Query 023655
Match_columns 279
No_of_seqs 150 out of 1135
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 10:34:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023655.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023655hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1khd_A Anthranilate phosphorib 100.0 1E-76 3.6E-81 549.4 29.2 270 1-271 72-344 (345)
2 1vqu_A Anthranilate phosphorib 100.0 5.4E-76 1.8E-80 549.6 32.7 273 1-273 86-373 (374)
3 2elc_A Trp D, anthranilate pho 100.0 3.7E-76 1.3E-80 542.9 29.6 268 1-273 59-328 (329)
4 4hkm_A Anthranilate phosphorib 100.0 1.8E-76 6.1E-81 549.1 27.6 274 1-274 65-341 (346)
5 3r88_A Anthranilate phosphorib 100.0 8E-75 2.7E-79 542.2 30.3 275 1-276 85-370 (377)
6 1o17_A Anthranilate PRT, anthr 100.0 5.8E-75 2E-79 537.7 27.8 270 1-274 62-332 (345)
7 3h5q_A PYNP, pyrimidine-nucleo 100.0 1.9E-52 6.5E-57 395.0 22.5 237 1-276 65-323 (436)
8 2dsj_A Pyrimidine-nucleoside ( 100.0 1.8E-51 6.3E-56 387.0 20.4 236 1-277 62-314 (423)
9 1brw_A PYNP, protein (pyrimidi 100.0 2.3E-50 7.9E-55 381.6 23.5 234 1-277 62-321 (433)
10 1uou_A Thymidine phosphorylase 100.0 4E-50 1.4E-54 382.7 24.1 233 1-276 89-348 (474)
11 2tpt_A Thymidine phosphorylase 100.0 1.1E-50 3.9E-55 384.3 14.8 245 1-277 63-325 (440)
12 4ex8_A ALNA; alpha/beta/alpha- 70.6 3.1 0.00011 37.1 3.5 124 16-149 104-261 (316)
13 4gim_A Pseudouridine-5'-phosph 65.8 10 0.00035 34.0 5.9 108 17-131 125-267 (335)
14 1vkm_A Conserved hypothetical 56.0 34 0.0012 30.1 7.4 116 17-158 98-226 (297)
15 3cio_A ETK, tyrosine-protein k 42.6 18 0.0006 31.6 3.5 37 13-51 105-142 (299)
16 2woo_A ATPase GET3; tail-ancho 42.1 11 0.00036 33.5 2.0 29 17-47 24-52 (329)
17 3end_A Light-independent proto 41.3 11 0.00039 32.5 2.0 35 14-50 43-77 (307)
18 3fwy_A Light-independent proto 39.1 13 0.00044 32.9 2.0 38 13-52 49-86 (314)
19 3iqw_A Tail-anchored protein t 38.7 18 0.00061 32.3 2.9 46 14-64 18-63 (334)
20 3ovg_A Amidohydrolase; structu 38.3 19 0.00065 32.7 3.1 71 13-85 152-234 (363)
21 3lw7_A Adenylate kinase relate 38.3 67 0.0023 24.1 6.0 27 15-47 4-30 (179)
22 3zq6_A Putative arsenical pump 38.2 12 0.00043 32.9 1.8 34 17-52 19-52 (324)
23 1ihu_A Arsenical pump-driving 38.0 13 0.00045 35.6 2.0 37 13-51 9-45 (589)
24 3ug7_A Arsenical pump-driving 37.3 14 0.00047 33.1 1.9 33 17-51 31-63 (349)
25 1vli_A Spore coat polysacchari 37.0 43 0.0015 30.7 5.2 143 17-162 32-197 (385)
26 1byi_A Dethiobiotin synthase; 36.7 14 0.00049 30.0 1.8 29 17-47 6-35 (224)
27 3epr_A Hydrolase, haloacid deh 36.7 18 0.0006 30.3 2.4 58 14-71 9-66 (264)
28 3qgm_A P-nitrophenyl phosphata 36.6 24 0.00083 29.2 3.4 58 14-71 12-69 (268)
29 3kjh_A CO dehydrogenase/acetyl 35.6 9.2 0.00031 31.5 0.4 31 18-50 6-36 (254)
30 1j3m_A The conserved hypotheti 35.5 31 0.0011 26.0 3.5 62 69-149 11-72 (129)
31 3fkq_A NTRC-like two-domain pr 34.7 29 0.00097 31.1 3.7 37 13-51 144-181 (373)
32 2woj_A ATPase GET3; tail-ancho 33.9 16 0.00055 32.8 1.8 34 17-52 23-58 (354)
33 1cp2_A CP2, nitrogenase iron p 33.6 17 0.00059 30.5 1.9 32 17-50 6-37 (269)
34 1o51_A Hypothetical protein TM 33.1 62 0.0021 24.2 4.7 29 135-163 28-57 (114)
35 2l48_A N-acetylmuramoyl-L-alan 33.1 87 0.003 22.3 5.2 38 126-163 19-56 (85)
36 3bfv_A CAPA1, CAPB2, membrane 31.0 31 0.0011 29.5 3.1 37 13-51 83-120 (271)
37 3io3_A DEHA2D07832P; chaperone 30.5 31 0.0011 30.9 3.1 47 13-64 19-67 (348)
38 2afh_E Nitrogenase iron protei 30.2 20 0.00069 30.6 1.8 30 17-48 7-36 (289)
39 3tc3_A UV damage endonuclease; 28.8 20 0.00068 32.0 1.5 102 49-159 37-163 (310)
40 2px0_A Flagellar biosynthesis 28.2 2.1E+02 0.0073 24.5 8.2 82 13-98 106-197 (296)
41 3kc2_A Uncharacterized protein 27.8 46 0.0016 29.8 3.8 58 14-71 17-75 (352)
42 4dzz_A Plasmid partitioning pr 26.7 25 0.00085 27.9 1.6 31 19-51 9-39 (206)
43 2gdt_A Leader protein; P65 hom 26.2 31 0.001 25.7 1.8 22 239-260 18-39 (116)
44 1zjj_A Hypothetical protein PH 26.1 40 0.0014 28.0 2.9 57 14-70 5-61 (263)
45 2ho4_A Haloacid dehalogenase-l 25.5 84 0.0029 25.4 4.8 58 14-71 11-68 (259)
46 2dcl_A Hypothetical UPF0166 pr 25.5 75 0.0026 24.2 4.1 29 135-163 24-53 (127)
47 1yv9_A Hydrolase, haloacid deh 24.9 69 0.0024 26.3 4.2 57 14-70 9-66 (264)
48 1q9u_A Uncharacterized protein 24.2 85 0.0029 23.4 4.2 61 70-149 15-75 (130)
49 2ph1_A Nucleotide-binding prot 24.1 31 0.0011 28.9 1.8 35 14-50 20-55 (262)
50 3q9l_A Septum site-determining 23.2 33 0.0011 28.3 1.8 30 19-50 10-39 (260)
51 3pdw_A Uncharacterized hydrola 23.2 37 0.0013 28.1 2.1 58 14-71 10-67 (266)
52 3n2l_A OPRT, oprtase, orotate 22.7 77 0.0026 26.9 4.0 71 33-110 160-238 (238)
53 2ej7_A HCG3 gene; HCG3 protein 22.1 59 0.002 22.2 2.7 36 56-97 5-40 (82)
54 3la6_A Tyrosine-protein kinase 21.9 40 0.0014 29.2 2.1 37 13-51 93-130 (286)
55 1g3q_A MIND ATPase, cell divis 21.9 37 0.0013 27.6 1.8 30 19-50 10-39 (237)
56 1hyq_A MIND, cell division inh 21.5 41 0.0014 27.9 2.1 30 18-49 9-38 (263)
57 3igf_A ALL4481 protein; two-do 21.5 18 0.00063 32.9 -0.2 32 17-50 7-38 (374)
58 3ea0_A ATPase, para family; al 21.4 38 0.0013 27.6 1.8 31 19-51 12-43 (245)
59 2wqp_A Polysialic acid capsule 21.1 70 0.0024 28.8 3.6 142 17-162 23-186 (349)
60 1g5t_A COB(I)alamin adenosyltr 21.0 66 0.0023 26.4 3.2 46 23-70 39-84 (196)
61 1vjr_A 4-nitrophenylphosphatas 20.6 80 0.0027 25.9 3.7 57 14-70 21-77 (271)
No 1
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A
Probab=100.00 E-value=1e-76 Score=549.41 Aligned_cols=270 Identities=39% Similarity=0.661 Sum_probs=251.7
Q ss_pred CccccccccCC-CCcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCC-cCcHHHHHHHcCCCCCCCHHHHH
Q 023655 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSS-ACGSADVLEALGVVIDLDPEGVR 78 (279)
Q Consensus 1 ~~~~~~~~~~~-~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~-~~Gs~dvLe~LGi~~~~~~~~~~ 78 (279)
|++++.+++.. .+++|+|||||||++||||||++|+++|++|+||+|||||+++| ++||+|+||+||+++++++++++
T Consensus 72 m~~~~~~~~~~~~~~vD~~gTGGdg~~tfNiSt~~A~v~Aa~Gv~VakHGnr~~ss~~~GsaDvLeaLGv~~~~~~~~~~ 151 (345)
T 1khd_A 72 LLADAQPFPRPDYDFADIVGTGGDGTNSINISTASAFVAASCGAKVAKHGNRSVCQPLAGSCDLLQAFGIRLDMSAEDSR 151 (345)
T ss_dssp HHHTSCCCCCCSSCCEEEEECCCCSSCBCCCHHHHHHHHHHHTCCEEEEECC---------CHHHHHTTCCTTCCHHHHH
T ss_pred HHHhCCcCCCCCCCeeeecCCCCCCCCccchHHHHHHHHHhCCCcEEEeCCCCCCCCcccHHHHHHhCCCCCCCCHHHHH
Confidence 56777777543 35899999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHhcCeEEEeCCccChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCceEEEEe
Q 023655 79 RCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (279)
Q Consensus 79 ~~l~~~g~~fl~~~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~lvv~ 158 (279)
++|++.||||+|+|.|||+|++++++|++||+||+||+++||+||++++++|+|||||+|.++|+++++.+|.++++|||
T Consensus 152 ~~l~~~gi~fl~a~~~hPa~k~l~~~R~~Lg~rTvfn~lgpL~nPa~~~~~v~GV~~~~~~~~~a~~l~~lG~~~a~vv~ 231 (345)
T 1khd_A 152 QALDDLNVCFLFAPQYHTGFRHAMPVRQQLKTRTIFNVLGPLINPARPPKALIGVYSPELVLPIAQALKVLGYKNAAVVH 231 (345)
T ss_dssp HHHHHHSEEEEEHHHHCGGGGGGHHHHHHHCSCCTHHHHGGGCCTTCCSEEEEECSSGGGHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHCCEEEEehhhhCHHHHHHHHHHHHhCCCCHHHHHHHhcCCcCCCeEEEeecCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccCCCeeEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHH
Q 023655 159 SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERG-AIADALILNAAAALL 237 (279)
Q Consensus 159 GeG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~~-~~~~~v~~naa~~L~ 237 (279)
|||+||+++.++|+|+++++|++++++++|++||++..+++++.++++++|++.++++|+|+.. +++|+|++|||++||
T Consensus 232 GdG~dEis~~~~t~v~~~~~g~i~~~~i~p~~~G~~~~~~~~l~~g~~~e~a~~~~~vL~G~~~~~~~d~v~~naa~~L~ 311 (345)
T 1khd_A 232 GGGMDEVAIHTPTQVAELNNGEIESYQLSPQDFGLQSYSLNALQGGTPEENRDILARLLQGKGDAAHARQVAANVALLLK 311 (345)
T ss_dssp ETTBSSCCSSSCEEEEEEETTEEEEEEECGGGGTCCCBCGGGGBCCSHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred CCCcceecCCCceEEEEEeCCEEEEEEECHHHcCCCcCCccccCCCCHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888999999999999999999999965 899999999999999
Q ss_pred HcCcCCCHHHHHHHHHHHHHccHHHHHHHHHHHH
Q 023655 238 VSCKVNTLAEGVALAREIQLSGKALNTLDLWIEV 271 (279)
Q Consensus 238 ~~g~~~~~~eg~~~a~~~l~sG~a~~~l~~~~~~ 271 (279)
+.|+ +|++||+++|+++|+||+|+++|++|++.
T Consensus 312 ~~g~-~~~~eg~~~A~~~i~sG~A~~~l~~~~~a 344 (345)
T 1khd_A 312 LFGQ-DNLRHNAQLALETIRSGTAFERVTALAAR 344 (345)
T ss_dssp TTTC-CCHHHHHHHHHHHHHHTHHHHHHHHHHTC
T ss_pred HcCC-CCHHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence 9999 99999999999999999999999999853
No 2
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI; 1.85A {Nostoc SP}
Probab=100.00 E-value=5.4e-76 Score=549.59 Aligned_cols=273 Identities=38% Similarity=0.565 Sum_probs=255.0
Q ss_pred Cccccccc--------cCC---CCcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCC
Q 023655 1 MIKYATKV--------EGL---GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVV 69 (279)
Q Consensus 1 ~~~~~~~~--------~~~---~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~ 69 (279)
|++++.++ +.. .+++|+|||||||.+||||||++|+++|++|+||+|||||+++|++||+|+||+||++
T Consensus 86 m~~~~~~~~~~~~~~~~~~~~~~~~vD~~gTGGdg~~tfNiSt~~A~v~Aa~Gv~VaKHGnR~~ss~~GsaDvLEaLGv~ 165 (374)
T 1vqu_A 86 LQSQSKMGTGENYSQLPITNSPFSIIDTCGTGGDGSSTFNISTAVAFVAAAYGVPVAKHGNRSASSLTGSADVLEALGVN 165 (374)
T ss_dssp HHTTCCC-----------CCSSSCCEEEEECC---CCBCCHHHHHHHHHHHTTCCEEEEEECC--CTTCHHHHHHHTTCC
T ss_pred HHHhCCccccccccccCccccCCCeeEEeCCCCCCCCccchHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHhCCCC
Confidence 45666666 332 3589999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEeCCccChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHc
Q 023655 70 IDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRF 149 (279)
Q Consensus 70 ~~~~~~~~~~~l~~~g~~fl~~~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~l 149 (279)
+++++++++++|++.||||+|+|.|||+|++++++|++||+||+||++|||+||+++++||+|||||+|.++|+++++.+
T Consensus 166 ~~~~~e~~~~~l~~~gi~fl~a~~~hPa~k~l~~~R~~lg~rTvfNilgpL~NPa~~~~qv~GV~~~~~~~~~a~~l~~l 245 (374)
T 1vqu_A 166 LGASPEKVQAALQEVGITFLFAPGWHPALKAVATLRRTLRIRTVFNLLGPLVNPLRPTGQVVGLFTPKLLTTVAQALDNL 245 (374)
T ss_dssp TTCCHHHHHHHHHHTSEEEEEETTSSGGGGGGHHHHHHHCSCCHHHHHGGGCCTTCCSEEEEECSCGGGHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHCCEEEEEhHHhCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCceEEeecCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEec-CCccccccCCCeeEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhCCCChhHHH-H
Q 023655 150 GLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIAD-A 227 (279)
Q Consensus 150 g~~~~lvv~G-eG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~~~~~~-~ 227 (279)
|.++++||+| +|+||+++.++|.|+++++|+++++.++|++||++..+++++.++++++++++++++|+|+.++++| +
T Consensus 246 G~~~alVv~G~~G~dE~s~~~~t~v~~~~~g~~~~~~i~p~d~Gl~~~~~~~l~~g~~~e~a~~~~~vL~G~~~~~~d~~ 325 (374)
T 1vqu_A 246 GKQKAIVLHGRERLDEAGLGDLTDLAVLSDGELQLTTINPQEVGVTPAPIGALRGGDVQENAEILKAVLQGKGTQAQQDA 325 (374)
T ss_dssp TCSEEEEEEETTTBSSCCSSSCEEEEEEETTEEEEEEECGGGGTCCCCCGGGGBCCSHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred CCCeEEEEECCCCccccccCCceEEEEEeCCEEEEEEECHHHCCCccccccccCCCCHHHHHHHHHHHHCCCCCchHHHH
Confidence 9999999999 9999999999999999999999999999999999888888888899999999999999999778899 9
Q ss_pred HHHHHHHHHHHcCcCC--CHHHHHHHHHHHHHccHHHHHHHHHHHHhc
Q 023655 228 LILNAAAALLVSCKVN--TLAEGVALAREIQLSGKALNTLDLWIEVSK 273 (279)
Q Consensus 228 v~~naa~~L~~~g~~~--~~~eg~~~a~~~l~sG~a~~~l~~~~~~~~ 273 (279)
|++|||++||+.|+++ |++||+++|+++|+||+|+++|++|++.++
T Consensus 326 v~~naa~~L~~~g~~~~~~~~eg~~~A~~~i~sG~A~~~l~~~v~~~~ 373 (374)
T 1vqu_A 326 VALNAALALQVAGAVPLLDHAQGVSVAKEILQTGTAWAKLAQLVYFLG 373 (374)
T ss_dssp HHHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHhc
Confidence 9999999999999999 999999999999999999999999999864
No 3
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A
Probab=100.00 E-value=3.7e-76 Score=542.88 Aligned_cols=268 Identities=46% Similarity=0.735 Sum_probs=256.9
Q ss_pred CccccccccCC-CCcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCCCHHHHHH
Q 023655 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (279)
Q Consensus 1 ~~~~~~~~~~~-~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~~~~~~~~ 79 (279)
|++++.+++.. .+++|+|||||||.+||||||++|+++|++|+||+|||||+++|++||+|+||+||++++++++++++
T Consensus 59 m~~~~~~~~~~~~~~vD~~gTGGdg~~tfNiSt~~a~v~Aa~Gv~V~kHGnr~~ss~~GsaDvLeaLG~~~~~~~~~~~~ 138 (329)
T 2elc_A 59 MREAARPLRVHRRPLLDIVGTGGDGKGLMNLSTLAALVAAAGGVAVAKHGNRAASSRAGSADLLEALGVDLEAPPERVGE 138 (329)
T ss_dssp HHHHSCCCCCCCSSEEEEEECCCCSSCCCCCHHHHHHHHHHTTCEEEEEECCCTTTTCSHHHHHHHTTCCTTCCHHHHHH
T ss_pred HHHhCCCCCCCCCCeeEEcCCCCCCCCccccHHHHHHHHHhCCCCEEEeCCCCCCCcccHHHHHHhCCCCCCCCHHHHHH
Confidence 56777777553 46899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCeEEEeCCccChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCceEEEEec
Q 023655 80 CVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS 159 (279)
Q Consensus 80 ~l~~~g~~fl~~~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~lvv~G 159 (279)
+|++.||||+|+|.|||+|++++++|++||+||+||++|||+||+++++||+|||||.|.++|+++++.+| ++++||||
T Consensus 139 ~l~~~g~~fl~a~~~hPa~k~~~~~R~~lg~rTvfn~lgpL~nPa~~~~~v~Gv~~~~~~~~~a~~l~~lG-~~alVv~G 217 (329)
T 2elc_A 139 AIEELGFGFLFARVFHPAMRHVAPVRAELGVRTVFNLLGPLTNPAGADAYVLGVFSPEWLAPMAEALERLG-ARGLVVHG 217 (329)
T ss_dssp HHHHHSEEEEEHHHHCGGGGGTHHHHHHHCSCCHHHHHTTTCCTTCCCEEEEECSSGGGHHHHHHHHHHTT-CEEEEEEE
T ss_pred HHHHCCEEEEEhHHhCHHHHHHHHHHHHhCCCCHHHHHHHhcCccCCceeEEeeeCHHHHHHHHHHHHHcC-CCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred CCccccccCCCeeEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHHH
Q 023655 160 EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIADALILNAAAALLV 238 (279)
Q Consensus 160 eG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~-~~~~~~v~~naa~~L~~ 238 (279)
+|+||++ .++|.|+++++|+ +.++|++||++..+++++++++++++++.++++|+|+. ++++|+|++|||++||+
T Consensus 218 ~G~dE~~-~~~t~v~~~~~g~---~~i~p~~~G~~~~~~~~l~~g~~~e~a~~~~~vL~G~~~~~~~d~v~~naa~~L~~ 293 (329)
T 2elc_A 218 EGADELV-LGENRVVEVGKGA---YALTPEEVGLKRAPLEALKGGGPEENAALARRLLKGEEKGPLADAVALAAGAGFYA 293 (329)
T ss_dssp TTBSSCC-SSCEEEEETTTEE---EEECGGGGTCCCCCGGGGCCCSHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred CChhhhc-cCCeEEEEEECCE---EEECHHHcCCccCCcccCCCCCHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHH
Confidence 9999999 9999999988777 88999999999888888889999999999999999986 78899999999999999
Q ss_pred cCcCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhc
Q 023655 239 SCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSK 273 (279)
Q Consensus 239 ~g~~~~~~eg~~~a~~~l~sG~a~~~l~~~~~~~~ 273 (279)
.|+++|++||+++|+++|+||+|+++|++|++.++
T Consensus 294 ~g~~~~~~~g~~~A~~~i~sG~A~~~l~~~~~~~~ 328 (329)
T 2elc_A 294 AGKTPSLKEGVALAREVLASGEAYLLLERYVAFLR 328 (329)
T ss_dssp TTSSSSHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999875
No 4
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=100.00 E-value=1.8e-76 Score=549.10 Aligned_cols=274 Identities=43% Similarity=0.656 Sum_probs=241.5
Q ss_pred CccccccccCC--CCcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCCCHHHHH
Q 023655 1 MIKYATKVEGL--GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVR 78 (279)
Q Consensus 1 ~~~~~~~~~~~--~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~~~~~~~ 78 (279)
|++++.+++.. .+++|+|||||||++||||||++|+++|++|+||+|||||++++++||+|+||+||+++++++++++
T Consensus 65 m~~~~~~v~~~~~~~~vD~~gTGGdg~~t~niSt~~a~v~Aa~G~~V~khG~r~~ss~~GsaD~LeaLG~~~~ls~~~~~ 144 (346)
T 4hkm_A 65 MREFSRRVEVTDRRHMVDIVGTGGDGSHTFNISTCAMFVAAAGGAKVAKHGNRSVSSKSGSADALEALGAVIELQPEQVA 144 (346)
T ss_dssp HHHHSCCCCCSCCTTEEEEECC------CCCHHHHHHHHHHHTTCEEEEEC---------CHHHHHTTTCCCCCCHHHHH
T ss_pred HHHhCCCCCCCCCccceeecCCCCCCccccCcHHHHHHHHHhcCCCeeecCCCCCCCCcCHHHHHHHcCCCcccCHHHHH
Confidence 56677777643 4689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCeEEEeCCccChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCceEEEEe
Q 023655 79 RCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (279)
Q Consensus 79 ~~l~~~g~~fl~~~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~lvv~ 158 (279)
++|++.||||+|+|.|||+|++++++|++||+||+||+++||+||++++++++|||||+|.++|+++++.+|.++++|||
T Consensus 145 ~~l~~~g~~fl~a~~~~Pa~k~l~~~R~~lg~rT~fn~lgpL~nPa~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~a~vv~ 224 (346)
T 4hkm_A 145 ASLAQTGIGFMYAPVHHPAMKVVAPVRREMGVRTIFNILGPLTNPAGSPNILMGVFHPDLVGIQARVLQELGAERALVVW 224 (346)
T ss_dssp HHHHHHSEEEECHHHHCGGGGGTHHHHHHHCSCCTHHHHGGGCCTTCCSEEEEECSSTHHHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHhcCcchhchhhhChhHHHHhhheeccCCCchhhhcccccCCCCCcceEeeccCHHHhHHHHHHHHHcCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCccccccCCCeeEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 023655 159 S-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALL 237 (279)
Q Consensus 159 G-eG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~~~~~~~v~~naa~~L~ 237 (279)
| ||+||+++.++|.++++++|++.++.++|+|||++..+.+++.+++++++++.++++|+|+.++++|+|++|||++||
T Consensus 225 g~~G~dEis~~~~t~v~~~~~g~i~~~~i~P~d~Gl~~~~~~~~~~g~~~e~a~~~~~vl~g~~~~~~d~v~lnaa~~L~ 304 (346)
T 4hkm_A 225 GRDGMDELSLGAGTLVGELRDGQVHEYEVHPEDFGIAMSASRNLKVADAAESRAMLLQVLDNVPGPALDIVALNAGAALY 304 (346)
T ss_dssp ETTTBSSCCSSSCEEEEEEETTEEEEEEECGGGGTCCCCC---------CCHHHHHHHHHTTCCSHHHHHHHHHHHHHHH
T ss_pred cCCCchhhhhccCceEEEEeCCceeEecCCHHHcCCccCcccccCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 9 999999999999999999999999999999999998888888889999999999999999988899999999999999
Q ss_pred HcCcCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcC
Q 023655 238 VSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKV 274 (279)
Q Consensus 238 ~~g~~~~~~eg~~~a~~~l~sG~a~~~l~~~~~~~~~ 274 (279)
+.|+++|++||+++|+++|+||+|+++|++|++++++
T Consensus 305 ~~g~a~sl~eg~~~A~~~l~sG~A~~~l~~~i~~s~~ 341 (346)
T 4hkm_A 305 VAGVADSIADGIVRARQVLADGSARACLDAYVAFTQQ 341 (346)
T ss_dssp HTTSSSSHHHHHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999875
No 5
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=100.00 E-value=8e-75 Score=542.19 Aligned_cols=275 Identities=40% Similarity=0.647 Sum_probs=261.5
Q ss_pred CccccccccCC---CCcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCCCHHHH
Q 023655 1 MIKYATKVEGL---GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGV 77 (279)
Q Consensus 1 ~~~~~~~~~~~---~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~~~~~~ 77 (279)
|++++.+++.. .+++|+|||||||++||||||++|+++|++|+||+|||||+++|++||+|+||+||++++++++++
T Consensus 85 m~~~~~~v~~~~~~~~~vD~~gTGGdg~~T~niSt~~A~v~Aa~Gv~VaKHGnR~~ss~~GsaDvLEaLGv~~~l~~e~~ 164 (377)
T 3r88_A 85 MLSHAHPLPADTVPDDAVDVVGTGGDGVNTVNLSTMAAIVVAAAGVPVVKHGNRAASSLSGGADTLEALGVRIDLGPDLV 164 (377)
T ss_dssp HHHHSCCCCTTCSCTTCEEEEECCCCSCCBCCHHHHHHHHHHHTTCCEEEEECCCSSSSCCHHHHHHHTTCCCCCCHHHH
T ss_pred HHHhCCcCCCccCCCCCeEEeCCCCCCcCccccHHHHHHHHHhcCCeEEeECCCCCCCcccHHHHHHHcCCCcccchHHH
Confidence 56677777542 368999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCeEEEeCCccChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCceEEEE
Q 023655 78 RRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVV 157 (279)
Q Consensus 78 ~~~l~~~g~~fl~~~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~lvv 157 (279)
+++|++.||||+|+|.|||+|++++++|++||+||+||+++||+||+++++|++|||||+|.++|+++++.+| ++++||
T Consensus 165 ~~~l~~~gi~fl~a~~~hPa~k~l~~vR~~Lg~rTifN~lgpL~NPa~~~~~liGv~~~~l~~~~a~~l~~~~-~~a~vv 243 (377)
T 3r88_A 165 ARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARPRAGLIGCAFADLAEVMAGVFAARR-SSVLVV 243 (377)
T ss_dssp HHHHHHHSEEEEEHHHHCGGGHHHHHHHHHHCSCCGGGGHHHHCCTTCCSEEEEECSCTTTHHHHHHHHHHTT-CEEEEE
T ss_pred HHHHHHhccccccchhhCHHHHHHHHHHHHhccCchhhhHHHhcCcccccccccCCCCHHHhHHHHHHHHhcC-CeeEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 599999
Q ss_pred ec-CCccccccCCCeeEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 023655 158 HS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAAL 236 (279)
Q Consensus 158 ~G-eG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~~~~~~~v~~naa~~L 236 (279)
|| ||+||+++.++|.|+++++|++++++++|+|||++..+++++.++++++|+++++++|+|+.++++|.|++|+|++|
T Consensus 244 ~G~dGlDEis~~~~t~v~~~~~g~i~~~~i~P~d~Gl~~~~~~~l~gg~~~ena~~~~~vL~G~~~~~~d~v~lNaa~~l 323 (377)
T 3r88_A 244 HGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPAGFGFARAQLDQLAGGDAQANAAAVRAVLGGARGPVRDAVVLNAAGAI 323 (377)
T ss_dssp EETTSCSSCCSSSCEEEEEEETTEEEEEEECGGGGTCCCCCGGGGBCCSHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHH
T ss_pred cCCCCCceeecccccceEEEeeceeEEEeccccccCCCcCCHHhccCCCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHH
Confidence 99 99999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred HHcCcC-------CCHHHHHHHHHHHHHccHHHHHHHHHHHHhcCCC
Q 023655 237 LVSCKV-------NTLAEGVALAREIQLSGKALNTLDLWIEVSKVNK 276 (279)
Q Consensus 237 ~~~g~~-------~~~~eg~~~a~~~l~sG~a~~~l~~~~~~~~~~~ 276 (279)
|+.|.. +|++||+++|+++|+||+|+++|++|++.+++.+
T Consensus 324 ~~~g~~~~~~~~~~sl~eG~~~A~e~l~sG~A~~kl~~~i~~s~~~~ 370 (377)
T 3r88_A 324 VAHAGLSSRAEWLPAWEEGLRRASAAIDTGAAEQLLARWVRFGRQIL 370 (377)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHTC-
T ss_pred HHhcCccccccccCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 987653 3799999999999999999999999999998754
No 6
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Probab=100.00 E-value=5.8e-75 Score=537.73 Aligned_cols=270 Identities=34% Similarity=0.548 Sum_probs=256.7
Q ss_pred CccccccccCCCCcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCCCCHHHHHHH
Q 023655 1 MIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRC 80 (279)
Q Consensus 1 ~~~~~~~~~~~~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~~~~~~~~~ 80 (279)
|++++.+++.. +++|+|||||||.+||||||++|+++|++ +||+|||||+++|++||+|+||+||+++++++++++++
T Consensus 62 m~~~~~~~~~~-~~vD~~gTGGdg~~tfNiSt~~A~v~Aa~-v~VaKHGnR~~ss~~GsaDvLEaLGv~~~~~~e~~~~~ 139 (345)
T 1o17_A 62 MRELAIKIDVP-NAIDTAGTGGDGLGTVNVSTASAILLSLV-NPVAKHGNRAVSGKSGSADVLEALGYNIIVPPERAKEL 139 (345)
T ss_dssp HHHHSCCCCCT-TCEECCC----CCCBCCHHHHHHHHHTTT-SCEEEEECCCSSSSCSHHHHHHHHTBCCCCCHHHHHHH
T ss_pred HHHhCCCCCCC-CceeeCCCCCCCCCccchHHHHHHHHHHc-CCEEEECCCCCCCcccHHHHHHhCCCCCCCCHHHHHHH
Confidence 56677777544 68999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHhcCeEEEeCCccChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCceEEEEec-
Q 023655 81 VDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS- 159 (279)
Q Consensus 81 l~~~g~~fl~~~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~lvv~G- 159 (279)
|++.||||+|+|.|||+|++++++|++||+||+||++|||+||+++++||+|||||.|.++|+++++.+|.++++||||
T Consensus 140 l~~~gi~fl~a~~~hPa~k~l~~~R~~lg~rTvfN~lgpL~nPa~~~~ql~Gv~~~~~~~~~A~~l~~lG~~~alVv~G~ 219 (345)
T 1o17_A 140 VNKTNFVFLFAQYYHPAMKNVANVRKTLGIRTIFNILGPLTNPANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYGE 219 (345)
T ss_dssp HHHHSEEEEEHHHHCGGGGGTHHHHHHHCSCCGGGGCGGGCCTTCCSEEEEECSSHHHHHHHHHHHTTSCCSEEEEEEET
T ss_pred HHHcCEEEEehHHhChHHHHHHHHHHHhCCCCHHHHHHHhcCccCCCeEEEEeeCHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCeeEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHc
Q 023655 160 EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALLVS 239 (279)
Q Consensus 160 eG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~~~~~~~v~~naa~~L~~~ 239 (279)
+|+||+++.++|.|+++++|+++++.++|++||++..++++++++++++|++.++++|+|+.++++|+|++|||++||+.
T Consensus 220 ~G~dE~s~~~~t~v~~~~~g~~~~~~i~p~d~Gl~~~~~~~l~~g~~~e~a~~~~~vL~G~~~~~~d~v~~naa~~L~~~ 299 (345)
T 1o17_A 220 PGIDEVSPIGNTFMKIVSKRGIEEVKLNVTDFGISPIPIEKLIVNSAEDSAIKIVRAFLGKDEHVAEFIKINTAVALFAL 299 (345)
T ss_dssp TTBSSCCSSSEEEEEEEETTEEEEEEEEGGGGTCCCCCGGGTBCSSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHhcccCCcEEEEEeCCeEEEEEEChhhcCCCCCChhccCCCCHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999888899899999999999999999987788999999999999999
Q ss_pred CcCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcC
Q 023655 240 CKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKV 274 (279)
Q Consensus 240 g~~~~~~eg~~~a~~~l~sG~a~~~l~~~~~~~~~ 274 (279)
|+++|++||+++|+++|+ +|+++|++|++.+++
T Consensus 300 g~~~~~~eg~~~A~~~i~--~A~~~l~~~~~~~~~ 332 (345)
T 1o17_A 300 DRVGDFREGYEYADHLIE--KSLDKLNEIISMNGD 332 (345)
T ss_dssp TSSSSHHHHHHHHHHHHT--THHHHHHHHHHHSBC
T ss_pred CCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHhCC
Confidence 999999999999999999 999999999999875
No 7
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=100.00 E-value=1.9e-52 Score=395.03 Aligned_cols=237 Identities=25% Similarity=0.304 Sum_probs=218.6
Q ss_pred CccccccccCC---CCcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHc-CCCCCCCHHH
Q 023655 1 MIKYATKVEGL---GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDPEG 76 (279)
Q Consensus 1 ~~~~~~~~~~~---~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~L-Gi~~~~~~~~ 76 (279)
|++++.+++.. .+.+|+|||||||++| ||++|+++|++|+||+|||||+++|++||+|+||+| |+++++++++
T Consensus 65 m~~~~~~~~~~~~~~~~vD~~gTGGdG~~t---St~~A~vvAa~Gv~VaKHGnRa~ss~~GsaDvLEaLpGi~~~ls~e~ 141 (436)
T 3h5q_A 65 MVNSGDMIDLSDIKGVKVDKHSTGGVGDTT---TLVLAPLVAAVDVPVAKMSGRGLGHTGGTIDKLEAIDGFHVEIDEAT 141 (436)
T ss_dssp HHTTSCCCCCTTSCSCCEEEEECCCTTCCH---HHHHHHHHHHTTCCEEEECCCCSSSSCCHHHHHTTSTTCCCCCCHHH
T ss_pred HHHhCCcCCccccCCCceeecCCCCCCCCh---HHHHHHHHHhCCCCEEeECCCCCCCcccHHHHHHhCcCCCCCCCHHH
Confidence 56667666543 3689999999999987 999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHhcCeEEEe-CCccChhhhchHHHHhhhCCCChhHhhhhccC--------CCCCCceEEeee--------chhhH
Q 023655 77 VRRCVDEAGIGFMM-STKYHPAMKFVRPVRKKLKVKTVFNILGPMLN--------PACVPFAVVGVY--------NENLV 139 (279)
Q Consensus 77 ~~~~l~~~g~~fl~-~~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlN--------P~~~~~~v~Gv~--------h~~~~ 139 (279)
+.++|++.||+|++ +|.|||+|++++++|++ +||+||+ ||+| |+++.++|+||+ +++..
T Consensus 142 ~~~~l~~~g~~fl~~a~~~~Pa~~~l~~lR~~--~~Tvfni--PLinaSimSKKlpag~~~~vlgV~~G~gaf~~~~~~a 217 (436)
T 3h5q_A 142 FVKLVNENKVAVVGQSGNLTPADKKLYALRDV--TGTVNSI--PLIASSIMSKKIAAGADAIVLDVKTGSGAFMKTLEDA 217 (436)
T ss_dssp HHHHHHHHSEEEECCCSSSCHHHHHHHHHHHT--TTCSSCH--HHHHHHHHHHHHHTTCSEEEEEEEESTTSSBCSHHHH
T ss_pred HHHHHHHcCCEEEccccccCHHHHHHHHHHhc--cCCcCCh--hhhccchhccccccCCCeEEEeeecCccccCCCHHHH
Confidence 99999999999998 69999999999999999 7899999 9999 999999999999 99999
Q ss_pred HHHHHHHHHcCCceEEEEecCCccccccCCCeeEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhCC
Q 023655 140 LKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSG 219 (279)
Q Consensus 140 ~~~a~~~~~lg~~~~lvv~GeG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G 219 (279)
+.+++++..+|.+. ++|.+++++++. +| ||+. ++++.++++ ++++|+|
T Consensus 218 ~~lA~~l~~lG~~~---------------G~~~v~~lt~~~------~P--lG~~--------~G~~~E~ae-~~~vL~G 265 (436)
T 3h5q_A 218 EALAHAMVRIGNNV---------------GRNTMAIISDMN------QP--LGRA--------IGNALELQE-AIDTLKG 265 (436)
T ss_dssp HHHHHHHHHHHHHH---------------TCCEEEEEEECS------SC--SSSE--------EESHHHHHH-HHHHHTT
T ss_pred HHHHHHHHHhhhhc---------------CCeEEEEEcCCC------CC--CCCC--------CCCHHHHHH-HHHHHCC
Confidence 99999999998642 678888888776 45 7763 568899999 9999999
Q ss_pred CC-hhHHHHHHHHHHHHHHHcCcCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcCCC
Q 023655 220 ER-GAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKVNK 276 (279)
Q Consensus 220 ~~-~~~~~~v~~naa~~L~~~g~~~~~~eg~~~a~~~l~sG~a~~~l~~~~~~~~~~~ 276 (279)
+. .++.|.|++|||.+|++.|.+++++||+++|+++|+||+|+++|++|+++|++|.
T Consensus 266 ~~~~~~~d~vl~nAa~~L~~ag~a~~~~eg~~~A~~~i~sG~A~~~l~~~v~~qGg~~ 323 (436)
T 3h5q_A 266 QGPKDLTELVLTLGSQMVVLANKAETLEEARALLIEAINSGAALEKFKTFIKNQGGDE 323 (436)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTTSCSSHHHHHHHHHHHHHTSHHHHHHHHHHHHTTCCT
T ss_pred CCCccHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhCcHHHHHHHHHHHHhCCCc
Confidence 94 6899999999999999999999999999999999999999999999999999875
No 8
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=100.00 E-value=1.8e-51 Score=387.02 Aligned_cols=236 Identities=21% Similarity=0.245 Sum_probs=210.5
Q ss_pred CccccccccCCC--CcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHc-CCCCCCCHHHH
Q 023655 1 MIKYATKVEGLG--DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDPEGV 77 (279)
Q Consensus 1 ~~~~~~~~~~~~--~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~L-Gi~~~~~~~~~ 77 (279)
|++++.+++... .++|+|||||||. ||||++|+++|++|+||+|||||+++|++||+|+||+| |++++++++++
T Consensus 62 M~~~~~~l~~~~~~~~vD~~gTGGdG~---niSt~~a~vvAa~Gv~VaKhGnR~~ss~~GsaDvLEaL~Gv~i~l~~e~~ 138 (423)
T 2dsj_A 62 MARSGKVLDLSGLPHPVDKHSSGGVGD---KVSLVVGPILAASGCTFAKMSGRGLAHTGGTIDKLESVPGWRGEMTEAEF 138 (423)
T ss_dssp HHTSSBCCCCTTSSSBEEEEEESSSCC---STHHHHHHHHHTTTCBEEEECCCCBTTBCCHHHHHTTSTTCCCCCCHHHH
T ss_pred HHHhCCcCCccccCCceeEecCCCCCc---cHHHHHHHHHHhCCCcEEEECCCCCCCCccHHHHHHhCCCCCCCCCHHHH
Confidence 567777775432 2899999999998 79999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHhcCeEEEeC-CccChhhhchHHHHhhhC-CCChhHhhhhccC---CCCCCceEE------eee--chhhHHHHHH
Q 023655 78 RRCVDEAGIGFMMS-TKYHPAMKFVRPVRKKLK-VKTVFNILGPMLN---PACVPFAVV------GVY--NENLVLKMAN 144 (279)
Q Consensus 78 ~~~l~~~g~~fl~~-~~~~Pal~~l~~lR~~lg-~Rt~~ntl~pLlN---P~~~~~~v~------Gv~--h~~~~~~~a~ 144 (279)
.+++++.||||+++ +.|||+|++++++|+++| +||+||+++||+| |+++.++|+ |+| ++++.+.+++
T Consensus 139 ~~~l~~~Gi~f~~~~~~~~PA~k~l~~lR~~lgtv~Ti~nilgpl~nkK~pag~~~~vldV~~G~Gaf~~~~~~~~~lA~ 218 (423)
T 2dsj_A 139 LERARRVGLVIAAQSPDLAPLDGKLYALRDVTATVESVPLIASSIMSKKLAAGARSIVLDVKVGRGAFMKTLEEARLLAK 218 (423)
T ss_dssp HHHHHHTSEEEESCGGGBSHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTCSEEEEEEEESSSTTCBCHHHHHHHHH
T ss_pred HHHHHHcCEEEEecccccChHHHHHHHHHHHhcccCcHHHhHHHHhcCccCCCCCeEEEEeccCCCcccCCHHHHHHHHH
Confidence 99999999999877 899999999999999999 7999999999999 999999999 669 9999999999
Q ss_pred HHHHcCCceEEEEecCCccccccCCCeeEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhCCCC-hh
Q 023655 145 ALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GA 223 (279)
Q Consensus 145 ~~~~lg~~~~lvv~GeG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~-~~ 223 (279)
++..+|.+ .+.+.++++++++ +++|+ .+++++++++.++ +|+|+. .+
T Consensus 219 ~l~~lg~~---------------~G~~~v~~l~dg~--------~plg~--------~~G~a~E~ae~i~-vL~G~g~~~ 266 (423)
T 2dsj_A 219 TMVAIGQG---------------AGRRVRALLTSME--------APLGR--------AVGNAIEVREAIE-ALKGEGPGD 266 (423)
T ss_dssp HHHHHHHH---------------TTCEEEEEEEECS--------SCSSS--------EEESHHHHHHHHH-HHTTCSCHH
T ss_pred HHHHHHHH---------------cCCeEEEEEcCCC--------Ccccc--------cCCCHHHHHHHHH-HHCCCCchh
Confidence 99998853 2567777877665 23443 3578999999885 999985 46
Q ss_pred HHHHHHHHHHHHHHHcCcCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcCCCc
Q 023655 224 IADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKVNKT 277 (279)
Q Consensus 224 ~~~~v~~naa~~L~~~g~~~~~~eg~~~a~~~l~sG~a~~~l~~~~~~~~~~~~ 277 (279)
++|.|++|||.+||+.|+ |+ ++|+++|+||+|+++|++|+++|++|..
T Consensus 267 ~~d~vl~nAa~~L~~ag~--~l----~~A~~~l~sG~A~~kl~~li~~~~g~~~ 314 (423)
T 2dsj_A 267 LLEVALALAEEALRLEGL--DP----ALARKALEGGAALEKFRAFLEAQGGDPR 314 (423)
T ss_dssp HHHHHHHHHHHHHHHTTC--CT----HHHHHHHHTSHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHHHHcCC--CH----HHHHHHHhcCcHHHHHHHHHHHhCCChh
Confidence 899999999999999998 55 8999999999999999999999998753
No 9
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=100.00 E-value=2.3e-50 Score=381.59 Aligned_cols=234 Identities=23% Similarity=0.311 Sum_probs=209.5
Q ss_pred CccccccccCC---CCcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHc-CCCCCCCHHH
Q 023655 1 MIKYATKVEGL---GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDPEG 76 (279)
Q Consensus 1 ~~~~~~~~~~~---~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~L-Gi~~~~~~~~ 76 (279)
|++++.+++.. .+.+|+|||||||.+ |||++|+++|++|+||+|||||++++++||+|+||+| |+++++++++
T Consensus 62 M~~~~~~v~~~~~~~~~vD~~gTGGdG~~---iSt~~A~vvAa~Gv~VaKHGnRa~ss~~GsaDvLEaL~Gv~i~ls~e~ 138 (433)
T 1brw_A 62 MVQSGEMLDLSSIRGVKVDKHSTGGVGDT---TTLVLGPLVASVGVPVAKMSGRGLGHTGGTIDKLESVPGFHVEISKDE 138 (433)
T ss_dssp HHHTSCCCCCTTSCSCCEEEEECCCSSCC---HHHHHHHHHHTTTCCEEEEECCCBTTBCCHHHHHTTSTTCCCCCCHHH
T ss_pred HHHhCCcCCcccccCCceeeCCCCCCCcc---hHHHHHHHHHhCCCcEEEECCCCCCCCCCHHHHHHHCcCceecCCHHH
Confidence 56677776543 258999999999996 8999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHhcCeEEEeC-CccChhhhchHHHHhhhCCCChhHhhhhccCC--------CCCCceEEee------e------c
Q 023655 77 VRRCVDEAGIGFMMS-TKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP--------ACVPFAVVGV------Y------N 135 (279)
Q Consensus 77 ~~~~l~~~g~~fl~~-~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP--------~~~~~~v~Gv------~------h 135 (279)
+.+++++.||||+++ +.|||+|++++++|+++ ||+||+ ||+|| .+++++|+|| | |
T Consensus 139 ~~~~l~~~Gi~fl~a~~~~hPA~k~l~~lR~~l--rTvfNi--PLin~s~lskklA~G~~~~VlgVk~G~gaf~~~~de~ 214 (433)
T 1brw_A 139 FIRLVNENGIAIIGQTGDLTPADKKLYALRDVT--ATVNSI--PLIASSIMSKKIAAGADAIVLDVKTGAGAFMKKLDEA 214 (433)
T ss_dssp HHHHHHHHSEEEEECCTTSCHHHHHHHHHHHHH--TCCCCH--HHHHHHHHHHHHHHCCSEEEEEEEESTTSSCCSHHHH
T ss_pred HHHHHHHcCeeEecCchhhCHHHHHHHHHHHhh--CCccCh--hhcCcHhhHHHHhcCCCEEEEEeecccccccCCHHHH
Confidence 999999999999999 59999999999999999 899999 99999 6888999999 8 8
Q ss_pred hhhHHHHHHHHHHcCCceEEEEecCCccccccCCCeeEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 023655 136 ENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRR 215 (279)
Q Consensus 136 ~~~~~~~a~~~~~lg~~~~lvv~GeG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~ 215 (279)
+.+.+.+.++++.+|.++..++++ ++ +++|. .++++.++++. ++
T Consensus 215 ~~l~~~~v~~~~~~G~~~~~~i~~--~~-------------------------~plg~--------~~G~a~E~a~~-~~ 258 (433)
T 1brw_A 215 RRLARVMVDIGKRVGRRTMAVISD--MS-------------------------QPLGY--------AVGNALEVKEA-IE 258 (433)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEE--CS-------------------------SCSSS--------EESSHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHcCCEEEEEEcC--CC-------------------------Ccccc--------cCCCHHHHHHH-HH
Confidence 899999999999999877777773 11 22332 14678899865 99
Q ss_pred HhCCCC-hhHHHHHHHHHHHHHHHcCcCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcCCCc
Q 023655 216 VLSGER-GAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKVNKT 277 (279)
Q Consensus 216 vL~G~~-~~~~~~v~~naa~~L~~~g~~~~~~eg~~~a~~~l~sG~a~~~l~~~~~~~~~~~~ 277 (279)
+|+|+. .+++|.|++|||.+||+.|+++|++||+++|+++|+||+|+++|++|+++|++|..
T Consensus 259 vL~G~g~~~~~d~vl~nAa~~L~~~g~a~~~~eg~~~A~~~i~sG~A~~kl~~~i~~~~g~~~ 321 (433)
T 1brw_A 259 TLKGNGPHDLTELCLTLGSHMVYLAEKAPSLDEARRLLEEAIRSGAAIAAFKTFLAAQGGDAS 321 (433)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHTTSSSSHHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCGG
T ss_pred HHCCCCChhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcChHHHHHHHHHHHhCCChh
Confidence 999985 46889999999999999999999999999999999999999999999999998753
No 10
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=100.00 E-value=4e-50 Score=382.70 Aligned_cols=233 Identities=24% Similarity=0.288 Sum_probs=210.3
Q ss_pred CccccccccCCC----CcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHc-CCCCCCCHH
Q 023655 1 MIKYATKVEGLG----DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDPE 75 (279)
Q Consensus 1 ~~~~~~~~~~~~----~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~L-Gi~~~~~~~ 75 (279)
|++++.+++... +.+|+|||||||.+ |||++|+++|++|+||+|||||+++|++||+|+||+| |++++++++
T Consensus 89 Mr~~~~~v~~~~~~~~~~vD~~gTGGdG~~---iSt~~A~vvAa~Gv~VaKHGnRa~ss~~GSaDvLEaLpGv~i~ls~e 165 (474)
T 1uou_A 89 LAQSGQQLEWPEAWRQQLVDKHSTGGVGDK---VSLVLAPALAACGCKVPMISGRGLGHTGGTLDKLESIPGFNVIQSPE 165 (474)
T ss_dssp HHTTSCCCCCCGGGGGGBEEEEESCCTTCC---HHHHHHHHHHTTTCBEEEECCCCBTTBCCHHHHHTTSTTCCCCCCHH
T ss_pred HHHhCCcCCcccccCCCeeEeCCCCCCCce---eHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHhCCCCCCCCCHH
Confidence 567777765432 58999999999998 8999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHhcCeEEEeC-CccChhhhchHHHHhhhCCCChhHhhhhccCC--------CCCCceEEee------e------
Q 023655 76 GVRRCVDEAGIGFMMS-TKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP--------ACVPFAVVGV------Y------ 134 (279)
Q Consensus 76 ~~~~~l~~~g~~fl~~-~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP--------~~~~~~v~Gv------~------ 134 (279)
++.+++++.||||+++ +.|||+|++++++|++ +||+||+ ||+|| .++.++|+|| |
T Consensus 166 ~~~~~l~~~Gi~fl~a~~~~hPA~k~l~~lR~~--lrTvfNi--PLinpsi~skklA~g~~~~VlgVk~G~gafm~~lde 241 (474)
T 1uou_A 166 QMQVLLDQAGCCIVGQSEQLVPADGILYAARDV--TATVDSL--PLITASILSKKLVEGLSALVVDVKFGGAAVFPNQEQ 241 (474)
T ss_dssp HHHHHHHHHSEEEECCCSSSSHHHHHHHHHHHH--TTCSSCH--HHHHHHHHHHHHHTTCSEEEEEEEEC--CCCCSHHH
T ss_pred HHHHHHHHcCeEEecCchhhCHHHHHHHHHHhh--hCCccch--hhcCcHHHHHHHhhcCCeEEEEeccccccccCCHHH
Confidence 9999999999999999 6999999999999999 4999999 99999 7889999999 8
Q ss_pred chhhHHHHHHHHHHcCCceEEEEecCCccccccCCCeeEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 023655 135 NENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLR 214 (279)
Q Consensus 135 h~~~~~~~a~~~~~lg~~~~lvv~GeG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~ 214 (279)
|+.+.+.|.++++.+|.++.++|++ ++ .++|. . ++++.++++. .
T Consensus 242 ~~~la~~~v~~~~~~G~~~~~vitd--~~-------------------------~plg~-------~-~G~a~E~ae~-~ 285 (474)
T 1uou_A 242 ARELAKTLVGVGASLGLRVAAALTA--MD-------------------------KPLGR-------C-VGHALEVEEA-L 285 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEE--CS-------------------------SCSTT-------E-ESSHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEec--CC-------------------------Ccccc-------c-CCCHHHHHHH-H
Confidence 8999999999999999988888884 22 11221 1 4688999975 5
Q ss_pred HHhCCCC-hhHHHHHHHHHHHHHHHcCcCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcCCC
Q 023655 215 RVLSGER-GAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKVNK 276 (279)
Q Consensus 215 ~vL~G~~-~~~~~~v~~naa~~L~~~g~~~~~~eg~~~a~~~l~sG~a~~~l~~~~~~~~~~~ 276 (279)
++|+|+. .+++|+|++|||.+||+.|+++|++||+++|+++|+||+|+++|++|+++|++|+
T Consensus 286 ~vL~G~g~~~~~d~vl~nAa~~L~~aG~a~~~~eg~~~A~e~i~sG~A~~kl~~li~~~~g~~ 348 (474)
T 1uou_A 286 LCMDGAGPPDLRDLVTTLGGALLWLSGHAGTQAQGAARVAAALDDGSALGRFERMLAAQGVDP 348 (474)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHSSHHHHHHHHHHHHTTCCH
T ss_pred HHHCCCCchhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcChHHHHHHHHHHHhCCCc
Confidence 9999996 6789999999999999999999999999999999999999999999999999865
No 11
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=100.00 E-value=1.1e-50 Score=384.34 Aligned_cols=245 Identities=23% Similarity=0.246 Sum_probs=195.6
Q ss_pred CccccccccCCC-----CcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHc-CCCCCCCH
Q 023655 1 MIKYATKVEGLG-----DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDP 74 (279)
Q Consensus 1 ~~~~~~~~~~~~-----~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~L-Gi~~~~~~ 74 (279)
|++++.+++... +++|+|||||||.+ |||++|+++|++|+||+|||||+++|++||+|+||+| |+++++++
T Consensus 63 m~~~~~~~~~~~~~~~~~~vD~~gTGGdG~~---iSt~~A~vvAa~Gv~VaKHGnR~~ss~~GsaDvLEaL~Gv~~~ls~ 139 (440)
T 2tpt_A 63 MRDSGTVLDWKSLHLNGPIVDKHSTGGVGDV---TSLMLGPMVAACGGYIPMISGRGLGHTGGTLDKLESIPGFDIFPDD 139 (440)
T ss_dssp HHHTSBCCCCTTTTCSSCBEEEEECCCSSCC---HHHHHHHHHHHTTCBEEEEECCCCTTSCCHHHHHTTSTTCCSCCCH
T ss_pred HHHhCCcCCCcccccCCCeeeeCCCCCCCcc---HHHHHHHHHHhCCCcEEEECCCCCCCcccHHHHHHhCcCCCCCCCH
Confidence 456666665432 58999999999997 8999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHhcCeEEEeC-CccChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCce
Q 023655 75 EGVRRCVDEAGIGFMMS-TKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKR 153 (279)
Q Consensus 75 ~~~~~~l~~~g~~fl~~-~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~ 153 (279)
+++.+++++.||||+++ +.|||+|++++++|+++ ||+||+ ||+|| +.+.+++++ |.+
T Consensus 140 e~~~~~l~~~G~~fl~a~~~~hPA~k~l~~lR~~l--rTvfNi--PLin~------------s~lskk~A~-----G~~- 197 (440)
T 2tpt_A 140 NRFREIIKDVGVAIIGQTSSLAPADKRFYATRDIT--ATVDSI--PLITA------------SILAKKLAE-----GLD- 197 (440)
T ss_dssp HHHHHHHHHTSEEEEECCTTBSHHHHHHHHHHHHT--TCCCCH--HHHHH------------HHHHHHHTT-----CCS-
T ss_pred HHHHHHHHHcCEEEEcCchhhCHHHHHHHHHHHhh--CCccCh--hhcCC------------HHHHHHHhc-----CCC-
Confidence 99999999999999999 89999999999999999 899999 99997 233333332 554
Q ss_pred EEEE---ecC-----CccccccCCCeeEEEEeC-CeEEEEEeCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhCCCC--h
Q 023655 154 ALVV---HSE-----GLDEMSPLGPGLILDVTQ-EKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER--G 222 (279)
Q Consensus 154 ~lvv---~Ge-----G~dE~s~~~~t~v~~~~~-g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~--~ 222 (279)
++|+ +|. |+||+++.+++.++...+ |......++..+ .++... ++++.++++. +++|+|+. .
T Consensus 198 alVvdVk~G~gaf~~~~de~~~la~t~v~~~~~~G~~~~a~itd~~-----~plg~~-~G~a~E~ae~-~~vL~G~g~~~ 270 (440)
T 2tpt_A 198 ALVMDVKVGSGAFMPTYELSEALAEAIVGVANGAGVRTTALLTDMN-----QVLASS-AGNAVEVREA-VQFLTGEYRNP 270 (440)
T ss_dssp EEEEEEEESTTSSSSSHHHHHHHHHHHHHHHHHTTCEEEEEEEECS-----SCSSSC-EESHHHHHHH-HHHHHTSCCCH
T ss_pred eEEEEeccCCccccCCHHHHHHHHHHHHHHHHHcCCceEEEecCCC-----Cchhhc-CCCHHHHHHH-HHHHCCCCCch
Confidence 5555 552 456665554443322110 111111111000 223333 5689999987 99999984 3
Q ss_pred hHHHHHHHHHHHHHHHcCcCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhcCCCc
Q 023655 223 AIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKVNKT 277 (279)
Q Consensus 223 ~~~~~v~~naa~~L~~~g~~~~~~eg~~~a~~~l~sG~a~~~l~~~~~~~~~~~~ 277 (279)
+++|.|++|||.+||+.|+++|++||+++|+++|+||+|+++|++|+++|++|..
T Consensus 271 ~~~d~vl~nAa~~L~~ag~a~~~~eg~~~A~~~i~sG~A~~kl~~~v~~~~g~~~ 325 (440)
T 2tpt_A 271 RLFDVTMALCVEMLISGKLAKDDAEARAKLQAVLDNGKAAEVFGRMVAAQKGPTD 325 (440)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSSHHHHHHHHHHHHHTSHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcChHHHHHHHHHHHhCCChh
Confidence 5789999999999999999999999999999999999999999999999998753
No 12
>4ex8_A ALNA; alpha/beta/alpha-domain, C-glycosynthase, divalent metal ION ligase; 2.10A {Streptomyces SP} PDB: 4ex9_A*
Probab=70.59 E-value=3.1 Score=37.09 Aligned_cols=124 Identities=21% Similarity=0.188 Sum_probs=81.3
Q ss_pred eeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCc------HHHHHHH---------cCCCCCCCHHHHHHH
Q 023655 16 DIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACG------SADVLEA---------LGVVIDLDPEGVRRC 80 (279)
Q Consensus 16 D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~G------s~dvLe~---------LGi~~~~~~~~~~~~ 80 (279)
-++..|.+|..| -....++...+|++|+-.|+-+-=.+.+ |+|+-|- -|++.-++.....+.
T Consensus 104 ~~~a~g~~GaTT---VaaTm~lA~~AGI~VFaTGGiGGVHRgae~t~DISaDL~eLarTpV~VVcaG~KsILDi~~TLE~ 180 (316)
T 4ex8_A 104 GALAGGGLGATT---VAGTIVIAERAGIQVFTTAGIGGVHRRGEDTLDISPDLLQFRKTKMTVVSGGAKSILDHRLTAEY 180 (316)
T ss_dssp HHHHHCSCBEEC---HHHHHHHHHHHTCCEEECSCBCCBBTTHHHHCCBCTHHHHTTTCCEEEEESBBCTTBCHHHHHHH
T ss_pred HHHhCCCCcccc---HHHHHHHHHHCCCcEEEeCCccccCCCCCCCcchhhhHHHhcCCCeEEEecccchhhcchHHHHH
Confidence 345678888875 3344566667799999999866222322 6777663 267777899999999
Q ss_pred HHhcCeEEEe-CCccChhh------------------hchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHH
Q 023655 81 VDEAGIGFMM-STKYHPAM------------------KFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLK 141 (279)
Q Consensus 81 l~~~g~~fl~-~~~~~Pal------------------~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~ 141 (279)
||..|+..+. ....+|++ .+++..+++||+++-. -+.||....+.+-+- .....
T Consensus 181 LET~GV~Vvgy~td~fPaFy~r~Sg~~~pr~d~~~e~A~~~~a~~~lgl~~g~----lvanPiP~e~~~~~~---~i~~~ 253 (316)
T 4ex8_A 181 LETAGVPVYGYRTDKLAAFVVREADVPVTRMDDLHTAARAAEAHWQVNGPGTV----LLTSPIDEQDAVDEA---IVEAA 253 (316)
T ss_dssp HHHTTCCEEEETCSBCCBTTBSCCSCBCEEESSHHHHHHHHHHHHHHHCSCEE----EEECCCCGGGCCCHH---HHHHH
T ss_pred HHhCCceEEEecCCCCceeeeCCCCCcCCCCCCHHHHHHHHHHHHHhCCCCeE----EEEcCCChhhcCCHH---HHHHH
Confidence 9999998763 35555643 3566778888886642 567888777764332 23344
Q ss_pred HHHHHHHc
Q 023655 142 MANALQRF 149 (279)
Q Consensus 142 ~a~~~~~l 149 (279)
+.++++..
T Consensus 254 I~~Al~eA 261 (316)
T 4ex8_A 254 IAEALAQC 261 (316)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44555443
No 13
>4gim_A Pseudouridine-5'-phosphate glycosidase; alpha-beta-alpha sandwich fold, hydrolase; HET: PSU; 1.80A {Escherichia coli} PDB: 4gij_A 4gik_A* 4gil_A*
Probab=65.83 E-value=10 Score=34.01 Aligned_cols=108 Identities=27% Similarity=0.291 Sum_probs=73.1
Q ss_pred eecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCc------HHHHHHH---------cCCCCCCCHHHHHHHH
Q 023655 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACG------SADVLEA---------LGVVIDLDPEGVRRCV 81 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~G------s~dvLe~---------LGi~~~~~~~~~~~~l 81 (279)
++..|.+|..| -....+++..+|++|+-.|+-+-=.|.+ |+|+-|- -|++.-++.....+.|
T Consensus 125 ~~a~~~~GaTT---VaaTm~lA~~AGI~VFaTGGIGGVHRgae~t~DISADL~eLarTpV~VVcAG~KSILDi~~TLE~L 201 (335)
T 4gim_A 125 VVAAGKNGATT---VASTMIIAALAGIKVFATGGIGGVHRGAEHTFDISADLQELANTNVTVVCAGAASILDLGLTTEYL 201 (335)
T ss_dssp HHHTTCCEEEC---HHHHHHHHHHTTCCEEECSCCCCBBTTHHHHCCBCHHHHHHHHSCCEEEECBCCTTBCHHHHHHHH
T ss_pred HhhcCCCcccc---HHHHHHHHHHCCCcEEeeCCcCccCCCCCCCccccchHHHhccCCeEEEeecchhhccchhHHHHH
Confidence 34667888765 3345566777899999999866333322 6787764 2666668899999999
Q ss_pred HhcCeEEEe-CCccChhh-------------------hchHHHHhhhCCCChhHhhhhccCCCCCCceEE
Q 023655 82 DEAGIGFMM-STKYHPAM-------------------KFVRPVRKKLKVKTVFNILGPMLNPACVPFAVV 131 (279)
Q Consensus 82 ~~~g~~fl~-~~~~~Pal-------------------~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~ 131 (279)
|..|+..+. .....|++ .+++..|++||+.+-. -+.||....+++-
T Consensus 202 ET~GVpVvgy~td~fPaFy~r~Sg~~~~~rvd~~~e~A~i~~~~~~lgl~~g~----lvanPIP~e~~i~ 267 (335)
T 4gim_A 202 ETFGVPLIGYQTKALPAFFCRTSPFDVSIRLDSASEIARAMVVKWQSGLNGGL----VVANPIPEQFAMP 267 (335)
T ss_dssp HHTTCCEEEETCSBCCBTTBSCCSSBCSEEECCHHHHHHHHHHHHHTTCCSCE----EEECCCCGGGCCC
T ss_pred HhcCceEEEecCCCCceeeccCCCCcCcceeCCHHHHHHHHHHHHHcCCCCce----EEeCCCCchhcCC
Confidence 999987663 34445544 2356678888886532 5678887777653
No 14
>1vkm_A Conserved hypothetical protein TM1464; indigoidine synthase A-like fold, structural genomics, joint for structural genomics, JCSG; HET: MSE UNL; 1.90A {Thermotoga maritima} SCOP: c.138.1.1
Probab=56.03 E-value=34 Score=30.12 Aligned_cols=116 Identities=22% Similarity=0.279 Sum_probs=75.8
Q ss_pred eecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCc---HHHHHHH---------cCCCCCCCHHHHHHHHHhc
Q 023655 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACG---SADVLEA---------LGVVIDLDPEGVRRCVDEA 84 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~G---s~dvLe~---------LGi~~~~~~~~~~~~l~~~ 84 (279)
++..|.+|..| -....+++..+|++|+-.|+-+-=.+.. |+|+-|- -|++.-++.....+.||..
T Consensus 98 ~~a~g~~GaTT---VaaTm~lA~~AGI~VFaTGGiGGVHRgt~DISaDL~eL~rTpV~VVcaG~KsILDi~~TLE~LET~ 174 (297)
T 1vkm_A 98 VVAEGKNAATT---VSATIFLSRRIGIEVVVTGGTGGVHPGRVDVSQDLTEMSSSRAVLVSSGIKSILDVEATFEMLETL 174 (297)
T ss_dssp HHHHTCCEEEC---HHHHHHHHHHHTCCEEECSCBCCBCTTSSCBCHHHHHHTTCCEEEEESBBCTTSCHHHHHHHHHHT
T ss_pred HHhCCCCchhh---HHHHHHHHHHcCCcEEEecccccccCCCcccchhHHHhcCCCeEEEecccchhhcchhHHHHHHhC
Confidence 45668888765 2334556667799999998855222222 7887773 3666668889999999999
Q ss_pred CeEEEe-CCccChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHcCCceEEEEe
Q 023655 85 GIGFMM-STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (279)
Q Consensus 85 g~~fl~-~~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~lvv~ 158 (279)
|+..+. ....+|++.. +.-|++.+ -+-+|+-...+..+-..+|.+.+++|-
T Consensus 175 GV~Vvgy~t~~fPaF~t-----r~Sg~~~p------------------~~d~~~e~A~~~~~~~~lgl~~g~lva 226 (297)
T 1vkm_A 175 EIPLVGFRTNEFPLFFS-----RKSGRRVP------------------RIENVEEVLKIYESMKEMELEKTLMVL 226 (297)
T ss_dssp TCCEEEESCSBCCBTTB-----SCCSCBCC------------------EECSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CceEEEecCCCCCceec-----CCCCCcCC------------------CCCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 987664 3667777632 12232221 355666666666677788887777754
No 15
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=42.58 E-value=18 Score=31.61 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=27.6
Q ss_pred CcceeecC-CCCCCCcccchHHHHHHHHcCCCcEEeeCCC
Q 023655 13 DAVDIVGT-GGDGANTVNISTGASILAAACGAKVAKQGSR 51 (279)
Q Consensus 13 ~~~D~~gt-ggdG~~t~nis~~aA~vlA~~G~~V~kHG~~ 51 (279)
.+|=++|+ ||.|+.| ++...|..+|+.|.+|+.--.+
T Consensus 105 kvI~vts~kgG~GKTt--va~nLA~~lA~~G~rVLLID~D 142 (299)
T 3cio_A 105 NILMITGATPDSGKTF--VSSTLAAVIAQSDQKVLFIDAD 142 (299)
T ss_dssp CEEEEEESSSSSCHHH--HHHHHHHHHHHTTCCEEEEECC
T ss_pred eEEEEECCCCCCChHH--HHHHHHHHHHhCCCcEEEEECC
Confidence 45656775 7889886 5666788889999999986543
No 16
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=42.11 E-value=11 Score=33.53 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=24.6
Q ss_pred eecCCCCCCCcccchHHHHHHHHcCCCcEEe
Q 023655 17 IVGTGGDGANTVNISTGASILAAACGAKVAK 47 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~k 47 (279)
+.|-||.|+.| ++...|..+|+.|.+|+.
T Consensus 24 ~sgkGGvGKTT--va~~LA~~lA~~G~rVll 52 (329)
T 2woo_A 24 VGGKGGVGKTT--TSCSLAIQMSKVRSSVLL 52 (329)
T ss_dssp EECSSSSSHHH--HHHHHHHHHHTSSSCEEE
T ss_pred EeCCCCCcHHH--HHHHHHHHHHHCCCeEEE
Confidence 56779999986 677788899999999997
No 17
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=41.35 E-value=11 Score=32.52 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=27.0
Q ss_pred cceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCC
Q 023655 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (279)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~ 50 (279)
.|=++|-||.|+.| ++...|..+|..|.+|+.--.
T Consensus 43 vI~v~~KGGvGKTT--~a~nLA~~La~~G~~VlliD~ 77 (307)
T 3end_A 43 VFAVYGKGGIGKST--TSSNLSAAFSILGKRVLQIGC 77 (307)
T ss_dssp EEEEECSTTSSHHH--HHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEECCCCccHHH--HHHHHHHHHHHCCCeEEEEeC
Confidence 45567999999986 455667888899999987433
No 18
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=39.12 E-value=13 Score=32.94 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=29.3
Q ss_pred CcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCC
Q 023655 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRS 52 (279)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~ 52 (279)
.+|=|.|=||.|+.| ++.=+|..||..|.+|+.-.-+-
T Consensus 49 KVIAIaGKGGVGKTT--tavNLA~aLA~~GkkVllID~Dp 86 (314)
T 3fwy_A 49 KVFAVYGKGGIGKST--TSSNLSAAFSILGKRVLQIGCDP 86 (314)
T ss_dssp EEEEEECSTTSSHHH--HHHHHHHHHHHTTCCEEEEEESS
T ss_pred eEEEEECCCccCHHH--HHHHHHHHHHHCCCeEEEEecCC
Confidence 456678999999985 23345778899999999877663
No 19
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=38.70 E-value=18 Score=32.32 Aligned_cols=46 Identities=24% Similarity=0.234 Sum_probs=34.0
Q ss_pred cceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHH
Q 023655 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLE 64 (279)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe 64 (279)
++=+.|-||.|+.| ++...|..+|..|.+|+.-..+ +..+..+.|.
T Consensus 18 i~~~sgkGGvGKTt--~a~~lA~~la~~g~~vllid~D---~~~~l~~~l~ 63 (334)
T 3iqw_A 18 WIFVGGKGGVGKTT--TSCSLAIQLAKVRRSVLLLSTD---PAHNLSDAFS 63 (334)
T ss_dssp EEEEECSTTSSHHH--HHHHHHHHHTTSSSCEEEEECC---SSCHHHHHHT
T ss_pred EEEEeCCCCccHHH--HHHHHHHHHHhCCCcEEEEECC---CCCChhHHhc
Confidence 34367889999986 5677788889999999988776 3444555553
No 20
>3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A*
Probab=38.30 E-value=19 Score=32.67 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=41.9
Q ss_pred CcceeecCCCCCCC--cccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCC----------CCCHHHHHHH
Q 023655 13 DAVDIVGTGGDGAN--TVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVI----------DLDPEGVRRC 80 (279)
Q Consensus 13 ~~~D~~gtggdG~~--t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~----------~~~~~~~~~~ 80 (279)
.+| .||+++++.+ ..-+.-..+-+....|.||..|-.++-.. .-..++|+..|++. ..+++.+.+.
T Consensus 152 G~i-kig~s~~~~t~~Q~~~f~aq~~~A~e~glPViiH~r~gr~a-~d~l~iL~e~g~~~~~vvi~H~~~~~~~~~a~~~ 229 (363)
T 3ovg_A 152 GII-KAGTGYGAIDRLELKALEVAARTSILTGCPILVHTQLGTMA-LEVAKHLIGFGANPDKIQISHLNKNPDKYYYEKV 229 (363)
T ss_dssp CEE-EEEEEETBEEHHHHHHHHHHHHHHHHHCCCEEEEEETTCSH-HHHHHHHHHHTCCGGGEEEECGGGSCCHHHHHHH
T ss_pred CEE-EEEeCCCCCCHHHHHHHHHHHHHHHHhCCEEEEeCCCCCCH-HHHHHHHHhcCCCCCcEEEEcCCCCCCHHHHHHH
Confidence 456 4677765433 33456667777777899999997653111 12456666656652 1245666666
Q ss_pred HHhcC
Q 023655 81 VDEAG 85 (279)
Q Consensus 81 l~~~g 85 (279)
+++.|
T Consensus 230 l~~~G 234 (363)
T 3ovg_A 230 IKETG 234 (363)
T ss_dssp HHHHC
T ss_pred HHHCC
Confidence 64445
No 21
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=38.25 E-value=67 Score=24.06 Aligned_cols=27 Identities=41% Similarity=0.464 Sum_probs=18.1
Q ss_pred ceeecCCCCCCCcccchHHHHHHHHcCCCcEEe
Q 023655 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAK 47 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~k 47 (279)
|=++|.+|.|+ ||.+-.+ ...|++++.
T Consensus 4 I~l~G~~GsGK-----sT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 4 ILITGMPGSGK-----SEFAKLL-KERGAKVIV 30 (179)
T ss_dssp EEEECCTTSCH-----HHHHHHH-HHTTCEEEE
T ss_pred EEEECCCCCCH-----HHHHHHH-HHCCCcEEE
Confidence 33678778777 5555555 777877664
No 22
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=38.19 E-value=12 Score=32.90 Aligned_cols=34 Identities=32% Similarity=0.450 Sum_probs=26.8
Q ss_pred eecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCC
Q 023655 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRS 52 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~ 52 (279)
+.|.||.|+.| ++...|..+|+.|.+|+.--.+-
T Consensus 19 ~sgKGGvGKTT--vA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 19 IGGKGGVGKTT--ISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp EEESTTSSHHH--HHHHHHHHHHHTTCCEEEEECCS
T ss_pred EeCCCCchHHH--HHHHHHHHHHHCCCcEEEEeCCC
Confidence 56789999986 56677888899999998765543
No 23
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=38.00 E-value=13 Score=35.64 Aligned_cols=37 Identities=27% Similarity=0.346 Sum_probs=28.6
Q ss_pred CcceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCC
Q 023655 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSR 51 (279)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~ 51 (279)
.++=+.|.||.|+.| ++...|..+|+.|.+|+.-..+
T Consensus 9 ~i~~~sgkGGvGKTT--~a~~lA~~lA~~G~rVLlvd~D 45 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTS--ISCATAIRLAEQGKRVLLVSTD 45 (589)
T ss_dssp SEEEEECSTTSSHHH--HHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEeCCCcCHHHH--HHHHHHHHHHHCCCcEEEEECC
Confidence 344468999999986 5777788889999999984433
No 24
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=37.25 E-value=14 Score=33.11 Aligned_cols=33 Identities=30% Similarity=0.428 Sum_probs=26.4
Q ss_pred eecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCC
Q 023655 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSR 51 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~ 51 (279)
+.|-||.|+.| ++...|..+|..|.+|+.--.+
T Consensus 31 ~sgKGGvGKTT--vA~~LA~~lA~~G~rVLlvD~D 63 (349)
T 3ug7_A 31 FGGKGGVGKTT--MSAATGVYLAEKGLKVVIVSTD 63 (349)
T ss_dssp EECSSSTTHHH--HHHHHHHHHHHSSCCEEEEECC
T ss_pred EeCCCCccHHH--HHHHHHHHHHHCCCeEEEEeCC
Confidence 56889999986 5667788889999999876544
No 25
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=37.04 E-value=43 Score=30.69 Aligned_cols=143 Identities=10% Similarity=0.054 Sum_probs=95.5
Q ss_pred eecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCC----CCcC-----------cHHHHHHHcCCCCCCCHHHHHHHH
Q 023655 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSS----SSAC-----------GSADVLEALGVVIDLDPEGVRRCV 81 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~----~~~~-----------Gs~dvLe~LGi~~~~~~~~~~~~l 81 (279)
|...|.+....+..-.-.+-.++.+|..++|.+..-. +..+ ..-|.++.++.+.+ ...+..+.-
T Consensus 32 IAEiG~NH~Gsle~A~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e-~~~~L~~~~ 110 (385)
T 1vli_A 32 IAEAGINHDGKLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAE-WILPLLDYC 110 (385)
T ss_dssp EEEEETTTTTCHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGG-GHHHHHHHH
T ss_pred EEeecCcccccHHHHHHHHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCccHHHHHHhcCCCHH-HHHHHHHHH
Confidence 5655655555777777788888999999999997653 2211 12378888887754 468888889
Q ss_pred HhcCeEEEeCCccChhhhchHHHH---hhhCCCChhHhhhhccCCC---C-CCceEEeeechhhHHHHHHHHHHcCCceE
Q 023655 82 DEAGIGFMMSTKYHPAMKFVRPVR---KKLKVKTVFNILGPMLNPA---C-VPFAVVGVYNENLVLKMANALQRFGLKRA 154 (279)
Q Consensus 82 ~~~g~~fl~~~~~~Pal~~l~~lR---~~lg~Rt~~ntl~pLlNP~---~-~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~ 154 (279)
++.|+-|+..|.=..++..+..+. -++|=|.+-|. |||--+ + |-..=+|....+=...-++.+...|.++.
T Consensus 111 ~~~Gi~~~stpfD~~svd~l~~~~vd~~KIgS~~~~N~--pLL~~va~~gKPViLStGmaTl~Ei~~Ave~i~~~Gn~~i 188 (385)
T 1vli_A 111 REKQVIFLSTVCDEGSADLLQSTSPSAFKIASYEINHL--PLLKYVARLNRPMIFSTAGAEISDVHEAWRTIRAEGNNQI 188 (385)
T ss_dssp HHTTCEEECBCCSHHHHHHHHTTCCSCEEECGGGTTCH--HHHHHHHTTCSCEEEECTTCCHHHHHHHHHHHHTTTCCCE
T ss_pred HHcCCcEEEccCCHHHHHHHHhcCCCEEEECcccccCH--HHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHCCCCcE
Confidence 999999998887766666664441 24455666666 555443 1 22333566655555556666777787778
Q ss_pred EEEec-CCc
Q 023655 155 LVVHS-EGL 162 (279)
Q Consensus 155 lvv~G-eG~ 162 (279)
++.++ .++
T Consensus 189 iLlhc~s~Y 197 (385)
T 1vli_A 189 AIMHCVAKY 197 (385)
T ss_dssp EEEEECSSS
T ss_pred EEEeccCCC
Confidence 88887 664
No 26
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=36.71 E-value=14 Score=29.95 Aligned_cols=29 Identities=28% Similarity=0.259 Sum_probs=22.5
Q ss_pred eecC-CCCCCCcccchHHHHHHHHcCCCcEEe
Q 023655 17 IVGT-GGDGANTVNISTGASILAAACGAKVAK 47 (279)
Q Consensus 17 ~~gt-ggdG~~t~nis~~aA~vlA~~G~~V~k 47 (279)
++++ ||.|+.| ++.-.|..+|+.|.+|+.
T Consensus 6 v~s~kgGvGKTt--~a~nLa~~la~~G~rVll 35 (224)
T 1byi_A 6 VTGTDTEVGKTV--ASCALLQAAKAAGYRTAG 35 (224)
T ss_dssp EEESSTTSCHHH--HHHHHHHHHHHTTCCEEE
T ss_pred EEECCCCCCHHH--HHHHHHHHHHHCCCCEEE
Confidence 5565 7888875 466668888999999986
No 27
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A
Probab=36.66 E-value=18 Score=30.31 Aligned_cols=58 Identities=12% Similarity=0.086 Sum_probs=42.4
Q ss_pred cceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCC
Q 023655 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID 71 (279)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~ 71 (279)
++|+-||=.|+.+.++-+.-+---+.+.|++|+.-.|++--+..+..+.|+.+|+++.
T Consensus 9 ~~DlDGTLl~~~~~i~~~~eal~~l~~~G~~vvl~Tn~~gr~~~~~~~~l~~lg~~~~ 66 (264)
T 3epr_A 9 LIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETP 66 (264)
T ss_dssp EECCBTTTEETTEECHHHHHHHHHHHHHTCCEEEEECCCSSCHHHHHHHHHTTTCCCC
T ss_pred EEeCCCceEeCCEECcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCCCC
Confidence 5788888777777664322233345567999999888876666678899999999764
No 28
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=36.59 E-value=24 Score=29.25 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=41.3
Q ss_pred cceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCC
Q 023655 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID 71 (279)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~ 71 (279)
++|+-||=.|+.+.++-+.-+---+.+.|++|+.--||+.-+..+..+.|+.+|+++.
T Consensus 12 ~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi~v~l~Tgr~~r~~~~~~~~l~~lg~~~~ 69 (268)
T 3qgm_A 12 IIDIDGVIGKSVTPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFGLEVG 69 (268)
T ss_dssp EEECBTTTEETTEECHHHHHHHHHHHHTTCEEEEEECCSSSCHHHHHHHHHHTTCCCC
T ss_pred EEcCcCcEECCCEeCcCHHHHHHHHHHcCCeEEEEeCcCCCCHHHHHHHHHHCCCCCC
Confidence 5788888777766433222233345567999999888876666778899999999753
No 29
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=35.56 E-value=9.2 Score=31.46 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=24.4
Q ss_pred ecCCCCCCCcccchHHHHHHHHcCCCcEEeeCC
Q 023655 18 VGTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (279)
Q Consensus 18 ~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~ 50 (279)
.|-||.|+.| ++...|..+|..|.+|+.-=.
T Consensus 6 s~kGGvGKTt--~a~~LA~~la~~g~~VlliD~ 36 (254)
T 3kjh_A 6 AGKGGVGKTT--VAAGLIKIMASDYDKIYAVDG 36 (254)
T ss_dssp ECSSSHHHHH--HHHHHHHHHTTTCSCEEEEEE
T ss_pred ecCCCCCHHH--HHHHHHHHHHHCCCeEEEEeC
Confidence 5789999986 456668888999999987533
No 30
>1j3m_A The conserved hypothetical protein TT1751; X-RAY crystallography, structural genomics, riken structural genomics/proteomics initiative; 2.00A {Thermus thermophilus} SCOP: d.129.7.1
Probab=35.51 E-value=31 Score=25.98 Aligned_cols=62 Identities=21% Similarity=0.397 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHhcCeEEEeCCccChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHH
Q 023655 69 VIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQR 148 (279)
Q Consensus 69 ~~~~~~~~~~~~l~~~g~~fl~~~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~ 148 (279)
+++...+.+++.|++.||..+..-.+.- .+++++|+. ..++.|+++.+|++...+-+.-..
T Consensus 11 s~~e~~~~l~~al~~~Gf~v~~~id~~~------~l~~k~g~~-------------~~~~~il~~cnP~~a~~~l~~~p~ 71 (129)
T 1j3m_A 11 TLAEARAQVEAALKEEGFGILTEIDVAA------TLKAKLGLE-------------KPPYLILGACNPNLAARALEALPE 71 (129)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEEEEEHHH------HHHHHHCCC-------------CCCEEEEEEECHHHHHHHHHHCGG
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEeCHHH------HHHHhcCCC-------------CCCeEEEEECCHHHHHHHHHhCHH
Confidence 3445567788899999999876533322 345666752 147899999999998766554433
Q ss_pred c
Q 023655 149 F 149 (279)
Q Consensus 149 l 149 (279)
.
T Consensus 72 ~ 72 (129)
T 1j3m_A 72 I 72 (129)
T ss_dssp G
T ss_pred H
Confidence 3
No 31
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=34.70 E-value=29 Score=31.14 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=27.1
Q ss_pred Ccceeec-CCCCCCCcccchHHHHHHHHcCCCcEEeeCCC
Q 023655 13 DAVDIVG-TGGDGANTVNISTGASILAAACGAKVAKQGSR 51 (279)
Q Consensus 13 ~~~D~~g-tggdG~~t~nis~~aA~vlA~~G~~V~kHG~~ 51 (279)
..|=+.+ -||.|+.| ++...|..+|..|.+|+.--.+
T Consensus 144 kvIav~s~KGGvGKTT--~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 144 SVVIFTSPCGGVGTST--VAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp EEEEEECSSTTSSHHH--HHHHHHHHHHHHTCCEEEEECC
T ss_pred eEEEEECCCCCChHHH--HHHHHHHHHHhCCCCEEEEECC
Confidence 3455554 79999886 4556677788889999987665
No 32
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=33.88 E-value=16 Score=32.78 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=27.4
Q ss_pred eecCCCCCCCcccchHHHHHHHH--cCCCcEEeeCCCC
Q 023655 17 IVGTGGDGANTVNISTGASILAA--ACGAKVAKQGSRS 52 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA--~~G~~V~kHG~~~ 52 (279)
+.|-||.|+.| ++...|..+| ..|.+|+.--.+-
T Consensus 23 ~sgKGGvGKTT--vaanLA~~lA~~~~G~rVLLvD~D~ 58 (354)
T 2woj_A 23 VGGKGGVGKTT--SSCSIAIQMALSQPNKQFLLISTDP 58 (354)
T ss_dssp EEESTTSSHHH--HHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred EeCCCCCcHHH--HHHHHHHHHHHhcCCCeEEEEECCC
Confidence 56789999986 6777788899 9999999866553
No 33
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=33.64 E-value=17 Score=30.47 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=24.4
Q ss_pred eecCCCCCCCcccchHHHHHHHHcCCCcEEeeCC
Q 023655 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~ 50 (279)
+.|-||.|+.| ++...|..+|..|.+|+.--.
T Consensus 6 vs~KGGvGKTT--~a~nLA~~la~~G~~VlliD~ 37 (269)
T 1cp2_A 6 IYGKGGIGKST--TTQNLTSGLHAMGKTIMVVGC 37 (269)
T ss_dssp EEECTTSSHHH--HHHHHHHHHHTTTCCEEEEEE
T ss_pred EecCCCCcHHH--HHHHHHHHHHHCCCcEEEEcC
Confidence 35789999986 455667788899999997433
No 34
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=33.13 E-value=62 Score=24.20 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=24.7
Q ss_pred chhhHHHHHHHHHHcCCceEEEEec-CCcc
Q 023655 135 NENLVLKMANALQRFGLKRALVVHS-EGLD 163 (279)
Q Consensus 135 h~~~~~~~a~~~~~lg~~~~lvv~G-eG~d 163 (279)
++++.+.+.+.++..|..-+.|++| +|.-
T Consensus 28 g~pL~~~Iv~~~~~~GiaGaTV~rgi~GfG 57 (114)
T 1o51_A 28 GKPLFEYLVKRAYELGMKGVTVYRGIMGFG 57 (114)
T ss_dssp TEEHHHHHHHHHHHTTCSCCEEEECSCCCC
T ss_pred CeEHHHHHHHHHHHCCCCeEEEEcCcEEEC
Confidence 5678888889999999988999999 8854
No 35
>2l48_A N-acetylmuramoyl-L-alanine amidase; bacillus anthracis gamma- phage endolysin, PLYG, cell WALL B domain, homodimer, ACT-type domain; NMR {Bacillus phage gamma}
Probab=33.10 E-value=87 Score=22.25 Aligned_cols=38 Identities=16% Similarity=0.313 Sum_probs=32.9
Q ss_pred CCceEEeeechhhHHHHHHHHHHcCCceEEEEecCCcc
Q 023655 126 VPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLD 163 (279)
Q Consensus 126 ~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~lvv~GeG~d 163 (279)
-++...|-|.+...+-+..++..+|.+.-++++++|+-
T Consensus 19 ~n~V~TGgfg~~~v~ev~~am~~~g~~gkii~~~dGl~ 56 (85)
T 2l48_A 19 QNIIQSGAFSPYETPDVMGALTSLKMTADFILQSDGLT 56 (85)
T ss_dssp CCCEEECCBCTTTHHHHHHHHHHTTCCEEEEECTTSCE
T ss_pred ceEEEecccCHHHHHHHHHHHHHcCceEEEEECCCceE
Confidence 46788999999999999999999999877887777753
No 36
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=30.97 E-value=31 Score=29.48 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=26.8
Q ss_pred CcceeecC-CCCCCCcccchHHHHHHHHcCCCcEEeeCCC
Q 023655 13 DAVDIVGT-GGDGANTVNISTGASILAAACGAKVAKQGSR 51 (279)
Q Consensus 13 ~~~D~~gt-ggdG~~t~nis~~aA~vlA~~G~~V~kHG~~ 51 (279)
..|=++++ ||.|+.| ++.-.|..+|+.|.+|+.--.+
T Consensus 83 kvI~vts~kgG~GKTt--~a~nLA~~lA~~G~rVLLID~D 120 (271)
T 3bfv_A 83 QSIVITSEAPGAGKST--IAANLAVAYAQAGYKTLIVDGD 120 (271)
T ss_dssp CEEEEECSSTTSSHHH--HHHHHHHHHHHTTCCEEEEECC
T ss_pred eEEEEECCCCCCcHHH--HHHHHHHHHHhCCCeEEEEeCC
Confidence 45556665 8888875 4566688888999999975443
No 37
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=30.51 E-value=31 Score=30.93 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=33.8
Q ss_pred CcceeecCCCCCCCcccchHHHHHHHH--cCCCcEEeeCCCCCCCcCcHHHHHH
Q 023655 13 DAVDIVGTGGDGANTVNISTGASILAA--ACGAKVAKQGSRSSSSACGSADVLE 64 (279)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aA~vlA--~~G~~V~kHG~~~~~~~~Gs~dvLe 64 (279)
.++=+.|-||.|+.| ++...|..+| ..|.+|+.-..+ +..+..+.|.
T Consensus 19 ~i~~~~gkGGvGKTt--~a~~lA~~la~~~~g~~vllid~D---~~~~l~~~~~ 67 (348)
T 3io3_A 19 KWIFVGGKGGVGKTT--TSSSVAVQLALAQPNEQFLLISTD---PAHNLSDAFC 67 (348)
T ss_dssp SEEEEECSTTSSHHH--HHHHHHHHHHHHCTTSCEEEEECC---SSCHHHHHHT
T ss_pred EEEEEeCCCCCcHHH--HHHHHHHHHHHhcCCCeEEEEECC---CCCChHHHhc
Confidence 344467889999986 5666778888 899999998876 3344555543
No 38
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=30.18 E-value=20 Score=30.55 Aligned_cols=30 Identities=33% Similarity=0.385 Sum_probs=23.5
Q ss_pred eecCCCCCCCcccchHHHHHHHHcCCCcEEee
Q 023655 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~kH 48 (279)
+.|-||.|+.| ++...|..+|..|.+|+.-
T Consensus 7 vs~KGGvGKTT--~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 7 IYGKGGIGKST--TTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EEECTTSSHHH--HHHHHHHHHHHTTCCEEEE
T ss_pred EeCCCcCcHHH--HHHHHHHHHHHCCCeEEEE
Confidence 35789999986 4555677888899999964
No 39
>3tc3_A UV damage endonuclease; TIM-barrel, hydrolase; 1.50A {Sulfolobus acidocaldarius}
Probab=28.82 E-value=20 Score=31.95 Aligned_cols=102 Identities=12% Similarity=0.092 Sum_probs=61.5
Q ss_pred CCCCCCCcCcHHHHHHHcCCCCCCCHHHHHHHHHhcCeEEEeC-CccCh-----------------hhhchHHHHhhhCC
Q 023655 49 GSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMS-TKYHP-----------------AMKFVRPVRKKLKV 110 (279)
Q Consensus 49 G~~~~~~~~Gs~dvLe~LGi~~~~~~~~~~~~l~~~g~~fl~~-~~~~P-----------------al~~l~~lR~~lg~ 110 (279)
.+|.++-+.-+.+.|+.++..=..+..++.+.-+++||-|+=. +.+.| .++.+..+=++.|+
T Consensus 37 ~~rt~~~~~~~~~~l~~l~~~Nl~~l~~il~~n~~~~I~~yRiSS~l~P~~thp~~~~~~~~~~~~~l~~iG~~a~~~~i 116 (310)
T 3tc3_A 37 ADKTIKLSSLSEERVLKVSSSNLLCLKNILEWNLKHEILFFRISSNTIPLASHPKFHVNWKDKLSHILGDIGDFIKENSI 116 (310)
T ss_dssp SCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECCTTSSTTTTSTTCCCCHHHHTHHHHHHHHHHHHHTTC
T ss_pred CCccEEHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEEeCcccCCCccccccccchHHHHHHHHHHHHHHHHHcCc
Confidence 3555555555678888875421233445555566999998854 22222 23334444456677
Q ss_pred CChhHhhhhccCCCCCCceEEeeech-------hhHHHHHHHHHHcCCceEEEEec
Q 023655 111 KTVFNILGPMLNPACVPFAVVGVYNE-------NLVLKMANALQRFGLKRALVVHS 159 (279)
Q Consensus 111 Rt~~ntl~pLlNP~~~~~~v~Gv~h~-------~~~~~~a~~~~~lg~~~~lvv~G 159 (279)
|-.|+- ..+.+++--+| ..++.+++++..+|.+..++||.
T Consensus 117 RLS~HP---------gqF~vL~S~~~~Vv~~SI~dL~yHa~~ld~mG~~~~i~IH~ 163 (310)
T 3tc3_A 117 RISMHP---------GQYVVLNSVREEVVRSSIMELKYHADLLDSMGIEGKIQIHV 163 (310)
T ss_dssp EEEECC---------CTTCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEC
T ss_pred EEEecC---------CCCccCCCCCHHHHHHHHHHHHHHHHHHHhcCCCcCceeec
Confidence 655443 23444444444 34567899999999988899994
No 40
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=28.24 E-value=2.1e+02 Score=24.51 Aligned_cols=82 Identities=13% Similarity=0.129 Sum_probs=49.9
Q ss_pred CcceeecCCCCCCCcccchHHHHHHHH-cCCCcEEeeCCCCCCCcCcHHHHHHH----cCCCC--CCCHHHHHHH---HH
Q 023655 13 DAVDIVGTGGDGANTVNISTGASILAA-ACGAKVAKQGSRSSSSACGSADVLEA----LGVVI--DLDPEGVRRC---VD 82 (279)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aA~vlA-~~G~~V~kHG~~~~~~~~Gs~dvLe~----LGi~~--~~~~~~~~~~---l~ 82 (279)
..+=++|.+|.|+.|+ .-..|..++ ..|.+|..-+.+. .+.+..+-|+. +|+++ ..++.++... ++
T Consensus 106 ~vi~lvG~~GsGKTTl--~~~LA~~l~~~~G~~V~lv~~D~--~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~ 181 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTT--LAKLAAISMLEKHKKIAFITTDT--YRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFS 181 (296)
T ss_dssp SEEEEEESTTSSHHHH--HHHHHHHHHHTTCCCEEEEECCC--SSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGG
T ss_pred cEEEEECCCCCCHHHH--HHHHHHHHHHhcCCEEEEEecCc--ccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhc
Confidence 4677899999999641 222333445 4799998877654 34455444443 56665 2344444443 35
Q ss_pred hcCeEEEeCCccChhh
Q 023655 83 EAGIGFMMSTKYHPAM 98 (279)
Q Consensus 83 ~~g~~fl~~~~~~Pal 98 (279)
+..+.++..+-..|..
T Consensus 182 ~~dlvIiDT~G~~~~~ 197 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKD 197 (296)
T ss_dssp GSSEEEEECCCCCTTS
T ss_pred CCCEEEEeCCCCChhh
Confidence 6678888876666553
No 41
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*
Probab=27.79 E-value=46 Score=29.83 Aligned_cols=58 Identities=17% Similarity=0.086 Sum_probs=41.6
Q ss_pred cceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHH-HcCCCCC
Q 023655 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLE-ALGVVID 71 (279)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe-~LGi~~~ 71 (279)
++|+-||=++|...++=..-+--.|.+.|++++.--|.+-.+....++.|. .||+++.
T Consensus 17 l~D~DGvl~~g~~~~p~a~~~l~~l~~~g~~~~~vTNn~~~~~~~~~~~l~~~lgi~~~ 75 (352)
T 3kc2_A 17 AFDIDGVLFRGKKPIAGASDALKLLNRNKIPYILLTNGGGFSERARTEFISSKLDVDVS 75 (352)
T ss_dssp EECCBTTTEETTEECTTHHHHHHHHHHTTCCEEEECSCCSSCHHHHHHHHHHHHTSCCC
T ss_pred EEECCCeeEcCCeeCcCHHHHHHHHHHCCCEEEEEeCCCCCCchHHHHHHHHhcCCCCC
Confidence 689999999988755543334445678899999988876444445566776 7999764
No 42
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=26.73 E-value=25 Score=27.86 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=23.5
Q ss_pred cCCCCCCCcccchHHHHHHHHcCCCcEEeeCCC
Q 023655 19 GTGGDGANTVNISTGASILAAACGAKVAKQGSR 51 (279)
Q Consensus 19 gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~ 51 (279)
+.||.|+.| ++...|..+|..|.+|+.--.+
T Consensus 9 ~kgG~GKTt--~a~~la~~la~~g~~vlliD~D 39 (206)
T 4dzz_A 9 PKGGSGKTT--AVINIATALSRSGYNIAVVDTD 39 (206)
T ss_dssp SSTTSSHHH--HHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCccHHH--HHHHHHHHHHHCCCeEEEEECC
Confidence 458889886 4566678888999999976544
No 43
>2gdt_A Leader protein; P65 homolog; NSP1 (EC 3.4.22.-); beta-barrel, alpha-beta, replicase, structural genomics, PSI-2, protein structure initiative; NMR {Sars coronavirus} SCOP: d.346.1.1 PDB: 2hsx_A
Probab=26.20 E-value=31 Score=25.65 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=18.8
Q ss_pred cCcCCCHHHHHHHHHHHHHccH
Q 023655 239 SCKVNTLAEGVALAREIQLSGK 260 (279)
Q Consensus 239 ~g~~~~~~eg~~~a~~~l~sG~ 260 (279)
.|...+++||++.|++.|..|+
T Consensus 18 ~gw~~~~EeALe~ar~~L~~g~ 39 (116)
T 2gdt_A 18 RGFGDSVEEALSEAREHLKNGT 39 (116)
T ss_dssp CCSCSSHHHHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHhhcCC
Confidence 4667789999999999998885
No 44
>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}
Probab=26.05 E-value=40 Score=28.00 Aligned_cols=57 Identities=14% Similarity=0.066 Sum_probs=37.7
Q ss_pred cceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCC
Q 023655 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVI 70 (279)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~ 70 (279)
++|+-||=.++...++-+.-+---+.+.|++|+.-.||+..+.....+.|+.+|++.
T Consensus 5 ~~D~DGtL~~~~~~~~~~~~~l~~l~~~g~~~~~~T~r~~~~~~~~~~~l~~lg~~~ 61 (263)
T 1zjj_A 5 IFDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGIDV 61 (263)
T ss_dssp EEECBTTTEETTEECTTHHHHHHHHHHHTCCEEEEESCCSSCHHHHHHHHHTTTCCC
T ss_pred EEeCcCceEeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCCC
Confidence 467778877776644332222334556799999888887655555667777789874
No 45
>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A
Probab=25.53 E-value=84 Score=25.36 Aligned_cols=58 Identities=19% Similarity=0.035 Sum_probs=37.4
Q ss_pred cceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCC
Q 023655 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID 71 (279)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~ 71 (279)
++|+-||=.|+...++-..-+--.+.+.|+++....++...+.....+.|+.+|++..
T Consensus 11 ~fDlDGTLld~~~~~~~~~~ai~~l~~~G~~~~~~t~~~~~~~~~~~~~l~~~g~~~~ 68 (259)
T 2ho4_A 11 LVDLNGTLHIEDAAVPGAQEALKRLRATSVMVRFVTNTTKETKKDLLERLKKLEFEIS 68 (259)
T ss_dssp EEESSSSSCC---CCTTHHHHHHHHHTSSCEEEEEECCSSCCHHHHHHHHHHTTCCCC
T ss_pred EEeCcCcEEeCCEeCcCHHHHHHHHHHCCCeEEEEeCCCCcCHHHHHHHHHHcCCCcc
Confidence 5777788777766544333333456788999987776654444557788888898754
No 46
>2dcl_A Hypothetical UPF0166 protein PH1503; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; HET: AMP; 2.28A {Pyrococcus horikoshii}
Probab=25.52 E-value=75 Score=24.23 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=24.8
Q ss_pred chhhHHHHHHHHHHcCCceEEEEec-CCcc
Q 023655 135 NENLVLKMANALQRFGLKRALVVHS-EGLD 163 (279)
Q Consensus 135 h~~~~~~~a~~~~~lg~~~~lvv~G-eG~d 163 (279)
++++.+.+.+.++..|..-+.|++| .|.-
T Consensus 24 g~pL~~~Iv~~a~~~GiaGaTV~rgi~GfG 53 (127)
T 2dcl_A 24 GRPLYKVIVEKLREMGIAGATVYRGIYGFG 53 (127)
T ss_dssp TEEHHHHHHHHHHHTTCSCEEEEECSEEEC
T ss_pred CcCHHHHHHHHHHHCCCCeEEEEcCcEEEC
Confidence 5678888899999999989999998 7744
No 47
>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14
Probab=24.86 E-value=69 Score=26.27 Aligned_cols=57 Identities=12% Similarity=0.021 Sum_probs=35.6
Q ss_pred cceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHH-cCCCC
Q 023655 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEA-LGVVI 70 (279)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~-LGi~~ 70 (279)
++|+-||=.|+...++-..-+--.+...|+++....|+...+.....+.|.. +|++.
T Consensus 9 ~fDlDGTL~~~~~~~~~~~~~l~~l~~~g~~~~~~t~~~~~~~~~~~~~l~~~~g~~~ 66 (264)
T 1yv9_A 9 LIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDIHV 66 (264)
T ss_dssp EECCBTTTEETTEECHHHHHHHHHHHHTTCCEEEEECCCSSCHHHHHHHHHHHSCCCC
T ss_pred EEeCCCeEEeCCEECcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHhcCCCC
Confidence 5788888777666543111122346688999988777765544444444555 89875
No 48
>1q9u_A Uncharacterized protein APC35924; structural genomics, Zn-binding proteins, PSI, protein structure initiative; HET: CSW CME; 1.80A {Geobacillus stearothermophilus} SCOP: d.129.7.1
Probab=24.21 E-value=85 Score=23.39 Aligned_cols=61 Identities=13% Similarity=0.241 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHHhcCeEEEeCCccChhhhchHHHHhhhCCCChhHhhhhccCCCCCCceEEeeechhhHHHHHHHHHHc
Q 023655 70 IDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRF 149 (279)
Q Consensus 70 ~~~~~~~~~~~l~~~g~~fl~~~~~~Pal~~l~~lR~~lg~Rt~~ntl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~~~~l 149 (279)
++...+.+++.|++.||..+..-.+.-. +++. |+. ...++.++++.+|++...+.+.-...
T Consensus 15 ~~e~~~~l~~al~~~Gf~v~~~~d~~~~------~~~~-G~~------------~~~~~~il~~cnp~~a~~~l~~~p~~ 75 (130)
T 1q9u_A 15 MNETIERLEESLKQEGFGVLWQFSVTEK------LQEK-GLD------------FSTPMVILEVCNPQEAARVLNENLLV 75 (130)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEHHHH------HHHT-TCC------------CCSCEEEEEEECHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECHHHH------HHhc-CCC------------CCCCCEEEEEeCHHHHHHHHHhCHHH
Confidence 3444667788899999998765433322 3333 641 12468999999999987766544333
No 49
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=24.13 E-value=31 Score=28.95 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=24.3
Q ss_pred cceee-cCCCCCCCcccchHHHHHHHHcCCCcEEeeCC
Q 023655 14 AVDIV-GTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (279)
Q Consensus 14 ~~D~~-gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~ 50 (279)
.|=++ +-||.|+.| ++...|..+|..|.+|+.--.
T Consensus 20 vI~v~s~kGGvGKTT--~a~nLA~~la~~G~~VlliD~ 55 (262)
T 2ph1_A 20 RIAVMSGKGGVGKST--VTALLAVHYARQGKKVGILDA 55 (262)
T ss_dssp EEEEECSSSCTTHHH--HHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEcCCCCCCHHH--HHHHHHHHHHHCCCeEEEEeC
Confidence 34343 458888876 455667888889999997433
No 50
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=23.18 E-value=33 Score=28.28 Aligned_cols=30 Identities=30% Similarity=0.273 Sum_probs=22.2
Q ss_pred cCCCCCCCcccchHHHHHHHHcCCCcEEeeCC
Q 023655 19 GTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (279)
Q Consensus 19 gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~ 50 (279)
+.||.|+.| ++...|..+|..|.+|+.--.
T Consensus 10 ~kgGvGKTt--~a~~LA~~la~~g~~VlliD~ 39 (260)
T 3q9l_A 10 GKGGVGKTT--SSAAIATGLAQKGKKTVVIDF 39 (260)
T ss_dssp SSTTSSHHH--HHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCCcHHH--HHHHHHHHHHhCCCcEEEEEC
Confidence 448888876 455667788899999997433
No 51
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=23.18 E-value=37 Score=28.09 Aligned_cols=58 Identities=17% Similarity=0.117 Sum_probs=39.2
Q ss_pred cceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCCC
Q 023655 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID 71 (279)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~ 71 (279)
++|+-||=.++.+.++-+.-+---+.+.|++|+.--||+.-+..+..+.|+.+|+++.
T Consensus 10 ~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi~v~laTgrs~r~~~~~~~~l~~lg~~~~ 67 (266)
T 3pdw_A 10 LIDLDGTMYNGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFDIPAT 67 (266)
T ss_dssp EEECSSSTTCHHHHHHHHHHHHHHHHHTTCCEEEEESCCSSCHHHHHHHHHHTTCCCC
T ss_pred EEeCcCceEeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCC
Confidence 5788888666543322222223345567999999888776666678899999998754
No 52
>3n2l_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, infectious diseases; 2.10A {Vibrio cholerae}
Probab=22.65 E-value=77 Score=26.88 Aligned_cols=71 Identities=14% Similarity=0.162 Sum_probs=48.1
Q ss_pred HHHHHHHcCCCcEEeeC---CCCCCC---cCcHHHHHHHcCCCCC--CCHHHHHHHHHhcCeEEEeCCccChhhhchHHH
Q 023655 33 GASILAAACGAKVAKQG---SRSSSS---ACGSADVLEALGVVID--LDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPV 104 (279)
Q Consensus 33 ~aA~vlA~~G~~V~kHG---~~~~~~---~~Gs~dvLe~LGi~~~--~~~~~~~~~l~~~g~~fl~~~~~~Pal~~l~~l 104 (279)
.++-++-++|..|+.-. .|.-.. ..+..++++..|+|+. .+.+++.+.+.+.|. +...+..+...
T Consensus 160 ~a~~~l~~~Ga~vv~v~vlvdr~egG~~~l~a~~~~~~~~Gv~v~SL~~~~~l~~~~~~~~~-------~~~~~~~~~~~ 232 (238)
T 3n2l_A 160 ESMELIQANKADLAGVLVAIDRQEKGKGELSAIQEVERDFGCAVISIVSLTDLITYLEQQGN-------NTEHLEAVKAY 232 (238)
T ss_dssp HHHHHHHHTTCEEEEEEEEEECCCBCSSSSBHHHHHHHHHCCEEEEEEEHHHHHHHHHSSCC-------HHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEEEEEEEcccCccchhhHHHHHHHHcCCCEEEEEEHHHHHHHHHHcCC-------cHHHHHHHHHH
Confidence 35566777888776422 233222 2345666699999976 688899998888773 22457788889
Q ss_pred HhhhCC
Q 023655 105 RKKLKV 110 (279)
Q Consensus 105 R~~lg~ 110 (279)
|++.|+
T Consensus 233 r~~yg~ 238 (238)
T 3n2l_A 233 RAQYGI 238 (238)
T ss_dssp HHHHBC
T ss_pred HHHhCc
Confidence 998874
No 53
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.13 E-value=59 Score=22.16 Aligned_cols=36 Identities=25% Similarity=0.462 Sum_probs=28.5
Q ss_pred cCcHHHHHHHcCCCCCCCHHHHHHHHHhcCeEEEeCCccChh
Q 023655 56 ACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPA 97 (279)
Q Consensus 56 ~~Gs~dvLe~LGi~~~~~~~~~~~~l~~~g~~fl~~~~~~Pa 97 (279)
..+..|.++-||++...+.+++.+...+. +..|||-
T Consensus 5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l------~~~~HPD 40 (82)
T 2ej7_A 5 SSGMVDYYEVLDVPRQASSEAIKKAYRKL------ALKWHPD 40 (82)
T ss_dssp CSSSCCHHHHTTCCTTCCHHHHHHHHHHH------HTTSCTT
T ss_pred CCCCcCHHHHcCCCCCCCHHHHHHHHHHH------HHHHCcC
Confidence 34567899999999999999999988875 3455664
No 54
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=21.88 E-value=40 Score=29.16 Aligned_cols=37 Identities=8% Similarity=0.150 Sum_probs=26.8
Q ss_pred Ccceeec-CCCCCCCcccchHHHHHHHHcCCCcEEeeCCC
Q 023655 13 DAVDIVG-TGGDGANTVNISTGASILAAACGAKVAKQGSR 51 (279)
Q Consensus 13 ~~~D~~g-tggdG~~t~nis~~aA~vlA~~G~~V~kHG~~ 51 (279)
.+|=+++ .||.|+.| ++...|..+|+.|.+|+.--.+
T Consensus 93 kvI~vts~kgG~GKTt--va~nLA~~lA~~G~rVLLID~D 130 (286)
T 3la6_A 93 NVLMMTGVSPSIGMTF--VCANLAAVISQTNKRVLLIDCD 130 (286)
T ss_dssp CEEEEEESSSSSSHHH--HHHHHHHHHHTTTCCEEEEECC
T ss_pred eEEEEECCCCCCcHHH--HHHHHHHHHHhCCCCEEEEecc
Confidence 3454555 47888876 5666788899999999986554
No 55
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=21.88 E-value=37 Score=27.59 Aligned_cols=30 Identities=30% Similarity=0.494 Sum_probs=22.1
Q ss_pred cCCCCCCCcccchHHHHHHHHcCCCcEEeeCC
Q 023655 19 GTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (279)
Q Consensus 19 gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~ 50 (279)
+-||.|+.| ++...|..+|+.|.+|+.--.
T Consensus 10 ~kgGvGKTt--~a~~LA~~la~~g~~VlliD~ 39 (237)
T 1g3q_A 10 GKGGTGKTT--VTANLSVALGDRGRKVLAVDG 39 (237)
T ss_dssp SSTTSSHHH--HHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCCCHHH--HHHHHHHHHHhcCCeEEEEeC
Confidence 347888876 456667788889999987543
No 56
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=21.54 E-value=41 Score=27.89 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=22.4
Q ss_pred ecCCCCCCCcccchHHHHHHHHcCCCcEEeeC
Q 023655 18 VGTGGDGANTVNISTGASILAAACGAKVAKQG 49 (279)
Q Consensus 18 ~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG 49 (279)
.+-||.|+.| ++...|..+|..|.+|+.--
T Consensus 9 s~kgGvGKTt--~a~~LA~~la~~g~~VlliD 38 (263)
T 1hyq_A 9 SGKGGTGKTT--ITANLGVALAQLGHDVTIVD 38 (263)
T ss_dssp ESSSCSCHHH--HHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCCHHH--HHHHHHHHHHhCCCcEEEEE
Confidence 3568888876 45566777888999998753
No 57
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=21.45 E-value=18 Score=32.87 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=26.1
Q ss_pred eecCCCCCCCcccchHHHHHHHHcCCCcEEeeCC
Q 023655 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~ 50 (279)
+.|.||.|+.| ++...|..+|..|.+|+.-..
T Consensus 7 ~~gkGG~GKTt--~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 7 FLGKSGVARTK--IAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp EECSBHHHHHH--HHHHHHHHHHHTTCCEEEEEC
T ss_pred EeCCCCCcHHH--HHHHHHHHHHHCCCCeEEEeC
Confidence 56889999986 567778888999999987655
No 58
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=21.38 E-value=38 Score=27.63 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=23.3
Q ss_pred cCCCCCCCcccchHHHHHHHHcC-CCcEEeeCCC
Q 023655 19 GTGGDGANTVNISTGASILAAAC-GAKVAKQGSR 51 (279)
Q Consensus 19 gtggdG~~t~nis~~aA~vlA~~-G~~V~kHG~~ 51 (279)
+-||.|+.| ++...|..+|.. |.+|+.--.+
T Consensus 12 ~kGGvGKTt--~a~~LA~~la~~~g~~VlliD~D 43 (245)
T 3ea0_A 12 AKGGDGGSC--IAANFAFALSQEPDIHVLAVDIS 43 (245)
T ss_dssp SSTTSSHHH--HHHHHHHHHTTSTTCCEEEEECC
T ss_pred CCCCcchHH--HHHHHHHHHHhCcCCCEEEEECC
Confidence 458899886 466677888998 9999975443
No 59
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=21.15 E-value=70 Score=28.81 Aligned_cols=142 Identities=15% Similarity=0.169 Sum_probs=92.2
Q ss_pred eecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCC----CCcC----------cHHHHHHHcCCCCCCCHHHHHHHHH
Q 023655 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSS----SSAC----------GSADVLEALGVVIDLDPEGVRRCVD 82 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~----~~~~----------Gs~dvLe~LGi~~~~~~~~~~~~l~ 82 (279)
|.+.|.+....+....-.+-.++.+|..++|.+.... +..+ ..-|.++.+|.+.+ ...+..+.-+
T Consensus 23 IAe~g~NH~gs~e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e-~~~~L~~~~~ 101 (349)
T 2wqp_A 23 ICEIGINHEGSLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEE-DEIKLKEYVE 101 (349)
T ss_dssp EEEEETTTTTCHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHH-HHHHHHHHHH
T ss_pred EEecCCcccCCHHHHHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhCCCHH-HHHHHHHHHH
Confidence 5665554555667777788888999999999995432 1111 12388999987654 3567777888
Q ss_pred hcCeEEEeCCccChhhhchHHHH---hhhCCCChhHhhhhccCCC---C-CCceEEeeechhhHHHHHHHHHHcCCceEE
Q 023655 83 EAGIGFMMSTKYHPAMKFVRPVR---KKLKVKTVFNILGPMLNPA---C-VPFAVVGVYNENLVLKMANALQRFGLKRAL 155 (279)
Q Consensus 83 ~~g~~fl~~~~~~Pal~~l~~lR---~~lg~Rt~~ntl~pLlNP~---~-~~~~v~Gv~h~~~~~~~a~~~~~lg~~~~l 155 (279)
+.|+.|+..|.=..++..+..+- -++|=|.+-|. |||--+ + |-..=+|....+=...-++.+...|. +.+
T Consensus 102 ~~Gi~~~st~~d~~svd~l~~~~v~~~KI~S~~~~n~--~LL~~va~~gkPviLstGmat~~Ei~~Ave~i~~~G~-~ii 178 (349)
T 2wqp_A 102 SKGMIFISTLFSRAAALRLQRMDIPAYKIGSGECNNY--PLIKLVASFGKPIILSTGMNSIESIKKSVEIIREAGV-PYA 178 (349)
T ss_dssp HTTCEEEEEECSHHHHHHHHHHTCSCEEECGGGTTCH--HHHHHHHTTCSCEEEECTTCCHHHHHHHHHHHHHHTC-CEE
T ss_pred HhCCeEEEeeCCHHHHHHHHhcCCCEEEECcccccCH--HHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHcCC-CEE
Confidence 99999998877767776665541 24455666666 555443 1 22333466555555555666666776 677
Q ss_pred EEec-CCc
Q 023655 156 VVHS-EGL 162 (279)
Q Consensus 156 vv~G-eG~ 162 (279)
+.|+ .++
T Consensus 179 Llhc~s~Y 186 (349)
T 2wqp_A 179 LLHCTNIY 186 (349)
T ss_dssp EEECCCCS
T ss_pred EEeccCCC
Confidence 7787 664
No 60
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=21.01 E-value=66 Score=26.44 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=30.0
Q ss_pred CCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCC
Q 023655 23 DGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVI 70 (279)
Q Consensus 23 dG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~ 70 (279)
-|+.| .....|+-++..|.+|..----.-....|-.++++.|++.+
T Consensus 39 kGKTT--aA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~ 84 (196)
T 1g5t_A 39 KGKTT--AAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEF 84 (196)
T ss_dssp SCHHH--HHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEE
T ss_pred CCHHH--HHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEE
Confidence 45544 45556777778899999763322124568889999997443
No 61
>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*
Probab=20.56 E-value=80 Score=25.94 Aligned_cols=57 Identities=18% Similarity=-0.012 Sum_probs=38.2
Q ss_pred cceeecCCCCCCCcccchHHHHHHHHcCCCcEEeeCCCCCCCcCcHHHHHHHcCCCC
Q 023655 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVI 70 (279)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~ 70 (279)
++|+-||=.|+.+..+-+.-+.--+.+.|++++.-.|++--+.....+.++.+|++.
T Consensus 21 ~~DlDGTLl~~~~~~~~~~~~l~~l~~~G~~~~~aTn~~gr~~~~~~~~~~~lg~~~ 77 (271)
T 1vjr_A 21 ILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNMGVDV 77 (271)
T ss_dssp EECCBTTTEETTEECTTHHHHHHHHHHTTCEEEEEESCTTSCHHHHHHHHHHTTCCC
T ss_pred EEcCcCcEEeCCEECcCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHcCCCC
Confidence 588888877764422222122223678899999888776444556788899999875
Done!