Query 023659
Match_columns 279
No_of_seqs 206 out of 1708
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 10:38:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023659.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023659hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v9f_A Ribosomal large subunit 99.9 7.6E-25 2.6E-29 203.9 5.9 124 111-277 18-145 (325)
2 1ksk_A Ribosomal small subunit 99.9 1.4E-22 4.8E-27 180.1 5.4 108 110-277 4-112 (234)
3 1vio_A Ribosomal small subunit 99.9 2.4E-22 8.3E-27 179.9 5.4 107 111-277 4-111 (243)
4 3dh3_A Ribosomal large subunit 99.8 7.4E-20 2.5E-24 169.5 8.1 108 110-277 7-114 (290)
5 2i82_A Ribosomal large subunit 99.6 1.6E-15 5.5E-20 133.7 6.5 57 218-277 12-69 (217)
6 1v9k_A Ribosomal large subunit 99.6 2.5E-15 8.7E-20 133.4 6.5 58 219-277 3-60 (228)
7 2oml_A Ribosomal large subunit 99.5 1.1E-15 3.7E-20 132.1 1.5 54 219-277 5-58 (189)
8 2olw_A Ribosomal large subunit 99.5 1.4E-15 4.6E-20 134.8 1.8 56 217-277 31-86 (217)
9 2gml_A Ribosomal large subunit 98.9 3E-10 1E-14 102.8 3.0 49 224-277 13-61 (237)
10 2k6p_A Uncharacterized protein 98.4 3E-08 1E-12 76.2 -0.7 73 111-227 2-83 (92)
11 1dm9_A Hypothetical 15.5 KD pr 98.0 3.5E-06 1.2E-10 69.7 4.0 52 110-205 9-61 (133)
12 1p9k_A ORF, hypothetical prote 97.6 1.9E-05 6.6E-10 59.1 1.7 31 110-141 21-53 (79)
13 1c05_A Ribosomal protein S4 de 97.2 0.00058 2E-08 57.9 6.5 32 110-141 51-83 (159)
14 2vqe_D 30S ribosomal protein S 97.0 0.00094 3.2E-08 59.1 6.4 32 110-141 99-131 (209)
15 3hp7_A Hemolysin, putative; st 96.7 0.0019 6.4E-08 59.6 5.8 30 111-140 8-38 (291)
16 3r8n_D 30S ribosomal protein S 96.6 0.00051 1.8E-08 61.0 1.0 32 110-141 95-127 (205)
17 2cqj_A BRMS2, U3 small nucleol 96.2 0.0048 1.6E-07 45.7 4.2 32 110-141 8-40 (71)
18 3bbn_D Ribosomal protein S4; s 96.0 0.0022 7.5E-08 56.7 1.9 32 110-141 89-121 (201)
19 3j20_D 30S ribosomal protein S 95.3 0.014 4.6E-07 50.9 4.1 32 110-141 103-135 (180)
20 2xzm_D Ribosomal protein S4 co 94.2 0.015 5.1E-07 50.5 1.6 32 110-141 107-139 (181)
21 2aus_C Pseudouridine synthase; 90.9 0.13 4.3E-06 48.4 3.1 47 222-277 43-89 (334)
22 3u5c_J 40S ribosomal protein S 90.8 0.085 2.9E-06 46.5 1.8 31 110-141 107-139 (197)
23 1k8w_A TRNA pseudouridine synt 90.3 0.15 5.2E-06 48.0 3.2 44 225-277 25-68 (327)
24 3j20_E 30S ribosomal protein S 89.4 0.64 2.2E-05 42.2 6.4 31 111-141 44-76 (243)
25 2apo_A Probable tRNA pseudouri 88.4 0.25 8.7E-06 47.0 3.1 47 222-277 63-109 (357)
26 3kbg_A 30S ribosomal protein S 86.7 0.99 3.4E-05 40.2 5.7 31 111-141 9-41 (213)
27 3u28_A H/ACA ribonucleoprotein 86.7 0.25 8.7E-06 47.7 2.0 47 222-277 56-102 (400)
28 3iz6_C 40S ribosomal protein S 65.1 0.18 6.1E-06 44.4 -5.6 31 110-141 109-141 (195)
29 2ktl_A Tyrosyl-tRNA synthetase 56.0 9.6 0.00033 32.5 3.8 31 111-141 51-82 (164)
30 2hj1_A Hypothetical protein; s 54.3 2.8 9.5E-05 32.7 0.1 17 188-204 69-85 (97)
31 1h3f_A Tyrosyl-tRNA synthetase 50.3 24 0.00082 34.0 6.0 31 111-141 370-401 (432)
32 1sgv_A TRNA pseudouridine synt 45.9 6.2 0.00021 36.9 1.1 17 224-240 5-21 (316)
33 2jan_A Tyrosyl-tRNA synthetase 41.6 36 0.0012 32.8 5.8 31 111-141 357-388 (432)
34 1fm0_D Molybdopterin convertin 40.5 48 0.0016 23.4 5.0 14 189-202 62-75 (81)
35 1jil_A Tyrrs, tyrosyl-tRNA syn 38.9 6.4 0.00022 37.8 0.0 30 111-141 354-385 (420)
36 3iz6_D 40S ribosomal protein S 37.7 27 0.00094 31.9 4.0 32 111-142 43-76 (265)
37 1wv3_A Similar to DNA segregat 33.0 40 0.0014 29.6 4.2 26 191-230 148-174 (238)
38 2xzm_W 40S ribosomal protein S 32.3 56 0.0019 29.8 5.1 31 111-141 43-77 (260)
39 1tyg_B YJBS; alpha beta barrel 27.5 81 0.0028 23.7 4.5 15 189-203 68-82 (87)
40 3u5c_E RP5, S7, YS6, 40S ribos 27.2 86 0.0029 28.6 5.4 32 111-142 43-76 (261)
41 4egu_A Histidine triad (HIT) p 27.1 37 0.0013 25.9 2.6 20 218-237 18-38 (119)
42 3oj7_A Putative histidine tria 26.9 38 0.0013 25.8 2.6 20 218-237 21-41 (117)
43 3n1s_A HIT-like protein HINT; 26.5 38 0.0013 26.1 2.6 18 217-234 16-34 (119)
44 3o1c_A Histidine triad nucleot 26.3 39 0.0013 26.3 2.6 16 217-232 28-44 (126)
45 2ts1_A Tyrosyl-tRNA synthetase 25.3 15 0.00051 35.3 0.0 31 111-141 353-384 (419)
46 3ksv_A Uncharacterized protein 21.6 52 0.0018 26.6 2.6 16 217-232 24-40 (149)
47 3p0t_A Uncharacterized protein 21.3 54 0.0019 25.7 2.6 15 218-232 19-34 (138)
48 1xqu_A HIT family hydrolase; p 20.5 57 0.002 26.4 2.6 23 217-239 48-71 (147)
49 2kfs_A Conserved hypothetical 20.4 57 0.0019 27.3 2.6 26 111-137 33-58 (148)
No 1
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=99.90 E-value=7.6e-25 Score=203.88 Aligned_cols=124 Identities=13% Similarity=0.075 Sum_probs=54.2
Q ss_pred cHHHHHHHhc-CCCHHHHHHHHHcCcEEEccccCCCCCCCCchhhhhccccCCcccccccccccCcceeeccccccccCC
Q 023659 111 PVLEYICREL-NLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHV 189 (279)
Q Consensus 111 rLd~~L~~~l-~lSr~~i~~LI~~G~V~vn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~GK~v~~~q~~~rv~~~ 189 (279)
|||+||++.+ .+||+.+++||+.|.|+|||+. +.++
T Consensus 18 RLd~~L~~~~~~~SR~~~~~lI~~G~V~VNG~~-------------------------------------------v~~~ 54 (325)
T 1v9f_A 18 RLDQALAEMFPDYSRSRIKEWILDQRVLVNGKV-------------------------------------------CDKP 54 (325)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHhhccccCHHHHHHHHHCCCEEECCEE-------------------------------------------ccCC
Confidence 8999999987 7999999999999999999861 1245
Q ss_pred CceecCCCEEEEEcCCCCCCCCCCCCCccceEEecCcEEEEeCCCCCcccCCCCCCcCcHHHHHHHHhC---CCCCcccc
Q 023659 190 DQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG---LTTPLRTT 266 (279)
Q Consensus 190 ~~~Lk~GD~I~V~~~~~~~~~~~~~~~~l~ILYEDedlLVVNKPaGl~VHPt~~~~~~TL~~~l~~~lg---~~~~l~~V 266 (279)
+++|++||.|.|..++.+.....+.+++++|||||+++||||||+||+|||+.++..+|+.+.+..++. ....+++|
T Consensus 55 ~~~v~~gD~I~v~~~~~~~~~~~~~~~~~~ilyed~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~v 134 (325)
T 1v9f_A 55 KEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIV 134 (325)
T ss_dssp ---------------------CCCCCCCCCEEEECSSEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCGGGGGSGGGGBC
T ss_pred CCEeCCCCEEEEeccccccccCCcccCCCeEEEECCCEEEEECCCCCeEecCCCCCCccHHHHHHHHHHhcCCCCceeee
Confidence 678999999999865432222334556789999999999999999999999988778899888754432 11236789
Q ss_pred ccCCcCccccc
Q 023659 267 HQIDNCTEGWR 277 (279)
Q Consensus 267 HRLDrdTSGLL 277 (279)
||||++|||||
T Consensus 135 hRLD~~TSGll 145 (325)
T 1v9f_A 135 HRLDKDTTGLM 145 (325)
T ss_dssp CCCCTTCEEEE
T ss_pred cCCCCCCeeEE
Confidence 99999999997
No 2
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=99.86 E-value=1.4e-22 Score=180.11 Aligned_cols=108 Identities=13% Similarity=0.098 Sum_probs=87.4
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHcCcEEEccccCCCCCCCCchhhhhccccCCcccccccccccCcceeeccccccccCC
Q 023659 110 GPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHV 189 (279)
Q Consensus 110 grLd~~L~~~l~lSr~~i~~LI~~G~V~vn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~GK~v~~~q~~~rv~~~ 189 (279)
.|||+||++...+||+.++++|+.|.|++||+. + .++
T Consensus 4 ~RLd~~L~~~~~~SR~~~~~li~~G~V~VNG~~----------------------------------v---------~~~ 40 (234)
T 1ksk_A 4 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEI----------------------------------V---------RNA 40 (234)
T ss_dssp EEHHHHHHHHHTCCHHHHHHHHHTTCEEETTEE----------------------------------C---------CCT
T ss_pred ccHHHHHHHcCCCCHHHHHHHHHcCeEEECCEE----------------------------------e---------CCC
Confidence 389999998878999999999999999999861 1 135
Q ss_pred CceecCCCEEEEEcCCCCCCCCCCCCCccceEEe-cCcEEEEeCCCCCcccCCCCCCcCcHHHHHHHHhCCCCCcccccc
Q 023659 190 DQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAV-TESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQ 268 (279)
Q Consensus 190 ~~~Lk~GD~I~V~~~~~~~~~~~~~~~~l~ILYE-DedlLVVNKPaGl~VHPt~~~~~~TL~~~l~~~lg~~~~l~~VHR 268 (279)
+++|++||.|.+.. ..|+|| |++++|||||+||+|||+.++ .+|+.+.+....+ ..+++|||
T Consensus 41 ~~~v~~gD~I~v~~--------------~~i~~e~d~~~lvvnKP~G~~~~~~~~~-~~tl~~~l~~~~~--~~~~~vhR 103 (234)
T 1ksk_A 41 AFKLLPEHDVAYDG--------------NPLAQQHGPRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVA--WKLHAAGR 103 (234)
T ss_dssp TCEECTTCCEEETT--------------EEECCCCCCCEEEEEECTTCBSSSSCSS-SCBGGGGCCCTTG--GGCEESSC
T ss_pred CCCCCCCCEEEEeC--------------eEeecCCCCEEEEEECCCCCEeCCCCCC-CCcHHHHhhhhhc--CCeeEcCC
Confidence 78899999988741 148999 999999999999999998764 7777765532211 13568999
Q ss_pred CCcCccccc
Q 023659 269 IDNCTEGWR 277 (279)
Q Consensus 269 LDrdTSGLL 277 (279)
||++|||||
T Consensus 104 LD~~TsGll 112 (234)
T 1ksk_A 104 LDIDTTGLV 112 (234)
T ss_dssp CCTTCEEEE
T ss_pred CCCCCeeEE
Confidence 999999997
No 3
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=99.85 E-value=2.4e-22 Score=179.93 Aligned_cols=107 Identities=15% Similarity=0.156 Sum_probs=85.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHcCcEEEccccCCCCCCCCchhhhhccccCCcccccccccccCcceeeccccccccCCC
Q 023659 111 PVLEYICRELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVD 190 (279)
Q Consensus 111 rLd~~L~~~l~lSr~~i~~LI~~G~V~vn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~GK~v~~~q~~~rv~~~~ 190 (279)
|||+||++...+||+.+++||+.|.|+|||+. +.+++
T Consensus 4 RLd~~L~~~~~~SR~~~~~lI~~G~V~VNG~~-------------------------------------------v~~~~ 40 (243)
T 1vio_A 4 RLDKFIAENVGLTRSQATKAIRQSAVKINGEI-------------------------------------------VKSGS 40 (243)
T ss_dssp EHHHHHHHHHTCCHHHHHHHHHTTCEEETTEE-------------------------------------------CCCTT
T ss_pred cHHHHHHHcCCCCHHHHHHHHHcCcEEECCEE-------------------------------------------eCCCC
Confidence 79999998878999999999999999999861 11356
Q ss_pred ceecCCCEEEEEcCCCCCCCCCCCCCccceEEecCc-EEEEeCCCCCcccCCCCCCcCcHHHHHHHHhCCCCCccccccC
Q 023659 191 QIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTES-HVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQI 269 (279)
Q Consensus 191 ~~Lk~GD~I~V~~~~~~~~~~~~~~~~l~ILYEDed-lLVVNKPaGl~VHPt~~~~~~TL~~~l~~~lg~~~~l~~VHRL 269 (279)
++|++||.|.+. + ..|+|||++ ++|||||+||+|||+.++ ..|+.+.+..... ..+++||||
T Consensus 41 ~~v~~gD~I~v~--~------------~~i~~ed~~~~lvvnKP~G~~~~~~~~~-~~tl~~~l~~~~~--~~~~~vhRL 103 (243)
T 1vio_A 41 VQISQEDEIYFE--D------------ELLTWIEEGQYFMLNKPQGCVCSNDDGD-YPTIYQFFDYPLA--GKLHSAGRL 103 (243)
T ss_dssp CEECTTSCEEET--T------------EECCSSCCCCEEEEEECTTCBSSCCC---CCBGGGGSCTTGG--GGCEESSCC
T ss_pred CCcCCCCEEEEe--c------------cccccCCCCEEEEEECCCCCEeCCCCCC-CCcHHHHHhHHhc--CCEeEccCC
Confidence 789999987763 1 248999999 999999999999998764 6677665532221 135689999
Q ss_pred CcCccccc
Q 023659 270 DNCTEGWR 277 (279)
Q Consensus 270 DrdTSGLL 277 (279)
|+||||||
T Consensus 104 D~~TsGll 111 (243)
T 1vio_A 104 DVDTTGLV 111 (243)
T ss_dssp CTTCEEEE
T ss_pred CCCCeEEE
Confidence 99999997
No 4
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=99.79 E-value=7.4e-20 Score=169.53 Aligned_cols=108 Identities=15% Similarity=0.147 Sum_probs=85.9
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHcCcEEEccccCCCCCCCCchhhhhccccCCcccccccccccCcceeeccccccccCC
Q 023659 110 GPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHV 189 (279)
Q Consensus 110 grLd~~L~~~l~lSr~~i~~LI~~G~V~vn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~GK~v~~~q~~~rv~~~ 189 (279)
.|||.||++...+||+.+++||+.|.|+|||+. + ..
T Consensus 7 ~RLdk~La~~g~~SR~~a~~lI~~G~V~VNG~~----------------------------------v----------~~ 42 (290)
T 3dh3_A 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKR----------------------------------A----------TI 42 (290)
T ss_dssp EEHHHHHHTTTSSCHHHHHHHHHTTCEEETTEE----------------------------------C----------CT
T ss_pred hHHHHHHHhCCCCCHHHHHHHHHCCCEEECCEE----------------------------------c----------cC
Confidence 389999998756899999999999999999861 1 44
Q ss_pred CceecCCCEEEEEcCCCCCCCCCCCCCccceEEecCcEEEEeCCCCCcccCCCCCCcCcHHHHHHHHhCCCCCccccccC
Q 023659 190 DQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQI 269 (279)
Q Consensus 190 ~~~Lk~GD~I~V~~~~~~~~~~~~~~~~l~ILYEDedlLVVNKPaGl~VHPt~~~~~~TL~~~l~~~lg~~~~l~~VHRL 269 (279)
++.|.+||.|.|...+. .+ ..|||+++||||||+||++||+.++ ..|+.+.+.. ...+++||||
T Consensus 43 ~~~V~~gD~I~v~~~~i-----~~------~~~ed~~~lvvnKP~G~~~~~~~~~-~~tl~~~l~~----~~~~~~VhRL 106 (290)
T 3dh3_A 43 GDQVKPGDVVKVNGQLI-----EP------REAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH----SKRVFPIGRL 106 (290)
T ss_dssp TCEECTTCCEEETTEEE-----CC------CCGGGCCEEEEEECTTCBCCCCSSC-TTBHHHHHTC----SSCCEESSCC
T ss_pred CcCcCCCCEEEeccccc-----cc------cccccceEEEEECCCccccCCCCCC-CCcHHHHhhc----cCceeeeccC
Confidence 67899999999864211 01 1389999999999999999998754 6677776532 2346789999
Q ss_pred CcCccccc
Q 023659 270 DNCTEGWR 277 (279)
Q Consensus 270 DrdTSGLL 277 (279)
|+||||||
T Consensus 107 D~dTSGLl 114 (290)
T 3dh3_A 107 DKDSQGLI 114 (290)
T ss_dssp CTTCEEEE
T ss_pred CCCCcceE
Confidence 99999997
No 5
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli}
Probab=99.58 E-value=1.6e-15 Score=133.75 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=48.0
Q ss_pred cceEEecCcEEEEeCCCCCcccCCCC-CCcCcHHHHHHHHhCCCCCccccccCCcCccccc
Q 023659 218 SRIIAVTESHVVLDKPAGTSVGGTTD-NIEESCATFASRALGLTTPLRTTHQIDNCTEGWR 277 (279)
Q Consensus 218 l~ILYEDedlLVVNKPaGl~VHPt~~-~~~~TL~~~l~~~lg~~~~l~~VHRLDrdTSGLL 277 (279)
++|||||+++||||||+||+|||+.+ ...+++.+.+..... .+.+|||||++|||||
T Consensus 12 ~~ilyed~~~lvvnKP~G~~~~~~~~~~~~~tl~~~l~~~~~---~~~~vhRLD~~TSGll 69 (217)
T 2i82_A 12 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP---QAESVHRLDMATSGVI 69 (217)
T ss_dssp CCEEEECSSEEEEEECTTSBSSCCSSGGGCCBHHHHHHHHCT---TCEESSCCCTTCEEEE
T ss_pred ceEEEECCCEEEEECCCCCeEeCCCCCCchhHHHHHHHHHCC---CCceeecCCCCCeEEE
Confidence 68999999999999999999999765 456788887765432 2568999999999997
No 6
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A
Probab=99.56 E-value=2.5e-15 Score=133.36 Aligned_cols=58 Identities=24% Similarity=0.250 Sum_probs=46.9
Q ss_pred ceEEecCcEEEEeCCCCCcccCCCCCCcCcHHHHHHHHhCCCCCccccccCCcCccccc
Q 023659 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGWR 277 (279)
Q Consensus 219 ~ILYEDedlLVVNKPaGl~VHPt~~~~~~TL~~~l~~~lg~~~~l~~VHRLDrdTSGLL 277 (279)
+|+|||+++||||||+||+|||+.+ ...++...+....+....+++|||||++|||||
T Consensus 3 ~Ilyed~~~lvvnKP~G~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~VhRLD~~TSGll 60 (228)
T 1v9k_A 3 VIMYEDDHILVLNKPSGTAVHGGSG-LSFGVIEGLRALRPEARFLELVHRLDRDTSGVL 60 (228)
T ss_dssp CEEEECSSEEEEEECTTSCSSCCSS-SBCCHHHHHHHHSTTCSCCEESSCCCTTCEEEE
T ss_pred CEEEECCCEEEEECCCCCeEecCCC-hHHHHHHHHHHHcCCCCccceEecCCCCCeEEE
Confidence 6999999999999999999999776 456677766554442234668999999999997
No 7
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=99.53 E-value=1.1e-15 Score=132.08 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=42.9
Q ss_pred ceEEecCcEEEEeCCCCCcccCCCCCCcCcHHHHHHHHhCCCCCccccccCCcCccccc
Q 023659 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGWR 277 (279)
Q Consensus 219 ~ILYEDedlLVVNKPaGl~VHPt~~~~~~TL~~~l~~~lg~~~~l~~VHRLDrdTSGLL 277 (279)
.|||||+++||||||+||+|||+.++...|+.+.+. .. .+++|||||++|||||
T Consensus 5 ~ilyed~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~----~~-~~~~vhRLD~~TSGll 58 (189)
T 2oml_A 5 KPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP----VQ-GVYAAGRLDRDSEGLL 58 (189)
T ss_dssp ---CCCCCEEEEEECTTBCSCSSCCTTCBCGGGTCC----CS-SCEESSCCCTTCEEEE
T ss_pred ccccCCCeEEEEECCCCCEecCCCCCCCCCHHHHcC----CC-CceECCCCCCCCeeEE
Confidence 699999999999999999999998776777765442 22 3578999999999997
No 8
>2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, isomerase; 1.60A {Escherichia coli}
Probab=99.53 E-value=1.4e-15 Score=134.85 Aligned_cols=56 Identities=13% Similarity=0.146 Sum_probs=41.6
Q ss_pred ccceEEecCcEEEEeCCCCCcccCCCCCCcCcHHHHHHHHhCCCCCccccccCCcCccccc
Q 023659 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGWR 277 (279)
Q Consensus 217 ~l~ILYEDedlLVVNKPaGl~VHPt~~~~~~TL~~~l~~~lg~~~~l~~VHRLDrdTSGLL 277 (279)
.++|||||+++||||||+||+|||+.+....|+.+.+. .. .+++|||||++|||||
T Consensus 31 ~~~Ilyed~~~lvvnKP~Gl~~~~~~~~~~~tl~~~l~----~~-~~~~VhRLDr~TSGll 86 (217)
T 2olw_A 31 RRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP----VQ-GVYAAGRLDRDSEGLL 86 (217)
T ss_dssp ------CCCCEEEEEECTTBCSCSSCCTTSBCGGGTCC----CC-SCEESSCCCTTCEEEE
T ss_pred cCceEeeCCcEEEEECCCCCEeccCCCCCCccHHHHhC----cC-CceECCCCCCCCeeEE
Confidence 46899999999999999999999988766777665442 22 3578999999999997
No 9
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli}
Probab=98.93 E-value=3e-10 Score=102.82 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=38.7
Q ss_pred cCcEEEEeCCCCCcccCCCCCCcCcHHHHHHHHhCCCCCccccccCCcCccccc
Q 023659 224 TESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGWR 277 (279)
Q Consensus 224 DedlLVVNKPaGl~VHPt~~~~~~TL~~~l~~~lg~~~~l~~VHRLDrdTSGLL 277 (279)
++++||+|||+|++||+... ...|+.+++. ....+++|||||+||||||
T Consensus 13 ~~~~lvlnKPaG~vs~~~~~-~~~tv~dll~----~~~rl~~VgRLD~dTSGLL 61 (237)
T 2gml_A 13 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVN----HSKRVFPIGRLDKDSQGLI 61 (237)
T ss_dssp CCCEEEEEECTTCBCCSSSS-CSSBHHHHSC----CSSCCEEESCCCTTCEEEE
T ss_pred CCEEEEEECCCCCEeCCCCC-CCCCHHHHhh----ccCCeeEecCCCCCCeeEE
Confidence 56899999999999999765 4667766542 1224678999999999997
No 10
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=98.38 E-value=3e-08 Score=76.21 Aligned_cols=73 Identities=12% Similarity=0.156 Sum_probs=52.9
Q ss_pred cHHHHHHHhcC-CCHHHHHHHHHcCcEEEccccCCCCCCCCchhhhhccccCCcccccccccccCcceeeccccccccCC
Q 023659 111 PVLEYICRELN-LPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHV 189 (279)
Q Consensus 111 rLd~~L~~~l~-lSr~~i~~LI~~G~V~vn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~GK~v~~~q~~~rv~~~ 189 (279)
|||.||++... .||+.+++||..|.|+|||+. + ++
T Consensus 2 RLD~~L~~~~~~~sR~~~~~li~~G~V~VNg~~----------------------------------~----------~~ 37 (92)
T 2k6p_A 2 RIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSC----------------------------------A----------KA 37 (92)
T ss_dssp BHHHHSTTTTSCCCCCSSCCHHHHTCCEETTEE----------------------------------C----------CT
T ss_pred hHHHHHHHCCCCCCHHHHHHHHHCCcEEECCEE----------------------------------c----------CC
Confidence 79999987533 599999999999999999861 1 44
Q ss_pred CceecCCCEEEEEcCCCCCC----C----CCCCCCccceEEecCcE
Q 023659 190 DQIVEAGTYLRVHVHPKRFP----R----CYDIDWNSRIIAVTESH 227 (279)
Q Consensus 190 ~~~Lk~GD~I~V~~~~~~~~----~----~~~~~~~l~ILYEDedl 227 (279)
++.|++||.|.|.++++... . ..+..-.++|+|||+++
T Consensus 38 ~~~v~~gd~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~lyed~~~ 83 (92)
T 2k6p_A 38 SKEVKAGDTISLHYLKGIEEYTILQIPALKNVPRKDTHLYIAPKTK 83 (92)
T ss_dssp TCBCCTTCEEEECCSSCCEEEEECCCCCCSCCCSSSTTSSEEECCC
T ss_pred CCCcCCCCEEEEEeCCceEEEEEeccccccCCCHHHHHHHHHhcCC
Confidence 67899999999987543211 0 01122347899999875
No 11
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=98.00 E-value=3.5e-06 Score=69.69 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=43.5
Q ss_pred CcHHHHHHHh-cCCCHHHHHHHHHcCcEEEccccCCCCCCCCchhhhhccccCCcccccccccccCcceeeccccccccC
Q 023659 110 GPVLEYICRE-LNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITH 188 (279)
Q Consensus 110 grLd~~L~~~-l~lSr~~i~~LI~~G~V~vn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~GK~v~~~q~~~rv~~ 188 (279)
.+||.||... +..||+.+++||..|.|.|||.. + +
T Consensus 9 ~RLDk~L~~~~~~~SRs~a~~li~~G~V~VNG~~----------------------------------v----------k 44 (133)
T 1dm9_A 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQR----------------------------------S----------K 44 (133)
T ss_dssp CBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEE----------------------------------C----------C
T ss_pred hhHHHHHHHCCCCCCHHHHHHHHHCCcEEECCEE----------------------------------c----------C
Confidence 4899999986 45799999999999999999861 1 4
Q ss_pred CCceecCCCEEEEEcCC
Q 023659 189 VDQIVEAGTYLRVHVHP 205 (279)
Q Consensus 189 ~~~~Lk~GD~I~V~~~~ 205 (279)
+++.|++||.|.|.+++
T Consensus 45 ~s~~V~~GD~I~I~~~~ 61 (133)
T 1dm9_A 45 PSKIVELNATLTLRQGN 61 (133)
T ss_dssp TTCBCCTTCEEEEEETT
T ss_pred CCCEeCCCCEEEEEeCC
Confidence 56789999999998754
No 12
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=97.58 E-value=1.9e-05 Score=59.12 Aligned_cols=31 Identities=13% Similarity=-0.091 Sum_probs=27.9
Q ss_pred CcHHHHHHHhcCC--CHHHHHHHHHcCcEEEccc
Q 023659 110 GPVLEYICRELNL--PPLFVADLIHFGAVYYALV 141 (279)
Q Consensus 110 grLd~~L~~~l~l--Sr~~i~~LI~~G~V~vn~~ 141 (279)
.|||+||++. ++ ||+.+++||+.|.|+|||+
T Consensus 21 ~RLdk~L~~~-g~~~SR~~a~~lI~~G~V~VNG~ 53 (79)
T 1p9k_A 21 VELCDLLKLE-GWSESGAQAKIAIAEGQVKVDGA 53 (79)
T ss_dssp CCHHHHHHHH-TSCSSSSTTSHHHHHHHHEETTB
T ss_pred chHHHHHHHC-CCCCCHHHHHHHHHCCEEEECCE
Confidence 4899999975 64 9999999999999999986
No 13
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=97.20 E-value=0.00058 Score=57.88 Aligned_cols=32 Identities=9% Similarity=-0.004 Sum_probs=28.4
Q ss_pred CcHHHHHHHhc-CCCHHHHHHHHHcCcEEEccc
Q 023659 110 GPVLEYICREL-NLPPLFVADLIHFGAVYYALV 141 (279)
Q Consensus 110 grLd~~L~~~l-~lSr~~i~~LI~~G~V~vn~~ 141 (279)
.|||.+|.+.. +.||..+++||..|.|.|||+
T Consensus 51 ~RLD~~L~~~g~~~SR~~ar~lI~~G~V~VNG~ 83 (159)
T 1c05_A 51 SRLDNLVYRLGLARTRRQARQLVTHGHILVDGS 83 (159)
T ss_dssp HBHHHHHHHTTSCSSHHHHHHHHHTTCEEETTE
T ss_pred HHHHHHHHHcCCcCCHHHHHHHHHCCCEEECCE
Confidence 37999998753 689999999999999999986
No 14
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=97.03 E-value=0.00094 Score=59.10 Aligned_cols=32 Identities=9% Similarity=0.075 Sum_probs=28.5
Q ss_pred CcHHHHHHHh-cCCCHHHHHHHHHcCcEEEccc
Q 023659 110 GPVLEYICRE-LNLPPLFVADLIHFGAVYYALV 141 (279)
Q Consensus 110 grLd~~L~~~-l~lSr~~i~~LI~~G~V~vn~~ 141 (279)
.|||.+|.+. ++.||..+++||..|.|.|||+
T Consensus 99 ~RLD~~L~~~g~~~SR~~arqLI~~G~V~VNG~ 131 (209)
T 2vqe_D 99 SRLDNVVYRLGFAVSRRQARQLVRHGHITVNGR 131 (209)
T ss_dssp TBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTE
T ss_pred HHHHHHHHHhcCcCCHHHHHHHHHCCCEEECCE
Confidence 4899999865 4689999999999999999986
No 15
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=96.71 E-value=0.0019 Score=59.62 Aligned_cols=30 Identities=13% Similarity=-0.050 Sum_probs=27.6
Q ss_pred cHHHHHHHh-cCCCHHHHHHHHHcCcEEEcc
Q 023659 111 PVLEYICRE-LNLPPLFVADLIHFGAVYYAL 140 (279)
Q Consensus 111 rLd~~L~~~-l~lSr~~i~~LI~~G~V~vn~ 140 (279)
|||.||.+. +..||+++++||..|.|+|||
T Consensus 8 RLD~~L~~~g~~~SR~~a~~lI~~G~V~Vng 38 (291)
T 3hp7_A 8 RVDVLAYKQGLFETREQAKRGVMAGLVVNVI 38 (291)
T ss_dssp EHHHHHHHTTSSSSHHHHHHHHHTTCEEETT
T ss_pred hHHHHHHHcCCcccHHHHHHHHHCCeEEECC
Confidence 899999875 467999999999999999998
No 16
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=96.57 E-value=0.00051 Score=60.97 Aligned_cols=32 Identities=13% Similarity=0.080 Sum_probs=28.4
Q ss_pred CcHHHHHHHh-cCCCHHHHHHHHHcCcEEEccc
Q 023659 110 GPVLEYICRE-LNLPPLFVADLIHFGAVYYALV 141 (279)
Q Consensus 110 grLd~~L~~~-l~lSr~~i~~LI~~G~V~vn~~ 141 (279)
.|||.||.+. ++.||..+++||..|.|.|||+
T Consensus 95 ~RLD~~L~r~g~~~SR~~ArqLI~~G~V~VNG~ 127 (205)
T 3r8n_D 95 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGR 127 (205)
T ss_dssp TBTTHHHHTTSSCSSHHHHHHHHHTTCCBSSSS
T ss_pred hhHHHHHHHhcchhHHHHHHHHHHCCCEEECCE
Confidence 4799999863 4689999999999999999986
No 17
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.17 E-value=0.0048 Score=45.73 Aligned_cols=32 Identities=6% Similarity=-0.095 Sum_probs=27.4
Q ss_pred CcHHHHHHHhc-CCCHHHHHHHHHcCcEEEccc
Q 023659 110 GPVLEYICREL-NLPPLFVADLIHFGAVYYALV 141 (279)
Q Consensus 110 grLd~~L~~~l-~lSr~~i~~LI~~G~V~vn~~ 141 (279)
.|||.+|.+.- .-||..+++||..|.|.|||+
T Consensus 8 ~RLD~~l~~~gla~SR~~A~~lI~~G~V~Vng~ 40 (71)
T 2cqj_A 8 RRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPD 40 (71)
T ss_dssp EEHHHHHHHTTCSSSHHHHHHHHHTTCEEETTB
T ss_pred HHHHHHHHHhCCcCCHHHHHHHHHCCcEEECCE
Confidence 38999998633 359999999999999999986
No 18
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=96.00 E-value=0.0022 Score=56.71 Aligned_cols=32 Identities=6% Similarity=-0.178 Sum_probs=26.9
Q ss_pred CcHHHHHHHhc-CCCHHHHHHHHHcCcEEEccc
Q 023659 110 GPVLEYICREL-NLPPLFVADLIHFGAVYYALV 141 (279)
Q Consensus 110 grLd~~L~~~l-~lSr~~i~~LI~~G~V~vn~~ 141 (279)
.|||.+|.+.. ..||..+++||..|.|.|||.
T Consensus 89 ~RLD~~L~r~g~a~SR~~ArqLI~~G~V~VNG~ 121 (201)
T 3bbn_D 89 MRLDNILFRLGMAPTIPGARQLVNHRHILVNGR 121 (201)
T ss_dssp SBTTTTTTTTTSSSSSHHHHHHHHTTCEEETTE
T ss_pred HHHHHHHHHcCCcCCHHHHHHHHhCCcEEeCCE
Confidence 37888886532 479999999999999999986
No 19
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.29 E-value=0.014 Score=50.90 Aligned_cols=32 Identities=13% Similarity=0.019 Sum_probs=27.1
Q ss_pred CcHHHHHHH-hcCCCHHHHHHHHHcCcEEEccc
Q 023659 110 GPVLEYICR-ELNLPPLFVADLIHFGAVYYALV 141 (279)
Q Consensus 110 grLd~~L~~-~l~lSr~~i~~LI~~G~V~vn~~ 141 (279)
-|||.+|.+ .|.-||..+++||..|.|.|||.
T Consensus 103 ~RLD~~L~~~G~a~SR~~Ar~LI~~G~V~VNg~ 135 (180)
T 3j20_D 103 RRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQ 135 (180)
T ss_dssp TSHHHHHHHHTSSSSHHHHHHHHHHTCCEESSS
T ss_pred hhhhheeecCcccCcHHHHHHHHHcCCeEECCE
Confidence 479999854 44569999999999999999986
No 20
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=94.20 E-value=0.015 Score=50.53 Aligned_cols=32 Identities=9% Similarity=-0.054 Sum_probs=27.6
Q ss_pred CcHHHHHHH-hcCCCHHHHHHHHHcCcEEEccc
Q 023659 110 GPVLEYICR-ELNLPPLFVADLIHFGAVYYALV 141 (279)
Q Consensus 110 grLd~~L~~-~l~lSr~~i~~LI~~G~V~vn~~ 141 (279)
-|||.+|.. .+..||..++.||..|.|.|||.
T Consensus 107 ~RLD~vL~~~G~a~SR~~Ar~LI~~G~V~VNg~ 139 (181)
T 2xzm_D 107 RRLQTRVFKLNLANSIHHSRVLIRQRHIKVGKN 139 (181)
T ss_dssp TBHHHHHHHTTCSSSTTHHHHHTTTTCCEETTE
T ss_pred cchhHHHHhccccCCHHHHHHHHHCCEEEECCE
Confidence 489999965 34569999999999999999986
No 21
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=90.86 E-value=0.13 Score=48.42 Aligned_cols=47 Identities=21% Similarity=0.295 Sum_probs=37.2
Q ss_pred EecCcEEEEeCCCCCcccCCCCCCcCcHHHHHHHHhCCCCCccccccCCcCccccc
Q 023659 222 AVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGWR 277 (279)
Q Consensus 222 YEDedlLVVNKPaGl~VHPt~~~~~~TL~~~l~~~lg~~~~l~~VHRLDrdTSGLL 277 (279)
|-.+.+|+||||.||.+| .+++.+.+.++... +....-||-..||+|
T Consensus 43 ~~~~Gil~vdKP~g~tS~--------~vv~~vr~~~~~~K-vGH~GTLDP~atGvL 89 (334)
T 2aus_C 43 HIQYGVINLDKPPGPTSH--------EVVAWIKRILNLEK-AGHGGTLDPKVSGVL 89 (334)
T ss_dssp HHHTEEEEEEECSSSCHH--------HHHHHHHHHTTCSC-EEESSCCCTTCEEEE
T ss_pred hccCcEEEEECCCCCCHH--------HHHHHHHHHhCcce-eccccccCCccceeE
Confidence 446789999999999887 35566777777654 344999999999997
No 22
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=90.78 E-value=0.085 Score=46.54 Aligned_cols=31 Identities=10% Similarity=-0.026 Sum_probs=26.6
Q ss_pred CcHHHHHHHhcC--CCHHHHHHHHHcCcEEEccc
Q 023659 110 GPVLEYICRELN--LPPLFVADLIHFGAVYYALV 141 (279)
Q Consensus 110 grLd~~L~~~l~--lSr~~i~~LI~~G~V~vn~~ 141 (279)
.|||.+|.. ++ -|+..+++||..|.|.|||+
T Consensus 107 ~RLD~~L~r-~G~a~Sr~~ArqLI~~GhV~VNG~ 139 (197)
T 3u5c_J 107 RRLQTQVYK-LGLAKSVHHARVLITQRHIAVGKQ 139 (197)
T ss_dssp TSHHHHHHH-SSTTSSHHHHHHHHHTSCCBSSSC
T ss_pred HHHHHHHHH-ccccCCHHHHHHHHHcCCEEECCE
Confidence 479988875 44 49999999999999999986
No 23
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=90.32 E-value=0.15 Score=48.00 Aligned_cols=44 Identities=23% Similarity=0.284 Sum_probs=35.0
Q ss_pred CcEEEEeCCCCCcccCCCCCCcCcHHHHHHHHhCCCCCccccccCCcCccccc
Q 023659 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGWR 277 (279)
Q Consensus 225 edlLVVNKPaGl~VHPt~~~~~~TL~~~l~~~lg~~~~l~~VHRLDrdTSGLL 277 (279)
+-||+||||+||.+| .+++.+.+.++... +.....||-..||+|
T Consensus 25 ~Gil~vdKP~G~TS~--------dvv~~vr~~l~~kK-vGH~GTLDP~AtGvL 68 (327)
T 1k8w_A 25 NGVLLLDKPQGMSSN--------DALQKVKRIYNANR-AGHTGALDPLATGML 68 (327)
T ss_dssp CEEEEEEECTTCCHH--------HHHHHHHHHTTCSC-EEESSCCCTTCEEEE
T ss_pred CeEEEEECCCCCCHH--------HHHHHHHHhhccce-eccCCCCCCCCeeEE
Confidence 469999999999887 35567777777654 444999999999997
No 24
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=89.44 E-value=0.64 Score=42.20 Aligned_cols=31 Identities=13% Similarity=0.066 Sum_probs=28.7
Q ss_pred cHHHHHHHhcC--CCHHHHHHHHHcCcEEEccc
Q 023659 111 PVLEYICRELN--LPPLFVADLIHFGAVYYALV 141 (279)
Q Consensus 111 rLd~~L~~~l~--lSr~~i~~LI~~G~V~vn~~ 141 (279)
+|.-||.++|+ .++..+++++..|.|.|||+
T Consensus 44 PL~i~LRdrLgyA~t~rEar~Iv~~~~I~VdGK 76 (243)
T 3j20_E 44 PLLYIVRDYLGYAKTAREARKILNEGKFLVDGR 76 (243)
T ss_dssp EHHHHHHTTSCCCSSHHHHHHHHHHCSCEETTE
T ss_pred eehhhhhhhhccccCHHHHHHHHHCCcEEECCE
Confidence 79999999997 68899999999999999986
No 25
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=88.37 E-value=0.25 Score=46.95 Aligned_cols=47 Identities=23% Similarity=0.324 Sum_probs=37.2
Q ss_pred EecCcEEEEeCCCCCcccCCCCCCcCcHHHHHHHHhCCCCCccccccCCcCccccc
Q 023659 222 AVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGWR 277 (279)
Q Consensus 222 YEDedlLVVNKPaGl~VHPt~~~~~~TL~~~l~~~lg~~~~l~~VHRLDrdTSGLL 277 (279)
|-.+.+|+||||+||.+| .+++.+.+.++... +....-||-..||+|
T Consensus 63 ~~~~Gil~vdKP~G~TS~--------~vv~~vr~~l~~~K-vGH~GTLDP~AtGvL 109 (357)
T 2apo_A 63 LIKYGVVVVDKPRGPTSH--------EVSTWVKKILNLDK-AGHGGTLDPKVTGVL 109 (357)
T ss_dssp HHHTEEEEEEECSSSCHH--------HHHHHHHHHTTCSC-EEESSCCCTTCEEEE
T ss_pred hccCcEEEEECCCCCCHH--------HHHHHHHHHhCccc-cccccccCCCceeEE
Confidence 456789999999999887 35567777777654 344999999999997
No 26
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=86.69 E-value=0.99 Score=40.23 Aligned_cols=31 Identities=19% Similarity=0.012 Sum_probs=28.1
Q ss_pred cHHHHHHHhcC--CCHHHHHHHHHcCcEEEccc
Q 023659 111 PVLEYICRELN--LPPLFVADLIHFGAVYYALV 141 (279)
Q Consensus 111 rLd~~L~~~l~--lSr~~i~~LI~~G~V~vn~~ 141 (279)
+|.-||.++|+ .++..+++++..|.|.|||+
T Consensus 9 PL~i~LRdrLgyA~t~rEarkIv~~~~I~VDGK 41 (213)
T 3kbg_A 9 TLLSIIRDYLKLSDKEREAARILANGLVKVDGK 41 (213)
T ss_dssp EHHHHHHHHHHTTTCGGGHHHHHHTTCEEETTE
T ss_pred eeHHHHhhhhcccccHHHHHHHHHCCCEEECCE
Confidence 68999999886 67889999999999999986
No 27
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A
Probab=86.65 E-value=0.25 Score=47.73 Aligned_cols=47 Identities=19% Similarity=0.247 Sum_probs=37.7
Q ss_pred EecCcEEEEeCCCCCcccCCCCCCcCcHHHHHHHHhCCCCCccccccCCcCccccc
Q 023659 222 AVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGWR 277 (279)
Q Consensus 222 YEDedlLVVNKPaGl~VHPt~~~~~~TL~~~l~~~lg~~~~l~~VHRLDrdTSGLL 277 (279)
|-.+.+|+||||.||.+| .+++.+.+.++....+ ...-||-..||||
T Consensus 56 ~~~~Gil~ldKP~G~TS~--------dvv~~vrr~l~~kKvG-H~GTLDP~AtGvL 102 (400)
T 3u28_A 56 YISSGVINLDKPSNPSSH--------EVVAWIKRILRCEKTG-HSGTLDPKVTGCL 102 (400)
T ss_dssp HHHTEEEEEEECSSSCHH--------HHHHHHHHHHTCSCEE-ESSCCCTTCEEEE
T ss_pred hccCcEEEEECCCCCCHH--------HHHHHHHHHhCcCccc-ccCCCCCCCeEEE
Confidence 556889999999999888 3556777777766544 4999999999997
No 28
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=65.08 E-value=0.18 Score=44.43 Aligned_cols=31 Identities=6% Similarity=-0.010 Sum_probs=25.2
Q ss_pred CcHHHHHHHhcCC--CHHHHHHHHHcCcEEEccc
Q 023659 110 GPVLEYICRELNL--PPLFVADLIHFGAVYYALV 141 (279)
Q Consensus 110 grLd~~L~~~l~l--Sr~~i~~LI~~G~V~vn~~ 141 (279)
.|||.+|.. +++ ||..+++||..|.|.|||+
T Consensus 109 ~RLD~~L~r-~G~a~SR~~ArqlI~~GhV~VNG~ 141 (195)
T 3iz6_C 109 RRLQTLVFK-AGMAKSIHHARVLIRQRHIRVGRQ 141 (195)
T ss_dssp SCCCSSCCC-CCCHHHHSCTTSHHHHHSTTTSCC
T ss_pred hhhhHHHHh-ccccCCHHHHHHHHHcCCEEECCE
Confidence 478877754 554 7889999999999999986
No 29
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase, ligase; NMR {Aspergillus nidulans fgsc A4}
Probab=56.05 E-value=9.6 Score=32.50 Aligned_cols=31 Identities=10% Similarity=-0.013 Sum_probs=24.9
Q ss_pred cHHHHHHH-hcCCCHHHHHHHHHcCcEEEccc
Q 023659 111 PVLEYICR-ELNLPPLFVADLIHFGAVYYALV 141 (279)
Q Consensus 111 rLd~~L~~-~l~lSr~~i~~LI~~G~V~vn~~ 141 (279)
.|.++|.+ .|--|++.+++||..|+||||+.
T Consensus 51 ~ivdlLv~aGLa~SKsEARRlI~qGGv~VNg~ 82 (164)
T 2ktl_A 51 TFSKVLWSAGLVASKSEGQRIINNNGAYVGSR 82 (164)
T ss_dssp SHHHHHHHHTSCSTHHHHHHHHHHTCEEEEEC
T ss_pred cHHHHHHHhCcccCHHHHHHHHHhCCEEECCE
Confidence 57776653 33458999999999999999985
No 30
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=54.26 E-value=2.8 Score=32.70 Aligned_cols=17 Identities=6% Similarity=0.300 Sum_probs=13.8
Q ss_pred CCCceecCCCEEEEEcC
Q 023659 188 HVDQIVEAGTYLRVHVH 204 (279)
Q Consensus 188 ~~~~~Lk~GD~I~V~~~ 204 (279)
..++.|+.||.|+|..+
T Consensus 69 ~~d~~L~dGDRVEIyrp 85 (97)
T 2hj1_A 69 KLTDVLKEGDRIEIYRP 85 (97)
T ss_dssp CTTCBCCTTCEEEECCC
T ss_pred CCCccCCCCCEEEEEec
Confidence 35678999999999853
No 31
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=50.26 E-value=24 Score=33.99 Aligned_cols=31 Identities=13% Similarity=-0.106 Sum_probs=25.6
Q ss_pred cHHHHHHH-hcCCCHHHHHHHHHcCcEEEccc
Q 023659 111 PVLEYICR-ELNLPPLFVADLIHFGAVYYALV 141 (279)
Q Consensus 111 rLd~~L~~-~l~lSr~~i~~LI~~G~V~vn~~ 141 (279)
.+.++|.. .+--|++.++++|..|+|+|||+
T Consensus 370 ~~~~~l~~~~l~~S~~earr~i~~ggv~vn~~ 401 (432)
T 1h3f_A 370 WVARLFTLAGLTPSNAEARRLIQNRGLRLDGE 401 (432)
T ss_dssp EHHHHHHHTTSSSSHHHHHHHHHTTCEEETTE
T ss_pred cHHHHHHHhCCcccHHHHHHHHHhCCEEECCE
Confidence 57777764 23469999999999999999986
No 32
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Probab=45.88 E-value=6.2 Score=36.92 Aligned_cols=17 Identities=41% Similarity=0.575 Sum_probs=15.0
Q ss_pred cCcEEEEeCCCCCcccC
Q 023659 224 TESHVVLDKPAGTSVGG 240 (279)
Q Consensus 224 DedlLVVNKPaGl~VHP 240 (279)
.+-||+||||.||.+|.
T Consensus 5 ~~Gil~vdKP~G~TS~d 21 (316)
T 1sgv_A 5 GPGIVVIDKPAGMTSHD 21 (316)
T ss_dssp CSEEEEEEECTTCCHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 45799999999999985
No 33
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=41.58 E-value=36 Score=32.82 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=25.1
Q ss_pred cHHHHHHH-hcCCCHHHHHHHHHcCcEEEccc
Q 023659 111 PVLEYICR-ELNLPPLFVADLIHFGAVYYALV 141 (279)
Q Consensus 111 rLd~~L~~-~l~lSr~~i~~LI~~G~V~vn~~ 141 (279)
.+.++|.+ .+--|++.++++|..|+|+|||+
T Consensus 357 ~~~~ll~~~gl~~S~~earr~i~~ggv~in~~ 388 (432)
T 2jan_A 357 GIVDLLVASGLSASKGAARRTIHEGGVSVNNI 388 (432)
T ss_dssp SHHHHHHHHTSCSSHHHHHHHHTTTCEEESSC
T ss_pred hHHHHHHHhCCcccHHHHHHHHHhCCEEECCE
Confidence 57777764 23359999999999999999986
No 34
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=40.50 E-value=48 Score=23.40 Aligned_cols=14 Identities=14% Similarity=0.237 Sum_probs=11.7
Q ss_pred CCceecCCCEEEEE
Q 023659 189 VDQIVEAGTYLRVH 202 (279)
Q Consensus 189 ~~~~Lk~GD~I~V~ 202 (279)
.++.|+.||.|.|.
T Consensus 62 ~~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 62 FDHPLTDGDEVAFF 75 (81)
T ss_dssp TTCBCCTTCEEEEE
T ss_pred CCCCCCCCCEEEEe
Confidence 35689999999886
No 35
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=38.94 E-value=6.4 Score=37.80 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=0.0
Q ss_pred cHHHHHHHhcC--CCHHHHHHHHHcCcEEEccc
Q 023659 111 PVLEYICRELN--LPPLFVADLIHFGAVYYALV 141 (279)
Q Consensus 111 rLd~~L~~~l~--lSr~~i~~LI~~G~V~vn~~ 141 (279)
.|.++|.. .| -|.+.++++|..|+|+|||+
T Consensus 354 ~l~~lL~~-agl~~SksEARRlI~~GgV~VNge 385 (420)
T 1jil_A 354 NIVEVLIE-TGISPSKRQAREDVNNGAIYINGE 385 (420)
T ss_dssp ---------------------------------
T ss_pred cHHHHHHH-cCCccCHHHHHHHHHhCCEEECCE
Confidence 57777764 45 48889999999999999986
No 36
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=37.65 E-value=27 Score=31.91 Aligned_cols=32 Identities=19% Similarity=0.104 Sum_probs=27.9
Q ss_pred cHHHHHHHhcC--CCHHHHHHHHHcCcEEEcccc
Q 023659 111 PVLEYICRELN--LPPLFVADLIHFGAVYYALVC 142 (279)
Q Consensus 111 rLd~~L~~~l~--lSr~~i~~LI~~G~V~vn~~~ 142 (279)
+|.-||.+.|+ ++...+++.+..|.|.|||++
T Consensus 43 PL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkv 76 (265)
T 3iz6_D 43 PLILIIRNRLKYALTYREVISILMQRHVLVDGKV 76 (265)
T ss_dssp CHHHHHHHHHTTSSCSSSTHHHHHTTCCEETTEE
T ss_pred eeHHHhhhhhcccccHHHHHHHHHCCcEEECCEE
Confidence 68999999997 566789999999999999973
No 37
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=33.03 E-value=40 Score=29.56 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=19.5
Q ss_pred ceec-CCCEEEEEcCCCCCCCCCCCCCccceEEecCcEEEE
Q 023659 191 QIVE-AGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVL 230 (279)
Q Consensus 191 ~~Lk-~GD~I~V~~~~~~~~~~~~~~~~l~ILYEDedlLVV 230 (279)
..|+ .||.|.|. ...+.+..++++|+
T Consensus 148 ~~L~~~GD~I~ig--------------~~~~~~~~~~l~i~ 174 (238)
T 1wv3_A 148 TNKAYIGDHIYVE--------------GIWLEVQADGLNVL 174 (238)
T ss_dssp EEEEETTCEEEET--------------TEEEEECSSEEEEE
T ss_pred eeccCCcCEEEEC--------------CEEEEEECCEEEEE
Confidence 3689 99999883 24577788888874
No 38
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=32.27 E-value=56 Score=29.79 Aligned_cols=31 Identities=19% Similarity=0.118 Sum_probs=28.2
Q ss_pred cHHHHHHHhcC--CCHHHHHHHHHc--CcEEEccc
Q 023659 111 PVLEYICRELN--LPPLFVADLIHF--GAVYYALV 141 (279)
Q Consensus 111 rLd~~L~~~l~--lSr~~i~~LI~~--G~V~vn~~ 141 (279)
+|.-+|.+.|+ ++...++..+.. |.|.|||+
T Consensus 43 PL~i~LRd~LkyA~t~rEak~Il~q~~~~VkVDGk 77 (260)
T 2xzm_W 43 PLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGK 77 (260)
T ss_dssp EHHHHHTTTTCSCCSHHHHHHHTTSTTCCEEETTE
T ss_pred hhHhhhhhhhccccchhHHHHHHhccCCeEEECCE
Confidence 79999999997 788899999999 99999997
No 39
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=27.53 E-value=81 Score=23.69 Aligned_cols=15 Identities=0% Similarity=-0.104 Sum_probs=12.2
Q ss_pred CCceecCCCEEEEEc
Q 023659 189 VDQIVEAGTYLRVHV 203 (279)
Q Consensus 189 ~~~~Lk~GD~I~V~~ 203 (279)
.+..|+.||.|.|..
T Consensus 68 ~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 68 HEVELCDRDVIEIVH 82 (87)
T ss_dssp TTSBCCSSSEEEEEE
T ss_pred CCcCCCCCCEEEEEc
Confidence 357899999999873
No 40
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=27.15 E-value=86 Score=28.57 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=28.3
Q ss_pred cHHHHHHHhcC--CCHHHHHHHHHcCcEEEcccc
Q 023659 111 PVLEYICRELN--LPPLFVADLIHFGAVYYALVC 142 (279)
Q Consensus 111 rLd~~L~~~l~--lSr~~i~~LI~~G~V~vn~~~ 142 (279)
+|.-||.+.|+ ++...+++.+..|.|.|||++
T Consensus 43 PL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkv 76 (261)
T 3u5c_E 43 PLIVFLRNRLKYALNGREVKAILMQRHVKVDGKV 76 (261)
T ss_dssp EHHHHHHHTTCCCSSSHHHHHHHTTTCEEETTBC
T ss_pred eeHHHhhhhhcccccHHHHHHHHHCCcEEECCEE
Confidence 69999999997 567789999999999999973
No 41
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}
Probab=27.05 E-value=37 Score=25.88 Aligned_cols=20 Identities=10% Similarity=-0.031 Sum_probs=13.8
Q ss_pred cceEEecCcEEE-EeCCCCCc
Q 023659 218 SRIIAVTESHVV-LDKPAGTS 237 (279)
Q Consensus 218 l~ILYEDedlLV-VNKPaGl~ 237 (279)
..||||||++++ +|+=+-.+
T Consensus 18 ~~iv~e~e~~~af~d~~P~~p 38 (119)
T 4egu_A 18 STKVYEDDRVLAFNDLNPVAP 38 (119)
T ss_dssp CCEEEECSSEEEEECSSCSSS
T ss_pred CCEEEECCCEEEEECCCCCCC
Confidence 479999999886 45444333
No 42
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*
Probab=26.87 E-value=38 Score=25.83 Aligned_cols=20 Identities=15% Similarity=0.041 Sum_probs=14.0
Q ss_pred cceEEecCcEEE-EeCCCCCc
Q 023659 218 SRIIAVTESHVV-LDKPAGTS 237 (279)
Q Consensus 218 l~ILYEDedlLV-VNKPaGl~ 237 (279)
..||||||++++ +|+=+-.+
T Consensus 21 ~~iv~e~~~~~af~d~~P~~p 41 (117)
T 3oj7_A 21 STIVYEDDEIFAFKDINPIAP 41 (117)
T ss_dssp CCEEEECSSEEEEECSSCSSS
T ss_pred CCEEEECCcEEEEECCCCCCC
Confidence 479999999886 55544333
No 43
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*
Probab=26.46 E-value=38 Score=26.09 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=13.1
Q ss_pred ccceEEecCcEEEE-eCCC
Q 023659 217 NSRIIAVTESHVVL-DKPA 234 (279)
Q Consensus 217 ~l~ILYEDedlLVV-NKPa 234 (279)
+..||||||+++++ |+=+
T Consensus 16 ~~~iv~ede~~~af~d~~P 34 (119)
T 3n1s_A 16 PSDIVYQDDLVTAFRDISP 34 (119)
T ss_dssp CCCEEEECSSEEEEECSSC
T ss_pred cCCEEEECCCEEEEECCCC
Confidence 34799999998865 4433
No 44
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Probab=26.26 E-value=39 Score=26.29 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=12.3
Q ss_pred ccceEEecCcEEEE-eC
Q 023659 217 NSRIIAVTESHVVL-DK 232 (279)
Q Consensus 217 ~l~ILYEDedlLVV-NK 232 (279)
+..||||||+++++ |+
T Consensus 28 ~~~iv~e~e~~~af~d~ 44 (126)
T 3o1c_A 28 PAKIIFEDDQALAFHDI 44 (126)
T ss_dssp CCCEEEECSSEEEEECS
T ss_pred cCCEEEECCCEEEEECC
Confidence 35799999998875 44
No 45
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=25.25 E-value=15 Score=35.32 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=0.0
Q ss_pred cHHHHHHH-hcCCCHHHHHHHHHcCcEEEccc
Q 023659 111 PVLEYICR-ELNLPPLFVADLIHFGAVYYALV 141 (279)
Q Consensus 111 rLd~~L~~-~l~lSr~~i~~LI~~G~V~vn~~ 141 (279)
.+.++|.+ .+--|++.++++|..|+|+|||+
T Consensus 353 ~~~~~l~~~gl~~S~~earr~i~~ggv~in~~ 384 (419)
T 2ts1_A 353 PLVELLVSAGISPSKRQAREDIQNGAIYVNGE 384 (419)
T ss_dssp --------------------------------
T ss_pred cHHHHHHHhCCCCCHHHHHHHHHhCCEEECCE
Confidence 46666653 22358899999999999999986
No 46
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0
Probab=21.64 E-value=52 Score=26.56 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=12.4
Q ss_pred ccceEEecCcEEEE-eC
Q 023659 217 NSRIIAVTESHVVL-DK 232 (279)
Q Consensus 217 ~l~ILYEDedlLVV-NK 232 (279)
+-.||||||+++++ |.
T Consensus 24 p~~iV~ed~~~~af~d~ 40 (149)
T 3ksv_A 24 PCAKVAETSKALAFMDI 40 (149)
T ss_dssp CCCEEEECSSEEEEECS
T ss_pred CccEEEECCCEEEEECC
Confidence 45799999999864 44
No 47
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=21.33 E-value=54 Score=25.65 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=11.9
Q ss_pred cceEEecCcEEEE-eC
Q 023659 218 SRIIAVTESHVVL-DK 232 (279)
Q Consensus 218 l~ILYEDedlLVV-NK 232 (279)
..|||||++++++ |+
T Consensus 19 ~~iV~e~~~~~af~d~ 34 (138)
T 3p0t_A 19 GRFVYEDDDVVAFLTI 34 (138)
T ss_dssp CCEEEECSSEEEEECS
T ss_pred cCEEEeCCCEEEEecC
Confidence 4799999999875 44
No 48
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1
Probab=20.52 E-value=57 Score=26.40 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=15.5
Q ss_pred ccceEEecCcEEEE-eCCCCCccc
Q 023659 217 NSRIIAVTESHVVL-DKPAGTSVG 239 (279)
Q Consensus 217 ~l~ILYEDedlLVV-NKPaGl~VH 239 (279)
+..||||||+++|+ |+-+-.+.|
T Consensus 48 ~~~iV~e~e~~~af~d~~P~~pgH 71 (147)
T 1xqu_A 48 PSTIYYEDERVIAIKDINPAAPVH 71 (147)
T ss_dssp CBCEEEECSSEEEEECSSCSSSEE
T ss_pred CcEEEEECCcEEEEEecCCCCccE
Confidence 45899999997765 555444444
No 49
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=20.35 E-value=57 Score=27.31 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=21.2
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHcCcEE
Q 023659 111 PVLEYICRELNLPPLFVADLIHFGAVY 137 (279)
Q Consensus 111 rLd~~L~~~l~lSr~~i~~LI~~G~V~ 137 (279)
++.+ +++.|++|++.+++||+.|.+.
T Consensus 33 Tv~E-VAe~LgVs~srV~~LIr~G~L~ 58 (148)
T 2kfs_A 33 DLPR-VAELLGVPVSKVAQQLREGHLV 58 (148)
T ss_dssp EHHH-HHHHHTCCHHHHHHHHHTTSCC
T ss_pred cHHH-HHHHhCCCHHHHHHHHHCCCce
Confidence 4666 4577999999999999998754
Done!