Query         023657
Match_columns 279
No_of_seqs    198 out of 1504
Neff          8.5 
Searched_HMMs 29240
Date          Mon Mar 25 10:36:17 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023657.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023657hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3hhi_A Cathepsin B-like cystei 100.0   2E-54 6.8E-59  388.0  12.4  231   33-269     5-250 (325)
  2 3pbh_A Procathepsin B; thiol p 100.0 5.5E-50 1.9E-54  358.4  19.2  228   36-270     8-253 (317)
  3 3qj3_A Cathepsin L-like protei 100.0 8.6E-50 2.9E-54  358.7  18.5  223   20-270    27-268 (331)
  4 3qt4_A Cathepsin-L-like midgut 100.0 8.1E-50 2.8E-54  358.2  17.0  224   20-270    32-266 (329)
  5 1cs8_A Human procathepsin L; p 100.0 1.4E-49 4.8E-54  355.6  15.7  222   20-270    17-249 (316)
  6 1by8_A Protein (procathepsin K 100.0   3E-49   1E-53  353.2  16.5  222   20-270    16-251 (314)
  7 2o6x_A Procathepsin L1, secret 100.0 1.6E-49 5.5E-54  354.4  14.2  221   21-270    11-243 (310)
  8 1pci_A Procaricain; zymogen, h 100.0 7.6E-49 2.6E-53  351.5  17.5  221   20-269    27-256 (322)
  9 2c0y_A Procathepsin S; proenzy 100.0   3E-49   1E-53  353.3  14.3  223   20-270    17-253 (315)
 10 3tnx_A Papain; hydrolase, cyto 100.0 2.8E-48 9.7E-53  351.1  20.2  221   20-269    71-301 (363)
 11 3pdf_A Cathepsin C, dipeptidyl 100.0 9.9E-47 3.4E-51  349.2  14.1  215   30-270   136-366 (441)
 12 1xkg_A DER P I, major mite fec 100.0 4.9E-46 1.7E-50  331.6  12.2  213   20-270    13-240 (312)
 13 3cbj_A Cathepsin B; cathepsin  100.0 3.5E-42 1.2E-46  301.4  14.1  173   96-269     5-195 (266)
 14 3qsd_A Cathepsin B-like peptid 100.0 1.2E-41   4E-46  296.2  14.9  168   97-266     2-186 (254)
 15 2xu3_A Cathepsin L1; hydrolase 100.0   1E-39 3.5E-44  278.3  13.6  148   98-270     1-153 (220)
 16 3kwz_A Cathepsin K; enzyme inh 100.0 1.7E-39 5.8E-44  276.0  13.4  146   98-270     1-152 (215)
 17 3ioq_A CMS1MS2; caricaceae, cy 100.0 1.3E-39 4.5E-44  276.2  12.6  147   98-270     1-151 (213)
 18 3i06_A Cruzipain; autocatalyti 100.0 2.8E-39 9.7E-44  274.5  12.9  147   98-269     1-153 (215)
 19 2cio_A Papain; hydrolase/inhib 100.0 4.8E-39 1.6E-43  272.5  13.8  145   98-269     1-150 (212)
 20 2bdz_A Mexicain; cysteine prot 100.0 6.3E-39 2.2E-43  272.1  13.7  142   98-266     1-145 (214)
 21 1m6d_A Cathepsin F, catsf; pap 100.0 3.1E-39 1.1E-43  274.1  11.5  141   98-266     1-143 (214)
 22 8pch_A Cathepsin H; hydrolase, 100.0   3E-39   1E-43  275.4  11.5  148   98-270     1-154 (220)
 23 1ppo_A Protease omega; hydrola 100.0 6.2E-39 2.1E-43  272.6  13.0  142   98-266     1-145 (216)
 24 1o0e_A Ervatamin C; plant cyst 100.0 8.4E-39 2.9E-43  270.2  13.5  142   98-269     1-148 (208)
 25 1iwd_A Ervatamin B; cysteine p 100.0 1.3E-38 4.5E-43  270.3  13.5  140   98-266     1-144 (215)
 26 2b1m_A SPE31; papain-like, sug 100.0 1.4E-38 4.9E-43  275.2  13.6  146   97-270     1-157 (246)
 27 1cqd_A Protein (protease II);  100.0 1.1E-38 3.8E-43  271.9  12.7  145   97-269     2-152 (221)
 28 3ovx_A Cathepsin S; hydrolase, 100.0   1E-38 3.4E-43  271.8  12.1  149   97-270     1-156 (218)
 29 1yal_A Chymopapain; hydrolase, 100.0 1.3E-38 4.4E-43  271.0  12.8  145   98-269     1-150 (218)
 30 3u8e_A Papain-like cysteine pr 100.0 8.8E-39   3E-43  272.8  11.7  146   98-275     1-150 (222)
 31 3p5u_A Actinidin; SAD, cystein 100.0 1.4E-38 4.9E-43  271.1  12.8  147   98-269     1-153 (220)
 32 3f5v_A DER P 1 allergen; aller 100.0 2.7E-38 9.3E-43  269.8  13.0  143   95-266     7-154 (222)
 33 1s4v_A Cysteine endopeptidase; 100.0 2.9E-38 9.8E-43  270.7  13.0  147   97-269     1-153 (229)
 34 2oul_A Falcipain 2; cysteine p 100.0 4.4E-38 1.5E-42  271.5  13.3  142   96-266    16-160 (241)
 35 2fo5_A Cysteine proteinase EP- 100.0 2.9E-38 9.8E-43  275.1  12.0  147   96-266     2-153 (262)
 36 3bwk_A Cysteine protease falci 100.0 6.5E-38 2.2E-42  270.8  12.7  142   96-266    18-162 (243)
 37 3f75_A Toxopain-2, cathepsin L 100.0 8.3E-38 2.8E-42  267.2   9.7  148   96-269     5-158 (224)
 38 3ois_A Cysteine protease; alph 100.0 2.3E-37 7.9E-42  274.1   8.7  205   52-274    12-225 (291)
 39 1deu_A Procathepsin X; cystein 100.0 1.4E-36 4.7E-41  267.1  13.2  161   95-270    33-206 (277)
 40 2wbf_X Serine-repeat antigen p 100.0 5.1E-33 1.7E-37  243.3  11.9  160  100-266     9-183 (265)
 41 2cb5_A Protein (bleomycin hydr  99.9   4E-23 1.4E-27  190.4  10.0   93   97-193    47-168 (453)
 42 2e01_A Cysteine proteinase 1;   99.8 3.5E-21 1.2E-25  177.7   7.8   91   97-191    52-169 (457)
 43 3pw3_A Aminopeptidase C; bleom  99.8 3.1E-21 1.1E-25  174.3   7.3   77  114-190    22-108 (383)
 44 3f75_P Toxopain-2, cathepsin L  98.6 3.5E-08 1.2E-12   73.3   3.6   56   21-78     31-90  (106)
 45 2l95_A Crammer, LP06209P; cyst  98.4 9.3E-08 3.2E-12   67.5   2.9   56   21-78     16-77  (80)
 46 2e01_A Cysteine proteinase 1;   70.4     2.7 9.3E-05   38.6   3.2   36  235-274   306-343 (457)
 47 1pxv_A Cysteine protease; hydr  67.1      43  0.0015   26.5   9.0   57  118-184    25-89  (183)
 48 1x9y_A Cysteine proteinase; ha  52.9      56  0.0019   28.7   8.1   57  118-184   201-265 (367)
 49 1cv8_A Staphopain; cysteine pr  41.8      42  0.0014   26.3   5.1   55  119-183    17-79  (174)
 50 3m3g_A EPL1 protein; fungal, p  24.5      15 0.00051   27.1  -0.1   13  119-131    56-68  (120)
 51 3sum_A Cerato-platanin-like pr  23.2      19 0.00064   27.2   0.2   14  118-131    55-68  (136)
 52 2hgo_A CASSIICOLIN; toxin, dis  22.7      14 0.00049   18.9  -0.4    9  122-130    17-25  (27)
 53 1th5_A NIFU1; iron-sulfur clus  22.7      42  0.0014   22.4   1.9   26  114-141    37-62  (74)
 54 3oj3_I Tumor necrosis factor a  20.8      41  0.0014   20.5   1.3   20  109-128    24-43  (49)
 55 1unk_A Colicin E7; immunity pr  20.2      40  0.0014   23.3   1.3   16   59-74      4-19  (87)

No 1  
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A*
Probab=100.00  E-value=2e-54  Score=387.96  Aligned_cols=231  Identities=39%  Similarity=0.762  Sum_probs=146.0

Q ss_pred             hccccChHHHHHHHHcCCCCceEeecCCCCCCCCHHHHHhhhCCCCCCCC--CCCCCCcccccccCCCCCccccccCCCC
Q 023657           33 LDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKG--LLLGVPVKTHDKSLKLPKSFDARSAWPQ  110 (279)
Q Consensus        33 ~~~~i~~~~~i~~~N~~~~~~~~~g~n~~fsd~t~~ef~~~~~~~~~~~~--~~~~~~~~~~~~~~~lP~~~D~R~~~~~  110 (279)
                      +...++.+++|++||++++.+|++++|++|+|||.+||++++|..+.+..  .....+....+...+||++||||++||+
T Consensus         5 ~~a~~~~~~~i~~~N~~~~~~~~~~~n~~f~dlt~eE~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~w~~   84 (325)
T 3hhi_A            5 EDAPVLSKAFVDRVNRLNRGIWKAKYDGVMQNITLREAKRLNGVIKKNNNASILPKRRFTEEEARAPLPSSFDSAEAWPN   84 (325)
T ss_dssp             ---------------------------------------------------CCSCBCCCCHHHHHCCCCSCEEHHHHSTT
T ss_pred             cccccccHHHHHHHHhCCCCceEEecccccccCCHHHHHHHhCCCCCCcccccccCccccccccccCCCCcEehhHhcCC
Confidence            34567788899999997678999999978999999999998876543322  1111111111223689999999999999


Q ss_pred             CCcccccccccCccchhHHhhHHHHHHHHHHHhCC-ccccchhhhhhhcCCCCCCCCCCCChHHHHHHHHhhcccccccc
Q 023657          111 CSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGM-NLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECD  189 (279)
Q Consensus       111 ~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~-~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~y~~~~G~~~e~~y  189 (279)
                      ||.|+||||||.||||||||++++||++++|+++. .+.||+|+|+||+. .++.||+||++..||+|++++|+++|+||
T Consensus        85 ~g~vtpVkdQg~CGSCWAFsa~~alE~~~~i~~~~~~~~LSeQ~LvdC~~-~~~~GC~GG~~~~A~~yi~~~Gi~~e~~y  163 (325)
T 3hhi_A           85 CPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCS-DCGDGCNGGDPDRAWAYFSSTGLVSDYCQ  163 (325)
T ss_dssp             CTTTTCCCBCCSSBCHHHHHHHHHHHHHHHHTSSCSSCCBCHHHHHHHCG-GGBCTTBCBCHHHHHHHHHHTCBCBTTTS
T ss_pred             CCccccccCCCCccccHHHHHHHHHHHHHHHHhCCCccccCHHHHHHhcc-CCCCCCCCCCHHHHHHHHHHhCCCccccc
Confidence            99999999999999999999999999999999997 89999999999986 35689999999999999999999999999


Q ss_pred             cCC-CCCCCCC--------CCCC-CCCCCcccccccccccccccccceEEeeeEEeCCCHHHHHHHHHhCCCeEEEEEec
Q 023657          190 PYF-DSTGCSH--------PGCE-PAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVY  259 (279)
Q Consensus       190 PY~-~~~~c~~--------~~c~-~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPv~v~i~v~  259 (279)
                      ||. +.  |.+        ++|. ..+.++.|...|....  +.....+.+..|.+ .++++||++|+++|||+|+|+++
T Consensus       164 PY~~~~--c~~~~~~~~~~~~C~~~~~~~~~c~~~c~~~~--~~~~~~~~~~~y~v-~~~~~i~~~i~~~GPV~v~i~~~  238 (325)
T 3hhi_A          164 PYPFPH--CSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPT--IPVVNYRSWTSYAL-QGEDDYMRELFFRGPFEVAFDVY  238 (325)
T ss_dssp             CCSSCC--CBSSSCCTTCCCBGGGCCCCCCCCCSSCSSTT--SCCCCBCEEEEEEE-CSHHHHHHHHHHHCCEEEEEEEE
T ss_pred             CCcccc--ccccccccccCCCCCCcccCCcchhhcccccc--cccceEEeecceEe-CCHHHHHHHHHHCCCEEEEEEec
Confidence            996 43  433        4565 3455677877776332  22344556778887 88999999999999999999999


Q ss_pred             ccCcCCc--ccc
Q 023657          260 EVKQTLT--LYS  269 (279)
Q Consensus       260 ~~F~~Y~--iY~  269 (279)
                      ++|++|+  ||.
T Consensus       239 ~~f~~Y~~GVy~  250 (325)
T 3hhi_A          239 EDFIAYNSGVYH  250 (325)
T ss_dssp             HHHHTCCSSEEC
T ss_pred             cccccccCceec
Confidence            8999876  554


No 2  
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A
Probab=100.00  E-value=5.5e-50  Score=358.41  Aligned_cols=228  Identities=45%  Similarity=0.873  Sum_probs=182.2

Q ss_pred             ccChHHHHHHHHcCCCCceEeecCCCCCCCCHHHHHhhhCCCCCCCCCCCCCCcccccccCCCCCccccccCCCCCCccc
Q 023657           36 HILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDKSLKLPKSFDARSAWPQCSTIS  115 (279)
Q Consensus        36 ~i~~~~~i~~~N~~~~~~~~~g~n~~fsd~t~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~D~R~~~~~~~~v~  115 (279)
                      .++.+++|++||++ +.+|++++|  |+|++.|+++.++|.++......  .+ .......+||++||||++||+|+.|+
T Consensus         8 ~~~~~~~i~~~N~~-~~~~~~~~n--f~~~~~e~~~~~lg~~~~~~~~~--~~-~~~~~~~~lP~s~DwR~~~~~c~~vt   81 (317)
T 3pbh_A            8 HPLSDELVNYVNKR-NTTWQAGHN--FYNVDMSYLKRLCGTFLGGPKPP--QR-VMFTEDLKLPASFDAREQWPQCPTIK   81 (317)
T ss_dssp             CSSCHHHHHHHHHH-TCSEEECCC--CSSCCHHHHHHTCCBCTTCCCCS--EE-ECCCSCCCCCSSEEHHHHCTTCGGGT
T ss_pred             CcccHHHHHHHHCC-CCCeEEeec--cccCCHHHHHHHcCCCCCccccC--cc-cccccccCCCCCEechhccCCCCCcC
Confidence            45778899999984 789999998  99999999999998765433211  11 11122368999999999999999999


Q ss_pred             ccccccCccchhHHhhHHHHHHHHHHHhCC--ccccchhhhhhhcCCCCCCCCCCCChHHHHHHHHhhcccccccc----
Q 023657          116 RILDQGHCGSCWAFGAVEALSDRFCIHFGM--NLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECD----  189 (279)
Q Consensus       116 pv~nQg~CGsCwAfa~~~~le~~~~i~~~~--~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~y~~~~G~~~e~~y----  189 (279)
                      ||||||.||||||||++++||++++|+++.  .+.||+|+|+||+...++.||+||++..||+|++++|+++|++|    
T Consensus        82 pVkdQg~CGSCWAFsa~~ale~~~~i~~~~~~~~~LSeq~LvdC~~~~~~~GC~GG~~~~A~~yi~~~Gi~te~~Y~~~~  161 (317)
T 3pbh_A           82 EIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHV  161 (317)
T ss_dssp             CCCBCCSSCCHHHHHHHHHHHHHHHHHTTTSCCCCBCHHHHHHHSCTTTBCGGGCBCHHHHHHHHHHTCEEBBCSTTCCC
T ss_pred             CccccCCccchHHHHHHHHHHHHHHHHhCCCCcccCCHHHHHHhccccCCCCCCCCCHHHHHHHHHHhCCCcchhccCCC
Confidence            999999999999999999999999999874  89999999999986335689999999999999999999999877    


Q ss_pred             ---cCCCCCCC------CCCCCCCCCCCccccccccccccc-ccccceEEeeeEEeCCCHHHHHHHHHhCCCeEEEEEec
Q 023657          190 ---PYFDSTGC------SHPGCEPAYPTPKCVRKCVKKNQL-WRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVY  259 (279)
Q Consensus       190 ---PY~~~~~c------~~~~c~~~~~~~~c~~~C~~~~~~-~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPv~v~i~v~  259 (279)
                         ||.... |      ..++|.....++.|...|...... +.....+....|.++.++++||++|+++|||+|+|+|+
T Consensus       162 ~c~PY~~~~-c~~~~~~~~~~C~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~v~~~e~~i~~~i~~~GPV~v~i~~~  240 (317)
T 3pbh_A          162 GCRPYSIPP-CEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY  240 (317)
T ss_dssp             BSSCCCSCC-CCCCCTTCCSCCCSCCCCCCCCCSCCSSCCSCGGGSEECBCCCEEECSCHHHHHHHHHHHCCEEEEEEEE
T ss_pred             CCcCcccCc-ccccccCcCCCCCCcCCCCcccccccCCCccceeeeeeeeeecccCCcHHHHHHHHHHHCCCEEEEEEec
Confidence               996431 3      235676545677788888754321 22233444455668789999999999999999999999


Q ss_pred             ccCcCCc--cccc
Q 023657          260 EVKQTLT--LYSS  270 (279)
Q Consensus       260 ~~F~~Y~--iY~~  270 (279)
                      ++|++|+  ||.+
T Consensus       241 ~~f~~Y~~GVy~~  253 (317)
T 3pbh_A          241 SDFLLYKSGVYQH  253 (317)
T ss_dssp             GGGGGEEEEEECC
T ss_pred             ccccCCCCcEEcc
Confidence            9999877  5543


No 3  
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0
Probab=100.00  E-value=8.6e-50  Score=358.74  Aligned_cols=223  Identities=26%  Similarity=0.445  Sum_probs=176.2

Q ss_pred             hhccccccc-chhhhccccChHH--HHHHHHcC---CCCceEeecCCCCCCCCHHHHHhh-hCCCCCCCCCCCCCCcccc
Q 023657           20 SQTFAEGVV-SKLKLDSHILQDS--IIKEVNEN---PKAGWKAARNPQFSNYTVGQFKHL-LGVKPTPKGLLLGVPVKTH   92 (279)
Q Consensus        20 ~~~~~~~~~-~~~~~~~~i~~~~--~i~~~N~~---~~~~~~~g~n~~fsd~t~~ef~~~-~~~~~~~~~~~~~~~~~~~   92 (279)
                      ..+.+.|.. .|...|+.||.++  +|++||++   .+.+|++|+| +|+|||.+||+++ ++.+...............
T Consensus        27 ~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~hN~~~~~g~~sy~lg~N-~FaDlt~eEf~~~~~~~~~~~~~~~~~~~~~~~  105 (331)
T 3qj3_A           27 TTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVN-LFTDMTPEEMKAYTHGLIMPADLHKNGIPIKTR  105 (331)
T ss_dssp             HHTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSEEECCS-TTTTCCHHHHHHHHSCCCCCSSTTTTCEEECSG
T ss_pred             HHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCceeeccc-ccccCCHHHHHHHhccccccccccccCcccccc
Confidence            355677765 6778899999997  49999985   4689999999 9999999999984 4544322111111111111


Q ss_pred             -----cccCCCCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCC--ccccchhhhhhhcCCCCCCC
Q 023657           93 -----DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGM--NLSLSVNDLLACCGFLCGDG  165 (279)
Q Consensus        93 -----~~~~~lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~--~~~lS~Q~lidC~~~~~~~g  165 (279)
                           ....+||++||||++    |.|+||||||.||||||||++++||++++|+++.  .+.||+|+|+||+.  .+.|
T Consensus       106 ~~~~~~~~~~lP~s~DwR~~----g~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~~~LSeQ~LvdC~~--~~~G  179 (331)
T 3qj3_A          106 EDLGLNASVRYPASFDWRDQ----GMVSPVKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVP--NALG  179 (331)
T ss_dssp             GGGTCCSSCCCCSSEEGGGG----TCSCCCCBCCSSCCHHHHHHHHHHHHHHHHHHCTTSCCCBCHHHHHHHCT--TSCG
T ss_pred             cccccccccCCCcceecccC----CccCCCccCcccchhhHHHHHHHHHHHHHHHhCCCcccCcCHHHHhhhcc--CCCC
Confidence                 023589999999998    7799999999999999999999999999999998  89999999999987  3789


Q ss_pred             CCCCChHHHHHHHHhh-cccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eC-CCHHHH
Q 023657          166 CDGGYPISAWRYFVHH-GVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDI  242 (279)
Q Consensus       166 C~GG~~~~a~~y~~~~-G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~-~~~~~i  242 (279)
                      |+||++..|++|+.++ |+++|++|||.+.+                 ..|....    ....+.+.+|. ++ .++++|
T Consensus       180 C~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~-----------------~~C~~~~----~~~~~~i~~~~~v~~~~e~~l  238 (331)
T 3qj3_A          180 CSGGWMNDAFTYVAQNGGIDSEGAYPYEMAD-----------------GNCHYDP----NQVAARLSGYVYLSGPDENML  238 (331)
T ss_dssp             GGCCCHHHHHHHHHHHTCEEBTTTSCCCSSC-----------------CCCCCCT----TSEEECCSEEEEESSCCHHHH
T ss_pred             CCCCCHHHHHHHHHHcCCcCcccccCccCCC-----------------CCCCCCc----ccceeEeeEEEEeCCCCHHHH
Confidence            9999999999999998 99999999997642                 1333222    13345677777 66 489999


Q ss_pred             HHHHHhCCCeEEEEEecccCcCCc--cccc
Q 023657          243 MAEIYKNGPVEVSFTVYEVKQTLT--LYSS  270 (279)
Q Consensus       243 k~~l~~~GPv~v~i~v~~~F~~Y~--iY~~  270 (279)
                      |++|+++|||+|+|+++.+|+.|+  ||..
T Consensus       239 k~al~~~GPV~v~i~a~~~f~~Y~~Gvy~~  268 (331)
T 3qj3_A          239 ADMVATKGPVAVAFDADDPFGSYSGGVYYN  268 (331)
T ss_dssp             HHHHHHHCCEEEEECCCTTGGGEEEEEECC
T ss_pred             HHHHHhCCCEEEEEEcccccccccCceEeC
Confidence            999999999999999987788766  5543


No 4  
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor}
Probab=100.00  E-value=8.1e-50  Score=358.19  Aligned_cols=224  Identities=24%  Similarity=0.374  Sum_probs=174.7

Q ss_pred             hhccccccc-chhhhccccChHH--HHHHHHcC---CCCceEeecCCCCCCCCHHHHHhhhCCCCCCCCCCCC-CCcccc
Q 023657           20 SQTFAEGVV-SKLKLDSHILQDS--IIKEVNEN---PKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLG-VPVKTH   92 (279)
Q Consensus        20 ~~~~~~~~~-~~~~~~~~i~~~~--~i~~~N~~---~~~~~~~g~n~~fsd~t~~ef~~~~~~~~~~~~~~~~-~~~~~~   92 (279)
                      ..+.+.|.. .|...|+.||.++  +|++||++   .+.+|++|+| +|+|||.+||++++|.++........ ......
T Consensus        32 ~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~hN~~~~~g~~sy~lg~N-~FaDlt~eEf~~~~g~~~~~~~~~~~~~~~~~~  110 (329)
T 3qt4_A           32 LTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMN-QFGDMSKEEFLAYVNRGKAQKPKHPENLRMPYV  110 (329)
T ss_dssp             HHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEECCC-GGGGCCHHHHHHHHHHTCCC------CCEEECC
T ss_pred             HHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCeEEecc-ccccCCHHHHHHhcCCccccccccccccccccc
Confidence            345677766 5777899999997  49999984   4689999999 99999999999977654321111000 000000


Q ss_pred             cccCCCCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChH
Q 023657           93 DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPI  172 (279)
Q Consensus        93 ~~~~~lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~  172 (279)
                      ....+||++||||++   +  |+||||||.||||||||++++||++++|+++..+.||+|+|+||+....+.||+||++.
T Consensus       111 ~~~~~lP~~~DwR~~---~--vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~LSeQ~LvdC~~~~g~~GC~GG~~~  185 (329)
T 3qt4_A          111 SSKKPLAASVDWRSN---A--VSEVKDQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMD  185 (329)
T ss_dssp             CCCSCCCSCEECTTT---S--CCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCGGGTCCTTBCCCHH
T ss_pred             CCccCCCCCEEcccc---c--cCCCccCCCCcChHHHHHHHHHHHHHHHHcCCcccCCHHHHHHhccccCCCCCCCCChh
Confidence            112589999999985   3  99999999999999999999999999999999999999999999863346899999999


Q ss_pred             HHHHHHHhhcccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eC-CCHHHHHHHHHhCC
Q 023657          173 SAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYKNG  250 (279)
Q Consensus       173 ~a~~y~~~~G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~-~~~~~ik~~l~~~G  250 (279)
                      .|++|+.++|+++|++|||.+.+             +    .|.....    ...+.+.+|. ++ .++++||++|+++|
T Consensus       186 ~a~~yi~~~Gi~~e~~yPY~~~~-------------~----~C~~~~~----~~~~~i~~~~~v~~~~e~~lk~al~~~G  244 (329)
T 3qt4_A          186 SAFSYIHDYGIMSESAYPYEAQG-------------D----YCRFDSS----QSVTTLSGYYDLPSGDENSLADAVGQAG  244 (329)
T ss_dssp             HHHHHHHHSCBCBTTTSCCCSSC-------------C----CCCCCGG----GCCBCCSEEEECCTTCHHHHHHHHHHTC
T ss_pred             HHHHHHHHcCCCcHHHeeeecCC-------------C----CCCCCcc----cceEEeceEEEecCCCHHHHHHHHHhCC
Confidence            99999999999999999997641             1    2332211    2334567777 65 58899999999999


Q ss_pred             CeEEEEEecccCcCCc--cccc
Q 023657          251 PVEVSFTVYEVKQTLT--LYSS  270 (279)
Q Consensus       251 Pv~v~i~v~~~F~~Y~--iY~~  270 (279)
                      ||+|+|+++.+|+.|+  ||..
T Consensus       245 PV~v~i~a~~~f~~Y~~GVy~~  266 (329)
T 3qt4_A          245 PVAVAIDATDELQFYSGGLFYD  266 (329)
T ss_dssp             CEEEEECCCGGGTTEEEEEECC
T ss_pred             CEEEEEecChhhhhccCceeec
Confidence            9999999988999876  5543


No 5  
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A*
Probab=100.00  E-value=1.4e-49  Score=355.63  Aligned_cols=222  Identities=23%  Similarity=0.387  Sum_probs=175.5

Q ss_pred             hhcccccccchhhhccccChHH--HHHHHHcC---CCCceEeecCCCCCCCCHHHHHh-hhCCCCCCCCCCCCCCccccc
Q 023657           20 SQTFAEGVVSKLKLDSHILQDS--IIKEVNEN---PKAGWKAARNPQFSNYTVGQFKH-LLGVKPTPKGLLLGVPVKTHD   93 (279)
Q Consensus        20 ~~~~~~~~~~~~~~~~~i~~~~--~i~~~N~~---~~~~~~~g~n~~fsd~t~~ef~~-~~~~~~~~~~~~~~~~~~~~~   93 (279)
                      ..+.|.|...|...|+.||.++  +|++||++   .+.+|++|+| +|+|||.+||++ ++|.++....  .... ...+
T Consensus        17 ~~~~k~Y~~~E~~~R~~iF~~N~~~I~~~N~~~~~g~~~~~~g~N-~F~Dlt~eEf~~~~~g~~~~~~~--~~~~-~~~~   92 (316)
T 1cs8_A           17 AMHNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMN-AFGDMTSEEFRQVMNGFQNRKPR--KGKV-FQEP   92 (316)
T ss_dssp             HHTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCC-TTTTCCHHHHHHHHCCBCCCCCS--CCEE-CCCC
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHHHHHHHhhhccccCCcceEEccC-ccCCCCHHHHHHHhcCCCCCccc--cCcc-ccCc
Confidence            4567777667888899999997  59999974   2579999999 999999999997 4454432211  1001 1112


Q ss_pred             ccCCCCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHH
Q 023657           94 KSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPIS  173 (279)
Q Consensus        94 ~~~~lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~  173 (279)
                      ...+||++||||++    |.|+||||||.||||||||++++||++++|+++..+.||+|+|+||+....+.||+||++..
T Consensus        93 ~~~~lP~~~DwR~~----g~vtpVkdQg~CGSCWAFsa~~alE~~~~i~~g~~~~LSeq~lvdC~~~~g~~gC~GG~~~~  168 (316)
T 1cs8_A           93 LFYEAPRSVDWREK----GYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDY  168 (316)
T ss_dssp             TTCCCCSCEEGGGG----TCCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCGGGTCCGGGCBCHHH
T ss_pred             cccCCCCcEecCCC----CCcCCCCcccCCccHHHHHHHHHHHHHHHHHcCCCcCcCHHHHHHhccccCCCCCCCCCHHH
Confidence            23479999999998    77999999999999999999999999999999999999999999998522468999999999


Q ss_pred             HHHHHH-hhcccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eCCCHHHHHHHHHhCCC
Q 023657          174 AWRYFV-HHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGP  251 (279)
Q Consensus       174 a~~y~~-~~G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~ik~~l~~~GP  251 (279)
                      ||+|+. +.|+++|++|||.+.+             +    .|....    ....+.+.+|. ++.++++||++|+++||
T Consensus       169 a~~yi~~~~Gi~~e~~yPY~~~~-------------~----~C~~~~----~~~~~~i~~~~~v~~~~~~ik~~l~~~GP  227 (316)
T 1cs8_A          169 AFQYVQDNGGLDSEESYPYEATE-------------E----SCKYNP----KYSVANDAGFVDIPKQEKALMKAVATVGP  227 (316)
T ss_dssp             HHHHHHHHTCEEBTTTSCCCSSC-------------C----CCCCCG----GGEEECCCCEEECCSCHHHHHHHHHHHCC
T ss_pred             HHHHHHHhCCcCchhccCCCCCC-------------C----CcCCCC----ccceeEeccEEEeCCCHHHHHHHHHhcCC
Confidence            999997 6799999999997641             1    333221    12345667777 66689999999999999


Q ss_pred             eEEEEEec-ccCcCCc--cccc
Q 023657          252 VEVSFTVY-EVKQTLT--LYSS  270 (279)
Q Consensus       252 v~v~i~v~-~~F~~Y~--iY~~  270 (279)
                      |+|+|+++ ++|+.|+  ||.+
T Consensus       228 V~v~i~~~~~~f~~Y~~Gvy~~  249 (316)
T 1cs8_A          228 ISVAIDAGHESFLFYKEGIYFE  249 (316)
T ss_dssp             EEEEECCCSHHHHTEEEEEECC
T ss_pred             EEEEEecCChhhccccCceECC
Confidence            99999998 5899876  5543


No 6  
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A
Probab=100.00  E-value=3e-49  Score=353.24  Aligned_cols=222  Identities=24%  Similarity=0.389  Sum_probs=172.5

Q ss_pred             hhcccccc-cchhhhccccChHH--HHHHHHcCC---CCceEeecCCCCCCCCHHHHHh-hhCCCCCCCCCCCCCCcccc
Q 023657           20 SQTFAEGV-VSKLKLDSHILQDS--IIKEVNENP---KAGWKAARNPQFSNYTVGQFKH-LLGVKPTPKGLLLGVPVKTH   92 (279)
Q Consensus        20 ~~~~~~~~-~~~~~~~~~i~~~~--~i~~~N~~~---~~~~~~g~n~~fsd~t~~ef~~-~~~~~~~~~~~~~~~~~~~~   92 (279)
                      ..+.+.|. ..|...|+.||.++  +|++||++.   +.+|++|+| +|+|||.+||++ ++|.++........... ..
T Consensus        16 ~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~g~~~~~~g~N-~FaDlt~eEf~~~~~g~~~~~~~~~~~~~~-~~   93 (314)
T 1by8_A           16 KTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMN-HLGDMTSEEVVQKMTGLKVPLSHSRSNDTL-YI   93 (314)
T ss_dssp             HHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSEEECCC-TTSSSCHHHHHHHSCCCCCCSCCCCSSSSS-BC
T ss_pred             HHhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccCcceEEccc-ccccCCHHHHHHHhccCCCCcccccCCccc-cc
Confidence            45567774 46788899999996  599999753   478999999 999999999987 55554322211010111 11


Q ss_pred             cccCC-CCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCCh
Q 023657           93 DKSLK-LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYP  171 (279)
Q Consensus        93 ~~~~~-lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~  171 (279)
                      +...+ ||++||||++    |.|+||||||.||||||||++++||++++|+++..+.||+|+|+||+.  .+.||+||++
T Consensus        94 ~~~~~~lP~~~DwR~~----g~vtpVkdQg~CGSCWAFs~~~alE~~~~i~~g~~~~LSeq~lvdC~~--~~~gC~GG~~  167 (314)
T 1by8_A           94 PEWEGRAPDSVDYRKK----GYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS--ENDGCGGGYM  167 (314)
T ss_dssp             CCCSSCCCSCCBSTTT----TCSCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHTTCT--TSCGGGCCCS
T ss_pred             cccccCCCCeEeCCCC----CCCCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCCcccCHHHHHHhcC--CCCCCcCCCH
Confidence            11224 9999999998    779999999999999999999999999999999999999999999986  5789999999


Q ss_pred             HHHHHHHH-hhcccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eC-CCHHHHHHHHHh
Q 023657          172 ISAWRYFV-HHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYK  248 (279)
Q Consensus       172 ~~a~~y~~-~~G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~-~~~~~ik~~l~~  248 (279)
                      ..||+|+. +.|+++|++|||.+.+             +    .|.....    ...+.+.+|. ++ .++++||++|++
T Consensus       168 ~~a~~yi~~~~Gi~~e~~yPY~~~~-------------~----~C~~~~~----~~~~~i~~~~~v~~~~~~~i~~al~~  226 (314)
T 1by8_A          168 TNAFQYVQKNRGIDSEDAYPYVGQE-------------E----SCMYNPT----GKAAKCRGYREIPEGNEKALKRAVAR  226 (314)
T ss_dssp             HHHHHHHHHTTCBCBTTTSCCCSSC-------------C----CCCCCGG----GCCBCCSCEEECCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcCcHhhCCCCCCC-------------C----CcCCCCc----cceeEECcEEEecCCCHHHHHHHHHH
Confidence            99999998 4699999999997642             1    2322110    1234456776 65 488999999999


Q ss_pred             CCCeEEEEEec-ccCcCCc--cccc
Q 023657          249 NGPVEVSFTVY-EVKQTLT--LYSS  270 (279)
Q Consensus       249 ~GPv~v~i~v~-~~F~~Y~--iY~~  270 (279)
                      +|||+|+|+++ ++|+.|+  ||.+
T Consensus       227 ~GPV~v~i~~~~~~f~~Y~~Gvy~~  251 (314)
T 1by8_A          227 VGPVSVAIDASLTSFQFYSKGVYYD  251 (314)
T ss_dssp             HCCEEEEECCCSHHHHTEEEECBCC
T ss_pred             cCCEEEEEEeChHHhhhccCceecC
Confidence            99999999998 6899876  5543


No 7  
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica}
Probab=100.00  E-value=1.6e-49  Score=354.36  Aligned_cols=221  Identities=23%  Similarity=0.386  Sum_probs=171.3

Q ss_pred             hccccccc-chhhhccccChHH--HHHHHHcCC---CCceEeecCCCCCCCCHHHHHh-hhC-CCCCCCCCCCCCCcccc
Q 023657           21 QTFAEGVV-SKLKLDSHILQDS--IIKEVNENP---KAGWKAARNPQFSNYTVGQFKH-LLG-VKPTPKGLLLGVPVKTH   92 (279)
Q Consensus        21 ~~~~~~~~-~~~~~~~~i~~~~--~i~~~N~~~---~~~~~~g~n~~fsd~t~~ef~~-~~~-~~~~~~~~~~~~~~~~~   92 (279)
                      .+.|.|.. .|...| .||.++  +|++||++.   +.+|++|+| +|+|||.+||++ ++| ...............  
T Consensus        11 ~~~K~Y~~~~E~~~R-~iF~~N~~~I~~~N~~~~~g~~~~~~g~N-~F~Dlt~eEf~~~~~g~~~~~~~~~~~~~~~~--   86 (310)
T 2o6x_A           11 MYNKEYNGADDQHRR-NIWEKNVKHIQEHNLRHDLGLVTYTLGLN-QFTDMTFEEFKAKYLTEMSRASDILSHGVPYE--   86 (310)
T ss_dssp             HHTCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHTTSSSEEECCC-TTTTSCHHHHHHHHCCCCCCGGGGSCSSEECC--
T ss_pred             HhCCCCCCHHHHHHH-HHHHHHHHHHHHHHhhhccCCCcEEEecc-ccCCCCHHHHHHHhcCCCCCcccccccCCccc--
Confidence            45666654 566778 999986  599999752   579999999 999999999997 555 332111100100111  


Q ss_pred             cccCCCCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChH
Q 023657           93 DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPI  172 (279)
Q Consensus        93 ~~~~~lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~  172 (279)
                      ....+||++||||++    |.|+||||||.||||||||++++||++++|+++..+.||+|+|+||+....+.||+||++.
T Consensus        87 ~~~~~lP~~~DwR~~----g~vtpVkdQg~CGSCWAfa~~~alE~~~~i~~g~~~~LS~q~lvdC~~~~~~~gC~GG~~~  162 (310)
T 2o6x_A           87 ANNRAVPDKIDWRES----GYVTEVKDQGNCGSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLME  162 (310)
T ss_dssp             C----CCSCEEGGGG----TCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHSSCCCBCHHHHHHHCGGGTCCGGGCCCHH
T ss_pred             cccCCCCCeEecCcC----CCCCCcccCCCCCccHHHHhHHHHHHHHHHHhCCCcCcCHHHHHHhhhccCCCCCCCCCHH
Confidence            112369999999998    7799999999999999999999999999999999999999999999852237899999999


Q ss_pred             HHHHHHHhhcccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eC-CCHHHHHHHHHhCC
Q 023657          173 SAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYKNG  250 (279)
Q Consensus       173 ~a~~y~~~~G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~-~~~~~ik~~l~~~G  250 (279)
                      .||+|+.+.|+++|++|||.+.+             +    .|.....    ...+.+.+|. ++ .++++||++|+++|
T Consensus       163 ~a~~yi~~~Gi~~e~~yPY~~~~-------------~----~C~~~~~----~~~~~i~~~~~v~~~~~~~i~~~l~~~G  221 (310)
T 2o6x_A          163 NAYQYLKQFGLETESSYPYTAVE-------------G----QCRYNKQ----LGVAKVTGFYTVHSGSEVELKNLVGAEG  221 (310)
T ss_dssp             HHHHHHTTSCBCBTTTSCCCSSC-------------C----CCCCCGG----GCCEEEEEEEEECSCCHHHHHHHHHHHC
T ss_pred             HHHHHHHHCCcCchhcCCCCCCC-------------C----CccCCCC----CCceEeCeEEEeCCCCHHHHHHHHHhcC
Confidence            99999998899999999997641             1    2332111    2345677777 76 58999999999999


Q ss_pred             CeEEEEEecccCcCCc--cccc
Q 023657          251 PVEVSFTVYEVKQTLT--LYSS  270 (279)
Q Consensus       251 Pv~v~i~v~~~F~~Y~--iY~~  270 (279)
                      ||+|+|+++++|+.|+  ||.+
T Consensus       222 PV~v~i~~~~~f~~Y~~Gvy~~  243 (310)
T 2o6x_A          222 PAAVAVDVESDFMMYRSGIYQS  243 (310)
T ss_dssp             CEEEEECCCHHHHTEEEEEECC
T ss_pred             CeEEEEecchhhhhCCCceecC
Confidence            9999999998999877  5553


No 8  
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1
Probab=100.00  E-value=7.6e-49  Score=351.53  Aligned_cols=221  Identities=23%  Similarity=0.359  Sum_probs=172.1

Q ss_pred             hhcccccc-cchhhhccccChHH--HHHHHHcCCCCceEeecCCCCCCCCHHHHHhhh-CCCCCCCCCCCCCCccccccc
Q 023657           20 SQTFAEGV-VSKLKLDSHILQDS--IIKEVNENPKAGWKAARNPQFSNYTVGQFKHLL-GVKPTPKGLLLGVPVKTHDKS   95 (279)
Q Consensus        20 ~~~~~~~~-~~~~~~~~~i~~~~--~i~~~N~~~~~~~~~g~n~~fsd~t~~ef~~~~-~~~~~~~~~~~~~~~~~~~~~   95 (279)
                      ..+.+.|. ..|...|+.||.++  +|++||++ +.+|++|+| +|+|||.+||++++ |....................
T Consensus        27 ~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~~N~~-~~~~~~g~N-~FaDlt~eEf~~~~~g~~~~~~~~~~~~~~~~~~~~  104 (322)
T 1pci_A           27 LNHNKFYENVDEKLYRFEIFKDNLNYIDETNKK-NNSYWLGLN-EFADLSNDEFNEKYVGSLIDATIEQSYDEEFINEDI  104 (322)
T ss_dssp             HTTTCCCSSHHHHHHHHHHHHHHHHHHHHHHTT-CCSEEECSC-TTTTSCHHHHHHHHCCCBCCCSSCCCCSEECCCCCC
T ss_pred             HHcCCCCCCHHHHHHHHHHHHHHHHHHHHhhcc-CCceEEecC-ccccCCHHHHHHHhcCCCCccccccccccccccccc
Confidence            45577774 56778899999995  59999985 789999999 99999999999854 544322111110000111223


Q ss_pred             CCCCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHHHH
Q 023657           96 LKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAW  175 (279)
Q Consensus        96 ~~lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~  175 (279)
                      .+||++||||++    |.|+||||||.||||||||++++||++++|+++..+.||+|+|+||+.  .+.||+||++..||
T Consensus       105 ~~lP~~~DwR~~----g~vt~VkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~lSeq~lvdC~~--~~~gC~GG~~~~a~  178 (322)
T 1pci_A          105 VNLPENVDWRKK----GAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCER--RSHGCKGGYPPYAL  178 (322)
T ss_dssp             CCSCSCEETTTT----TCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHSCT--TSCGGGCBCHHHHH
T ss_pred             cCCCCeEecccC----CCCCCccccccCCccHHHHHHHHHHHHHHHHcCCccccCHHHHHhhcC--CCCCCCCCCHHHHH
Confidence            479999999998    779999999999999999999999999999999999999999999985  57899999999999


Q ss_pred             HHHHhhcccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eC-CCHHHHHHHHHhCCCeE
Q 023657          176 RYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYKNGPVE  253 (279)
Q Consensus       176 ~y~~~~G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~-~~~~~ik~~l~~~GPv~  253 (279)
                      +|+.++|+++|++|||.+.+             +    .|.....   ....+.+.+|. ++ .++++||++|++ |||+
T Consensus       179 ~yi~~~Gi~~e~~yPY~~~~-------------~----~C~~~~~---~~~~~~i~~~~~v~~~~e~~l~~~l~~-GPV~  237 (322)
T 1pci_A          179 EYVAKNGIHLRSKYPYKAKQ-------------G----TCRAKQV---GGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVS  237 (322)
T ss_dssp             HHHHHHCBCBTTTSCCCSSC-------------C----CCTTTTC---CSCCBCCCCEEECCSSBHHHHHHHHHH-SCEE
T ss_pred             HHHHHhCCCchhhCCCCCCC-------------C----CCCCCCC---CCceEEEeeEEEeCCCcHHHHHHHHHH-CCEE
Confidence            99999999999999997642             1    2222110   01234566776 65 478899999976 9999


Q ss_pred             EEEEec-ccCcCCc--ccc
Q 023657          254 VSFTVY-EVKQTLT--LYS  269 (279)
Q Consensus       254 v~i~v~-~~F~~Y~--iY~  269 (279)
                      |+|.++ ++|+.|+  ||.
T Consensus       238 v~i~~~~~~f~~Y~~Gvy~  256 (322)
T 1pci_A          238 VVVESKGRPFQLYKGGIFE  256 (322)
T ss_dssp             EEECTTCHHHHTEEEEEEC
T ss_pred             EEEecccccccccCCeEeC
Confidence            999997 6899876  554


No 9  
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens}
Probab=100.00  E-value=3e-49  Score=353.32  Aligned_cols=223  Identities=20%  Similarity=0.357  Sum_probs=172.9

Q ss_pred             hhcccccc-cchhhhccccChHH--HHHHHHcCC---CCceEeecCCCCCCCCHHHHHh-hhCCCCCCCCCCCCCCcccc
Q 023657           20 SQTFAEGV-VSKLKLDSHILQDS--IIKEVNENP---KAGWKAARNPQFSNYTVGQFKH-LLGVKPTPKGLLLGVPVKTH   92 (279)
Q Consensus        20 ~~~~~~~~-~~~~~~~~~i~~~~--~i~~~N~~~---~~~~~~g~n~~fsd~t~~ef~~-~~~~~~~~~~~~~~~~~~~~   92 (279)
                      ..+.|.|. ..|...|+.||.++  +|++||++.   +.+|++|+| +|+|||.+||++ ++|.++..... ..... ..
T Consensus        17 ~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~g~~s~~~g~N-~FaDlt~eEf~~~~~g~~~~~~~~-~~~~~-~~   93 (315)
T 2c0y_A           17 KTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMN-HLGDMTSEEVMSLMSSLRVPSQWQ-RNITY-KS   93 (315)
T ss_dssp             HHHTCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCC-GGGGCCHHHHHHHTTSBCCCCGGG-SCBCC---
T ss_pred             HHhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccCcceEeccC-ccccCCHHHHHHHhcCCCCCcccc-CCccc-cC
Confidence            34567774 46888899999996  599999752   479999999 999999999977 55554322111 11111 11


Q ss_pred             cccCCCCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhc-CCCCCCCCCCCCh
Q 023657           93 DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACC-GFLCGDGCDGGYP  171 (279)
Q Consensus        93 ~~~~~lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~-~~~~~~gC~GG~~  171 (279)
                      +...+||++||||++    |.|+||||||.||||||||++++||++++|+++..+.||+|+|+||+ ...++.||+||++
T Consensus        94 ~~~~~lP~~~DwR~~----g~vtpVkdQg~CGSCWAfs~~~alE~~~~i~~g~~~~LSeq~lvdC~~~~~~~~gC~GG~~  169 (315)
T 2c0y_A           94 NPNRILPDSVDWREK----GCVTEVKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFM  169 (315)
T ss_dssp             ----CCCSCEETTTT----TCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHSCGGGTCCGGGCBCH
T ss_pred             cccCCCCCeEecCCC----CCcCCCcCcccCCCcHHHHHHHHHHHHHHHHhCCCcCcCHHHHHhhcccccCCCCCCCCCH
Confidence            223479999999998    77999999999999999999999999999999999999999999998 3234789999999


Q ss_pred             HHHHHHHHh-hcccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eC-CCHHHHHHHHHh
Q 023657          172 ISAWRYFVH-HGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYK  248 (279)
Q Consensus       172 ~~a~~y~~~-~G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~-~~~~~ik~~l~~  248 (279)
                      ..||+|+.+ .|+++|++|||.+.+             +    .|.....    .....+.+|. ++ .++++||++|++
T Consensus       170 ~~a~~yi~~~~Gi~~e~~yPY~~~~-------------~----~C~~~~~----~~~~~i~~~~~v~~~~~~~i~~al~~  228 (315)
T 2c0y_A          170 TTAFQYIIDNKGIDSDASYPYKAMD-------------Q----KCQYDSK----YRAATCSKYTELPYGREDVLKEAVAN  228 (315)
T ss_dssp             HHHHHHHHHHTCEEBTTTSCCCSSC-------------C----CCCCCGG----GEEECCCEEEECCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcCchhcCCCccCC-------------C----CcccCCc----ccccccCCeEEeCCCCHHHHHHHHHH
Confidence            999999985 699999999997642             1    2332211    2335567776 65 488999999999


Q ss_pred             CCCeEEEEEec-ccCcCCc--cccc
Q 023657          249 NGPVEVSFTVY-EVKQTLT--LYSS  270 (279)
Q Consensus       249 ~GPv~v~i~v~-~~F~~Y~--iY~~  270 (279)
                      +|||+|+|+++ ++|+.|+  ||.+
T Consensus       229 ~GPV~v~i~~~~~~f~~Y~~Gvy~~  253 (315)
T 2c0y_A          229 KGPVSVGVDARHPSFFLYRSGVYYE  253 (315)
T ss_dssp             TCCEEEEECCCSHHHHTEEEEEECC
T ss_pred             cCCEEEEEecCchhhhccCCCcccC
Confidence            99999999998 6899876  5543


No 10 
>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya}
Probab=100.00  E-value=2.8e-48  Score=351.07  Aligned_cols=221  Identities=22%  Similarity=0.321  Sum_probs=167.8

Q ss_pred             hhccccccc-chhhhccccChHH--HHHHHHcCCCCceEeecCCCCCCCCHHHHHh-hhCCCCCCCCCCCC-CCcccccc
Q 023657           20 SQTFAEGVV-SKLKLDSHILQDS--IIKEVNENPKAGWKAARNPQFSNYTVGQFKH-LLGVKPTPKGLLLG-VPVKTHDK   94 (279)
Q Consensus        20 ~~~~~~~~~-~~~~~~~~i~~~~--~i~~~N~~~~~~~~~g~n~~fsd~t~~ef~~-~~~~~~~~~~~~~~-~~~~~~~~   94 (279)
                      ..+.|.|.. .|...|+.||.++  +|++||++ +.+|++|+| +|+|||.+||++ +++..+........ ........
T Consensus        71 ~~~~K~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~-~~sy~~g~N-~FaDlT~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (363)
T 3tnx_A           71 LKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKK-NNSYWLGLN-VFADMSNDEFKEKYTGSIAGNYTTTELSYEEVLNDG  148 (363)
T ss_dssp             HHTTCCCSSHHHHHHHHHHHHHHHHHHHHHTTS-CCSEEECSC-TTTTSCHHHHHHHHSCSSCSCCCCSSSSSSCCCCCS
T ss_pred             HHcCCcCCCHHHHHHHHHHHHHHHHHHHHHHcC-CCCeEEecc-ccccCCHHHHHHHhcccccccccccccccccccCcc
Confidence            355667644 6777899999996  59999985 789999999 999999999998 55544332221111 11111233


Q ss_pred             cCCCCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHHH
Q 023657           95 SLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISA  174 (279)
Q Consensus        95 ~~~lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a  174 (279)
                      ..+||++||||++    |.|+||||||.||||||||++++||++++|+++..+.||+|+|+||+.  .+.||+||++..|
T Consensus       149 ~~~lP~s~DWR~~----g~VtpVkdQG~CGSCWAFsa~~alE~~~~i~tg~~~~LSeQ~LvdC~~--~~~GC~GG~~~~a  222 (363)
T 3tnx_A          149 DVNIPEYVDWRQK----GAVTPVKNQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDR--RSYGCNGGYPWSA  222 (363)
T ss_dssp             CCCCCSCEEGGGG----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT--TSCTTBCCCHHHH
T ss_pred             cCCCCcceecccC----CCCCCCccCCcCCchhhhhhcccHHHHHHHHcCCCCCcCHHHHhcccC--CCCCCCCCChHHH
Confidence            4689999999998    789999999999999999999999999999999999999999999987  4689999999999


Q ss_pred             HHHHHhhcccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eC-CCHHHHHHHHHhCCCe
Q 023657          175 WRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYKNGPV  252 (279)
Q Consensus       175 ~~y~~~~G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~-~~~~~ik~~l~~~GPv  252 (279)
                      |+|+.++|+++|++|||.+.++             .|...+..       .....+..|. +. .++..|+.+| .+|||
T Consensus       223 ~~yi~~~Gi~~e~~yPY~~~~~-------------~c~~~~~~-------~~~~~~~~~~~~~~~~e~~l~~~v-~~gPv  281 (363)
T 3tnx_A          223 LQLVAQYGIHYRNTYPYEGVQR-------------YCRSREKG-------PYAAKTDGVRQVQPYNEGALLYSI-ANQPV  281 (363)
T ss_dssp             HHHHHHTCBCBTTTSCCCSSCC-------------CCCGGGGC-------SCSBCCCEEEEECSSCHHHHHHHH-TTSCE
T ss_pred             HhHHHhcCccccccCCCcCcCC-------------CcccCCCC-------CceeeccceEEcchhhHHHHHHHH-HcCCc
Confidence            9999999999999999975421             11111111       1122344454 44 4666666666 68999


Q ss_pred             EEEEEe-cccCcCCc--ccc
Q 023657          253 EVSFTV-YEVKQTLT--LYS  269 (279)
Q Consensus       253 ~v~i~v-~~~F~~Y~--iY~  269 (279)
                      +|+|.+ +++|++|+  ||.
T Consensus       282 svai~a~~~~F~~Y~sGVy~  301 (363)
T 3tnx_A          282 SVVLEAAGKDFQLYRGGIFV  301 (363)
T ss_dssp             EEEECCCSHHHHTEEEEEEC
T ss_pred             EEEEEecchhhhCCCCCEEC
Confidence            999986 47899876  554


No 11 
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*
Probab=100.00  E-value=9.9e-47  Score=349.22  Aligned_cols=215  Identities=25%  Similarity=0.476  Sum_probs=122.1

Q ss_pred             hhhhccccChHH--HHHHHHcCCCCceEee-cCCCCCCCCHHHHHhhhCC-CCCCCCCCC-CCCcccccccCCCCCcccc
Q 023657           30 KLKLDSHILQDS--IIKEVNENPKAGWKAA-RNPQFSNYTVGQFKHLLGV-KPTPKGLLL-GVPVKTHDKSLKLPKSFDA  104 (279)
Q Consensus        30 ~~~~~~~i~~~~--~i~~~N~~~~~~~~~g-~n~~fsd~t~~ef~~~~~~-~~~~~~~~~-~~~~~~~~~~~~lP~~~D~  104 (279)
                      +...|+.||.++  +|++||++ +.+|+++ +| +|+|||.+||+++++. +........ ...........+||++|||
T Consensus       136 ~~~~R~~if~~N~~~I~~~N~~-~~~~~~~~~n-~faDlT~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~s~Dw  213 (441)
T 3pdf_A          136 QEKYSNRLYKYDHNFVKAINAI-QKSWTATTYM-EYETLTLGDMIRRSGGHSRKIPRPKPAPLTAEIQQKILFLPTSWDW  213 (441)
T ss_dssp             ------------------------------------------------------------------------CCCSCEET
T ss_pred             hHHHHHHHHHHHHHHHHHHHcc-CCceEeeccc-ccccCCHHHHHHHhCCCcccccccccCccccccccccccCCCCEEC
Confidence            446788999886  69999985 6799998 78 9999999999986553 222111100 0100111234589999999


Q ss_pred             ccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCc--cccchhhhhhhcCCCCCCCCCCCChHHH-HHHHHhh
Q 023657          105 RSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMN--LSLSVNDLLACCGFLCGDGCDGGYPISA-WRYFVHH  181 (279)
Q Consensus       105 R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~--~~lS~Q~lidC~~~~~~~gC~GG~~~~a-~~y~~~~  181 (279)
                      |++ .+++.|+||||||.||||||||++++||++++|+++..  +.||+|+|+||+.  .+.||+||++..+ ++|++++
T Consensus       214 R~~-~g~~~VtpVkdQG~CGSCWAFsa~~alE~~~~i~tg~~~~~~LSeQ~LvdC~~--~~~GC~GG~~~~aa~~yi~~~  290 (441)
T 3pdf_A          214 RNV-HGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQ--YAQGCEGGFPYLIAGKYAQDF  290 (441)
T ss_dssp             TCB-TTBCCSCCCCBCTTSBCHHHHHHHHHHHHHHHHHHTTSCCCCBCHHHHHHHCT--TSCTTBCCCHHHHTTHHHHHT
T ss_pred             CcC-CCCCccCcccccCCCchHHHHHHHHHHHHHHHHhccCCCccccCHHHHHhhcc--CCCCCCCCchhHHHHHHHHhc
Confidence            997 23457999999999999999999999999999999965  4599999999986  4789999999987 8999999


Q ss_pred             cccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-e-----CCCHHHHHHHHHhCCCeEEE
Q 023657          182 GVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-I-----NSDPEDIMAEIYKNGPVEVS  255 (279)
Q Consensus       182 G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~-----~~~~~~ik~~l~~~GPv~v~  255 (279)
                      |+++|+||||.+.+             +    .|.....    ...+.+..|. +     ..++++||++|+++|||+|+
T Consensus       291 Gi~tE~~yPY~~~~-------------~----~C~~~~~----~~~~~~~~y~~v~~~~~~~~e~~ik~al~~~GPVsva  349 (441)
T 3pdf_A          291 GLVEEACFPYTGTD-------------S----PCKMKED----CFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVA  349 (441)
T ss_dssp             CBCBGGGSCCCSSC-------------C----CSCCCSS----CCCBCEEEEEETTSSTTCCCHHHHHHHHHHHCCEEEE
T ss_pred             CCCcHHHeeecccC-------------C----CCCCccc----cceeeeccEEEeCCccCCCcHHHHHHHHHHCCCeEEE
Confidence            99999999997642             1    2221110    1112334454 3     25889999999999999999


Q ss_pred             EEecccCcCCc--cccc
Q 023657          256 FTVYEVKQTLT--LYSS  270 (279)
Q Consensus       256 i~v~~~F~~Y~--iY~~  270 (279)
                      |+|+++|++|+  ||.+
T Consensus       350 i~a~~~F~~Y~sGVy~~  366 (441)
T 3pdf_A          350 FEVYDDFLHYKKGIYHH  366 (441)
T ss_dssp             ECCCGGGGGCCSSEECC
T ss_pred             EEecccccccCCceEec
Confidence            99999999887  6654


No 12 
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1
Probab=100.00  E-value=4.9e-46  Score=331.59  Aligned_cols=213  Identities=22%  Similarity=0.374  Sum_probs=163.8

Q ss_pred             hhcccccc-cchhhhccccChHHH--HHHHHcCCCCceEeecCCCCCCCCHHHHHh-hhCCCCCCCCCCCCCCcccc---
Q 023657           20 SQTFAEGV-VSKLKLDSHILQDSI--IKEVNENPKAGWKAARNPQFSNYTVGQFKH-LLGVKPTPKGLLLGVPVKTH---   92 (279)
Q Consensus        20 ~~~~~~~~-~~~~~~~~~i~~~~~--i~~~N~~~~~~~~~g~n~~fsd~t~~ef~~-~~~~~~~~~~~~~~~~~~~~---   92 (279)
                      ..+.|.|. ..|...|+.||.+++  |++ |+    +   ++| +|+|||.+||++ +++............+....   
T Consensus        13 ~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~-N~----~---g~N-~F~Dlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (312)
T 1xkg_A           13 KAFNKSYATFEDEEAARKNFLESVKYVQS-NG----G---AIN-HLSDLSLDEFKNRFLMSAEAFEHLKTQFDLNAETNA   83 (312)
T ss_dssp             HHTTCCCSSHHHHHHHHHHHHHHHHHHHH-HC----C---CCC-TTTTSCHHHHHHHHSBCHHHHHHHHHHHC-----CB
T ss_pred             HHcCCCCCCHHHHHHHHHHHHHHHHHHHh-cc----C---CCC-cccCCCHHHHHHHhcCCCCccccccCCccccccccc
Confidence            34566775 467788999999964  666 53    2   999 999999999998 66632111000000000000   


Q ss_pred             -cccCCCCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCCh
Q 023657           93 -DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYP  171 (279)
Q Consensus        93 -~~~~~lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~  171 (279)
                       ....+||++||||++    |.|+||||||.||||||||++++||++++|+++..+.||+|+|+||+.   ..||+||++
T Consensus        84 ~~~~~~lP~~~DwR~~----g~vtpVkdQg~CGSCWAFsa~~alE~~~~i~~g~~~~LSeq~lvdC~~---~~GC~GG~~  156 (312)
T 1xkg_A           84 CSINGNAPAEIDLRQM----RTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCAS---QHGCHGDTI  156 (312)
T ss_dssp             CCCCSCCCSCEETTTT----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHTC---SSTTBCCCH
T ss_pred             ccccccCCCccccccC----CCcCCccccCCCCccHHHHHHHHHHHHHHHHhCCCCCcCHHHHHhccC---CCCCCCCCH
Confidence             112379999999998    779999999999999999999999999999999999999999999983   389999999


Q ss_pred             HHHHHHHHhhcccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eC-CCHHHHHHHHHh-
Q 023657          172 ISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYK-  248 (279)
Q Consensus       172 ~~a~~y~~~~G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~-~~~~~ik~~l~~-  248 (279)
                      ..||+|+.+.|+++|++|||.+..             +    .|. ..    ....+.+.+|. ++ .++++||++|++ 
T Consensus       157 ~~a~~yi~~~Gi~~e~~yPY~~~~-------------~----~C~-~~----~~~~~~i~~y~~v~~~~~~~ik~al~~~  214 (312)
T 1xkg_A          157 PRGIEYIQHNGVVQESYYRYVARE-------------Q----SCR-RP----NAQRFGISNYCQIYPPNANKIREALAQT  214 (312)
T ss_dssp             HHHHHHHHHHCEEBGGGSCCCSSC-------------C----CCC-CC----SSCEECCSEEEECCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCccccCCccCCC-------------C----CCC-CC----CCceEEEeeEEEeCCCCHHHHHHHHHhc
Confidence            999999999999999999997641             2    333 11    12346677886 65 589999999999 


Q ss_pred             CCCeEEEEEecc--cCcCCc--cccc
Q 023657          249 NGPVEVSFTVYE--VKQTLT--LYSS  270 (279)
Q Consensus       249 ~GPv~v~i~v~~--~F~~Y~--iY~~  270 (279)
                      +|||+|+|++++  +|+.|+  ||.+
T Consensus       215 ~GPV~v~i~~~~~~~f~~Y~~GVy~~  240 (312)
T 1xkg_A          215 HSAIAVIIGIKDLDAFRHYDGRTIIQ  240 (312)
T ss_dssp             CCCEEEEEEESCHHHHHTCCSSSCBC
T ss_pred             CCCEEEEEEecccccccccCCcEEcC
Confidence            999999999997  899876  4443


No 13 
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ...
Probab=100.00  E-value=3.5e-42  Score=301.41  Aligned_cols=173  Identities=51%  Similarity=1.051  Sum_probs=139.8

Q ss_pred             CCCCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhC--CccccchhhhhhhcCCCCCCCCCCCChHH
Q 023657           96 LKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLLACCGFLCGDGCDGGYPIS  173 (279)
Q Consensus        96 ~~lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~--~~~~lS~Q~lidC~~~~~~~gC~GG~~~~  173 (279)
                      .+||++||||++|++|+.|+||||||.||||||||++++||++++|+++  ..+.||+|||+||+....+.||+||++..
T Consensus         5 ~~lP~~~D~R~~w~~~~~vt~VkdQg~CGSCWAfa~~~ale~~~~i~~~~~~~~~LS~q~lvdC~~~~~~~gC~GG~~~~   84 (266)
T 3cbj_A            5 LKLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAE   84 (266)
T ss_dssp             CCCCSCEEHHHHSTTCGGGGCCCBCCSSBCHHHHHHHHHHHHHHHHHTTTSCCCCBCHHHHHHHCGGGGBCTTBCBCHHH
T ss_pred             CCCCccCcchhccCCCCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHhCCCCccccCHHHHHhhccccCCCCCCCCCHHH
Confidence            5799999999999999999999999999999999999999999999876  47999999999998521468999999999


Q ss_pred             HHHHHHhhcccc-------cccccCCCCCCCC------CCCCCCCCCCccccccccccccc-ccccceEEeeeEEeCCCH
Q 023657          174 AWRYFVHHGVVT-------EECDPYFDSTGCS------HPGCEPAYPTPKCVRKCVKKNQL-WRNSKHYSISAYRINSDP  239 (279)
Q Consensus       174 a~~y~~~~G~~~-------e~~yPY~~~~~c~------~~~c~~~~~~~~c~~~C~~~~~~-~~~~~~~~~~~~~~~~~~  239 (279)
                      ||+|++++|+++       |+||||... .|.      ...|.....+|.|...|...... +.....+.+..|.++.++
T Consensus        85 a~~y~~~~Gi~~~~~Y~~~e~~~PY~~~-~~~~~~~~~~~~C~~~~~~p~c~~~c~~~~~~~~~~~~~~~~~~~~v~~~~  163 (266)
T 3cbj_A           85 AWNFWTRKGLVSGGLYESHVGCRPYSIP-PCEAHVNGARPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSE  163 (266)
T ss_dssp             HHHHHHHTCBCBCCSTTCCCSSSCCCSC-CCSCCCSCSSCCCCSCCCCCCCCCSCCTTCCSCTGGGCBCBSCCEECCSCH
T ss_pred             HHHHHHHhCcCcCccccccccccCcccc-cccccccCCCCCCccccCCCccccccCCCCcceeeeeeeeeeeeEEeCCCH
Confidence            999999999999       999999632 121      24565444567777777543211 112233444556677789


Q ss_pred             HHHHHHHHhCCCeEEEEEecccCcCCc--ccc
Q 023657          240 EDIMAEIYKNGPVEVSFTVYEVKQTLT--LYS  269 (279)
Q Consensus       240 ~~ik~~l~~~GPv~v~i~v~~~F~~Y~--iY~  269 (279)
                      ++||++|+++|||+|+|.++++|+.|+  ||.
T Consensus       164 ~~i~~~i~~~GPV~v~i~~~~~f~~Y~~Gvy~  195 (266)
T 3cbj_A          164 KDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQ  195 (266)
T ss_dssp             HHHHHHHHHHCCEEEEEEEEGGGGGCCSSEEC
T ss_pred             HHHHHHHHhcCCEEEEEEeccchhhcCCeEEe
Confidence            999999999999999999998999876  444


No 14 
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A*
Probab=100.00  E-value=1.2e-41  Score=296.24  Aligned_cols=168  Identities=48%  Similarity=0.955  Sum_probs=136.2

Q ss_pred             CCCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhC--CccccchhhhhhhcCCCCCCCCCCCChHHH
Q 023657           97 KLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLLACCGFLCGDGCDGGYPISA  174 (279)
Q Consensus        97 ~lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~--~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a  174 (279)
                      +||++||||++|++|+.|+||||||.||||||||++++||++++|+++  ..+.||+|+|+||+. ..+.||+||++..|
T Consensus         2 ~lP~s~D~R~~~~~~~~vtpVkdQg~CGSCWAFaa~~ale~~~~i~~~~~~~~~LSeQ~lvdC~~-~~~~GC~GG~~~~a   80 (254)
T 3qsd_A            2 EIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLLSCCE-SCGLGCEGGILGPA   80 (254)
T ss_dssp             CCCSCEEHHHHCTTCGGGGCCCBCCSSBCHHHHHHHHHHHHHHHHHTTTCCCCCBCHHHHHHHCT-TSBCTTBCBCHHHH
T ss_pred             CCCCcCccccccCCCCccCCCCCcccCccHHHHHHHHHHHHHHHHHhCCCccccCCHHHHHhhhc-CCCCCCCCCCHHHH
Confidence            699999999999999999999999999999999999999999999987  789999999999986 45689999999999


Q ss_pred             HHHHHhhcccccccc-------cCCCCCCCC------CCCCCCC-CCCccccccccccccc-ccccceEEeeeEEeCCCH
Q 023657          175 WRYFVHHGVVTEECD-------PYFDSTGCS------HPGCEPA-YPTPKCVRKCVKKNQL-WRNSKHYSISAYRINSDP  239 (279)
Q Consensus       175 ~~y~~~~G~~~e~~y-------PY~~~~~c~------~~~c~~~-~~~~~c~~~C~~~~~~-~~~~~~~~~~~~~~~~~~  239 (279)
                      |+|++++|+++|+.|       ||... .|.      ..+|... ..++.|...|...... +.....+....|.+..++
T Consensus        81 ~~yi~~~Gi~~e~~y~~~~~c~PY~~~-~c~~~~~~~~~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  159 (254)
T 3qsd_A           81 WDYWVKEGIVTGSSKENHAGCEPYPFP-KCEHHTKGKYPPCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDE  159 (254)
T ss_dssp             HHHHHHTCBCBCCCTTTCCSSSCCSSC-CCBCSSCSSSCBCCSCCCCCCCCCCCCCTTCCSCGGGGCBCCSEEEECCSCH
T ss_pred             HHHHHHcCCCcccccccCcCcCCcccc-cccccccCcCCCCcccccCCccccccccCCccceeeeeeeeeeeeEecCCcH
Confidence            999999999998877       99632 121      1344321 2356677777754321 222233444456677789


Q ss_pred             HHHHHHHHhCCCeEEEEEecccCcCCc
Q 023657          240 EDIMAEIYKNGPVEVSFTVYEVKQTLT  266 (279)
Q Consensus       240 ~~ik~~l~~~GPv~v~i~v~~~F~~Y~  266 (279)
                      ++||++|+++|||+|+|.++++|+.|+
T Consensus       160 ~~i~~~l~~~gPv~~~~~~~~~f~~y~  186 (254)
T 3qsd_A          160 KAIQKEIMKYGPVEAGFTVYEDFLNYK  186 (254)
T ss_dssp             HHHHHHHHHHCCEEEEEEEEGGGGGCC
T ss_pred             HHHHHHHHHcCCEEEEEEecccccccc
Confidence            999999999999999999998999876


No 15 
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ...
Probab=100.00  E-value=1e-39  Score=278.27  Aligned_cols=148  Identities=28%  Similarity=0.518  Sum_probs=124.9

Q ss_pred             CCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHHHHHH
Q 023657           98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRY  177 (279)
Q Consensus        98 lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~y  177 (279)
                      ||++||||++    +.++||||||.||||||||++++||++++|+++..+.||+|+|+||+....+.||+||++..|++|
T Consensus         1 lP~~~DwR~~----~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~g~~gC~GG~~~~a~~y   76 (220)
T 2xu3_A            1 APRSVDWREK----GYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQY   76 (220)
T ss_dssp             CCSCEEGGGG----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTTTCCTTBCCCHHHHHHH
T ss_pred             CCCcEeCCCC----CCCCCCcccCcccHHHHHHhHHHHHHHHHHhcCCceecCHHHHHhhccCCCCCCCCCCCHHHHHHH
Confidence            7999999998    779999999999999999999999999999999999999999999986323689999999999999


Q ss_pred             HH-hhcccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eCCCHHHHHHHHHhCCCeEEE
Q 023657          178 FV-HHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGPVEVS  255 (279)
Q Consensus       178 ~~-~~G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~ik~~l~~~GPv~v~  255 (279)
                      +. ++|+++|++|||.+..                 ..|....    ....+++..|. ++.++++||++|+++|||+|+
T Consensus        77 ~~~~~Gi~~e~~yPY~~~~-----------------~~C~~~~----~~~~~~i~~~~~v~~~~~~ik~~l~~~GPV~v~  135 (220)
T 2xu3_A           77 VQDNGGLDSEESYPYEATE-----------------ESCKYNP----KYSVANDTGFVDIPKQEKALMKAVATVGPISVA  135 (220)
T ss_dssp             HHHHTCEEBTTTSCCCSSC-----------------CCCCCCG----GGEEECCSEEEECCSCHHHHHHHHHHTCCEEEE
T ss_pred             HHHhCCcccccccCCcccC-----------------cCccCCC----CCcceeeeeEEEeCCCHHHHHHHHHhcCCEEEE
Confidence            96 6799999999996541                 1333221    12345667777 666899999999999999999


Q ss_pred             EEec-ccCcCCc--cccc
Q 023657          256 FTVY-EVKQTLT--LYSS  270 (279)
Q Consensus       256 i~v~-~~F~~Y~--iY~~  270 (279)
                      |.++ ++|+.|+  ||.+
T Consensus       136 ~~~~~~~f~~Y~~Gvy~~  153 (220)
T 2xu3_A          136 IDAGHESFLFYKEGIYFE  153 (220)
T ss_dssp             ECCCSHHHHTCCSSEECC
T ss_pred             EeecCcccccccceEEcC
Confidence            9998 5899877  5543


No 16 
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ...
Probab=100.00  E-value=1.7e-39  Score=276.01  Aligned_cols=146  Identities=31%  Similarity=0.616  Sum_probs=124.7

Q ss_pred             CCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHHHHHH
Q 023657           98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRY  177 (279)
Q Consensus        98 lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~y  177 (279)
                      ||++||||++    +.|+||||||.||||||||+++++|++++++++..+.||+|+|+||+.  .+.||+||++..|++|
T Consensus         1 lP~~~Dwr~~----~~v~pvkdQg~cGsCWAfa~~~~~e~~~~~~~~~~~~lS~q~l~dc~~--~~~gC~GG~~~~a~~~   74 (215)
T 3kwz_A            1 APDSVDYRKK----GYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS--ENDGCGGGYMTNAFQY   74 (215)
T ss_dssp             CTTCEETTTT----TCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT--TSCTTBCCCHHHHHHH
T ss_pred             CCCCCccCcC----CCCCCcccCCCCcHHHHHHHHHHHHHHHHHHcCCCcccCHHHHHHhcC--CCCCCCCCCHHHHHHH
Confidence            7999999998    779999999999999999999999999999999999999999999986  5789999999999999


Q ss_pred             HHhh-cccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eC-CCHHHHHHHHHhCCCeEE
Q 023657          178 FVHH-GVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYKNGPVEV  254 (279)
Q Consensus       178 ~~~~-G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~-~~~~~ik~~l~~~GPv~v  254 (279)
                      ++++ |+++|++|||.+.+                 ..|....    .....++..|. ++ .++++||++|+++|||++
T Consensus        75 ~~~~~Gi~~e~~yPY~~~~-----------------~~C~~~~----~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v  133 (215)
T 3kwz_A           75 VQKNRGIDSEDAYPYVGQE-----------------ESCMYNP----TGKAAKCRGYREIPEGNEKALKRAVARVGPVSV  133 (215)
T ss_dssp             HHHHTCEEBTTTSCCCSSC-----------------CCCCCCG----GGEEECCCCEEECCTTCHHHHHHHHHHTCCEEE
T ss_pred             HHHhCCccccccCCCccCC-----------------CccccCC----CCceeEecceEEeCCCCHHHHHHHHHHCCCEEE
Confidence            9988 99999999997541                 1333222    12345566777 65 488999999999999999


Q ss_pred             EEEec-ccCcCCc--cccc
Q 023657          255 SFTVY-EVKQTLT--LYSS  270 (279)
Q Consensus       255 ~i~v~-~~F~~Y~--iY~~  270 (279)
                      +|+++ ++|+.|+  ||..
T Consensus       134 ~~~~~~~~f~~y~~Giy~~  152 (215)
T 3kwz_A          134 AIDASLTSFQFYSKGVYYD  152 (215)
T ss_dssp             EECCCSHHHHTCCSSEECC
T ss_pred             EEeechhhhhcccCCeECC
Confidence            99998 6899877  5543


No 17 
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1
Probab=100.00  E-value=1.3e-39  Score=276.19  Aligned_cols=147  Identities=27%  Similarity=0.504  Sum_probs=122.2

Q ss_pred             CCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHHHHHH
Q 023657           98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRY  177 (279)
Q Consensus        98 lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~y  177 (279)
                      ||++||||++    |.++||||||.||||||||+++++|++++|+++..+.||+|+|+||+.  .+.||+||++..|++|
T Consensus         1 lP~~~DwR~~----~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~--~~~gC~GG~~~~a~~~   74 (213)
T 3ioq_A            1 IPTSIDWRQK----GAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCER--RSYGCRGGFPLYALQY   74 (213)
T ss_dssp             CCSCEEGGGG----TCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT--TSCTTBCCCHHHHHHH
T ss_pred             CCCCCCcccC----CCCCCCCcCCCChhHHHHHHHHHHHHHHHHHcCCCcccCHHHhhhhcC--CCCCCCCCCHHHHHHH
Confidence            7999999998    789999999999999999999999999999999999999999999986  5789999999999999


Q ss_pred             HHhhcccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eCCCHHHHHHHHHhCCCeEEEE
Q 023657          178 FVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGPVEVSF  256 (279)
Q Consensus       178 ~~~~G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~ik~~l~~~GPv~v~i  256 (279)
                      ++++|+++|++|||.+.             .+.|...+..       ...+++..|. ++.++++++++++.+|||+++|
T Consensus        75 ~~~~Gi~~e~~yPY~~~-------------~~~C~~~~~~-------~~~~~i~~~~~v~~~~~~~~~~~~~~GPV~v~i  134 (213)
T 3ioq_A           75 VANSGIHLRQYYPYEGV-------------QRQCRASQAK-------GPKVKTDGVGRVPRNNEQALIQRIAIQPVSIVV  134 (213)
T ss_dssp             HHHHCEEBGGGSCCCSS-------------CCCCCGGGCC-------SCEECCCEEEECCSSCHHHHHHHHTTSCEEEEE
T ss_pred             HHHcCCCchhccCcCCC-------------CCCCCCCccC-------CceEEeccEEEeCCchHHHHHHHHHhCCEEEEE
Confidence            99999999999999654             1223322211       2345667777 6654455566666889999999


Q ss_pred             Eec-ccCcCCc--cccc
Q 023657          257 TVY-EVKQTLT--LYSS  270 (279)
Q Consensus       257 ~v~-~~F~~Y~--iY~~  270 (279)
                      +++ ++|+.|+  ||.+
T Consensus       135 ~~~~~~f~~y~~Giy~~  151 (213)
T 3ioq_A          135 EAKGRAFQNYRGGIFAG  151 (213)
T ss_dssp             CCCSHHHHTCCSSEECC
T ss_pred             EechhhhhhccCCeEcC
Confidence            998 7899877  5543


No 18 
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ...
Probab=100.00  E-value=2.8e-39  Score=274.54  Aligned_cols=147  Identities=29%  Similarity=0.527  Sum_probs=122.7

Q ss_pred             CCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHHHHHH
Q 023657           98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRY  177 (279)
Q Consensus        98 lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~y  177 (279)
                      ||++||||++    |.|+||||||.||||||||++++||++++|+++..+.||+|+|+||+.  .+.||+||++..||+|
T Consensus         1 lP~~~Dwr~~----g~vtpVkdQg~cGsCWAfa~~~ale~~~~i~~~~~~~lS~q~l~dC~~--~~~gC~GG~~~~a~~y   74 (215)
T 3i06_A            1 APAAVDWRAR----GAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDK--TDSGCSGGLMNNAFEW   74 (215)
T ss_dssp             CCSEEEGGGG----TCCCCCCBCCSSCCHHHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHCS--SSCGGGCCCHHHHHHH
T ss_pred             CCCcccCCcC----CCCCCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHhccCC--CCCCCCCCCHHHHHHH
Confidence            7999999998    789999999999999999999999999999999999999999999986  4789999999999999


Q ss_pred             HHhh---cccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eCCCHHHHHHHHHhCCCeE
Q 023657          178 FVHH---GVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGPVE  253 (279)
Q Consensus       178 ~~~~---G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~ik~~l~~~GPv~  253 (279)
                      ++++   |+++|++|||....+          ..+    .|....    ....+++..|. ++.++++||++|+++|||+
T Consensus        75 ~~~~~~gGi~~e~~yPY~~~~~----------~~~----~C~~~~----~~~~~~i~~~~~v~~~~~~ik~~l~~~gPV~  136 (215)
T 3i06_A           75 IVQENNGAVYTEDSYPYASGEG----------ISP----PCTTSG----HTVGATITGHVELPQDEAQIAAWLAVNGPVA  136 (215)
T ss_dssp             HHHHSTTEEEC-CCSCCCCTTS----------CCC----CCCCSS----CCEEEEEEEEEECCSCHHHHHHHHHHHCCEE
T ss_pred             HHHhccccccccCccCCcCCCC----------CCC----ccccCC----cccceEecceEEeCChHHHHHHHHHHCCCEE
Confidence            9986   799999999965311          112    233222    12335667776 7778999999999999999


Q ss_pred             EEEEecccCcCCc--ccc
Q 023657          254 VSFTVYEVKQTLT--LYS  269 (279)
Q Consensus       254 v~i~v~~~F~~Y~--iY~  269 (279)
                      ++|++ ++|++|+  ||+
T Consensus       137 v~~~~-~~f~~Y~~Giy~  153 (215)
T 3i06_A          137 VAVDA-SSWMTYTGGVMT  153 (215)
T ss_dssp             EEECC-TTGGGCCSSEEC
T ss_pred             EEEEc-hHHhcCCCCccc
Confidence            99999 6898876  554


No 19 
>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ...
Probab=100.00  E-value=4.8e-39  Score=272.54  Aligned_cols=145  Identities=26%  Similarity=0.455  Sum_probs=121.7

Q ss_pred             CCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHHHHHH
Q 023657           98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRY  177 (279)
Q Consensus        98 lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~y  177 (279)
                      ||++||||++    +.|+||||||.||||||||++++||++++|+++..+.||+|+|+||+.  .+.||+||++..|++|
T Consensus         1 lP~~~DwR~~----~~v~pVkdQg~CGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~--~~~gC~GG~~~~a~~y   74 (212)
T 2cio_A            1 IPEYVDWRQK----GAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDR--RSYGCNGGYPWSALQL   74 (212)
T ss_dssp             CCSCEETTTT----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT--TSCTTBCCCHHHHHHH
T ss_pred             CCCcccCCCC----CCCCCCccCCccchHHHHHHHHHHHHHHHHhcCCccccCHHHHHHhCC--CCCCCCCCCHHHHHHH
Confidence            7999999998    779999999999999999999999999999999999999999999985  4689999999999999


Q ss_pred             HHhhcccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eC-CCHHHHHHHHHhCCCeEEE
Q 023657          178 FVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYKNGPVEVS  255 (279)
Q Consensus       178 ~~~~G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~-~~~~~ik~~l~~~GPv~v~  255 (279)
                      ++++|+++|++|||.+..             +.|...+..       ...+.+..|. ++ .++++||++|++ |||+|+
T Consensus        75 i~~~Gi~~e~~yPY~~~~-------------~~C~~~~~~-------~~~~~i~~~~~v~~~~~~~i~~~l~~-GPV~v~  133 (212)
T 2cio_A           75 VAQYGIHYRNTYPYEGVQ-------------RYCRSREKG-------PYAAKTDGVRQVQPYNEGALLYSIAN-QPVSVV  133 (212)
T ss_dssp             HHHTCBCBTTTSCCCSSC-------------CCCCTTTTC-------SCSBCCSEEEECCSSCHHHHHHHHHH-SCEEEE
T ss_pred             HHHhCcCcccccCCcCCC-------------CCcCCCCCC-------CceEEEeeEEEeCCccHHHHHHHHHh-CCEEEE
Confidence            999999999999997541             222222211       2234566776 65 478899999976 999999


Q ss_pred             EEecc-cCcCCc--ccc
Q 023657          256 FTVYE-VKQTLT--LYS  269 (279)
Q Consensus       256 i~v~~-~F~~Y~--iY~  269 (279)
                      |.++. +|+.|+  ||.
T Consensus       134 i~~~~~~f~~Y~~Gvy~  150 (212)
T 2cio_A          134 LEAAGKDFQLYRGGIFV  150 (212)
T ss_dssp             ECCCSHHHHTCCSSEEC
T ss_pred             EeccCcchhhcCCceec
Confidence            99985 899876  554


No 20 
>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana}
Probab=100.00  E-value=6.3e-39  Score=272.09  Aligned_cols=142  Identities=32%  Similarity=0.545  Sum_probs=121.0

Q ss_pred             CCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHHHHHH
Q 023657           98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRY  177 (279)
Q Consensus        98 lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~y  177 (279)
                      ||++||||++    +.|+||||||.||||||||++++||++++|+++..+.||+|+|+||+.  .+.||+||++..|++|
T Consensus         1 lP~~~DwR~~----~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~--~~~gC~GG~~~~a~~y   74 (214)
T 2bdz_A            1 YPESIDWREK----GAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCER--RSHGCDGGYQTTSLQY   74 (214)
T ss_dssp             CCSCEETTTT----TCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCBCCBCHHHHHHHCT--TSCTTBCCCHHHHHHH
T ss_pred             CCCcEeCCCC----CCCCCCccCCCCccHHHHHhHHHHHHHHHHhcCCccccCHHHHHhhcC--CCCCCCCCCHHHHHHH
Confidence            7999999998    779999999999999999999999999999999999999999999985  4689999999999999


Q ss_pred             HHhhcccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eC-CCHHHHHHHHHhCCCeEEE
Q 023657          178 FVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYKNGPVEVS  255 (279)
Q Consensus       178 ~~~~G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~-~~~~~ik~~l~~~GPv~v~  255 (279)
                      ++++|+++|++|||.+..             +.|...+..       ...+.+..|. ++ .++++||++|++ |||+|+
T Consensus        75 ~~~~Gi~~e~~yPY~~~~-------------~~C~~~~~~-------~~~~~i~~y~~v~~~~~~~i~~~l~~-gPV~v~  133 (214)
T 2bdz_A           75 VVDNGVHTEREYPYEKKQ-------------GRCRAKDKK-------GPKVYITGYKYVPANDEISLIQAIAN-QPVSVV  133 (214)
T ss_dssp             HHHHCEEBTTTSCCCSSC-------------CCCCTTTCC-------SCEECCCEEEEECSSBHHHHHHHHHH-SCEEEE
T ss_pred             HHHhCCCccccCCCCCCC-------------CCCCCCCCC-------CceeeecCEEEeCCCcHHHHHHHHHh-CCEEEE
Confidence            999999999999997541             122221110       2345667777 65 478899999986 999999


Q ss_pred             EEec-ccCcCCc
Q 023657          256 FTVY-EVKQTLT  266 (279)
Q Consensus       256 i~v~-~~F~~Y~  266 (279)
                      |.++ ++|+.|+
T Consensus       134 i~~~~~~f~~Y~  145 (214)
T 2bdz_A          134 TDSRGRGFQFYK  145 (214)
T ss_dssp             ECCCSHHHHTCC
T ss_pred             EeeChhHhhccc
Confidence            9998 6899876


No 21 
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1
Probab=100.00  E-value=3.1e-39  Score=274.13  Aligned_cols=141  Identities=28%  Similarity=0.527  Sum_probs=118.8

Q ss_pred             CCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHHHHHH
Q 023657           98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRY  177 (279)
Q Consensus        98 lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~y  177 (279)
                      ||++||||++    +.|+||||||.||||||||++++||++++|+++..+.||+|+|+||+.  .+.||+||++..|++|
T Consensus         1 lP~~~DwR~~----~~vt~VkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~--~~~gC~GG~~~~a~~~   74 (214)
T 1m6d_A            1 APPEWDWRSK----GAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDK--MDKACMGGLPSNAYSA   74 (214)
T ss_dssp             CCSCEEGGGG----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCS--SSCTTBCCCHHHHHHH
T ss_pred             CCCcCcCCCC----CCCCCCccCCCCchHHHHHHHHHHHHHHHHHcCCCcccCHHHHHHhcC--CCCCCCCCCHHHHHHH
Confidence            7999999998    779999999999999999999999999999999999999999999986  4689999999999999


Q ss_pred             HHhh-cccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eCCCHHHHHHHHHhCCCeEEE
Q 023657          178 FVHH-GVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGPVEVS  255 (279)
Q Consensus       178 ~~~~-G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~ik~~l~~~GPv~v~  255 (279)
                      ++++ |+++|++|||.+..                 ..|.....    ...+.+..+. ++.++++||++|+++|||+|+
T Consensus        75 i~~~~Gi~~e~~yPY~~~~-----------------~~C~~~~~----~~~~~i~~~~~i~~~~~~ik~~l~~~GPV~v~  133 (214)
T 1m6d_A           75 IKNLGGLETEDDYSYQGHM-----------------QSCQFSAE----KAKVYIQDSVELSQNEQKLAAWLAKRGPISVA  133 (214)
T ss_dssp             HHHHTCBCBTTTSCCCSSC-----------------CCCCCCGG----GCCBCCSEEEECCSCHHHHHHHHHHHCCEEEE
T ss_pred             HHHhcCcccccCcCcCCCC-----------------CcCCCCcc----cceEEecCEEEeChHHHHHHHHHHhCCCEEEE
Confidence            9987 89999999997541                 12332211    1123445555 777889999999999999999


Q ss_pred             EEecccCcCCc
Q 023657          256 FTVYEVKQTLT  266 (279)
Q Consensus       256 i~v~~~F~~Y~  266 (279)
                      |+++ +|++|+
T Consensus       134 i~~~-~f~~Y~  143 (214)
T 1m6d_A          134 INAF-GMQFYR  143 (214)
T ss_dssp             ECTH-HHHHCC
T ss_pred             EEec-hhhhcC
Confidence            9987 577655


No 22 
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A*
Probab=100.00  E-value=3e-39  Score=275.39  Aligned_cols=148  Identities=30%  Similarity=0.550  Sum_probs=125.7

Q ss_pred             CCCccccccCCCCCC-cccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHHHHH
Q 023657           98 LPKSFDARSAWPQCS-TISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWR  176 (279)
Q Consensus        98 lP~~~D~R~~~~~~~-~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~  176 (279)
                      ||++||||++    + .|+||||||.||||||||++++||++++|+++..+.||+|+|+||+....+.||+||++..|++
T Consensus         1 lP~~~DwR~~----~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dc~~~~~~~gC~GG~~~~a~~   76 (220)
T 8pch_A            1 YPPSMDWRKK----GNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFE   76 (220)
T ss_dssp             CCSCEEHHHH----SSCSCCCCBCTTSCCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHGGGGTCCGGGCCCHHHHHH
T ss_pred             CCCCEecCcC----CCcCCcccccCCCchHHHHHHHHHHHHHHHHHcCCCCCCCHHHHhhCcCccCCCCCCCCCHHHHHH
Confidence            7999999998    5 6999999999999999999999999999999999999999999998633468999999999999


Q ss_pred             HHHhh-cccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eC-CCHHHHHHHHHhCCCeE
Q 023657          177 YFVHH-GVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYKNGPVE  253 (279)
Q Consensus       177 y~~~~-G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~-~~~~~ik~~l~~~GPv~  253 (279)
                      |++++ |+++|++|||.+..                 ..|....    ......+..|. ++ .++++||++|+++|||+
T Consensus        77 ~~~~~~Gi~~e~~yPY~~~~-----------------~~C~~~~----~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~  135 (220)
T 8pch_A           77 YIRYNKGIMGEDTYPYKGQD-----------------DHCKFQP----DKAIAFVKDVANITMNDEEAMVEAVALYNPVS  135 (220)
T ss_dssp             HHHHHTCEEBTTTSCCCSSC-----------------CCCCCCG----GGEEECEEEEEECCTTCHHHHHHHHHHTCCEE
T ss_pred             HHHHcCCcCcccccCccCCC-----------------CCCCCCC----CcceEEeCCEEEeCCCCHHHHHHHHHhcCCEE
Confidence            99998 99999999996541                 1333222    12345566776 54 58899999999999999


Q ss_pred             EEEEecccCcCCc--cccc
Q 023657          254 VSFTVYEVKQTLT--LYSS  270 (279)
Q Consensus       254 v~i~v~~~F~~Y~--iY~~  270 (279)
                      ++|.++++|+.|+  ||.+
T Consensus       136 ~~~~~~~~f~~Y~~Giy~~  154 (220)
T 8pch_A          136 FAFEVTNDFLMYRKGIYSS  154 (220)
T ss_dssp             EEECCCHHHHTCCSSEECC
T ss_pred             EEEEeccchhhcCCCcccC
Confidence            9999998999887  5544


No 23 
>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A*
Probab=100.00  E-value=6.2e-39  Score=272.60  Aligned_cols=142  Identities=30%  Similarity=0.507  Sum_probs=120.8

Q ss_pred             CCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHHHHHH
Q 023657           98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRY  177 (279)
Q Consensus        98 lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~y  177 (279)
                      ||++||||++    +.++||||||.||||||||++++||++++|+++..+.||+|+|+||+.  .+.||+||++..|++|
T Consensus         1 lP~~~DwR~~----~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~--~~~gC~GG~~~~a~~y   74 (216)
T 1ppo_A            1 LPENVDWRKK----GAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCER--RSHGCKGGYPPYALEY   74 (216)
T ss_dssp             CCSCEETTTT----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCS--SSCTTBCCCHHHHHHH
T ss_pred             CCCcCcCCCC----CCCCCCccCCcCccHHHHHHHHHHHHHHHHccCCceecCHHHHHhccC--CCCCCCCCCHHHHHHH
Confidence            7999999998    779999999999999999999999999999999999999999999985  4689999999999999


Q ss_pred             HHhhcccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eC-CCHHHHHHHHHhCCCeEEE
Q 023657          178 FVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYKNGPVEVS  255 (279)
Q Consensus       178 ~~~~G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~-~~~~~ik~~l~~~GPv~v~  255 (279)
                      ++++|+++|++|||.+..             +.|...+..       ...+++..|. ++ .++++||++|++ |||+|+
T Consensus        75 i~~~Gi~~e~~yPY~~~~-------------~~C~~~~~~-------~~~~~i~~y~~v~~~~~~~i~~~l~~-GPV~v~  133 (216)
T 1ppo_A           75 VAKNGIHLRSKYPYKAKQ-------------GTCRAKQVG-------GPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVV  133 (216)
T ss_dssp             HHHHCBCBTTTSCCCSSC-------------CCCCGGGCC-------SCCBCCCEEEECCSSCHHHHHHHHHH-SCEEEE
T ss_pred             HHHhCcCccccCCccCCC-------------CCcCCCCCC-------CceEEeccEEEECCCCHHHHHHHHHh-CCEEEE
Confidence            999999999999997541             223222110       2345667777 65 488999999986 999999


Q ss_pred             EEec-ccCcCCc
Q 023657          256 FTVY-EVKQTLT  266 (279)
Q Consensus       256 i~v~-~~F~~Y~  266 (279)
                      |.++ ++|+.|+
T Consensus       134 ~~~~~~~f~~Y~  145 (216)
T 1ppo_A          134 VESKGRPFQLYK  145 (216)
T ss_dssp             ECCCSHHHHHCC
T ss_pred             EecCChhhhhcC
Confidence            9996 7899876


No 24 
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*
Probab=100.00  E-value=8.4e-39  Score=270.18  Aligned_cols=142  Identities=29%  Similarity=0.536  Sum_probs=121.0

Q ss_pred             CCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHHHHHH
Q 023657           98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRY  177 (279)
Q Consensus        98 lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~y  177 (279)
                      ||++||||++    +.++||||||.||||||||++++||++++|+++..+.||+|+|+||+.  .+.||+||++..|++|
T Consensus         1 lP~~~DwR~~----~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~--~~~gC~GG~~~~a~~y   74 (208)
T 1o0e_A            1 LPEQIDWRKK----GAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDK--KNHGCLGGAFVFAYQY   74 (208)
T ss_dssp             CCSCEEGGGG----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT--TSCTTBCCCHHHHHHH
T ss_pred             CCCcCcCCCC----CCCCCCccCCCCccHHHHHHHHHHHHHHHHhcCCceecCHHHhhhhcC--CCCCCCCCCHHHHHHH
Confidence            7999999998    779999999999999999999999999999999999999999999985  4689999999999999


Q ss_pred             HHhh-cccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eC-CCHHHHHHHHHhCCCeEE
Q 023657          178 FVHH-GVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYKNGPVEV  254 (279)
Q Consensus       178 ~~~~-G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~-~~~~~ik~~l~~~GPv~v  254 (279)
                      ++++ |+++|++|||.+.+             +    .|.. .     ...+.+..|. ++ .++++||++|++ |||+|
T Consensus        75 ~~~~~Gi~~e~~yPY~~~~-------------~----~C~~-~-----~~~~~i~~~~~v~~~~~~~i~~~l~~-GPV~v  130 (208)
T 1o0e_A           75 IINNGGIDTQANYPYKAVQ-------------G----PCQA-A-----SKVVSIDGYNGVPFCNEXALKQAVAV-QPSTV  130 (208)
T ss_dssp             HHHHTCBCBTTTSCCCSSC-------------C----CCCC-C-----CCCBCCCEEEECCTTCHHHHHHHHHH-SCEEE
T ss_pred             HHHhCCcCcccccCccCCC-------------C----cCCC-C-----CceEEeCeEEEeCCCCHHHHHHHHHh-CCEEE
Confidence            9998 99999999996541             2    3332 1     2234566776 65 478899999976 99999


Q ss_pred             EEEecc-cCcCCc--ccc
Q 023657          255 SFTVYE-VKQTLT--LYS  269 (279)
Q Consensus       255 ~i~v~~-~F~~Y~--iY~  269 (279)
                      +|.++. +|+.|+  ||+
T Consensus       131 ~i~~~~~~f~~Y~~Gvy~  148 (208)
T 1o0e_A          131 AIDASSAQFQQYSSGIFS  148 (208)
T ss_dssp             EECCCSHHHHTCCSSEEC
T ss_pred             EEEccCcccccccCceEC
Confidence            999975 899876  544


No 25 
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1
Probab=100.00  E-value=1.3e-38  Score=270.32  Aligned_cols=140  Identities=29%  Similarity=0.548  Sum_probs=119.6

Q ss_pred             CCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHHHHHH
Q 023657           98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRY  177 (279)
Q Consensus        98 lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~y  177 (279)
                      ||++||||++    +.|+||||||.||||||||+++++|++++|+++..+.||+|+|+||+.  .+.||+||++..|++|
T Consensus         1 lP~~~DwR~~----~~v~~VkdQg~cGsCWAfa~~~~~e~~~~i~~g~~~~lS~q~l~dC~~--~~~gC~GG~~~~a~~~   74 (215)
T 1iwd_A            1 LPSFVDWRSK----GAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDT--ASHGCNGGWMNNAFQY   74 (215)
T ss_dssp             CCSCEEGGGG----TCSCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT--TSCTTBCCCHHHHHHH
T ss_pred             CCCcEeCCCC----CCCCCcccCCCCchHHHHHHHHHHHHHHHHhcCCccccChhHeEECcC--CCCCCCCCCHHHHHHH
Confidence            7999999998    779999999999999999999999999999999999999999999986  3689999999999999


Q ss_pred             HHhh-cccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eC-CCHHHHHHHHHhCCCeEE
Q 023657          178 FVHH-GVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYKNGPVEV  254 (279)
Q Consensus       178 ~~~~-G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~-~~~~~ik~~l~~~GPv~v  254 (279)
                      ++++ |+++|++|||.+.+             +    .|....     ...+.+..|. ++ .++++||++|.+ |||+|
T Consensus        75 ~~~~~Gi~~e~~yPY~~~~-------------~----~C~~~~-----~~~~~i~~~~~v~~~~~~~ik~~l~~-GPV~v  131 (215)
T 1iwd_A           75 IITNGGIDTQQNYPYSAVQ-------------G----SCKPYR-----LRVVSINGFQRVTRNNESALQSAVAS-QPVSV  131 (215)
T ss_dssp             HHHHTCBCBTTTSCCCSSC-------------C----CCCTTC-----CCCBCCCEEEECCTTCHHHHHHHHHH-SCEEE
T ss_pred             HHHhCCcccccccCccCCC-------------C----CCCCCC-----CceEEeCcEEEeCCCcHHHHHHHHHh-CCEEE
Confidence            9997 99999999997541             1    232211     1234566776 65 478899999976 99999


Q ss_pred             EEEecc-cCcCCc
Q 023657          255 SFTVYE-VKQTLT  266 (279)
Q Consensus       255 ~i~v~~-~F~~Y~  266 (279)
                      +|.+++ +|+.|+
T Consensus       132 ~i~~~~~~f~~Y~  144 (215)
T 1iwd_A          132 TVEAAGAPFQHYS  144 (215)
T ss_dssp             EECCCSHHHHTCC
T ss_pred             EEecCCcchhhcC
Confidence            999986 799876


No 26 
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A*
Probab=100.00  E-value=1.4e-38  Score=275.22  Aligned_cols=146  Identities=27%  Similarity=0.521  Sum_probs=122.3

Q ss_pred             CCCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHHHHH
Q 023657           97 KLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWR  176 (279)
Q Consensus        97 ~lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~  176 (279)
                      +||++||||++    +.++||||||.||||||||++++||++++|+++..+.||+|+|+||+.  .+.||+||++..||+
T Consensus         1 ~lP~~~DwR~~----g~vtpVkdQg~CGsCWAfa~~~~lE~~~~i~~g~~~~LS~q~lvdC~~--~~~gC~GG~~~~a~~   74 (246)
T 2b1m_A            1 DAPESWDWSKK----GVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVD--ESEGCYNGWHYQSFE   74 (246)
T ss_dssp             -CCSCEEGGGT----TCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT--TSBTTTBCCHHHHHH
T ss_pred             CCCCcCCCCCC----CCCCCcccCCCCchHHHHHHHHHHHHHHHHHcCCCcccCHHHHHhhcC--CCCCCCCCCHHHHHH
Confidence            48999999998    779999999999999999999999999999999999999999999985  468999999999999


Q ss_pred             HHHhh-cccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeE---E-eC-CCHHHHHHHHHh--
Q 023657          177 YFVHH-GVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAY---R-IN-SDPEDIMAEIYK--  248 (279)
Q Consensus       177 y~~~~-G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~---~-~~-~~~~~ik~~l~~--  248 (279)
                      |++++ |+++|++|||.+.+             +    .|....    ....+.+..|   . ++ .++++||++|++  
T Consensus        75 y~~~~~Gi~~e~~yPY~~~~-------------~----~C~~~~----~~~~~~i~~y~~~~~v~~~~~~~ik~~l~~~~  133 (246)
T 2b1m_A           75 WVVKHGGIASEADYPYKARD-------------G----KCKANE----IQDKVTIDNYGVQILSNESTESEAESSLQSFV  133 (246)
T ss_dssp             HHHHTTCBCBTTTSCCCSSC-------------C----CCCGGG----CCCCBCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHhCCcCccccccccCCC-------------C----cCcCCC----CCCceeEcCcceeeecCCChHHHHHHHHHhhc
Confidence            99998 99999999996541             2    232211    0223456666   5 65 588999999998  


Q ss_pred             -CCCeEEEEEecccCcCCc--cccc
Q 023657          249 -NGPVEVSFTVYEVKQTLT--LYSS  270 (279)
Q Consensus       249 -~GPv~v~i~v~~~F~~Y~--iY~~  270 (279)
                       +|||+|+|.+ ++|+.|+  ||.+
T Consensus       134 ~~GPV~v~i~~-~~f~~Y~~Giy~~  157 (246)
T 2b1m_A          134 LEQPISVSIDA-KDFHFYSGGIYDG  157 (246)
T ss_dssp             HHSCEEEEECC-TTGGGCCSSEECC
T ss_pred             cCCCEEEEEEc-chhhcccceeecC
Confidence             6999999999 8999876  5543


No 27 
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1
Probab=100.00  E-value=1.1e-38  Score=271.94  Aligned_cols=145  Identities=30%  Similarity=0.567  Sum_probs=121.6

Q ss_pred             CCCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHHHHH
Q 023657           97 KLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWR  176 (279)
Q Consensus        97 ~lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~  176 (279)
                      +||++||||++    +.|+||||||.||||||||++++||++++|+++..+.||+|+|+||+.  .+.||+||++..||+
T Consensus         2 ~lP~~~DwR~~----~~v~~VkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~--~~~gC~GG~~~~a~~   75 (221)
T 1cqd_A            2 DLPDSIDWREN----GAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTT--ANHGCRGGWMNPAFQ   75 (221)
T ss_dssp             -CCSCEETTTT----TCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT--TSCTTBCCCHHHHHH
T ss_pred             CCCCcCcCCCC----CCcCCcccCCCCccHHHHHHHHHHHHHHHHhcCCeeeeccceeEECCC--CCCCCCCCCHHHHHH
Confidence            68999999998    779999999999999999999999999999999999999999999986  368999999999999


Q ss_pred             HHHhh-cccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eC-CCHHHHHHHHHhCCCeE
Q 023657          177 YFVHH-GVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYKNGPVE  253 (279)
Q Consensus       177 y~~~~-G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~-~~~~~ik~~l~~~GPv~  253 (279)
                      |++++ |+++|++|||.+.+             +    .|....    ....+.+..|. ++ .++++||++|+ +|||+
T Consensus        76 y~~~~~Gi~~e~~yPY~~~~-------------~----~C~~~~----~~~~~~i~~y~~v~~~~~~~i~~~l~-~GPV~  133 (221)
T 1cqd_A           76 FIVNNGGINSEETYPYRGQD-------------G----ICNSTV----NAPVVSIDSYENVPSHNEQSLQKAVA-NQPVS  133 (221)
T ss_dssp             HHHHHTSBCBTTTSCCCSSC-------------C----CCCSSS----CCCSBCCSEEEECCSSCHHHHHHHHT-TSCEE
T ss_pred             HHHHhCCccccccCCccCCC-------------C----CcCCCC----CCceEEeccEEEeCCchHHHHHHHHH-hCCEE
Confidence            99997 99999999997541             1    232211    12345667777 65 47899999996 59999


Q ss_pred             EEEEec-ccCcCCc--ccc
Q 023657          254 VSFTVY-EVKQTLT--LYS  269 (279)
Q Consensus       254 v~i~v~-~~F~~Y~--iY~  269 (279)
                      |+|.++ ++|+.|+  ||.
T Consensus       134 v~i~~~~~~f~~Y~~Giy~  152 (221)
T 1cqd_A          134 VTMDAAGRDFQLYRSGIFT  152 (221)
T ss_dssp             EEECCCSHHHHTCCSSEEC
T ss_pred             EEEeccCcccccccCcccc
Confidence            999998 6899876  444


No 28 
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} SCOP: d.3.1.1 PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ...
Probab=100.00  E-value=1e-38  Score=271.80  Aligned_cols=149  Identities=28%  Similarity=0.556  Sum_probs=123.9

Q ss_pred             CCCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhc-CCCCCCCCCCCChHHHH
Q 023657           97 KLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACC-GFLCGDGCDGGYPISAW  175 (279)
Q Consensus        97 ~lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~-~~~~~~gC~GG~~~~a~  175 (279)
                      .||++||||++    +.|+||||||.||||||||++++||++++++++..+.||+|+|+||+ ....+.||+||++..|+
T Consensus         1 ~lP~~~DwR~~----~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~~gC~GG~~~~a~   76 (218)
T 3ovx_A            1 ILPDSVDWREK----GCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAF   76 (218)
T ss_dssp             -CCSCEEGGGG----TCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHSCGGGTCCGGGCCCHHHHH
T ss_pred             CCCCCCCcccC----CCCCCCccCCCCccHHHHHHHHHHHHHHHHHcCCccccCHHHheeccCCcCCCCCCCCCCHHHHH
Confidence            38999999998    77999999999999999999999999999999999999999999998 32247899999999999


Q ss_pred             HHHHh-hcccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eC-CCHHHHHHHHHhCCCe
Q 023657          176 RYFVH-HGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYKNGPV  252 (279)
Q Consensus       176 ~y~~~-~G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~-~~~~~ik~~l~~~GPv  252 (279)
                      +|+.+ +|+++|++|||.+..                 ..|....    .....++..|. ++ .++++||++|+++|||
T Consensus        77 ~~~~~~~Gi~~e~~yPY~~~~-----------------~~C~~~~----~~~~~~i~~~~~~~~~~~~~ik~~l~~~gPV  135 (218)
T 3ovx_A           77 QYIIDNKGIDSDASYPYKAMD-----------------QKCQYDS----KYRAATCSKYTELPYGREDVLKEAVANKGPV  135 (218)
T ss_dssp             HHHHHHTCEEBTTTSCCCSSC-----------------CCCCCCG----GGEEECCCEEEECCTTCHHHHHHHHHHTCCE
T ss_pred             HHHHHhCCcCcccccCccCCC-----------------CcccCCC----ccceeeeccEEEeCCCCHHHHHHHHHhcCCE
Confidence            99976 699999999996541                 2343322    13345667777 54 4889999999999999


Q ss_pred             EEEEEec-ccCcCCc--cccc
Q 023657          253 EVSFTVY-EVKQTLT--LYSS  270 (279)
Q Consensus       253 ~v~i~v~-~~F~~Y~--iY~~  270 (279)
                      +++|++. ++|+.|+  ||.+
T Consensus       136 ~v~~~~~~~~f~~y~~Giy~~  156 (218)
T 3ovx_A          136 SVGVDARHPSFFLYRSGVYYE  156 (218)
T ss_dssp             EEEECCCSHHHHHCCSSEECC
T ss_pred             EEEEEecchhhhcccCceecC
Confidence            9999997 4888876  4443


No 29 
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E*
Probab=100.00  E-value=1.3e-38  Score=270.97  Aligned_cols=145  Identities=26%  Similarity=0.509  Sum_probs=121.6

Q ss_pred             CCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHHHHHH
Q 023657           98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRY  177 (279)
Q Consensus        98 lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~y  177 (279)
                      ||++||||++    +.|+||||||.||||||||++++||++++|+++..+.||+|+|+||+.  .+.||+||++..|++|
T Consensus         1 lP~~~DwR~~----~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~--~~~gC~GG~~~~a~~~   74 (218)
T 1yal_A            1 YPQSIDWRAK----GAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDK--HSYGCKGGYQTTSLQY   74 (218)
T ss_dssp             CCSCEETTTT----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT--TSCTTBCCCHHHHHHH
T ss_pred             CCCcCcCCCC----CCCCCCccCccchhHHHHHHHHHHHHHHHHhcCCccccCHHHHHHhcC--CCCCCCCCCHHHHHHH
Confidence            7999999998    779999999999999999999999999999999999999999999984  4689999999999999


Q ss_pred             HHhhcccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eC-CCHHHHHHHHHhCCCeEEE
Q 023657          178 FVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYKNGPVEVS  255 (279)
Q Consensus       178 ~~~~G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~-~~~~~ik~~l~~~GPv~v~  255 (279)
                      ++++|+++|++|||.+..             +.|.....       ....+.+..|. ++ .++++||++|++ |||+++
T Consensus        75 ~~~~Gi~~e~~yPY~~~~-------------~~C~~~~~-------~~~~~~i~~y~~v~~~~~~~i~~~l~~-GPV~v~  133 (218)
T 1yal_A           75 VANNGVHTSKVYPYQAKQ-------------YKCRATDK-------PGPKVKITGYKRVPSNCETSFLGALAN-QPLSVL  133 (218)
T ss_dssp             HHHHCBCBTTTSCCCSSC-------------CCCCGGGC-------CSCCBCCSEEEECCSSBHHHHHHHHTT-SCEEEE
T ss_pred             HHHcCCCccccccccCCC-------------CCcccCcC-------CCceEEEeeEEEeCCCCHHHHHHHHHh-CCEEEE
Confidence            999999999999997541             22222111       02345667777 65 478899999965 999999


Q ss_pred             EEec-ccCcCCc--ccc
Q 023657          256 FTVY-EVKQTLT--LYS  269 (279)
Q Consensus       256 i~v~-~~F~~Y~--iY~  269 (279)
                      |.++ ++|+.|+  ||+
T Consensus       134 i~~~~~~f~~Y~~Giy~  150 (218)
T 1yal_A          134 VEAGGKPFQLYKSGVFD  150 (218)
T ss_dssp             ECCCSHHHHTCCSSEEC
T ss_pred             EeccchhccccCCceEC
Confidence            9996 7899876  444


No 30 
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0
Probab=100.00  E-value=8.8e-39  Score=272.77  Aligned_cols=146  Identities=25%  Similarity=0.474  Sum_probs=118.9

Q ss_pred             CCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHHHHHH
Q 023657           98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRY  177 (279)
Q Consensus        98 lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~y  177 (279)
                      ||++||||++    +.|+||||||.||||||||++++||++++|+++..+.||+|+|+||+.  .+.||+||++..|++|
T Consensus         1 lP~~~DwR~~----~~vtpVkdQg~cGSCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~--~~~gC~GG~~~~a~~~   74 (222)
T 3u8e_A            1 APASIDWRKK----GAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDT--XXXXXXGGDADDAFRW   74 (222)
T ss_dssp             CCSCEEGGGG----TCCCCCCBCCSCSSCTTTTHHHHHHHHHHHHHSCCCCBCHHHHHHHCC--------CCCHHHHHHH
T ss_pred             CCCcCcCCcC----CCCCCcccCCCCccHHHHHHHHHHHHHHHHHcCCCcccCHHHHHhccC--cccccCCCCHHHHHHH
Confidence            7999999998    779999999999999999999999999999999999999999999987  3789999999999999


Q ss_pred             HHhh-cccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eCCCHHHHHHHHHhCCCeEEE
Q 023657          178 FVHH-GVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGPVEVS  255 (279)
Q Consensus       178 ~~~~-G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~ik~~l~~~GPv~v~  255 (279)
                      ++++ |+++|++|||.+.+                 ..|....     ...+++..|. ++.++++||++| .+|||+|+
T Consensus        75 ~~~~~Gi~~e~~yPY~~~~-----------------~~C~~~~-----~~~~~i~~~~~v~~~~~~i~~~l-~~GPV~v~  131 (222)
T 3u8e_A           75 VITNGGIASDANYPYTGVD-----------------GTCDLNK-----PIAARIDGYTNVPNSSSALLDAV-AKQPVSVN  131 (222)
T ss_dssp             HHHHTCBCBTTTSCCCSSC-----------------CCCCCCS-----CCCBCCCEEEECCSCHHHHHHHH-HHSCEEEE
T ss_pred             HHHcCCccchhcCCCcccC-----------------CccccCC-----CCeEEEccEEEeCCcHHHHHHHH-hCCCEEEE
Confidence            9999 99999999997541                 1333222     1134566777 667889999999 67999999


Q ss_pred             EEecc-cCcCCccccc-ccccC
Q 023657          256 FTVYE-VKQTLTLYSS-TDFSA  275 (279)
Q Consensus       256 i~v~~-~F~~Y~iY~~-g~~~~  275 (279)
                      |+++. +|+.|+   + ||++.
T Consensus       132 i~~~~~~f~~Y~---~~Giy~~  150 (222)
T 3u8e_A          132 IYTSSTSFQLYT---GPGIFAG  150 (222)
T ss_dssp             ECCCSHHHHTCC---CSSCBCC
T ss_pred             EEecChhhhcEe---CCceECC
Confidence            99985 898765   5 66554


No 31 
>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia arguta} SCOP: d.3.1.1 PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A
Probab=100.00  E-value=1.4e-38  Score=271.14  Aligned_cols=147  Identities=29%  Similarity=0.518  Sum_probs=122.5

Q ss_pred             CCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHHHHHH
Q 023657           98 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRY  177 (279)
Q Consensus        98 lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~y  177 (279)
                      ||++||||++    +.|+|||||+.||||||||++++||++++|+++..+.||+|+|+||+....+.||+||++..|++|
T Consensus         1 lP~~~DwR~~----~~vtpVkdQg~cGsCWAfa~~~~lE~~~~i~~~~~~~LS~q~l~dC~~~~~~~gC~GG~~~~a~~~   76 (220)
T 3p5u_A            1 LPDYVDWRSS----GAVVDIKDQGQCGSAWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQNTRGCDGGFMTDGFQF   76 (220)
T ss_dssp             CCSCEETTTT----TCSCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCCSSCCTTBCCCHHHHHHH
T ss_pred             CCCCCcCCcC----CCCCCCCcCCCChhHHHHHHHHHHHHHHHHHcCCCCCcCHhHcEECCCCCCCCCCCCCCHHHHHHH
Confidence            7999999998    779999999999999999999999999999999999999999999997333789999999999999


Q ss_pred             HHhh-cccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eC-CCHHHHHHHHHhCCCeEE
Q 023657          178 FVHH-GVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYKNGPVEV  254 (279)
Q Consensus       178 ~~~~-G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~-~~~~~ik~~l~~~GPv~v  254 (279)
                      +.++ |+++|++|||.+.+             +.|......       ...+.+..|. ++ .++++||++| ++|||+|
T Consensus        77 ~~~~~Gi~~e~~yPY~~~~-------------~~C~~~~~~-------~~~~~i~~~~~v~~~~~~~l~~~l-~~GPV~v  135 (220)
T 3p5u_A           77 IINNGGINTEANYPYTAEE-------------GQCNLDLQQ-------EKYVSIDTYENVPYNNEWALQTAV-AYQPVSV  135 (220)
T ss_dssp             HHHHTCBCBTTTSCCCSSC-------------CCCCHHHHT-------CCSBCCCEEEECCTTCHHHHHHHH-TTSCEEE
T ss_pred             HHHhCCcCcccccccccCC-------------CCcCcCCCC-------CceEEEccEEEeCCCcHHHHHHHH-hcCCEEE
Confidence            9987 89999999996541             223222111       2234567777 64 5788899988 7999999


Q ss_pred             EEEec-ccCcCCc--ccc
Q 023657          255 SFTVY-EVKQTLT--LYS  269 (279)
Q Consensus       255 ~i~v~-~~F~~Y~--iY~  269 (279)
                      +|.++ ++|+.|+  ||+
T Consensus       136 ~~~~~~~~f~~Y~~Giy~  153 (220)
T 3p5u_A          136 ALEAAGYNFQHYSSGIFT  153 (220)
T ss_dssp             EECCCSHHHHTCCSSEEC
T ss_pred             EEecCchhhccccCceEC
Confidence            99996 6899877  554


No 32 
>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein, hydrola protease, secreted, thiol protease; HET: P6G; 1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A 3rvw_A* 3rvx_A 3rvv_A* 3d6s_A*
Probab=100.00  E-value=2.7e-38  Score=269.82  Aligned_cols=143  Identities=26%  Similarity=0.492  Sum_probs=123.9

Q ss_pred             cCCCCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHHH
Q 023657           95 SLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISA  174 (279)
Q Consensus        95 ~~~lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a  174 (279)
                      ..+||++||||++    +.++||||||.||||||||++++||++++++++..+.||+|+|+||+.   +.||+||++..|
T Consensus         7 ~~~lP~~~DwR~~----~~vtpVkdQg~cGsCWAfa~~~~lE~~~~~~~~~~~~lS~q~l~dc~~---~~gC~GG~~~~a   79 (222)
T 3f5v_A            7 NGNAPAEIDLRQM----RTVTPIRMQGGCGSAWAFSGVAATESAYLAYRQQSLDLAEQELVDCAS---QHGCHGDTIPRG   79 (222)
T ss_dssp             CCCCCSCEEHHHH----TCSCCCCBCCSSBCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHTC---SSTTBCCCHHHH
T ss_pred             ccCCCCCCCCccC----CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHhCcC---CCCCCCCCHHHH
Confidence            3589999999998    779999999999999999999999999999999999999999999986   689999999999


Q ss_pred             HHHHHhhcccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-e-CCCHHHHHHHHHh-CCC
Q 023657          175 WRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-I-NSDPEDIMAEIYK-NGP  251 (279)
Q Consensus       175 ~~y~~~~G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~-~~~~~~ik~~l~~-~GP  251 (279)
                      ++|++++|+++|++|||.+..                 ..|....     ...+++..|. + ..++++||++|++ +||
T Consensus        80 ~~~~~~~Gi~~e~~yPY~~~~-----------------~~C~~~~-----~~~~~i~~~~~v~~~~~~~ik~~l~~~~gp  137 (222)
T 3f5v_A           80 IEYIQHNGVVQESYYRYVARE-----------------QSCRRPN-----AQRFGISNYCQIYPPNANKIREALAQTHSA  137 (222)
T ss_dssp             HHHHHHHCEEBGGGSCCCSSC-----------------CCCCCCS-----SCEECCSEEEECCSCCHHHHHHHHHHHCCC
T ss_pred             HHHHHHcCCCchhhCCCcccC-----------------CCccCCc-----CcceeeccEEEeCCCCHHHHHHHHHhcCCC
Confidence            999999999999999997541                 1333211     3345677777 5 4688999999999 999


Q ss_pred             eEEEEEe--cccCcCCc
Q 023657          252 VEVSFTV--YEVKQTLT  266 (279)
Q Consensus       252 v~v~i~v--~~~F~~Y~  266 (279)
                      |+|+|.+  +++|++|+
T Consensus       138 V~v~~~~~~~~~f~~Y~  154 (222)
T 3f5v_A          138 IAVIIGIKDLDAFRHYD  154 (222)
T ss_dssp             EEEEEEESCHHHHHTCC
T ss_pred             EEEEEEeccchhhhccC
Confidence            9999999  46898876


No 33 
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1
Probab=100.00  E-value=2.9e-38  Score=270.72  Aligned_cols=147  Identities=27%  Similarity=0.490  Sum_probs=122.6

Q ss_pred             CCCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHHHHH
Q 023657           97 KLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWR  176 (279)
Q Consensus        97 ~lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~  176 (279)
                      +||++||||++    +.|+||||||.||||||||++++||++++|+++..+.||+|+|+||+. ..+.||+||++..||+
T Consensus         1 ~lP~~~DwR~~----~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~-~~~~gC~GG~~~~a~~   75 (229)
T 1s4v_A            1 TVPASVDWRKK----GAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDT-DQNQGCNGGLMDYAFE   75 (229)
T ss_dssp             CCCSCEETTTT----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCC-SSCCTTBCBCHHHHHH
T ss_pred             CCCCCEeCCCC----CCCCCCccCccchHHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHhhCC-CCCCCCCCCCHHHHHH
Confidence            58999999998    779999999999999999999999999999999999999999999985 3468999999999999


Q ss_pred             HHHhh-cccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eC-CCHHHHHHHHHhCCCeE
Q 023657          177 YFVHH-GVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYKNGPVE  253 (279)
Q Consensus       177 y~~~~-G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~-~~~~~ik~~l~~~GPv~  253 (279)
                      |++++ |+++|++|||.+..             +    .|.....   ....+.+..|. ++ .+++.||++|++ |||+
T Consensus        76 y~~~~~Gi~~e~~yPY~~~~-------------~----~C~~~~~---~~~~~~i~~y~~v~~~~~~~i~~~l~~-GPV~  134 (229)
T 1s4v_A           76 FIKQRGGITTEANYPYEAYD-------------G----TCDVSKE---NAPAVSIDGHENVPENDENALLKAVAN-QPVS  134 (229)
T ss_dssp             HHHHHTCBCBTTTSCCCSSC-------------C----CCCHHHH---TCCCBCCCEEEECCTTCHHHHHHHHHH-SCEE
T ss_pred             HHHHhCCccccccCCccCCC-------------C----CCCCCCC---CCcEEEeeeEEEeCCccHHHHHHHHhc-CCEE
Confidence            99998 99999999996541             1    3332110   12345677777 65 478899999976 9999


Q ss_pred             EEEEe-cccCcCCc--ccc
Q 023657          254 VSFTV-YEVKQTLT--LYS  269 (279)
Q Consensus       254 v~i~v-~~~F~~Y~--iY~  269 (279)
                      |+|.+ +++|+.|+  ||.
T Consensus       135 v~i~~~~~~f~~Y~~Giy~  153 (229)
T 1s4v_A          135 VAIDAGGSDFQFYSEGVFT  153 (229)
T ss_dssp             EEECCCSHHHHTCCSSEEC
T ss_pred             EEEEeCcHHHhhCCCcEEC
Confidence            99999 57899876  554


No 34 
>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A
Probab=100.00  E-value=4.4e-38  Score=271.51  Aligned_cols=142  Identities=24%  Similarity=0.502  Sum_probs=120.3

Q ss_pred             CCCCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHHHH
Q 023657           96 LKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAW  175 (279)
Q Consensus        96 ~~lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~  175 (279)
                      .+||++||||++    +.|+||||||.||||||||++++||++++|+++..+.||+|+|+||+.  .+.||+||++..|+
T Consensus        16 ~~lP~~~DwR~~----~~vtpVkdQg~CGsCWAFaa~~alE~~~~i~~~~~~~lSeq~l~dC~~--~~~gC~GG~~~~a~   89 (241)
T 2oul_A           16 NFDHAAYDWRLH----SGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSF--KNYGCNGGLINNAF   89 (241)
T ss_dssp             CCCSSCEEGGGT----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHCT--TSCTTBCBCHHHHH
T ss_pred             ccCCCccccCcC----CCCCCCccCccchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhhcC--CCCCCCCCCHHHHH
Confidence            479999999998    779999999999999999999999999999999999999999999986  36899999999999


Q ss_pred             HHHHh-hcccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eC-CCHHHHHHHHHhCCCe
Q 023657          176 RYFVH-HGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYKNGPV  252 (279)
Q Consensus       176 ~y~~~-~G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~-~~~~~ik~~l~~~GPv  252 (279)
                      +|+.+ .|+++|++|||.+..             +.   .|....    ....+++..|. ++ .++++||++|   |||
T Consensus        90 ~yi~~~~Gi~~e~~yPY~~~~-------------~~---~C~~~~----~~~~~~i~~~~~v~~~~~~~ik~~l---GPV  146 (241)
T 2oul_A           90 EDMIELGGICPDGDYPYVSDA-------------PN---LCNIDR----CTEKYGIKNYLSVPDNKLKEALRFL---GPI  146 (241)
T ss_dssp             HHHHHTTSBCBTTSSCCCTTS-------------CC---CCCTTS----SSCCBCCSEEEECCTTCHHHHHHHT---CCE
T ss_pred             HHHHHhCCcCccccCCCcCCC-------------CC---cCCCCC----CccceeeeeEEEeCCCCHHHHHHhh---CCE
Confidence            99998 699999999996541             11   133211    12335567776 65 4789999999   999


Q ss_pred             EEEEEecccCcCCc
Q 023657          253 EVSFTVYEVKQTLT  266 (279)
Q Consensus       253 ~v~i~v~~~F~~Y~  266 (279)
                      +|+|.++++|+.|+
T Consensus       147 ~v~i~~~~~f~~Y~  160 (241)
T 2oul_A          147 SISVAVSDDFAFYK  160 (241)
T ss_dssp             EEEECBCHHHHTCC
T ss_pred             EEEEecCcchhhcC
Confidence            99999988899876


No 35 
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare}
Probab=100.00  E-value=2.9e-38  Score=275.15  Aligned_cols=147  Identities=30%  Similarity=0.522  Sum_probs=122.7

Q ss_pred             CCCCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHHHH
Q 023657           96 LKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAW  175 (279)
Q Consensus        96 ~~lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~  175 (279)
                      .+||++||||++    +.|+||||||.||||||||++++||++++|+++..+.||+|+|+||+. ..+.||+||++..||
T Consensus         2 ~~lP~~~DwR~~----g~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~LSeQ~lvdC~~-~~~~GC~GG~~~~a~   76 (262)
T 2fo5_A            2 SDLPPSVDWRQK----GAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDT-ADNDGCQGGLMDNAF   76 (262)
T ss_dssp             -CCCSCEETTTT----TCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCC-SSCCGGGCBCHHHHH
T ss_pred             CCCCCcccCCCC----CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHhhcC-CCCCCCCCCCHHHHH
Confidence            369999999998    779999999999999999999999999999999999999999999985 357899999999999


Q ss_pred             HHHHhh-cccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccc-eEEeeeEE-eC-CCHHHHHHHHHhCCC
Q 023657          176 RYFVHH-GVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSK-HYSISAYR-IN-SDPEDIMAEIYKNGP  251 (279)
Q Consensus       176 ~y~~~~-G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~-~~~~~~~~-~~-~~~~~ik~~l~~~GP  251 (279)
                      +|++++ |+++|++|||.+..             +.|...+...     ... .+.+..|. ++ .++++||++|++ ||
T Consensus        77 ~yi~~~~Gi~~e~~yPY~~~~-------------~~C~~~~~~~-----~~~~~~~i~~y~~v~~~~e~~ik~al~~-GP  137 (262)
T 2fo5_A           77 EYIKNNGGLITEAAYPYRAAR-------------GTCNVARAAQ-----NSPVVVHIDGHQDVPANSEEDLARAVAN-QP  137 (262)
T ss_dssp             HHHHHTTCEEBTTTSCCCSSC-------------CCCCHHHHHH-----HCCCEECCCEEEECCTTCHHHHHHHHHH-SC
T ss_pred             HHHHHcCCcCchhcCCCcCcc-------------CccCCccccc-----CCceeEEeceEEEcCCchHHHHHHHHHh-CC
Confidence            999998 99999999996541             2232221000     123 46677887 65 578899999976 99


Q ss_pred             eEEEEEec-ccCcCCc
Q 023657          252 VEVSFTVY-EVKQTLT  266 (279)
Q Consensus       252 v~v~i~v~-~~F~~Y~  266 (279)
                      |+++|+++ ++|+.|+
T Consensus       138 V~v~i~~~~~~f~~Y~  153 (262)
T 2fo5_A          138 VSVAVEASGKAFMFYS  153 (262)
T ss_dssp             EEEEECCCSHHHHTCC
T ss_pred             EEEEEecChHHHhccC
Confidence            99999997 6899876


No 36 
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A*
Probab=100.00  E-value=6.5e-38  Score=270.81  Aligned_cols=142  Identities=25%  Similarity=0.520  Sum_probs=120.4

Q ss_pred             CCCCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHHHH
Q 023657           96 LKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAW  175 (279)
Q Consensus        96 ~~lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~  175 (279)
                      .+||++||||++    +.++||||||.||||||||++++||++++|+++..+.||+|+|+||+.  .+.||+||++..|+
T Consensus        18 ~~lP~~~DwR~~----~~vtpVkdQg~cGsCWAfa~~~alE~~~~i~~~~~~~lSeq~lvdC~~--~~~gC~GG~~~~a~   91 (243)
T 3bwk_A           18 KLDRIAYDWRLH----GGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSV--KNNGCYGGYITNAF   91 (243)
T ss_dssp             CCCCSCEEGGGT----TCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHCSCCCBCHHHHHHHCT--TSCGGGCCCHHHHH
T ss_pred             ccCCCceecCcC----CCCCCCccCCCCchHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHhcC--CCCCCCCCCHHHHH
Confidence            479999999998    779999999999999999999999999999999999999999999986  36899999999999


Q ss_pred             HHHHh-hcccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eC-CCHHHHHHHHHhCCCe
Q 023657          176 RYFVH-HGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYKNGPV  252 (279)
Q Consensus       176 ~y~~~-~G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~-~~~~~ik~~l~~~GPv  252 (279)
                      +|+.+ .|+++|++|||.+..             +.   .|....    ....+++..|. ++ .++++||++|   |||
T Consensus        92 ~y~~~~~Gi~~e~~yPY~~~~-------------~~---~C~~~~----~~~~~~i~~~~~v~~~~~~~ik~~l---GPV  148 (243)
T 3bwk_A           92 DDMIDLGGLCSQDDYPYVSNL-------------PE---TCNLKR----CNERYTIKSYVSIPDDKFKEALRYL---GPI  148 (243)
T ss_dssp             HHHHHTTSBCBTTTSCCCTTS-------------CC---CCCGGG----CSSCBCCCEEEECCTTCHHHHHHHT---CCE
T ss_pred             HHHHHhCCcccccccCCcCCC-------------CC---cCCCCC----CccceeeeeEEEeCCCCHHHHHHhh---CCE
Confidence            99998 699999999996541             11   133211    12345667776 65 4889999999   999


Q ss_pred             EEEEEecccCcCCc
Q 023657          253 EVSFTVYEVKQTLT  266 (279)
Q Consensus       253 ~v~i~v~~~F~~Y~  266 (279)
                      +|+|.++++|+.|+
T Consensus       149 ~v~i~~~~~f~~Y~  162 (243)
T 3bwk_A          149 SISIAASDDFAFYR  162 (243)
T ss_dssp             EEEECCCHHHHTCC
T ss_pred             EEEEecChhHHhcC
Confidence            99999988899876


No 37 
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0
Probab=100.00  E-value=8.3e-38  Score=267.21  Aligned_cols=148  Identities=26%  Similarity=0.535  Sum_probs=123.2

Q ss_pred             CCCCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHHHH
Q 023657           96 LKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAW  175 (279)
Q Consensus        96 ~~lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~  175 (279)
                      .+||++||||++    +.|+||||||.||||||||++++||++++++++..+.||+|+|+||+....+.||+||++..|+
T Consensus         5 ~~lP~~~Dwr~~----~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~gC~GG~~~~a~   80 (224)
T 3f75_A            5 SELPAGVDWRSR----GCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAEGNQSCSGGEMNDAF   80 (224)
T ss_dssp             GGSCSCEEHHHH----TCCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCGGGTCCGGGCBCHHHHH
T ss_pred             cCCCCceecccC----CCCCCCccCCCCccHHHHHHHHHHHHHHHHhcCCCceeCHHHHhhcccCCCCCCCCCCCHHHHH
Confidence            479999999998    7799999999999999999999999999999999999999999999863337899999999999


Q ss_pred             HHHHh-hcccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eC-CCHHHHHHHHHhCCCe
Q 023657          176 RYFVH-HGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYKNGPV  252 (279)
Q Consensus       176 ~y~~~-~G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~-~~~~~ik~~l~~~GPv  252 (279)
                      +|+++ +|+++|++|||.+.+             +    .|.....    .....+..|. +. .++++||++|. +|||
T Consensus        81 ~~~~~~~Gi~~e~~yPY~~~~-------------~----~C~~~~~----~~~~~i~~~~~~~~~~~~~l~~~l~-~gPV  138 (224)
T 3f75_A           81 QYVLDSGGICSEDAYPYLARD-------------E----ECRAQSC----EKVVKILGFKDVPRRSEAAMKAALA-KSPV  138 (224)
T ss_dssp             HHHHHHTCBCBTTTSCCCSSC-------------C----CCCGGGS----CCCBCCSEEEECCSSCHHHHHHHHH-HSCE
T ss_pred             HHHHHhCCccccccCCCcCCC-------------C----CCCcCCC----CceEEeccEEEeCCChHHHHHHHHc-CCCE
Confidence            99998 799999999997541             1    2322111    1223456676 54 57899999998 9999


Q ss_pred             EEEEEecc-cCcCCc--ccc
Q 023657          253 EVSFTVYE-VKQTLT--LYS  269 (279)
Q Consensus       253 ~v~i~v~~-~F~~Y~--iY~  269 (279)
                      +++|.++. +|+.|+  ||+
T Consensus       139 ~v~i~~~~~~f~~y~~Giy~  158 (224)
T 3f75_A          139 SIAIEADQMPFQFYHEGVFD  158 (224)
T ss_dssp             EEEECCCSHHHHTEEEEEEC
T ss_pred             EEEEeccchhhhcCccceEC
Confidence            99999975 888876  554


No 38 
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa}
Probab=100.00  E-value=2.3e-37  Score=274.09  Aligned_cols=205  Identities=19%  Similarity=0.185  Sum_probs=143.9

Q ss_pred             CceEeecCCCCCCCCHHHHHhhhCCCCCCCCCCCCCCcccccccCCCCCccccccCCCCCCcccccccccCccchhHHhh
Q 023657           52 AGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGA  131 (279)
Q Consensus        52 ~~~~~g~n~~fsd~t~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~  131 (279)
                      +......| ++.++..|.++..+|.++.+................+||++||||++    +   ||||||.||||||||+
T Consensus        12 ~~~~~~~~-~~~~~~~~~~~~~lG~~p~~~d~rd~~~~~~~~~~~~lP~s~DwR~~----~---pVkdQG~CGSCWAFAa   83 (291)
T 3ois_A           12 SGLVPRGS-HMQTVLKRRKKSGYGYIPDIADIRDFSYTPEKSVIAALPPKVDLTPP----F---QVYDQGRIGSCTANAL   83 (291)
T ss_dssp             ------------CCCCCCCCTTCCEECCCCCTTCCBCCCCHHHHHTCCSEEECCCS----S---CCCBCTTSSCHHHHHH
T ss_pred             cCcccchh-hHhHhhhccccccCCCCCCCCcccccccCCCccccccCCcceecccC----C---CcccCCCCccHHHHHH
Confidence            34445666 89999999999988887765544322111111113589999999997    3   9999999999999999


Q ss_pred             HHHHHHHHHHHhCCccccchhhhh--hhcCC--CCCCCCCCCChHHHHHHHHhhcccccccccCCCCC----CCCCCCCC
Q 023657          132 VEALSDRFCIHFGMNLSLSVNDLL--ACCGF--LCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDST----GCSHPGCE  203 (279)
Q Consensus       132 ~~~le~~~~i~~~~~~~lS~Q~li--dC~~~--~~~~gC~GG~~~~a~~y~~~~G~~~e~~yPY~~~~----~c~~~~c~  203 (279)
                      ++++|++++ +.+..+.||+|+|+  +|...  .+..+|+||++..||+|++++|+++|++|||.+.+    .|..+++.
T Consensus        84 ~~alE~~~~-~~g~~~~lS~q~l~~~~c~~~~~~~~~~c~GG~~~~A~~yi~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~  162 (291)
T 3ois_A           84 AAAIQFERI-HDKQSPEFIPSRLFIYYNERKIEGHVNYDSGAMIRDGIKVLHKLGVCPEKEWPYGDTPADPRTEEFPPGA  162 (291)
T ss_dssp             HHHHHHHHH-HTTCSSCCCBCHHHHHHHHHHHSSCTTSCCCEEHHHHHHHHHHTCCCBGGGSCCCCCCCCTTTCSCCTTC
T ss_pred             HHHHHHHHH-HhCCCCCcCcCHHHHHhhhhhhhcCCCCCCCcCHHHHHHHHHHhCCCCHhhCCCCCCccccccccccccc
Confidence            999999986 46677899999999  67631  22356899999999999999999999999997652    35553221


Q ss_pred             CCCCCcccccccccccccccccceEEeeeEE-eCCCHHHHHHHHHhCCCeEEEEEecccCcCCccccccccc
Q 023657          204 PAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGPVEVSFTVYEVKQTLTLYSSTDFS  274 (279)
Q Consensus       204 ~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~ik~~l~~~GPv~v~i~v~~~F~~Y~iY~~g~~~  274 (279)
                      ..  +..+...|...      ...+.+..|. ++.++++||++|+++|||+++|.++++|+.|+.|. ||++
T Consensus       163 ~~--~~~p~~~C~~~------~~~~~i~~y~~v~~~e~~i~~al~~~gPV~v~~~~~~~f~~y~~~~-Gi~~  225 (291)
T 3ois_A          163 PA--SKKPSDQCYKD------AQNYKITEYSRVAQDIDHLKACLAVGSPFVFGFSVYNSWVGNNSLP-VRIP  225 (291)
T ss_dssp             GG--GSCCCHHHHHH------HGGGCCCEEEECCSCHHHHHHHHHTTCCEEEEEEEEHHHHGGGCCC-SBCC
T ss_pred             cc--cCCCCHHHHhh------cccceeccEEEcCcCHHHHHHHHHcCCCEEEEEEeccchhhcCCCC-eEEe
Confidence            11  11123345432      2335677777 77789999999999999999999999999887443 6654


No 39 
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A
Probab=100.00  E-value=1.4e-36  Score=267.06  Aligned_cols=161  Identities=32%  Similarity=0.645  Sum_probs=126.3

Q ss_pred             cCCCCCccccccCCCCCCccccccccc---CccchhHHhhHHHHHHHHHHHhC-C--ccccchhhhhhhcCCCCCCCCCC
Q 023657           95 SLKLPKSFDARSAWPQCSTISRILDQG---HCGSCWAFGAVEALSDRFCIHFG-M--NLSLSVNDLLACCGFLCGDGCDG  168 (279)
Q Consensus        95 ~~~lP~~~D~R~~~~~~~~v~pv~nQg---~CGsCwAfa~~~~le~~~~i~~~-~--~~~lS~Q~lidC~~~~~~~gC~G  168 (279)
                      ..+||++||||+++ +.+.++|||||+   .||||||||++++||++++|+++ .  .+.||+|+|+||+.   ..||+|
T Consensus        33 ~~~lP~~~DwR~~~-~~~~vtpVkdQg~~~~CGSCWAfa~~~alE~~~~i~~~g~~~~~~LS~Q~lvdC~~---~~gC~G  108 (277)
T 1deu_A           33 PADLPKSWDWRNVD-GVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGN---AGSCEG  108 (277)
T ss_dssp             GGGSCSCEETTSBT-TBCCCCCCCBTTCSSCCBCHHHHHHHHHHHHHHHHHTTTCSSCCCBCHHHHHHHSS---SEETBE
T ss_pred             cccCCCceecccCC-CCCcCCccccCCCCCCCcchHHHHHHHHHHHHHHHHhCCCCCCcccCHHHHHhCcC---CCCCCC
Confidence            45799999999972 235699999999   99999999999999999999986 3  47999999999986   389999


Q ss_pred             CChHHHHHHHHhhcccccccccCCCCCC-CCC-CCCCCCCCCcccc--cccccccccccccceEEeeeEE-eCCCHHHHH
Q 023657          169 GYPISAWRYFVHHGVVTEECDPYFDSTG-CSH-PGCEPAYPTPKCV--RKCVKKNQLWRNSKHYSISAYR-INSDPEDIM  243 (279)
Q Consensus       169 G~~~~a~~y~~~~G~~~e~~yPY~~~~~-c~~-~~c~~~~~~~~c~--~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~ik  243 (279)
                      |++..||+|++++|+++|++|||.+.++ |.. ..|      ..|.  ..|....    ....+.+..|. +. ++++||
T Consensus       109 G~~~~a~~yi~~~Gi~~e~~yPY~~~~~~C~~~~~~------~~~~~~~~c~~~~----~~~~~~i~~y~~v~-~~~~i~  177 (277)
T 1deu_A          109 GNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQC------GTCNEFKECHAIR----NYTLWRVGDYGSLS-GREKMM  177 (277)
T ss_dssp             ECHHHHHHHHHHTCBCBGGGSCCCSSCCCCCHHHHS------EEEEETTEEEECS----SCCCBCEEEEEEEC-SHHHHH
T ss_pred             CCHHHHHHHHHHcCCCcCccCCCcCCCCCccccccc------cccccCccccccc----CcceEEeceeEecC-CHHHHH
Confidence            9999999999999999999999976521 331 111      1111  1233211    12345677777 54 679999


Q ss_pred             HHHHhCCCeEEEEEecccCcCCc--cccc
Q 023657          244 AEIYKNGPVEVSFTVYEVKQTLT--LYSS  270 (279)
Q Consensus       244 ~~l~~~GPv~v~i~v~~~F~~Y~--iY~~  270 (279)
                      ++|+++|||+|+|.++++|+.|+  ||.+
T Consensus       178 ~~i~~~GPV~v~i~~~~~f~~Y~~GIy~~  206 (277)
T 1deu_A          178 AEIYANGPISCGIMATERLANYTGGIYAE  206 (277)
T ss_dssp             HHHHHHCCEEEEECCCHHHHTCCSSEECB
T ss_pred             HHHHHcCCEEEEEecccccccCcCcEECC
Confidence            99999999999999998999876  5543


No 40 
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X
Probab=100.00  E-value=5.1e-33  Score=243.25  Aligned_cols=160  Identities=18%  Similarity=0.215  Sum_probs=110.3

Q ss_pred             CccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCC-hHHHHHHH
Q 023657          100 KSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGY-PISAWRYF  178 (279)
Q Consensus       100 ~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~-~~~a~~y~  178 (279)
                      ...|||+. ++|-.++||||||.||||||||++++||++++|+++..+.||+|||+||+...++.||+||. +..++.|+
T Consensus         9 ~~~dWR~~-~~~~~it~VkdQg~CGSCWAFaa~~alE~~~~i~~~~~~~LS~Q~lvdC~~~~~~~GC~GG~~~~~~~~~i   87 (265)
T 2wbf_X            9 YCNRLKDE-NNCISNLQVEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFLQII   87 (265)
T ss_dssp             CBCGGGCT-TSTGGGSCCCBCTTSSCHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHCCSSSCCCTTTCCCCHHHHHHHH
T ss_pred             HHHhhccC-CCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHhhcccCCCCCCCCCCHHHHHHHH
Confidence            45799985 56633449999999999999999999999999999899999999999998633478999996 44556888


Q ss_pred             Hhhc-ccccccccCCCC---CCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eCC-----C----HHHHHH
Q 023657          179 VHHG-VVTEECDPYFDS---TGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INS-----D----PEDIMA  244 (279)
Q Consensus       179 ~~~G-~~~e~~yPY~~~---~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~~-----~----~~~ik~  244 (279)
                      +++| +++|++|||...   ..|........ ....+...+....    ......+..|. +..     +    +++||+
T Consensus        88 ~~~Ggi~~e~~yPY~~~~~~~~C~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~y~~~~~~~~~~~~~~~~~~ik~  162 (265)
T 2wbf_X           88 EDYGFLPAESNYPYNYVKVGEQCPKVEDHWM-NLWDNGKILHNKN----EPNSLDGKGYTAYESERFHDNMDAFVKIIKT  162 (265)
T ss_dssp             HHHCCCCBTTTSCCCGGGTTSCCCCCCTTCC-CTTTTCEECCCCC----SSSTTCCSSEEEEEGGGGTTCHHHHHHHHHH
T ss_pred             HHcCCCCCccccCCcCCCCCCCCCCcccccc-ccccccccccccC----CCceeecCCceEeeccccccchhhHHHHHHH
Confidence            8887 899999999642   22443111000 0000000010000    00112233444 322     3    478999


Q ss_pred             HHHhCCCeEEEEEecccCcCCc
Q 023657          245 EIYKNGPVEVSFTVYEVKQTLT  266 (279)
Q Consensus       245 ~l~~~GPv~v~i~v~~~F~~Y~  266 (279)
                      +|+++|||+|+|.+. +|+.|+
T Consensus       163 ~i~~~GPV~v~i~~~-~f~~y~  183 (265)
T 2wbf_X          163 EVMNKGSVIAYIKAE-NVMGYE  183 (265)
T ss_dssp             HHHHHSCEEEEECGG-GGCSGG
T ss_pred             HHHhcCCEEEEEEcc-cccccc
Confidence            999999999999984 688775


No 41 
>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A
Probab=99.88  E-value=4e-23  Score=190.38  Aligned_cols=93  Identities=17%  Similarity=0.212  Sum_probs=83.1

Q ss_pred             CCCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHH-hCCccccch----------------hhhhhhcC
Q 023657           97 KLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIH-FGMNLSLSV----------------NDLLACCG  159 (279)
Q Consensus        97 ~lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~-~~~~~~lS~----------------Q~lidC~~  159 (279)
                      ..|..|+++..    ..++||+|||.||+|||||+++++|+.++++ ++..+.||+                |+++||+.
T Consensus        47 ~~~~~F~~~~~----~~~tpVknQg~cGsCWaFs~~~~le~~~~~k~~~~~~~lSe~yl~fwDKlEkan~flq~lidc~~  122 (453)
T 2cb5_A           47 RAQHVFQHAVP----QEGKPITNQKSSGRSWIFSCLNVMRLPFMKKLNIEEFEFSQSYLFFWDKVERCYFFLSAFVDTAQ  122 (453)
T ss_dssp             HCCCCCSEECS----CCCSSCCBCCBSSCHHHHHHHHHHHHHHHHHTTCSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCceeeeec----cCCCCcccCCCccchHhhhhHHHHHHHHHHHhcCCeEeeChHHHHHHHHHHHhhHHHHHHHHHHh
Confidence            45778888876    5589999999999999999999999999999 568899999                99999975


Q ss_pred             C------------CCCCCCCCCChHHHHHHHHhhcccccccccCCC
Q 023657          160 F------------LCGDGCDGGYPISAWRYFVHHGVVTEECDPYFD  193 (279)
Q Consensus       160 ~------------~~~~gC~GG~~~~a~~y~~~~G~~~e~~yPY~~  193 (279)
                      .            ..+.||+||....|++|+.++|++++++|||+.
T Consensus       123 ~~~~~d~R~v~~l~~~~gcdGG~~~~a~~~i~kyGl~p~~~yP~~~  168 (453)
T 2cb5_A          123 RKEPEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGVIPKKCFPESY  168 (453)
T ss_dssp             TTCCTTSHHHHHHHHCTTCSCBCHHHHHHHHHHHCCCBGGGSCCCT
T ss_pred             ccCCcchhhHHHhcCCCCCCCCChHHHHHHHHHcCccchhhccccc
Confidence            2            136899999999999999999999999999965


No 42 
>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A
Probab=99.83  E-value=3.5e-21  Score=177.65  Aligned_cols=91  Identities=15%  Similarity=0.220  Sum_probs=70.3

Q ss_pred             CCCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHH-hCCccccch----------------hhhhhhcC
Q 023657           97 KLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIH-FGMNLSLSV----------------NDLLACCG  159 (279)
Q Consensus        97 ~lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~-~~~~~~lS~----------------Q~lidC~~  159 (279)
                      ..|..|+++..    +.++||+|||.||+|||||+++++|+.++++ ++..+.||+                |+|+||+.
T Consensus        52 ~~~~~F~~~~~----~~vtpVknQg~cGsCWaFs~~~~lE~~~~~~~~~~~~~LSe~yl~~~dklEkan~flq~lvdc~~  127 (457)
T 2e01_A           52 QDNRVFNTVVS----TDSTPVTNQKSSGRCWLFAATNQLRLNVLSELNLKEFELSQAYLFFYDKLEKANYFLDQIVSSAD  127 (457)
T ss_dssp             HCCCCCSEECC----------------CCHHHHHHHHHHHHHHHHHTTCSSCCBCHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCCceEEEec----CCccCcccCCCCccchhHHhHHHHHHHHHHHhCCCceeeCChhhhhhhHHHHHHHHHHHHHHhcC
Confidence            46677887765    4599999999999999999999999999998 778999999                78999975


Q ss_pred             CC----------CCCCCCCCChHHHHHHHHhhcccccccccC
Q 023657          160 FL----------CGDGCDGGYPISAWRYFVHHGVVTEECDPY  191 (279)
Q Consensus       160 ~~----------~~~gC~GG~~~~a~~y~~~~G~~~e~~yPY  191 (279)
                      ..          .+.||+||....+++|+.++|+++|++|||
T Consensus       128 ~~~~~r~v~~l~~~~gcdGG~~~~a~~~i~kyGivpe~~yP~  169 (457)
T 2e01_A          128 QDIDSRLVQYLLAAPTEDGGQYSMFLNLVKKYGLIPKDLYGD  169 (457)
T ss_dssp             SCTTSHHHHHHHHCTTCSCBCHHHHHHHHHHHCCCBGGGSCS
T ss_pred             CcccchhhhhhccCCCCCCCCHHHHHHHHHHcCccchhhcCC
Confidence            11          368999999999999999999999999999


No 43 
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis}
Probab=99.83  E-value=3.1e-21  Score=174.32  Aligned_cols=77  Identities=19%  Similarity=0.156  Sum_probs=71.9

Q ss_pred             ccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCC----------CCCCCCCCCChHHHHHHHHhhcc
Q 023657          114 ISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGF----------LCGDGCDGGYPISAWRYFVHHGV  183 (279)
Q Consensus       114 v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~----------~~~~gC~GG~~~~a~~y~~~~G~  183 (279)
                      ++||+|||.||||||||+++++|+.++++++..+.||+|+|+||+..          ..+.||+||....|++|++++|+
T Consensus        22 vtpVknQg~cGsCWaFSa~~~lE~~~~~k~~~~~~LSeq~Lvdcd~~ekan~~l~~~g~~~gcdGG~~~~a~~~i~k~Gi  101 (383)
T 3pw3_A           22 ITSVKNQNRAGTCWCYSSYSFLESELLRMGKGEYDLSEMFTVYNTYLDRADAAVRTHGDVSFSQGGSFYDALYGMETFGL  101 (383)
T ss_dssp             CCCCCBCCBSSCHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHHHHHHHHHHTTTCSCCCSCCCHHHHHHHHHHTCC
T ss_pred             CCCcccCCCCcHHHHHHhHHHHHHHHHHHcCCCCccChHHHHhhchhhhhhhhhhhccCCCCCCCCCHHHHHHHHHHcCc
Confidence            89999999999999999999999999999999999999999999731          12479999999999999999999


Q ss_pred             ccccccc
Q 023657          184 VTEECDP  190 (279)
Q Consensus       184 ~~e~~yP  190 (279)
                      ++|++||
T Consensus       102 vpe~~YP  108 (383)
T 3pw3_A          102 VPEEEMR  108 (383)
T ss_dssp             CBGGGSC
T ss_pred             CcHHhCC
Confidence            9999999


No 44 
>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Probab=98.56  E-value=3.5e-08  Score=73.26  Aligned_cols=56  Identities=16%  Similarity=0.254  Sum_probs=45.7

Q ss_pred             hccccccc-chhhhccccChHH--HHHHHHcCCCCceEeecCCCCCCCCHHHHHh-hhCCCC
Q 023657           21 QTFAEGVV-SKLKLDSHILQDS--IIKEVNENPKAGWKAARNPQFSNYTVGQFKH-LLGVKP   78 (279)
Q Consensus        21 ~~~~~~~~-~~~~~~~~i~~~~--~i~~~N~~~~~~~~~g~n~~fsd~t~~ef~~-~~~~~~   78 (279)
                      ...+.|.. .|...|+.||.++  +|+++|+. +.+|++|+| +|+|||.+||++ ++|.+.
T Consensus        31 ~~~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~~-~~sy~lglN-~FaDLT~eEF~~~~lg~~~   90 (106)
T 3f75_P           31 MYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQ-GYSYSLKMN-HFGDLSRDEFRRKYLGFKK   90 (106)
T ss_dssp             HHTCCCSSHHHHHHHHHHHHHHHHHHHHHHTS-CCSEEECCC-TTTTCCHHHHHHHSCCBCC
T ss_pred             HhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhc-CCCeeeCCc-ccccCCHHHHHHHHcCCCC
Confidence            44566655 5777899999997  49999996 889999999 999999999998 555543


No 45 
>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster}
Probab=98.43  E-value=9.3e-08  Score=67.50  Aligned_cols=56  Identities=23%  Similarity=0.251  Sum_probs=43.2

Q ss_pred             hccccccc-chhhhccccChHH--HHHHHHcCC---CCceEeecCCCCCCCCHHHHHhhhCCCC
Q 023657           21 QTFAEGVV-SKLKLDSHILQDS--IIKEVNENP---KAGWKAARNPQFSNYTVGQFKHLLGVKP   78 (279)
Q Consensus        21 ~~~~~~~~-~~~~~~~~i~~~~--~i~~~N~~~---~~~~~~g~n~~fsd~t~~ef~~~~~~~~   78 (279)
                      .+.+.|.. .|...| .||.++  .|++||++.   ..+|++|+| +|+|||.+||+.++|.+.
T Consensus        16 ~~~K~Y~~~~E~~~R-~iF~~N~~~I~~hN~~~~~g~~sy~lg~N-~FaDlT~eEf~~~~g~~~   77 (80)
T 2l95_A           16 KFDKNYEAEEDLMRR-RIYAESKARIEEHNRKFEKGEVTWKMGIN-HLADLTPEEFAQRSGKKV   77 (80)
T ss_dssp             HHTCCCCHHHHHHHH-HHHHHHHHHHHHHHTTGGGTSCCCCCCCC-GGGTSSHHHHHHHHTSCC
T ss_pred             HhCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHhccCCCCeEecCc-ccccCCHHHHHHHhCCCC
Confidence            45666754 567778 999987  499999852   478999999 999999999933666543


No 46 
>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A
Probab=70.35  E-value=2.7  Score=38.62  Aligned_cols=36  Identities=6%  Similarity=0.040  Sum_probs=25.6

Q ss_pred             eCCCH--HHHHHHHHhCCCeEEEEEecccCcCCccccccccc
Q 023657          235 INSDP--EDIMAEIYKNGPVEVSFTVYEVKQTLTLYSSTDFS  274 (279)
Q Consensus       235 ~~~~~--~~ik~~l~~~GPv~v~i~v~~~F~~Y~iY~~g~~~  274 (279)
                      ++.++  +.++.+|.+.|||.++++|.+ |.+|   ++||++
T Consensus       306 vp~d~l~~~~~~aL~~g~PV~~~~Dv~~-~~~~---~~GI~~  343 (457)
T 2e01_A          306 VDNETLSKLVVKRLQNNKAVFFGSHTPK-FMDK---KTGVMD  343 (457)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECTTT-TEET---TTTEEC
T ss_pred             cCHHHHHHHHHHHHHhCCCEEEEEEcCH-hHcc---cCceec
Confidence            55443  566788889999999999975 5554   556654


No 47 
>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A
Probab=67.06  E-value=43  Score=26.46  Aligned_cols=57  Identities=19%  Similarity=0.135  Sum_probs=41.0

Q ss_pred             ccccCccchhHHhhHHHHHHHHH--------HHhCCccccchhhhhhhcCCCCCCCCCCCChHHHHHHHHhhccc
Q 023657          118 LDQGHCGSCWAFGAVEALSDRFC--------IHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVV  184 (279)
Q Consensus       118 ~nQg~CGsCwAfa~~~~le~~~~--------i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~y~~~~G~~  184 (279)
                      ..||.-+=|-+|+.++.|-....        |.+...+.+|+|+|.++.          ..+...++|++..|..
T Consensus        25 ETQg~~~WCa~Y~~aAilN~~~nt~~~nA~~iMr~~yPN~s~~~l~~t~----------~~~~q~Iky~~s~G~~   89 (183)
T 1pxv_A           25 EQQFDNSWAAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNCA----------TFPNQMIEYGKSQGRD   89 (183)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHHTCSCCCHHHHHHHHSTTSCTTTGGGCC----------BCHHHHHHHHHHTTCC
T ss_pred             eccCcCchHHHHHHHHHHHhhhccCcCCHHHHHHHHCCCCChhHHhhcC----------CCHHHHHHHHHHcCcC
Confidence            34888888999999998876542        112245778888888843          4688899998876644


No 48 
>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid, hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1 d.17.1.4
Probab=52.91  E-value=56  Score=28.69  Aligned_cols=57  Identities=21%  Similarity=0.191  Sum_probs=40.3

Q ss_pred             ccccCccchhHHhhHHHHHHHH--------HHHhCCccccchhhhhhhcCCCCCCCCCCCChHHHHHHHHhhccc
Q 023657          118 LDQGHCGSCWAFGAVEALSDRF--------CIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVV  184 (279)
Q Consensus       118 ~nQg~CGsCwAfa~~~~le~~~--------~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~y~~~~G~~  184 (279)
                      ..||.=+=|-+|+.+++|-...        .|.+...+.+|+++|.++.          ..+...++|++..|..
T Consensus       201 ETQg~~pWCa~Ya~aailN~~~~t~~~nA~~iMr~~yPN~S~~~l~~ts----------~~~~q~Iky~qsyG~~  265 (367)
T 1x9y_A          201 EQQFDNSWCAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNCA----------TFPNQMIEYGKSQGRD  265 (367)
T ss_dssp             CCCSSSSCHHHHHHHHHHHHHTTCSCCCHHHHHHHHCTTSCTTTGGGCC----------CCHHHHHHHHHHTTEE
T ss_pred             eccCCCchHHHHHHHHHHHhhhccCcCCHHHHHHHHCCCCChhHHhhcC----------CCHHHHHHHHHHhCcc
Confidence            3588888899999999886544        1122235678888888843          3688899998876644


No 49 
>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET: E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1
Probab=41.82  E-value=42  Score=26.33  Aligned_cols=55  Identities=15%  Similarity=0.135  Sum_probs=41.0

Q ss_pred             cccCccchhHHhhHHHHHHHHH--------HHhCCccccchhhhhhhcCCCCCCCCCCCChHHHHHHHHhhcc
Q 023657          119 DQGHCGSCWAFGAVEALSDRFC--------IHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGV  183 (279)
Q Consensus       119 nQg~CGsCwAfa~~~~le~~~~--------i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~y~~~~G~  183 (279)
                      .||.=+=|-+|+.++.|-....        |.+...+.+|++||..+..          .+.+.++|++..|-
T Consensus        17 TQg~~pWCa~Ya~aailN~~~~~~~~~A~~imr~~yPn~S~~~l~~~~~----------t~~e~iky~~s~g~   79 (174)
T 1cv8_A           17 TQGNNGWCAGYTMSALLNATYNTNKYHAEAVMRFLHPNLQGQQFQFTGL----------TPREMIYFGQTQGR   79 (174)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHHTCCCCCHHHHHHHHCSSCCHHHHHHCCC----------CHHHHHHHHHHTTC
T ss_pred             ccCCCchHHHHHHHHHHHhhhccCcCCHHHHHHHHCCCCCHHHHhhcCC----------CHHHHHHHHHHcCC
Confidence            4888888999999999876542        2222457899999996543          57789999888765


No 50 
>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens}
Probab=24.46  E-value=15  Score=27.12  Aligned_cols=13  Identities=31%  Similarity=1.188  Sum_probs=10.3

Q ss_pred             cccCccchhHHhh
Q 023657          119 DQGHCGSCWAFGA  131 (279)
Q Consensus       119 nQg~CGsCwAfa~  131 (279)
                      |.-.||+||-..-
T Consensus        56 ns~~CGtC~~lty   68 (120)
T 3m3g_A           56 NSASCGTCWKLQY   68 (120)
T ss_dssp             TCTTTTCEEEEEE
T ss_pred             CCCCCCceEEEEE
Confidence            7789999996543


No 51 
>3sum_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.87A {Moniliophthora perniciosa}
Probab=23.19  E-value=19  Score=27.15  Aligned_cols=14  Identities=43%  Similarity=1.030  Sum_probs=11.6

Q ss_pred             ccccCccchhHHhh
Q 023657          118 LDQGHCGSCWAFGA  131 (279)
Q Consensus       118 ~nQg~CGsCwAfa~  131 (279)
                      .|+-.||+||-..-
T Consensus        55 wns~~CGtCwkLtY   68 (136)
T 3sum_A           55 EAQTECGSCWKLRY   68 (136)
T ss_dssp             BTTBCTTCEEEEEE
T ss_pred             cCCCCCCceEEEEE
Confidence            89999999996543


No 52 
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=22.72  E-value=14  Score=18.88  Aligned_cols=9  Identities=44%  Similarity=1.350  Sum_probs=7.0

Q ss_pred             CccchhHHh
Q 023657          122 HCGSCWAFG  130 (279)
Q Consensus       122 ~CGsCwAfa  130 (279)
                      +||..||-+
T Consensus        17 ncgnswacs   25 (27)
T 2hgo_A           17 NCGNSWACS   25 (27)
T ss_dssp             SSSCEEECS
T ss_pred             CcCCccccc
Confidence            689999854


No 53 
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=22.69  E-value=42  Score=22.37  Aligned_cols=26  Identities=15%  Similarity=0.078  Sum_probs=19.0

Q ss_pred             ccccccccCccchhHHhhHHHHHHHHHH
Q 023657          114 ISRILDQGHCGSCWAFGAVEALSDRFCI  141 (279)
Q Consensus       114 v~pv~nQg~CGsCwAfa~~~~le~~~~i  141 (279)
                      +--|+=||.|++|  ...-..+|..+.-
T Consensus        37 ~V~v~l~GaC~gc--~Tlk~gIe~~L~~   62 (74)
T 1th5_A           37 IVKVRLTGPAAVV--RTVRIAVSKKLRE   62 (74)
T ss_dssp             EEEECCCSSSSSS--SSHHHHHHHHHHH
T ss_pred             EEEEEEecCCcch--HHHHHHHHHHHHH
Confidence            4468889999999  3444588877764


No 54 
>3oj3_I Tumor necrosis factor alpha-induced protein 3; ubiquitin, zinc finger, zinc ION, protein binding-hydrolase; 2.50A {Homo sapiens} PDB: 3oj4_C
Probab=20.84  E-value=41  Score=20.45  Aligned_cols=20  Identities=20%  Similarity=0.609  Sum_probs=18.1

Q ss_pred             CCCCcccccccccCccchhH
Q 023657          109 PQCSTISRILDQGHCGSCWA  128 (279)
Q Consensus       109 ~~~~~v~pv~nQg~CGsCwA  128 (279)
                      ++||+...+..++.|.-||-
T Consensus        24 ngCGFfG~p~t~n~CSkCyr   43 (49)
T 3oj3_I           24 AGCVYFGTPENKGFCTLCFI   43 (49)
T ss_dssp             TTCSSBCBGGGTTBCHHHHH
T ss_pred             CCCCCccCcccCCcchHHHH
Confidence            58999999999999999984


No 55 
>1unk_A Colicin E7; immunity protein, dimeric structure, RNAse active site; 1.80A {Escherichia coli} SCOP: a.28.2.1 PDB: 1mz8_A 1ayi_A 2jaz_A 2jb0_A 2jbg_A 7cei_A 1znv_A 1cei_A 1ujz_A 2erh_A
Probab=20.24  E-value=40  Score=23.33  Aligned_cols=16  Identities=38%  Similarity=0.638  Sum_probs=13.0

Q ss_pred             CCCCCCCCHHHHHhhh
Q 023657           59 NPQFSNYTVGQFKHLL   74 (279)
Q Consensus        59 n~~fsd~t~~ef~~~~   74 (279)
                      +..++|+|++||.+++
T Consensus         4 k~~i~DYTE~EFl~fv   19 (87)
T 1unk_A            4 KNSISDYTEAEFVQLL   19 (87)
T ss_dssp             CCSGGGSCHHHHHHHH
T ss_pred             ccchhhcCHHHHHHHH
Confidence            3489999999998754


Done!