BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023660
         (279 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q47319|YFIP_ECOLI DTW domain-containing protein YfiP OS=Escherichia coli (strain K12)
           GN=yfiP PE=3 SV=2
          Length = 232

 Score = 34.7 bits (78), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 144 GSQGYLCQKCWIAMEDCMCSKVKHCSLWYGVRFWLYMHPKDFLRQNNTGKLLWQVL 199
           G++   CQ+C +  + C+CS +         RF L M   + ++ +NTG+L+  +L
Sbjct: 25  GNRVRRCQRCLLPEKLCLCSTITPAQ--AKSRFCLLMFDTEPMKPSNTGRLIADIL 78


>sp|B5XNX3|MENC_KLEP3 o-succinylbenzoate synthase OS=Klebsiella pneumoniae (strain 342)
          GN=menC PE=3 SV=1
          Length = 321

 Score = 32.3 bits (72), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 47 RETHIGDTDDGFITLQE--WQGWGAVSPLPALVQQIVED 83
          RE  +   D  FI LQE   +GWG +SPLP    + +E+
Sbjct: 20 RERRLKTRDGLFIRLQEDEREGWGEISPLPGFSNETLEE 58


>sp|A6TBV5|MENC_KLEP7 o-succinylbenzoate synthase OS=Klebsiella pneumoniae subsp.
          pneumoniae (strain ATCC 700721 / MGH 78578) GN=menC
          PE=3 SV=1
          Length = 321

 Score = 31.6 bits (70), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 47 RETHIGDTDDGFITLQEWQ--GWGAVSPLPALVQQIVED 83
          RE  +   D  FI LQE +  GWG +SPLP    + +E+
Sbjct: 20 RERRLKTRDGLFIRLQEGEREGWGEISPLPGFSVETLEE 58


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.135    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,722,235
Number of Sequences: 539616
Number of extensions: 4313515
Number of successful extensions: 10643
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 10642
Number of HSP's gapped (non-prelim): 4
length of query: 279
length of database: 191,569,459
effective HSP length: 116
effective length of query: 163
effective length of database: 128,974,003
effective search space: 21022762489
effective search space used: 21022762489
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (27.7 bits)