Query 023660
Match_columns 279
No_of_seqs 96 out of 104
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 10:39:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023660.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023660hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1s4ka_ a.35.1.6 (A:) Putative 35.4 8.6 0.00062 29.9 2.2 33 57-90 28-62 (120)
2 d1oyja1 a.45.1.1 (A:86-230) Cl 33.1 19 0.0014 26.4 3.8 30 74-103 46-75 (145)
3 d1y9qa2 b.82.1.15 (A:83-181) P 32.0 12 0.00088 26.0 2.4 53 224-278 4-58 (99)
4 d1g8ia_ a.39.1.5 (A:) Frequeni 19.1 11 0.0008 28.2 -0.0 19 54-72 156-174 (187)
5 d2bzea1 b.34.21.1 (A:345-476) 18.4 40 0.0029 25.1 3.2 18 50-67 86-103 (132)
6 d2a6sa1 d.298.1.1 (A:1-83) Tox 18.2 45 0.0033 23.5 3.2 57 61-124 10-72 (83)
7 d1snla_ a.39.1.7 (A:) Nucleobi 13.8 18 0.0013 24.9 -0.0 14 54-67 80-93 (99)
8 d1ffya1 a.27.1.1 (A:645-917) I 13.5 23 0.0017 28.5 0.6 14 144-157 236-249 (273)
9 d1s6ca_ a.39.1.5 (A:) Kchip1, 12.7 26 0.0019 25.6 0.6 19 54-72 147-165 (178)
10 d1zy9a1 b.30.5.11 (A:1-177) Al 12.6 22 0.0016 29.0 0.2 14 58-71 56-69 (177)
No 1
>d1s4ka_ a.35.1.6 (A:) Putative cytoplasmic protein YdiL {Salmonella typhimurium [TaxId: 90371]}
Probab=35.42 E-value=8.6 Score=29.86 Aligned_cols=33 Identities=21% Similarity=0.460 Sum_probs=24.5
Q ss_pred Cccchhhhccc--CCCCCchHHHHHHHHHHHHHHHh
Q 023660 57 GFITLQEWQGW--GAVSPLPALVQQIVEDLKALEKN 90 (279)
Q Consensus 57 ~~~~~~ew~~w--g~~sp~p~~v~~~v~~l~~~~~~ 90 (279)
|+++.+-||+| |. -++|..|.+.+-.+++..+.
T Consensus 28 ~~~~s~tWQqWE~Gd-~~IP~~Vi~~l~~m~~~R~~ 62 (120)
T d1s4ka_ 28 QDNNSATWQRWEAGD-IPISPEIIARLKEMKARRQR 62 (120)
T ss_dssp SSCCHHHHHHHHHTS-SCCCHHHHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHH
Confidence 56788999999 64 57888887777777665443
No 2
>d1oyja1 a.45.1.1 (A:86-230) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}
Probab=33.06 E-value=19 Score=26.36 Aligned_cols=30 Identities=33% Similarity=0.535 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCccCCCCCC
Q 023660 74 PALVQQIVEDLKALEKNFDAPMSFGGNGGR 103 (279)
Q Consensus 74 p~~v~~~v~~l~~~~~~~~~~~~f~~~~~~ 103 (279)
-.+..++.+-|..+|+.++.+--|||.+|.
T Consensus 46 e~a~~~~~~~L~~lE~~l~~~~~~~g~~g~ 75 (145)
T d1oyja1 46 AAAGREMAEILRTLEAELGDREFFGGGGGG 75 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSSSSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHccCCCCCCCCcC
Confidence 456788999999999999998888988764
No 3
>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=32.01 E-value=12 Score=26.00 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=29.7
Q ss_pred hcCCCceEEEecCCCCCcceeeec-ccCCCCCCCccCC-CCCCceeEEEeccccccc
Q 023660 224 RAGKSKVWCLYPNKNAIKMSVQDT-LGYGSSEDLEYTP-MMAVTQMLVLLHRLMEIT 278 (279)
Q Consensus 224 ~~p~~qp~lLFPse~s~~~s~v~~-~~~~~s~~~~~~~-~~~K~PLFILLDGT~~~~ 278 (279)
+++++....|||.+.....+.... +. ........+ ..+-.-.+++|+|+++++
T Consensus 4 ~d~~~~~~~l~p~~~~~~~e~~~~~l~--pg~~~~~~~H~h~~~E~~~Vl~G~~~~~ 58 (99)
T d1y9qa2 4 DDLNMKIHTLFPYAADTGLEIFEITLL--DHHQQMSSPHALGVIEYIHVLEGIMKVF 58 (99)
T ss_dssp TCTTEEEEEEEEEETTTTEEEEEEEEC--TTCEEEECCCSTTCEEEEEEEESCEEEE
T ss_pred CCCCeEEEEEecCCCcCCEEEEEEEEe--CCcEeccccccCCcEEEEEEEcCceEEE
Confidence 457888889999776555443311 11 111011111 112246799999999875
No 4
>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.12 E-value=11 Score=28.21 Aligned_cols=19 Identities=42% Similarity=0.588 Sum_probs=15.1
Q ss_pred CCCCccchhhhcccCCCCC
Q 023660 54 TDDGFITLQEWQGWGAVSP 72 (279)
Q Consensus 54 ~~~~~~~~~ew~~wg~~sp 72 (279)
.+||.||.+||..|-...|
T Consensus 156 d~dG~Is~~EF~~~~~~~p 174 (187)
T d1g8ia_ 156 NADGKLTLQEFQEGSKADP 174 (187)
T ss_dssp SCSSEEEHHHHHHHHHHCH
T ss_pred CCCCcEeHHHHHHHHHHCH
Confidence 4569999999999865554
No 5
>d2bzea1 b.34.21.1 (A:345-476) RNA polymerase-associated protein RTF1 homolog {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.43 E-value=40 Score=25.06 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=14.9
Q ss_pred ccCCCCCCccchhhhccc
Q 023660 50 HIGDTDDGFITLQEWQGW 67 (279)
Q Consensus 50 ~~~~~~~~~~~~~ew~~w 67 (279)
++...+|..+|.+||++|
T Consensus 86 ~l~~vSn~~fte~E~~~w 103 (132)
T d2bzea1 86 RLEFVSNQEFTESEFMKW 103 (132)
T ss_dssp CGGGBCCSCCCHHHHHHH
T ss_pred EeEEEeCCCCCHHHHHHH
Confidence 344677889999999999
No 6
>d2a6sa1 d.298.1.1 (A:1-83) Toxin YoeB {Escherichia coli [TaxId: 562]}
Probab=18.19 E-value=45 Score=23.51 Aligned_cols=57 Identities=19% Similarity=0.377 Sum_probs=33.5
Q ss_pred hhhhcccCCCCCchHHHHHHHHHHHHHHHhcCCCCccCC--CCCCcccc----cccccccccchhhhhhh
Q 023660 61 LQEWQGWGAVSPLPALVQQIVEDLKALEKNFDAPMSFGG--NGGRLQGD----FKILEDKKHRATYQTLG 124 (279)
Q Consensus 61 ~~ew~~wg~~sp~p~~v~~~v~~l~~~~~~~~~~~~f~~--~~~~l~g~----~~~~edkkhrl~~qrLa 124 (279)
.+++..|=... |..+.+|..=|.++.+. +|-| .+-+|+|+ ..--=|++||++|+-..
T Consensus 10 ~~d~~~~~~~d--~k~~kkI~~ll~~i~~~-----p~~g~gkpE~Lkg~l~g~wSrRI~~~~RlVY~v~d 72 (83)
T d2a6sa1 10 WDDYLYWQETD--KRIVKKINELIKDTRRT-----PFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTD 72 (83)
T ss_dssp HHHHHHHHTTC--HHHHHHHHHHHHHHHHS-----TTSSTTCCEECCGGGTTCEEEESSSSCEEEEEECS
T ss_pred HHHHHHHHHhC--HHHHHHHHHHHHHHHhC-----cCCCCCCCccccCCCCCEEEEEeCCCceEEEEEeC
Confidence 34555563333 56766666666666543 3433 33445554 44556889999998644
No 7
>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.77 E-value=18 Score=24.94 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=11.1
Q ss_pred CCCCccchhhhccc
Q 023660 54 TDDGFITLQEWQGW 67 (279)
Q Consensus 54 ~~~~~~~~~ew~~w 67 (279)
.+||.||.+||..+
T Consensus 80 d~DG~Is~~EF~~~ 93 (99)
T d1snla_ 80 NQDRLVTLEEFLAS 93 (99)
T ss_dssp SCSSEEEHHHHHHH
T ss_pred CCCCcCcHHHHHHH
Confidence 45599999999753
No 8
>d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=13.48 E-value=23 Score=28.53 Aligned_cols=14 Identities=29% Similarity=0.895 Sum_probs=11.0
Q ss_pred CCCcccccccCCcC
Q 023660 144 GSQGYLCQKCWIAM 157 (279)
Q Consensus 144 Gsr~~rC~~C~Lp~ 157 (279)
-+.+.+|++||--.
T Consensus 236 ~a~g~KC~RCW~~~ 249 (273)
T d1ffya1 236 HADGEKCERCWNYS 249 (273)
T ss_dssp ECSSEECTTTCCEE
T ss_pred eCCCCcCcCCCCCC
Confidence 35688999999854
No 9
>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=12.69 E-value=26 Score=25.60 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=16.3
Q ss_pred CCCCccchhhhcccCCCCC
Q 023660 54 TDDGFITLQEWQGWGAVSP 72 (279)
Q Consensus 54 ~~~~~~~~~ew~~wg~~sp 72 (279)
.+||.||.+||..|=...|
T Consensus 147 d~DG~Is~~EF~~~i~~~~ 165 (178)
T d1s6ca_ 147 NKDGIVTLDEFLESCQEDD 165 (178)
T ss_dssp TCSSEECHHHHHHHTTSCC
T ss_pred CCCCcEeHHHHHHHHHHCH
Confidence 4679999999999977776
No 10
>d1zy9a1 b.30.5.11 (A:1-177) Alpha-galactosidase GalA N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=12.57 E-value=22 Score=29.02 Aligned_cols=14 Identities=29% Similarity=0.954 Sum_probs=10.3
Q ss_pred ccchhhhcccCCCC
Q 023660 58 FITLQEWQGWGAVS 71 (279)
Q Consensus 58 ~~~~~ew~~wg~~s 71 (279)
.|=.--||+||.+-
T Consensus 56 ~i~iNNWQSWgP~k 69 (177)
T d1zy9a1 56 KVLVNNWQSWGPCR 69 (177)
T ss_dssp EEEEECSBTTSCEE
T ss_pred eeEEeccccccceE
Confidence 45667799999754
Done!