BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023659
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AQO|A Chain A, Structure And Function Of A Membrane Component Secdf That
Enhances Protein Export
pdb|3AQO|B Chain B, Structure And Function Of A Membrane Component Secdf That
Enhances Protein Export
pdb|3AQO|C Chain C, Structure And Function Of A Membrane Component Secdf That
Enhances Protein Export
pdb|3AQO|D Chain D, Structure And Function Of A Membrane Component Secdf That
Enhances Protein Export
Length = 229
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 123 PPLFV-ADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSI 172
PPL ADL AV+ P+ LT TPE + F+EVT ++ KR +I
Sbjct: 123 PPLLTGADLADARAVFDQFGRPQVSLTFTPEGAKKFEEVTRQNI-GKRLAI 172
>pdb|3AQP|A Chain A, Crystal Structure Of Secdf, A Translocon-Associated
Membrane Protein, From Thermus Thrmophilus
pdb|3AQP|B Chain B, Crystal Structure Of Secdf, A Translocon-Associated
Membrane Protein, From Thermus Thrmophilus
Length = 741
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 123 PPLFV-ADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSI 172
PPL ADL AV+ P+ LT TPE + F+EVT ++ KR +I
Sbjct: 157 PPLLTGADLADARAVFDQFGRPQVSLTFTPEGAKKFEEVTRQNI-GKRLAI 206
>pdb|3ASI|A Chain A, Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns6
Length = 410
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 163 PSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIA 222
PS + R +I TV QK + VD G YL +H+H + +++ + IA
Sbjct: 246 PSTRADRLAIGFSTV---QKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDD--IA 300
Query: 223 VTESHVVLD 231
+ ES+ +++
Sbjct: 301 IEESNAIIN 309
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice
Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice
Inserts
Length = 1245
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 163 PSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIA 222
PS + R +I TV QK + VD G YL +H+H + +++ + IA
Sbjct: 1078 PSTRADRLAIGFSTV---QKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDD--IA 1132
Query: 223 VTESHVVLD 231
+ ES+ +++
Sbjct: 1133 IEESNAIIN 1141
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 163 PSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIA 222
PS + R +I TV QK + VD G YL +H+H + +++ + IA
Sbjct: 1087 PSTRADRLAIGFSTV---QKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDD--IA 1141
Query: 223 VTESHVVLD 231
+ ES+ +++
Sbjct: 1142 IEESNAIIN 1150
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 163 PSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIA 222
PS + R +I TV QK + VD G YL +H+H + +++ + IA
Sbjct: 862 PSTRADRLAIGFSTV---QKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDD--IA 916
Query: 223 VTESHVVLD 231
+ ES+ +++
Sbjct: 917 IEESNAIIN 925
>pdb|3VKF|C Chain C, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
pdb|3VKF|D Chain D, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
Length = 181
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 163 PSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIA 222
PS + R +I TV QK + VD G YL +H+H + +++ + IA
Sbjct: 25 PSTRADRLAIGFSTV---QKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDD--IA 79
Query: 223 VTESHVVLD 231
+ ES+ +++
Sbjct: 80 IEESNAIIN 88
>pdb|3BOD|A Chain A, Structure Of Mouse Beta-Neurexin 1
Length = 178
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 163 PSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIA 222
PS + R +I TV QK + VD G YL +H+H + +++ + IA
Sbjct: 26 PSTRADRLAIGFSTV---QKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDD--IA 80
Query: 223 VTESHVVLD 231
+ ES+ +++
Sbjct: 81 IEESNAIIN 89
>pdb|3B3Q|E Chain E, Crystal Structure Of A Synaptic Adhesion Complex
pdb|3B3Q|F Chain F, Crystal Structure Of A Synaptic Adhesion Complex
Length = 197
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 163 PSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIA 222
PS + R +I TV QK + VD G YL +H+H + +++ + IA
Sbjct: 34 PSTRADRLAIGFSTV---QKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDD--IA 88
Query: 223 VTESHVVLD 231
+ ES+ +++
Sbjct: 89 IEESNAIIN 97
>pdb|1C4R|A Chain A, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|B Chain B, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|C Chain C, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|D Chain D, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|E Chain E, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|F Chain F, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|G Chain G, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|H Chain H, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
Length = 182
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 163 PSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIA 222
PS + R +I TV QK + VD G YL +H+H + +++ + IA
Sbjct: 26 PSTRADRLAIGFSTV---QKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDD--IA 80
Query: 223 VTESHVVLD 231
+ ES+ +++
Sbjct: 81 IEESNAIIN 89
>pdb|2WQZ|C Chain C, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2WQZ|D Chain D, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2XB6|C Chain C, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
pdb|2XB6|D Chain D, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
Length = 179
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 163 PSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIA 222
PS + R +I TV QK + VD G YL +H+H + +++ + IA
Sbjct: 27 PSTRADRLAIGFSTV---QKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDD--IA 81
Query: 223 VTESHVVLD 231
+ ES+ +++
Sbjct: 82 IEESNAIIN 90
>pdb|2R1B|A Chain A, Crystal Structure Of Rat Neurexin 1beta With A Splice
Insert At Ss#4
pdb|2R1B|B Chain B, Crystal Structure Of Rat Neurexin 1beta With A Splice
Insert At Ss#4
Length = 220
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 163 PSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIA 222
PS + R +I TV QK + VD G YL +H+H + +++ + IA
Sbjct: 32 PSTRADRLAIGFSTV---QKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDD--IA 86
Query: 223 VTESHVVLD 231
+ ES+ +++
Sbjct: 87 IEESNAIIN 95
>pdb|3MW2|A Chain A, Crystal Structure Of Beta-Neurexin 1 With The Splice
Insert 4
pdb|3MW2|B Chain B, Crystal Structure Of Beta-Neurexin 1 With The Splice
Insert 4
Length = 207
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 163 PSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIA 222
PS + R +I TV QK + VD G YL +H+H + +++ + IA
Sbjct: 25 PSTRADRLAIGFSTV---QKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDD--IA 79
Query: 223 VTESHVVLD 231
+ ES+ +++
Sbjct: 80 IEESNAIIN 88
>pdb|2R1D|A Chain A, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|B Chain B, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|C Chain C, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|D Chain D, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|E Chain E, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|F Chain F, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|G Chain G, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|H Chain H, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|I Chain I, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|W Chain W, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
Length = 226
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 163 PSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIA 222
PS + R +I TV QK + VD G YL +H+H + +++ + IA
Sbjct: 60 PSTRADRLAIGFSTV---QKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDD--IA 114
Query: 223 VTESHVVLD 231
+ ES+ +++
Sbjct: 115 IEESNAIIN 123
>pdb|3BIW|E Chain E, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|F Chain F, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|G Chain G, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|H Chain H, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
Length = 243
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 163 PSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIA 222
PS + R +I TV QK + VD G YL +H+H + +++ + IA
Sbjct: 74 PSTRADRLAIGFSTV---QKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDD--IA 128
Query: 223 VTESHVVLD 231
+ ES+ +++
Sbjct: 129 IEESNAIIN 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,293,961
Number of Sequences: 62578
Number of extensions: 322234
Number of successful extensions: 676
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 674
Number of HSP's gapped (non-prelim): 15
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)