Query 023657
Match_columns 279
No_of_seqs 198 out of 1504
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 05:40:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023657.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023657hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 2.6E-51 5.6E-56 355.7 16.2 225 20-275 76-306 (372)
2 PTZ00203 cathepsin L protease; 100.0 2.4E-46 5.2E-51 338.0 19.5 218 23-266 46-274 (348)
3 KOG1543 Cysteine proteinase Ca 100.0 2.8E-45 6E-50 328.8 19.5 215 28-271 40-262 (325)
4 PTZ00021 falcipain-2; Provisio 100.0 3.4E-45 7.3E-50 340.0 18.6 221 20-269 174-413 (489)
5 PTZ00200 cysteine proteinase; 100.0 6E-44 1.3E-48 330.5 18.0 212 23-266 134-374 (448)
6 cd02620 Peptidase_C1A_Cathepsi 100.0 1.5E-38 3.3E-43 274.9 15.6 163 99-266 1-171 (236)
7 cd02621 Peptidase_C1A_Cathepsi 100.0 7.1E-38 1.5E-42 272.0 14.9 157 98-271 1-167 (243)
8 KOG1544 Predicted cysteine pro 100.0 2.1E-39 4.6E-44 278.3 3.0 237 32-274 142-390 (470)
9 PTZ00049 cathepsin C-like prot 100.0 1.4E-36 3.1E-41 288.5 16.1 173 95-269 378-589 (693)
10 cd02698 Peptidase_C1A_Cathepsi 100.0 3.2E-36 6.9E-41 260.8 16.2 159 98-270 1-171 (239)
11 cd02248 Peptidase_C1A Peptidas 100.0 9E-35 1.9E-39 246.9 14.9 146 99-270 1-150 (210)
12 PTZ00364 dipeptidyl-peptidase 100.0 8.3E-35 1.8E-39 273.6 14.9 160 95-269 202-375 (548)
13 PF00112 Peptidase_C1: Papain 100.0 3.6E-32 7.8E-37 231.7 12.2 151 98-271 1-158 (219)
14 cd02619 Peptidase_C1 C1 Peptid 100.0 4E-29 8.8E-34 213.3 14.4 144 101-266 1-152 (223)
15 smart00645 Pept_C1 Papain fami 99.9 1.8E-27 3.9E-32 196.4 8.5 90 98-192 1-91 (174)
16 PTZ00462 Serine-repeat antigen 99.9 3.7E-26 8E-31 223.5 14.1 153 108-266 538-706 (1004)
17 COG4870 Cysteine protease [Pos 99.2 9.6E-12 2.1E-16 110.4 1.6 94 95-194 96-195 (372)
18 PF08246 Inhibitor_I29: Cathep 98.4 2.1E-07 4.6E-12 62.4 3.2 49 21-70 7-58 (58)
19 PF08127 Propeptide_C1: Peptid 98.0 5.5E-06 1.2E-10 51.1 3.4 38 39-79 2-39 (41)
20 cd00585 Peptidase_C1B Peptidas 98.0 6.3E-06 1.4E-10 77.0 4.7 79 114-192 54-159 (437)
21 PF03051 Peptidase_C1_2: Pepti 97.9 3.6E-05 7.8E-10 72.0 7.0 79 114-192 55-160 (438)
22 smart00848 Inhibitor_I29 Cathe 97.7 1.2E-05 2.6E-10 53.3 1.2 46 23-69 9-57 (57)
23 COG3579 PepC Aminopeptidase C 95.1 0.033 7.2E-07 49.8 4.8 78 115-192 58-162 (444)
24 KOG4128 Bleomycin hydrolases a 91.6 0.16 3.6E-06 45.4 3.0 78 114-191 62-168 (457)
25 PF11395 DUF2873: Protein of u 82.5 1.4 3E-05 26.1 2.2 23 3-25 15-37 (43)
26 PF07172 GRP: Glycine rich pro 69.2 4.7 0.0001 29.6 2.5 9 1-9 1-9 (95)
27 PF08475 Baculo_VP91_N: Viral 66.3 4.6 9.9E-05 33.3 2.2 20 29-49 26-45 (183)
28 PF13956 Ibs_toxin: Toxin Ibs, 63.3 4.4 9.5E-05 20.1 0.9 13 2-14 2-14 (19)
29 PF12273 RCR: Chitin synthesis 58.2 7.4 0.00016 30.2 2.0 15 5-19 3-17 (130)
30 PLN03207 stomagen; Provisional 49.1 16 0.00034 26.9 2.2 44 5-48 14-57 (113)
31 PRK00523 hypothetical protein; 40.6 36 0.00078 23.6 2.9 17 32-48 34-50 (72)
32 PF08139 LPAM_1: Prokaryotic m 40.1 17 0.00037 19.7 1.0 14 2-15 7-20 (25)
33 PF01754 zf-A20: A20-like zinc 38.0 21 0.00045 19.4 1.1 19 109-127 6-24 (25)
34 PF12273 RCR: Chitin synthesis 37.8 27 0.00059 27.0 2.3 18 4-21 5-22 (130)
35 PRK01844 hypothetical protein; 34.7 51 0.0011 22.8 2.9 17 32-48 33-49 (72)
36 PF05887 Trypan_PARP: Procycli 33.2 14 0.00031 28.7 0.0 22 1-22 1-22 (143)
37 PF06692 MNSV_P7B: Melon necro 29.4 60 0.0013 21.2 2.4 13 6-18 16-28 (61)
38 COG5510 Predicted small secret 28.1 64 0.0014 20.0 2.2 10 1-10 2-11 (44)
39 PF12385 Peptidase_C70: Papain 27.7 81 0.0018 25.5 3.4 26 238-263 97-122 (166)
40 PF05568 ASFV_J13L: African sw 27.1 25 0.00054 27.8 0.4 15 34-48 59-73 (189)
41 cd00585 Peptidase_C1B Peptidas 26.7 81 0.0018 29.9 3.8 32 239-274 294-329 (437)
42 PF10717 ODV-E18: Occlusion-de 26.4 73 0.0016 22.7 2.6 14 9-22 33-46 (85)
43 PF03672 UPF0154: Uncharacteri 25.4 62 0.0013 21.9 2.0 17 32-48 26-42 (64)
44 smart00259 ZnF_A20 A20-like zi 24.6 39 0.00084 18.5 0.8 19 109-127 7-25 (26)
45 PHA03072 putative viral membra 23.7 66 0.0014 26.4 2.2 18 140-157 133-150 (190)
46 COG2143 Thioredoxin-related pr 22.5 66 0.0014 26.1 2.0 21 1-21 2-22 (182)
47 PRK10081 entericidin B membran 22.0 80 0.0017 20.0 1.9 6 2-7 3-8 (48)
48 KOG2735 Phosphatidylserine syn 21.8 50 0.0011 30.7 1.4 21 125-145 374-394 (466)
49 PF02553 CbiN: Cobalt transpor 21.8 1.1E+02 0.0025 21.3 2.9 20 1-20 1-20 (74)
50 PHA02909 hypothetical protein; 21.5 72 0.0016 20.9 1.7 14 1-14 35-48 (72)
51 PF05543 Peptidase_C47: Stapho 20.9 1.3E+02 0.0029 24.7 3.5 57 119-185 18-82 (175)
52 TIGR01165 cbiN cobalt transpor 20.1 1.2E+02 0.0026 22.1 2.7 9 41-49 42-50 (91)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-51 Score=355.72 Aligned_cols=225 Identities=26% Similarity=0.428 Sum_probs=177.0
Q ss_pred hhccccc-ccchhhhccccChHHH--HHHHHcCCCCceEeecCCCCCCCCHHHHHhh-hCCCCCCCCCCCCCCccccccc
Q 023657 20 SQTFAEG-VVSKLKLDSHILQDSI--IKEVNENPKAGWKAARNPQFSNYTVGQFKHL-LGVKPTPKGLLLGVPVKTHDKS 95 (279)
Q Consensus 20 ~~~~~~~-~~~~~~~~~~i~~~~~--i~~~N~~~~~~~~~g~n~~fsd~t~~ef~~~-~~~~~~~~~~~~~~~~~~~~~~ 95 (279)
..+.+.| +..|...|..||..++ +++++.+...+-+.|+| +|||||+|||+++ ++.+..................
T Consensus 76 ~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvt-qFSDlT~eEFkk~~l~~~~~~~~~~~~~~~~~~~~~ 154 (372)
T KOG1542|consen 76 IKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVT-QFSDLTEEEFKKIYLGVKRRGSKLPGDAAEAPIEPG 154 (372)
T ss_pred HhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCcc-chhhcCHHHHHHHhhccccccccCccccccCcCCCC
Confidence 3445555 4456677899999986 55577754458899999 9999999999994 4444321111011111112445
Q ss_pred CCCCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHHHH
Q 023657 96 LKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAW 175 (279)
Q Consensus 96 ~~lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~ 175 (279)
..||++||||++ |.||||||||.||||||||+++++|.++.|++++.+.||||||+||+. +++||+||.+..||
T Consensus 155 ~~lP~~fDWR~k----gaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~--~d~gC~GGl~~nA~ 228 (372)
T KOG1542|consen 155 ESLPESFDWRDK----GAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDS--CDNGCNGGLMDNAF 228 (372)
T ss_pred CCCCcccchhcc----CCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccC--cCCcCCCCChhHHH
Confidence 689999999999 889999999999999999999999999999999999999999999996 78999999999999
Q ss_pred HHHHh-hcccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eCCCHHHHHHHHHhCCCeE
Q 023657 176 RYFVH-HGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGPVE 253 (279)
Q Consensus 176 ~y~~~-~G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~ik~~l~~~GPv~ 253 (279)
+|+.+ .|+..|++|||++.. .+.|.... ....+.|.+|. ++.||++|.+.|.++|||+
T Consensus 229 ~~~~~~gGL~~E~dYPY~g~~----------------~~~C~~~~----~~~~v~I~~f~~l~~nE~~ia~wLv~~GPi~ 288 (372)
T KOG1542|consen 229 KYIKKAGGLEKEKDYPYTGKK----------------GNQCHFDK----SKIVVSIKDFSMLSNNEDQIAAWLVTFGPLS 288 (372)
T ss_pred HHHHHhCCccccccCCccccC----------------CCccccch----hhceEEEeccEecCCCHHHHHHHHHhcCCeE
Confidence 99655 589999999998762 22666544 25567888888 8889999999999999999
Q ss_pred EEEEecccCcCCcccccccccC
Q 023657 254 VSFTVYEVKQTLTLYSSTDFSA 275 (279)
Q Consensus 254 v~i~v~~~F~~Y~iY~~g~~~~ 275 (279)
|+|++ ..++. |.+||+..
T Consensus 289 vgiNa-~~mQ~---YrgGV~~P 306 (372)
T KOG1542|consen 289 VGINA-KPMQF---YRGGVSCP 306 (372)
T ss_pred EEEch-HHHHH---hcccccCC
Confidence 99996 34554 56777655
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=2.4e-46 Score=338.01 Aligned_cols=218 Identities=20% Similarity=0.387 Sum_probs=164.5
Q ss_pred cccccc-chhhhccccChHH--HHHHHHcCCCCceEeecCCCCCCCCHHHHHh-hhCCCC-CCCCCC-CCCCccc-cccc
Q 023657 23 FAEGVV-SKLKLDSHILQDS--IIKEVNENPKAGWKAARNPQFSNYTVGQFKH-LLGVKP-TPKGLL-LGVPVKT-HDKS 95 (279)
Q Consensus 23 ~~~~~~-~~~~~~~~i~~~~--~i~~~N~~~~~~~~~g~n~~fsd~t~~ef~~-~~~~~~-~~~~~~-~~~~~~~-~~~~ 95 (279)
.+.|.. .|+..|+.||.++ +|++||++ +.+|++|+| +|+|||.|||++ +++... ...... ....... ....
T Consensus 46 ~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~-~~~~~lg~N-~FaDlT~eEf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 123 (348)
T PTZ00203 46 QRAYGTLTEEQQRLANFERNLELMREHQAR-NPHARFGIT-KFFDLSEAEFAARYLNGAAYFAAAKQHAGQHYRKARADL 123 (348)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCeEEecc-ccccCCHHHHHHHhcCCCccccccccccccccccccccc
Confidence 455544 5777899999997 49999985 579999999 999999999997 443221 110100 0000000 0112
Q ss_pred CCCCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHHHH
Q 023657 96 LKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAW 175 (279)
Q Consensus 96 ~~lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~ 175 (279)
.++|++||||++ |.|+||||||.||||||||+++++|++++|++++.+.||+|||+||+. .+.||+||++..||
T Consensus 124 ~~lP~~~DWR~~----g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~--~~~GC~GG~~~~a~ 197 (348)
T PTZ00203 124 SAVPDAVDWREK----GAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDH--VDNGCGGGLMLQAF 197 (348)
T ss_pred ccCCCCCcCCcC----CCCCCccccCCCccHHHHhhHHHHHHHHHHhcCCCccCCHHHHHhccC--CCCCCCCCCHHHHH
Confidence 378999999998 789999999999999999999999999999999999999999999986 46899999999999
Q ss_pred HHHHhh---cccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eCCCHHHHHHHHHhCCC
Q 023657 176 RYFVHH---GVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGP 251 (279)
Q Consensus 176 ~y~~~~---G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~ik~~l~~~GP 251 (279)
+|++++ |+++|++|||.+.++ ..+ .|..... ....+.+.+|. +..++++|+++|+++||
T Consensus 198 ~yi~~~~~ggi~~e~~YPY~~~~~----------~~~----~C~~~~~---~~~~~~i~~~~~i~~~e~~~~~~l~~~GP 260 (348)
T PTZ00203 198 EWVLRNMNGTVFTEKSYPYVSGNG----------DVP----ECSNSSE---LAPGARIDGYVSMESSERVMAAWLAKNGP 260 (348)
T ss_pred HHHHHhcCCCCCccccCCCccCCC----------CCC----cCCCCcc---cccceEecceeecCcCHHHHHHHHHhCCC
Confidence 999864 588999999976421 011 2332110 01223566776 66688999999999999
Q ss_pred eEEEEEecccCcCCc
Q 023657 252 VEVSFTVYEVKQTLT 266 (279)
Q Consensus 252 v~v~i~v~~~F~~Y~ 266 (279)
|+|+|++. +|++|+
T Consensus 261 v~v~i~a~-~f~~Y~ 274 (348)
T PTZ00203 261 ISIAVDAS-SFMSYH 274 (348)
T ss_pred EEEEEEhh-hhcCcc
Confidence 99999984 888766
No 3
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-45 Score=328.79 Aligned_cols=215 Identities=35% Similarity=0.595 Sum_probs=170.7
Q ss_pred cchhhhccccChHHH--HHHHHcCCCCceEeecCCCCCCCCHHHHHhh-hCCCCCCCCCCCCCCcccccccCCCCCcccc
Q 023657 28 VSKLKLDSHILQDSI--IKEVNENPKAGWKAARNPQFSNYTVGQFKHL-LGVKPTPKGLLLGVPVKTHDKSLKLPKSFDA 104 (279)
Q Consensus 28 ~~~~~~~~~i~~~~~--i~~~N~~~~~~~~~g~n~~fsd~t~~ef~~~-~~~~~~~~~~~~~~~~~~~~~~~~lP~~~D~ 104 (279)
..|...|+.+|.+++ ++.+|.....+|.+++| +|+|++.+|+++. .+.++... ... .........++|++|||
T Consensus 40 ~~~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n-~~~d~~~ee~~~~~~~~~~~~~-~~~--~~~~~~~~~~~p~s~Dw 115 (325)
T KOG1543|consen 40 RVEKKARRAIFKENLQKIESHNLKYVLSFLMGVN-QFADLTTEEFKRKKTGKKPPEI-KRD--KFTEKLDGDDLPDSFDW 115 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhceeeeeccc-cccccchHHHHHhhccccCccc-ccc--ccccccchhhCCCCccc
Confidence 344555678888864 88899866789999999 9999999999984 44433222 111 11112234689999999
Q ss_pred ccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhC-CccccchhhhhhhcCCCCCCCCCCCChHHHHHHHHhhcc
Q 023657 105 RSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG-MNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGV 183 (279)
Q Consensus 105 R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~-~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~y~~~~G~ 183 (279)
|++| ++++|||||+.||||||||++++||++++|+++ ..+.||+|||+||+.. +++||+||++..||+|++++|+
T Consensus 116 R~~~---~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~-~~~GC~GG~~~~A~~yi~~~G~ 191 (325)
T KOG1543|consen 116 RDKG---AVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGE-CGDGCNGGEPKNAFKYIKKNGG 191 (325)
T ss_pred cccC---CcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCC-CCCCcCCCCHHHHHHHHHHhCC
Confidence 9996 457889999999999999999999999999999 9999999999999984 6889999999999999999998
Q ss_pred cc-cccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eCCCHHHHHHHHHhCCCeEEEEEeccc
Q 023657 184 VT-EECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGPVEVSFTVYEV 261 (279)
Q Consensus 184 ~~-e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~ik~~l~~~GPv~v~i~v~~~ 261 (279)
++ +.+|||.+.. .+|..... .....+.++. ++.++++|+.+|+++|||+|+|.++++
T Consensus 192 ~t~~~~Ypy~~~~-----------------~~C~~~~~----~~~~~~~~~~~~~~~e~~i~~~v~~~GPv~v~~~a~~~ 250 (325)
T KOG1543|consen 192 VTECENYPYIGKD-----------------GTCKSNKK----DKTVTIKGFYNVPANEEAIAEAVAKNGPVSVAIDAYED 250 (325)
T ss_pred CCCCcCCCCcCCC-----------------CCccCCCc----cceeEeeeeeecCcCHHHHHHHHHhcCCeEEEEeehhh
Confidence 88 9999997651 14444331 2333444444 777899999999999999999999999
Q ss_pred CcCCc--ccccc
Q 023657 262 KQTLT--LYSST 271 (279)
Q Consensus 262 F~~Y~--iY~~g 271 (279)
|+.|+ ||.+.
T Consensus 251 F~~Y~~GVy~~~ 262 (325)
T KOG1543|consen 251 FSLYKGGVYAEE 262 (325)
T ss_pred hhhccCceEeCC
Confidence 99877 66554
No 4
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=3.4e-45 Score=340.05 Aligned_cols=221 Identities=23% Similarity=0.374 Sum_probs=166.8
Q ss_pred hhcccccccc-hhhhccccChHH--HHHHHHcCCCCceEeecCCCCCCCCHHHHHh-hhCCCCC-CCCC-C--CC-CCc-
Q 023657 20 SQTFAEGVVS-KLKLDSHILQDS--IIKEVNENPKAGWKAARNPQFSNYTVGQFKH-LLGVKPT-PKGL-L--LG-VPV- 89 (279)
Q Consensus 20 ~~~~~~~~~~-~~~~~~~i~~~~--~i~~~N~~~~~~~~~g~n~~fsd~t~~ef~~-~~~~~~~-~~~~-~--~~-~~~- 89 (279)
..+.+.|... |...|+.||.++ .|++||++.+.+|++|+| +|+|||.|||++ +++.... .... . .. ...
T Consensus 174 ~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiN-qFsDlT~EEF~~~~l~~~~~~~~~~~~~~~~~~~~~ 252 (489)
T PTZ00021 174 KEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMN-RFGDLSFEEFKKKYLTLKSFDFKSNGKKSPRVINYD 252 (489)
T ss_pred HHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEecc-ccccCCHHHHHHHhcccccccccccccccccccccc
Confidence 3456666554 556788999997 499999866689999999 999999999998 4443311 0100 0 00 000
Q ss_pred ---ccc-cc-cCCCCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCC
Q 023657 90 ---KTH-DK-SLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGD 164 (279)
Q Consensus 90 ---~~~-~~-~~~lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~ 164 (279)
... +. ....|+++|||+. |.|+||||||.||||||||+++++|++++|+++..+.||+|||+||+. .+.
T Consensus 253 ~~~~~~~~~~~~~~P~s~DWR~~----g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~v~LSeQqLVDCs~--~n~ 326 (489)
T PTZ00021 253 DVIKKYKPKDATFDHAKYDWRLH----NGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQELVDCSF--KNN 326 (489)
T ss_pred ccccccccccccCCccccccccC----CCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCcccCHHHHhhhcc--CCC
Confidence 000 11 1124999999998 779999999999999999999999999999999999999999999986 478
Q ss_pred CCCCCChHHHHHHHHhh-cccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eCCCHHHH
Q 023657 165 GCDGGYPISAWRYFVHH-GVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDI 242 (279)
Q Consensus 165 gC~GG~~~~a~~y~~~~-G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~i 242 (279)
||+||++..||+|+.++ |+++|++|||++.. .+ .|.... ....+.+.+|. ++ +++|
T Consensus 327 GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~------------~~----~C~~~~----~~~~~~i~~y~~i~--~~~l 384 (489)
T PTZ00021 327 GCYGGLIPNAFEDMIELGGLCSEDDYPYVSDT------------PE----LCNIDR----CKEKYKIKSYVSIP--EDKF 384 (489)
T ss_pred CCCCcchHhhhhhhhhccccCcccccCccCCC------------CC----cccccc----ccccceeeeEEEec--HHHH
Confidence 99999999999999776 89999999997641 11 222111 01234566666 54 4789
Q ss_pred HHHHHhCCCeEEEEEecccCcCCc--ccc
Q 023657 243 MAEIYKNGPVEVSFTVYEVKQTLT--LYS 269 (279)
Q Consensus 243 k~~l~~~GPv~v~i~v~~~F~~Y~--iY~ 269 (279)
|++|+.+|||+|+|.++.+|++|+ ||+
T Consensus 385 k~al~~~GPVsv~i~a~~~f~~YkgGIy~ 413 (489)
T PTZ00021 385 KEAIRFLGPISVSIAVSDDFAFYKGGIFD 413 (489)
T ss_pred HHHHHhcCCeEEEEEeecccccCCCCcCC
Confidence 999999999999999988898876 554
No 5
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=6e-44 Score=330.54 Aligned_cols=212 Identities=25% Similarity=0.419 Sum_probs=158.4
Q ss_pred ccccc-cchhhhccccChHHH--HHHHHcCCCCceEeecCCCCCCCCHHHHHhhh-CCCCCCCC----CC--------CC
Q 023657 23 FAEGV-VSKLKLDSHILQDSI--IKEVNENPKAGWKAARNPQFSNYTVGQFKHLL-GVKPTPKG----LL--------LG 86 (279)
Q Consensus 23 ~~~~~-~~~~~~~~~i~~~~~--i~~~N~~~~~~~~~g~n~~fsd~t~~ef~~~~-~~~~~~~~----~~--------~~ 86 (279)
.+.|. ..|...|+.+|.+++ |++||. +.+|++|+| +|+|||.|||.+++ +...+... .. ..
T Consensus 134 ~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~--~~~y~lgiN-~FsDlT~eEF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (448)
T PTZ00200 134 NRKHATHAERLNRFLTFRNNYLEVKSHKG--DEPYSKEIN-KFSDLTEEEFRKLFPVIKVPPKSNSTSHNNDFKARHVSN 210 (448)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHhcC--cCCeEEecc-ccccCCHHHHHHHhccCCCcccccccccccccccccccc
Confidence 44453 356667889999974 888885 468999999 99999999998844 33211000 00 00
Q ss_pred CCc-cc--------c---cccCCCCCccccccCCCCCCccccccccc-CccchhHHhhHHHHHHHHHHHhCCccccchhh
Q 023657 87 VPV-KT--------H---DKSLKLPKSFDARSAWPQCSTISRILDQG-HCGSCWAFGAVEALSDRFCIHFGMNLSLSVND 153 (279)
Q Consensus 87 ~~~-~~--------~---~~~~~lP~~~D~R~~~~~~~~v~pv~nQg-~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~ 153 (279)
... .. . .....+|++||||+. |.|+|||||| .||||||||+++++|++++|+++..+.||+||
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~----g~vtpVkdQG~~CGSCWAFat~~aiEs~~~i~~~~~~~LSeQq 286 (448)
T PTZ00200 211 PTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRA----DAVTKVKDQGLNCGSCWAFSSVGSVESLYKIYRDKSVDLSEQE 286 (448)
T ss_pred cccccccccccccccccccccccCCCCccCCCC----CCCCCcccCCCccchHHHHhHHHHHHHHHHHhcCCCeecCHHH
Confidence 000 00 0 001236999999998 7799999999 99999999999999999999999999999999
Q ss_pred hhhhcCCCCCCCCCCCChHHHHHHHHhhcccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeE
Q 023657 154 LLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAY 233 (279)
Q Consensus 154 lidC~~~~~~~gC~GG~~~~a~~y~~~~G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~ 233 (279)
|+||+. .+.||+||++..||+|++++|+++|++|||.+.. ..|.... ...+.+..|
T Consensus 287 LvDC~~--~~~GC~GG~~~~A~~yi~~~Gi~~e~~YPY~~~~-----------------~~C~~~~-----~~~~~i~~y 342 (448)
T PTZ00200 287 LVNCDT--KSQGCSGGYPDTALEYVKNKGLSSSSDVPYLAKD-----------------GKCVVSS-----TKKVYIDSY 342 (448)
T ss_pred HhhccC--ccCCCCCCcHHHHHHHHhhcCccccccCCCCCCC-----------------CCCcCCC-----CCeeEecce
Confidence 999986 4689999999999999999999999999997651 2333222 122446677
Q ss_pred EeCCCHHHHHHHHHhCCCeEEEEEecccCcCCc
Q 023657 234 RINSDPEDIMAEIYKNGPVEVSFTVYEVKQTLT 266 (279)
Q Consensus 234 ~~~~~~~~ik~~l~~~GPv~v~i~v~~~F~~Y~ 266 (279)
.+..+.+.|++++ .+|||+|+|.++++|+.|+
T Consensus 343 ~~~~~~~~l~~~l-~~GPV~v~i~~~~~f~~Yk 374 (448)
T PTZ00200 343 LVAKGKDVLNKSL-VISPTVVYIAVSRELLKYK 374 (448)
T ss_pred EecCHHHHHHHHH-hcCCEEEEeecccccccCC
Confidence 7444545555555 6899999999988999876
No 6
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=1.5e-38 Score=274.87 Aligned_cols=163 Identities=49% Similarity=0.939 Sum_probs=128.4
Q ss_pred CCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhC--CccccchhhhhhhcCCCCCCCCCCCChHHHHH
Q 023657 99 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLLACCGFLCGDGCDGGYPISAWR 176 (279)
Q Consensus 99 P~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~--~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~ 176 (279)
|++||||++|+++..|+||+|||.||||||||++++||++++|+++ +.+.||+|||+||+. ..+.||+||++..|++
T Consensus 1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~-~~~~gC~GG~~~~a~~ 79 (236)
T cd02620 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCS-GCGDGCNGGYPDAAWK 79 (236)
T ss_pred CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcC-CCCCCCCCCCHHHHHH
Confidence 8999999998877667799999999999999999999999999988 789999999999986 3368999999999999
Q ss_pred HHHhhcccccccccCCCCCC-CCC---CCCCCCCCCccccccccccccc-ccccceEEeeeEE-eCCCHHHHHHHHHhCC
Q 023657 177 YFVHHGVVTEECDPYFDSTG-CSH---PGCEPAYPTPKCVRKCVKKNQL-WRNSKHYSISAYR-INSDPEDIMAEIYKNG 250 (279)
Q Consensus 177 y~~~~G~~~e~~yPY~~~~~-c~~---~~c~~~~~~~~c~~~C~~~~~~-~~~~~~~~~~~~~-~~~~~~~ik~~l~~~G 250 (279)
|++++|+++|++|||.+... |.. ..|. ..+.|...|...... +. ...+.+..+. +..++++||++|+++|
T Consensus 80 ~i~~~G~~~e~~yPY~~~~~~~~~~~~~~~~---~~~~~~~~C~~~~~~~~~-~~~~~~~~~~~~~~~~~~ik~~l~~~G 155 (236)
T cd02620 80 YLTTTGVVTGGCQPYTIPPCGHHPEGPPPCC---GTPYCTPKCQDGCEKTYE-EDKHKGKSAYSVPSDETDIMKEIMTNG 155 (236)
T ss_pred HHHhcCCCcCCEecCcCCCCccCCCCCCCCC---CCCCCCCCCCcCCccccc-eeeeeecceeeeCCHHHHHHHHHHHCC
Confidence 99999999999999976532 211 1121 123344456543210 11 1223344444 6567899999999999
Q ss_pred CeEEEEEecccCcCCc
Q 023657 251 PVEVSFTVYEVKQTLT 266 (279)
Q Consensus 251 Pv~v~i~v~~~F~~Y~ 266 (279)
||+++|.++++|+.|+
T Consensus 156 Pv~v~i~~~~~f~~Y~ 171 (236)
T cd02620 156 PVQAAFTVYEDFLYYK 171 (236)
T ss_pred CeEEEEEechhhhhcC
Confidence 9999999988999876
No 7
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=7.1e-38 Score=271.97 Aligned_cols=157 Identities=32% Similarity=0.579 Sum_probs=124.5
Q ss_pred CCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCC------ccccchhhhhhhcCCCCCCCCCCCCh
Q 023657 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGM------NLSLSVNDLLACCGFLCGDGCDGGYP 171 (279)
Q Consensus 98 lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~------~~~lS~Q~lidC~~~~~~~gC~GG~~ 171 (279)
||++||||+.|++++.|+|||||+.||||||||++++||++++|+++. .+.||+|||+||+. .+.||+||++
T Consensus 1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~--~~~GC~GG~~ 78 (243)
T cd02621 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQ--YSQGCDGGFP 78 (243)
T ss_pred CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcC--CCCCCCCCCH
Confidence 799999999987777899999999999999999999999999999876 78999999999986 4689999999
Q ss_pred HHHHHHHHhhcccccccccCCC-C-CCCCCCCCCCCCCCcccccccccccccccccceEEeeeEEeCCCHHHHHHHHHhC
Q 023657 172 ISAWRYFVHHGVVTEECDPYFD-S-TGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKN 249 (279)
Q Consensus 172 ~~a~~y~~~~G~~~e~~yPY~~-~-~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~ 249 (279)
..|++|++++|+++|+||||.+ . ..|.... ..|.. +.......+..+....++++||++|+++
T Consensus 79 ~~a~~~~~~~Gi~~e~~yPY~~~~~~~C~~~~-----------~~~~~----~~~~~~~~i~~~~~~~~~~~ik~~i~~~ 143 (243)
T cd02621 79 FLVGKFAEDFGIVTEDYFPYTADDDRPCKASP-----------SECRR----YYFSDYNYVGGCYGCTNEDEMKWEIYRN 143 (243)
T ss_pred HHHHHHHHhcCcCCCceeCCCCCCCCCCCCCc-----------ccccc----ccccceeEcccccccCCHHHHHHHHHHc
Confidence 9999999999999999999965 2 1122100 01110 0011122233333235789999999999
Q ss_pred CCeEEEEEecccCcCCc--ccccc
Q 023657 250 GPVEVSFTVYEVKQTLT--LYSST 271 (279)
Q Consensus 250 GPv~v~i~v~~~F~~Y~--iY~~g 271 (279)
|||+|+|+++++|++|+ ||...
T Consensus 144 GPv~v~~~~~~~F~~Y~~GIy~~~ 167 (243)
T cd02621 144 GPIVVAFEVYSDFDFYKEGVYHHT 167 (243)
T ss_pred CCEEEEEEecccccccCCeEECcC
Confidence 99999999998999987 66543
No 8
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=100.00 E-value=2.1e-39 Score=278.32 Aligned_cols=237 Identities=29% Similarity=0.524 Sum_probs=188.9
Q ss_pred hhccccChHHHHHHHHcCCCCceEeecCCCCCCCCHHH-HHhhhCCCCCCCCCCCCCCcc-cccccCCCCCccccccCCC
Q 023657 32 KLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQ-FKHLLGVKPTPKGLLLGVPVK-THDKSLKLPKSFDARSAWP 109 (279)
Q Consensus 32 ~~~~~i~~~~~i~~~N~~~~~~~~~g~n~~fsd~t~~e-f~~~~~~~~~~~~~~~~~~~~-~~~~~~~lP~~~D~R~~~~ 109 (279)
+++..+++.++|++||+ .+.+|+++.+++|.+||.++ |+-.+|+.+++..++....+. ..+...+||+.||.|++|+
T Consensus 142 dq~~CLv~Pd~iE~in~-G~YgW~A~NYSaFWGmtL~DGiKyRLGTL~Ps~sv~nMNEi~~~l~p~~~LPE~F~As~KWp 220 (470)
T KOG1544|consen 142 DQEPCLVDPDMIEAINQ-GNYGWQAGNYSAFWGMTLDDGIKYRLGTLRPSSSVMNMNEIYTVLNPGEVLPEAFEASEKWP 220 (470)
T ss_pred CCceeecCHHHHHHHhc-CCccccccchhhhhcccccccceeeecccCchhhhhhHHhHhhccCcccccchhhhhhhcCC
Confidence 56778999999999999 78999999989999999988 666888877655543322221 2234479999999999999
Q ss_pred CCCcccccccccCccchhHHhhHHHHHHHHHHHhC--CccccchhhhhhhcCCCCCCCCCCCChHHHHHHHHhhcccccc
Q 023657 110 QCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEE 187 (279)
Q Consensus 110 ~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~--~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~y~~~~G~~~e~ 187 (279)
+- +.|+.|||+||++|||+++++..+|++|++. ....||+|+|++|+. ....||+||+...||=|+.+.|++...
T Consensus 221 ~l--iH~plDQgnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~-h~q~GC~gG~lDRAWWYlRKrGvVsdh 297 (470)
T KOG1544|consen 221 NL--IHEPLDQGNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDT-HQQQGCRGGRLDRAWWYLRKRGVVSDH 297 (470)
T ss_pred cc--ccCccccCCcccceeeeeehhccceeEEeeccccccccChHHhcchhh-hhhccCccCcccchheeeecccccccc
Confidence 55 9999999999999999999999999999876 568899999999987 557899999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCC-----CcccccccccccccccccceEE-eeeEEeCCCHHHHHHHHHhCCCeEEEEEeccc
Q 023657 188 CDPYFDSTGCSHPGCEPAYP-----TPKCVRKCVKKNQLWRNSKHYS-ISAYRINSDPEDIMAEIYKNGPVEVSFTVYEV 261 (279)
Q Consensus 188 ~yPY~~~~~c~~~~c~~~~~-----~~~c~~~C~~~~~~~~~~~~~~-~~~~~~~~~~~~ik~~l~~~GPv~v~i~v~~~ 261 (279)
||||++...-.+++|--... ...-.+.|.+.... ...++. ...|+++++|++||++|+++|||.+.|.|.+|
T Consensus 298 CYP~~~dQ~~~~~~C~m~sR~~grgkRqat~~CPn~~~~--Sn~iyq~tPPYrVSSnE~eImkElM~NGPVQA~m~VHED 375 (470)
T KOG1544|consen 298 CYPFSGDQAGPAPPCMMHSRAMGRGKRQATAHCPNSYVN--SNDIYQVTPPYRVSSNEKEIMKELMENGPVQALMEVHED 375 (470)
T ss_pred cccccCCCCCCCCCceeeccccCcccccccCcCCCcccc--cCceeeecCCeeccCCHHHHHHHHHhCCChhhhhhhhhh
Confidence 99997654444455542211 10111235443321 124444 45688999999999999999999999999999
Q ss_pred CcCCc--cccccccc
Q 023657 262 KQTLT--LYSSTDFS 274 (279)
Q Consensus 262 F~~Y~--iY~~g~~~ 274 (279)
|+.|+ ||+|....
T Consensus 376 FF~YkgGiY~H~~~~ 390 (470)
T KOG1544|consen 376 FFLYKGGIYSHTPVS 390 (470)
T ss_pred hhhhccceeeccccc
Confidence 99999 99887654
No 9
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=1.4e-36 Score=288.50 Aligned_cols=173 Identities=22% Similarity=0.384 Sum_probs=128.0
Q ss_pred cCCCCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCC----------ccccchhhhhhhcCCCCCC
Q 023657 95 SLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGM----------NLSLSVNDLLACCGFLCGD 164 (279)
Q Consensus 95 ~~~lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~----------~~~lS~Q~lidC~~~~~~~ 164 (279)
..+||++||||+.|+.++.++||+|||.||||||||++++||+|++|+++. ...||+|+||||+. .+.
T Consensus 378 ~~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~--~nq 455 (693)
T PTZ00049 378 IDELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSF--YDQ 455 (693)
T ss_pred cccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCC--CCC
Confidence 458999999999998888899999999999999999999999999998742 13799999999986 468
Q ss_pred CCCCCChHHHHHHHHhhcccccccccCCCCC-CCCCCCCCCCCC---------------Ccccccccccccc--cccccc
Q 023657 165 GCDGGYPISAWRYFVHHGVVTEECDPYFDST-GCSHPGCEPAYP---------------TPKCVRKCVKKNQ--LWRNSK 226 (279)
Q Consensus 165 gC~GG~~~~a~~y~~~~G~~~e~~yPY~~~~-~c~~~~c~~~~~---------------~~~c~~~C~~~~~--~~~~~~ 226 (279)
||+||++..|++|++++|+++|+||||.+.. .|....+..... .+.|...|..... .-....
T Consensus 456 GC~GG~~~~A~kya~~~GI~tEscYPY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (693)
T PTZ00049 456 GCNGGFPYLVSKMAKLQGIPLDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPA 535 (693)
T ss_pred CcCCCcHHHHHHHHHHCCCCcCCccCCcCCCCCCCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999997653 375422110000 0112222211000 000112
Q ss_pred eEEeeeEE-eC--------CCHHHHHHHHHhCCCeEEEEEecccCcCCc--ccc
Q 023657 227 HYSISAYR-IN--------SDPEDIMAEIYKNGPVEVSFTVYEVKQTLT--LYS 269 (279)
Q Consensus 227 ~~~~~~~~-~~--------~~~~~ik~~l~~~GPv~v~i~v~~~F~~Y~--iY~ 269 (279)
.+.+..|. +. .++++||++|+++|||+|+|+++++|+.|+ ||.
T Consensus 536 r~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~~dF~~YksGVY~ 589 (693)
T PTZ00049 536 RWYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEASPDFYDYADGVYY 589 (693)
T ss_pred ceeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEechhhhcCCCcccc
Confidence 23334443 31 478999999999999999999988998876 554
No 10
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=3.2e-36 Score=260.84 Aligned_cols=159 Identities=35% Similarity=0.677 Sum_probs=125.7
Q ss_pred CCCccccccCCCCCCccccccccc---CccchhHHhhHHHHHHHHHHHhC---CccccchhhhhhhcCCCCCCCCCCCCh
Q 023657 98 LPKSFDARSAWPQCSTISRILDQG---HCGSCWAFGAVEALSDRFCIHFG---MNLSLSVNDLLACCGFLCGDGCDGGYP 171 (279)
Q Consensus 98 lP~~~D~R~~~~~~~~v~pv~nQg---~CGsCwAfa~~~~le~~~~i~~~---~~~~lS~Q~lidC~~~~~~~gC~GG~~ 171 (279)
||++||||+.+ +.+.++|||||| .||||||||++++||++++|+++ ..+.||+|||+||+. +.||+||++
T Consensus 1 lP~~~Dwr~~~-~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~---~~gC~GG~~ 76 (239)
T cd02698 1 LPKSWDWRNVN-GVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG---GGSCHGGDP 76 (239)
T ss_pred CCCCcccccCC-CCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC---CCCccCcCH
Confidence 69999999973 223799999998 89999999999999999999876 467999999999986 589999999
Q ss_pred HHHHHHHHhhcccccccccCCCCC-CCCC-CCCCCCCCCcccc--cccccccccccccceEEeeeEEeCCCHHHHHHHHH
Q 023657 172 ISAWRYFVHHGVVTEECDPYFDST-GCSH-PGCEPAYPTPKCV--RKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIY 247 (279)
Q Consensus 172 ~~a~~y~~~~G~~~e~~yPY~~~~-~c~~-~~c~~~~~~~~c~--~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~ 247 (279)
..|++|++++|+++|++|||.+.. .|.. ..| .+|. ..|...+ ....+.+..|....++++||++|+
T Consensus 77 ~~a~~~~~~~Gl~~e~~yPY~~~~~~C~~~~~~------~~c~~~~~c~~~~----~~~~~~i~~~~~~~~~~~i~~~l~ 146 (239)
T cd02698 77 GGVYEYAHKHGIPDETCNPYQAKDGECNPFNRC------GTCNPFGECFAIK----NYTLYFVSDYGSVSGRDKMMAEIY 146 (239)
T ss_pred HHHHHHHHHcCcCCCCeeCCcCCCCCCcCCCCC------CCcccCccccccc----ccceEEeeeceecCCHHHHHHHHH
Confidence 999999999999999999997643 2442 222 2222 2343221 134466777762246789999999
Q ss_pred hCCCeEEEEEecccCcCCc--cccc
Q 023657 248 KNGPVEVSFTVYEVKQTLT--LYSS 270 (279)
Q Consensus 248 ~~GPv~v~i~v~~~F~~Y~--iY~~ 270 (279)
++|||+|+|.++++|+.|+ ||++
T Consensus 147 ~~GPV~v~i~~~~~f~~Y~~GIy~~ 171 (239)
T cd02698 147 ARGPISCGIMATEALENYTGGVYKE 171 (239)
T ss_pred HcCCEEEEEEecccccccCCeEEcc
Confidence 9999999999998999877 5543
No 11
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=9e-35 Score=246.90 Aligned_cols=146 Identities=33% Similarity=0.609 Sum_probs=123.8
Q ss_pred CCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHHHHHHH
Q 023657 99 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYF 178 (279)
Q Consensus 99 P~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~y~ 178 (279)
|++||||+. +.++||+|||.||+|||||++++||++++++++..+.||+|+|++|.. ..+.||.||++..|++++
T Consensus 1 P~~~d~r~~----~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~-~~~~gC~GG~~~~a~~~~ 75 (210)
T cd02248 1 PESVDWREK----GAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCST-SGNNGCNGGNPDNAFEYV 75 (210)
T ss_pred CCcccCCcC----CCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCC-CCCCCCCCCCHHHhHHHH
Confidence 889999997 569999999999999999999999999999999899999999999986 236899999999999999
Q ss_pred HhhcccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eCC-CHHHHHHHHHhCCCeEEEE
Q 023657 179 VHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INS-DPEDIMAEIYKNGPVEVSF 256 (279)
Q Consensus 179 ~~~G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~~-~~~~ik~~l~~~GPv~v~i 256 (279)
.++|+++|++|||.+. ...|.... ....+++..|. +.. ++++||++|+++|||+++|
T Consensus 76 ~~~Gi~~e~~yPY~~~-----------------~~~C~~~~----~~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~ 134 (210)
T cd02248 76 KNGGLASESDYPYTGK-----------------DGTCKYNS----SKVGAKITGYSNVPPGDEEALKAALANYGPVSVAI 134 (210)
T ss_pred HHCCcCccccCCccCC-----------------CCCccCCC----CcccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEE
Confidence 9999999999999653 12333222 13456777777 543 5789999999999999999
Q ss_pred EecccCcCCc--cccc
Q 023657 257 TVYEVKQTLT--LYSS 270 (279)
Q Consensus 257 ~v~~~F~~Y~--iY~~ 270 (279)
.++++|+.|+ ||..
T Consensus 135 ~~~~~f~~y~~Giy~~ 150 (210)
T cd02248 135 DASSSFQFYKGGIYSG 150 (210)
T ss_pred ecCcccccCCCCceeC
Confidence 9999999987 5543
No 12
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=8.3e-35 Score=273.60 Aligned_cols=160 Identities=21% Similarity=0.364 Sum_probs=124.2
Q ss_pred cCCCCCccccccCCCCCCcccccccccC---ccchhHHhhHHHHHHHHHHHhC------CccccchhhhhhhcCCCCCCC
Q 023657 95 SLKLPKSFDARSAWPQCSTISRILDQGH---CGSCWAFGAVEALSDRFCIHFG------MNLSLSVNDLLACCGFLCGDG 165 (279)
Q Consensus 95 ~~~lP~~~D~R~~~~~~~~v~pv~nQg~---CGsCwAfa~~~~le~~~~i~~~------~~~~lS~Q~lidC~~~~~~~g 165 (279)
..+||++||||+++ +.+.++|||||+. ||||||||++++||+|++|+++ ..+.||+|||+||+. .+.|
T Consensus 202 ~~~LP~sfDWR~~g-g~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~--~n~G 278 (548)
T PTZ00364 202 GDPPPAAWSWGDVG-GASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQ--YGQG 278 (548)
T ss_pred ccCCCCccccCcCC-CCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccC--CCCC
Confidence 46799999999972 3346999999999 9999999999999999999984 468999999999986 4689
Q ss_pred CCCCChHHHHHHHHhhcccccccc--cCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eCCCHHHH
Q 023657 166 CDGGYPISAWRYFVHHGVVTEECD--PYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDI 242 (279)
Q Consensus 166 C~GG~~~~a~~y~~~~G~~~e~~y--PY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~i 242 (279)
|+||++..|++|++++|+++|++| ||.+.++ .. +.|...+. ...+.......+.+|. +..++++|
T Consensus 279 CdGG~p~~A~~yi~~~GI~tE~dY~~PY~~~dg-~~---------~~Ck~~~~--~~~y~~~~~~~I~gyy~~~~~e~~I 346 (548)
T PTZ00364 279 CAGGFPEEVGKFAETFGILTTDSYYIPYDSGDG-VE---------RACKTRRP--SRRYYFTNYGPLGGYYGAVTDPDEI 346 (548)
T ss_pred CCCCcHHHHHHHHHhCCcccccccCCCCCCCCC-CC---------CCCCCCcc--cceeeeeeeEEecceeecCCcHHHH
Confidence 999999999999999999999999 9976421 11 11221111 0001111223444554 44578899
Q ss_pred HHHHHhCCCeEEEEEecccCcCCc--ccc
Q 023657 243 MAEIYKNGPVEVSFTVYEVKQTLT--LYS 269 (279)
Q Consensus 243 k~~l~~~GPv~v~i~v~~~F~~Y~--iY~ 269 (279)
|++|+++|||+|+|+++.+|+.|+ +|+
T Consensus 347 ~~eI~~~GPVsVaIda~~df~~YksGiy~ 375 (548)
T PTZ00364 347 IWEIYRHGPVPASVYANSDWYNCDENSTE 375 (548)
T ss_pred HHHHHHcCCeEEEEEechHHHhcCCCCcc
Confidence 999999999999999999999887 454
No 13
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=99.98 E-value=3.6e-32 Score=231.70 Aligned_cols=151 Identities=41% Similarity=0.695 Sum_probs=118.7
Q ss_pred CCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHh-CCccccchhhhhhhcCCCCCCCCCCCChHHHHH
Q 023657 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHF-GMNLSLSVNDLLACCGFLCGDGCDGGYPISAWR 176 (279)
Q Consensus 98 lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~-~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~ 176 (279)
||++||||+.+ +.++||+||+.||+|||||+++++|++++++. ...+.||+|+|++|.. ..+.+|+||++..|++
T Consensus 1 lP~~~D~r~~~---~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~-~~~~~c~gg~~~~a~~ 76 (219)
T PF00112_consen 1 LPKSFDWRDKG---GRITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSN-KYNKGCDGGSPFDALK 76 (219)
T ss_dssp STSSEEGGGTT---TCSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHST-GTSSTTBBBEHHHHHH
T ss_pred CCCCEecccCC---CCcCccccCCcccccccchhccceecccccccccccccccccccccccc-ccccccccCcccccce
Confidence 79999999952 35999999999999999999999999999999 7899999999999986 3467999999999999
Q ss_pred HHHh-hcccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eC-CCHHHHHHHHHhCCCeE
Q 023657 177 YFVH-HGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYKNGPVE 253 (279)
Q Consensus 177 y~~~-~G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~-~~~~~ik~~l~~~GPv~ 253 (279)
++++ +|+++|++|||.+.. . ..|..... ....+.+..|. +. .+.++||++|+++|||+
T Consensus 77 ~~~~~~Gi~~e~~~pY~~~~------------~----~~c~~~~~---~~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~ 137 (219)
T PF00112_consen 77 YIKNNNGIVTEEDYPYNGNE------------N----PTCKSKKS---NSYYVKIKGYGKVKDNDIEDIKKALMKYGPVV 137 (219)
T ss_dssp HHHHHTSBEBTTTS--SSSS------------S----CSSCHSGG---GEEEBEESEEEEEESTCHHHHHHHHHHHSSEE
T ss_pred eecccCcccccccccccccc------------c----cccccccc---ccccccccccccccccchhHHHHHHhhCceee
Confidence 9999 899999999996541 0 23443321 01135667777 54 36899999999999999
Q ss_pred EEEEecc-cCcCCc--ccccc
Q 023657 254 VSFTVYE-VKQTLT--LYSST 271 (279)
Q Consensus 254 v~i~v~~-~F~~Y~--iY~~g 271 (279)
++|.+.+ +|..|+ ||...
T Consensus 138 ~~~~~~~~~f~~~~~gi~~~~ 158 (219)
T PF00112_consen 138 ASIDVSSEDFQNYKSGIYDPP 158 (219)
T ss_dssp EEEEEESHHHHTEESSEECST
T ss_pred eeeeccccccccccceeeecc
Confidence 9999998 698876 55554
No 14
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=99.96 E-value=4e-29 Score=213.33 Aligned_cols=144 Identities=33% Similarity=0.509 Sum_probs=116.4
Q ss_pred ccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhC--CccccchhhhhhhcCCCC---CCCCCCCChHHHH
Q 023657 101 SFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLLACCGFLC---GDGCDGGYPISAW 175 (279)
Q Consensus 101 ~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~--~~~~lS~Q~lidC~~~~~---~~gC~GG~~~~a~ 175 (279)
.+|||+. + ++||+|||.||+|||||+++++|++++++.+ ..+.||+|+|++|..... ..||.||.+..++
T Consensus 1 ~~d~r~~----~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~ 75 (223)
T cd02619 1 SVDLRPL----R-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSAL 75 (223)
T ss_pred CCcchhc----C-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHH
Confidence 4899987 5 8999999999999999999999999999988 889999999999987322 2699999999999
Q ss_pred H-HHHhhcccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eC-CCHHHHHHHHHhCCCe
Q 023657 176 R-YFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYKNGPV 252 (279)
Q Consensus 176 ~-y~~~~G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~-~~~~~ik~~l~~~GPv 252 (279)
. +++++|+++|++|||..... .|...|... .....+++..|. +. .++++||++|+++|||
T Consensus 76 ~~~~~~~Gi~~e~~~Py~~~~~-------------~~~~~~~~~----~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv 138 (223)
T cd02619 76 LKLVALKGIPPEEDYPYGAESD-------------GEEPKSEAA----LNAAKVKLKDYRRVLKNNIEDIKEALAKGGPV 138 (223)
T ss_pred HHHHHHcCCCccccCCCCCCCC-------------CCCCCCccc----hhhcceeecceeEeCchhHHHHHHHHHHCCCE
Confidence 8 88889999999999965411 111111011 113446677777 44 3578999999999999
Q ss_pred EEEEEecccCcCCc
Q 023657 253 EVSFTVYEVKQTLT 266 (279)
Q Consensus 253 ~v~i~v~~~F~~Y~ 266 (279)
+++|.+..+|..|+
T Consensus 139 ~~~~~~~~~~~~~~ 152 (223)
T cd02619 139 VAGFDVYSGFDRLK 152 (223)
T ss_pred EEEEEcccchhccc
Confidence 99999999999877
No 15
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=99.94 E-value=1.8e-27 Score=196.45 Aligned_cols=90 Identities=46% Similarity=0.918 Sum_probs=84.0
Q ss_pred CCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHHHHHH
Q 023657 98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRY 177 (279)
Q Consensus 98 lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~y 177 (279)
||++||||+. +.++||+||+.||+|||||+++++|++++++++..+.||+|+|++|... .+.||+||++..|++|
T Consensus 1 lP~~~D~R~~----~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~-~~~gC~GG~~~~a~~~ 75 (174)
T smart00645 1 LPESFDWRKK----GAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTG-GNNGCNGGLPDNAFEY 75 (174)
T ss_pred CCCcCccccc----CCCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCC-CCCCCCCcCHHHHHHH
Confidence 6999999998 4599999999999999999999999999999998999999999999872 3569999999999999
Q ss_pred HHhh-cccccccccCC
Q 023657 178 FVHH-GVVTEECDPYF 192 (279)
Q Consensus 178 ~~~~-G~~~e~~yPY~ 192 (279)
++++ |+++|+||||.
T Consensus 76 ~~~~~Gi~~e~~~PY~ 91 (174)
T smart00645 76 IKKNGGLETESCYPYT 91 (174)
T ss_pred HHHcCCcccccccCcc
Confidence 9998 99999999994
No 16
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=99.94 E-value=3.7e-26 Score=223.50 Aligned_cols=153 Identities=19% Similarity=0.250 Sum_probs=104.4
Q ss_pred CCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCC-hHHHHHHHHhhc-ccc
Q 023657 108 WPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGY-PISAWRYFVHHG-VVT 185 (279)
Q Consensus 108 ~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~-~~~a~~y~~~~G-~~~ 185 (279)
++.|....||||||.||+|||||+++++|++++|+++..+.||+|+|+||+....+.||.||+ +..++.|++++| +++
T Consensus 538 ~~sC~s~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLpt 617 (1004)
T PTZ00462 538 ENNCISKIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPA 617 (1004)
T ss_pred CCCCCCCCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcc
Confidence 467766789999999999999999999999999999999999999999998633468999997 545669998875 889
Q ss_pred cccccCCCCCCCCCCCCCCCCCCccccccccccccc--c--cccceEEeeeEE-eCC-----C----HHHHHHHHHhCCC
Q 023657 186 EECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQL--W--RNSKHYSISAYR-INS-----D----PEDIMAEIYKNGP 251 (279)
Q Consensus 186 e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~--~--~~~~~~~~~~~~-~~~-----~----~~~ik~~l~~~GP 251 (279)
|++|||.... ....|....... ..|...... + .......+.+|. +.. + +++||++|+.+||
T Consensus 618 ESdYPYt~k~--~~g~Cp~~~~~w---~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGP 692 (1004)
T PTZ00462 618 DSNYLYNYTK--VGEDCPDEEDHW---MNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGS 692 (1004)
T ss_pred cccCCCccCC--CCCCCCCCcccc---cccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCC
Confidence 9999996420 001121100000 000000000 0 001122233444 321 1 4689999999999
Q ss_pred eEEEEEecccCcCCc
Q 023657 252 VEVSFTVYEVKQTLT 266 (279)
Q Consensus 252 v~v~i~v~~~F~~Y~ 266 (279)
|+|+|.+. +|+.|.
T Consensus 693 VaV~IdAs-df~~Y~ 706 (1004)
T PTZ00462 693 VIAYIKAE-NVLGYE 706 (1004)
T ss_pred EEEEEEee-hHHhhh
Confidence 99999985 788773
No 17
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=9.6e-12 Score=110.36 Aligned_cols=94 Identities=33% Similarity=0.531 Sum_probs=69.0
Q ss_pred cCCCCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCC-----CCC
Q 023657 95 SLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGC-----DGG 169 (279)
Q Consensus 95 ~~~lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC-----~GG 169 (279)
...+|+.||||+. |.|+||||||.||+||||++++++|+.+.-.. ...+|+-.+..-.......+| +||
T Consensus 96 ~~s~~~~fd~r~~----g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~--~w~~s~~nm~~ll~~~ye~~fd~~~~d~g 169 (372)
T COG4870 96 SASLPSYFDRRDE----GKVSPVKDQGSGGSCWAFATTRSLESYLNPES--AWDFSENNMKNLLGVPYEKGFDYTSNDGG 169 (372)
T ss_pred cccchhheeeecc----CCcccccccCcccceEeeeehhhhhheecccc--cccccccchhhhcCCCccccCCCccccCC
Confidence 3468999999998 78999999999999999999999999876655 334444333322110111223 378
Q ss_pred ChHHHHHHHHhh-cccccccccCCCC
Q 023657 170 YPISAWRYFVHH-GVVTEECDPYFDS 194 (279)
Q Consensus 170 ~~~~a~~y~~~~-G~~~e~~yPY~~~ 194 (279)
....+..|+.+. |.+.|.+.||...
T Consensus 170 ~~~m~~a~l~e~sgpv~et~d~y~~~ 195 (372)
T COG4870 170 NADMSAAYLTEWSGPVYETDDPYSEN 195 (372)
T ss_pred ccccccccccccCCcchhhcCccccc
Confidence 888888888876 8999999999553
No 18
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=98.41 E-value=2.1e-07 Score=62.38 Aligned_cols=49 Identities=24% Similarity=0.226 Sum_probs=38.7
Q ss_pred hccccc-ccchhhhccccChHH--HHHHHHcCCCCceEeecCCCCCCCCHHHH
Q 023657 21 QTFAEG-VVSKLKLDSHILQDS--IIKEVNENPKAGWKAARNPQFSNYTVGQF 70 (279)
Q Consensus 21 ~~~~~~-~~~~~~~~~~i~~~~--~i~~~N~~~~~~~~~g~n~~fsd~t~~ef 70 (279)
..++.| +..|...|+.+|.++ .|+++|+....+|++|+| +|+|||.+||
T Consensus 7 ~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N-~fsD~t~eEf 58 (58)
T PF08246_consen 7 KYGKSYKSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLN-QFSDMTPEEF 58 (58)
T ss_dssp HCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SS-TTTTSSHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCc-cccCcChhhC
Confidence 344555 667788899999996 599999667899999999 9999999997
No 19
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=98.04 E-value=5.5e-06 Score=51.08 Aligned_cols=38 Identities=42% Similarity=0.740 Sum_probs=26.5
Q ss_pred hHHHHHHHHcCCCCceEeecCCCCCCCCHHHHHhhhCCCCC
Q 023657 39 QDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPT 79 (279)
Q Consensus 39 ~~~~i~~~N~~~~~~~~~g~n~~fsd~t~~ef~~~~~~~~~ 79 (279)
.+++|+.||++ +.+|+||.| |.+.+.+++++++|..+.
T Consensus 2 sde~I~~IN~~-~~tWkAG~N--F~~~~~~~ik~LlGv~~~ 39 (41)
T PF08127_consen 2 SDEFIDYINSK-NTTWKAGRN--FENTSIEYIKRLLGVLPD 39 (41)
T ss_dssp -HHHHHHHHHC-T-SEEE------SSB-HHHHHHCS-B-TT
T ss_pred CHHHHHHHHcC-CCcccCCCC--CCCCCHHHHHHHcCCCCC
Confidence 56799999996 999999999 799999999999998754
No 20
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=98.00 E-value=6.3e-06 Score=76.98 Aligned_cols=79 Identities=20% Similarity=0.291 Sum_probs=64.1
Q ss_pred ccccccccCccchhHHhhHHHHHHHHHHHhC-Cccccchhhhhh----------------hcCC--C--------CCCCC
Q 023657 114 ISRILDQGHCGSCWAFGAVEALSDRFCIHFG-MNLSLSVNDLLA----------------CCGF--L--------CGDGC 166 (279)
Q Consensus 114 v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~-~~~~lS~Q~lid----------------C~~~--~--------~~~gC 166 (279)
..||.||+.-|-||.||+..+++..+..+.+ ..+.||+.++.- +... . .....
T Consensus 54 ~~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~ 133 (437)
T cd00585 54 TEPVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQN 133 (437)
T ss_pred CCCcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcC
Confidence 3489999999999999999999998887544 789999877665 2210 0 13456
Q ss_pred CCCChHHHHHHHHhhcccccccccCC
Q 023657 167 DGGYPISAWRYFVHHGVVTEECDPYF 192 (279)
Q Consensus 167 ~GG~~~~a~~y~~~~G~~~e~~yPY~ 192 (279)
+||.-..+...++++|+++.++||-+
T Consensus 134 DGGqw~m~~~li~KYGvVPk~~~pet 159 (437)
T cd00585 134 DGGQWDMLVNLIEKYGLVPKSVMPES 159 (437)
T ss_pred CCCchHHHHHHHHHcCCCcccccCCC
Confidence 89999999999999999999999964
No 21
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=97.86 E-value=3.6e-05 Score=71.96 Aligned_cols=79 Identities=23% Similarity=0.304 Sum_probs=52.1
Q ss_pred ccccccccCccchhHHhhHHHHHHHHHHHhC-Cccccchhhhh----------------hhcCCC----------CCCCC
Q 023657 114 ISRILDQGHCGSCWAFGAVEALSDRFCIHFG-MNLSLSVNDLL----------------ACCGFL----------CGDGC 166 (279)
Q Consensus 114 v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~-~~~~lS~Q~li----------------dC~~~~----------~~~gC 166 (279)
..||.||+.-|-||.||+..+++..+..+.+ ..+.||+-++. ++.... .....
T Consensus 55 ~~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~ 134 (438)
T PF03051_consen 55 TGPVTNQKSSGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVS 134 (438)
T ss_dssp S-S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-
T ss_pred cCCCCCCCCCCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCC
Confidence 3589999999999999999999999988876 88999988865 332200 01346
Q ss_pred CCCChHHHHHHHHhhcccccccccCC
Q 023657 167 DGGYPISAWRYFVHHGVVTEECDPYF 192 (279)
Q Consensus 167 ~GG~~~~a~~y~~~~G~~~e~~yPY~ 192 (279)
+||.-..+.+-++++|+++.+.||=+
T Consensus 135 DGGqw~~~~nli~KYGvVPk~~mpet 160 (438)
T PF03051_consen 135 DGGQWDMVVNLIKKYGVVPKSVMPET 160 (438)
T ss_dssp S-B-HHHHHHHHHHH---BGGGSTTG
T ss_pred CCCchHHHHHHHHHcCcCcHhhCCCC
Confidence 89999999999999999999999974
No 22
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=97.72 E-value=1.2e-05 Score=53.34 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=35.5
Q ss_pred cccccc-chhhhccccChHH--HHHHHHcCCCCceEeecCCCCCCCCHHH
Q 023657 23 FAEGVV-SKLKLDSHILQDS--IIKEVNENPKAGWKAARNPQFSNYTVGQ 69 (279)
Q Consensus 23 ~~~~~~-~~~~~~~~i~~~~--~i~~~N~~~~~~~~~g~n~~fsd~t~~e 69 (279)
.+.|.. .|...|..+|.++ .|+.+|+.+..+|++|+| +|+|||.+|
T Consensus 9 ~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N-~fsDlt~eE 57 (57)
T smart00848 9 GKSYSSEEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLN-QFADLTNEE 57 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCc-ccccCCCCC
Confidence 344433 4556677888886 599999876689999999 999999875
No 23
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=95.15 E-value=0.033 Score=49.77 Aligned_cols=78 Identities=22% Similarity=0.344 Sum_probs=55.0
Q ss_pred cccccccCccchhHHhhHHHHHHHHHHHhC-Cccccchhhhh----------------hhcCC----------CCCCCCC
Q 023657 115 SRILDQGHCGSCWAFGAVEALSDRFCIHFG-MNLSLSVNDLL----------------ACCGF----------LCGDGCD 167 (279)
Q Consensus 115 ~pv~nQg~CGsCwAfa~~~~le~~~~i~~~-~~~~lS~Q~li----------------dC~~~----------~~~~gC~ 167 (279)
.||-||..-|-||-||+...+-..+.-+-+ ..+.||..++. .-... -.+.--+
T Consensus 58 d~vtNQk~SGRCWmFAAlNtfRhk~~~el~le~fElSQaytfFwDKlEKaN~FleqIi~tadq~ldsRlv~~LL~~PqqD 137 (444)
T COG3579 58 DKVTNQKQSGRCWMFAALNTFRHKLISELKLEDFELSQAYTFFWDKLEKANWFLEQIIETADQELDSRLVSFLLATPQQD 137 (444)
T ss_pred CccccccccceehHHHHHHHHHHHHHHhcCcceeehhhHHHHHHHHHHHhhHHHHHHHhhcccchHHHHHHHHHcCcccc
Confidence 378999999999999999987655544444 56777754433 22110 0112347
Q ss_pred CCChHHHHHHHHhhcccccccccCC
Q 023657 168 GGYPISAWRYFVHHGVVTEECDPYF 192 (279)
Q Consensus 168 GG~~~~a~~y~~~~G~~~e~~yPY~ 192 (279)
||--......+.++|+++-++||=.
T Consensus 138 GGQwdM~v~l~eKYGvVpK~~ypes 162 (444)
T COG3579 138 GGQWDMFVSLFEKYGVVPKSVYPES 162 (444)
T ss_pred CchHHHHHHHHHHhCCCchhhcccc
Confidence 8877778888899999999999984
No 24
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=91.60 E-value=0.16 Score=45.37 Aligned_cols=78 Identities=22% Similarity=0.301 Sum_probs=57.8
Q ss_pred ccccccccCccchhHHhhHHHHHHHHHHHhC-Cccccchhhhhh--------------------hcCC--------CCCC
Q 023657 114 ISRILDQGHCGSCWAFGAVEALSDRFCIHFG-MNLSLSVNDLLA--------------------CCGF--------LCGD 164 (279)
Q Consensus 114 v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~-~~~~lS~Q~lid--------------------C~~~--------~~~~ 164 (279)
-+||-||..-|-||.|+....+---+..+-+ +.+.||..+|.- |-+- -.+.
T Consensus 62 ~~pvtnqkssGrcWift~ln~lrl~~~~kLnl~eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll~nP 141 (457)
T KOG4128|consen 62 RQPVTNQKSSGRCWIFTGLNLLRLEMDRKLNLPEFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLLKNP 141 (457)
T ss_pred CcccccCcCCCceEEEechhHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHhCC
Confidence 4699999999999999999988655554444 667888777652 2110 0123
Q ss_pred CCCCCChHHHHHHHHhhcccccccccC
Q 023657 165 GCDGGYPISAWRYFVHHGVVTEECDPY 191 (279)
Q Consensus 165 gC~GG~~~~a~~y~~~~G~~~e~~yPY 191 (279)
.=+||.-..-.+.++++|+.+..|||-
T Consensus 142 ~~DGGqw~MfvNlVkKYGviPKkcy~~ 168 (457)
T KOG4128|consen 142 VPDGGQWQMFVNLVKKYGVIPKKCYLH 168 (457)
T ss_pred CCCCchHHHHHHHHHHhCCCcHHhccc
Confidence 346888888888999999999999986
No 25
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=82.54 E-value=1.4 Score=26.12 Aligned_cols=23 Identities=30% Similarity=0.192 Sum_probs=17.0
Q ss_pred cchhHHHHHHHHHHHHhhhcccc
Q 023657 3 SSHLFLTTCLLILGVISSQTFAE 25 (279)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~~~~~~ 25 (279)
...+||++|++|++.++....++
T Consensus 15 ~~llflv~imliif~f~le~qdl 37 (43)
T PF11395_consen 15 SFLLFLVIIMLIIFWFSLEIQDL 37 (43)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Confidence 35678888888888887766544
No 26
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=69.20 E-value=4.7 Score=29.64 Aligned_cols=9 Identities=44% Similarity=0.552 Sum_probs=5.5
Q ss_pred CccchhHHH
Q 023657 1 MASSHLFLT 9 (279)
Q Consensus 1 ~~~~~~~l~ 9 (279)
||++.+||+
T Consensus 1 MaSK~~llL 9 (95)
T PF07172_consen 1 MASKAFLLL 9 (95)
T ss_pred CchhHHHHH
Confidence 887764443
No 27
>PF08475 Baculo_VP91_N: Viral capsid protein 91 N-terminal; InterPro: IPR013682 This domain is found in Baculoviridae including the nucleopolyhedrovirus at the N terminus of the viral capsid protein 91 (VP91) [].
Probab=66.33 E-value=4.6 Score=33.33 Aligned_cols=20 Identities=15% Similarity=0.366 Sum_probs=13.1
Q ss_pred chhhhccccChHHHHHHHHcC
Q 023657 29 SKLKLDSHILQDSIIKEVNEN 49 (279)
Q Consensus 29 ~~~~~~~~i~~~~~i~~~N~~ 49 (279)
.++++|..+..+ +++.-|+.
T Consensus 26 ~~F~~rL~Vl~E-Ylkrtna~ 45 (183)
T PF08475_consen 26 NEFDNRLQVLTE-YLKRTNAD 45 (183)
T ss_pred HHHHHHHHHHHH-HHHhcCCC
Confidence 445666666555 78887764
No 28
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=63.25 E-value=4.4 Score=20.06 Aligned_cols=13 Identities=31% Similarity=0.350 Sum_probs=5.8
Q ss_pred ccchhHHHHHHHH
Q 023657 2 ASSHLFLTTCLLI 14 (279)
Q Consensus 2 ~~~~~~l~~~~~~ 14 (279)
-+.+++|++.++|
T Consensus 2 Mk~vIIlvvLLli 14 (19)
T PF13956_consen 2 MKLVIILVVLLLI 14 (19)
T ss_pred ceehHHHHHHHhc
Confidence 3444444444443
No 29
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=58.20 E-value=7.4 Score=30.19 Aligned_cols=15 Identities=27% Similarity=0.219 Sum_probs=6.4
Q ss_pred hhHHHHHHHHHHHHh
Q 023657 5 HLFLTTCLLILGVIS 19 (279)
Q Consensus 5 ~~~l~~~~~~~~~~~ 19 (279)
+||++||++|+++++
T Consensus 3 ~l~~iii~~i~l~~~ 17 (130)
T PF12273_consen 3 VLFAIIIVAILLFLF 17 (130)
T ss_pred eeHHHHHHHHHHHHH
Confidence 344444444444443
No 30
>PLN03207 stomagen; Provisional
Probab=49.15 E-value=16 Score=26.87 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHhhhcccccccchhhhccccChHHHHHHHHc
Q 023657 5 HLFLTTCLLILGVISSQTFAEGVVSKLKLDSHILQDSIIKEVNE 48 (279)
Q Consensus 5 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~N~ 48 (279)
.||+++++||+.....|.....++...+.+..+-.++.++..|.
T Consensus 14 ~lffLl~~llla~~v~qgsr~~~~~~~~~~~s~~~q~~~~~l~g 57 (113)
T PLN03207 14 TLFFLLFFLLLGAYVIQGSRNQSILPYDQSISYPHQETVKLLNG 57 (113)
T ss_pred HHHHHHHHHHHHHHHHhccccccccCcccccccCchhccccccc
Confidence 45666666667777777776666666666666666655555554
No 31
>PRK00523 hypothetical protein; Provisional
Probab=40.62 E-value=36 Score=23.57 Aligned_cols=17 Identities=6% Similarity=0.186 Sum_probs=8.7
Q ss_pred hhccccChHHHHHHHHc
Q 023657 32 KLDSHILQDSIIKEVNE 48 (279)
Q Consensus 32 ~~~~~i~~~~~i~~~N~ 48 (279)
-+..+.++++.|+..-.
T Consensus 34 l~~NPpine~mir~M~~ 50 (72)
T PRK00523 34 IRENPPITENMIRAMYM 50 (72)
T ss_pred HHHCcCCCHHHHHHHHH
Confidence 33445555555555544
No 32
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=40.12 E-value=17 Score=19.73 Aligned_cols=14 Identities=29% Similarity=0.392 Sum_probs=9.2
Q ss_pred ccchhHHHHHHHHH
Q 023657 2 ASSHLFLTTCLLIL 15 (279)
Q Consensus 2 ~~~~~~l~~~~~~~ 15 (279)
-+.|+|+++.++.+
T Consensus 7 mKkil~~l~a~~~L 20 (25)
T PF08139_consen 7 MKKILFPLLALFML 20 (25)
T ss_pred HHHHHHHHHHHHHH
Confidence 46677777776654
No 33
>PF01754 zf-A20: A20-like zinc finger; InterPro: IPR002653 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in A20. A20 is an inhibitor of cell death that inhibits NF-kappaB activation via the tumour necrosis factor receptor associated factor pathway []. The zinc finger domains appear to mediate self-association in A20. These fingers also mediate IL-1-induced NF-kappa B activation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding; PDB: 2FIF_F 2FID_B 2C7N_C 2C7M_A 2L00_A 2KZY_A 2EQG_A 2EQE_A 3OJ3_J 3OJ4_C ....
Probab=37.96 E-value=21 Score=19.37 Aligned_cols=19 Identities=21% Similarity=0.641 Sum_probs=14.7
Q ss_pred CCCCcccccccccCccchh
Q 023657 109 PQCSTISRILDQGHCGSCW 127 (279)
Q Consensus 109 ~~~~~v~pv~nQg~CGsCw 127 (279)
++||+...+..++.|.-||
T Consensus 6 ~gCgf~Gs~~~~~~Cs~C~ 24 (25)
T PF01754_consen 6 NGCGFYGSPATNGLCSKCY 24 (25)
T ss_dssp TTSSSB-BGGGTTS-HHHH
T ss_pred CCCCCcccccccCcchhhc
Confidence 5788888899999998887
No 34
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=37.83 E-value=27 Score=26.96 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=8.5
Q ss_pred chhHHHHHHHHHHHHhhh
Q 023657 4 SHLFLTTCLLILGVISSQ 21 (279)
Q Consensus 4 ~~~~l~~~~~~~~~~~~~ 21 (279)
.++|+++|||+++.+..-
T Consensus 5 ~~iii~~i~l~~~~~~~~ 22 (130)
T PF12273_consen 5 FAIIIVAILLFLFLFYCH 22 (130)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 35
>PRK01844 hypothetical protein; Provisional
Probab=34.66 E-value=51 Score=22.83 Aligned_cols=17 Identities=6% Similarity=0.087 Sum_probs=8.4
Q ss_pred hhccccChHHHHHHHHc
Q 023657 32 KLDSHILQDSIIKEVNE 48 (279)
Q Consensus 32 ~~~~~i~~~~~i~~~N~ 48 (279)
-+..+.++++.|+..-.
T Consensus 33 lk~NPpine~mir~Mm~ 49 (72)
T PRK01844 33 LQKNPPINEQMLKMMMM 49 (72)
T ss_pred HHHCCCCCHHHHHHHHH
Confidence 33444555555555443
No 36
>PF05887 Trypan_PARP: Procyclic acidic repetitive protein (PARP); InterPro: IPR008882 This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of T. brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated [].; GO: 0016020 membrane; PDB: 2X34_B 2X32_B.
Probab=33.16 E-value=14 Score=28.74 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=0.0
Q ss_pred CccchhHHHHHHHHHHHHhhhc
Q 023657 1 MASSHLFLTTCLLILGVISSQT 22 (279)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~ 22 (279)
|+.++|+|+.+||++..++...
T Consensus 1 m~pr~l~~LavLL~~A~Lfag~ 22 (143)
T PF05887_consen 1 MTPRHLCLLAVLLFGAALFAGV 22 (143)
T ss_dssp ----------------------
T ss_pred Cccccccccccccccccccccc
Confidence 7888888888888877766654
No 37
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=29.39 E-value=60 Score=21.16 Aligned_cols=13 Identities=8% Similarity=0.051 Sum_probs=5.4
Q ss_pred hHHHHHHHHHHHH
Q 023657 6 LFLTTCLLILGVI 18 (279)
Q Consensus 6 ~~l~~~~~~~~~~ 18 (279)
+||++|+.+++..
T Consensus 16 ~lLiliis~~f~l 28 (61)
T PF06692_consen 16 PLLILIISFVFFL 28 (61)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444433333
No 38
>COG5510 Predicted small secreted protein [Function unknown]
Probab=28.10 E-value=64 Score=19.99 Aligned_cols=10 Identities=20% Similarity=0.381 Sum_probs=4.3
Q ss_pred CccchhHHHH
Q 023657 1 MASSHLFLTT 10 (279)
Q Consensus 1 ~~~~~~~l~~ 10 (279)
|+++|++.++
T Consensus 2 mk~t~l~i~~ 11 (44)
T COG5510 2 MKKTILLIAL 11 (44)
T ss_pred chHHHHHHHH
Confidence 4444444333
No 39
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=27.66 E-value=81 Score=25.49 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=21.2
Q ss_pred CHHHHHHHHHhCCCeEEEEEecccCc
Q 023657 238 DPEDIMAEIYKNGPVEVSFTVYEVKQ 263 (279)
Q Consensus 238 ~~~~ik~~l~~~GPv~v~i~v~~~F~ 263 (279)
..+.+...|.++||+-++.....++.
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~P~~~~ 122 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEAPGDSW 122 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecCCCCcc
Confidence 45889999999999999988765544
No 40
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=27.07 E-value=25 Score=27.80 Aligned_cols=15 Identities=13% Similarity=0.242 Sum_probs=7.1
Q ss_pred ccccChHHHHHHHHc
Q 023657 34 DSHILQDSIIKEVNE 48 (279)
Q Consensus 34 ~~~i~~~~~i~~~N~ 48 (279)
+...|.++-|+-+|-
T Consensus 59 aaAAi~eediQfinp 73 (189)
T PF05568_consen 59 AAAAIEEEDIQFINP 73 (189)
T ss_pred HHhhhhhhcccccCc
Confidence 334444444555554
No 41
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=26.70 E-value=81 Score=29.92 Aligned_cols=32 Identities=16% Similarity=0.032 Sum_probs=22.4
Q ss_pred HHHHH----HHHHhCCCeEEEEEecccCcCCccccccccc
Q 023657 239 PEDIM----AEIYKNGPVEVSFTVYEVKQTLTLYSSTDFS 274 (279)
Q Consensus 239 ~~~ik----~~l~~~GPv~v~i~v~~~F~~Y~iY~~g~~~ 274 (279)
.++|+ ++|.+.+||.++.+|. .|+. |++|+++
T Consensus 294 ~d~l~~~~~~~L~~g~pV~~g~Dv~-~~~~---~k~GI~d 329 (437)
T cd00585 294 MDVLKKAAIAQLKDGEPVWFGCDVG-KFSD---RKSGILD 329 (437)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEcC-hhhc---cCCcccc
Confidence 35555 6777888999999996 4555 4466554
No 42
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=26.36 E-value=73 Score=22.69 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=5.6
Q ss_pred HHHHHHHHHHhhhc
Q 023657 9 TTCLLILGVISSQT 22 (279)
Q Consensus 9 ~~~~~~~~~~~~~~ 22 (279)
.+.++|+++++.|.
T Consensus 33 vLVIIiLlImlfqs 46 (85)
T PF10717_consen 33 VLVIIILLIMLFQS 46 (85)
T ss_pred HHHHHHHHHHHHhc
Confidence 33333344444443
No 43
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=25.37 E-value=62 Score=21.90 Aligned_cols=17 Identities=6% Similarity=0.171 Sum_probs=9.5
Q ss_pred hhccccChHHHHHHHHc
Q 023657 32 KLDSHILQDSIIKEVNE 48 (279)
Q Consensus 32 ~~~~~i~~~~~i~~~N~ 48 (279)
-+..+.++++.|++.-.
T Consensus 26 l~~NPpine~mir~M~~ 42 (64)
T PF03672_consen 26 LKENPPINEKMIRAMMM 42 (64)
T ss_pred HHHCCCCCHHHHHHHHH
Confidence 34455566666665554
No 44
>smart00259 ZnF_A20 A20-like zinc fingers. A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger mediates self-association in A20. These fingers also mediate IL-1-induced NF-kappaB activation.
Probab=24.56 E-value=39 Score=18.45 Aligned_cols=19 Identities=26% Similarity=0.837 Sum_probs=16.0
Q ss_pred CCCCcccccccccCccchh
Q 023657 109 PQCSTISRILDQGHCGSCW 127 (279)
Q Consensus 109 ~~~~~v~pv~nQg~CGsCw 127 (279)
++||+...+..|+.|.-||
T Consensus 7 ~~CgF~G~~~t~~~CskCy 25 (26)
T smart00259 7 PGCGFFGNPATEGLCSKCF 25 (26)
T ss_pred CCCCCcCChhhcccCHhhc
Confidence 4788888889999998886
No 45
>PHA03072 putative viral membrane protein; Provisional
Probab=23.73 E-value=66 Score=26.37 Aligned_cols=18 Identities=6% Similarity=0.076 Sum_probs=11.4
Q ss_pred HHHhCCccccchhhhhhh
Q 023657 140 CIHFGMNLSLSVNDLLAC 157 (279)
Q Consensus 140 ~i~~~~~~~lS~Q~lidC 157 (279)
+++.-..++.|+||...-
T Consensus 133 mvkKA~k~D~sAqQFCey 150 (190)
T PHA03072 133 MVKKAAKVDPSAQQFCEY 150 (190)
T ss_pred eEeeccccCccHHHHHHH
Confidence 333334678899887654
No 46
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.52 E-value=66 Score=26.08 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=10.5
Q ss_pred CccchhHHHHHHHHHHHHhhh
Q 023657 1 MASSHLFLTTCLLILGVISSQ 21 (279)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~~ 21 (279)
|+..+++|++|.+.+++..+.
T Consensus 2 mRvl~i~Lliis~fl~a~~s~ 22 (182)
T COG2143 2 MRVLLIVLLIISLFLSACKSN 22 (182)
T ss_pred cchHHHHHHHHHHHHHHHhCC
Confidence 444455555555555544444
No 47
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=22.01 E-value=80 Score=20.04 Aligned_cols=6 Identities=0% Similarity=-0.247 Sum_probs=2.3
Q ss_pred ccchhH
Q 023657 2 ASSHLF 7 (279)
Q Consensus 2 ~~~~~~ 7 (279)
++.|.+
T Consensus 3 Kk~i~~ 8 (48)
T PRK10081 3 KKTIAA 8 (48)
T ss_pred HHHHHH
Confidence 333333
No 48
>KOG2735 consensus Phosphatidylserine synthase [Lipid transport and metabolism]
Probab=21.84 E-value=50 Score=30.66 Aligned_cols=21 Identities=48% Similarity=0.964 Sum_probs=19.5
Q ss_pred chhHHhhHHHHHHHHHHHhCC
Q 023657 125 SCWAFGAVEALSDRFCIHFGM 145 (279)
Q Consensus 125 sCwAfa~~~~le~~~~i~~~~ 145 (279)
-||.|+++.++|..+||+.|.
T Consensus 374 qcWv~~aI~~~El~IciKfg~ 394 (466)
T KOG2735|consen 374 QCWVFLAICALELLICIKFGS 394 (466)
T ss_pred hHHHHHHHHHHHhhhheeeCC
Confidence 599999999999999999883
No 49
>PF02553 CbiN: Cobalt transport protein component CbiN; InterPro: IPR003705 The cobalt transport protein CbiN is part of the active cobalt transport system involved in uptake of cobalt in to the cell involved with cobalamin biosynthesis (vitamin B12). It has been suggested that CbiN may function as the periplasmic binding protein component of the active cobalt transport system [].; GO: 0015087 cobalt ion transmembrane transporter activity, 0006824 cobalt ion transport, 0009236 cobalamin biosynthetic process, 0016020 membrane
Probab=21.81 E-value=1.1e+02 Score=21.27 Aligned_cols=20 Identities=20% Similarity=0.104 Sum_probs=11.7
Q ss_pred CccchhHHHHHHHHHHHHhh
Q 023657 1 MASSHLFLTTCLLILGVISS 20 (279)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~ 20 (279)
|+..+|+++++++++..++.
T Consensus 1 ~kn~~l~~~vv~l~~~pl~~ 20 (74)
T PF02553_consen 1 MKNLLLLLLVVALAVVPLFL 20 (74)
T ss_pred CceeHHHHHHHHHHHHHHHH
Confidence 45556666666666555554
No 50
>PHA02909 hypothetical protein; Provisional
Probab=21.53 E-value=72 Score=20.86 Aligned_cols=14 Identities=36% Similarity=0.401 Sum_probs=6.8
Q ss_pred CccchhHHHHHHHH
Q 023657 1 MASSHLFLTTCLLI 14 (279)
Q Consensus 1 ~~~~~~~l~~~~~~ 14 (279)
|.+.|||.+|.+.+
T Consensus 35 mvsfilfviiflsm 48 (72)
T PHA02909 35 MVSFILFVIIFLSM 48 (72)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555544433
No 51
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=20.86 E-value=1.3e+02 Score=24.65 Aligned_cols=57 Identities=18% Similarity=0.108 Sum_probs=36.4
Q ss_pred cccCccchhHHhhHHHHHHHHH--------HHhCCccccchhhhhhhcCCCCCCCCCCCChHHHHHHHHhhcccc
Q 023657 119 DQGHCGSCWAFGAVEALSDRFC--------IHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVT 185 (279)
Q Consensus 119 nQg~CGsCwAfa~~~~le~~~~--------i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~y~~~~G~~~ 185 (279)
.||.=+=|-+|+.+++|-.... |.+...+.+|++||.+++- .+.+.++|++..|...
T Consensus 18 tQg~~pWCa~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~~----------~~~~~i~y~ks~g~~~ 82 (175)
T PF05543_consen 18 TQGYNPWCAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFTSL----------TPNQMIKYAKSQGRNP 82 (175)
T ss_dssp --SSSS-HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH--B-----------HHHHHHHHHHTTEEE
T ss_pred ccCcCcHHHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcCC----------CHHHHHHHHHHcCcch
Confidence 4788888999999998876421 1222457889999988754 3568899988877554
No 52
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=20.15 E-value=1.2e+02 Score=22.06 Aligned_cols=9 Identities=22% Similarity=0.641 Sum_probs=5.7
Q ss_pred HHHHHHHcC
Q 023657 41 SIIKEVNEN 49 (279)
Q Consensus 41 ~~i~~~N~~ 49 (279)
+.|.+++..
T Consensus 42 ~~I~ei~p~ 50 (91)
T TIGR01165 42 EVIEEIGPD 50 (91)
T ss_pred HHHHHhCCC
Confidence 467777653
Done!