BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023659
         (279 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SVS0|PUS6_ARATH RNA pseudourine synthase 6, chloroplastic OS=Arabidopsis thaliana
           GN=At4g21770 PE=2 SV=1
          Length = 472

 Score =  339 bits (870), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 174/271 (64%), Positives = 210/271 (77%), Gaps = 9/271 (3%)

Query: 7   SSIFTNNGRSLGAPVSLLRTLASTHASCHRNIYKSNV-VLSFSSSNRNFVCESWKRHVFT 65
           S   T   R+L APVSLLRTLAST  +    +++SN     F SS + F C S       
Sbjct: 3   SPALTGGYRNLTAPVSLLRTLASTRVTT--PLFRSNKHSPRFISSPKRFTCLS-----LL 55

Query: 66  HTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVL-EYICRELNLPP 124
            TD+      ++ S+ GY EY+RL+PCP+ N PPR+EH+VV E   ++ E+I ++L+LPP
Sbjct: 56  KTDSQNQTTLSSSSNSGYHEYNRLMPCPAYNLPPRIEHMVVLEDDVLVSEFISKQLDLPP 115

Query: 125 LFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTF 184
           L+VADLI FGAV+YALVCPKPP TATPE++ +F+EVT PSVL KRSSIKGKTVREAQKTF
Sbjct: 116 LYVADLIRFGAVHYALVCPKPPPTATPEEIILFEEVTSPSVLKKRSSIKGKTVREAQKTF 175

Query: 185 RITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN 244
           R+TH +Q  EAGTYLRVHVHPKR PRCY+IDW SRI+AVT+S+V+LDKPAGT+VGGTTDN
Sbjct: 176 RVTHTNQYAEAGTYLRVHVHPKRSPRCYEIDWKSRIVAVTDSYVILDKPAGTTVGGTTDN 235

Query: 245 IEESCATFASRALGLTTPLRTTHQIDNCTEG 275
           IEESCATFASRAL L  PL+TTHQIDNCTEG
Sbjct: 236 IEESCATFASRALDLPEPLKTTHQIDNCTEG 266


>sp|A3BN26|PUS6_ORYSJ RNA pseudourine synthase 6, chloroplastic OS=Oryza sativa subsp.
           japonica GN=Os07g0660400 PE=2 SV=1
          Length = 477

 Score =  288 bits (736), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 141/198 (71%), Positives = 164/198 (82%)

Query: 78  PSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVY 137
           P++  YP Y RLLPCP Q+ PPR+EHLV  E    +++I R L LPPL+VADLI FGAVY
Sbjct: 66  PATAAYPVYGRLLPCPLQDDPPRIEHLVAREDEVAVDFISRSLTLPPLYVADLIKFGAVY 125

Query: 138 YALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGT 197
           YALV P+PP  A PE +R+F+EVT+PSVL +R SIKGKTVREAQKTFR+T  +Q +EAGT
Sbjct: 126 YALVAPQPPPHAAPEHVRIFREVTEPSVLCRRKSIKGKTVREAQKTFRVTDPNQRLEAGT 185

Query: 198 YLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL 257
           YLRVHVHPKRFPRCY+IDW SR+IAVT+++VVLDKPA TSVGG TDNIEESC  F SRAL
Sbjct: 186 YLRVHVHPKRFPRCYEIDWKSRVIAVTDNYVVLDKPAATSVGGATDNIEESCVVFTSRAL 245

Query: 258 GLTTPLRTTHQIDNCTEG 275
           GL TPL TTHQIDNC+EG
Sbjct: 246 GLETPLMTTHQIDNCSEG 263


>sp|Q09709|YA32_SCHPO Uncharacterized protein C18B11.02c OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=SPAC18B11.02c PE=3 SV=1
          Length = 394

 Score = 35.0 bits (79), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 155 RVFKEVTDPSVLSKRSSIKGKTVREAQKTF--RITHVDQIVEAGTYLRVHVHPKRFPRCY 212
           +   EV +     + S    K +R  Q     +I +VD ++E G  +  H H    P   
Sbjct: 43  KTLLEVFNTEFRDRESGYYEKAIRNGQVKVNNQIGNVDTLIENGYIVSHHAHRHEPPVS- 101

Query: 213 DIDWNSRIIAVTESHVVLDKPAGTSV 238
             D    I+   ES+VV+DKPAG  V
Sbjct: 102 --DQPVGIVHEDESYVVIDKPAGVPV 125


>sp|Q6PIY5|CA228_HUMAN Uncharacterized protein C1orf228 OS=Homo sapiens GN=C1orf228 PE=2
           SV=2
          Length = 440

 Score = 32.0 bits (71), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 223 VTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL-GLTTPLRTTHQIDNCTE 274
           V  SH+ LDK   T+ G T   +E+  +  AS  L  LTT LR T+  D+C E
Sbjct: 26  VARSHI-LDKFIETNQGKTAPELEQEFSQGASLFLVRLTTSLRITYMTDSCLE 77


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.132    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,596,163
Number of Sequences: 539616
Number of extensions: 4560155
Number of successful extensions: 9620
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 9615
Number of HSP's gapped (non-prelim): 6
length of query: 279
length of database: 191,569,459
effective HSP length: 116
effective length of query: 163
effective length of database: 128,974,003
effective search space: 21022762489
effective search space used: 21022762489
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)