BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023657
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 144 bits (364), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/242 (37%), Positives = 120/242 (49%), Gaps = 27/242 (11%)
Query: 36 HILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGV---KPTPKGLLLGVPVKTH 92
H L D ++ VN+ W+A N F N + K L G P P ++
Sbjct: 8 HPLSDELVNYVNKR-NTTWQAGHN--FYNVDMSYLKRLCGTFLGGPKPPQRVM------F 58
Query: 93 DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN 152
+ LKLP SFDAR WPQC TI I DQG CGSCWAFGAVEA+SDR CIH ++S+ V+
Sbjct: 59 TEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVS 118
Query: 153 XXXXXX--XXXXXXXXXXXYPISAWRYFVHHGVVTE-------ECDPYF-----DSTGCS 198
YP AW ++ G+V+ C PY S
Sbjct: 119 AEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGS 178
Query: 199 HPGCEPAYPTPKCVRKCVKK-NQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFT 257
P C TPKC + C + ++ KHY ++Y +++ +DIMAEIYKNGPVE +F+
Sbjct: 179 RPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFS 238
Query: 258 VY 259
VY
Sbjct: 239 VY 240
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 97/179 (54%), Gaps = 15/179 (8%)
Query: 96 LKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXX 155
LKLP SFDAR WPQC TI I DQG CGSCWAFGAVEA+SDR CIH ++S+ V+
Sbjct: 1 LKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAED 60
Query: 156 XXX--XXXXXXXXXXXYPISAWRYFVHHGVVTE-------ECDPYF-----DSTGCSHPG 201
YP AW ++ G+V+ C PY S P
Sbjct: 61 LLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPP 120
Query: 202 CEPAYPTPKCVRKCVKK-NQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVY 259
C TPKC + C + ++ KHY ++Y +++ +DIMAEIYKNGPVE +F+VY
Sbjct: 121 CTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY 179
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 134 bits (338), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 89/242 (36%), Positives = 121/242 (50%), Gaps = 27/242 (11%)
Query: 36 HILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLG-VKPTPKGLLLGVPVKTH-D 93
H L D +I +N+ W+A RN F N + K L G V PK +P +
Sbjct: 7 HPLSDDMINYINKQNTT-WQAGRN--FYNVDISYLKKLCGTVLGGPK-----LPERVGFS 58
Query: 94 KSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSV 151
+ + LP+SFDAR W C TI++I DQG CGS WAFGAVEA+SDR CIH +N+ +S
Sbjct: 59 EDINLPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSA 118
Query: 152 NXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTE-------ECDPYFDSTGCSH----- 199
YP AW ++ G+V+ C PY C H
Sbjct: 119 EDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPP-CEHHVNGA 177
Query: 200 -PGCEPAYPTPKCVRKC-VKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFT 257
P C TPKC + C + ++ KHY ++Y ++ ++IMAEIYKNGPVE +FT
Sbjct: 178 RPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFT 237
Query: 258 VY 259
V+
Sbjct: 238 VF 239
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/178 (42%), Positives = 96/178 (53%), Gaps = 15/178 (8%)
Query: 97 KLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXX 156
KLP SFDAR WPQC TI I DQG CGSCWAFGAVEA+SDR CIH ++S+ V+
Sbjct: 1 KLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDL 60
Query: 157 XX--XXXXXXXXXXXYPISAWRYFVHHGVVTE-------ECDPYF-----DSTGCSHPGC 202
YP AW ++ G+V+ C PY S P C
Sbjct: 61 LTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 120
Query: 203 EPAYPTPKCVRKCVKK-NQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVY 259
TPKC + C + ++ KHY ++Y +++ +DIMAEIYKNGPVE +F+VY
Sbjct: 121 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY 178
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 98/181 (54%), Gaps = 15/181 (8%)
Query: 94 KSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNX 153
+ LKLP SFDAR WPQC TI I DQG CGS WAFGAVEA+SDR CIH ++S+ V+
Sbjct: 3 EDLKLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSA 62
Query: 154 XXXXX--XXXXXXXXXXXYPISAWRYFVHHGVVTE-------ECDPYFDSTGCSH----- 199
YP AW ++ G+V+ C PY +H
Sbjct: 63 EDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGAR 122
Query: 200 PGCEPAYPTPKCVRKCVKK-NQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTV 258
P C TPKC + C + ++ KHY ++Y +++ +DIMAEIYKNGPVE +F+V
Sbjct: 123 PPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV 182
Query: 259 Y 259
Y
Sbjct: 183 Y 183
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 95/177 (53%), Gaps = 15/177 (8%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXXX 157
LP SFDAR WPQC TI I DQG CGSCWAFGAVEA+SDR CIH ++S+ V+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 158 X--XXXXXXXXXXXYPISAWRYFVHHGVVTE-------ECDPYF-----DSTGCSHPGCE 203
YP AW ++ G+V+ C PY S P C
Sbjct: 61 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 204 PAYPTPKCVRKCVKK-NQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVY 259
TPKC + C + ++ KHY ++Y +++ +DIMAEIYKNGPVE +F+VY
Sbjct: 121 GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY 177
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 127 bits (320), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 97/182 (53%), Gaps = 17/182 (9%)
Query: 94 KSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSV 151
+ + LP+SFDAR W C TI++I DQG CGSCWAFGAVEA+SDR CIH +N+ +S
Sbjct: 3 EDINLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSA 62
Query: 152 NXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTE-------ECDPYFDSTGCSH----- 199
YP AW ++ G+V+ C PY C H
Sbjct: 63 EDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPP-CEHHVNGA 121
Query: 200 -PGCEPAYPTPKCVRKC-VKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFT 257
P C TPKC + C + ++ KHY ++Y ++ ++IMAEIYKNGPVE +FT
Sbjct: 122 RPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFT 181
Query: 258 VY 259
V+
Sbjct: 182 VF 183
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 127 bits (318), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 94/177 (53%), Gaps = 15/177 (8%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNXXX 155
LP+SFDAR WP C TI I DQG CGSCWAFGAVEA+SDR CIH +N+ +S
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 156 XXXXXXXXXXXXXXYPISAWRYFVHHGVVTE-------ECDPYF-----DSTGCSHPGCE 203
+P AW ++ G+V+ C PY S P C
Sbjct: 61 TCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 204 PAYPTPKCVRKCVKK-NQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVY 259
TPKC + C + ++ KH+ S+Y + ++ ++IMAEIYKNGPVE +F+VY
Sbjct: 121 GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVY 177
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 95/178 (53%), Gaps = 17/178 (9%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNXXX 155
LP+SFDAR W C TI++I DQG CGSCWAFGAVEA+SDR CIH +N+ +S
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 156 XXXXXXXXXXXXXXYPISAWRYFVHHGVVTE-------ECDPYFDSTGCSH------PGC 202
YP AW ++ G+V+ C PY C H P C
Sbjct: 61 TCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPP-CEHHVNGARPPC 119
Query: 203 EPAYPTPKCVRKC-VKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVY 259
TPKC + C + ++ KHY ++Y ++ ++IMAEIYKNGPVE +FTV+
Sbjct: 120 TGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVF 177
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 93/177 (52%), Gaps = 15/177 (8%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNXXX 155
LP+SFDAR WP C TI I DQG CGSCWAFGAVEA+SDR CIH +N+ +S
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 156 XXXXXXXXXXXXXXYPISAWRYFVHHGVVTE-------ECDPYF-----DSTGCSHPGCE 203
P AW ++ G+V+ C PY S P C
Sbjct: 61 TCCGGECGDGCNGGEPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 204 PAYPTPKCVRKCVKK-NQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVY 259
TPKC + C + ++ KH+ S+Y + ++ ++IMAEIYKNGPVE +F+VY
Sbjct: 121 GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVY 177
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 95/189 (50%), Gaps = 33/189 (17%)
Query: 96 LKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLS-VN 152
+++P SFD+R WP+C +I+ I DQ CGSCWAFGAVEA+SDR CI G N+ LS V+
Sbjct: 1 VEIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVD 60
Query: 153 XXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEP-------- 204
P AW Y+V G+VT S+ +H GCEP
Sbjct: 61 LLSCCESCGLGCEGGILGP--AWDYWVKEGIVT-------GSSKENHAGCEPYPFPKCEH 111
Query: 205 ------------AYPTPKCVRKCVKKNQL-WRNSKHYSISAYRINSDPEDIMAEIYKNGP 251
Y TP+C + C KK + + KH S+Y + +D + I EI K GP
Sbjct: 112 HTKGKYPPCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGP 171
Query: 252 VEVSFTVYE 260
VE FTVYE
Sbjct: 172 VEAGFTVYE 180
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 102/237 (43%), Gaps = 13/237 (5%)
Query: 34 DSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGV--KPTPKGLLLGVPVKT 91
D+ +L + + VN + WKA + N T+ + K L GV K +L
Sbjct: 6 DAPVLSKAFVDRVNRLNRGIWKAKYDGVMQNITLREAKRLNGVIKKNNNASILPKRRFTE 65
Query: 92 HDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSV 151
+ LP SFD+ AWP C TI +I DQ CGSCWA A A+SDRFC G+
Sbjct: 66 EEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHIS 125
Query: 152 NXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYP---- 207
P AW YF G+V++ C PY H + YP
Sbjct: 126 AGDLLACCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQ 185
Query: 208 ----TPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYE 260
TPKC C N + S ++Y + + +D M E++ GP EV+F VYE
Sbjct: 186 FNFDTPKCDYTCDDPTIPVVNYR--SWTSYALQGE-DDYMRELFFRGPFEVAFDVYE 239
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 102/237 (43%), Gaps = 13/237 (5%)
Query: 34 DSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGV--KPTPKGLLLGVPVKT 91
D+ +L + + VN + WKA + N T+ + K L GV K +L
Sbjct: 28 DAPVLSKAFVDRVNRLNRGIWKAKYDGVMQNITLREAKRLNGVIKKNNNASILPKRRFTE 87
Query: 92 HDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSV 151
+ LP SFD+ AWP C TI +I DQ CGSCWA A A+SDRFC G+
Sbjct: 88 EEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHIS 147
Query: 152 NXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYP---- 207
P AW YF G+V++ C PY H + YP
Sbjct: 148 AGDLLACCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQ 207
Query: 208 ----TPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYE 260
TPKC C N + S ++Y + + +D M E++ GP EV+F VYE
Sbjct: 208 FNFDTPKCNYTCDDPTIPVVNYR--SWTSYALQGE-DDYMRELFFRGPFEVAFDVYE 261
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 102/237 (43%), Gaps = 13/237 (5%)
Query: 34 DSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGV--KPTPKGLLLGVPVKT 91
D+ +L + + VN + WKA + N T+ + K L GV K +L
Sbjct: 5 DAPVLSKAFVDRVNRLNRGIWKAKYDGVMQNITLREAKRLNGVIKKNNNASILPKRRFTE 64
Query: 92 HDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSV 151
+ LP SFD+ AWP C TI +I DQ CGSCWA A A+SDRFC G+
Sbjct: 65 EEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHIS 124
Query: 152 NXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYP---- 207
P AW YF G+V++ C PY H + YP
Sbjct: 125 AGDLLACCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQ 184
Query: 208 ----TPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYE 260
TPKC C N + S ++Y + + +D M E++ GP EV+F VYE
Sbjct: 185 FNFDTPKCNYTCDDPTIPVVNYR--SWTSYALQGE-DDYMRELFFRGPFEVAFDVYE 238
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 82.4 bits (202), Expect = 3e-16, Method: Composition-based stats.
Identities = 35/45 (77%), Positives = 36/45 (80%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIH 142
LP SFDAR WPQC TI I DQG CGSCWAFGAVEA+SDR CIH
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIH 45
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 80.9 bits (198), Expect = 7e-16, Method: Composition-based stats.
Identities = 34/45 (75%), Positives = 36/45 (80%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIH 142
LP+SFDAR WP C TI I DQG CGSCWAFGAVEA+SDR CIH
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIH 45
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 13/103 (12%)
Query: 170 YPISAWRYFVHHGVVTEE-------CDPYF-----DSTGCSHPGCEPAYPTPKCVRKCVK 217
YP AW ++ G+V+ C PY S P C TPKC + C
Sbjct: 26 YPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEP 85
Query: 218 K-NQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVY 259
+ ++ KHY ++Y +++ +DIMAEIYKNGPVE +F+VY
Sbjct: 86 GYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY 128
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 13/103 (12%)
Query: 170 YPISAWRYFVHHGVVTEE-------CDPYF-----DSTGCSHPGCEPAYPTPKCVRKCVK 217
+P AW ++ G+V+ C PY S P C TPKC + C
Sbjct: 27 FPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCNKTCEP 86
Query: 218 K-NQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVY 259
+ ++ KH+ S+Y + ++ ++IMAEIYKNGPVE +F+VY
Sbjct: 87 GYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVY 129
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 64/171 (37%), Gaps = 20/171 (11%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGH----CGSCWAFGAVEALSDRFCIHFGMNLSLSVNX 153
LPKS+D R+ + I H CGSCWA + A++DR I ++
Sbjct: 1 LPKSWDWRNV--DGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLS 58
Query: 154 XXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKC-- 211
+S W Y HG+ E C+ Y C+ C
Sbjct: 59 VQNVIDCGNAGSCEGGNDLSVWDYAHQHGIPDETCNNYQ----AKDQECDKFNQCGTCNE 114
Query: 212 VRKC--VKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYE 260
++C ++ LWR + S+S E +MAEIY NGP+ E
Sbjct: 115 FKECHAIRNYTLWRVGDYGSLSG------REKMMAEIYANGPISCGIMATE 159
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 64/171 (37%), Gaps = 20/171 (11%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGH----CGSCWAFGAVEALSDRFCIHFGMNLSLSVNX 153
LPKS+D R+ + I H CGSCWA + A++DR I ++
Sbjct: 36 LPKSWDWRNV--DGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLS 93
Query: 154 XXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKC-- 211
+S W Y HG+ E C+ Y C+ C
Sbjct: 94 VQNVIDCGNAGSCEGGNDLSVWDYAHQHGIPDETCNNYQ----AKDQECDKFNQCGTCNE 149
Query: 212 VRKC--VKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYE 260
++C ++ LWR + S+S E +MAEIY NGP+ E
Sbjct: 150 FKECHAIRNYTLWRVGDYGSLSG------REKMMAEIYANGPISCGIMATE 194
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 71/179 (39%), Gaps = 33/179 (18%)
Query: 86 GVPVKTHDK-----SLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFC 140
G+P+KT + S++ P SFD W +S + +QG CGS WAF + A+ +
Sbjct: 99 GIPIKTREDLGLNASVRYPASFD----WRDQGMVSPVKNQGSCGSSWAFSSTGAIESQMK 154
Query: 141 IHFGMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGCSHP 200
I G SV+ + A+ Y +G + DS G
Sbjct: 155 IANGAGYDSSVSEQQLVDCVPNALGCSGGWMNDAFTYVAQNGGI--------DSEG---- 202
Query: 201 GCEPAYPTPKCVRKC-VKKNQLWRNSKHYSISAYRINSDP-EDIMAE-IYKNGPVEVSF 256
AYP C NQ+ +S Y S P E+++A+ + GPV V+F
Sbjct: 203 ----AYPYEMADGNCHYDPNQV-----AARLSGYVYLSGPDENMLADMVATKGPVAVAF 252
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 93/227 (40%), Gaps = 28/227 (12%)
Query: 41 SIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVK----PTPKGLLLGVPVKTHDKSL 96
+ +K +N K+ W A ++ T+G G P PK L ++ K L
Sbjct: 149 NFVKAINAIQKS-WTATTYMEYETLTLGDMIRRSGGHSRKIPRPKPAPLTAEIQ--QKIL 205
Query: 97 KLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXX 156
LP S+D R+ + +S + +Q CGSC++F ++ L R I + + ++
Sbjct: 206 FLPTSWDWRNV-HGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEV 264
Query: 157 XXXXXXXXXXXXXYP-ISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKC 215
+P + A +Y G+V E C PY TG P C
Sbjct: 265 VSCSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPY---TGTDSP--------------C 307
Query: 216 VKKNQLWR--NSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYE 260
K +R +S+++ + + + + E+ +GP+ V+F VY+
Sbjct: 308 KMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYD 354
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 8/133 (6%)
Query: 61 QFSNYTVGQFK--HLLGVKPTPKGLLLGVPVKTHDKSLKLPKSFDARSAWPQCSTISRIL 118
QF++ T +FK +L + L GVP + +++++ P D W + ++ +
Sbjct: 55 QFTDMTFEEFKAKYLTEMSRASDILSHGVPYEANNRAV--PDKID----WRESGYVTEVK 108
Query: 119 DQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYF 178
DQG+CGS WAF + ++ + ++S S +A++Y
Sbjct: 109 DQGNCGSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQYL 168
Query: 179 VHHGVVTEECDPY 191
G+ TE PY
Sbjct: 169 KQFGLETESSYPY 181
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 6/105 (5%)
Query: 92 HDKSLKLP-----KSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMN 146
H ++L++P K A W + + +S + DQG CGS W+F A+ + + G
Sbjct: 101 HPENLRMPYVSSKKPLAASVDW-RSNAVSEVKDQGQCGSSWSFSTTGAVEGQLALQRGRL 159
Query: 147 LSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPY 191
SLS + SA+ Y +G+++E PY
Sbjct: 160 TSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYIHDYGIMSESAYPY 204
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
LP S D W Q ++ + DQG CGSCWAF V ++ I G +SLS
Sbjct: 4 LPPSVD----WRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLS 52
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 99/237 (41%), Gaps = 33/237 (13%)
Query: 32 KLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTV-------GQFKHLLGVKPTPKGLL 84
+L SH + +K +N K+ W A ++ ++ G +L KP P
Sbjct: 142 RLYSH--HHNFVKAINSVQKS-WTATTYRRYEKLSIRDLIRRSGHSGRILRPKPAP---- 194
Query: 85 LGVPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG 144
+ + + L LP+S+D R+ + +S + +Q CGSC++F ++ L R I
Sbjct: 195 --ITDEIQQQILSLPESWDWRNV-RGINFVSPVRNQESCGSCYSFASLGMLEARIRILTN 251
Query: 145 MNLSLSVNXXXXXXXXXXXXXXXXXYP-ISAWRYFVHHGVVTEECDPYFDSTGCSHPGCE 203
+ + ++ +P + A +Y GVV E C PY +
Sbjct: 252 NSQTPILSPQEVVSCSPYAQGCDGGFPYLIAGKYAQDFGVVEENCFPYTATDA------- 304
Query: 204 PAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYE 260
P P C+R + +S++Y + + + + E+ K+GP+ V+F V++
Sbjct: 305 PCKPKENCLR--------YYSSEYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHD 353
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSV 151
LP S D W + ++ + QG CG+CWAF AV AL + + G +SLS
Sbjct: 4 LPDSVD----WREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSA 53
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXXX 157
LP D RSA + I QG CG CWAF A+ + I G+ +SLS
Sbjct: 1 LPSYVDWRSA----GAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDC 56
Query: 158 XXXXXXXXXXXXYPISAWRYFVHHGVV-TEECDPYFDSTG 196
Y +++ +++G + TEE PY G
Sbjct: 57 GRTQNTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDG 96
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSV 151
LP S D W + ++ + QG CG+CWAF AV AL + + G +SLS
Sbjct: 2 LPDSVD----WREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSA 51
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 48/140 (34%), Gaps = 29/140 (20%)
Query: 94 KSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNX 153
S+ +P D RS T++ I QG CGSCWAF V A + + +L LS
Sbjct: 7 NSVNVPSELDLRS----LRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQE 62
Query: 154 XXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVR 213
I Y +GVV E PY +C R
Sbjct: 63 LVDCASQHGCHGDTIPRGIE---YIQQNGVVEERSYPYVAR-------------EQRCRR 106
Query: 214 KCVKKNQLWRNSKHYSISAY 233
NS+HY IS Y
Sbjct: 107 P---------NSQHYGISNY 117
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSV 151
LP S D W + ++ + QG CG+CWAF AV AL + + G +SLS
Sbjct: 1 LPDSVD----WREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSA 50
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSV 151
LP S D W + ++ + QG CG+CWAF AV AL + + G +SLS
Sbjct: 1 LPDSVD----WREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSA 50
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSV 151
LP S D W + ++ + QG CG+CWAF AV AL + + G +SLS
Sbjct: 1 LPDSVD----WREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSA 50
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSV 151
LP S D W + ++ + QG CG+CWAF AV AL + + G +SLS
Sbjct: 2 LPDSVD----WREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSA 51
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 14/93 (15%)
Query: 62 FSNYTVGQFKHLLG----VKPTPKGLLLGVPVKTHDKSLKLPKSFDARSAWPQCSTISRI 117
F + T +F+ ++ KP KG + P+ + P+S D W + ++ +
Sbjct: 5 FGDMTSEEFRQVMNGFQNRKPR-KGKVFQEPL-----FYEAPRSVD----WREKGYVTPV 54
Query: 118 LDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
+QG CGSCWAF A AL + G +SLS
Sbjct: 55 KNQGQCGSCWAFSATGALEGQMFRKTGRLISLS 87
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSV 151
LP S D W + ++ + QG CG+CWAF AV AL + + G +SLS
Sbjct: 1 LPDSVD----WREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSA 50
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXXX 157
LPKS D W + ++ + +Q CGSCWAF A AL + G +SLS
Sbjct: 1 LPKSVD----WRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDC 56
Query: 158 XXXXXXXXXXXXYPISAWRYFVHHGVV-TEECDPY 191
+ A++Y +G + +EE PY
Sbjct: 57 SRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPY 91
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 99 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
P S D W + ++ + DQG CG CWAFGA A+ I G +S+S
Sbjct: 2 PASID----WRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVS 49
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 1/96 (1%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXXX 157
LP A W ++ + DQ CGSCWAF AL C G +SLS
Sbjct: 3 LPSELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDC 62
Query: 158 XXXXXXXXXXXXYPISAWRYFVHH-GVVTEECDPYF 192
A++Y + G+ +E+ PY
Sbjct: 63 SRAEGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYL 98
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 97 KLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
+ P+S D W + ++ + +QG CGSCWAF A AL + G +SLS
Sbjct: 1 EAPRSVD----WREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLS 50
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 99 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
P+S D W + ++ + +QG CGSCWAF A AL + G +SLS
Sbjct: 2 PRSVD----WREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLS 49
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXXX 157
LP D RS+ + I DQG CGSCWAF + A+ I G +SLS
Sbjct: 1 LPDYVDWRSS----GAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDC 56
Query: 158 XXXXXXXXXXXXYPISAWRYFVHHGVVTEECD-PYFDSTG 196
+ +++ +++G + E + PY G
Sbjct: 57 GRTQNTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEG 96
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 99 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
P+S D W + ++ + +QG CGSCWAF A AL + G +SLS
Sbjct: 2 PRSVD----WREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLS 49
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSV 151
LP S D W + ++ + QG CG+CWAF AV AL + + G ++LS
Sbjct: 1 LPDSVD----WREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSA 50
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 99 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
P+S D W + ++ + +QG CGSCWAF A AL + G +SLS
Sbjct: 2 PRSVD----WREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLS 49
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 99 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXXXX 158
P S D R + + +S + +QG CGSCW F AL I G LSL+
Sbjct: 2 PPSMDWRK---KGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCA 58
Query: 159 XXXXXXXXXXXYPISAWRYFVHH-GVVTEECDPY 191
P A+ Y ++ G++ E+ PY
Sbjct: 59 QNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPY 92
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXXX 157
LP S D W + + + +QG CGSCWAF V A+ I G +SLS
Sbjct: 3 LPDSID----WRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDC 58
Query: 158 XXXXXXXXXXXXYPISAWRYFVHHGVV-TEECDPYFDSTG 196
P A+++ V++G + +EE PY G
Sbjct: 59 TTANHGCRGGWMNP--AFQFIVNNGGINSEETYPYRGQDG 96
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 97 KLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
+ P S D R ++ + +QG CGSCWAF +V AL + G L+LS
Sbjct: 99 RAPDSVDYRKK----GYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLS 148
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 70/166 (42%), Gaps = 21/166 (12%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXXX 157
LP S+D R+ + +S + +Q CGSC++F ++ L R I + + ++
Sbjct: 1 LPTSWDWRNVH-GINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVV 59
Query: 158 XXXXXXXXXXXXYP-ISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCV 216
+P + A +Y G+V E C PY TG P C
Sbjct: 60 SCSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPY---TGTDSP--------------CK 102
Query: 217 KKNQLWR--NSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYE 260
K +R +S+++ + + + + E+ +GP+ V+F VY+
Sbjct: 103 MKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYD 148
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 97 KLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
+ P S D R ++ + +QG CGSCWAF +V AL + G L+LS
Sbjct: 2 RAPDSVDYRKK----GYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLS 51
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSV 151
LP S D W + ++ + QG CG+ WAF AV AL + + G +SLS
Sbjct: 99 LPDSVD----WREKGCVTEVKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSA 148
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 99 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXXXX 158
P+S D W + ++ + +Q CGSCWAF V + I G +SLS
Sbjct: 2 PESID----WREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLS--EQELLD 55
Query: 159 XXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTG 196
Y ++ +Y V +GV TE PY G
Sbjct: 56 CERRSHGCDGGYQTTSLQYVVDNGVHTEREYPYEKKQG 93
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 96 LKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
+ LP++ D W + ++ + QG CGSCWAF AV + I G + LS
Sbjct: 105 VNLPENVD----WRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELS 155
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 99 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
P S D R ++ + +QG CGSCWAF +V AL + G L+LS
Sbjct: 2 PDSIDYRKK----GYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLS 49
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
+P S D W + ++ + DQG CGSCWAF + A+ I +SLS
Sbjct: 2 VPASVD----WRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLS 50
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
LP D RS ++ I +Q CGSCWAF AV A+ I G +SLS
Sbjct: 1 LPSFVDWRSK----GAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLS 49
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Query: 62 FSNYTVGQFKHLLG----VKPTPKGLLLGVPVKTHDKSLKLPKSFDARSAWPQCSTISRI 117
F + T +F+ ++ KP KG + P+ + P+S D W + ++ +
Sbjct: 59 FGDMTSEEFRQVMNGLQNRKPR-KGKVFQEPL-----FYEAPRSVD----WREKGYVTPV 108
Query: 118 LDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
+QG CGS WAF A AL + G +SLS
Sbjct: 109 KNQGQCGSSWAFSATGALEGQMFRKTGRLISLS 141
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 99 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
P S D R ++ + +QG CGSCWAF +V AL + G L+LS
Sbjct: 1 PDSVDYRKK----GYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLS 48
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 99 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
P S D R ++ + +QG CGSCWAF +V AL + G L+LS
Sbjct: 2 PDSVDYREK----GYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLS 49
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 99 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
P S D R ++ + +QG CGSCWAF +V AL + G L+LS
Sbjct: 2 PDSVDYRKK----GYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLS 49
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 7/94 (7%)
Query: 99 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXXXX 158
P+S+D W + I+++ QG CGS WAF A A+ I G +SLS
Sbjct: 3 PESWD----WSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCV 58
Query: 159 XXXXXXXXXXXYPISAWRYFVHHGVVTEECD-PY 191
Y W V HG + E D PY
Sbjct: 59 DESEGCYNGWHYQSFEW--VVKHGGIASEADYPY 90
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
LP++ D W + ++ + QG CGSCWAF AV + I G + LS
Sbjct: 1 LPENVD----WRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELS 49
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSV 151
LP S D W + ++ + QG CG+ WAF AV AL + + G +SLS
Sbjct: 3 LPDSVD----WREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSA 52
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
LP+ D W + ++ + +QG CGSCWAF V + I G +SLS
Sbjct: 1 LPEQID----WRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLS 49
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
LP++ D W + ++ + QG CGSCWAF AV + I G + LS
Sbjct: 1 LPENVD----WRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELS 49
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSV 151
LP S D W + ++ + QG CG+ WAF AV AL + + G +SLS
Sbjct: 1 LPDSVD----WREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSA 50
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSV 151
LP S D W + ++ + QG CG+ WAF AV AL + + G +SLS
Sbjct: 2 LPDSVD----WREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSA 51
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSV 151
LP S D W + ++ + QG CG+ WAF AV AL + + G +SLS
Sbjct: 1 LPDSVD----WREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSA 50
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 92 HDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG 144
+D + +P+ D W Q ++ + +QG CGS WAF AV + I G
Sbjct: 146 NDGDVNIPEYVD----WRQKGAVTPVKNQGSCGSAWAFSAVSTIESIIKIRTG 194
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Query: 62 FSNYTVGQFKHLLG----VKPTPKGLLLGVPVKTHDKSLKLPKSFDARSAWPQCSTISRI 117
F + T +F+ ++ KP KG + P+ + P+S D W + ++ +
Sbjct: 63 FGDMTSEEFRQVMNGFQNRKPR-KGKVFQEPL-----FYEAPRSVD----WREKGYVTPV 112
Query: 118 LDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
+QG CGS WAF A AL + G +SLS
Sbjct: 113 KNQGQCGSXWAFSATGALEGQMFRKTGRLISLS 145
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 97 KLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
+ P+S D W + ++ + +QG CGS WAF A AL + G +SLS
Sbjct: 1 EAPRSVD----WREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLS 50
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 94 KSLKLPKSFD-ARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
K + ++FD A W S ++ + DQ +CGSCWAF ++ ++ ++ I ++LS
Sbjct: 9 KKYRGEENFDHAAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLS 66
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 99 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
P+S D W + ++ + +QG CGS WAF A AL + G +SLS
Sbjct: 2 PRSVD----WREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLS 49
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 99 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
P D R Q T++ I QG CGSCWAF V A + + +L L+
Sbjct: 11 PAEIDLR----QMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLA 58
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
LP+ D W + ++ + +QG CGSCWAF V + I G +SLS
Sbjct: 1 LPEQID----WRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLS 49
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXXX 157
LPKS D W + ++ + +Q CGS WAF A AL + G +SLS
Sbjct: 1 LPKSVD----WRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDC 56
Query: 158 XXXXXXXXXXXXYPISAWRYFVHHGVV-TEECDPY 191
+ A++Y +G + +EE PY
Sbjct: 57 SRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPY 91
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 114 ISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
++ + +QG CGSCWAF +V AL + G L+LS
Sbjct: 11 VTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLS 47
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 99 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
P D R Q T++ I QG CGSCWAF V A + + +L L+
Sbjct: 11 PAEIDLR----QMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLA 58
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 99 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
P+S D W + ++ + +QG CGS WAF A AL + G +SLS
Sbjct: 2 PRSVD----WREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLS 49
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 99 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
P+S D W + ++ + +QG CGS WAF A AL + G +SLS
Sbjct: 2 PRSVD----WREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLS 49
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 99 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
P+S D W + ++ + +QG CGS WAF A AL + G +SLS
Sbjct: 2 PRSVD----WREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLS 49
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXXX 157
LP D RS+ + I DQG CGS WAF + A+ I G +SLS
Sbjct: 1 LPDYVDWRSS----GAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDC 56
Query: 158 XXXXXXXXXXXXYPISAWRYFVHHGVVTEECD-PYFDSTG 196
+ +++ +++G + E + PY G
Sbjct: 57 GRTQNTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEG 96
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 99 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
P S D R ++ + +QG CGSCWAF +V AL + G L+L+
Sbjct: 2 PDSIDYRKK----GYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLA 49
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEAL 135
+P S D W Q ++ + +QG CGSCW F +V A+
Sbjct: 1 IPTSID----WRQKGAVTPVRNQGGCGSCWTFSSVAAV 34
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 108 WPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG 144
W Q ++ + +QG CGSCWAF AV + I G
Sbjct: 7 WRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTG 43
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 108 WPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG 144
W Q ++ + +QG CGSCWAF AV + I G
Sbjct: 7 WRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTG 43
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 108 WPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG 144
W Q ++ + +QG CGSCWAF AV + I G
Sbjct: 7 WRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTG 43
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXXX 157
LP D RSA + I QG CG WAF A+ + I G +SLS
Sbjct: 1 LPSYVDWRSA----GAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDC 56
Query: 158 XXXXXXXXXXXXYPISAWRYFVHHGVV-TEECDPY 191
Y +++ ++ G + TEE PY
Sbjct: 57 GRTQNTRGCDGGYITDGFQFIINDGGINTEENYPY 91
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 34.3 bits (77), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 108 WPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
W + ++ + DQG CGSCWAF + + ++ + +SLS
Sbjct: 7 WREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLS 49
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 108 WPQCSTISRILDQGHCGSCWAFGAV 132
W ++ + DQG CGSCWAF A+
Sbjct: 7 WRARGAVTAVKDQGQCGSCWAFSAI 31
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 33.9 bits (76), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 108 WPQCSTISRILDQGHCGSCWAFGAV 132
W ++ + DQG CGSCWAF A+
Sbjct: 7 WRARGAVTAVKDQGQCGSCWAFSAI 31
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 33.9 bits (76), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 108 WPQCSTISRILDQGHCGSCWAFGAV 132
W ++ + DQG CGSCWAF A+
Sbjct: 7 WRARGAVTAVKDQGQCGSCWAFSAI 31
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 33.9 bits (76), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 108 WPQCSTISRILDQGHCGSCWAFGAV 132
W ++ + DQG CGSCWAF A+
Sbjct: 7 WRARGAVTAVKDQGQCGSCWAFSAI 31
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 99 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG 144
P +D RS ++++ DQG CGSCWAF + ++ ++ G
Sbjct: 2 PPEWDWRSK----GAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQG 43
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 94 KSLKLPKSFD-ARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
K + ++FD A W S ++ + DQ +CGS WAF ++ ++ ++ I ++LS
Sbjct: 8 KKYRGEENFDHAAYDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLS 65
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 99 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
P D R Q T++ I QG CGS WAF V A + + +L L+
Sbjct: 91 PAEIDLR----QMRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLA 138
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
LP+ D W + + +QG CGSCWAF V + I G +SLS
Sbjct: 1 LPEHVD----WRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLS 49
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 108 WPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIH 142
W ++ + DQ CGSCWAF +V ++ ++ I
Sbjct: 26 WRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIR 60
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 99 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
P+S D W + ++ + +QG CG+ +AF A AL + G +SLS
Sbjct: 2 PRSVD----WREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLS 49
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 99 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
P D R Q T++ I QG CGS WAF V A + + +L L+
Sbjct: 11 PAEIDLR----QMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLA 58
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLS 150
LP+S D W ++ + QG+C SCWAF V + I G + LS
Sbjct: 1 LPESVD----WRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELS 49
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 108 WPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG 144
W Q ++ + +QG CGS WAF AV + I G
Sbjct: 7 WRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTG 43
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 108 WPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG 144
W Q ++ + +QG CGS WAF AV + I G
Sbjct: 7 WRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTG 43
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 108 WPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG 144
W Q ++ + +QG CGS WAF AV + I G
Sbjct: 7 WRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTG 43
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 99 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXXXX 158
P+S D W ++ + +QG CGS WAF + + I G L LS
Sbjct: 2 PQSID----WRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELS--EQELVD 55
Query: 159 XXXXXXXXXXXYPISAWRYFVHHGVVTEECDPY 191
Y ++ +Y ++GV T + PY
Sbjct: 56 CDKHSYGCKGGYQTTSLQYVANNGVHTSKVYPY 88
>pdb|3VE0|I Chain I, Crystal Structure Of Sudan Ebolavirus Glycoprotein (Strain
Boniface) Bound To 16f6
Length = 298
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 29/156 (18%)
Query: 15 LGVISSQTFAEGVVSKLKLDSHILQDSIIKEVNEN----------PKA----GWKAARNP 60
LGV+++ T + +L H+ +K V N P A G+++ P
Sbjct: 20 LGVVTNSTLEVTEIDQLVCKDHLASTDQLKSVGLNLEGSGVSTDIPSATKRWGFRSGVPP 79
Query: 61 QFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQ 120
+ +Y G++ + +K D S LP D +P+C + +
Sbjct: 80 KVVSYEAGEWAENC----------YNLEIKKPDGSECLPPPPDGVRGFPRCRYVHKAQGT 129
Query: 121 GHCGSCWAFGAVEA--LSDRFC---IHFGMNLSLSV 151
G C +AF A L DR I+ G+N + V
Sbjct: 130 GPCPGDYAFHKDGAFFLYDRLASTVIYRGVNFAEGV 165
>pdb|3S88|I Chain I, Crystal Structure Of Sudan Ebolavirus Glycoprotein (Strain
Gulu) Bound To 16f6
Length = 298
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 29/156 (18%)
Query: 15 LGVISSQTFAEGVVSKLKLDSHILQDSIIKEVNEN----------PKA----GWKAARNP 60
LGV+++ T + +L H+ +K V N P A G+++ P
Sbjct: 20 LGVVTNSTLEVTEIDQLVCKDHLASTDQLKSVGLNLEGSGVSTDIPSATKRWGFRSGVPP 79
Query: 61 QFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQ 120
+ +Y G++ + +K D S LP D +P+C + +
Sbjct: 80 KVVSYEAGEWAENC----------YNLEIKKPDGSECLPPPPDGVRGFPRCRYVHKAQGT 129
Query: 121 GHCGSCWAFGAVEA--LSDRFC---IHFGMNLSLSV 151
G C +AF A L DR I+ G+N + V
Sbjct: 130 GPCPGDYAFHKDGAFFLYDRLASTVIYRGVNFAEGV 165
>pdb|1W78|A Chain A, E.Coli Folc In Complex With Dhpp And Adp
pdb|1W7K|A Chain A, E.Coli Folc In Complex With Adp, Without Folate Substrate
Length = 422
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 15/77 (19%)
Query: 29 SKLKLDSHILQDSI--------IKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTP 80
S L++ + ++D I + V+E+P+ + A NP + Y G+ K L P
Sbjct: 268 SGLEVSENAIRDGIASAILPGRFQIVSESPRVIFDVAHNPHAAEYLTGRMKAL------P 321
Query: 81 K-GLLLGVPVKTHDKSL 96
K G +L V HDK +
Sbjct: 322 KNGRVLAVIGMLHDKDI 338
>pdb|3CSY|I Chain I, Crystal Structure Of The Trimeric Prefusion Ebola Virus
Glycoprotein In Complex With A Neutralizing Antibody
From A Human Survivor
pdb|3CSY|K Chain K, Crystal Structure Of The Trimeric Prefusion Ebola Virus
Glycoprotein In Complex With A Neutralizing Antibody
From A Human Survivor
pdb|3CSY|M Chain M, Crystal Structure Of The Trimeric Prefusion Ebola Virus
Glycoprotein In Complex With A Neutralizing Antibody
From A Human Survivor
pdb|3CSY|O Chain O, Crystal Structure Of The Trimeric Prefusion Ebola Virus
Glycoprotein In Complex With A Neutralizing Antibody
From A Human Survivor
Length = 334
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 53 GWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDKSLKLPKSFDARSAWPQCS 112
G+++ P+ NY G++ + +K D S LP + D +P+C
Sbjct: 72 GFRSGVPPKVVNYEAGEWAENC----------YNLEIKKPDGSECLPAAPDGIRGFPRCR 121
Query: 113 TISRILDQGHCGSCWAF 129
+ ++ G C +AF
Sbjct: 122 YVHKVSGTGPCAGDFAF 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,259,321
Number of Sequences: 62578
Number of extensions: 318622
Number of successful extensions: 984
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 831
Number of HSP's gapped (non-prelim): 113
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)