BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023659
(279 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224076324|ref|XP_002304926.1| predicted protein [Populus trichocarpa]
gi|222847890|gb|EEE85437.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/275 (71%), Positives = 224/275 (81%), Gaps = 12/275 (4%)
Query: 1 MSSVSFSSIFTNNGRSLGAPVSLLRTLASTHASCHRNIYKSNVVLSFSSSNRNFVCESWK 60
M+S++ +SIF+ + RS APV+LLRTLA T A ++ K +V S S + CES K
Sbjct: 1 MASLNLASIFSYSYRSFSAPVTLLRTLAFTRA---YSLNKKALVWC-SLSKKKLSCESLK 56
Query: 61 RHVFTHTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICREL 120
+ + T T+++ GYPEY RLLPCPS N PPR+EHLVVSE GPVL+YIC+ L
Sbjct: 57 QDIACTTATSSVN--------GYPEYTRLLPCPSHNSPPRIEHLVVSEEGPVLDYICKAL 108
Query: 121 NLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREA 180
+LPPLFVADLIHFGAV+YALVCP+PP TATPEQ+RVF+EVT PSVL KR+SIKGKTVREA
Sbjct: 109 DLPPLFVADLIHFGAVHYALVCPQPPRTATPEQIRVFEEVTAPSVLKKRASIKGKTVREA 168
Query: 181 QKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGG 240
QKTFRITHVDQ +EAG YLRVHVHPKRFPRCYDIDW SRII VTES VVLDKPAGTSVGG
Sbjct: 169 QKTFRITHVDQFLEAGMYLRVHVHPKRFPRCYDIDWKSRIIHVTESFVVLDKPAGTSVGG 228
Query: 241 TTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
TTDNIEESCATFA+RALGLT PLRTTHQIDNCTEG
Sbjct: 229 TTDNIEESCATFATRALGLTAPLRTTHQIDNCTEG 263
>gi|255554955|ref|XP_002518515.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
gi|223542360|gb|EEF43902.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
Length = 476
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 196/277 (70%), Positives = 223/277 (80%), Gaps = 10/277 (3%)
Query: 1 MSSVSFSSIFTNNGRSLGAPVSLLRTLASTHA-SCHRNIYKSNVV-LSFSSSNRNFVCES 58
MSS+S +SIF RS PV++LRTLASTHA S HR+ K+ + S +S R F CES
Sbjct: 1 MSSLSLASIFAGGYRSFVTPVTVLRTLASTHAYSFHRHHPKNALARFSLNSHERKFCCES 60
Query: 59 WKRHVFTHTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICR 118
K V T+T+ + G +Y RLLPCPS N PPR+EHLVV E GPVL+YIC+
Sbjct: 61 SKPEVAYTTNTSCVN--------GNSDYDRLLPCPSYNRPPRIEHLVVLEEGPVLDYICK 112
Query: 119 ELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVR 178
L+LPPLFVADLI FGAV+YALVCP+PP TATPEQ+R+F++ T PSVL KRSSIKGKTVR
Sbjct: 113 ALDLPPLFVADLIDFGAVHYALVCPRPPTTATPEQIRLFEKFTAPSVLKKRSSIKGKTVR 172
Query: 179 EAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV 238
EAQKTFRITHVDQ +EAGTYLRVHVHPKRFPRCYDIDW SRIIAVT+ +VVLDKPAGTSV
Sbjct: 173 EAQKTFRITHVDQYLEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVTDCYVVLDKPAGTSV 232
Query: 239 GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
GGT DNIEESCATFA+RALGLTTPL+TTHQIDNCTEG
Sbjct: 233 GGTADNIEESCATFATRALGLTTPLKTTHQIDNCTEG 269
>gi|225444351|ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic [Vitis
vinifera]
gi|302144082|emb|CBI23187.3| unnamed protein product [Vitis vinifera]
Length = 472
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/272 (71%), Positives = 219/272 (80%), Gaps = 21/272 (7%)
Query: 7 SSIFTNNGRSLGAPVSLLRTLASTHASCHRN---IYKSNVVLSFSSSNRNFVCESWKRHV 63
SS++ +N RS G PV+L RTLAS++ R+ ++ SN N C
Sbjct: 16 SSLWNSNCRSFGTPVALARTLASSNVFSRRHKRVVWCSN----------NPTC------- 58
Query: 64 FTHTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLP 123
T TA+ +A T S GYPEYHRLLPCPSQN PPRVEHLVVSEGG VL+YI + L+LP
Sbjct: 59 -TRELTASSDSANTSSVNGYPEYHRLLPCPSQNGPPRVEHLVVSEGGCVLDYISKALDLP 117
Query: 124 PLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKT 183
PLFVADLIHFGAVYYALVCP+PP +ATPEQ+R+FKEVT PSVL KR SIKGKT+REAQKT
Sbjct: 118 PLFVADLIHFGAVYYALVCPEPPPSATPEQVRLFKEVTAPSVLRKRPSIKGKTIREAQKT 177
Query: 184 FRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTD 243
FRIT V++ VEAGTYLRVHVHPKRFPRCY+IDW SRIIAVTES+VVLDKPAGTSVGGTTD
Sbjct: 178 FRITDVNEFVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTD 237
Query: 244 NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
NIEESCATFA+RALGLTTPLRTTHQIDNCTEG
Sbjct: 238 NIEESCATFATRALGLTTPLRTTHQIDNCTEG 269
>gi|449467613|ref|XP_004151517.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Cucumis
sativus]
Length = 475
Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 182/258 (70%), Positives = 206/258 (79%), Gaps = 13/258 (5%)
Query: 22 SLLRTLA----STHASCHRNIYKSNVVLSFSSSNRNFVCESWKRHVFTHTDTAAIAAATT 77
SLLRTLA S A+ R+ + S S + F C+S + TD + AT
Sbjct: 20 SLLRTLARPRASLSAASSRDYFAPR--RSLGSKSSAFPCKS------SITDVT-VKTATN 70
Query: 78 PSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVY 137
+ GYP+YHRLLPCPS + PPRVEH+VV E GPV+EYIC+ LNLPPL+VADLIHFGAVY
Sbjct: 71 SAENGYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLPPLYVADLIHFGAVY 130
Query: 138 YALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGT 197
YALVCP+PP TATPEQ+R+FK+ T+PS L R SIKGKTVREAQKTFRITHVD+ VE GT
Sbjct: 131 YALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKTFRITHVDEFVEVGT 190
Query: 198 YLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL 257
YLRVHVHPKRFPRCY+IDW SRIIAVTES+VVLDKPAGTSVGGTTDNIEESCATFA+RAL
Sbjct: 191 YLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFATRAL 250
Query: 258 GLTTPLRTTHQIDNCTEG 275
GLT+PL TTHQIDNCTEG
Sbjct: 251 GLTSPLWTTHQIDNCTEG 268
>gi|449488468|ref|XP_004158048.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 6,
chloroplastic-like [Cucumis sativus]
Length = 475
Score = 360 bits (925), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 182/258 (70%), Positives = 205/258 (79%), Gaps = 13/258 (5%)
Query: 22 SLLRTLA----STHASCHRNIYKSNVVLSFSSSNRNFVCESWKRHVFTHTDTAAIAAATT 77
SLLRTLA S A+ R+ + S S + F C+S + TD + AT
Sbjct: 20 SLLRTLARPRASLSAASSRDYFAPRC--SLGSKSSAFPCKS------SITDVT-VKTATN 70
Query: 78 PSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVY 137
+ GYP+YHRLLPCPS + PPRVEH+VV E GPV+EYIC+ LNLPPL+VADLIHFGAVY
Sbjct: 71 SAENGYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLPPLYVADLIHFGAVY 130
Query: 138 YALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGT 197
YALVCP+PP TATPEQ+R+FK T+PS L R SIKGKTVREAQKTFRITHVD+ VE GT
Sbjct: 131 YALVCPQPPKTATPEQIRLFKNXTEPSFLKGRKSIKGKTVREAQKTFRITHVDEFVEVGT 190
Query: 198 YLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL 257
YLRVHVHPKRFPRCY+IDW SRIIAVTES+VVLDKPAGTSVGGTTDNIEESCATFA+RAL
Sbjct: 191 YLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFATRAL 250
Query: 258 GLTTPLRTTHQIDNCTEG 275
GLT+PL TTHQIDNCTEG
Sbjct: 251 GLTSPLWTTHQIDNCTEG 268
>gi|356546416|ref|XP_003541622.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Glycine
max]
Length = 473
Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 179/280 (63%), Positives = 207/280 (73%), Gaps = 26/280 (9%)
Query: 7 SSIFTNNGRSLGAP-----VSLLRTLASTHASCH------RNIYKSNVVLSFSSSNRNFV 55
S +F R L P + + R S+H + H R+ + SN L+ +
Sbjct: 5 SMLFAGGCRILAVPAAARAIRIPRAALSSHHNKHAPSWGCRSSHNSNTALAGEAE----- 59
Query: 56 CESWKRHVFTHTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEY 115
F+ TD + A T SS +P+Y RLLPCPS PPR+EHLV+SEGGPVLE
Sbjct: 60 --------FSTTDAGNLTA--TSSSDSFPKYDRLLPCPSHKNPPRIEHLVISEGGPVLEL 109
Query: 116 ICRELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGK 175
IC+ L+LPPL+V+DLI FGAVYYALVCP+PP AT EQ+RVFKEVT+PSVL KR+SIKGK
Sbjct: 110 ICKALDLPPLYVSDLIQFGAVYYALVCPQPPPNATEEQIRVFKEVTEPSVLRKRASIKGK 169
Query: 176 TVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAG 235
TVREAQKTFR+THVDQ VE GTYLRVHVHPKRFPR Y+IDW SRIIAV ES+VVLDKPAG
Sbjct: 170 TVREAQKTFRVTHVDQFVEPGTYLRVHVHPKRFPRSYEIDWRSRIIAVAESYVVLDKPAG 229
Query: 236 TSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
TSVGGTTDNIEESCATFA+RALG+TTPL TTHQIDNCTEG
Sbjct: 230 TSVGGTTDNIEESCATFATRALGMTTPLMTTHQIDNCTEG 269
>gi|449471733|ref|XP_004153393.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like, partial
[Cucumis sativus]
Length = 287
Score = 347 bits (891), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 170/260 (65%), Positives = 204/260 (78%), Gaps = 8/260 (3%)
Query: 16 SLGAPVSLLRTLASTHASCHRNIYKSNVVLSFSSSNRNFVCESWKRHVFTHTDTAAIAAA 75
SL P + RT A+ AS + + + SFS +++ F CES + TD A
Sbjct: 17 SLNLPREVARTRANLSASISSTCFAA--LRSFSFNSKAFPCES------STTDVNVTQTA 68
Query: 76 TTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGA 135
T + GYP+YHRLLPC S N PPRVEHLVV EGGPV+EYI + L+LPP++VADLIHFGA
Sbjct: 69 TNSAENGYPQYHRLLPCTSFNVPPRVEHLVVLEGGPVMEYISKSLDLPPMYVADLIHFGA 128
Query: 136 VYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEA 195
VYYALVCP+PP TA+ E++R+FK+ T PS L R SIKGKT+REAQKTFRITH+D+ VE
Sbjct: 129 VYYALVCPQPPPTASSEEIRLFKKFTQPSFLIGRKSIKGKTLREAQKTFRITHIDEFVEV 188
Query: 196 GTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASR 255
GTYLRV+VHPKRFPRCY++DW SRIIAVT+S+VVLDKPAGTSVGGTT+NIEE+C TFA+R
Sbjct: 189 GTYLRVYVHPKRFPRCYEVDWKSRIIAVTDSYVVLDKPAGTSVGGTTNNIEETCVTFATR 248
Query: 256 ALGLTTPLRTTHQIDNCTEG 275
ALGLT+PL TTHQIDNCTEG
Sbjct: 249 ALGLTSPLWTTHQIDNCTEG 268
>gi|449454720|ref|XP_004145102.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Cucumis
sativus]
Length = 475
Score = 347 bits (890), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 170/260 (65%), Positives = 204/260 (78%), Gaps = 8/260 (3%)
Query: 16 SLGAPVSLLRTLASTHASCHRNIYKSNVVLSFSSSNRNFVCESWKRHVFTHTDTAAIAAA 75
SL P + RT A+ AS + + + SFS +++ F CES + TD A
Sbjct: 17 SLNLPREVARTRANLSASISSTCFAA--LRSFSFNSKAFPCES------STTDVNVTQTA 68
Query: 76 TTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGA 135
T + GYP+YHRLLPC S N PPRVEHLVV EGGPV+EYI + L+LPP++VADLIHFGA
Sbjct: 69 TNSAENGYPQYHRLLPCTSFNVPPRVEHLVVLEGGPVMEYISKSLDLPPMYVADLIHFGA 128
Query: 136 VYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEA 195
VYYALVCP+PP TA+ E++R+FK+ T PS L R SIKGKT+REAQKTFRITH+D+ VE
Sbjct: 129 VYYALVCPQPPPTASSEEIRLFKKFTQPSFLIGRKSIKGKTLREAQKTFRITHIDEFVEV 188
Query: 196 GTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASR 255
GTYLRV+VHPKRFPRCY++DW SRIIAVT+S+VVLDKPAGTSVGGTT+NIEE+C TFA+R
Sbjct: 189 GTYLRVYVHPKRFPRCYEVDWKSRIIAVTDSYVVLDKPAGTSVGGTTNNIEETCVTFATR 248
Query: 256 ALGLTTPLRTTHQIDNCTEG 275
ALGLT+PL TTHQIDNCTEG
Sbjct: 249 ALGLTSPLWTTHQIDNCTEG 268
>gi|449488373|ref|XP_004158017.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Cucumis
sativus]
Length = 475
Score = 347 bits (890), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 170/260 (65%), Positives = 204/260 (78%), Gaps = 8/260 (3%)
Query: 16 SLGAPVSLLRTLASTHASCHRNIYKSNVVLSFSSSNRNFVCESWKRHVFTHTDTAAIAAA 75
SL P + RT A+ AS + + + SFS +++ F CES + TD A
Sbjct: 17 SLNLPREVARTRANLSASISSTCFAA--LRSFSFNSKAFPCES------STTDVNVTQTA 68
Query: 76 TTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGA 135
T + GYP+YHRLLPC S N PPRVEHLVV EGGPV+EYI + L+LPP++VADLIHFGA
Sbjct: 69 TNSAENGYPQYHRLLPCTSFNVPPRVEHLVVLEGGPVMEYISKSLDLPPMYVADLIHFGA 128
Query: 136 VYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEA 195
VYYALVCP+PP TA+ E++R+FK+ T PS L R SIKGKT+REAQKTFRITH+D+ VE
Sbjct: 129 VYYALVCPQPPPTASSEEIRLFKKFTQPSFLIGRKSIKGKTLREAQKTFRITHIDEFVEV 188
Query: 196 GTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASR 255
GTYLRV+VHPKRFPRCY++DW SRIIAVT+S+VVLDKPAGTSVGGTT+NIEE+C TFA+R
Sbjct: 189 GTYLRVYVHPKRFPRCYEVDWKSRIIAVTDSYVVLDKPAGTSVGGTTNNIEETCVTFATR 248
Query: 256 ALGLTTPLRTTHQIDNCTEG 275
ALGLT+PL TTHQIDNCTEG
Sbjct: 249 ALGLTSPLWTTHQIDNCTEG 268
>gi|356557901|ref|XP_003547248.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Glycine
max]
Length = 473
Score = 344 bits (883), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 180/272 (66%), Positives = 207/272 (76%), Gaps = 10/272 (3%)
Query: 7 SSIFTNNGRSLGAPVSLLRTLASTHASCHRNIYK---SNVVLSFSSSNRNFVCESWKRHV 63
S +F+ + RSL P + R + + A+ N K S S +SN E+
Sbjct: 5 SMLFSGSCRSLAMPAAA-RAVRISRAALVNNRNKHPPSWCCRSSHNSNTALAGEA----E 59
Query: 64 FTHTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLP 123
F TD + A T SS + +Y RLLPCPS PPR+EHLVVSEGGPVLE+IC+ L+LP
Sbjct: 60 FLTTDAGILNA--TSSSDSFRKYDRLLPCPSHKTPPRIEHLVVSEGGPVLEHICKALDLP 117
Query: 124 PLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKT 183
PL+V+DLI FGAVYYALVCP+PP AT EQ+RVFKEVT+PSVL KR+SIKGKTVREAQKT
Sbjct: 118 PLYVSDLIQFGAVYYALVCPQPPPNATEEQIRVFKEVTEPSVLRKRASIKGKTVREAQKT 177
Query: 184 FRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTD 243
FR+THVDQ VE GTYLRVHVHPKR PRCY+IDW SRII V ES+VVLDKPAGTSVGGTTD
Sbjct: 178 FRVTHVDQFVEPGTYLRVHVHPKRSPRCYEIDWRSRIITVAESYVVLDKPAGTSVGGTTD 237
Query: 244 NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
NIEESCATFA+RALG+TTPL TTHQIDNCTEG
Sbjct: 238 NIEESCATFATRALGMTTPLMTTHQIDNCTEG 269
>gi|297799888|ref|XP_002867828.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297313664|gb|EFH44087.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 476
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 175/273 (64%), Positives = 211/273 (77%), Gaps = 9/273 (3%)
Query: 7 SSIFTNNGRSLGAPVSLLRTLASTHASC---HRNIYKSNVVLSFSSSNRNFVCESWKRHV 63
S T R+L APVSLLRTLAST + N Y+ + F SS + F C S +
Sbjct: 3 SPALTGGYRNLTAPVSLLRTLASTCITTTLFRTNKYQYKIPPRFISSPKRFTCLSLHK-- 60
Query: 64 FTHTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVL-EYICRELNL 122
TD+ ++ S+ GYPEY+RL+PCP+ N PPR+EH+VV E ++ E+I ++L+L
Sbjct: 61 ---TDSQNQTTLSSSSTSGYPEYNRLMPCPAHNLPPRIEHMVVLEDDVLVSEFISKQLDL 117
Query: 123 PPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQK 182
PPL+V+DLI FGAV+YALVCPKPP TATPEQ+ +F+EVT PSVL KRSSIKGKTVREAQK
Sbjct: 118 PPLYVSDLIRFGAVHYALVCPKPPPTATPEQIELFEEVTCPSVLKKRSSIKGKTVREAQK 177
Query: 183 TFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTT 242
TFR+TH +Q EAGTYLRVHVHPKR PRCY+IDW SRI+AVT+S+V+LDKPAGT+VGGTT
Sbjct: 178 TFRVTHTNQYAEAGTYLRVHVHPKRSPRCYEIDWKSRIVAVTDSYVILDKPAGTTVGGTT 237
Query: 243 DNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
DNIEESCATFASRAL L PL+TTHQIDNCTEG
Sbjct: 238 DNIEESCATFASRALDLPEPLKTTHQIDNCTEG 270
>gi|15234586|ref|NP_193908.1| RNA pseudourine synthase 6 [Arabidopsis thaliana]
gi|75212600|sp|Q9SVS0.1|PUS6_ARATH RecName: Full=RNA pseudourine synthase 6, chloroplastic; AltName:
Full=RNA pseudouridylate synthase 6; AltName:
Full=RNA-uridine isomerase 6; Flags: Precursor
gi|4455285|emb|CAB36821.1| hypothetical protein [Arabidopsis thaliana]
gi|7268974|emb|CAB81284.1| hypothetical protein [Arabidopsis thaliana]
gi|23296381|gb|AAN13057.1| unknown protein [Arabidopsis thaliana]
gi|110741616|dbj|BAE98756.1| hypothetical protein [Arabidopsis thaliana]
gi|332659101|gb|AEE84501.1| RNA pseudourine synthase 6 [Arabidopsis thaliana]
Length = 472
Score = 339 bits (870), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 174/271 (64%), Positives = 210/271 (77%), Gaps = 9/271 (3%)
Query: 7 SSIFTNNGRSLGAPVSLLRTLASTHASCHRNIYKSNV-VLSFSSSNRNFVCESWKRHVFT 65
S T R+L APVSLLRTLAST + +++SN F SS + F C S
Sbjct: 3 SPALTGGYRNLTAPVSLLRTLASTRVTT--PLFRSNKHSPRFISSPKRFTCLS-----LL 55
Query: 66 HTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVL-EYICRELNLPP 124
TD+ ++ S+ GY EY+RL+PCP+ N PPR+EH+VV E ++ E+I ++L+LPP
Sbjct: 56 KTDSQNQTTLSSSSNSGYHEYNRLMPCPAYNLPPRIEHMVVLEDDVLVSEFISKQLDLPP 115
Query: 125 LFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTF 184
L+VADLI FGAV+YALVCPKPP TATPE++ +F+EVT PSVL KRSSIKGKTVREAQKTF
Sbjct: 116 LYVADLIRFGAVHYALVCPKPPPTATPEEIILFEEVTSPSVLKKRSSIKGKTVREAQKTF 175
Query: 185 RITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN 244
R+TH +Q EAGTYLRVHVHPKR PRCY+IDW SRI+AVT+S+V+LDKPAGT+VGGTTDN
Sbjct: 176 RVTHTNQYAEAGTYLRVHVHPKRSPRCYEIDWKSRIVAVTDSYVILDKPAGTTVGGTTDN 235
Query: 245 IEESCATFASRALGLTTPLRTTHQIDNCTEG 275
IEESCATFASRAL L PL+TTHQIDNCTEG
Sbjct: 236 IEESCATFASRALDLPEPLKTTHQIDNCTEG 266
>gi|255554953|ref|XP_002518514.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
gi|223542359|gb|EEF43901.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
Length = 395
Score = 329 bits (844), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 155/190 (81%), Positives = 175/190 (92%)
Query: 86 YHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKP 145
Y RLLPCPSQN PPRVEHLVV E GPVL+YIC+ L+LPPLFVADLIHFGAV+YALVCP+P
Sbjct: 3 YDRLLPCPSQNRPPRVEHLVVLEEGPVLDYICKALDLPPLFVADLIHFGAVHYALVCPQP 62
Query: 146 PLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHP 205
P TATPEQ+R+F+E T PSVL KR+SIKGKTVREAQKTFR++ V Q +E GTYLRV+VHP
Sbjct: 63 PPTATPEQIRLFEEFTAPSVLKKRASIKGKTVREAQKTFRVSSVHQFLEVGTYLRVYVHP 122
Query: 206 KRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT 265
+RFPRCY+IDW SRIIAVTES+VVLDKPAGTSVGGTT+NIEE+CATFA+RALGLT PL+T
Sbjct: 123 RRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTNNIEETCATFATRALGLTIPLKT 182
Query: 266 THQIDNCTEG 275
THQIDNCTEG
Sbjct: 183 THQIDNCTEG 192
>gi|357511989|ref|XP_003626283.1| RNA pseudourine synthase [Medicago truncatula]
gi|355501298|gb|AES82501.1| RNA pseudourine synthase [Medicago truncatula]
Length = 462
Score = 320 bits (820), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 154/208 (74%), Positives = 176/208 (84%), Gaps = 5/208 (2%)
Query: 68 DTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFV 127
D+ AI+ T YP+Y RLLPCPS PPR+EHLVVS+ GPVL+YIC+ L+LP LFV
Sbjct: 47 DSNAISETVT-----YPKYDRLLPCPSHKIPPRIEHLVVSQEGPVLQYICKALDLPHLFV 101
Query: 128 ADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRIT 187
ADLI FGAVY+ALV P+PP TAT EQ+R+F++VT+P VL KRSS+KGKT+REAQKTFR+T
Sbjct: 102 ADLIQFGAVYFALVSPEPPPTATAEQIRIFEQVTEPLVLQKRSSLKGKTIREAQKTFRVT 161
Query: 188 HVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEE 247
+Q VE GTYLRVHVHPKRFPRCY+IDW SRIIAV ES+VVLDKPAGTSVG TT NIEE
Sbjct: 162 DANQFVEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVGETTGNIEE 221
Query: 248 SCATFASRALGLTTPLRTTHQIDNCTEG 275
SC TFA+RALGLTTPL TTHQIDNCTEG
Sbjct: 222 SCVTFATRALGLTTPLITTHQIDNCTEG 249
>gi|242051172|ref|XP_002463330.1| hypothetical protein SORBIDRAFT_02g041930 [Sorghum bicolor]
gi|241926707|gb|EER99851.1| hypothetical protein SORBIDRAFT_02g041930 [Sorghum bicolor]
Length = 480
Score = 297 bits (760), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 137/193 (70%), Positives = 159/193 (82%)
Query: 83 YPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVC 142
YP Y RLLPCP Q+ PPR+EHLV E ++I R L LPPL+ ADLI FGAVYYALV
Sbjct: 74 YPVYDRLLPCPLQDDPPRIEHLVAREDEVAADFISRSLGLPPLYAADLIKFGAVYYALVA 133
Query: 143 PKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVH 202
P+PP A+PE ++F+EVT+PS+L +R+SIKGKTVREAQKTFR+T DQ +EAGTYLRVH
Sbjct: 134 PQPPPYASPEHFKIFREVTEPSILRRRASIKGKTVREAQKTFRVTDPDQRLEAGTYLRVH 193
Query: 203 VHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP 262
VHPKRFPRCY+IDW SR+IAV + +VVLDKPA TSVGG TDNIEESCA F SRALG+ TP
Sbjct: 194 VHPKRFPRCYEIDWKSRVIAVADEYVVLDKPAATSVGGATDNIEESCAVFTSRALGMETP 253
Query: 263 LRTTHQIDNCTEG 275
L TTHQIDNC+EG
Sbjct: 254 LLTTHQIDNCSEG 266
>gi|414591093|tpg|DAA41664.1| TPA: hypothetical protein ZEAMMB73_582506 [Zea mays]
Length = 474
Score = 296 bits (758), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 139/193 (72%), Positives = 158/193 (81%)
Query: 83 YPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVC 142
YP Y RLLPCP Q+ PPR+EHLV E ++I R L LPPL+ ADLI FGAVYYALV
Sbjct: 72 YPVYDRLLPCPLQDDPPRIEHLVAREDEVAADFIARSLGLPPLYAADLIEFGAVYYALVA 131
Query: 143 PKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVH 202
P+PP A+PE R+F+EVT+PSVL +R+SIKGKTVREAQKTFR+T +Q +EAGTYLRVH
Sbjct: 132 PQPPPYASPEHFRLFREVTEPSVLRRRASIKGKTVREAQKTFRVTDPNQRLEAGTYLRVH 191
Query: 203 VHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP 262
VHPKRFPRCY IDW SR+IAV + +VVLDKPA TSVGG TDNIEESCA F SRALGL TP
Sbjct: 192 VHPKRFPRCYQIDWKSRVIAVADEYVVLDKPAATSVGGATDNIEESCAVFTSRALGLETP 251
Query: 263 LRTTHQIDNCTEG 275
L TTHQIDNC+EG
Sbjct: 252 LLTTHQIDNCSEG 264
>gi|125559481|gb|EAZ05017.1| hypothetical protein OsI_27198 [Oryza sativa Indica Group]
Length = 333
Score = 292 bits (748), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 142/199 (71%), Positives = 165/199 (82%)
Query: 78 PSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVY 137
P++ YP Y RLLPCP Q+ PPR+EHLV E +++I R L LPPL+VADLI FGAVY
Sbjct: 66 PATAAYPVYGRLLPCPLQDDPPRIEHLVAREDEVAVDFISRSLTLPPLYVADLIKFGAVY 125
Query: 138 YALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGT 197
YALV P+PP A PE +R+F+EVT+PSVL +R SIKGKTVREAQKTFR+T +Q +EAGT
Sbjct: 126 YALVAPQPPPHAAPEHVRIFREVTEPSVLCRRKSIKGKTVREAQKTFRVTDPNQRLEAGT 185
Query: 198 YLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL 257
YLRVHVHPKRFPRCY+IDW SR+IAVT+++VVLDKPA TSVGG TDNIEESC F SRAL
Sbjct: 186 YLRVHVHPKRFPRCYEIDWKSRVIAVTDNYVVLDKPAATSVGGATDNIEESCVVFTSRAL 245
Query: 258 GLTTPLRTTHQIDNCTEGW 276
GL TPL TTHQIDNC+EGW
Sbjct: 246 GLETPLMTTHQIDNCSEGW 264
>gi|226724674|sp|A3BN26.1|PUS6_ORYSJ RecName: Full=RNA pseudourine synthase 6, chloroplastic; AltName:
Full=RNA pseudouridylate synthase 6; AltName:
Full=RNA-uridine isomerase 6; Flags: Precursor
gi|125601389|gb|EAZ40965.1| hypothetical protein OsJ_25447 [Oryza sativa Japonica Group]
Length = 477
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 141/198 (71%), Positives = 164/198 (82%)
Query: 78 PSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVY 137
P++ YP Y RLLPCP Q+ PPR+EHLV E +++I R L LPPL+VADLI FGAVY
Sbjct: 66 PATAAYPVYGRLLPCPLQDDPPRIEHLVAREDEVAVDFISRSLTLPPLYVADLIKFGAVY 125
Query: 138 YALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGT 197
YALV P+PP A PE +R+F+EVT+PSVL +R SIKGKTVREAQKTFR+T +Q +EAGT
Sbjct: 126 YALVAPQPPPHAAPEHVRIFREVTEPSVLCRRKSIKGKTVREAQKTFRVTDPNQRLEAGT 185
Query: 198 YLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL 257
YLRVHVHPKRFPRCY+IDW SR+IAVT+++VVLDKPA TSVGG TDNIEESC F SRAL
Sbjct: 186 YLRVHVHPKRFPRCYEIDWKSRVIAVTDNYVVLDKPAATSVGGATDNIEESCVVFTSRAL 245
Query: 258 GLTTPLRTTHQIDNCTEG 275
GL TPL TTHQIDNC+EG
Sbjct: 246 GLETPLMTTHQIDNCSEG 263
>gi|357116152|ref|XP_003559847.1| PREDICTED: uncharacterized protein LOC100824239 [Brachypodium
distachyon]
Length = 986
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 136/193 (70%), Positives = 160/193 (82%)
Query: 83 YPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVC 142
YP Y R+LPCP+Q+ PPR+EHLV E ++I R L LPPL+VADLI FGAVYYALV
Sbjct: 580 YPAYDRILPCPAQDDPPRIEHLVAREDEAAGDFISRSLGLPPLYVADLIKFGAVYYALVA 639
Query: 143 PKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVH 202
P+PP A PE +R+F+EVT+PSVL +R+SIKGKTVREAQKTFR+T Q +EAGTYLRVH
Sbjct: 640 PQPPPYAAPEHVRIFREVTEPSVLRRRASIKGKTVREAQKTFRVTDPGQHLEAGTYLRVH 699
Query: 203 VHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP 262
VHPKRFPRCY IDW SR+IAVT+++VVL+KPA TSVGG TDNIEESC F SRALG+ +P
Sbjct: 700 VHPKRFPRCYQIDWKSRVIAVTDNYVVLNKPAATSVGGATDNIEESCVVFTSRALGVDSP 759
Query: 263 LRTTHQIDNCTEG 275
L TTHQIDNC+EG
Sbjct: 760 LMTTHQIDNCSEG 772
>gi|147833193|emb|CAN68642.1| hypothetical protein VITISV_030809 [Vitis vinifera]
Length = 400
Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 149/234 (63%), Positives = 169/234 (72%), Gaps = 36/234 (15%)
Query: 7 SSIFTNNGRSLGAPVSLLRTLASTHASCHRN---IYKSNVVLSFSSSNRNFVCESWKRHV 63
SS++ +N RS G PV+L RTLAS++ R+ ++ SN N C
Sbjct: 16 SSLWNSNCRSFGTPVALARTLASSNVFSRRHKRVVWCSN----------NPTC------- 58
Query: 64 FTHTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLP 123
T TA+ +A T S GYPEYHRLLPCPSQN PPRVEHLVVSEGG
Sbjct: 59 -TRELTASSDSANTSSVNGYPEYHRLLPCPSQNGPPRVEHLVVSEGG------------- 104
Query: 124 PLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKT 183
FVADLIHFGAVYYALVCP+PP +ATPEQ+R+FKEVT PSVL KR SIKGKT+REAQKT
Sbjct: 105 --FVADLIHFGAVYYALVCPEPPPSATPEQVRLFKEVTAPSVLRKRPSIKGKTIREAQKT 162
Query: 184 FRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTS 237
FRIT V++ VEAGTYLRVHVHPKRFPRCY+IDW SRIIAVTES+VVLDKPAGTS
Sbjct: 163 FRITDVNEFVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTS 216
>gi|168054605|ref|XP_001779721.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668919|gb|EDQ55517.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 401
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 115/192 (59%), Positives = 144/192 (75%), Gaps = 2/192 (1%)
Query: 86 YHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKP 145
Y RL+PCP+ + P RVEHL++ + G +++ IC EL+LPPL+V DLI FGAV+YAL CP P
Sbjct: 8 YDRLMPCPNYSLPARVEHLLIEKDGNIVDIICEELSLPPLYVVDLISFGAVFYALECPTP 67
Query: 146 PLTATPEQMRVFKEVTD--PSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHV 203
P A+PEQ+ ++ S +R S+KGKT++EAQKTFRI + +E+GTYLRVHV
Sbjct: 68 PPHASPEQLELYNRQVKLRASRKKERLSLKGKTLKEAQKTFRIASPSEYIESGTYLRVHV 127
Query: 204 HPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPL 263
HPKR PR Y++DW SR+IA T+S VV+DKPAG SVGGT DN+EE CATF SRAL L PL
Sbjct: 128 HPKRGPRVYEVDWLSRVIAETDSFVVVDKPAGVSVGGTVDNLEEMCATFVSRALKLKKPL 187
Query: 264 RTTHQIDNCTEG 275
THQID CTEG
Sbjct: 188 ILTHQIDTCTEG 199
>gi|116793412|gb|ABK26738.1| unknown [Picea sitchensis]
Length = 292
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 115/168 (68%), Positives = 141/168 (83%), Gaps = 1/168 (0%)
Query: 71 AIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADL 130
AI+ A+ P++ YPEY+RLLPCPSQ+ R+EHLV+ E G V++ IC+ LN P L+VADL
Sbjct: 116 AISTASLPTT-RYPEYNRLLPCPSQSQSSRIEHLVMEETGNVVDLICQALNFPHLYVADL 174
Query: 131 IHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVD 190
IHFGAVY ALVCP PP TAT EQ+++FK+VT P+ L KR+S+KGKTVREAQKTFRIT+
Sbjct: 175 IHFGAVYCALVCPTPPPTATAEQVKIFKKVTAPAALKKRASLKGKTVREAQKTFRITNAS 234
Query: 191 QIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV 238
+ VEAG+YLRVHVHPKRFPRCY++DW SR+IA TES+VVLDKP GTSV
Sbjct: 235 EYVEAGSYLRVHVHPKRFPRCYEVDWLSRVIAETESYVVLDKPVGTSV 282
>gi|414591092|tpg|DAA41663.1| TPA: hypothetical protein ZEAMMB73_582506 [Zea mays]
Length = 232
Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 107/155 (69%), Positives = 125/155 (80%)
Query: 83 YPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVC 142
YP Y RLLPCP Q+ PPR+EHLV E ++I R L LPPL+ ADLI FGAVYYALV
Sbjct: 72 YPVYDRLLPCPLQDDPPRIEHLVAREDEVAADFIARSLGLPPLYAADLIEFGAVYYALVA 131
Query: 143 PKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVH 202
P+PP A+PE R+F+EVT+PSVL +R+SIKGKTVREAQKTFR+T +Q +EAGTYLRVH
Sbjct: 132 PQPPPYASPEHFRLFREVTEPSVLRRRASIKGKTVREAQKTFRVTDPNQRLEAGTYLRVH 191
Query: 203 VHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTS 237
VHPKRFPRCY IDW SR+IAV + +VVLDKPA TS
Sbjct: 192 VHPKRFPRCYQIDWKSRVIAVADEYVVLDKPAATS 226
>gi|115473865|ref|NP_001060531.1| Os07g0660400 [Oryza sativa Japonica Group]
gi|34395182|dbj|BAC83571.1| unknown protein [Oryza sativa Japonica Group]
gi|113612067|dbj|BAF22445.1| Os07g0660400 [Oryza sativa Japonica Group]
Length = 400
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/146 (76%), Positives = 127/146 (86%)
Query: 130 LIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHV 189
LI FGAVYYALV P+PP A PE +R+F+EVT+PSVL +R SIKGKTVREAQKTFR+T
Sbjct: 41 LIKFGAVYYALVAPQPPPHAAPEHVRIFREVTEPSVLCRRKSIKGKTVREAQKTFRVTDP 100
Query: 190 DQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESC 249
+Q +EAGTYLRVHVHPKRFPRCY+IDW SR+IAVT+++VVLDKPA TSVGG TDNIEESC
Sbjct: 101 NQRLEAGTYLRVHVHPKRFPRCYEIDWKSRVIAVTDNYVVLDKPAATSVGGATDNIEESC 160
Query: 250 ATFASRALGLTTPLRTTHQIDNCTEG 275
F SRALGL TPL TTHQIDNC+EG
Sbjct: 161 VVFTSRALGLETPLMTTHQIDNCSEG 186
>gi|302796789|ref|XP_002980156.1| hypothetical protein SELMODRAFT_112010 [Selaginella moellendorffii]
gi|300152383|gb|EFJ19026.1| hypothetical protein SELMODRAFT_112010 [Selaginella moellendorffii]
Length = 415
Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 107/190 (56%), Positives = 137/190 (72%), Gaps = 4/190 (2%)
Query: 86 YHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKP 145
Y RLLPCPS PR+EHL+V + G VL + L LP +VADL+ FGAV++AL CPKP
Sbjct: 1 YKRLLPCPSTQLGPRIEHLLVKKKGTVLSIVSEVLKLPSEYVADLMSFGAVHHALRCPKP 60
Query: 146 PLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHP 205
PL TP+Q+++FK+ + K + ++ EA+K R+T + E G+Y+RVHVHP
Sbjct: 61 PLNLTPQQVQLFKKASP----KKWPVLDRVSLVEARKPERVTDPNHYAEPGSYIRVHVHP 116
Query: 206 KRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT 265
KRFPRCY++DW SRIIA ES VVL+KPAG SVGG+ DN+EE C+TFA+RAL L PL T
Sbjct: 117 KRFPRCYEVDWRSRIIANEESFVVLNKPAGVSVGGSVDNVEEICSTFATRALNLEQPLVT 176
Query: 266 THQIDNCTEG 275
THQ+DNCTEG
Sbjct: 177 THQLDNCTEG 186
>gi|302822493|ref|XP_002992904.1| hypothetical protein SELMODRAFT_136149 [Selaginella moellendorffii]
gi|300139249|gb|EFJ05993.1| hypothetical protein SELMODRAFT_136149 [Selaginella moellendorffii]
Length = 415
Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 107/190 (56%), Positives = 137/190 (72%), Gaps = 4/190 (2%)
Query: 86 YHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKP 145
Y RLLPCPS PR+EHL+V + G VL + L LP +VADL+ FGAV++AL CPKP
Sbjct: 1 YKRLLPCPSTQLGPRIEHLLVKKKGTVLSIVSEVLKLPSEYVADLMSFGAVHHALRCPKP 60
Query: 146 PLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHP 205
PL TP+Q+++FK+ + K + ++ EA+K R+T + E G+Y+RVHVHP
Sbjct: 61 PLNLTPQQVQLFKKASP----KKWPVLDRVSLVEARKPERVTDPNHYAEPGSYIRVHVHP 116
Query: 206 KRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT 265
KRFPRCY++DW SRIIA ES VVL+KPAG SVGG+ DN+EE C+TFA+RAL L PL T
Sbjct: 117 KRFPRCYEVDWRSRIIANEESFVVLNKPAGVSVGGSVDNVEEICSTFATRALNLEQPLVT 176
Query: 266 THQIDNCTEG 275
THQ+DNCTEG
Sbjct: 177 THQLDNCTEG 186
>gi|302822543|ref|XP_002992929.1| hypothetical protein SELMODRAFT_136180 [Selaginella moellendorffii]
gi|300139274|gb|EFJ06018.1| hypothetical protein SELMODRAFT_136180 [Selaginella moellendorffii]
Length = 428
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 109/211 (51%), Positives = 138/211 (65%), Gaps = 25/211 (11%)
Query: 86 YHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKP 145
Y RLLPCP + P R+EHL V + G V++Y+C+ L+LP L+V DLI FGAVY+AL C +P
Sbjct: 1 YDRLLPCPGDDLPVRIEHLFVEKNGNVVDYLCQALSLPSLYVNDLIEFGAVYHALRCSEP 60
Query: 146 PLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHP 205
P TA E M +K ++ +KG +V+E+QK RI + VEAG+Y+RVHVHP
Sbjct: 61 PETAPKEHMEFYKR----ALAMDLPRVKGMSVQESQKARRIVSKHEEVEAGSYMRVHVHP 116
Query: 206 KRFPR---------------------CYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN 244
+RFPR CY++DW SRI+A + VVLDKPAG SVGG+ DN
Sbjct: 117 RRFPRQETLAGCFFSLVYTRVFFVVRCYEVDWKSRILAENDLFVVLDKPAGVSVGGSVDN 176
Query: 245 IEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+EESC TFASRALG+ PL THQIDNCTEG
Sbjct: 177 LEESCVTFASRALGMAFPLLVTHQIDNCTEG 207
>gi|302796533|ref|XP_002980028.1| hypothetical protein SELMODRAFT_111763 [Selaginella moellendorffii]
gi|300152255|gb|EFJ18898.1| hypothetical protein SELMODRAFT_111763 [Selaginella moellendorffii]
Length = 428
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 109/211 (51%), Positives = 138/211 (65%), Gaps = 25/211 (11%)
Query: 86 YHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKP 145
Y RLLPCP + P R+EHL V + G V++Y+C+ L+LP L+V DLI FGAVY+AL C +P
Sbjct: 1 YDRLLPCPGDDLPVRIEHLFVEKNGNVVDYLCQALSLPSLYVNDLIEFGAVYHALRCSEP 60
Query: 146 PLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHP 205
P TA E M +K ++ +KG +V+E+QK RI + VEAG+Y+RVHVHP
Sbjct: 61 PETAPKEHMEFYKR----ALAMDLPRVKGMSVQESQKARRIVSKHEEVEAGSYMRVHVHP 116
Query: 206 KRFPR---------------------CYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN 244
+RFPR CY++DW SRI+A + VVLDKPAG SVGG+ DN
Sbjct: 117 RRFPRQETLAGCFFSLVYTRVFFVVRCYEVDWKSRILAENDLFVVLDKPAGVSVGGSVDN 176
Query: 245 IEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+EESC TFASRALG+ PL THQIDNCTEG
Sbjct: 177 LEESCVTFASRALGMAFPLLVTHQIDNCTEG 207
>gi|384250670|gb|EIE24149.1| pseudouridine synthase [Coccomyxa subellipsoidea C-169]
Length = 457
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 89/176 (50%), Gaps = 43/176 (24%)
Query: 100 RVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKE 159
RVEH++V+E G + E + L+LP FV +LI FGAV++ CP P+ A P
Sbjct: 67 RVEHILVNEPGVLSEVVAAALDLPQDFVTELIRFGAVHW---CPVLPVKAGPP------- 116
Query: 160 VTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSR 219
VE Y+RVHVHPKRFP Y +DW +R
Sbjct: 117 ---------------------------------VEKYAYVRVHVHPKRFPSAYKVDWKAR 143
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
I+ VV++KPAG V T DNI ESC ++AL +PL +TH++D CTEG
Sbjct: 144 IVHAAPDFVVINKPAGVPVVPTVDNILESCLACTAQALDEASPLLSTHRLDTCTEG 199
>gi|303272809|ref|XP_003055766.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463740|gb|EEH61018.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 483
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 91/207 (43%), Gaps = 47/207 (22%)
Query: 100 RVEHLVVSEG--GPVLEYICRELNLPPL---FVADLIHFGAVYYALVCPKPPLTATPEQM 154
RV+H+V+ GP + L LP + + LI FGAVYY+ V P P A+
Sbjct: 51 RVKHVVLGPDAFGPAATIVASALGLPDVDARYARQLIEFGAVYYSDVPPPRPRAASGSGS 110
Query: 155 RVF-KEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYD 213
DPS +R + +++V G YLRVHVHPKRFP
Sbjct: 111 SSSTNNKRDPSATPQR----------------VKSANRVVHPGGYLRVHVHPKRFPAARA 154
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG--------------- 258
DW IIA ++ VV+DKPAG +VG T DN +E A +RALG
Sbjct: 155 TDWRRAIIAAGDAFVVVDKPAGVNVGFTVDNAKECVAQCVARALGDAFAENGSDSSSTDS 214
Query: 259 ----------LTTPLRTTHQIDNCTEG 275
TPL TH++D T G
Sbjct: 215 STECSSWGWADATPLIVTHRLDAATSG 241
>gi|145344926|ref|XP_001416975.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577201|gb|ABO95268.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 371
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 93/198 (46%), Gaps = 36/198 (18%)
Query: 88 RLLPCPSQNCPPRVEHLVVSEGGP------VLEYICRELN---LPPLFVADLIHFGAVYY 138
RL P ++ P +V HLVV + G V +Y+ + L + + +L+ GAV++
Sbjct: 9 RLFPL-AEPLPAKVAHLVVDDDGGTGTALTVTKYLAKTLGDEGVDETYAEELLDIGAVWF 67
Query: 139 ALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTY 198
A P L P R + LS R + D + AG Y
Sbjct: 68 ATAQPPRELRGVPRTARARR-------LSPRDA------------------DAPLRAGNY 102
Query: 199 LRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG 258
LRVHV PKRFP + +DW + ++ V E +V KPAG SV T DN++ESC RA G
Sbjct: 103 LRVHVQPKRFPAAFAVDWKACVLKVGEGYVCAHKPAGVSVVPTVDNVKESCLAMLERAAG 162
Query: 259 LTTP-LRTTHQIDNCTEG 275
L L+ H++D TEG
Sbjct: 163 LKEGTLKPIHRLDVGTEG 180
>gi|307111759|gb|EFN59993.1| hypothetical protein CHLNCDRAFT_56496 [Chlorella variabilis]
Length = 476
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 89/197 (45%), Gaps = 24/197 (12%)
Query: 100 RVEHLVVSEGGPVLEYICRELNLPPLFVAD---------------------LIHFGAVYY 138
RVEH++ G + E + L LP +D L+ FGA++
Sbjct: 29 RVEHVLAPRDGRLSELVTESLQLPQARGSDGLACCGPQHPHGKPFAGAAELLLRFGAIH- 87
Query: 139 ALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTY 198
CP P + ++ ++ +++ +T + D V Y
Sbjct: 88 --TCPVAPTLPASILASMSQQQAAQVQRRRQEALQRAGNSSQARTPQRAAADAEVARHAY 145
Query: 199 LRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG 258
+RVH+HPKRFP Y +DW R++A TE + V+ KPAG T DN E A++ALG
Sbjct: 146 IRVHLHPKRFPAAYSVDWLDRLVASTEEYAVVSKPAGVPAAPTVDNWLECAPACAAQALG 205
Query: 259 LTTPLRTTHQIDNCTEG 275
L PL TH++D CTEG
Sbjct: 206 LPQPLLITHRLDQCTEG 222
>gi|255071535|ref|XP_002499442.1| predicted protein [Micromonas sp. RCC299]
gi|226514704|gb|ACO60700.1| predicted protein [Micromonas sp. RCC299]
Length = 474
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 73/162 (45%), Gaps = 34/162 (20%)
Query: 101 VEHLVVSEGGPVLEYICREL---NLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVF 157
VEH+++ GG + + + ++ V L+ GAVY A V P
Sbjct: 62 VEHVILDAGGLIAAVLPAHIPGDDVDETTVTQLVRIGAVYAADVPPP------------- 108
Query: 158 KEVTDPSVLSKRSSIKGKT-VREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDW 216
K KT VR + + R+ D+ + G Y+RVHVHPKRFP DW
Sbjct: 109 ---------------KDKTGVRRSLRPARVNSPDRALPNGAYVRVHVHPKRFPAAVACDW 153
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATF-ASRAL 257
RIIA V +DKP G G + DN E CAT+ +RAL
Sbjct: 154 GGRIIARGRDWVAVDKPPGVPAGPSLDNATE-CATYRVARAL 194
>gi|302836900|ref|XP_002950010.1| hypothetical protein VOLCADRAFT_90418 [Volvox carteri f.
nagariensis]
gi|300264919|gb|EFJ49113.1| hypothetical protein VOLCADRAFT_90418 [Volvox carteri f.
nagariensis]
Length = 421
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 192 IVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCAT 251
+V G Y+RVH PKR+P CY DW R++ +VV++KPAG N E A+
Sbjct: 115 VVPRGHYVRVHPRPKRYPACYCADWPRRVLHCDSDYVVVNKPAGLPCMRHESNALEELAS 174
Query: 252 FASRALGLTTPLRTTHQIDNCTEG 275
RALG+ L H++D T G
Sbjct: 175 CVGRALGMEG-LEVCHRLDQWTTG 197
>gi|299115628|emb|CBN75829.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 505
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 196 GTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASR 255
G YLRVH P+ FP +DW+ RI+ E VV+DKPAG T DN ++C AS
Sbjct: 151 GAYLRVHCDPRTFPASQVMDWSKRIVHKNEDFVVVDKPAGVPTVPTIDNGVQNCVFQASL 210
Query: 256 ALG--------LTTPLRTTHQIDNCTEG 275
A+ L PL ++D CT G
Sbjct: 211 AVAGMPPGSRSLPPPLHAVSRLDVCTSG 238
>gi|428181430|gb|EKX50294.1| hypothetical protein GUITHDRAFT_104105 [Guillardia theta CCMP2712]
Length = 296
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 32/162 (19%)
Query: 114 EYICRELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIK 173
+ I E + V +L+ FGAVY PP A + K+S +K
Sbjct: 9 KVIMEETGMDGKLVKELVKFGAVYTG-----PPQDAMDK---------------KQSPVK 48
Query: 174 GKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKP 233
VR Q D + G+Y+RVH PKR Y IDW++R+I ++ +V+DKP
Sbjct: 49 --AVRTMQ--------DVELLPGSYVRVHAQPKRCLSVYKIDWSARVIRESQDFIVIDKP 98
Query: 234 AGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
G T DN E + + ++ L T ++D CT G
Sbjct: 99 PGVPSLTTIDNGVECVMSQVEKMRNIS--LMPTSRLDVCTAG 138
>gi|298713714|emb|CBJ48905.1| putative RNA pseudouridylate synthase [Ectocarpus siliculosus]
Length = 555
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 71/190 (37%), Gaps = 43/190 (22%)
Query: 91 PCPSQNCPPR--VEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKP--- 145
P P N PP V H GP+ + L LI FG VYY KP
Sbjct: 37 PLPRLNAPPHDYVRHAYSPRAGPLWSSVAAFLGWTEELARGLITFGGVYY-----KPGGA 91
Query: 146 PLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHP 205
P A P K DP D+ VE G YLR+ P
Sbjct: 92 PALAKP------KRELDP--------------------------DREVEIGEYLRIFPEP 119
Query: 206 KRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT 265
+R+P +DW S+I+ ++++KPAG T DN E+ R++ L
Sbjct: 120 RRYPAFLGVDWESKIVYDCAGVMLVNKPAGVPAHATVDNFAENMLA-GIRSVRPDLDLLL 178
Query: 266 THQIDNCTEG 275
H++D T G
Sbjct: 179 PHRLDIDTSG 188
>gi|389548702|gb|AFK83590.1| pseudouridine synthase [uncultured bacterium]
Length = 297
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 190 DQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESC 249
D+ + G Y+RVH++PKRFP IDW + I+ ++ VV++KPAG V T DN E+
Sbjct: 56 DRALSPGQYIRVHLNPKRFP-VEGIDWATTIVHRDKAFVVVNKPAGIPVHATLDNQVENL 114
Query: 250 ATFASRALGLTTPLRTTHQIDNCTEG 275
ALG L T ++D G
Sbjct: 115 LHQLRVALG--GALYVTQRLDTDVSG 138
>gi|426404290|ref|YP_007023261.1| RNA pseudouridylate synthase [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425860958|gb|AFY01994.1| putative RNA pseudouridylate synthase [Bdellovibrio bacteriovorus
str. Tiberius]
Length = 283
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 190 DQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESC 249
D V G Y+RVH P+RF D W SRI+ E VV +K +G V + DN+ E+
Sbjct: 56 DSSVSVGDYIRVHTKPRRFT-ANDGQWRSRIVFENEHFVVANKISGLPVHASVDNLHENL 114
Query: 250 ATFASRALGLTTPLRTTHQIDNCTEG 275
++ + L T + TH++D T G
Sbjct: 115 QSYLQQTLNQT--VYVTHRLDVPTRG 138
>gi|424513024|emb|CCO66608.1| predicted protein [Bathycoccus prasinos]
Length = 417
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 85/196 (43%), Gaps = 40/196 (20%)
Query: 93 PSQNCPPRVEH---LVVSEGGPVLEYICREL-NLPPLFVADLIHFGAVYYALVCPKPPLT 148
PS+ P RVEH +S + E + E+ ++ + LI FGAVY
Sbjct: 62 PSEKRPARVEHCDLKSLSNNKKLSEALHGEITDVTERYFQALIEFGAVY----------- 110
Query: 149 ATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGT--YLRVHVHPK 206
++D L + ++ TV+ K R D I+ AG+ Y+R HV+P+
Sbjct: 111 -----------ISDE--LEEDFQLEPNTVKHKMKRIR---SDVILPAGSRHYVRAHVNPR 154
Query: 207 RFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGL------- 259
RF + W I+ T+ VV+ KP+G V + DN +E+ AL +
Sbjct: 155 RFLAAGETRWMDCILKETDDFVVVMKPSGLPVSPSVDNAKENVLRCVWSALRVGNENDDE 214
Query: 260 TTPLRTTHQIDNCTEG 275
T L TH++D T G
Sbjct: 215 ATKLFPTHRLDVTTSG 230
>gi|384252304|gb|EIE25780.1| pseudouridine synthase [Coccomyxa subellipsoidea C-169]
Length = 363
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 66/166 (39%), Gaps = 29/166 (17%)
Query: 110 GPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKR 169
G +LE +L V+ LI GAVYY T P Q ++ + +
Sbjct: 43 GTLLEIAAEVSDLTLDVVSGLIDLGAVYYGE-------TEAPGQAPKWRRANRLAEAAPH 95
Query: 170 SSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVV 229
IK G ++RVH +PKR+P DW +R+I + V
Sbjct: 96 HPIK---------------------QGQWVRVHPNPKRYPAAQTTDWAARVIHLDADFCV 134
Query: 230 LDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
++KPA V N E+ +ALGL L H++D CT G
Sbjct: 135 VNKPARIPVQSHESNSVETVPRCLVKALGLEH-LWMLHRLDYCTTG 179
>gi|42523804|ref|NP_969184.1| RNA pseudouridylate synthase [Bdellovibrio bacteriovorus HD100]
gi|39576011|emb|CAE80177.1| putative RNA pseudouridylate synthase [Bdellovibrio bacteriovorus
HD100]
Length = 283
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 190 DQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESC 249
D V G Y+RVH P+RF D W SRI+ E VV +K +G V + DN+ E+
Sbjct: 56 DSSVSVGDYIRVHTKPRRFT-ANDGQWRSRIVFENEHFVVTNKISGLPVHASVDNLHENL 114
Query: 250 ATFASRALGLTTPLRTTHQIDNCTEG 275
++ + L + TH++D T G
Sbjct: 115 QSYLQQT--LHQNVYVTHRLDVPTRG 138
>gi|223999965|ref|XP_002289655.1| hypothetical protein THAPSDRAFT_268629 [Thalassiosira pseudonana
CCMP1335]
gi|220974863|gb|EED93192.1| hypothetical protein THAPSDRAFT_268629 [Thalassiosira pseudonana
CCMP1335]
Length = 404
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 178 REAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTS 237
R+ +R +E GT +RV+ HP+RFP CYD +R++ + +V+DKP
Sbjct: 97 RQMSLRYRRILTPSTIEPGTDIRVYPHPRRFPSCYDFADPNRLLYEDTTFIVVDKPPMLP 156
Query: 238 VGGTTDNIEESCATFASRALGLTTPLRTT-----------HQIDNCTEG 275
N EE C + LG P +T H++D+C G
Sbjct: 157 SQPEPSNYEECCPGCVNTLLG---PFKTIAGEDVARPLICHRVDSCVGG 202
>gi|428171903|gb|EKX40816.1| hypothetical protein GUITHDRAFT_142445 [Guillardia theta CCMP2712]
Length = 175
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 199 LRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG 258
+++ V P+RFP CY +WN R++ E ++++KP N E+ R
Sbjct: 93 MKIFVRPRRFPACYQ-EWNDRVLFEDEKFLIINKPHNLPCQAVDSNSHETVVECVGR--K 149
Query: 259 LTTPLRTTHQIDNCTE 274
L L H++DNC E
Sbjct: 150 LNKRLHLAHRLDNCVE 165
>gi|422294702|gb|EKU22002.1| ribosomal pseudouridine [Nannochloropsis gaditana CCMP526]
Length = 381
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 181 QKTFRITHVDQ-----IVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAG 235
Q FR TH+ + V G RV++ P+RFP C ID+ R+I + +++DKP G
Sbjct: 160 QNKFRRTHLIEKYPPSTVLEGDLFRVYLFPRRFPECM-IDYTFRVIWENDDLLLVDKPPG 218
Query: 236 TSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
N E+ AS +LGL L +++D T G
Sbjct: 219 CPCSLHVSNALEALDVAASASLGLN--LIRMNRLDVVTSG 256
>gi|219120675|ref|XP_002181071.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407787|gb|EEC47723.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 607
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 21/115 (18%)
Query: 182 KTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRI---------IAVTE----SHV 228
K R+ ++AG YLRVH HP+RFP + DW+ I + V E +
Sbjct: 131 KPVRLDQTAPALQAGDYLRVHHHPRRFPHAHRYDWSKSIHDTSGDKPGVIVAEDTDKGWL 190
Query: 229 VLDKPAGTSVGGTTDNIEESCATFASRALGLTTP--------LRTTHQIDNCTEG 275
V+ KP+ V T DN E+ A +A +P + T ++D T G
Sbjct: 191 VIRKPSMVPVHMTVDNCRENVADCLKQARAWQSPTADARDVYITTPQRLDQNTSG 245
>gi|397620710|gb|EJK65863.1| hypothetical protein THAOC_13233 [Thalassiosira oceanica]
Length = 470
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 10/107 (9%)
Query: 178 REAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTS 237
R+ +R +E GT +R++ HP+RFP CY+ R + + +V+DKP
Sbjct: 171 RQESLRYRRVLTASTIEPGTDIRIYPHPRRFPSCYEFSDPQRKLYEDTTFIVVDKPPMLP 230
Query: 238 VGGTTDNIEESCATFASRALG---------LTTPLRTTHQIDNCTEG 275
N EE C + +G + PL H++D+C G
Sbjct: 231 TQPEPSNYEECCPGCVNLLMGPFHTIAGEEVARPL-ICHRVDSCVGG 276
>gi|255088607|ref|XP_002506226.1| RNA pseudouridylate synthase [Micromonas sp. RCC299]
gi|226521497|gb|ACO67484.1| RNA pseudouridylate synthase [Micromonas sp. RCC299]
Length = 481
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 191 QIVEAGTYLRVHVHPKRFPR-CY-DID-WNSRIIAVTESHVVLDKPAGTSVGGTTDNIEE 247
+IV G +RVH P+R+ C+ D W R++ ++ +V++KP N E
Sbjct: 153 KIVAKGEVIRVHKRPRRYRHACWLGADAWRHRVVHEDDAILVVNKPHRLPSMAHESNGVE 212
Query: 248 SCATFASRALGLT-TPLRTTHQIDNCTEG 275
CA R+LGL+ + LR TH++D+ T G
Sbjct: 213 HCAGCLERSLGLSPSTLRVTHRLDSSTSG 241
>gi|219115335|ref|XP_002178463.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410198|gb|EEC50128.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 497
Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 182 KTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGT 241
+ FR +EAGT LRV+ +P+RFP C ++ R++ + +V+DKP
Sbjct: 195 QRFRRILKPSWIEAGTDLRVYPNPRRFPACEELT-RDRLLYEDTTFIVVDKPPLLPTQPD 253
Query: 242 TDNIEESCATFASRALGLTTPLRTT--------HQIDNCTEG 275
+ N E C LG T ++ H++D+C G
Sbjct: 254 SSNYVECCPGCVQDNLGPFTDIQGNEVVRPLLCHRVDSCVGG 295
>gi|224014790|ref|XP_002297057.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968437|gb|EED86785.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 686
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 38/157 (24%)
Query: 119 ELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVR 178
E + P L A+L+ G+V+Y P T+ ++ DPS K + +
Sbjct: 171 ENDNPNLIPAELLALGSVWY---LPYSSCTSIADRF-------DPSNGIKPTRLN----- 215
Query: 179 EAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWN--------------SRIIAVT 224
+ ++IV+AG Y RVH P+RF DW I+A
Sbjct: 216 -------VGDWNRIVQAGDYFRVHFDPRRFLETNRWDWGRGSSSADFTDTTKPGVIVARD 268
Query: 225 ES--HVVLDKPAGTSVGGTTDNIEESCATFASRALGL 259
+ +++++KP T V DN+ E+ A+ R +
Sbjct: 269 DDAGYLIINKPPSTPVHARVDNLVENVASSVGRMFWM 305
>gi|281206797|gb|EFA80981.1| hypothetical protein PPL_05814 [Polysphondylium pallidum PN500]
Length = 702
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 185 RITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN 244
R+ + ++ +EA + +++ +P+ + + ID ++ + +V+DKP G S+G DN
Sbjct: 374 RVFNYEETIEADSLVKIFFYPRHYSTDH-IDLQRLVVYENDQFMVIDKPHGVSIGPVIDN 432
Query: 245 IEESCATF--ASRALGLTTPLRTTHQIDNCTEG 275
+ SR LTT + H++D T G
Sbjct: 433 YHNNINHLIKTSRPSELTT-IYNPHRLDFQTRG 464
>gi|303274711|ref|XP_003056671.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461023|gb|EEH58316.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 548
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 63/160 (39%), Gaps = 22/160 (13%)
Query: 126 FVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFR 185
++L+ GAVY + PE R + D S R ++G +R ++
Sbjct: 125 LASELLDAGAVY---------VDWWPEGRRAGGDDDDESAARWRR-LRGDVIR--RRLAV 172
Query: 186 ITHVDQIVEAGTYLRVHVHPKRF-PRCY--DIDWNSRIIAVTESHVVLDKPAGTSVGGTT 242
+ AG +RVH P+R+ C+ + W R++ E + ++KP
Sbjct: 173 VPTPFPHARAGERVRVHRTPRRYRDACWLGEAGWRKRVVYEDEETLAVNKPHALPTQAHE 232
Query: 243 DNIEESCATFASRALGLT-------TPLRTTHQIDNCTEG 275
N E +RALG T L TH++D T G
Sbjct: 233 SNAAECVPGCVARALGFTGGVTDGDDALLVTHRLDASTSG 272
>gi|397642204|gb|EJK75085.1| hypothetical protein THAOC_03203 [Thalassiosira oceanica]
Length = 739
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 182 KTFRIT--HVDQIVEAGTYLRVHVHPKRFPRCYDIDW---------NSRIIAVTE----- 225
K R+T ++ V+ G YLRVH P+RF DW +++ V E
Sbjct: 213 KPIRLTVGALNMTVQGGDYLRVHFDPRRFCVANSYDWLAQDGTMGSDNKPGVVVERNDKI 272
Query: 226 SHVVLDKPAGTSVGGTTDNIEESCATFASRAL 257
+++L+KP G + DN E+ A R L
Sbjct: 273 GYMILNKPRGVPIHARVDNHLENVAARIGRML 304
>gi|281348028|gb|EFB23612.1| hypothetical protein PANDA_003100 [Ailuropoda melanoleuca]
Length = 675
Score = 37.4 bits (85), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 42/114 (36%), Gaps = 6/114 (5%)
Query: 1 MSSVSFSSIFTNNGRSLGAPVSLLRTLASTHASCHRNIYKSNVVLSFSSSNRNFVCESWK 60
+S+ ++ + R L L L H RNI ++ S R ESWK
Sbjct: 556 LSAYGGQTVGSMRARMLSQDTQLPPLLPFHHGGNSRNIRSQELLDGHRLSPR---TESWK 612
Query: 61 RHVFTHTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLE 114
+ HT I T G PE HRL +++HLV PV E
Sbjct: 613 QSRTVHTSVETIGQVTV---TGRPELHRLRTISESKQKSKLDHLVRRGSQPVFE 663
>gi|374603453|ref|ZP_09676432.1| RluA family pseudouridine synthase [Paenibacillus dendritiformis
C454]
gi|374390924|gb|EHQ62267.1| RluA family pseudouridine synthase [Paenibacillus dendritiformis
C454]
Length = 295
Score = 37.0 bits (84), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 185 RITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN 244
R+ DQI AG LR+H+ P+ D + I+ ++ +V KPAG +V T
Sbjct: 44 RMLAQDQIRTAGDRLRMHLFPEEAMTTEPADEPAEILYEDDAVLVAYKPAGMAVHAATAE 103
Query: 245 IEESCATFASRAL------GLTTPLRTTHQIDNCTEG 275
E+ A+ A G + +R H++D T G
Sbjct: 104 QEQRRASLAHAVACHYAWTGQSLRVRHIHRLDTDTTG 140
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.132 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,614,152,675
Number of Sequences: 23463169
Number of extensions: 192129578
Number of successful extensions: 425293
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 425211
Number of HSP's gapped (non-prelim): 65
length of query: 279
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 139
effective length of database: 9,074,351,707
effective search space: 1261334887273
effective search space used: 1261334887273
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)