Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>023659
MSSVSFSSIFTNNGRSLGAPVSLLRTLASTHASCHRNIYKSNVVLSFSSSNRNFVCESWK
RHVFTHTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICREL
NLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREA
QKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGG
TTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGWRKR

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  023659
        (279 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2119073 - symbol:AT4G21770 species:3702 "Arabi...   861  4.3e-86   1


>TAIR|locus:2119073 [details] [associations]
            symbol:AT4G21770 species:3702 "Arabidopsis thaliana"
            [GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
            evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM] [GO:0009982
            "pseudouridine synthase activity" evidence=IEA;ISS;TAS]
            InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
            PROSITE:PS50889 GO:GO:0009507 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161555 EMBL:AL035527
            GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 EMBL:AY142506
            EMBL:AK226645 IPI:IPI00544059 PIR:T05852 RefSeq:NP_193908.1
            UniGene:At.32599 ProteinModelPortal:Q9SVS0 PRIDE:Q9SVS0
            EnsemblPlants:AT4G21770.1 GeneID:828265 KEGG:ath:AT4G21770
            TAIR:At4g21770 eggNOG:NOG306455 HOGENOM:HOG000242495
            InParanoid:Q9SVS0 OMA:THQIDNC PhylomeDB:Q9SVS0
            ProtClustDB:CLSN2685595 Genevestigator:Q9SVS0 Uniprot:Q9SVS0
        Length = 472

 Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
 Identities = 172/271 (63%), Positives = 206/271 (76%)

Query:     7 SSIFTNNGRSLGAPVSLLRTLASTHASCHRNIYKSNVVLS-FSSSNRNFVCESWKRHVFX 65
             S   T   R+L APVSLLRTLAST  +    +++SN     F SS + F C S  +    
Sbjct:     3 SPALTGGYRNLTAPVSLLRTLASTRVTTP--LFRSNKHSPRFISSPKRFTCLSLLK---- 56

Query:    66 XXXXXXXXXXXXPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVL-EYICRELNLPP 124
                          S+ GY EY+RL+PCP+ N PPR+EH+VV E   ++ E+I ++L+LPP
Sbjct:    57 -TDSQNQTTLSSSSNSGYHEYNRLMPCPAYNLPPRIEHMVVLEDDVLVSEFISKQLDLPP 115

Query:   125 LFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTF 184
             L+VADLI FGAV+YALVCPKPP TATPE++ +F+EVT PSVL KRSSIKGKTVREAQKTF
Sbjct:   116 LYVADLIRFGAVHYALVCPKPPPTATPEEIILFEEVTSPSVLKKRSSIKGKTVREAQKTF 175

Query:   185 RITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN 244
             R+TH +Q  EAGTYLRVHVHPKR PRCY+IDW SRI+AVT+S+V+LDKPAGT+VGGTTDN
Sbjct:   176 RVTHTNQYAEAGTYLRVHVHPKRSPRCYEIDWKSRIVAVTDSYVILDKPAGTTVGGTTDN 235

Query:   245 IEESCATFASRALGLTTPLRTTHQIDNCTEG 275
             IEESCATFASRAL L  PL+TTHQIDNCTEG
Sbjct:   236 IEESCATFASRALDLPEPLKTTHQIDNCTEG 266


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      279       266   0.00094  114 3  11 22  0.45    33
                                                     32  0.39    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  218 KB (2120 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.95u 0.24s 23.19t   Elapsed:  00:00:01
  Total cpu time:  22.95u 0.24s 23.19t   Elapsed:  00:00:01
  Start:  Fri May 10 13:34:11 2013   End:  Fri May 10 13:34:12 2013

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