Query 023660
Match_columns 279
No_of_seqs 96 out of 104
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 10:38:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023660.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023660hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1s4k_A Putative cytoplasmic pr 49.0 7.6 0.00026 32.1 1.9 29 58-87 29-59 (120)
2 3oei_C RELK (toxin RV3358); to 32.7 31 0.0011 26.6 3.0 44 75-123 34-83 (96)
3 1sra_A Sparc; extracellular ma 13.9 52 0.0018 27.6 0.8 13 54-66 124-136 (151)
4 2bze_A KIAA0252 protein; human 13.8 1.3E+02 0.0044 24.8 3.2 37 50-86 107-150 (153)
5 2kz0_A BOLA family protein; BO 13.7 41 0.0014 25.1 0.1 13 114-126 52-64 (76)
6 2w6a_A ARF GTPase-activating p 13.3 57 0.0019 24.2 0.8 14 52-65 3-16 (63)
7 3cni_A Putative ABC type-2 tra 12.5 2.1E+02 0.0073 22.2 4.0 57 172-240 9-68 (156)
8 1k9u_A Polcalcin PHL P 7; poll 11.9 1E+02 0.0034 20.3 1.7 27 54-82 15-45 (78)
9 1xs3_A Hypothetical protein XC 11.0 53 0.0018 24.6 0.0 15 114-128 50-64 (80)
10 2a6s_A Toxin YOEB; YEFM, antit 11.0 2E+02 0.0068 19.8 3.1 19 104-122 52-70 (84)
No 1
>1s4k_A Putative cytoplasmic protein YDIL; structural genomics, MCSG, PSI, PROT structure initiative; 1.90A {Salmonella typhimurium} SCOP: a.35.1.6
Probab=49.00 E-value=7.6 Score=32.12 Aligned_cols=29 Identities=24% Similarity=0.509 Sum_probs=22.6
Q ss_pred ccchhhhccc--CCCCCchHHHHHHHHHHHHH
Q 023660 58 FITLQEWQGW--GAVSPLPALVQQIVEDLKAL 87 (279)
Q Consensus 58 ~~~~~ew~~w--g~~sp~p~~v~~~v~~l~~~ 87 (279)
+++.+.||.| |+ .++|..|.+.+..++..
T Consensus 29 ~vs~rtWQqWE~G~-~~IP~~i~e~~~~m~~~ 59 (120)
T 1s4k_A 29 DNNSATWQRWEAGD-IPISPEIIARLKEMKAR 59 (120)
T ss_dssp SCCHHHHHHHHHTS-SCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHCCC-CCCCHHHHHHHHHHHHH
Confidence 6899999999 65 57888888777766543
No 2
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein complex, tuberculos structural genomics consortium, protein binding; HET: MLZ FLC; 2.15A {Mycobacterium tuberculosis} SCOP: d.298.1.0
Probab=32.69 E-value=31 Score=26.64 Aligned_cols=44 Identities=25% Similarity=0.436 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccCCCCC--Cccc----ccccccccccchhhhhh
Q 023660 75 ALVQQIVEDLKALEKNFDAPMSFGGNGG--RLQG----DFKILEDKKHRATYQTL 123 (279)
Q Consensus 75 ~~v~~~v~~l~~~~~~~~~~~~f~~~~~--~l~g----~~~~~edkkhrl~~qrL 123 (279)
....+|.+-|+.+.++ +|.|.|- +|+| -++.-=+.++|+.|+=.
T Consensus 34 ~~~krI~~~I~~l~~n-----P~~g~gK~e~Lkg~l~g~~s~RI~~~yRivy~i~ 83 (96)
T 3oei_C 34 KTARRITRLIGEIQRD-----PFSGIGKPEPLQGELSGYWSRRIDDEHRLVYRAG 83 (96)
T ss_dssp HHHHHHHHHHHHHHHC-----TTSSTTCCEECCGGGTTCEEEESSSSCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhC-----CCcCCCchhhcCCCCCCcEEEECCCCEEEEEEEE
Confidence 4444555545555432 4555443 4555 45555577888888743
No 3
>1sra_A Sparc; extracellular matrix protein, calcium-binding protein; 2.00A {Homo sapiens} SCOP: a.39.1.3
Probab=13.85 E-value=52 Score=27.63 Aligned_cols=13 Identities=46% Similarity=1.142 Sum_probs=10.1
Q ss_pred CCCCccchhhhcc
Q 023660 54 TDDGFITLQEWQG 66 (279)
Q Consensus 54 ~~~~~~~~~ew~~ 66 (279)
.+||.||++||-.
T Consensus 124 d~Dg~ISl~Ew~~ 136 (151)
T 1sra_A 124 DNDKYIALDEWAG 136 (151)
T ss_dssp TCSSSEEHHHHHH
T ss_pred CCCCcCCHHHHHH
Confidence 3569999999953
No 4
>2bze_A KIAA0252 protein; human RTF1 PLUS3 domain, transcription, elongation, PAF1 complex, histone H3 methylation, H2B ubiquitination, CDC73, LEO1, CTR9; NMR {Homo sapiens} SCOP: b.34.21.1
Probab=13.78 E-value=1.3e+02 Score=24.81 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=23.9
Q ss_pred ccCCCCCCccchhhhccc-------CCCCCchHHHHHHHHHHHH
Q 023660 50 HIGDTDDGFITLQEWQGW-------GAVSPLPALVQQIVEDLKA 86 (279)
Q Consensus 50 ~~~~~~~~~~~~~ew~~w-------g~~sp~p~~v~~~v~~l~~ 86 (279)
++...++..+|.+||++| |-.-|-...|.+=.+||+.
T Consensus 107 ~m~~vSN~~fte~Ef~~w~~~~~~~~~~~PT~~~v~~K~~~i~~ 150 (153)
T 2bze_A 107 RLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKE 150 (153)
T ss_dssp CGGGBCCSCCCHHHHHHHHHHHHHHTCCCCBHHHHHHHHHHHHH
T ss_pred EeeEeeCCCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 344667789999999999 3334444555555555543
No 5
>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis}
Probab=13.65 E-value=41 Score=25.13 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=11.6
Q ss_pred cccchhhhhhhhh
Q 023660 114 KKHRATYQTLGES 126 (279)
Q Consensus 114 kkhrl~~qrLa~S 126 (279)
||||+.|+.|++-
T Consensus 52 ~rHr~Vy~~L~~e 64 (76)
T 2kz0_A 52 EQHRMIYKVLDGL 64 (76)
T ss_dssp HHHHHHHHHTTTS
T ss_pred HHHHHHHHHhccC
Confidence 6999999999875
No 6
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=13.34 E-value=57 Score=24.23 Aligned_cols=14 Identities=43% Similarity=0.598 Sum_probs=10.1
Q ss_pred CCCCCCccchhhhc
Q 023660 52 GDTDDGFITLQEWQ 65 (279)
Q Consensus 52 ~~~~~~~~~~~ew~ 65 (279)
-|-.||.||+||+=
T Consensus 3 ~dlsDgpit~qeyl 16 (63)
T 2w6a_A 3 LGSSDGAVTLQEYL 16 (63)
T ss_dssp CC--CCSSCHHHHH
T ss_pred CcccCCcchHHHHH
Confidence 37789999999984
No 7
>3cni_A Putative ABC type-2 transporter; structural genomics, thermotoga MARI PSI-2, protein structure initiative; 2.30A {Thermotoga maritima MSB8}
Probab=12.45 E-value=2.1e+02 Score=22.24 Aligned_cols=57 Identities=16% Similarity=0.136 Sum_probs=37.7
Q ss_pred cCcEEEEEecCCcccCCCchhhHHHHhhhccchhhcccCCC---ccHHHHHHHHHhcCCCceEEEecCCCCC
Q 023660 172 YGVRFWLYMHPKDFLRQNNTGKLLWQVLGVQAATLCLYGVA---EDEEIMWSAFKRAGKSKVWCLYPNKNAI 240 (279)
Q Consensus 172 s~irF~LLMHpnE~lKpSNTGRLIadvLp~dt~af~~WgRt---E~E~~LW~rl~~~p~~qp~lLFPse~s~ 240 (279)
.+..+.++-+++ +..+|-|.+-|. |- |... ......-+++.+ +++..+|++|.+.+.
T Consensus 9 ~~~~vaVvd~D~-----s~~s~~l~~~l~-----~~-~~~~~~~~s~~ea~~~l~~-g~~~~~l~IP~~Fs~ 68 (156)
T 3cni_A 9 VGQKVAIVREDT-----GTIAELAEKALG-----NM-VDIVYAGSDLKEAEEAVKK-EKAPAIIVIPKGFSQ 68 (156)
T ss_dssp --CEEEEEECCC-----SHHHHHHHHHHH-----TS-SEEEEEESCHHHHHHHHHH-HTCSEEEEECTTHHH
T ss_pred CCCcEEEEECCC-----CHHHHHHHHHhc-----Cc-EEEEecCCCHHHHHHHHHc-CCeeEEEEECcchHH
Confidence 456777787774 456777766553 22 2222 356677788888 999999999988754
No 8
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=11.90 E-value=1e+02 Score=20.30 Aligned_cols=27 Identities=33% Similarity=0.414 Sum_probs=17.0
Q ss_pred CCCCccchhhhccc----CCCCCchHHHHHHHH
Q 023660 54 TDDGFITLQEWQGW----GAVSPLPALVQQIVE 82 (279)
Q Consensus 54 ~~~~~~~~~ew~~w----g~~sp~p~~v~~~v~ 82 (279)
.++|.|+.+|++.+ | .+-+..+..++.
T Consensus 15 ~~~G~i~~~el~~~l~~~g--~~~~~~~~~~~~ 45 (78)
T 1k9u_A 15 NGDGKISLSELTDALRTLG--STSADEVQRMMA 45 (78)
T ss_dssp TCSSEECHHHHHHHHHHHH--TCCHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 35699999999866 5 333444444433
No 9
>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic}
Probab=11.03 E-value=53 Score=24.62 Aligned_cols=15 Identities=47% Similarity=0.698 Sum_probs=12.5
Q ss_pred cccchhhhhhhhhhh
Q 023660 114 KKHRATYQTLGESEK 128 (279)
Q Consensus 114 kkhrl~~qrLa~S~r 128 (279)
||||++|+.|++--+
T Consensus 50 ~RHrlVy~~L~~e~~ 64 (80)
T 1xs3_A 50 ARHRMVYATLGELMG 64 (80)
T ss_dssp HHHHHHHHHTTSTTT
T ss_pred HHHHHHHHHHHHHHc
Confidence 699999999998543
No 10
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E
Probab=11.02 E-value=2e+02 Score=19.78 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=10.9
Q ss_pred cccccccccccccchhhhh
Q 023660 104 LQGDFKILEDKKHRATYQT 122 (279)
Q Consensus 104 l~g~~~~~edkkhrl~~qr 122 (279)
++|-++..=+..+|+.|+-
T Consensus 52 ~~g~~~~ri~~~yRiiY~i 70 (84)
T 2a6s_A 52 LSGFWSRRITEEHRLVYAV 70 (84)
T ss_dssp GTTCEEEESSSSCEEEEEE
T ss_pred CCCEEEEEECCCeEEEEEE
Confidence 3443444445668888863
Done!