.-|++.. + -+.+++-...+..+-..+|.+.+++|-
T Consensus 166 T~GV~Vvgy~t~~fPaFy~-----~~Sg~~~~--------------~---~~d~~~e~A~~~~~~~~lgl~~g~lva 220 (293)
T PF04227_consen 166 TQGVPVVGYGTDEFPAFYT-----RSSGFKSP--------------Y---RVDSPEEAARIIRAHWQLGLPSGVLVA 220 (293)
T ss_dssp HTT--EEEES-SB--BTTB-----S--S-B--------------------EE-SHHHHHHHHHHHHHTT--SEEEEE
T ss_pred cCCeEEEEecCCCCCeeec-----cCCCCCCC--------------c---ccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 999987744 678888743 22233222 1 345556666666666778887777755
No 88
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=30.63 E-value=1.1e+02 Score=28.13 Aligned_cols=74 Identities=15% Similarity=0.167 Sum_probs=49.2
Q ss_pred HHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCCCHHHHHHHH--HhcCeEEEeCCccChh--hhchHHHHhhh
Q 023655 35 SILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCV--DEAGIGFMMSTKYHPA--MKFVRPVRKKL 108 (279)
Q Consensus 35 A~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~~~~~~~~~l--~~~g~~fl~~~~~~Pa--l~~l~~lR~~l 108 (279)
+--.+..|+.|+++|.++++-..|+.--+..=|+.+-.+++++++.- .+..++|+-+-.++.. ..-+..+|..+
T Consensus 107 v~~~~~~G~~iIliG~~gHpEv~Gt~Gq~~~~~~~lve~~~d~~~l~~~~~~~l~~~tQTTls~ddt~~Iv~~l~~r~ 184 (294)
T COG0761 107 VERYAREGYEIILIGHKGHPEVIGTMGQYPEGGVLLVESVEDVANLKVQLPDKLAFVTQTTLSVDDTAEIVAALKERF 184 (294)
T ss_pred HHHHHhCCCEEEEEccCCCCceeeeccccCCCceEEEecHHHHHhcccCCcccEEEEeeeecCHHHHHHHHHHHHHhC
Confidence 55567889999999999998765542211111566667888888874 3448999999777665 22334444433
No 89
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=30.28 E-value=3.6e+02 Score=23.28 Aligned_cols=121 Identities=15% Similarity=0.106 Sum_probs=68.4
Q ss_pred ceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCCCHHHHHHHHHhcCeEEEeCCcc
Q 023655 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKY 94 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~~~~~~~~~l~~~g~~fl~~~~~ 94 (279)
|=+.|..|-|+ ||.+-.+....|+++.-.|.- .....-+...-|++.. +.+.+.+.+++.++.|.....-
T Consensus 5 i~i~G~~GsGK-----st~~~~la~~~~~~~~~~g~~----~r~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 74 (217)
T TIGR00017 5 IAIDGPSGAGK-----STVAKAVAEKLGYAYLDSGAM----YRAIALAALQNRVDLT-SEDALAELISHLDIRFIPTNGE 74 (217)
T ss_pred EEEECCCCCCH-----HHHHHHHHHHhCCceeeCchH----HHHHHHHHHHcCCCCC-CHHHHHHHHHhCCCEEecCCCc
Confidence 44667778787 777788888889887743321 0112223333477774 5677888889999988754310
Q ss_pred ---ChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCceEEEEecC
Q 023655 95 ---HPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSE 160 (279)
Q Consensus 95 ---~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~lvv~Ge 160 (279)
.---+.+ -+++ ||. --.........||...+.+.+..+.+..+..+|+-|.
T Consensus 75 ~~~~l~~~~v---~~~i--r~~----------~v~~~~s~~a~~p~VR~~l~~~qr~~a~~~~~Vi~Gr 128 (217)
T TIGR00017 75 VEVFLNGEDV---SEAI--RTQ----------EVANAASKVAVFPKVREALLKRQQALAKNDGIIADGR 128 (217)
T ss_pred eeEEEcCcch---HHHh--cCH----------HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCEEEEEc
Confidence 0000111 1111 111 1111112245677888888777777765556888884
No 90
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=29.03 E-value=1.3e+02 Score=23.03 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=40.1
Q ss_pred hHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCC-------C---HHHHHHHHHhcCeEEEeC
Q 023655 31 STGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDL-------D---PEGVRRCVDEAGIGFMMS 91 (279)
Q Consensus 31 s~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~-------~---~~~~~~~l~~~g~~fl~~ 91 (279)
....+-.+...|++|. +..|+++.|+..|+++.. + ...+.+.+++..+.|+-.
T Consensus 15 ~~~~a~~l~~~G~~i~--------aT~gTa~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~idlVIn 77 (116)
T cd01423 15 LLPTAQKLSKLGYKLY--------ATEGTADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVIN 77 (116)
T ss_pred HHHHHHHHHHCCCEEE--------EccHHHHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCceEEEE
Confidence 4456777888999998 445799999999996542 1 156888888888888855
No 91
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=28.84 E-value=39 Score=29.99 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=22.2
Q ss_pred eecCCCCCCCcccchHHHHHHHHcCCCcEEee
Q 023655 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~kH 48 (279)
+.+.||.|+.| ++.-.|..+|..|.+|+.-
T Consensus 109 ts~~~g~Gktt--~a~nLA~~la~~g~~VllI 138 (274)
T TIGR03029 109 VSAKSGEGCSY--IAANLAIVFSQLGEKTLLI 138 (274)
T ss_pred ECCCCCCCHHH--HHHHHHHHHHhcCCeEEEE
Confidence 45568889886 3445577789999999865
No 92
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=28.80 E-value=39 Score=30.12 Aligned_cols=32 Identities=34% Similarity=0.383 Sum_probs=24.2
Q ss_pred ceeecCCCCCCCcccchHHHHHHHHcCCCcEEee
Q 023655 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kH 48 (279)
|=++|=||.|+.| .+.-.|..||..|.+|+.-
T Consensus 4 iav~~KGGVGKTT--~~~nLA~~La~~G~rVLlI 35 (274)
T PRK13235 4 VAIYGKGGIGKST--TTQNTVAGLAEMGKKVMVV 35 (274)
T ss_pred EEEeCCCCccHHH--HHHHHHHHHHHCCCcEEEE
Confidence 3356789999985 3444578889999999985
No 93
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=28.79 E-value=46 Score=30.63 Aligned_cols=114 Identities=22% Similarity=0.215 Sum_probs=69.2
Q ss_pred eecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCC---CCCcCcHHHHHHHcCCCCCCCHHHHHHHHHhcCeEEEeC-C
Q 023655 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRS---SSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMS-T 92 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~---~~~~~Gs~dvLe~LGi~~~~~~~~~~~~l~~~g~~fl~~-~ 92 (279)
+.|||+.|.. +...++|.-|.+++--=+++ .+-..|----+..+|+....+.+.. .+++.. -
T Consensus 7 qyGtG~vGv~------air~l~akpe~elvgawv~s~ak~Gkdlgelagl~dlgV~a~~~~~av--------lAtl~~~~ 72 (350)
T COG3804 7 QYGTGSVGVA------AIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLPDLGVIATNSIDAV--------LATLADAV 72 (350)
T ss_pred EeccchHHHH------HHHHHHcCCCCceEEEEecCcccccccHHHhcCCCCceeEeecccccc--------eeccccce
Confidence 6799987764 33667777788887433322 2222332223334777666655554 333333 2
Q ss_pred ccChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCC
Q 023655 93 KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGL 151 (279)
Q Consensus 93 ~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~ 151 (279)
.|.|....+-++|+-|+ .=+|.+.+ .+..|.=+.+.|+..++.-+.+.+.|.
T Consensus 73 ~y~~~~~~~~~y~rlL~--aGiNVv~~-----g~~l~yPw~~~PelaeKpl~lAaraGn 124 (350)
T COG3804 73 IYAPLLPSVDEYARLLR--AGINVVTP-----GPVLQYPWFYPPELAEKPLELAARAGN 124 (350)
T ss_pred eeecccchHHHHHHHHH--cCCceecc-----CccccCCCcCChHHhhchHHHHHhcCC
Confidence 33333334777777665 46777654 122455589999999999999999985
No 94
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=28.70 E-value=1.2e+02 Score=26.48 Aligned_cols=57 Identities=19% Similarity=0.093 Sum_probs=40.7
Q ss_pred CcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCC
Q 023655 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVI 70 (279)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~ 70 (279)
-++|+-||-+++.+.++=..-+---|.+.|+++..-.|... +..-..+.|+.+|++.
T Consensus 11 ~~~D~dG~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~-~~~~~~~~L~~~gl~~ 67 (242)
T TIGR01459 11 FLLDLWGVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPR-NIFSLHKTLKSLGINA 67 (242)
T ss_pred EEEecccccccCCccCccHHHHHHHHHHCCCEEEEEeCCCC-ChHHHHHHHHHCCCCc
Confidence 36899999999888655544455556778999998888432 2222347899999976
No 95
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=28.58 E-value=2.3e+02 Score=25.53 Aligned_cols=67 Identities=27% Similarity=0.395 Sum_probs=37.9
Q ss_pred CcceeecCCCCCCCcccchHHHHHHHHcC-C-CcEEeeCCCCCCCcCcHHHHH----HHcCCCC--CCCHHHHHHHHHh
Q 023655 13 DAVDIVGTGGDGANTVNISTGASILAAAC-G-AKVAKQGSRSSSSACGSADVL----EALGVVI--DLDPEGVRRCVDE 83 (279)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aA~vlA~~-G-~~V~kHG~~~~~~~~Gs~dvL----e~LGi~~--~~~~~~~~~~l~~ 83 (279)
..+=++|.+|.|+.|.-... |..++.. | .+|..--.+ +.+.+..+-| +.+|+++ ..+++++.+.+++
T Consensus 195 ~vi~~vGptGvGKTTt~~kL--a~~~~~~~g~~~V~li~~D--~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~ 269 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKL--AARFVLEHGNKKVALITTD--TYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR 269 (282)
T ss_pred eEEEEECCCCCCHHHHHHHH--HHHHHHHcCCCeEEEEECC--ccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH
Confidence 36779999999996321111 1122222 4 788776554 3445544444 3457775 3566666666664
No 96
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=28.34 E-value=28 Score=26.17 Aligned_cols=51 Identities=24% Similarity=0.207 Sum_probs=37.1
Q ss_pred cCCCcEEeeCCCCCCCcCc--HHHHHHHcCCCCC----CCHHHHHHHHHhcCeEEEe
Q 023655 40 ACGAKVAKQGSRSSSSACG--SADVLEALGVVID----LDPEGVRRCVDEAGIGFMM 90 (279)
Q Consensus 40 ~~G~~V~kHG~~~~~~~~G--s~dvLe~LGi~~~----~~~~~~~~~l~~~g~~fl~ 90 (279)
..|+.+.+|-+++..+... ....|.++|+|+- .+.+.+++.+.+.|+.+++
T Consensus 23 rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~lg~~~~p 79 (89)
T PF08444_consen 23 RMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPFYGHVDEDNEASQRLSKSLGFIFMP 79 (89)
T ss_pred cccccCHhHhcCCHHHHHHHHHHHHHHHCCCCeEeehHhccHHHHHHHHHCCCeecC
Confidence 4577778887777666433 5888999999864 3445777888888887765
No 97
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=28.17 E-value=55 Score=28.01 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=24.9
Q ss_pred cceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCC
Q 023655 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (279)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~ 50 (279)
++=++|++|.|+ ||++..++...|++++..|.
T Consensus 5 ~i~i~G~~G~GK-----st~a~~l~~~~~~~~~~~~D 36 (197)
T PRK12339 5 IHFIGGIPGVGK-----TSISGYIARHRAIDIVLSGD 36 (197)
T ss_pred EEEEECCCCCCH-----HHHHHHHHHhcCCeEEehhH
Confidence 345899999999 77888888888887765554
No 98
>PTZ00413 lipoate synthase; Provisional
Probab=28.03 E-value=3.2e+02 Score=26.30 Aligned_cols=112 Identities=13% Similarity=0.099 Sum_probs=72.4
Q ss_pred HHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCCCHHHHHHHHH---hc---Ce----EEEe--CCccChhhhc
Q 023655 33 GASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVD---EA---GI----GFMM--STKYHPAMKF 100 (279)
Q Consensus 33 ~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~~~~~~~~~l~---~~---g~----~fl~--~~~~~Pal~~ 100 (279)
-+.-.|..+|+-|.-|.-..+.. ++...- +...++++..+.|+ +. |+ .+|. -+..---+.-
T Consensus 243 e~l~~L~eAG~dvynHNLETv~r------Lyp~VR-t~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~ 315 (398)
T PTZ00413 243 KSVEKLANSPLSVYAHNIECVER------ITPYVR-DRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQT 315 (398)
T ss_pred HHHHHHHhcCCCEEecccccCHh------HHHHHc-cCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHH
Confidence 46778888999999998655321 111110 00113333333332 11 32 2232 2666666666
Q ss_pred hHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCceE
Q 023655 101 VRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRA 154 (279)
Q Consensus 101 l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~ 154 (279)
+..+| ++|+..+ ++|-.|.|....+.|.=++||+-.+.+.+.+..+|++.+
T Consensus 316 m~dLr-elGVDiv--tIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v 366 (398)
T PTZ00413 316 LRDLR-TAGVSAV--TLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYC 366 (398)
T ss_pred HHHHH-HcCCcEE--eeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceE
Confidence 67775 5787544 778889999888999999999999999999999999643
No 99
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=27.62 E-value=39 Score=26.92 Aligned_cols=56 Identities=14% Similarity=0.065 Sum_probs=42.7
Q ss_pred cCCCCCCCHHHHHHHHHhcCeEEEeCC--ccChhhhchHHHHhhhCCCChhHhhhhcc
Q 023655 66 LGVVIDLDPEGVRRCVDEAGIGFMMST--KYHPAMKFVRPVRKKLKVKTVFNILGPML 121 (279)
Q Consensus 66 LGi~~~~~~~~~~~~l~~~g~~fl~~~--~~~Pal~~l~~lR~~lg~Rt~~ntl~pLl 121 (279)
.|++-|.+--++.+.|+++|+.|-+.. .--|.-..|..+=+.+|.+.+||+=+...
T Consensus 6 Y~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~~~g~~~lin~~~~~~ 63 (126)
T TIGR01616 6 YEKPGCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFGNKPVGSWFNRAAPRV 63 (126)
T ss_pred EeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHHHcCHHHHHhccchHh
Confidence 377888888999999999999988775 44566667777777788777777766543
No 100
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=27.36 E-value=1.3e+02 Score=26.15 Aligned_cols=84 Identities=11% Similarity=0.178 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHhcCeEEEeCCccChhhhchHHHHhhhCCCChhHhhhhccCC-CC---CCce-EEeeechhhHHHHHHHH
Q 023655 72 LDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP-AC---VPFA-VVGVYNENLVLKMANAL 146 (279)
Q Consensus 72 ~~~~~~~~~l~~~g~~fl~~~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP-~~---~~~~-v~Gv~h~~~~~~~a~~~ 146 (279)
..++.+.. +.+.|+..+.-...--+..+...+|+ .+ ....++++|+..+ .. ..+. ...|.+.+..+.+.+.+
T Consensus 38 ~~~~~i~~-l~~~G~~~fg~~~~~Ea~~k~~~lr~-~~-~~~~~~ig~~q~~~~~~~~~~~~l~~~vds~~~~~~l~~~a 114 (229)
T TIGR00044 38 KPASAIQI-AYDAGQRAFGENYVQELVEKIKLLED-LG-KLEWHFIGPLQSNKDRLVVENFDWVHTIDSLKIAKKLNEQR 114 (229)
T ss_pred CCHHHHHH-HHHcCCccccEEcHHHHHHHHHHhcc-cC-CceEEEECCCcchHHHHHhhhcCEEEEECCHHHHHHHHHHH
Confidence 34666666 66777665555555555555555663 55 5677888887443 21 2334 48899999999999999
Q ss_pred HHcCCceEEEEe
Q 023655 147 QRFGLKRALVVH 158 (279)
Q Consensus 147 ~~lg~~~~lvv~ 158 (279)
...|..--+.++
T Consensus 115 ~~~~~~~~V~l~ 126 (229)
T TIGR00044 115 EKLQPPLNVLLQ 126 (229)
T ss_pred HhcCCCceEEEE
Confidence 888754334444
No 101
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=27.10 E-value=43 Score=28.80 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=27.6
Q ss_pred eecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCC
Q 023655 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRS 52 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~ 52 (279)
+.|.||.|+.| ++...|..+|..|.+|..-..+-
T Consensus 4 ~~g~~g~Gkt~--~~~~la~~~a~~g~~~~l~~~d~ 37 (217)
T cd02035 4 FTGKGGVGKTT--IAAATAVRLAEEGKKVLLVSTDP 37 (217)
T ss_pred EeCCCCchHHH--HHHHHHHHHHHCCCcEEEEECCC
Confidence 57889999987 47777889999999999876543
No 102
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=26.76 E-value=73 Score=29.10 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=24.1
Q ss_pred ecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCC
Q 023655 18 VGTGGDGANTVNISTGASILAAACGAKVAKQGSRSS 53 (279)
Q Consensus 18 ~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~ 53 (279)
+| -|.|...+++-.+..+ -...++|.++||+.+.
T Consensus 180 HG-~y~~~p~Ld~~~L~~I-~~~~~iPLVlHGgSG~ 213 (284)
T PRK12737 180 HG-LYKGEPKLDFERLAEI-REKVSIPLVLHGASGV 213 (284)
T ss_pred cc-ccCCCCcCCHHHHHHH-HHHhCCCEEEeCCCCC
Confidence 44 6666556777766655 5555899999999773
No 103
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=26.46 E-value=97 Score=27.71 Aligned_cols=70 Identities=17% Similarity=-0.029 Sum_probs=47.7
Q ss_pred cceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCC-----CHHHHHHHHHh
Q 023655 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDL-----DPEGVRRCVDE 83 (279)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~-----~~~~~~~~l~~ 83 (279)
++|+-||=++|.+.++=..-+---|-+.|+++..-.|++..++....+.|+.+|+++.. +..-+.+.|++
T Consensus 6 ~~D~DGtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~ts~~~~~~~l~~ 80 (279)
T TIGR01452 6 IFDCDGVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLFSSALCAARLLRQ 80 (279)
T ss_pred EEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEecHHHHHHHHHHh
Confidence 57888888887776554333333566789999988888766666667888999997642 12344556666
No 104
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=26.31 E-value=45 Score=25.42 Aligned_cols=90 Identities=13% Similarity=0.120 Sum_probs=49.2
Q ss_pred CCCCCCCHHHHHHHHHhcCeEEEeCCccC--hhhhchHHHHhhhC--CCChhHhhhhccCCCCCCceEEeeechhhHHHH
Q 023655 67 GVVIDLDPEGVRRCVDEAGIGFMMSTKYH--PAMKFVRPVRKKLK--VKTVFNILGPMLNPACVPFAVVGVYNENLVLKM 142 (279)
Q Consensus 67 Gi~~~~~~~~~~~~l~~~g~~fl~~~~~~--Pal~~l~~lR~~lg--~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~ 142 (279)
|++-|.+-.++.+.|+++|+.|-+-...- |.-..|..+=+.+| ++.++|+=++...-.. ....-.....++.+.|
T Consensus 2 ~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~~~~~~~lin~~~~~~k~l~-~~~~~~~s~~e~i~~l 80 (110)
T PF03960_consen 2 GNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELLSKLGNGPDDLINTRSKTYKELG-KLKKDDLSDEELIELL 80 (110)
T ss_dssp E-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHHHHHTSSGGGGB-TTSHHHHHTT-HHHCTTSBHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHHhcccHHHHhcCccchHhhhh-hhhhhhhhhHHHHHHH
Confidence 45667778899999999999988875544 66777888888888 5666655443332222 1112234445555555
Q ss_pred HHHHHHcCCceEEEEec
Q 023655 143 ANALQRFGLKRALVVHS 159 (279)
Q Consensus 143 a~~~~~lg~~~~lvv~G 159 (279)
.+=-..+. |=+|+.|
T Consensus 81 ~~~p~Lik--RPIi~~~ 95 (110)
T PF03960_consen 81 LENPKLIK--RPIIVDG 95 (110)
T ss_dssp HHSGGGB---SSEEEET
T ss_pred HhChhhee--CCEEEEC
Confidence 54444443 3466655
No 105
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=26.24 E-value=46 Score=29.77 Aligned_cols=32 Identities=31% Similarity=0.382 Sum_probs=22.5
Q ss_pred ceeecCCCCCCCcccchHH-HHHHHHcCCCcEEee
Q 023655 15 VDIVGTGGDGANTVNISTG-ASILAAACGAKVAKQ 48 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~-aA~vlA~~G~~V~kH 48 (279)
|=|||-||.|+.| ++++ +.-+++..|+.|+--
T Consensus 3 IaI~GKGG~GKTt--iaalll~~l~~~~~~~VLvV 35 (255)
T COG3640 3 IAITGKGGVGKTT--IAALLLKRLLSKGGYNVLVV 35 (255)
T ss_pred EEEecCCCccHHH--HHHHHHHHHHhcCCceEEEE
Confidence 4589999999976 4444 455666667888853
No 106
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=26.11 E-value=7.9e+02 Score=25.89 Aligned_cols=86 Identities=22% Similarity=0.265 Sum_probs=55.4
Q ss_pred CcceeecCCCCCCCcccchHHHHHHHH----cCC-CcEEeeCCCCCCCcCcHHHHHH----HcCCCCC--CCHHHHHHHH
Q 023655 13 DAVDIVGTGGDGANTVNISTGASILAA----ACG-AKVAKQGSRSSSSACGSADVLE----ALGVVID--LDPEGVRRCV 81 (279)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aA~vlA----~~G-~~V~kHG~~~~~~~~Gs~dvLe----~LGi~~~--~~~~~~~~~l 81 (279)
.++=++|..|.|+. |.++.+++ ..| .+|..-..+ +.+.|+.+-|. .+|+++. .+++++.+.+
T Consensus 186 ~Vi~lVGpnGvGKT-----TTiaKLA~~~~~~~G~kkV~lit~D--t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al 258 (767)
T PRK14723 186 GVLALVGPTGVGKT-----TTTAKLAARCVAREGADQLALLTTD--SFRIGALEQLRIYGRILGVPVHAVKDAADLRFAL 258 (767)
T ss_pred eEEEEECCCCCcHH-----HHHHHHHhhHHHHcCCCeEEEecCc--ccchHHHHHHHHHHHhCCCCccccCCHHHHHHHH
Confidence 46778999999995 33344433 344 466654433 46777666554 5688764 5777776666
Q ss_pred H---hcCeEEEeCCccChhhhchHHHH
Q 023655 82 D---EAGIGFMMSTKYHPAMKFVRPVR 105 (279)
Q Consensus 82 ~---~~g~~fl~~~~~~Pal~~l~~lR 105 (279)
+ +..+.++..+-.+|....++..-
T Consensus 259 ~~~~~~D~VLIDTAGRs~~d~~l~eel 285 (767)
T PRK14723 259 AALGDKHLVLIDTVGMSQRDRNVSEQI 285 (767)
T ss_pred HHhcCCCEEEEeCCCCCccCHHHHHHH
Confidence 5 45788999988777655554443
No 107
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=25.95 E-value=87 Score=29.37 Aligned_cols=39 Identities=18% Similarity=0.174 Sum_probs=29.0
Q ss_pred chHHHHHHHHcCCCcEEeeCCC--CC--CCc-----CcHHHHHHHcCC
Q 023655 30 ISTGASILAAACGAKVAKQGSR--SS--SSA-----CGSADVLEALGV 68 (279)
Q Consensus 30 is~~aA~vlA~~G~~V~kHG~~--~~--~~~-----~Gs~dvLe~LGi 68 (279)
.-+++|+.|+..|++|...--. .. .++ .++.++|+.||+
T Consensus 13 aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~ 60 (387)
T COG0654 13 AGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGL 60 (387)
T ss_pred HHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCC
Confidence 5678899999999999976554 11 111 248999999998
No 108
>PLN02540 methylenetetrahydrofolate reductase
Probab=25.91 E-value=1.3e+02 Score=30.24 Aligned_cols=70 Identities=10% Similarity=0.119 Sum_probs=44.0
Q ss_pred HHHHHhcCeEEEeCCc------cChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCC
Q 023655 78 RRCVDEAGIGFMMSTK------YHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGL 151 (279)
Q Consensus 78 ~~~l~~~g~~fl~~~~------~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~ 151 (279)
.+.|.+.+-.|+...- -.-.+.-...+++++|++++.|+...=.|. .-.....+-+..+|+
T Consensus 21 ~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~-------------~~L~~~L~~a~~~GI 87 (565)
T PLN02540 21 MDRMVAHGPLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTCTNMPV-------------EKIDHALETIKSNGI 87 (565)
T ss_pred HHHHhccCCCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCH-------------HHHHHHHHHHHHCCC
Confidence 3455666777775421 222444556678889999998874443332 233334444578899
Q ss_pred ceEEEEecC
Q 023655 152 KRALVVHSE 160 (279)
Q Consensus 152 ~~~lvv~Ge 160 (279)
++.++++||
T Consensus 88 rNILALrGD 96 (565)
T PLN02540 88 QNILALRGD 96 (565)
T ss_pred CEEEEECCC
Confidence 999999994
No 109
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=25.79 E-value=1.9e+02 Score=21.44 Aligned_cols=84 Identities=17% Similarity=0.209 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHhcCeEEEeCCccChhhhchHHHHhhhCCCChhHhhhhccCCC--CCCceEEeeechhhHHHHHHHHHH
Q 023655 71 DLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPA--CVPFAVVGVYNENLVLKMANALQR 148 (279)
Q Consensus 71 ~~~~~~~~~~l~~~g~~fl~~~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~--~~~~~v~Gv~h~~~~~~~a~~~~~ 148 (279)
..+++++.+.+++.+..++.... |.-..-..+...+-+ +...+...+++. ..+..++. ++-......+..|+.
T Consensus 6 ~is~~el~~~l~~~~~~ivDvR~--~~e~~~ghi~gA~~i--p~~~l~~~~~~~~~~~~ivv~c-~~g~~s~~a~~~L~~ 80 (108)
T PRK00162 6 CINVEQAHQKLQEGGAVLVDIRD--PQSFAMGHAPGAFHL--TNDSLGAFMRQADFDTPVMVMC-YHGNSSQGAAQYLLQ 80 (108)
T ss_pred ccCHHHHHHHHHcCCCEEEEcCC--HHHHhcCCCCCCeEC--CHHHHHHHHHhcCCCCCEEEEe-CCCCCHHHHHHHHHH
Confidence 36788888888877777777631 111111111111111 111222222222 22333332 233334555667778
Q ss_pred cCCceEEEEec
Q 023655 149 FGLKRALVVHS 159 (279)
Q Consensus 149 lg~~~~lvv~G 159 (279)
.|++++.++.|
T Consensus 81 ~G~~~v~~l~G 91 (108)
T PRK00162 81 QGFDVVYSIDG 91 (108)
T ss_pred CCchheEEecC
Confidence 88877766665
No 110
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=25.17 E-value=84 Score=28.70 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=24.0
Q ss_pred CCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCC
Q 023655 21 GGDGANTVNISTGASILAAACGAKVAKQGSRSSS 54 (279)
Q Consensus 21 ggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~ 54 (279)
-|.|...+++-.+..+ -+..++|.++||+.+.+
T Consensus 182 ~y~~~p~Ld~~~L~~i-~~~~~vPLVlHGgSG~~ 214 (284)
T PRK12857 182 PYKGEPKLDFDRLAKI-KELVNIPIVLHGSSGVP 214 (284)
T ss_pred ccCCCCcCCHHHHHHH-HHHhCCCEEEeCCCCCC
Confidence 5666557787776665 45569999999997644
No 111
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=25.16 E-value=49 Score=25.27 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=39.1
Q ss_pred CCCCCCCHHHHHHHHHhcCeEEEeCC--ccChhhhchHHHHhhhCCCChhHhhhh
Q 023655 67 GVVIDLDPEGVRRCVDEAGIGFMMST--KYHPAMKFVRPVRKKLKVKTVFNILGP 119 (279)
Q Consensus 67 Gi~~~~~~~~~~~~l~~~g~~fl~~~--~~~Pal~~l~~lR~~lg~Rt~~ntl~p 119 (279)
+.+-|.+--.+.+.|+++|+.|-+.. .--|.-..|..+-+.+|++.++|+=++
T Consensus 5 ~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~~g~~~li~~~~~ 59 (105)
T cd03035 5 GIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAKVGWETLLNKRGT 59 (105)
T ss_pred eCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHHhChHHHHccCch
Confidence 55667777789999999998887764 345666777777778887777776443
No 112
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=25.12 E-value=54 Score=32.02 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=28.7
Q ss_pred eecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCC
Q 023655 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSS 54 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~ 54 (279)
++-||-+|+.| .+++.+-+|-++|.++..=||=+.+
T Consensus 113 vaITGTNGKTT--TTsli~~~l~~~G~~~~lgGNIG~p 148 (448)
T COG0771 113 VAITGTNGKTT--TTSLIAHLLKAAGLDALLGGNIGTP 148 (448)
T ss_pred EEEECCCchHH--HHHHHHHHHHhcCCCceeccccCcc
Confidence 45577788875 4778889999999999999996643
No 113
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=24.99 E-value=71 Score=26.98 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=18.7
Q ss_pred ceeecCCCCCCCcccchHHHHHHHHcCCCcEE
Q 023655 15 VDIVGTGGDGANTVNISTGASILAAACGAKVA 46 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~ 46 (279)
|-++|.||.| ...|..+|..|++|.
T Consensus 3 I~ViGlGyvG-------l~~A~~lA~~G~~V~ 27 (185)
T PF03721_consen 3 IAVIGLGYVG-------LPLAAALAEKGHQVI 27 (185)
T ss_dssp EEEE--STTH-------HHHHHHHHHTTSEEE
T ss_pred EEEECCCcch-------HHHHHHHHhCCCEEE
Confidence 5678999955 456999999999998
No 114
>PRK07261 topology modulation protein; Provisional
Probab=24.39 E-value=82 Score=26.03 Aligned_cols=30 Identities=30% Similarity=0.378 Sum_probs=23.1
Q ss_pred ceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeC
Q 023655 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQG 49 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG 49 (279)
|=|+|++|.|+ ||++..+....|+++...+
T Consensus 3 i~i~G~~GsGK-----STla~~l~~~~~~~~i~~D 32 (171)
T PRK07261 3 IAIIGYSGSGK-----STLARKLSQHYNCPVLHLD 32 (171)
T ss_pred EEEEcCCCCCH-----HHHHHHHHHHhCCCeEecC
Confidence 34789999999 7777877777888876543
No 115
>PRK08118 topology modulation protein; Reviewed
Probab=24.19 E-value=66 Score=26.53 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=20.4
Q ss_pred eeecCCCCCCCcccchHHHHHHHHcCCCcEE
Q 023655 16 DIVGTGGDGANTVNISTGASILAAACGAKVA 46 (279)
Q Consensus 16 D~~gtggdG~~t~nis~~aA~vlA~~G~~V~ 46 (279)
=|+|++|.|+ ||++-.+....|+++.
T Consensus 5 ~I~G~~GsGK-----STlak~L~~~l~~~~~ 30 (167)
T PRK08118 5 ILIGSGGSGK-----STLARQLGEKLNIPVH 30 (167)
T ss_pred EEECCCCCCH-----HHHHHHHHHHhCCCce
Confidence 3788888888 6777777778888866
No 116
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=24.10 E-value=55 Score=24.24 Aligned_cols=50 Identities=14% Similarity=0.274 Sum_probs=33.6
Q ss_pred HHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCC----CC--CCH---H---HHHHHHHhcCeEEEeC
Q 023655 34 ASILAAACGAKVAKQGSRSSSSACGSADVLEALGVV----ID--LDP---E---GVRRCVDEAGIGFMMS 91 (279)
Q Consensus 34 aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~----~~--~~~---~---~~~~~l~~~g~~fl~~ 91 (279)
.|--++..|+++. ...|+++.|+.-|++ +. ..+ + ++.+.+++..|.++--
T Consensus 5 ~a~~l~~lG~~i~--------AT~gTa~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn 66 (95)
T PF02142_consen 5 LAKRLAELGFEIY--------ATEGTAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVIN 66 (95)
T ss_dssp HHHHHHHTTSEEE--------EEHHHHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHCCCEEE--------EChHHHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEE
Confidence 3566778888887 455799999999998 33 222 1 2888999988886643
No 117
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=24.07 E-value=2.2e+02 Score=20.63 Aligned_cols=48 Identities=17% Similarity=0.285 Sum_probs=29.5
Q ss_pred HHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCC-C------CHHHHHHHHHhcCeEEEe
Q 023655 35 SILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID-L------DPEGVRRCVDEAGIGFMM 90 (279)
Q Consensus 35 A~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~-~------~~~~~~~~l~~~g~~fl~ 90 (279)
+--+++.|+++. ...|+++.|+.-|+++. . ....+.+.+++..+.++-
T Consensus 6 ~~~l~~lG~~i~--------AT~gTa~~L~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VI 60 (90)
T smart00851 6 AKRLAELGFELV--------ATGGTAKFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVI 60 (90)
T ss_pred HHHHHHCCCEEE--------EccHHHHHHHHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEE
Confidence 445667777776 33467788888887753 1 113466667777766653
No 118
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=23.95 E-value=3.7e+02 Score=24.34 Aligned_cols=128 Identities=19% Similarity=0.088 Sum_probs=86.8
Q ss_pred CcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHH-cCCCCC-----CCHHHHHHHHHhcC-
Q 023655 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEA-LGVVID-----LDPEGVRRCVDEAG- 85 (279)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~-LGi~~~-----~~~~~~~~~l~~~g- 85 (279)
-++|+-||=++|...++=..-+---|.+.|.|++.--|.+-.++.-...-|+. +|++.. .|-.-..+.+.+..
T Consensus 11 ~l~DlDGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~~ 90 (269)
T COG0647 11 FLFDLDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSGDATADYLAKQKP 90 (269)
T ss_pred EEEcCcCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHHHHHHHHHHhhCC
Confidence 46899999999999877666666667799999999999887666655666666 566443 44455666777653
Q ss_pred --eEEEeCCccChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCC
Q 023655 86 --IGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGL 151 (279)
Q Consensus 86 --~~fl~~~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~ 151 (279)
=+|+.-+ ..+...=+.+|+.... --||.++.+.++|.-...-.+.+++++..+..
T Consensus 91 ~~kv~viG~------~~l~~~l~~~G~~~~~-----~~~~~~~d~Vv~g~d~~~~~e~l~~a~~~i~~ 147 (269)
T COG0647 91 GKKVYVIGE------EGLKEELEGAGFELVD-----EEEPARVDAVVVGLDRTLTYEKLAEALLAIAA 147 (269)
T ss_pred CCEEEEECC------cchHHHHHhCCcEEec-----cCCCCcccEEEEecCCCCCHHHHHHHHHHHHc
Confidence 5665552 1222222456653332 22444467889999988888889999987743
No 119
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=23.84 E-value=68 Score=24.94 Aligned_cols=28 Identities=21% Similarity=0.471 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHhcCeEEEeCCccChhhh
Q 023655 72 LDPEGVRRCVDEAGIGFMMSTKYHPAMK 99 (279)
Q Consensus 72 ~~~~~~~~~l~~~g~~fl~~~~~~Pal~ 99 (279)
.+.+.....|++.||.|++.+.+.|.-.
T Consensus 31 ~~k~~l~~~l~~~gi~Y~~~~~Lg~~~~ 58 (122)
T PF04343_consen 31 FNKEDLASFLEEAGIEYVWLPELGPSRE 58 (122)
T ss_pred CCHHHHHHHHHHCCceEeechhhcCccc
Confidence 4678889999999999999999988753
No 120
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=23.84 E-value=1.2e+02 Score=26.34 Aligned_cols=52 Identities=12% Similarity=0.116 Sum_probs=37.2
Q ss_pred HHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCC--CCHHHHHHHHHhcC
Q 023655 33 GASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID--LDPEGVRRCVDEAG 85 (279)
Q Consensus 33 ~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~--~~~~~~~~~l~~~g 85 (279)
.++-.+-++|..|+.|.---. -..|..+.++..|+++. .+..++.+.|.+.|
T Consensus 136 ~a~~~L~~~G~~vv~v~vlvd-r~~~~~~~l~~~gi~v~sl~~~~~l~~~l~~~~ 189 (206)
T PRK13809 136 ETAVALEEEGLVVREALVFLD-RQKGACQPLGPQGIKLSSVFTVPDLIKSLISYG 189 (206)
T ss_pred HHHHHHHHCCCEEEEEEEEEE-CcccHHHHHHhcCCCEEEEEEHHHHHHHHHHcC
Confidence 355677788999888775332 11356777888899875 78888888888754
No 121
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=23.83 E-value=1.4e+02 Score=27.22 Aligned_cols=93 Identities=17% Similarity=0.170 Sum_probs=49.4
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHhcCeEEEeC-Cc-----------------cChhhhchHHHHhhhCCCChhHhhhhcc
Q 023655 60 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMS-TK-----------------YHPAMKFVRPVRKKLKVKTVFNILGPML 121 (279)
Q Consensus 60 ~dvLe~LGi~~~~~~~~~~~~l~~~g~~fl~~-~~-----------------~~Pal~~l~~lR~~lg~Rt~~ntl~pLl 121 (279)
.+.|+.+...=-.+..++.+...++||.|+=. +. +.+.++.+..+-++.|+|..||-
T Consensus 33 ~~kl~~l~~~Nl~~l~~~L~~n~~~~I~~yRisS~liP~ashp~~~~~~~~~~~~~l~~iG~~~~~~~iRls~HP----- 107 (275)
T PF03851_consen 33 LEKLKELARQNLEDLLRILEYNIAHGIRFYRISSDLIPLASHPEVGWDWEEEFAEELAEIGDLAKENGIRLSMHP----- 107 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT--EEE--TTSSTTTTSTT--S-HHHHHHHHHHHHHHHHHHTT-EEEE-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCEEecCcccCCCCCCcccccchHHHHHHHHHHHHHHHHHcCCeEEecC-----
Confidence 35566553211123455666667899999855 32 33345556666777888877664
Q ss_pred CCCCCCceEEeeechh-------hHHHHHHHHHHcCCc----eEEEEecCC
Q 023655 122 NPACVPFAVVGVYNEN-------LVLKMANALQRFGLK----RALVVHSEG 161 (279)
Q Consensus 122 NP~~~~~~v~Gv~h~~-------~~~~~a~~~~~lg~~----~~lvv~GeG 161 (279)
..+.+++-.+|+ .++.|++++..+|.. ..+++|+.|
T Consensus 108 ----~qf~vLnSp~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~GG 154 (275)
T PF03851_consen 108 ----DQFTVLNSPREEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVGG 154 (275)
T ss_dssp -----TT--TT-SSHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE---
T ss_pred ----CcceeCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeCC
Confidence 345555555554 356788999999975 469999644
No 122
>PRK10037 cell division protein; Provisional
Probab=23.42 E-value=47 Score=29.17 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=20.0
Q ss_pred CCCCCCcccchHHHHHHHHcCCCcEEee
Q 023655 21 GGDGANTVNISTGASILAAACGAKVAKQ 48 (279)
Q Consensus 21 ggdG~~t~nis~~aA~vlA~~G~~V~kH 48 (279)
||.|+.| ++.-.|..||..|.+|+.-
T Consensus 11 GGvGKTT--~a~nLA~~La~~G~rVLlI 36 (250)
T PRK10037 11 GGVGTTS--ITAALAWSLQMLGENVLVI 36 (250)
T ss_pred CCccHHH--HHHHHHHHHHhcCCcEEEE
Confidence 8999986 3444567788999999975
No 123
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=23.37 E-value=2.1e+02 Score=25.12 Aligned_cols=91 Identities=16% Similarity=0.245 Sum_probs=54.0
Q ss_pred cCCCCCCCHHHHHHHHHhcCeEEEeC--CccChhhh-chHH------HHhhhCCCChhHhhhhccCCCCCCceEEeeech
Q 023655 66 LGVVIDLDPEGVRRCVDEAGIGFMMS--TKYHPAMK-FVRP------VRKKLKVKTVFNILGPMLNPACVPFAVVGVYNE 136 (279)
Q Consensus 66 LGi~~~~~~~~~~~~l~~~g~~fl~~--~~~~Pal~-~l~~------lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~ 136 (279)
+|+|-..+..+..+.|++.|.-++.. |.--|-+. ...+ ++.-..++-.+..+..+-+-...+..++++++|
T Consensus 8 ~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~ 87 (242)
T cd04724 8 AGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNP 87 (242)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCH
Confidence 46766566778888888888888866 44333332 1111 222222234555665554433445667778887
Q ss_pred hhH---HHHHHHHHHcCCceEEEE
Q 023655 137 NLV---LKMANALQRFGLKRALVV 157 (279)
Q Consensus 137 ~~~---~~~a~~~~~lg~~~~lvv 157 (279)
-|. +.+.+.+...|. ..+++
T Consensus 88 ~~~~G~~~fi~~~~~aG~-~giii 110 (242)
T cd04724 88 ILQYGLERFLRDAKEAGV-DGLII 110 (242)
T ss_pred HHHhCHHHHHHHHHHCCC-cEEEE
Confidence 443 567777778888 56666
No 124
>PRK11670 antiporter inner membrane protein; Provisional
Probab=23.21 E-value=54 Score=31.02 Aligned_cols=31 Identities=32% Similarity=0.444 Sum_probs=23.9
Q ss_pred ecCCCCCCCcccchHHHHHHHHcCCCcEEeeCC
Q 023655 18 VGTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (279)
Q Consensus 18 ~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~ 50 (279)
.|-||.|+.| ++.-.|..||+.|.+|..-=.
T Consensus 114 S~KGGVGKTT--~avNLA~aLA~~G~rVlLID~ 144 (369)
T PRK11670 114 SGKGGVGKSS--TAVNLALALAAEGAKVGILDA 144 (369)
T ss_pred CCCCCCCHHH--HHHHHHHHHHHCCCcEEEEeC
Confidence 5669999986 455568889999999987544
No 125
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.19 E-value=84 Score=29.18 Aligned_cols=90 Identities=14% Similarity=0.131 Sum_probs=53.1
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHhcCeEEEeC-Ccc-----------------ChhhhchHHHHhhhCCCChhHhhhhccC
Q 023655 61 DVLEALGVVIDLDPEGVRRCVDEAGIGFMMS-TKY-----------------HPAMKFVRPVRKKLKVKTVFNILGPMLN 122 (279)
Q Consensus 61 dvLe~LGi~~~~~~~~~~~~l~~~g~~fl~~-~~~-----------------~Pal~~l~~lR~~lg~Rt~~ntl~pLlN 122 (279)
+.|+.++..=-.+...+.+...++||.|+=. +.+ .+.++.+..+-++.|+|-.+|-
T Consensus 41 ~~l~~l~~~Nl~~l~~~L~~n~~~~I~f~RisS~l~P~ash~~~~~~~~~~~~~~l~~iG~~a~~~~iRLS~Hp------ 114 (312)
T TIGR00629 41 EAVLTLGKANLRDTMKTLHWNIGHGIPFYRFSSSIFPFASHPDVGYDLVTFAQKELREIGELAKTHQHRLTFHP------ 114 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcEEecCccccCcCcCchhhhhHHHHHHHHHHHHHHHHHHcCeEEEECC------
Confidence 4466665432244556666677899998855 222 2233334444456677766554
Q ss_pred CCCCCceEEeeechh-------hHHHHHHHHHHcCCc------eEEEEec
Q 023655 123 PACVPFAVVGVYNEN-------LVLKMANALQRFGLK------RALVVHS 159 (279)
Q Consensus 123 P~~~~~~v~Gv~h~~-------~~~~~a~~~~~lg~~------~~lvv~G 159 (279)
+.+.+++-..|+ .+..+++++..+|.+ ..+|||.
T Consensus 115 ---~qfi~LnS~~~evv~~Si~~L~~ha~~l~~mg~~~~~~~~~~iviH~ 161 (312)
T TIGR00629 115 ---GQFTQFTSPRESVVKSAIRDLAYHDEMLSAMKLAEQLNKDAVIIIHI 161 (312)
T ss_pred ---CccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccCCCceEEEcc
Confidence 334444444444 455688999999854 5899993
No 126
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=23.13 E-value=1.6e+02 Score=25.58 Aligned_cols=70 Identities=23% Similarity=0.122 Sum_probs=45.7
Q ss_pred cceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHH-cCCCCC-----CCHHHHHHHHHh
Q 023655 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEA-LGVVID-----LDPEGVRRCVDE 83 (279)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~-LGi~~~-----~~~~~~~~~l~~ 83 (279)
++|+-||=.+|.+.++-..-+-.-+-+.|+++....|.+--+..-..+.|.. +|+++. .+..-+.+.|.+
T Consensus 2 lfD~DGvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~~~~~~~l~~ 77 (236)
T TIGR01460 2 LFDIDGVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSGSVTKDLLRQ 77 (236)
T ss_pred EEeCcCccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHHHHHHHHHHH
Confidence 4688888888877555322233334556999999999886566666677777 788653 233455666665
No 127
>PF13627 LPAM_2: Prokaryotic lipoprotein-attachment site
Probab=22.90 E-value=64 Score=18.12 Aligned_cols=14 Identities=21% Similarity=0.480 Sum_probs=10.9
Q ss_pred hHHHHHHHHcCCCc
Q 023655 31 STGASILAAACGAK 44 (279)
Q Consensus 31 s~~aA~vlA~~G~~ 44 (279)
..++++.+++||.|
T Consensus 5 ~~~~~~~LsgCG~K 18 (24)
T PF13627_consen 5 LLALALALSGCGQK 18 (24)
T ss_pred HHHHHHHHHhcccC
Confidence 45678888999976
No 128
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=22.89 E-value=37 Score=27.73 Aligned_cols=48 Identities=8% Similarity=0.117 Sum_probs=32.6
Q ss_pred HHHcCCCCCCCHHHHHHHHHhcCeEEEeCCccChhhhchHHHHhhhCCCCh
Q 023655 63 LEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTV 113 (279)
Q Consensus 63 Le~LGi~~~~~~~~~~~~l~~~g~~fl~~~~~~Pal~~l~~lR~~lg~Rt~ 113 (279)
++-++|+.+.+.+++.+.+++.++.|++.|...+... .+.+.+|+..+
T Consensus 66 ~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~---~l~~~y~v~~i 113 (146)
T cd03008 66 LALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRR---ELEAQFSVEEL 113 (146)
T ss_pred EEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHH---HHHHHcCCCCC
Confidence 4556888888888999999999988777665543222 33445555433
No 129
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=22.76 E-value=36 Score=25.70 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=35.4
Q ss_pred eeCCCCCCCcCcHHHHHHHc---CCCC-------CCCHHHHHHHHHhcCeEEEeCCccChhhhchHHHHhhhC
Q 023655 47 KQGSRSSSSACGSADVLEAL---GVVI-------DLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLK 109 (279)
Q Consensus 47 kHG~~~~~~~~Gs~dvLe~L---Gi~~-------~~~~~~~~~~l~~~g~~fl~~~~~~Pal~~l~~lR~~lg 109 (279)
.+|+..++ |+.+.++.| |+++ ..++++..+.|++.||.+-.-..+.|+.....-+++..+
T Consensus 10 ~~g~~~ip---ga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~~~~ 79 (101)
T PF13344_consen 10 YNGNEPIP---GAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKEHKG 79 (101)
T ss_dssp EETTEE-T---THHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHHHTT
T ss_pred EeCCCcCc---CHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHhcCC
Confidence 34544433 445555444 7653 356688888888888886665777777766666666433
No 130
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=22.72 E-value=73 Score=29.32 Aligned_cols=97 Identities=15% Similarity=0.181 Sum_probs=61.8
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHhcCeEEEeC-Ccc-----Ch-------------hhhchHHHHhhhCCCChhHhhhhcc
Q 023655 61 DVLEALGVVIDLDPEGVRRCVDEAGIGFMMS-TKY-----HP-------------AMKFVRPVRKKLKVKTVFNILGPML 121 (279)
Q Consensus 61 dvLe~LGi~~~~~~~~~~~~l~~~g~~fl~~-~~~-----~P-------------al~~l~~lR~~lg~Rt~~ntl~pLl 121 (279)
+.|+.+...=-.+...+.+...++||.|+=. +.+ || .++.+..+.++.|+|..+| -.-++
T Consensus 37 ~~l~~~~~~Nl~~l~~~l~~~~~~~I~~~R~sS~l~P~~~h~~~~~w~~~~~~~~~~~~~g~~~~~~~irls~H-p~y~i 115 (303)
T PRK02308 37 EKLEEIALSNLENLLRILKYNIAHGIGLFRLSSSLIPLATHPELEGWDYIEPFKEELREIGEFIKEHNIRLSFH-PDQFV 115 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEcccCcCCCCCChhhcccCCCCCCHHHHHHHHHHHHHcCCCeecc-Chhhh
Confidence 5555554322234456666667888888744 222 23 4456667778889999999 67899
Q ss_pred CCCCCCceEEeeechhhHHHHHHHHHHcCCc--eEEEEec
Q 023655 122 NPACVPFAVVGVYNENLVLKMANALQRFGLK--RALVVHS 159 (279)
Q Consensus 122 NP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~--~~lvv~G 159 (279)
|++.+.-.+. -.+-..+..+.+.+..+|.+ ..+|+|.
T Consensus 116 nL~S~~~ev~-e~Si~~L~~~~~~~~~lG~~~~~~vViHp 154 (303)
T PRK02308 116 VLNSPKPEVV-ENSIKDLEYHAKLLDLMGIDDSSKINIHV 154 (303)
T ss_pred cCCCCCHHHH-HHHHHHHHHHHHHHHHCCCCCCCEEEECC
Confidence 9976543221 11234556678888899985 2899994
No 131
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=22.69 E-value=44 Score=31.54 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=27.0
Q ss_pred CcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCC
Q 023655 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSS 53 (279)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~ 53 (279)
++|-|.||.| +.| ++.+.+-+|.++|++|-.+++...
T Consensus 19 ~vI~VtGTNG--KgS--t~~~l~~iL~~~g~~vg~~tSphl 55 (397)
T TIGR01499 19 PVIHVAGTNG--KGS--TCAFLESILRAAGYKVGLFTSPHL 55 (397)
T ss_pred CEEEEeCCCC--hHH--HHHHHHHHHHHcCCCeeEEeCCCc
Confidence 4566666655 442 366677888999999999998764
No 132
>PF07471 Phage_Nu1: Phage DNA packaging protein Nu1; InterPro: IPR010906 This entry is represented by the Bacteriophage lambda, Nu1, terminase small subunit. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Terminase, the DNA packaging enzyme of bacteriophage lambda, is a heteromultimer composed of subunits Nu1 and A. The smaller Nu1 terminase subunit has a low-affinity ATPase stimulated by non-specific DNA [].; PDB: 1J9I_A.
Probab=22.63 E-value=35 Score=28.62 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=23.6
Q ss_pred ccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHc
Q 023655 28 VNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL 66 (279)
Q Consensus 28 ~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~L 66 (279)
|++|+-+-==.-..|+||+.+|+++....+-++++.+-+
T Consensus 12 ~gvS~~ti~~W~~~G~Pv~~~gg~G~~~~~d~~~vi~W~ 50 (164)
T PF07471_consen 12 FGVSERTIDKWQRQGMPVVSRGGRGREWEYDTADVIQWY 50 (164)
T ss_dssp TT--HHHHHHHTTTT---SS-GGCTS--EEECCHHHHHH
T ss_pred HCCCHHHHHHHHHCCCchhccCCCCccceecHHHHHHHH
Confidence 556665444445679999999999998888899998766
No 133
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=22.54 E-value=2.5e+02 Score=26.88 Aligned_cols=128 Identities=20% Similarity=0.235 Sum_probs=65.6
Q ss_pred eecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCCCHHHHHHHHHhcCeEEEeC--Ccc
Q 023655 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMS--TKY 94 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~~~~~~~~~l~~~g~~fl~~--~~~ 94 (279)
.+|.||-|. .++|.+|.+.|+.|. |.+..... -..+-|+++|+.+...... ...+++..+..... |.-
T Consensus 4 figigG~gm------~~la~~l~~~G~~V~--~~D~~~~~-~~~~~l~~~gi~~~~~~~~-~~~~~~~d~vV~SpgI~~~ 73 (448)
T TIGR01081 4 ILGICGTFM------GGLAMIAKQLGHEVT--GSDANVYP-PMSTQLEAQGIEIIEGFDA-AQLEPKPDLVVIGNAMKRG 73 (448)
T ss_pred EEEECHHhH------HHHHHHHHhCCCEEE--EECCCCCc-HHHHHHHHCCCEEeCCCCH-HHCCCCCCEEEECCCCCCC
Confidence 456666664 356888899999997 55543221 1223488889887532111 12233344443322 444
Q ss_pred ChhhhchHHHHhhhCC--CChhHhhhhccCCCCCCceEEeeechh-hHHHHHHHHHHcCCceEEEEe
Q 023655 95 HPAMKFVRPVRKKLKV--KTVFNILGPMLNPACVPFAVVGVYNEN-LVLKMANALQRFGLKRALVVH 158 (279)
Q Consensus 95 ~Pal~~l~~lR~~lg~--Rt~~ntl~pLlNP~~~~~~v~Gv~h~~-~~~~~a~~~~~lg~~~~lvv~ 158 (279)
||.+... | +.|+ .+=.-.+..++.+......|+|-.-|. .-.+++.+|+..|.+...++.
T Consensus 74 ~~~~~~a---~-~~~i~v~~~~e~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~~~ 136 (448)
T TIGR01081 74 NPCVEAV---L-NLNLPYTSGPQWLHDFVLHDRWVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIG 136 (448)
T ss_pred CHHHHHH---H-HCCCCEEeHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCCcEEeC
Confidence 5554433 2 2333 233334444332221134455554444 456677778888875444433
No 134
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=22.53 E-value=67 Score=19.63 Aligned_cols=31 Identities=29% Similarity=0.265 Sum_probs=25.8
Q ss_pred HHHHHHHHHHcCcCCCHHHHHHHHHHHHHcc
Q 023655 229 ILNAAAALLVSCKVNTLAEGVALAREIQLSG 259 (279)
Q Consensus 229 ~~naa~~L~~~g~~~~~~eg~~~a~~~l~sG 259 (279)
.+|=|-+|.-+....++++|+.+-+++++++
T Consensus 4 ~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~~~ 34 (35)
T PF14852_consen 4 QFNYAWGLVKSNNREDQQEGIALLEELYRDE 34 (35)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHCCCS
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 4688888998888888999999998887654
No 135
>PHA02518 ParA-like protein; Provisional
Probab=22.25 E-value=56 Score=27.32 Aligned_cols=30 Identities=33% Similarity=0.329 Sum_probs=21.2
Q ss_pred CCCCCCCcccchHHHHHHHHcCCCcEEeeCCC
Q 023655 20 TGGDGANTVNISTGASILAAACGAKVAKQGSR 51 (279)
Q Consensus 20 tggdG~~t~nis~~aA~vlA~~G~~V~kHG~~ 51 (279)
-||.|+.|+ +...|-.+|+.|.+|+.-=-+
T Consensus 9 KGGvGKTT~--a~~la~~la~~g~~vlliD~D 38 (211)
T PHA02518 9 KGGAGKTTV--ATNLASWLHADGHKVLLVDLD 38 (211)
T ss_pred CCCCCHHHH--HHHHHHHHHhCCCeEEEEeCC
Confidence 488999862 334466788899999965443
No 136
>PF01364 Peptidase_C25: Peptidase family C25 This family belongs to family C25 of the peptidase classification.; InterPro: IPR001769 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C25 (gingipain, clan CD). The protein fold of the peptidase domain for members of this entry resembles that of caspase 1, the type example for clan CD. This is a protein family found only in the bacteria. Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=22.06 E-value=1.3e+02 Score=28.30 Aligned_cols=69 Identities=9% Similarity=0.095 Sum_probs=45.8
Q ss_pred EEeCCccChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcC---CceEEEEecCC
Q 023655 88 FMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFG---LKRALVVHSEG 161 (279)
Q Consensus 88 fl~~~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg---~~~~lvv~GeG 161 (279)
++.-+.|.+++.++...|++.|+++.+-+++-+.|-.. -|..++.-+..+.+-+-.-. ..+.+++=|++
T Consensus 3 IIt~~~~~~~~~~la~~r~~~G~~~~vv~v~~I~~~f~-----~G~~~~~aIR~fi~~~y~~~~~~~~~yvlLvGd~ 74 (378)
T PF01364_consen 3 IITPPEFMDAAQRLAEWRRSQGYKVLVVTVEDIYNEFS-----YGIPDPTAIRNFIRYAYDNWSPPKPRYVLLVGDA 74 (378)
T ss_dssp EEE-GGGGGG-HHHHHHHHHTT-EEEEEEHHHH-SS------------HHHHHHHHHHHHHST----EEEEEEES-T
T ss_pred EEECHHHHHHHHHHHHHHHHcCCcEEEEEHHHhhhhhh-----hccccHHHHHHHHHHHHHhcccCCCcEEEEEccc
Confidence 45568899999999999999999999999999888654 47778888777777766665 34667777866
No 137
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=21.92 E-value=45 Score=30.07 Aligned_cols=30 Identities=30% Similarity=0.449 Sum_probs=20.7
Q ss_pred cCCCCCCCcccchHHHHHHHHcCCCcEEeeCC
Q 023655 19 GTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (279)
Q Consensus 19 gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~ 50 (279)
|=||.|+.| ++.-.|..||..|.+|..-=-
T Consensus 8 gKGGvGKST--va~~lA~aLa~~G~kVg~lD~ 37 (261)
T PF09140_consen 8 GKGGVGKST--VAVNLAVALARMGKKVGLLDL 37 (261)
T ss_dssp SSTTTTHHH--HHHHHHHHHHCTT--EEEEE-
T ss_pred CCCCCcHHH--HHHHHHHHHHHCCCeEEEEec
Confidence 558999986 566667889999999986433
No 138
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=21.80 E-value=2.9e+02 Score=26.82 Aligned_cols=81 Identities=19% Similarity=0.156 Sum_probs=47.2
Q ss_pred CcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHH----HHHcCCCCCC-----CHH----HHHH
Q 023655 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADV----LEALGVVIDL-----DPE----GVRR 79 (279)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dv----Le~LGi~~~~-----~~~----~~~~ 79 (279)
..+=++|.+|.|+.|. ..-.|..+...|.+|..-..+.. +.+..+- .+.+|+++.. ++. ++.+
T Consensus 96 ~vI~lvG~~GsGKTTt--aakLA~~L~~~g~kV~lV~~D~~--R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 96 QTIMLVGLQGSGKTTT--AAKLARYFKKKGLKVGLVAADTY--RPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred eEEEEECCCCCcHHHH--HHHHHHHHHHcCCeEEEecCCCC--CHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 3455899999999741 22234446677999987655433 3344443 3456777542 222 2233
Q ss_pred HHHhcCeEEEeCCccChh
Q 023655 80 CVDEAGIGFMMSTKYHPA 97 (279)
Q Consensus 80 ~l~~~g~~fl~~~~~~Pa 97 (279)
.+.+..+.++..+--++.
T Consensus 172 ~~~~~DvVIIDTAGr~~~ 189 (437)
T PRK00771 172 KFKKADVIIVDTAGRHAL 189 (437)
T ss_pred HhhcCCEEEEECCCcccc
Confidence 344568888888654443
No 139
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=21.59 E-value=69 Score=29.89 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=27.9
Q ss_pred CcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCC
Q 023655 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSR 51 (279)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~ 51 (279)
..|=++|-||.|+.| ++.-.|..+|..|.+|..-+.+
T Consensus 32 ~ii~v~gkgG~GKSt--~a~nLa~~la~~g~rVllid~D 68 (329)
T cd02033 32 QIIAIYGKGGIGKSF--TLANLSYMMAQQGKRVLLIGCD 68 (329)
T ss_pred eEEEEECCCCCCHHH--HHHHHHHHHHHCCCcEEEEEee
Confidence 456678999999986 3444577788999999976554
No 140
>PF14272 Gly_rich_SFCGS: Glycine-rich SFCGS
Probab=21.58 E-value=57 Score=24.95 Aligned_cols=31 Identities=35% Similarity=0.626 Sum_probs=21.5
Q ss_pred ceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCC
Q 023655 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSS 55 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~ 55 (279)
|-.||+||.|.-|.. -..|+|+ +||-|++..
T Consensus 51 iSFCGSGGAGAitA~---------tKygy~~-~~gmRSv~~ 81 (115)
T PF14272_consen 51 ISFCGSGGAGAITAQ---------TKYGYKA-RHGMRSVDE 81 (115)
T ss_pred eEEecCCCccceeec---------cccCCch-hcCccchhh
Confidence 678999999886422 2467774 678777554
No 141
>PF03814 KdpA: Potassium-transporting ATPase A subunit; InterPro: IPR004623 Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilise the complex. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolysing (energy providing) subunit [].; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0005886 plasma membrane
Probab=21.57 E-value=40 Score=33.60 Aligned_cols=67 Identities=16% Similarity=0.269 Sum_probs=51.0
Q ss_pred cccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCCCHHHHHHHHHhcCeEEEeCCccChh
Q 023655 27 TVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPA 97 (279)
Q Consensus 27 t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~~~~~~~~~l~~~g~~fl~~~~~~Pa 97 (279)
-+|+|...|+++.++|+|--.++...++.-.|..+.+. +| |++ ..++.++|-.+|-+|..+..-||-
T Consensus 174 LLPlS~v~AliLv~qGVpQtf~~~~~v~tleg~~Q~i~-~G-PvA--s~eaIK~LGTNGGGff~aNSAhPf 240 (552)
T PF03814_consen 174 LLPLSFVFALILVSQGVPQTFSGYVTVTTLEGATQTIP-LG-PVA--SQEAIKQLGTNGGGFFGANSAHPF 240 (552)
T ss_pred HHHHHHHHHHHHHhcCccccccCCceeeeeccceeeec-cC-ccH--HHHHHHHhccCCCcccCCCCCCCC
Confidence 46889999999999999999999988765555444322 22 332 367788889999999999888873
No 142
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=21.52 E-value=65 Score=25.00 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=39.2
Q ss_pred CCCCCCCHHHHHHHHHhcCeEEEeCC--ccChhhhchHHHHhhhCCCChhHhhhh
Q 023655 67 GVVIDLDPEGVRRCVDEAGIGFMMST--KYHPAMKFVRPVRKKLKVKTVFNILGP 119 (279)
Q Consensus 67 Gi~~~~~~~~~~~~l~~~g~~fl~~~--~~~Pal~~l~~lR~~lg~Rt~~ntl~p 119 (279)
|.|-|.+-.++.+.|+++|+.|-+.. .--|....|..+-+.+|++.++|+-+.
T Consensus 6 ~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~~~g~~~l~n~~~~ 60 (113)
T cd03033 6 EKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFGDLPVAEWFNPAAP 60 (113)
T ss_pred ECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHHHcCHHHHHhcccH
Confidence 56677777889999999999887764 334666677777778887777776443
No 143
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=21.30 E-value=1.1e+02 Score=28.08 Aligned_cols=33 Identities=9% Similarity=0.067 Sum_probs=23.5
Q ss_pred CCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCC
Q 023655 21 GGDGANTVNISTGASILAAACGAKVAKQGSRSSS 54 (279)
Q Consensus 21 ggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~ 54 (279)
-|.+...+|+-.+..+ -...++|.++||+.+.+
T Consensus 182 ~y~~~p~Ld~~~L~~I-~~~~~vPLVLHGgSG~~ 214 (284)
T PRK09195 182 MYKGEPKLDFDRLENI-RQWVNIPLVLHGASGLP 214 (284)
T ss_pred ccCCCCcCCHHHHHHH-HHHhCCCeEEecCCCCC
Confidence 5666447787766655 45569999999997644
No 144
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=21.24 E-value=1.5e+02 Score=29.93 Aligned_cols=53 Identities=25% Similarity=0.263 Sum_probs=45.4
Q ss_pred CChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCceEEEEecCCcc
Q 023655 111 KTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLD 163 (279)
Q Consensus 111 Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~lvv~GeG~d 163 (279)
..+-|.++||+.=+..++-|+=-.+|.+..-++..+...+++-.+++.|||+-
T Consensus 197 ~~F~~~v~Pll~~A~i~~evv~T~~~~HArei~rt~dl~kyDgIv~vsGDGl~ 249 (579)
T KOG1116|consen 197 KLFKNHVEPLLSEAGISFEVVLTTRPNHAREIVRTLDLGKYDGIVCVSGDGLL 249 (579)
T ss_pred HHHHhhhhhhhhhcCceEEEEEecCccHHHHHHHhhhccccceEEEecCCcCH
Confidence 35778999999988899999989999999999988877788778888889964
No 145
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=21.10 E-value=71 Score=28.53 Aligned_cols=31 Identities=29% Similarity=0.431 Sum_probs=23.4
Q ss_pred ceeecC-CCCCCCcccchHHHHHHHHcCCCcEEe
Q 023655 15 VDIVGT-GGDGANTVNISTGASILAAACGAKVAK 47 (279)
Q Consensus 15 ~D~~gt-ggdG~~t~nis~~aA~vlA~~G~~V~k 47 (279)
|=++|+ ||.|+.| ++-..|-.|+..|.+|+-
T Consensus 4 iai~s~kGGvG~TT--ltAnLA~aL~~~G~~Vla 35 (243)
T PF06564_consen 4 IAIVSPKGGVGKTT--LTANLAWALARLGESVLA 35 (243)
T ss_pred EEEecCCCCCCHHH--HHHHHHHHHHHCCCcEEE
Confidence 345565 8888876 455578889999999985
No 146
>PF13941 MutL: MutL protein
Probab=21.05 E-value=5.8e+02 Score=25.07 Aligned_cols=117 Identities=24% Similarity=0.391 Sum_probs=71.4
Q ss_pred CCcceeecCCCCCCCcccchHHHHHHHHcC--CCcEEeeCCCCCCCcCcHHHHHHHcCCCCCCCHHHHHHHHHhcCeEEE
Q 023655 12 GDAVDIVGTGGDGANTVNISTGASILAAAC--GAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFM 89 (279)
Q Consensus 12 ~~~~D~~gtggdG~~t~nis~~aA~vlA~~--G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~~~~~~~~~l~~~g~~fl 89 (279)
+++|=.+| |-||-+.-.+ .--|-+||.. .+||+-=||+. ..+++++.|++.|.-+.
T Consensus 125 PDiILLaG-GtDgG~~~~i-l~nA~~La~~~~~~pVIyAGN~~--------------------a~~~v~~il~~~~~~~~ 182 (457)
T PF13941_consen 125 PDIILLAG-GTDGGNKEVI-LHNAEMLAEANLRIPVIYAGNKA--------------------AQDEVEEILEKAGKEVV 182 (457)
T ss_pred CCEEEEeC-CccCCchHHH-HHHHHHHHhCCCCCcEEEECCHH--------------------HHHHHHHHHHhCCCCEE
Confidence 45555788 8888763222 2234445554 56788888865 35788999998999999
Q ss_pred eCCccChhhhch--HHHHhhhC---------CCChhHhhhhccC-CCCCCceEEeeechhhHHHHHHHHHHcCCceEEEE
Q 023655 90 MSTKYHPAMKFV--RPVRKKLK---------VKTVFNILGPMLN-PACVPFAVVGVYNENLVLKMANALQRFGLKRALVV 157 (279)
Q Consensus 90 ~~~~~~Pal~~l--~~lR~~lg---------~Rt~~ntl~pLlN-P~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~lvv 157 (279)
..++.-|.+..+ -|.|+.+. -+-. +-+..+.+ |. +.-|.-.-...+++..-+....++|
T Consensus 183 ~~~NV~P~i~~ln~~paR~~I~~~F~~~Ii~akGl-~~~~~~~~~~i--------~PTP~AVl~~~~lla~~~~g~llvV 253 (457)
T PF13941_consen 183 ITENVMPKIDVLNVEPAREAIREVFLRHIIQAKGL-SKLREMVDGPI--------MPTPAAVLRAAELLAEGGIGDLLVV 253 (457)
T ss_pred EeCCCCCCCCCcChHHHHHHHHHHHHHHHhcCCCH-HHHHHHhCCcc--------cCCHHHHHHHHHHHHhcccCCEEEE
Confidence 999888887654 45555442 1111 11222221 21 2234555566777777566788988
Q ss_pred ec
Q 023655 158 HS 159 (279)
Q Consensus 158 ~G 159 (279)
.-
T Consensus 254 DI 255 (457)
T PF13941_consen 254 DI 255 (457)
T ss_pred Ec
Confidence 83
No 147
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=20.91 E-value=69 Score=27.58 Aligned_cols=29 Identities=34% Similarity=0.514 Sum_probs=21.8
Q ss_pred ecCCCCCCCcccchHHHHHHHHcCCCcEEee
Q 023655 18 VGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (279)
Q Consensus 18 ~gtggdG~~t~nis~~aA~vlA~~G~~V~kH 48 (279)
.+-||.|+.| ++...|..+|..|.+|+.-
T Consensus 7 ~~KGGvGKTt--~a~~LA~~la~~g~~Vlli 35 (251)
T TIGR01969 7 SGKGGTGKTT--ITANLGVALAKLGKKVLAL 35 (251)
T ss_pred cCCCCCcHHH--HHHHHHHHHHHCCCeEEEE
Confidence 3558999986 3445677788899999874
No 148
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=20.77 E-value=3.3e+02 Score=25.44 Aligned_cols=105 Identities=20% Similarity=0.198 Sum_probs=57.4
Q ss_pred hHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHc---CCCCC-----CCH---HHHHHHHHhcC-----eEEEeCCcc
Q 023655 31 STGASILAAACGAKVAKQGSRSSSSACGSADVLEAL---GVVID-----LDP---EGVRRCVDEAG-----IGFMMSTKY 94 (279)
Q Consensus 31 s~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~L---Gi~~~-----~~~---~~~~~~l~~~g-----~~fl~~~~~ 94 (279)
..-++=.+...|+++.|-|++.++. -++|+.+ |.|+- .+. +.+.+.+.+.| ++.|+-..-
T Consensus 98 d~~svd~l~~~~v~~~KIaS~~~~n----~pLL~~~A~~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~ 173 (329)
T TIGR03569 98 DLESADFLEDLGVPRFKIPSGEITN----APLLKKIARFGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTE 173 (329)
T ss_pred CHHHHHHHHhcCCCEEEECcccccC----HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCC
Confidence 4455677788999999999988765 3344443 54432 234 44555555544 777766555
Q ss_pred ChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCc
Q 023655 95 HPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLK 152 (279)
Q Consensus 95 ~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~ 152 (279)
.|.-..-.+||..=-+|..|+. | +|+.+-.....+.-++-.+|..
T Consensus 174 YP~~~~~~nL~~I~~Lk~~f~~------p-------VG~SdHt~G~~~~~aAvalGA~ 218 (329)
T TIGR03569 174 YPAPFEDVNLNAMDTLKEAFDL------P-------VGYSDHTLGIEAPIAAVALGAT 218 (329)
T ss_pred CCCCcccCCHHHHHHHHHHhCC------C-------EEECCCCccHHHHHHHHHcCCC
Confidence 5654444444432222222221 2 3444444444555666667763
No 149
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=20.71 E-value=1e+02 Score=30.12 Aligned_cols=43 Identities=28% Similarity=0.284 Sum_probs=35.0
Q ss_pred CCCCCC-cccchHHHHHHHHcCCCcEEeeCCCCCCCcCc-HHHHH
Q 023655 21 GGDGAN-TVNISTGASILAAACGAKVAKQGSRSSSSACG-SADVL 63 (279)
Q Consensus 21 ggdG~~-t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~G-s~dvL 63 (279)
|+||+- ..++.--+.-++|++|+.+++-|..+.+|.-. |.-++
T Consensus 60 G~D~~~~se~a~~~~lev~aANgv~~iv~~~~g~~~TPAaSh~I~ 104 (524)
T COG0033 60 GGDTHALSEPAIQSALEVLAANGVEVIVQGQGGFTPTPAASHAIL 104 (524)
T ss_pred CCCcccccHHHHHHHHHHHHhcCceEEEecCCCccCchHHHHHHH
Confidence 788887 66777778889999999999999999887643 55566
No 150
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=20.69 E-value=70 Score=27.57 Aligned_cols=32 Identities=19% Similarity=0.192 Sum_probs=23.8
Q ss_pred cCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCC
Q 023655 19 GTGGDGANTVNISTGASILAAACGAKVAKQGSRS 52 (279)
Q Consensus 19 gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~ 52 (279)
+-||.|+.| ++...|..+|..|.+|+.-=.+.
T Consensus 9 ~KGGvGKTt--~a~nla~~la~~g~~VlliD~D~ 40 (246)
T TIGR03371 9 VKGGVGKTT--LTANLASALKLLGEPVLAIDLDP 40 (246)
T ss_pred CCCCccHHH--HHHHHHHHHHhCCCcEEEEeCCC
Confidence 469999986 35556777888999999765543
No 151
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=20.65 E-value=7.8e+02 Score=24.06 Aligned_cols=133 Identities=17% Similarity=0.181 Sum_probs=82.9
Q ss_pred CcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCC---cCc-------------HHHHHHHcCCCCCCC---
Q 023655 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSS---ACG-------------SADVLEALGVVIDLD--- 73 (279)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~---~~G-------------s~dvLe~LGi~~~~~--- 73 (279)
..|=++|.|-+ ...+|.-|+..|+.|..+++..... ..| -.+.|+..|+.+...
T Consensus 124 ~~VaviGaGPA-------Gl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~v 196 (457)
T COG0493 124 KKVAVIGAGPA-------GLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRV 196 (457)
T ss_pred CEEEEECCCch-------HhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceE
Confidence 34556665544 4456999999999999999987543 123 356788888654311
Q ss_pred --HHHHHHHHHhcCeEEEe---------------CCccChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeech
Q 023655 74 --PEGVRRCVDEAGIGFMM---------------STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNE 136 (279)
Q Consensus 74 --~~~~~~~l~~~g~~fl~---------------~~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~ 136 (279)
.-++++.+++.-..|+. ++..++++..|..++++... .... .+...+.+-+..|+|.-.-
T Consensus 197 G~~it~~~L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~-~~~~--~~~~~~~gk~vvVIGgG~T 273 (457)
T COG0493 197 GRDITLEELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLG-DFAE--DRTPPAKGKRVVVIGGGDT 273 (457)
T ss_pred CCcCCHHHHHHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhc-cccc--ccCCCCCCCeEEEECCCCC
Confidence 12344445555555553 34667788888888754432 1110 1222333467889999987
Q ss_pred hhHHHHHHHHHHcCCceEEEE
Q 023655 137 NLVLKMANALQRFGLKRALVV 157 (279)
Q Consensus 137 ~~~~~~a~~~~~lg~~~~lvv 157 (279)
++.-. .....+|.+...++
T Consensus 274 a~D~~--~t~~r~Ga~~v~~~ 292 (457)
T COG0493 274 AMDCA--GTALRLGAKSVTCF 292 (457)
T ss_pred HHHHH--HHHhhcCCeEEEEe
Confidence 77653 66778898888777
No 152
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=20.63 E-value=51 Score=31.70 Aligned_cols=67 Identities=21% Similarity=0.261 Sum_probs=39.0
Q ss_pred ceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeC---------CCCCCCc--CcHHHHHHHcC----CCCCCCHHHHHH
Q 023655 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQG---------SRSSSSA--CGSADVLEALG----VVIDLDPEGVRR 79 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG---------~~~~~~~--~Gs~dvLe~LG----i~~~~~~~~~~~ 79 (279)
|-+.||||.|.-+ +..+|..|..|+--= |++.++- -|.+++|+.=. +.... +.++
T Consensus 3 I~viGtGYVGLv~-------g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTt---d~~~ 72 (414)
T COG1004 3 ITVIGTGYVGLVT-------GACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTT---DYEE 72 (414)
T ss_pred eEEECCchHHHHH-------HHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEc---CHHH
Confidence 5689999987654 889999998887322 1333332 25666665432 22222 2333
Q ss_pred HHHhcCeEEEeC
Q 023655 80 CVDEAGIGFMMS 91 (279)
Q Consensus 80 ~l~~~g~~fl~~ 91 (279)
.+++.-+.|+..
T Consensus 73 a~~~adv~fIav 84 (414)
T COG1004 73 AVKDADVVFIAV 84 (414)
T ss_pred HHhcCCEEEEEc
Confidence 455666666654
No 153
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=20.62 E-value=1.5e+02 Score=20.31 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=27.0
Q ss_pred CcHHHHHHHcCCCCC--CCHHHHHHHHHhcCeEEEeC
Q 023655 57 CGSADVLEALGVVID--LDPEGVRRCVDEAGIGFMMS 91 (279)
Q Consensus 57 ~Gs~dvLe~LGi~~~--~~~~~~~~~l~~~g~~fl~~ 91 (279)
.+..++++.|+.+.. ++.+++++.+++.|---+..
T Consensus 4 ~~~~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~ 40 (69)
T PF00690_consen 4 LSVEEVLKRLNTSSSQGLSSEEVEERRKKYGPNELPE 40 (69)
T ss_dssp SSHHHHHHHHTTBTSSBBTHHHHHHHHHHHSSSSTTT
T ss_pred CCHHHHHHHHCcCCCCCCCHHHHHHHHHhcccccccc
Confidence 457899999985544 88999999999988654433
No 154
>PRK08356 hypothetical protein; Provisional
Probab=20.60 E-value=1e+02 Score=25.85 Aligned_cols=33 Identities=21% Similarity=0.168 Sum_probs=25.0
Q ss_pred cceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCC
Q 023655 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRS 52 (279)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~ 52 (279)
.+=++|.+|.|+ ||.+-.+ +..|++++.+|++-
T Consensus 7 ~i~~~G~~gsGK-----~t~a~~l-~~~g~~~is~~~~~ 39 (195)
T PRK08356 7 IVGVVGKIAAGK-----TTVAKFF-EEKGFCRVSCSDPL 39 (195)
T ss_pred EEEEECCCCCCH-----HHHHHHH-HHCCCcEEeCCCcc
Confidence 355799999999 5555555 56899999999854
No 155
>PHA01794 hypothetical protein
Probab=20.59 E-value=1.9e+02 Score=23.27 Aligned_cols=63 Identities=25% Similarity=0.292 Sum_probs=37.1
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHHHcCcCCCHHHHHH---------------HHHHHHHccHHHHHHHHHHHH
Q 023655 209 NAEVLRRVLSGERGAIADALILNAAAALLVSCKVNTLAEGVA---------------LAREIQLSGKALNTLDLWIEV 271 (279)
Q Consensus 209 ~a~~~~~vL~G~~~~~~~~v~~naa~~L~~~g~~~~~~eg~~---------------~a~~~l~sG~a~~~l~~~~~~ 271 (279)
.-.++.++|.+...+..+.+.+.+.=+|.--...+++++.++ .=+++++||==.+++.+|++.
T Consensus 23 ag~Lf~~ile~dd~Alvdllrl~~~~~lted~~~~aI~d~v~~~~~Ee~~~e~lF~eleqEm~~SGFF~~ki~kyien 100 (134)
T PHA01794 23 AGALFFNILERDESAIVDLVRLSAKKALTEDEILDAIADFVETFEDEEGTTEGLFAELEKEMVDSGFFRAKIKKYIEN 100 (134)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhccccChhhHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 446788999998877888877755432222122222222221 234677788777777777654
No 156
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=20.19 E-value=83 Score=28.85 Aligned_cols=30 Identities=30% Similarity=0.488 Sum_probs=25.0
Q ss_pred eecCCCCCCCcccchHHHHHHHHcCCCcEEee
Q 023655 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~kH 48 (279)
.-|-||.|+.| +++-.|..||+.|.+|..-
T Consensus 53 lSGKGGVGKST--vt~nla~~La~~g~~vglL 82 (300)
T KOG3022|consen 53 LSGKGGVGKST--VTVNLALALASEGKKVGLL 82 (300)
T ss_pred EeCCCCCchhH--HHHHHHHHHhcCCCcEEEE
Confidence 46889999997 5777899999999999764
No 157
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=20.06 E-value=7.6e+02 Score=23.48 Aligned_cols=89 Identities=22% Similarity=0.216 Sum_probs=56.1
Q ss_pred CcceeecCCCCCCCcccchHHHHHHHH----cCC-CcEEeeCCCCCCCcCcHHHHHH----HcCCCCC--CC---HHHHH
Q 023655 13 DAVDIVGTGGDGANTVNISTGASILAA----ACG-AKVAKQGSRSSSSACGSADVLE----ALGVVID--LD---PEGVR 78 (279)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aA~vlA----~~G-~~V~kHG~~~~~~~~Gs~dvLe----~LGi~~~--~~---~~~~~ 78 (279)
..+=++|..|.|+. |+++.+++ ..| .+|..-..+. .+.|..+-|. .+|+++. .+ ...+.
T Consensus 138 ~ii~lvGptGvGKT-----TtiakLA~~~~~~~G~~~V~lit~D~--~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l 210 (374)
T PRK14722 138 GVFALMGPTGVGKT-----TTTAKLAARCVMRFGASKVALLTTDS--YRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL 210 (374)
T ss_pred cEEEEECCCCCCHH-----HHHHHHHHHHHHhcCCCeEEEEeccc--ccccHHHHHHHHHHHcCCceEecCCcccHHHHH
Confidence 45668999999984 44444443 335 4666554333 3566555554 5688864 33 34445
Q ss_pred HHHHhcCeEEEeCCccChhhhchHHHHhhh
Q 023655 79 RCVDEAGIGFMMSTKYHPAMKFVRPVRKKL 108 (279)
Q Consensus 79 ~~l~~~g~~fl~~~~~~Pal~~l~~lR~~l 108 (279)
+.+.+..+.++..+-+.|....+......+
T Consensus 211 ~~l~~~DlVLIDTaG~~~~d~~l~e~La~L 240 (374)
T PRK14722 211 AELRNKHMVLIDTIGMSQRDRTVSDQIAML 240 (374)
T ss_pred HHhcCCCEEEEcCCCCCcccHHHHHHHHHH
Confidence 556678899999999988766666555544
No 158
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=20.05 E-value=72 Score=27.63 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=21.7
Q ss_pred ecCCCCCCCcccchHHHHHHHHcCCCcEEee
Q 023655 18 VGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (279)
Q Consensus 18 ~gtggdG~~t~nis~~aA~vlA~~G~~V~kH 48 (279)
.+-||.|+.| ++...|..+|..|.+|+.-
T Consensus 8 s~kGGvGKTt--~a~~lA~~la~~g~~vlli 36 (261)
T TIGR01968 8 SGKGGVGKTT--TTANLGTALARLGKKVVLI 36 (261)
T ss_pred cCCCCccHHH--HHHHHHHHHHHcCCeEEEE
Confidence 3458889886 4555677788899999874
No 159
>TIGR03577 EF_0830 conserved hypothetical protein EF_0830/AHA_3911. Members of this family of small (about 120 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=20.04 E-value=68 Score=24.55 Aligned_cols=31 Identities=35% Similarity=0.592 Sum_probs=21.5
Q ss_pred ceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCC
Q 023655 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSS 55 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~ 55 (279)
|-.||+||.|.-|.. -..|+|. +||-|++..
T Consensus 51 iSFCGSGGAGAitAq---------tkyGyk~-~~gmRSvee 81 (115)
T TIGR03577 51 ISFCGSGGAGAITAQ---------TKYGYKA-RYGMRSVEE 81 (115)
T ss_pred eEEecCCCccceeec---------cccCCcc-ccCccchhh
Confidence 778999999886421 2467774 788887554
No 160
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication). Eukaryotic DNA wraps around a histone octamer to form a nucleosome, the first order of compaction of eukaryotic chromatin. The core histone octamer is composed of a central H3-H4 tetramer and two flanking H2A-H2B dimers. Each of the core histone contains a common structural motif, called the histone fold, which facilitates the interactions between the individual core histones. In addition to the core histones, there is a "linker histone" called H1 (or H5 in avian species). The linker histones present in all multicellular eukaryotes are the most divergent group of histones, with numerous cell type- and stage-specific variant. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures. Histone H5 performs the same function as histone H1, and replaces H1 in certain cells. The structure of GH5, the globular domain of the linker histone H5 is known [, ]. The fold is similar to the DNA-binding domain of the catabolite gene activator protein, CAP, thus providing a possible model for the binding of GH5 to DNA. The linker histones, which do not contain the histone fold motif, are critical to the higher-order compaction of chromatin, because they bind to internucleosomal DNA and facilitate interactions between individual nucleosomes. In addition, H1 variants have been shown to be involved in the regulation of developmental genes. A common feature of this protein family is a tripartite structure in which a globular (H15) domain of about 80 amino acids is flanked by two less structured N- and C-terminal tails. The H15 domain is also characterised by high sequence homology among the family of linker histones. The highly conserved H15 domain is essential for the binding of H1 or H5 to the nucleosome. It consists of a three helix bundle (I-III), with a beta-hairpin at the C terminus. There is also a short three-residue stretch between helices I and II that is in the beta-strand conformation. Together with the C-terminal beta-hairpin, this strand forms the third strand of an antiparallel beta-sheet [, , , ]. Proteins known to contain a H15 domain are: - Eukaryotic histone H1. The histones H1 constitute a family with many variants, differing in their affinity for chromatin. Several variants are simultaneously present in a single cell. For example, the nucleated erythrocytes of birds contain both H1 and H5, the latter being an extreme variant of H1. - Eukaryotic MHYST family of histone acetyltransferase. Histone acetyltransferases transfer an acetyl group from acetyl-CoA to the epsylon- amino group of lysine within the basic NH2-termini of histones, which bind the acidic phosphates of DNA []. This entry represents the H15 domain.; GO: 0003677 DNA binding, 0006334 nucleosome assembly, 0000786 nucleosome, 0005634 nucleus; PDB: 2LSO_A 2RQP_A 1UHM_A 1UST_A 1GHC_A 1HST_A 1YQA_A 1USS_A.
Probab=20.02 E-value=86 Score=22.34 Aligned_cols=20 Identities=5% Similarity=0.057 Sum_probs=16.9
Q ss_pred echhhHHHHHHHHHHcCCce
Q 023655 134 YNENLVLKMANALQRFGLKR 153 (279)
Q Consensus 134 ~h~~~~~~~a~~~~~lg~~~ 153 (279)
.||+|.+++.++...++.+.
T Consensus 1 shP~y~~mI~eAI~~l~er~ 20 (77)
T PF00538_consen 1 SHPPYSDMILEAIKALKERK 20 (77)
T ss_dssp -SSCHHHHHHHHHHHCCSSS
T ss_pred CCCCHHHHHHHHHHHcCCCC
Confidence 49999999999999998643
Done!