Query 023663
Match_columns 279
No_of_seqs 136 out of 1151
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 05:43:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023663.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023663hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0547 TrpD Anthranilate phos 100.0 1.6E-81 3.6E-86 576.5 30.9 273 1-273 63-337 (338)
2 PLN02641 anthranilate phosphor 100.0 2.8E-79 6.2E-84 566.9 30.7 276 1-276 62-337 (343)
3 PRK07394 hypothetical protein; 100.0 2.2E-76 4.7E-81 548.6 30.8 266 1-269 68-341 (342)
4 TIGR01245 trpD anthranilate ph 100.0 7.3E-74 1.6E-78 530.7 29.9 270 1-270 56-329 (330)
5 PRK00188 trpD anthranilate pho 100.0 5.3E-73 1.2E-77 526.9 31.1 274 1-274 62-337 (339)
6 PRK14607 bifunctional glutamin 100.0 3E-73 6.6E-78 556.2 30.7 275 1-275 254-531 (534)
7 PRK09522 bifunctional glutamin 100.0 4.4E-73 9.5E-78 552.6 29.4 270 1-271 259-530 (531)
8 PF00591 Glycos_transf_3: Glyc 100.0 5.2E-74 1.1E-78 514.2 19.7 250 13-262 2-252 (252)
9 PRK08136 glycosyl transferase 100.0 7.4E-68 1.6E-72 485.6 25.3 244 1-250 66-316 (317)
10 PRK09071 hypothetical protein; 100.0 3.3E-65 7.1E-70 469.9 26.5 247 1-259 67-318 (323)
11 KOG1438 Anthranilate phosphori 100.0 5.7E-66 1.2E-70 450.9 18.5 262 12-273 102-370 (373)
12 PRK06078 pyrimidine-nucleoside 100.0 1.8E-47 4E-52 361.2 24.1 235 1-274 62-318 (434)
13 TIGR02644 Y_phosphoryl pyrimid 100.0 5.3E-42 1.2E-46 321.9 21.5 233 1-274 60-316 (405)
14 PRK04350 thymidine phosphoryla 100.0 2.4E-40 5.3E-45 315.7 22.3 235 1-274 140-394 (490)
15 PRK05820 deoA thymidine phosph 100.0 7.2E-35 1.6E-39 276.0 16.1 239 1-274 63-322 (440)
16 TIGR02643 T_phosphoryl thymidi 100.0 5.3E-34 1.2E-38 269.0 18.3 240 1-274 62-321 (437)
17 TIGR02645 ARCH_P_rylase putati 100.0 1E-31 2.2E-36 256.5 24.8 237 1-274 145-399 (493)
18 TIGR03327 AMP_phos AMP phospho 100.0 5.6E-31 1.2E-35 251.5 20.1 237 1-274 146-399 (500)
19 COG0213 DeoA Thymidine phospho 99.9 9.3E-22 2E-26 182.5 14.8 229 12-275 77-320 (435)
20 PF13344 Hydrolase_6: Haloacid 77.4 2.4 5.1E-05 32.4 2.8 58 14-71 2-59 (101)
21 PRK10444 UMP phosphatase; Prov 70.9 12 0.00027 33.2 6.2 71 14-84 5-80 (248)
22 PRK05703 flhF flagellar biosyn 69.2 50 0.0011 32.0 10.4 135 13-158 222-366 (424)
23 TIGR01457 HAD-SF-IIA-hyp2 HAD- 67.3 60 0.0013 28.7 9.9 71 14-84 5-80 (249)
24 PF02374 ArsA_ATPase: Anion-tr 61.3 6.1 0.00013 36.4 2.3 44 17-65 6-49 (305)
25 PRK11889 flhF flagellar biosyn 56.4 1.6E+02 0.0034 28.7 10.9 131 13-158 242-386 (436)
26 TIGR01458 HAD-SF-IIA-hyp3 HAD- 56.3 32 0.00068 30.7 6.0 73 14-86 5-86 (257)
27 PF00448 SRP54: SRP54-type pro 54.6 46 0.00099 28.5 6.5 131 14-158 3-149 (196)
28 cd00443 ADA_AMPD Adenosine/AMP 53.8 66 0.0014 29.4 7.9 122 15-151 139-275 (305)
29 PRK14723 flhF flagellar biosyn 53.0 3E+02 0.0065 29.0 13.1 134 12-158 185-332 (767)
30 cd00287 ribokinase_pfkB_like r 51.1 79 0.0017 25.9 7.4 17 33-49 41-57 (196)
31 COG2313 IndA Uncharacterized e 48.7 19 0.00041 32.5 3.2 78 18-98 102-195 (310)
32 COG1393 ArsC Arsenate reductas 48.2 23 0.0005 28.0 3.3 89 66-158 6-98 (117)
33 cd02117 NifH_like This family 47.1 15 0.00032 31.5 2.3 32 15-48 3-34 (212)
34 PF08844 DUF1815: Domain of un 45.8 98 0.0021 23.6 6.1 50 140-195 20-70 (105)
35 cd02037 MRP-like MRP (Multiple 44.9 20 0.00043 29.5 2.7 31 18-50 6-36 (169)
36 TIGR00676 fadh2 5,10-methylene 43.9 46 0.001 30.0 5.1 70 78-160 21-96 (272)
37 PRK13230 nitrogenase reductase 43.9 17 0.00037 32.6 2.3 32 15-48 4-35 (279)
38 COG2313 IndA Uncharacterized e 43.7 2E+02 0.0042 26.2 8.7 53 18-71 130-185 (310)
39 TIGR00677 fadh2_euk methylenet 43.0 53 0.0012 29.9 5.4 70 78-160 22-97 (281)
40 COG1212 KdsB CMP-2-keto-3-deox 42.4 2.5E+02 0.0055 25.1 10.3 138 69-221 47-215 (247)
41 COG0761 lytB 4-Hydroxy-3-methy 42.2 65 0.0014 29.6 5.7 76 34-109 106-185 (294)
42 COG0106 HisA Phosphoribosylfor 42.0 1.1E+02 0.0025 27.3 7.1 80 72-154 31-125 (241)
43 PRK12724 flagellar biosynthesi 41.9 1.5E+02 0.0032 28.9 8.4 136 13-158 224-368 (432)
44 cd02032 Bchl_like This family 41.6 18 0.0004 32.1 2.1 31 16-48 4-34 (267)
45 COG0489 Mrp ATPases involved i 41.3 19 0.00042 32.4 2.2 32 17-50 63-94 (265)
46 TIGR01287 nifH nitrogenase iro 39.9 20 0.00044 32.0 2.1 31 15-47 3-33 (275)
47 PF11501 Nsp1: Non structural 39.6 27 0.00059 26.7 2.4 22 239-260 17-38 (115)
48 COG0563 Adk Adenylate kinase a 39.5 1.1E+02 0.0025 25.7 6.6 88 17-109 5-104 (178)
49 cd01983 Fer4_NifH The Fer4_Nif 39.5 24 0.00053 24.9 2.2 31 17-49 4-34 (99)
50 PF02641 DUF190: Uncharacteriz 39.3 46 0.001 25.3 3.8 30 134-163 17-47 (101)
51 cd02040 NifH NifH gene encodes 39.3 21 0.00046 31.4 2.2 31 15-47 4-34 (270)
52 COG1936 Predicted nucleotide k 37.8 26 0.00056 29.9 2.3 26 15-46 3-28 (180)
53 PRK13232 nifH nitrogenase redu 37.7 24 0.00051 31.5 2.2 32 15-48 4-35 (273)
54 cd00537 MTHFR Methylenetetrahy 36.3 89 0.0019 28.0 5.7 73 75-160 18-96 (274)
55 COG1348 NifH Nitrogenase subun 36.2 45 0.00098 30.0 3.6 61 15-77 4-74 (278)
56 PRK12737 gatY tagatose-bisphos 36.1 43 0.00093 30.7 3.6 35 18-54 180-214 (284)
57 PRK04531 acetylglutamate kinas 36.0 1.2E+02 0.0027 29.1 6.9 98 38-161 62-174 (398)
58 PF00142 Fer4_NifH: 4Fe-4S iro 35.3 23 0.0005 32.2 1.7 36 15-52 3-38 (273)
59 PRK12726 flagellar biosynthesi 35.2 2.2E+02 0.0047 27.6 8.3 83 12-98 206-300 (407)
60 KOG4201 Anthranilate synthase 35.2 1.2E+02 0.0027 26.9 6.0 118 69-187 88-223 (289)
61 TIGR02016 BchX chlorophyllide 35.0 29 0.00063 31.7 2.4 36 15-52 3-38 (296)
62 PF01656 CbiA: CobQ/CobB/MinD/ 34.5 26 0.00057 28.8 1.9 29 18-48 5-33 (195)
63 PRK13185 chlL protochlorophyll 34.5 28 0.00061 30.9 2.1 75 15-92 5-89 (270)
64 PRK13236 nitrogenase reductase 33.9 31 0.00067 31.4 2.4 76 14-92 8-93 (296)
65 PLN02645 phosphoglycolate phos 33.9 69 0.0015 29.4 4.7 72 14-85 32-108 (311)
66 PRK14722 flhF flagellar biosyn 33.6 4.3E+02 0.0093 25.2 10.8 90 12-108 137-240 (374)
67 PRK12857 fructose-1,6-bisphosp 33.5 51 0.0011 30.2 3.7 35 18-54 180-214 (284)
68 PRK09435 membrane ATPase/prote 33.3 89 0.0019 29.3 5.3 79 12-92 56-155 (332)
69 PRK12723 flagellar biosynthesi 33.2 3.7E+02 0.0081 25.7 9.6 134 13-158 175-321 (388)
70 PF14207 DpnD-PcfM: DpnD/PcfM- 33.0 46 0.001 22.0 2.4 19 242-260 18-36 (48)
71 COG0003 ArsA Predicted ATPase 32.8 38 0.00081 31.6 2.7 46 15-65 5-50 (322)
72 COG0647 NagD Predicted sugar p 32.7 2E+02 0.0044 26.1 7.4 133 13-157 11-152 (269)
73 CHL00072 chlL photochlorophyll 32.4 34 0.00073 31.2 2.3 34 16-51 4-37 (290)
74 PRK09432 metF 5,10-methylenete 31.8 1.1E+02 0.0023 28.2 5.5 46 102-160 75-120 (296)
75 KOG1220 Phosphoglucomutase/pho 31.6 1E+02 0.0022 31.1 5.5 116 21-144 108-233 (607)
76 cd02036 MinD Bacterial cell di 31.5 37 0.00079 27.6 2.2 31 18-50 6-36 (179)
77 PRK12928 lipoyl synthase; Prov 31.3 1.8E+02 0.0039 26.6 6.9 107 36-153 157-274 (290)
78 PF13344 Hydrolase_6: Haloacid 30.8 31 0.00067 26.2 1.5 64 46-109 9-79 (101)
79 PF07429 Glyco_transf_56: 4-al 30.1 1.7E+02 0.0037 27.7 6.6 94 36-149 261-356 (360)
80 TIGR01007 eps_fam capsular exo 29.9 94 0.002 26.2 4.6 33 13-47 18-51 (204)
81 TIGR01082 murC UDP-N-acetylmur 29.8 3.3E+02 0.0072 26.1 8.9 128 17-159 4-134 (448)
82 PLN02428 lipoic acid synthase 29.6 3E+02 0.0064 26.1 8.2 110 34-153 197-317 (349)
83 cd00550 ArsA_ATPase Oxyanion-t 29.4 35 0.00075 30.4 1.9 42 17-63 5-46 (254)
84 PRK09195 gatY tagatose-bisphos 29.1 64 0.0014 29.6 3.5 35 18-54 180-214 (284)
85 PF03721 UDPG_MGDP_dh_N: UDP-g 29.0 57 0.0012 27.6 3.0 25 15-46 3-27 (185)
86 TIGR01459 HAD-SF-IIA-hyp4 HAD- 28.8 1.2E+02 0.0027 26.3 5.3 57 13-70 11-67 (242)
87 PLN02540 methylenetetrahydrofo 28.7 1E+02 0.0022 31.2 5.0 70 78-160 21-96 (565)
88 PRK13235 nifH nitrogenase redu 28.4 42 0.00092 29.9 2.2 32 15-48 4-35 (274)
89 TIGR03029 EpsG chain length de 28.1 41 0.00089 29.9 2.1 30 17-48 109-138 (274)
90 COG3804 Uncharacterized conser 28.1 49 0.0011 30.6 2.5 122 17-159 7-131 (350)
91 TIGR01452 PGP_euk phosphoglyco 28.0 95 0.0021 27.8 4.5 70 14-83 6-80 (279)
92 PRK00162 glpE thiosulfate sulf 27.9 2.2E+02 0.0047 21.2 5.9 84 71-159 6-91 (108)
93 TIGR01281 DPOR_bchL light-inde 27.8 42 0.0009 29.7 2.1 31 16-48 4-34 (268)
94 PF01364 Peptidase_C25: Peptid 27.4 1.1E+02 0.0023 28.9 4.8 69 88-161 3-74 (378)
95 PRK07709 fructose-bisphosphate 27.4 74 0.0016 29.2 3.6 35 18-54 181-215 (285)
96 COG0240 GpsA Glycerol-3-phosph 27.2 4.4E+02 0.0096 24.7 8.7 22 30-51 12-33 (329)
97 TIGR03499 FlhF flagellar biosy 27.0 2.7E+02 0.0059 25.1 7.3 68 12-83 194-269 (282)
98 PRK08610 fructose-bisphosphate 26.6 78 0.0017 29.0 3.6 33 21-54 183-215 (286)
99 cd02035 ArsA ArsA ATPase funct 26.3 46 0.00099 28.7 2.0 34 17-52 4-37 (217)
100 TIGR00167 cbbA ketose-bisphosp 26.2 84 0.0018 28.8 3.8 33 21-54 185-218 (288)
101 COG0773 MurC UDP-N-acetylmuram 26.2 6.4E+02 0.014 24.8 10.8 130 15-159 10-142 (459)
102 TIGR01460 HAD-SF-IIA Haloacid 25.9 1.5E+02 0.0032 25.9 5.2 70 14-83 2-77 (236)
103 cd01423 MGS_CPS_I_III Methylgl 25.9 1.7E+02 0.0036 22.4 5.0 53 31-91 15-77 (116)
104 PF02142 MGS: MGS-like domain 25.5 61 0.0013 24.0 2.3 49 34-90 5-65 (95)
105 PF01116 F_bP_aldolase: Fructo 24.8 62 0.0013 29.6 2.6 36 18-54 180-217 (287)
106 PRK10853 putative reductase; P 24.4 52 0.0011 25.8 1.8 53 67-119 6-60 (118)
107 PRK05835 fructose-bisphosphate 24.1 91 0.002 29.0 3.6 31 24-55 187-217 (307)
108 TIGR01858 tag_bisphos_ald clas 24.0 92 0.002 28.5 3.6 33 21-54 180-212 (282)
109 PF07471 Phage_Nu1: Phage DNA 23.6 34 0.00074 28.7 0.7 39 28-66 12-50 (164)
110 PF06564 YhjQ: YhjQ protein; 23.5 61 0.0013 29.0 2.3 32 15-48 4-36 (243)
111 KOG1533 Predicted GTPase [Gene 23.4 3.7E+02 0.008 24.4 7.1 64 17-82 7-82 (290)
112 COG0771 MurD UDP-N-acetylmuram 23.4 61 0.0013 31.7 2.4 36 17-54 113-148 (448)
113 PF13627 LPAM_2: Prokaryotic l 23.3 64 0.0014 18.2 1.5 14 31-44 5-18 (24)
114 cd03008 TryX_like_RdCVF Trypar 23.3 37 0.0008 27.8 0.8 56 63-123 66-121 (146)
115 PRK07084 fructose-bisphosphate 22.8 1.8E+02 0.0039 27.2 5.3 28 27-55 202-230 (321)
116 COG3640 CooC CO dehydrogenase 22.7 58 0.0013 29.2 1.9 32 15-48 3-35 (255)
117 TIGR00510 lipA lipoate synthas 22.4 2.6E+02 0.0057 25.8 6.3 108 35-153 159-277 (302)
118 COG0493 GltD NADPH-dependent g 22.1 7.2E+02 0.016 24.3 9.6 130 13-157 124-292 (457)
119 TIGR03573 WbuX N-acetyl sugar 21.8 4.4E+02 0.0095 24.5 7.8 29 135-165 145-173 (343)
120 PF07131 DUF1382: Protein of u 21.8 84 0.0018 21.8 2.1 23 76-98 14-36 (61)
121 cd00947 TBP_aldolase_IIB Tagat 21.6 1.2E+02 0.0027 27.5 3.9 36 17-54 172-208 (276)
122 PF14852 Fis1_TPR_N: Fis1 N-te 21.3 71 0.0015 19.6 1.6 31 229-259 4-34 (35)
123 PRK12738 kbaY tagatose-bisphos 21.3 1.3E+02 0.0027 27.7 3.9 33 21-54 182-214 (286)
124 cd04724 Tryptophan_synthase_al 21.2 3.2E+02 0.0069 24.0 6.5 91 66-157 8-110 (242)
125 PRK11670 antiporter inner memb 21.2 63 0.0014 30.6 2.0 31 18-50 114-144 (369)
126 PF13207 AAA_17: AAA domain; P 21.1 67 0.0014 24.3 1.8 25 17-46 4-28 (121)
127 TIGR03569 NeuB_NnaB N-acetylne 20.8 3.3E+02 0.0071 25.5 6.7 71 31-105 98-184 (329)
128 PF15516 BpuSI_N: BpuSI N-term 20.8 86 0.0019 25.6 2.4 28 131-158 8-36 (159)
129 PRK01184 hypothetical protein; 20.6 3.2E+02 0.007 22.3 6.1 15 243-257 163-177 (184)
130 PHA02518 ParA-like protein; Pr 20.4 65 0.0014 27.0 1.8 30 20-51 9-38 (211)
131 smart00851 MGS MGS-like domain 20.4 3E+02 0.0066 19.9 5.3 48 34-89 5-59 (90)
132 PRK10037 cell division protein 20.3 59 0.0013 28.6 1.5 26 21-48 11-36 (250)
133 TIGR01969 minD_arch cell divis 20.3 74 0.0016 27.5 2.1 29 18-48 7-35 (251)
134 COG3473 Maleate cis-trans isom 20.2 5.8E+02 0.013 22.6 7.5 98 31-161 56-153 (238)
135 PF04227 Indigoidine_A: Indigo 20.2 2.3E+02 0.005 26.1 5.3 116 18-158 89-220 (293)
136 cd03070 PDI_b_ERp44 PDIb famil 20.2 3.4E+02 0.0074 20.4 5.5 49 126-175 16-69 (91)
137 COG1703 ArgK Putative periplas 20.0 1.2E+02 0.0026 28.3 3.4 45 12-58 51-95 (323)
No 1
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-81 Score=576.49 Aligned_cols=273 Identities=53% Similarity=0.831 Sum_probs=264.1
Q ss_pred CccccccccCCC-CcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCCCCCCHHHHHH
Q 023663 1 MIKYATKVEGLG-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (279)
Q Consensus 1 ~~~~~~~~~~~~-~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~s~~~~~~ 79 (279)
|++++.+++.+. ..+|+|||||||.+||||||++|+++|++|+||+|||||++|||+||+|+||+|||+++.+++++++
T Consensus 63 m~~~~~~~~~p~~~~vDi~GTGGDg~~T~NiSt~aA~v~A~~Gv~VaKHGnrs~sSksGsaDvleaLGv~l~~~~e~~~~ 142 (338)
T COG0547 63 MREHAPKLPVPAADPVDIVGTGGDGANTINISTAAAIVAAAAGVPVAKHGNRSVSSKSGSADVLEALGVNLELSPEQAAR 142 (338)
T ss_pred HHHhcccCCCCCCCCCCeecCCCCCCCcccchHHHHHHHHhCCCcEEeECCCCCCCCCcHHHHHHHcCCCCCCCHHHHHH
Confidence 567777776643 3399999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHcCCCeEEEEec
Q 023663 80 CVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS 159 (279)
Q Consensus 80 ~l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lG~~~alvv~G 159 (279)
+|++.||+|||+|.|||+|++++++|++||+||+||++|||+||+++++||+|||||+|.++++++++.+|.++++||||
T Consensus 143 ~l~~~g~~FlfAp~~hp~~k~v~~vR~~LG~RTifN~LGPL~NPa~~~~qliGV~~p~~~~~~A~~l~~LG~~ralvV~G 222 (338)
T COG0547 143 ALEETGIGFLFAPAYHPAMKHVAPVRKELGVRTIFNLLGPLLNPARAKLQLIGVYHPELVELLAEALRLLGVERALVVHG 222 (338)
T ss_pred HHHhcCeEEEEccccCHHHHHHHHHHHHcCCCchHHhhccccCCCCCCceEEEEeCHHHHHHHHHHHHHhCcceEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCcccccccCceEEEEEeCCeEEEEEeCCCCCCCCCCCCCCcCCCChHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 023663 160 -EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALLV 238 (279)
Q Consensus 160 -eG~dE~sp~~~t~v~~~~~g~~~~~~i~p~d~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~~~~~~~v~~naa~~L~~ 238 (279)
+|+||++|.+.|.|+++++|++++|+++|+|||+++.+++++++.++++|+++++++|+|+.++++|+|++|+|++||+
T Consensus 223 ~~GlDE~~~~~~t~v~~l~~g~i~~~~l~pe~~Gl~~~~~~~l~~~~~~ena~~~~~vL~G~~~~~~d~v~~Naa~~L~~ 302 (338)
T COG0547 223 LEGLDEVTPTGTTLVAELKDGEIREYTLTPEDFGLERAPLEDLPGGDPEENAEILRAVLAGEEGPARDAVALNAAAALYA 302 (338)
T ss_pred CCCcccccCCCCceEEEEcCCceEEEEeCHHhcCCCCCchhhcCCCCHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred cccCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Q 023663 239 SCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSK 273 (279)
Q Consensus 239 ~g~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~ 273 (279)
.|+++|++||+++|++.|+||+|+++|++++.+++
T Consensus 303 ~g~a~~l~eg~~~A~~~i~sG~a~~~l~~l~~~~~ 337 (338)
T COG0547 303 AGKAESLKEGIALALEAIDSGAALEKLEELVAFSK 337 (338)
T ss_pred cCccCCHHHHHHHHHHHHhCcHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999876
No 2
>PLN02641 anthranilate phosphoribosyltransferase
Probab=100.00 E-value=2.8e-79 Score=566.85 Aligned_cols=276 Identities=82% Similarity=1.206 Sum_probs=266.3
Q ss_pred CccccccccCCCCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCCCCCCHHHHHHH
Q 023663 1 MIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRC 80 (279)
Q Consensus 1 ~~~~~~~~~~~~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~s~~~~~~~ 80 (279)
|++++.+++..+..+|+|||||||++||||||++|+++|++|+||+|||||++|+++||+|+||+|||+++.+++++.++
T Consensus 62 ~~~~~~~~~~~~~~~D~~gtGGdg~~t~nist~aa~v~A~~G~~V~kHGnr~~ss~~GsaDvLeaLGi~~~~~~~~~~~~ 141 (343)
T PLN02641 62 MIKRARKVDGLVDAVDIVGTGGDGANTVNISTGSSILAAACGAKVAKQGNRSSSSACGSADVLEALGVAIDLGPEGVKRC 141 (343)
T ss_pred HHHhCCCCCCCCCCCceeCCCCCCCCccccHHHHHHHHHhCCCeEEEeCCCCCCCccCHHHHHHHcCCCCCCCHHHHHHH
Confidence 46777767644558999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHcCCCeEEEEecC
Q 023663 81 VDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSE 160 (279)
Q Consensus 81 l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lG~~~alvv~Ge 160 (279)
|+++||+|+++|.|||+|++++++|++||+||+||++|||+||+++++||+|||||+|.++|+++++.+|.++++||||+
T Consensus 142 l~~~g~~fl~a~~~hPa~~~~~~~R~~LG~RT~fN~lgpL~NPa~~~~~v~GV~~~~~~~~~a~al~~lG~~~alVv~G~ 221 (343)
T PLN02641 142 VEEVGIGFMMAPKYHPAMKIVAPVRKKLKVKTVFNILGPMLNPARVPHAVVGVYHESLVEKMAKALQRFGMKRALVVHSE 221 (343)
T ss_pred HHhcCcEEEechhhCHHHHHHHHHHHHhCCCcHHHHHHHhcCCCCCCceEEeeeCHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCceEEEEEeCCeEEEEEeCCCCCCCCCCCCCCcCCCChHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHcc
Q 023663 161 GLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALLVSC 240 (279)
Q Consensus 161 G~dE~sp~~~t~v~~~~~g~~~~~~i~p~d~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~~~~~~~v~~naa~~L~~~g 240 (279)
|+||++|.++|+++++.+|+++++.|+|+|||++.++++++.+.++++|+++++++|+|+.++++|+|++|+|++||++|
T Consensus 222 G~DEis~~g~t~v~~~~~g~i~~~~~~p~d~Gl~~~~~~~l~~~~~~~na~~~~~vL~G~~~~~~d~v~lNaa~~L~~~g 301 (343)
T PLN02641 222 GLDEMSPLGPGDVLEVTPEKIEEFSFDPLDFGIPRCTLEDLRGGDPDYNAKVLRDVLSGEKGAIADALILNAAAALLVSG 301 (343)
T ss_pred CCCccccCcceEEEEEeCCceEEEEeCHHHcCCCcCCHHhcCCCCHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999977899999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhc
Q 023663 241 KVNTLAEGVALAREIQLSGKALNTLDLWIEVSKHLL 276 (279)
Q Consensus 241 ~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~~ 276 (279)
+++|++||+++|+++|+||+|+++|++|++.++++.
T Consensus 302 ~~~sl~eg~~~A~~~i~sG~a~~~l~~~~~~~~~~~ 337 (343)
T PLN02641 302 LAKTLAEGVALARETQESGKAIKTLDSWIKISQELK 337 (343)
T ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999988764
No 3
>PRK07394 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-76 Score=548.56 Aligned_cols=266 Identities=23% Similarity=0.289 Sum_probs=252.9
Q ss_pred CccccccccCC--CCcceeeCCCCCCC-CCccchHHHHHHHHhCCCcEEeecCCCCCCccc--HHHHHHHcCCCCCC-CH
Q 023663 1 MIKYATKVEGL--GDAVDIVGTGGDGA-NTVNISTGASILAAACGAKVAKQGSRSSSSACG--SADVLEALGVVIDL-DP 74 (279)
Q Consensus 1 ~~~~~~~~~~~--~~~~D~~gtggdG~-~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~G--s~dvLe~LGi~~~~-s~ 74 (279)
|++++.+++.+ ..++|+|||||||+ +||||||++|+++|++|+||+|||||++||++| |+|+||+|||+++. ++
T Consensus 68 ~~~~~~~~~~~~~~~~~d~~GtggDG~~~t~NiSt~aA~v~A~~Gv~V~kHGnr~~ssk~GvtsaDvLe~LGv~~~~~~~ 147 (342)
T PRK07394 68 YDELGPKLQSPSNQRPPIVFGMPYDGRSRTAPIYPLTALILAAAGQPVVLHGGDRMPTKYGVPLVELWQGLGVDLTGLSL 147 (342)
T ss_pred HHHhCCCCCCCCCCCceeEEeCCCCCCCCCcccHHHHHHHHHHCCCeEEEECCCCCCCCCCchHHHHHHHCCCCCCCCCH
Confidence 46777777542 24789999999997 799999999999999999999999999999999 99999999999998 99
Q ss_pred HHHHHHHHhcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCC-CCCCceEEEeeChhhHHHHHHHHHHcCCCe
Q 023663 75 EGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP-ACVPFAVVGVYNENLVLKMANALQRFGLKR 153 (279)
Q Consensus 75 ~~~~~~l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP-~~~~~~v~Gv~h~~~~~~~~~~~~~lG~~~ 153 (279)
+++.++|+++||+|+++|.|||+|++++++|++||+||+||++|||+|| +++++||+|||||+|.++|+++++.+|.++
T Consensus 148 ~~~~~~l~~~g~~Fl~ap~~hP~m~~~~~vR~~Lg~RT~fN~lgpL~NP~a~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~ 227 (342)
T PRK07394 148 EQVQEGFEQTGLAFIYQPDHFPLAESLIPYRDEIGKRPPLATLELIWTPHQGDHHLVSGFVHPPTEARAWEALELRGETN 227 (342)
T ss_pred HHHHHHHHHcCceeeechhhCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCCceEEEeeCHHHHHHHHHHHHHcCCCe
Confidence 9999999999999999999999999999999999999999999999999 689999999999999999999999999999
Q ss_pred EEEEec-CCcccccccCceEEEEEeCCeEEEEEeCCCCCCCCCCCCCCcCCCChHHHHHHHHHHhCCCCchHHHHHHHHH
Q 023663 154 ALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNA 232 (279)
Q Consensus 154 alvv~G-eG~dE~sp~~~t~v~~~~~g~~~~~~i~p~d~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~~~~~~~v~~na 232 (279)
++|||| ||+||++++++|.++++++|++.++.++|+|||++++ ++++.++++|+++++++|+|+.++++|+|++||
T Consensus 228 ~~vv~G~~G~dE~s~~~~t~v~~~~~g~i~~~~i~p~d~G~~~~---~l~~~~~~~na~~~~~vl~G~~~~~~~~v~lNa 304 (342)
T PRK07394 228 FTTVKGLEGSCDLPISRTAIIGRVQNGHFERLILHPRDYGCGGK---DVPWESTEEWLEQAQAALNGEPGPLTQALIWNG 304 (342)
T ss_pred EEEEEcCCCceeccCCCCeEEEEEcCCeEEEEEECHHHcCCCcc---cCCCCCHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 999999 9999999999999999999999999999999999864 467889999999999999999878889999999
Q ss_pred HHHHHHcccCCCHHHHHHHHHHHHHccHHHHHHHHHH
Q 023663 233 AAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWI 269 (279)
Q Consensus 233 a~~L~~~g~~~~~~eg~~~A~~~l~sG~a~~~l~~~~ 269 (279)
|++||++|+++|++||+++|+++|+||+|+++|++|+
T Consensus 305 a~~L~~~g~~~s~~eg~~~A~~~i~sG~a~~~l~~~~ 341 (342)
T PRK07394 305 GFYLWRAGISSSLEEGIEKAEELLNSGKALQKLQQLI 341 (342)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence 9999999999999999999999999999999999986
No 4
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=100.00 E-value=7.3e-74 Score=530.69 Aligned_cols=270 Identities=54% Similarity=0.850 Sum_probs=258.7
Q ss_pred CccccccccC--CCCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCCCCCCHHHHH
Q 023663 1 MIKYATKVEG--LGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVR 78 (279)
Q Consensus 1 ~~~~~~~~~~--~~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~s~~~~~ 78 (279)
|++++.+++. ...++|+|||||||++||||||++|+++|++|+||+|||+|++++++|++|+||+|||+++.+++++.
T Consensus 56 ~~~~~~~~~~~~~~~~iD~~gtggdg~~t~nist~~a~vlA~~G~~V~kHG~r~~~s~~Gs~d~le~LGi~~~~s~~~~~ 135 (330)
T TIGR01245 56 MREHAVKVPGRPVEDLVDIVGTGGDGANTINISTASAFVAAAAGVKVAKHGNRSVSSKSGSADVLEALGVNLDLGPEKVA 135 (330)
T ss_pred HHHhCCCCCCccCCCcccccCCCCCCCCccccHHHHHHHHHhCCCEEEEeCCCCCCCCccHHHHHHHcCCCCCCCHHHHH
Confidence 3566665543 24589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHcCCCeEEEEe
Q 023663 79 RCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (279)
Q Consensus 79 ~~l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lG~~~alvv~ 158 (279)
++|+++||+|+++|.|||+|++++++|++||+||+||+++||+||++++++|+|||||+|.++|+++++.+|.++++||+
T Consensus 136 ~~l~~~g~~f~~~~~~~P~~~~l~~lR~~lg~rT~~N~lgpL~NP~~~~~~v~Gv~~~~~~~~~a~~~~~lg~~~~~vv~ 215 (330)
T TIGR01245 136 RSLEETGIGFLFAPLYHPAMKHVAPVRRELGVRTVFNLLGPLTNPARPKYQVIGVYDPDLVEVMAEALKNLGVKRALVVH 215 (330)
T ss_pred HHHHHhCcEEeechhhCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCCEEEcccCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCcccccccCceEEEEEeCCeEEEEEeCCCCCCCCCCCCCCcCCCChHHHHHHHHHHhCCCC-chHHHHHHHHHHHHH
Q 023663 159 S-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIADALILNAAAAL 236 (279)
Q Consensus 159 G-eG~dE~sp~~~t~v~~~~~g~~~~~~i~p~d~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~-~~~~~~v~~naa~~L 236 (279)
| ||+||++|+++|+|+++++|++.++.|+|+|||++..++++++++++++++++++++|+|+. +++.++|++|+|++|
T Consensus 216 G~~G~dE~s~~~~t~v~~~~~g~~~~~~i~p~~~g~~~~~~~~~~~~~~~~~a~~~~~~l~G~~~~~~~~~v~lnaA~~L 295 (330)
T TIGR01245 216 GDDGLDEISLTGPTTVAELKDGEIREYTLDPEDFGLPRAPLEELAGGSPEENAEILRDILRGKGSGAKRDIVALNAAAAL 295 (330)
T ss_pred CCCCceeecCCCcEEEEEEECCEEEEEeCCHHHcCCCcCCHhhcCCCCHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHH
Confidence 9 99999999999999999999999999999999999988888988999999999999999995 788999999999999
Q ss_pred HHcccCCCHHHHHHHHHHHHHccHHHHHHHHHHH
Q 023663 237 LVSCKVNTLAEGVALAREIQLSGKALNTLDLWIE 270 (279)
Q Consensus 237 ~~~g~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~ 270 (279)
|++|+++|++||+++|+++|+||+|+++|++|++
T Consensus 296 ~~~g~~~s~~e~~~~a~~~i~sG~a~~~l~~~~~ 329 (330)
T TIGR01245 296 YVAGRASDLKEGVELALEAIDSGAAAEKLEELVA 329 (330)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHh
Confidence 9999999999999999999999999999999986
No 5
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=5.3e-73 Score=526.87 Aligned_cols=274 Identities=54% Similarity=0.844 Sum_probs=261.3
Q ss_pred CccccccccCCCCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCCCCCCHHHHHHH
Q 023663 1 MIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRC 80 (279)
Q Consensus 1 ~~~~~~~~~~~~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~s~~~~~~~ 80 (279)
|++++.+++..+..+|+|||||||++||||||++|+++|++|+||+|||++++++++|++|+||+|||+++.+++++.++
T Consensus 62 ~~~~~~~~~~~~~~iDi~gtggdg~~t~nis~~~a~vlA~~G~~V~kHG~~~~~s~~GsadvLe~lGi~~~~~~~~~~~~ 141 (339)
T PRK00188 62 MREHAVPVPDPDDAVDIVGTGGDGANTFNISTAAAFVAAAAGVKVAKHGNRSVSSKSGSADVLEALGVNLDLSPEQVARC 141 (339)
T ss_pred HHHhCCcCCCCCCCCcccCCCCCCCCccchHHHHHHHHHhCCCEEEEECCCCCCCCcCHHHHHHHcCCCCCCCHHHHHHH
Confidence 35666656543458999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHcCCCeEEEEec-
Q 023663 81 VDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS- 159 (279)
Q Consensus 81 l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lG~~~alvv~G- 159 (279)
|+++||+|+++|.|||+|++++++|++||+||+|||++||+||++++++|+|||||+|.++|+++++.+|+++++||||
T Consensus 142 l~~~g~~fl~a~~~~P~l~~l~~lR~~Lg~Rt~fN~l~~L~NP~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~~~~vv~G~ 221 (339)
T PRK00188 142 LEEVGIGFLFAPLYHPAMKHVAPVRKELGIRTIFNLLGPLTNPARPKRQLIGVYSPDLLEPMAEVLKRLGSKRALVVHGS 221 (339)
T ss_pred HHHcCcEEeeCcccCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCCEEEeecCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccCceEEEEEeCCeEEEEEeCCCCCCCCCCCCCCcCCCChHHHHHHHHHHhCCC-CchHHHHHHHHHHHHHHH
Q 023663 160 EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE-RGAIADALILNAAAALLV 238 (279)
Q Consensus 160 eG~dE~sp~~~t~v~~~~~g~~~~~~i~p~d~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~-~~~~~~~v~~naa~~L~~ 238 (279)
||+||++|+++|+++++++|++.++.|+|+|||++..+.+++.+.++++|+++++++|+|+ .+++.+.|++|+|++||+
T Consensus 222 ~G~dE~~~~~~t~v~~~~~g~~~~~~i~p~~~Gl~~~~~~~~~~~~~~~~a~~~~~vl~G~~~~~~~~~v~lnaA~~L~~ 301 (339)
T PRK00188 222 DGLDEISLTGPTTVAELKDGEIREYTLTPEDFGLPRAPLEDLRGGDPEENAAILRAVLQGKGPGAARDAVLLNAAAALYV 301 (339)
T ss_pred CCceeecCCCCEEEEEEcCCEEEEEEECHHHcCCCcCCHHhcCCCCHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHH
Confidence 9999999999999999999998899999999999988777788889999999999999996 578999999999999999
Q ss_pred cccCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhhh
Q 023663 239 SCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKH 274 (279)
Q Consensus 239 ~g~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~ 274 (279)
+|+++|++||+++|+++|+||+++++|++|++.+++
T Consensus 302 ~g~~~s~~e~~~~A~~~i~sG~a~~~l~~~~~~~~~ 337 (339)
T PRK00188 302 AGKADDLKEGVELAREAIDSGAALAKLEELVAFSQE 337 (339)
T ss_pred cCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999998775
No 6
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=3e-73 Score=556.21 Aligned_cols=275 Identities=41% Similarity=0.680 Sum_probs=264.6
Q ss_pred CccccccccCC-CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCCCCCCHHHHHH
Q 023663 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (279)
Q Consensus 1 ~~~~~~~~~~~-~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~s~~~~~~ 79 (279)
|++++.+++.+ ...+|+|||||||++||||||++|+++|++|+||+|||||++|+++||+|+||+|||+++.+++++.+
T Consensus 254 ~~~~~~~~~~~~~~~~D~~gtggdg~~t~nist~~a~v~A~~G~~V~kHG~r~~ss~~Gsadvle~lGv~~~~~~~~~~~ 333 (534)
T PRK14607 254 MREKSRHIPAPSPRTVDTCGTGGDGFGTFNISTTSAFVVAAAGVPVAKHGNRAVSSKSGSADVLEALGVKLEMTPEEAAS 333 (534)
T ss_pred HHHhCCcCCCCCCCceEEccCCCCCCCccccHHHHHHHHHhCCCcEEEECCCCCCCCccHHHHHHHcCCCCCCCHHHHHH
Confidence 56777777543 45899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHcCCCeEEEEec
Q 023663 80 CVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS 159 (279)
Q Consensus 80 ~l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lG~~~alvv~G 159 (279)
+|++.||+|+++|.|||+|++++++|++||+||+||++|||+||++++++|+|||||+|.++|+++++.+|.++++||||
T Consensus 334 ~l~~~g~~fl~ap~~~p~l~~~~~~R~~Lg~rTifN~lgpL~NP~~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~~~vv~G 413 (534)
T PRK14607 334 VLRETGFSFLFAPLFHPAMKHAAPARRELGIRTAFNLLGPLTNPARVKYQIVGVFDPSYAEPLAQALQRLGTERAMVVSG 413 (534)
T ss_pred HHHHhCcEEeeccccCHHHHHHHHHHHHhCCCcHHHhHHhccCCCCCCcEEEeeCCHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCcccccccCceEEEEEeCCeEEEEEeCCCCCCCCCCCCCCcCCCChHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHH
Q 023663 160 -EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIADALILNAAAALL 237 (279)
Q Consensus 160 -eG~dE~sp~~~t~v~~~~~g~~~~~~i~p~d~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~-~~~~~~v~~naa~~L~ 237 (279)
||+||++|.++|+++++++|++.++.|+|+|||++..+.+++.+.++++|+++++++|+|+. ++++|+|++|||++||
T Consensus 414 ~~G~dE~s~~~~t~v~~~~~g~i~~~~i~p~~~Gl~~~~~~~~~~~~~~~na~~~~~vl~G~~~~~~~~~v~lnaA~~L~ 493 (534)
T PRK14607 414 IDGYDEISTCGPTQILELEDGEIVTYTFDPEELGLKRVDPEELKGGDPQENYRLAEDVLKGEPRRPQRDAVALNAGAALY 493 (534)
T ss_pred CCCCccccCCCceEEEEEcCCEEEEEEEcHHHCCCCCCCHHHcCCCCHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988888989999999999999999995 7899999999999999
Q ss_pred HcccCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhhhh
Q 023663 238 VSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKHL 275 (279)
Q Consensus 238 ~~g~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~ 275 (279)
++|+++|++||+++|+++|+||+|+++|++|++.++++
T Consensus 494 ~~g~~~s~~eg~~~a~~~i~sG~a~~~l~~~~~~~~~~ 531 (534)
T PRK14607 494 LVGEADSIKEGVGKALDLIDDGRAYKKLEEVMDLSKTL 531 (534)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999998765
No 7
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=4.4e-73 Score=552.63 Aligned_cols=270 Identities=38% Similarity=0.655 Sum_probs=258.1
Q ss_pred CccccccccCC-CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCCCCCCHHHHHH
Q 023663 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (279)
Q Consensus 1 ~~~~~~~~~~~-~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~s~~~~~~ 79 (279)
|++++.+++.. ..++|+|||||||++||||||++|+++|++|+||+|||||++|+++|++|+||+|||+++.+++++.+
T Consensus 259 ~~~~~~~~~~~~~~~iD~~gtGgdg~~t~nist~aa~v~A~~Gv~V~kHG~r~~ss~~GsadvlealGi~~~~~~~~~~~ 338 (531)
T PRK09522 259 LLENAAPFPRPDYLFADIVGTGGDGSNSINISTASAFVAAACGLKVAKHGNRSVSSKSGSSDLLAAFGINLDMNADKSRQ 338 (531)
T ss_pred HHHhCCCCCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhCCCcEEEeCCCCCCCCccHHHHHHHcCCCCCCCHHHHHH
Confidence 56777776543 45799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHcCCCeEEEEec
Q 023663 80 CVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS 159 (279)
Q Consensus 80 ~l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lG~~~alvv~G 159 (279)
+|++.||+|+++|.|||+|++++++|++||+||+||++|||+||+++++||+|||||+|.++|+++++.+|.++++||||
T Consensus 339 ~l~~~g~~fl~ap~~hpam~~~~~~R~~Lg~rT~fN~lgpL~NPa~~~~~v~Gv~~~~~~~~~a~~l~~lG~~~~~vv~G 418 (531)
T PRK09522 339 ALDELGVCFLFAPKYHTGFRHAMPVRQQLKTRTLFNVLGPLINPAHPPLALIGVYSPELVLPIAETLRVLGYQRAAVVHS 418 (531)
T ss_pred HHHHhCcEEEEhhHhCHHHHHHHHHHHHhCCCcHHHHHHHhcCCCCCCcEEEEeeCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccCceEEEEEeCCeEEEEEeCCCCCCCCCCCCCCcCCCChHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHH
Q 023663 160 EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIADALILNAAAALLV 238 (279)
Q Consensus 160 eG~dE~sp~~~t~v~~~~~g~~~~~~i~p~d~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~-~~~~~~v~~naa~~L~~ 238 (279)
+|+||+||+++|+|+++++|++++++|+|+|||++.++++++.++++++|+++++++|+|+. ....++|++|||++||+
T Consensus 419 ~G~DEis~~~~t~v~~~~~g~i~~~~~~P~d~Gl~~~~~~~i~g~~~~~na~~~~~vl~G~~~~~~~~~v~~naa~~l~~ 498 (531)
T PRK09522 419 GGMDEVSLHAPTIVAELHDGEIKSYQLTAEDFGLTPYHQEQLAGGTPEENRDILTRLLQGKGDAAHEAAVAANVAMLMRL 498 (531)
T ss_pred CCccccCCCCceEEEEEcCCeEEEEEECHHHcCCCCCCHHHhcCCCHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999995 34568999999999999
Q ss_pred cccCCCHHHHHHHHHHHHHccHHHHHHHHHHHH
Q 023663 239 SCKVNTLAEGVALAREIQLSGKALNTLDLWIEV 271 (279)
Q Consensus 239 ~g~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~ 271 (279)
.|. +|++||+++|+++|+||+|+++|++|++.
T Consensus 499 ~g~-~~l~~g~~~a~~~i~sG~a~~~l~~l~~~ 530 (531)
T PRK09522 499 HGH-EDLQANAQTVLEVLRSGSAYDRVTALAAR 530 (531)
T ss_pred cCC-CCHHHHHHHHHHHHhCCHHHHHHHHHHhc
Confidence 996 89999999999999999999999999863
No 8
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1V8G_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 3H5Q_A 1KHD_A 1KGZ_B 1AZY_A 1OTP_A ....
Probab=100.00 E-value=5.2e-74 Score=514.19 Aligned_cols=250 Identities=52% Similarity=0.817 Sum_probs=237.5
Q ss_pred CcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHHhcCeEEEeCC
Q 023663 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMST 92 (279)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~s~~~~~~~l~~~g~~fl~~~ 92 (279)
+++|+|||||||.+||||||++|+++|++|+||+|||+|++++++|++|+||+|||++++++++++++|+++||+|+++|
T Consensus 2 ~~~D~~gTGGd~~~t~niSt~~a~vlAa~G~~V~kHG~r~~~~~~Gs~dvLe~LGv~~~~~~~~~~~~l~~~g~~fl~~~ 81 (252)
T PF00591_consen 2 PVVDICGTGGDGDKTFNISTAAAIVLAAAGVPVAKHGNRGVTSKSGSADVLEALGVPIDLSPEEAQAQLEETGIAFLFAP 81 (252)
T ss_dssp TEEEEEESSCSSSTBHHHHHHHHHHHHHTTSEEEEEEESGCTTSSSHHHHHHHSTB-TT--HHHHHHHHHHHSEEEEEHH
T ss_pred CceEEecCCCCCCCceehHHHHHHHHHccCCcEecccCCCccccccHHHHHHhcCCCcCCCHHHHHHHhhccCeEEecch
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHcCCCeEEEEecCCcccccccCceE
Q 023663 93 KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGL 172 (279)
Q Consensus 93 ~~~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lG~~~alvv~GeG~dE~sp~~~t~ 172 (279)
.|||+|++++++|++||+||+||+++||+||++++++|+|||||+|.+.|+++++.+|+++++||+|||+||+++.++|+
T Consensus 82 ~~~p~~~~l~~~R~~lg~rT~~N~l~pL~nP~~~~~~v~Gv~~~~~~~~~~~~~~~lg~~~~~vv~G~G~dE~~~~~~t~ 161 (252)
T PF00591_consen 82 NFHPALKRLAPVRRELGIRTVFNTLGPLLNPANAKHQVIGVFHPEYAELMAEALRDLGYGRALVVKGEGSDEISPLGPTR 161 (252)
T ss_dssp HHSGGHHHHHHHHHHHTS--SHHHHGHHHHTT--SEEEEEHSCHHHHHHHHHHHCCETESEEEEEEETTBSSHHHSSHEE
T ss_pred hcCcchHHHHHHHHHcCCCCHHHhhhhhcCCcCCCcEEEEEeCHHHHHHHHHHHHhCCCceEEEEecCCcchhhhccCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCeEEEEEeCCCCCCCCCCCCCCcCCCChHHHHHHHHHHhCCCCchH-HHHHHHHHHHHHHHcccCCCHHHHHHH
Q 023663 173 ILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAI-ADALILNAAAALLVSCKVNTLAEGVAL 251 (279)
Q Consensus 173 v~~~~~g~~~~~~i~p~d~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~~~~-~~~v~~naa~~L~~~g~~~~~~eg~~~ 251 (279)
++++++|++.++.++|+|||++..+.+++...++++++++++++|+|+.+++ +|+|++|||++||++|+++|++||+++
T Consensus 162 v~~~~~g~~~~~~l~p~d~gl~~~~~~~l~~~~~~e~~~~~~~~L~G~~~~~~~d~v~~nAa~~L~~~g~~~s~~eg~~~ 241 (252)
T PF00591_consen 162 VYELKNGEITEYELDPEDFGLKRAPLEELEGGDPEENARILRAVLAGEEDPAHRDAVLLNAAAALYVAGKASSLEEGVEK 241 (252)
T ss_dssp EEEHHTTEEEEEEEEEGCCTSSSEEGGGGBHSSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSSSSHHHHHHH
T ss_pred EEeecCCceeEEecCHhhcCCCCCChHHhcCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999999999999999888888888899999999999999998765 899999999999999999999999999
Q ss_pred HHHHHHccHHH
Q 023663 252 AREIQLSGKAL 262 (279)
Q Consensus 252 A~~~l~sG~a~ 262 (279)
|+++|+||+||
T Consensus 242 a~e~i~sG~Al 252 (252)
T PF00591_consen 242 AREAIDSGKAL 252 (252)
T ss_dssp HHHHHHHTHHH
T ss_pred HHHHHHcCCCC
Confidence 99999999996
No 9
>PRK08136 glycosyl transferase family protein; Provisional
Probab=100.00 E-value=7.4e-68 Score=485.57 Aligned_cols=244 Identities=19% Similarity=0.229 Sum_probs=228.8
Q ss_pred CccccccccCC--C-CcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCCCCCCHHHH
Q 023663 1 MIKYATKVEGL--G-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGV 77 (279)
Q Consensus 1 ~~~~~~~~~~~--~-~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~s~~~~ 77 (279)
|++++.+++.+ . ..+|+||||||++ ||||||++|+++|++|+||+|||||++|+|+||+|+||+|||+++.+++++
T Consensus 66 ~~~~~~~~~~~~~~~~~iD~~gtgGd~~-t~nist~aA~vlA~~G~~V~kHGnr~vssk~gsadvleaLGi~~~~~~~~~ 144 (317)
T PRK08136 66 MQAHTIPLTPPAGRPMPVVIPSYNGARK-QANLTPLLALLLAREGVPVLVHGVSEDPTRVTSAEIFEALGIPPTLHADQA 144 (317)
T ss_pred HHHhCCcCCCCCCCCceEEeCCCCCCCC-CcChHHHHHHHHHHCCCeEEEECCCCCCCcccHHHHHHHcCCCCCCCHHHH
Confidence 46777777442 2 3799999999965 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCC--CCCCceEEEeeChhhHHHHHHHHHHcCCCeEE
Q 023663 78 RRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP--ACVPFAVVGVYNENLVLKMANALQRFGLKRAL 155 (279)
Q Consensus 78 ~~~l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP--~~~~~~v~Gv~h~~~~~~~~~~~~~lG~~~al 155 (279)
.++|++.||+|+++|.|||+|++++++|++||+||+||++|||+|| +++++||+|||||+|.++|+++++.+|. +++
T Consensus 145 ~~~l~~~g~~fl~ap~~hPa~~~~~~vR~~LG~RT~fN~lgpL~NP~~a~~~~~v~Gv~~~~~~~~~a~~l~~lg~-~al 223 (317)
T PRK08136 145 QAKLAEGQPAFIPVGVLCPPLARLLALRWRMGVRNSAHTLAKLATPFAEGAALRLSSYTHPEYRDRLAEFFSDIGA-RAL 223 (317)
T ss_pred HHHHHhcCeEEEEhHHhCHHHHHHHHHHHHhCCCCHHHHHHHhcCccccCCCeEEEeeeChHHHHHHHHHHHHcCC-CEE
Confidence 9999999999999999999999999999999999999999999999 6899999999999999999999999998 999
Q ss_pred EEec-CCcccccccCceEEEEEeCCeEEEEEeCCCCCCCCCCCCCCc-CCCChHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 023663 156 VVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESL-QGGGPAYNAEVLRRVLSGERGAIADALILNAA 233 (279)
Q Consensus 156 vv~G-eG~dE~sp~~~t~v~~~~~g~~~~~~i~p~d~gl~~~~~~~~-~~~~~~~~a~~~~~vL~G~~~~~~~~v~~naa 233 (279)
|||| ||+||++|+++|+|+++++|+++ +.++|+++|++..+ ++ .++|+++|+++++++|+|+ .+.+|+|++|||
T Consensus 224 vv~G~~G~dE~s~~~~t~v~~~~~g~~~-~~~~p~~~g~~~~~--~~~~~~~~~~na~~~~~vL~G~-~~~~d~v~lNaa 299 (317)
T PRK08136 224 LMRGTEGEVYANPRRCPQIDWIHDGGCR-VLVERQSGSADEPP--ELPAAKDAATTAAWIERVLAGE-VPVPESIARQVA 299 (317)
T ss_pred EEEcCCCceeecCCCCceEEEEeCCEEE-EEECHHHcCCccCc--hhccCCCHHHHHHHHHHHHCCC-CCcchHHHHHHH
Confidence 9999 99999999999999999999988 99999999998865 55 6889999999999999996 356699999999
Q ss_pred HHHHHcccCCCHHHHHH
Q 023663 234 AALLVSCKVNTLAEGVA 250 (279)
Q Consensus 234 ~~L~~~g~~~~~~eg~~ 250 (279)
++||++|+++|++||+.
T Consensus 300 ~~l~~~g~~~~~~~g~~ 316 (317)
T PRK08136 300 CCLVAAGEAATIEDGLA 316 (317)
T ss_pred HHHHHcCccCCHHHhhc
Confidence 99999999999999975
No 10
>PRK09071 hypothetical protein; Validated
Probab=100.00 E-value=3.3e-65 Score=469.86 Aligned_cols=247 Identities=19% Similarity=0.190 Sum_probs=227.9
Q ss_pred CccccccccCCCCccee-eCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCccc-HHHHHHHcCCCCCCCHHHHH
Q 023663 1 MIKYATKVEGLGDAVDI-VGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACG-SADVLEALGVVIDLDPEGVR 78 (279)
Q Consensus 1 ~~~~~~~~~~~~~~~D~-~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~G-s~dvLe~LGi~~~~s~~~~~ 78 (279)
|++++.+++. +..+|+ ||||+|+..++ ++++|+++|++|+||+|||||++|+++| |+|+||+|||+++.+++++.
T Consensus 67 ~r~~~~~~~~-~~~iD~~~gtG~d~~~~~--~~~~a~vlA~~G~~V~kHGnr~~ssk~g~saDvLeaLGv~~~~~~~~~~ 143 (323)
T PRK09071 67 IRERLQAPPL-AVDLDWPSYAGKRRHLPW--YLLAAKLLAQNGYRVLLHGGGGHTAGRLYTEQLLEALGIPIARSWQEAE 143 (323)
T ss_pred HHHhcccCCC-CCceecCCcCCCCCCccc--HHHHHHHHHHCCCeEEEECCCCCCCCcccHHHHHHHCCCCCCCCHHHHH
Confidence 5677777653 234998 99999966665 5799999999999999999999999986 99999999999999999999
Q ss_pred HHHHhcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHcCCCeEEEEe
Q 023663 79 RCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (279)
Q Consensus 79 ~~l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lG~~~alvv~ 158 (279)
++|++.||+|+++|.|||+|++++++|++||+||+||++|||+||+++++||+|||||+|.++|+++++.+|.++++|||
T Consensus 144 ~~l~~~g~~fl~ap~~hPa~~~~~~~R~~lg~RT~fN~lgpL~NPa~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~alvv~ 223 (323)
T PRK09071 144 QALEEHNIAYLPLEDFAPQLQRMIDLRNTLGLRSPINTLARLLNPLNAKASLQGIFHPGYQQLHREAARLLGDQNALVFK 223 (323)
T ss_pred HHHHhcCeEEeehHHhChHHHHHHHHHHHhCCCCHHHHHHHHcCcCCCCceEEeeEChhHHHHHHHHHHHcCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCcccccccCceEEEEEeCCeEEEEEeCCCCCCCCCCCCCCcCCCChHHHHHHHHHHhCCCC-ch-HHHHHHHHHHHH
Q 023663 159 S-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GA-IADALILNAAAA 235 (279)
Q Consensus 159 G-eG~dE~sp~~~t~v~~~~~g~~~~~~i~p~d~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~-~~-~~~~v~~naa~~ 235 (279)
| +|+||++|+++|+|+++++|++.++.++ +||++..+ .++++|+++++++|+|+. ++ ..|+|++|||++
T Consensus 224 G~~G~dE~s~~~~t~v~~~~~g~i~~~~~~--~~g~~~~~------~~~~~na~~~~~vl~G~~~~~~~~d~v~~Naa~a 295 (323)
T PRK09071 224 GEGGESERNPDVSTTLYGSRNGEAWDEEWP--ALSEERHV------KPEELDPEQLLAVWRGEEEDEYGENAVIATMALA 295 (323)
T ss_pred CCCCceeecCCCceEEEEEcCCeEEEEEec--ccccccCC------CCcccCHHHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence 9 9999999999999999999999999985 48877643 278899999999999984 44 458999999999
Q ss_pred HHHcccCCCHHHHHHHHHHHHHcc
Q 023663 236 LLVSCKVNTLAEGVALAREIQLSG 259 (279)
Q Consensus 236 L~~~g~~~~~~eg~~~A~~~l~sG 259 (279)
|| .|+++|++||+++|+++|+++
T Consensus 296 L~-~g~~~sl~eg~~~A~~~w~~r 318 (323)
T PRK09071 296 LW-RGLNQSREEAFEKAAQLWATR 318 (323)
T ss_pred HH-cCCCCCHHHHHHHHHHHHHHh
Confidence 99 999999999999999999876
No 11
>KOG1438 consensus Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.7e-66 Score=450.90 Aligned_cols=262 Identities=63% Similarity=1.001 Sum_probs=250.6
Q ss_pred CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCCC-CCCHHHHHHHHHhcCeEEEe
Q 023663 12 GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVI-DLDPEGVRRCVDEAGIGFMM 90 (279)
Q Consensus 12 ~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~-~~s~~~~~~~l~~~g~~fl~ 90 (279)
++++||+||||||.||||+||.+|+++|.||.+|+||||++.+|.+|++|+|++||+++ +.+++.+.+++++.+|.|++
T Consensus 102 ~~~vDIVGTGGDG~NTfNvST~saIvAag~GlkvcKhGnkaStSasGsaDll~~lGCd~l~v~p~~i~~~~e~~~f~Fl~ 181 (373)
T KOG1438|consen 102 EDAVDIVGTGGDGANTFNVSTGSAIVAAGCGLKVCKHGNKASTSASGSADLLEALGCDVLDVGPEGIKRCVEEGGFGFLM 181 (373)
T ss_pred CceeEEeccCCCCcceeeecchHHHHHhcccchhhhcCCccccccCccHHHHHhcCceeeccCCcccccccccCceeEEe
Confidence 56899999999999999999999999999999999999999999999999999999765 48999999999999999999
Q ss_pred CCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHcCCCeEEEEec-CCcccccccC
Q 023663 91 STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLG 169 (279)
Q Consensus 91 ~~~~~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lG~~~alvv~G-eG~dE~sp~~ 169 (279)
+|-|||+|+.+.++||+||++|+||++|||+||++..++++||||+++.+.|+++++++|..+.++|+| +|+||+||.+
T Consensus 182 aPm~Hp~mk~V~piRK~LgipTvFNilGPlLnP~~v~~rivGVy~k~L~~~~AKal~~~g~gs~~~V~g~~GLDE~SP~G 261 (373)
T KOG1438|consen 182 APMYHPAMKIVGPIRKKLGIPTVFNILGPLLNPARVSYRIVGVYHKDLVVKMAKALQRFGMGSRALVVGSCGLDEMSPLG 261 (373)
T ss_pred chhhcccccchhHHHHhcCCccHHHhcccccCcchhhhheeeeeHHHHHHHHHHHHHHhCCCceEEEEeccCccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999987888888 9999999999
Q ss_pred ceEEEEEeCCe--EEEEEeCCCCCCCCCCCCCCcCCCChHHHHHHHHHHhCCCC---chHHHHHHHHHHHHHHHcccCCC
Q 023663 170 PGLILDVTQEK--IERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER---GAIADALILNAAAALLVSCKVNT 244 (279)
Q Consensus 170 ~t~v~~~~~g~--~~~~~i~p~d~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~---~~~~~~v~~naa~~L~~~g~~~~ 244 (279)
+|.+|.+++++ +++|.++|.+||++.++++++.++.|.+|+-.++++|+|+- +|+.|.+++|+|++|.+++.+++
T Consensus 262 ~t~vw~v~~se~k~e~f~~~P~~Fgl~~h~Ls~~asggP~~NAilleevLSg~~hagdPI~Dy~lmNtAall~vs~~~q~ 341 (373)
T KOG1438|consen 262 GTLVWDVTPSEEKIEEFSFDPLDFGLPRHTLSDLASGGPDYNAILLEEVLSGESHAGDPIADYLLMNTAALLLVSNRVQT 341 (373)
T ss_pred CceEEEecCCceeeeeeecCHhhcCCCcCchhhhccCCCCccHHHHHHHhcCcccCCChHHHHHHHHHHHHHHHhhhhhH
Confidence 99999999865 67888999999999999999999999999999999999983 68999999999999999999999
Q ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhh
Q 023663 245 LAEGVALAREIQLSGKALNTLDLWIEVSK 273 (279)
Q Consensus 245 ~~eg~~~A~~~l~sG~a~~~l~~~~~~~~ 273 (279)
++||+..|++.|.||+|++.|..|+..++
T Consensus 342 l~EGv~~A~esisSG~Alr~L~~fi~~~s 370 (373)
T KOG1438|consen 342 LAEGVTVARESISSGKALRTLDSFINISS 370 (373)
T ss_pred HHhhhHHHHHhhcchHHHHHHHHHHhhhh
Confidence 99999999999999999999999996654
No 12
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=100.00 E-value=1.8e-47 Score=361.15 Aligned_cols=235 Identities=23% Similarity=0.299 Sum_probs=213.3
Q ss_pred CccccccccCC---CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHc-CCCCCCCHHH
Q 023663 1 MIKYATKVEGL---GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDPEG 76 (279)
Q Consensus 1 ~~~~~~~~~~~---~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~L-Gi~~~~s~~~ 76 (279)
|++++.+++.+ ..++|+|||||||.+||| .+|+++|+||+||+|||||++++++||+|+||+| |+++++++++
T Consensus 62 M~~sg~~~~~~~~~~~~vD~~gTGGdG~kt~n---i~a~ivAA~Gv~VaKhgnR~lss~~GTaD~LE~lpG~~~~ls~e~ 138 (434)
T PRK06078 62 MVNSGDTIDLSAIEGIKVDKHSTGGVGDTTTL---VLAPLVAAFGVPVAKMSGRGLGHTGGTIDKLESIKGFHVEISQED 138 (434)
T ss_pred HHHhCCcccCcccCCCeeEecCCCCCCCCchH---HHHHHHHcCCCCeeeeCCCCcCCCcchHHHHHhCCCCCCCCCHHH
Confidence 56667777532 348999999999999998 4899999999999999999999999999999999 9999999999
Q ss_pred HHHHHHhcCeEEEe-CCccChhhhchHHHHhhhCCCChhhhhhhccCC--------CCCCceEEEee--------ChhhH
Q 023663 77 VRRCVDEAGIGFMM-STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP--------ACVPFAVVGVY--------NENLV 139 (279)
Q Consensus 77 ~~~~l~~~g~~fl~-~~~~~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP--------~~~~~~v~Gv~--------h~~~~ 139 (279)
+.+++++.||+|++ +|.|||++++++++|++++ | ||.+ ||+|| +++.++|+||+ +++..
T Consensus 139 ~~~~l~~~G~~fl~~a~~~~PAdk~v~~lR~v~~--t-~n~l-PLi~~SImSKKlAag~~~~vldV~~G~gAfm~~~~~a 214 (434)
T PRK06078 139 FIKLVNENKVAVIGQSGNLTPADKKLYALRDVTA--T-VNSI-PLIASSIMSKKIAAGADAIVLDVKTGAGAFMKTVEDA 214 (434)
T ss_pred HHHHHHHhCcEEEccCCCcChhhhhhHHHhcccc--c-cChH-HhhhhHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHH
Confidence 99999999999999 4999999999999999999 4 9999 99999 89999999999 99999
Q ss_pred HHHHHHHHHcCCCeEEEEecCCcccccccCceEEEEEeCCeEEEEEeCCCCCCCCCCCCCCcCCCChHHHHHHHHHHhCC
Q 023663 140 LKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSG 219 (279)
Q Consensus 140 ~~~~~~~~~lG~~~alvv~GeG~dE~sp~~~t~v~~~~~g~~~~~~i~p~d~gl~~~~~~~~~~~~~~~~a~~~~~vL~G 219 (279)
+.+++++..+|.+ .+.+.++.++++ |++||.. .+++.++.+. +++|+|
T Consensus 215 ~~lA~~l~~lG~~---------------~g~~~~a~lt~~--------~~plG~~--------iGna~Ev~Ea-~~vL~G 262 (434)
T PRK06078 215 EELAHAMVRIGNN---------------VGRNTMAVISDM--------SQPLGRA--------IGNALEVLEA-IDTLQG 262 (434)
T ss_pred HHHHHHHHHHHHh---------------cCCeEEEEECCC--------Ccccccc--------CCCHHHHHHH-HHHHCC
Confidence 9999999999864 345666677764 7888862 4678888876 999999
Q ss_pred CC-chHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhhh
Q 023663 220 ER-GAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKH 274 (279)
Q Consensus 220 ~~-~~~~~~v~~naa~~L~~~g~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~ 274 (279)
+. .+++|.|+.||+.+|+..|+++++++|+++|+++|+||+|+++|++|+++|+.
T Consensus 263 ~~~~~~~d~v~~~A~~~L~~~g~~~~~~eg~~~a~e~l~sGkAl~kf~~~v~aqGg 318 (434)
T PRK06078 263 KGPKDLTELVLTLGSQMVVLAGKAKTLEEAREHLIEVMNNGKALEKFKEFLSAQGG 318 (434)
T ss_pred CCcccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccHHHHHHHHHHHHhCC
Confidence 84 57899999999999999999999999999999999999999999999999986
No 13
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=100.00 E-value=5.3e-42 Score=321.93 Aligned_cols=233 Identities=25% Similarity=0.305 Sum_probs=200.5
Q ss_pred CccccccccCC---CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHcC-CCCCCCHHH
Q 023663 1 MIKYATKVEGL---GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALG-VVIDLDPEG 76 (279)
Q Consensus 1 ~~~~~~~~~~~---~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LG-i~~~~s~~~ 76 (279)
|++++.+++.+ ..++|+|||||||.+ +||++|+++|++|+||+|||||++++++||+|+||+|| +++++++++
T Consensus 60 m~~~~~~l~~~~~~~~~vD~~gTGGdG~~---iSt~~a~ivAa~Gv~VaKhgnR~lss~~GTaD~LE~lgG~~v~ls~e~ 136 (405)
T TIGR02644 60 MIDSGEVLDLSSLPGPKVDKHSTGGVGDK---VSLVLGPIVAACGVKVAKMSGRGLGHTGGTIDKLESIPGFRTELSEAE 136 (405)
T ss_pred HHHhCCcCCCcccCCCeeEEeCCCCCCCC---chHHHHHHHHhCCCCEEeeCCCCCCCcchHHHHHHhcCCCCCCCCHHH
Confidence 45667666432 348999999999995 89999999999999999999999999999999999997 999999999
Q ss_pred HHHHHHhcCeEEEeCC-ccChhhhchHHHHhhhCCCChhhhhhhccCCCC--------CCceEEEe--------eChhhH
Q 023663 77 VRRCVDEAGIGFMMST-KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPAC--------VPFAVVGV--------YNENLV 139 (279)
Q Consensus 77 ~~~~l~~~g~~fl~~~-~~~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP~~--------~~~~v~Gv--------~h~~~~ 139 (279)
+.++++++||+|++++ +++|++++|+++|++++ |++|+ ||+||.- +.++|++| ++.+..
T Consensus 137 ~~~~l~~~G~~fl~~~~~l~PAdk~l~~lRd~~~--Tv~si--pLi~aSimSKK~A~G~~~~vlDVk~G~gAfm~~~e~a 212 (405)
T TIGR02644 137 FIEIVNKVGLAIIGQTKDLAPADKKLYALRDVTG--TVDSI--PLIASSIMSKKLAAGADAIVLDVKVGSGAFMKTLEDA 212 (405)
T ss_pred HHHHHHHcCeEEecCccccCcchhHHHHHhhccc--ccCcH--HHHHHHHHHHHHhcCCCeEEEeecccCCCCcCCHHHH
Confidence 9999999999999999 99999999999999999 99999 9999965 89999999 999999
Q ss_pred HHHHHHHHHcCCCeEE--EEecCCcccccccCceEEEEEeCCeEEEEEeCCCCCCCCCCCCCCcCCCChHHHHHHHHHHh
Q 023663 140 LKMANALQRFGLKRAL--VVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVL 217 (279)
Q Consensus 140 ~~~~~~~~~lG~~~al--vv~GeG~dE~sp~~~t~v~~~~~g~~~~~~i~p~d~gl~~~~~~~~~~~~~~~~a~~~~~vL 217 (279)
..+++.+..+|....+ ++...++||+ +|... +++.+ .+...++|
T Consensus 213 ~~LA~~~~~~g~~~g~~~~a~~t~md~p-------------------------lG~~i--------GnalE-v~Eai~~L 258 (405)
T TIGR02644 213 KELAKLMVEIGKGAGRKTSALLTDMNQP-------------------------LGRAI--------GNALE-VKEAVEFL 258 (405)
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCCCcc-------------------------ccCCC--------CChhh-HHHHHHHH
Confidence 9999998888754332 2222345544 34321 23223 23348899
Q ss_pred CCC-CchHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhhh
Q 023663 218 SGE-RGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKH 274 (279)
Q Consensus 218 ~G~-~~~~~~~v~~naa~~L~~~g~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~ 274 (279)
+|+ +.+++|.++.||+.+|+..|++.+.++|.++|+++|+||+|+++|++|++.|+.
T Consensus 259 ~g~~p~dl~e~~~~la~~~L~~~g~a~~~~~g~~~a~~~l~sG~Al~kf~~~v~aQGG 316 (405)
T TIGR02644 259 KGEGPADLKELTLALAAEMLLLAGIAKTEKEARALAEDVLESGKALEKFRRFVEAQGG 316 (405)
T ss_pred CCCCcHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHhCC
Confidence 998 467899999999999999999999999999999999999999999999999985
No 14
>PRK04350 thymidine phosphorylase; Provisional
Probab=100.00 E-value=2.4e-40 Score=315.71 Aligned_cols=235 Identities=26% Similarity=0.343 Sum_probs=203.2
Q ss_pred CccccccccCC-CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCCCCCCHHHHHH
Q 023663 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (279)
Q Consensus 1 ~~~~~~~~~~~-~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~s~~~~~~ 79 (279)
|++++.+++.+ ..++|+||||||+.+++ |+.+++++|++|++|+|||||+++|++||+|+||+|| +++++++++.+
T Consensus 140 M~~~g~~l~~~~~~~vDkhgTGGd~g~t~--S~~~apivAA~Gv~VaKhgnRaiss~sGTaD~LEaLg-~v~ls~e~~~~ 216 (490)
T PRK04350 140 MVETGERLDWDRPPVVDKHSIGGVPGNRT--TLIVVPIVAAAGLTIPKTSSRAITSPAGTADTMEVLA-PVDLSVEEIKR 216 (490)
T ss_pred HHHhCCcccCCCCCeEEecCCCCCCCCCE--eHHHHHHHHhCCCceeeecCCCCCCCCchHHHHHHhh-cCCCCHHHHHH
Confidence 56677777543 46899999999988875 6668888899999999999999999999999999999 99999999999
Q ss_pred HHHhcCeEEEe--CCccChhhhchHHHHhhhCCCChhhhhhhccC--------------CCCCCceEEEeeChhhHHHHH
Q 023663 80 CVDEAGIGFMM--STKYHPAMKFVRPVRKKLKVKTVFNILGPMLN--------------PACVPFAVVGVYNENLVLKMA 143 (279)
Q Consensus 80 ~l~~~g~~fl~--~~~~~P~l~~l~~lR~~lg~Rt~~n~l~~LlN--------------P~~~~~~v~Gv~h~~~~~~~~ 143 (279)
++++.||||+| +++|||++++++++|+.++++|++|++++++| |+++..+ +++.+....++
T Consensus 217 ~l~~~G~~flfG~a~~l~PAdk~l~~vR~~l~vds~~li~aSImSKKlA~G~~~lvlDVp~G~ga~---v~~~~~A~~LA 293 (490)
T PRK04350 217 VVEKVGGCLVWGGAVNLSPADDILIRVERPLSIDPRGQLVASILSKKIAAGSTHVVIDIPVGPTAK---VRSVEEARRLA 293 (490)
T ss_pred HHHHcCEEEEECCccccCHHHHHHHHHhhhcCCCcHHHHHHHHhhhHhhcCCCceEEecccCCCCc---CCCHHHHHHHH
Confidence 99999999999 89999999999999999999999999999999 9998887 89999999999
Q ss_pred HHHHHcCCCeEEEEecCCcccccccCceEEEEEeCCeEEEEEeCCCCCCCCCCCCCCcCCCChHHHHHHHHHHhCCC---
Q 023663 144 NALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE--- 220 (279)
Q Consensus 144 ~~~~~lG~~~alvv~GeG~dE~sp~~~t~v~~~~~g~~~~~~i~p~d~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~--- 220 (279)
+.+..+|....+.+ | ..++++. .|-.+| -.+..+++...++|+|+
T Consensus 294 ~~~~~vg~~~g~~v------~---------a~lTd~~------qPlG~~-----------iGnalEv~e~l~vL~g~~~g 341 (490)
T PRK04350 294 RLFEEVGDRLGLRV------E---------CAITDGS------QPIGRG-----------IGPALEARDVLAVLENDPDA 341 (490)
T ss_pred HHHHHHHHhcCCeE------E---------EEECCCC------eehhcc-----------CCchHHHHHHHHHhCCCCCC
Confidence 99998886544444 1 1233332 122222 22467788899999994
Q ss_pred CchHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhhh
Q 023663 221 RGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKH 274 (279)
Q Consensus 221 ~~~~~~~v~~naa~~L~~~g~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~ 274 (279)
+.++++.++.+|+.+|+..|.+ +.++|+++|++.|+||+|++||++|++.|+.
T Consensus 342 p~dl~e~~l~lA~~~L~~~g~~-~~~~g~~~a~~~L~sG~Al~kf~~ii~aQGG 394 (490)
T PRK04350 342 PNDLREKSLRLAGILLEMGGVA-PGGEGYALAREILESGKALEKFQEIIEAQGG 394 (490)
T ss_pred CHhHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCcHHHHHHHHHHHHcCC
Confidence 3578899999999999999977 9999999999999999999999999999986
No 15
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=100.00 E-value=7.2e-35 Score=276.04 Aligned_cols=239 Identities=23% Similarity=0.286 Sum_probs=179.4
Q ss_pred CccccccccC-----CCCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHc-CCCCCCCH
Q 023663 1 MIKYATKVEG-----LGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDP 74 (279)
Q Consensus 1 ~~~~~~~~~~-----~~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~L-Gi~~~~s~ 74 (279)
|++++.+++. ....+|+|||||||+ |+||++|+++|++|+||+|||||++++++||+|+||+| |+++++|+
T Consensus 63 m~~sg~~i~~~~~d~~~~~vDkhgTGGdG~---niS~~~a~ivAa~Gv~VaKhg~R~lss~~GTaD~LE~LpG~~v~ls~ 139 (440)
T PRK05820 63 MRDSGEVLDWSSLNLNGPIVDKHSTGGVGD---KISLMLAPMVAACGGYVPMISGRGLGHTGGTLDKLEAIPGYRAFPSN 139 (440)
T ss_pred HHHhCCcCCCccccCCCCeEEEcCCCCCCc---cHHHHHHHHHHhCCCCEEeeCCCCCCCcccHHHHHHhCCCCCCCCCH
Confidence 3455555532 235799999999998 68999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHhcCeEEEeCC-ccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHcCCCe
Q 023663 75 EGVRRCVDEAGIGFMMST-KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKR 153 (279)
Q Consensus 75 ~~~~~~l~~~g~~fl~~~-~~~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lG~~~ 153 (279)
+++.++++++||+|++++ .|||++++++++|++++ |+-.. ||+-. +|.+|++ ..|. .
T Consensus 140 e~~~~~l~~~G~~~~~~~~~l~PAdk~l~~lRdvt~--tvds~--pli~a--------SImSKK~---------A~G~-~ 197 (440)
T PRK05820 140 DRFREILKDVGVAIIGQTSDLAPADKRLYALRDVTA--TVESI--PLITA--------SILSKKL---------AEGL-D 197 (440)
T ss_pred HHHHHHHHHcCeEEEcCchhcChHHHHHHHHhcccC--CCChH--HHHHH--------HHHHHHH---------HcCC-C
Confidence 999999999999999999 99999999999999998 55554 44433 3444443 2677 4
Q ss_pred EEEEe---cCC-----cccccccCceEEEEE--eCCeEEEEEeCC--CCCCCCCCCCCCcCCCChHHHHHHHHHHhCCC-
Q 023663 154 ALVVH---SEG-----LDEMSPLGPGLILDV--TQEKIERFSFDP--LDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE- 220 (279)
Q Consensus 154 alvv~---GeG-----~dE~sp~~~t~v~~~--~~g~~~~~~i~p--~d~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~- 220 (279)
++|+- |.| .||..-...+.+ .+ .-|.-....++- +.+|-. .+++ ..+....++|+|+
T Consensus 198 ~lvlDVk~G~gAfmkt~~~A~~La~~mv-~ig~~~g~~~~a~lTdm~qPlG~~--------iGna-lEv~Eai~~L~g~~ 267 (440)
T PRK05820 198 ALVLDVKVGSGAFMKTYEEARELARSMV-EVANGAGVRTTALLTDMNQPLASS--------AGNA-LEVREAVEFLTGGY 267 (440)
T ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHH-HHHHHcCCeEEEEEccCCCcccCc--------cchH-HHHHHHHHHHCCCC
Confidence 56552 544 344433333222 11 112212222211 111210 1233 3344467899998
Q ss_pred -CchHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhhh
Q 023663 221 -RGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKH 274 (279)
Q Consensus 221 -~~~~~~~v~~naa~~L~~~g~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~ 274 (279)
+.++.+.++.-++.+|+..|.+.+.++|.+++++.|+||+|++||++|++.|+.
T Consensus 268 gp~dl~e~~~~la~~ml~~~g~~~~~~~g~~~~~~~l~sG~Al~kF~~~v~aQGG 322 (440)
T PRK05820 268 RPPRLVEVTMALAAEMLVLAGLAKDEAEARADLAAVLDSGKAAERFGRMVAAQGG 322 (440)
T ss_pred CChhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCC
Confidence 356778888889999999999999999999999999999999999999999986
No 16
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=100.00 E-value=5.3e-34 Score=268.98 Aligned_cols=240 Identities=25% Similarity=0.286 Sum_probs=180.2
Q ss_pred CccccccccCC-----CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHc-CCCCCCCH
Q 023663 1 MIKYATKVEGL-----GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDP 74 (279)
Q Consensus 1 ~~~~~~~~~~~-----~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~L-Gi~~~~s~ 74 (279)
|++.+.+++.+ ..++|+|||||||. |+||++|+++|++|++|+|||||++++++||+|+||+| |+++++|+
T Consensus 62 M~~sg~~i~~~~~~~~~~~vDkhgTGGdG~---niSt~~apivAA~Gv~VaKhgnR~iss~~GTaD~LEalpG~~v~ls~ 138 (437)
T TIGR02643 62 MRDSGDVLDWRSLDLNGPVVDKHSTGGVGD---VVSLMLGPIVAACGGYVPMISGRGLGHTGGTLDKLEAIPGYDIFPDP 138 (437)
T ss_pred HHHhCCcccCcccccCCCeeEecCCCCCCc---chhHHHHHHHHhCCCCeeeecCCCcCCCCchHHHHHhCCCCCCCCCH
Confidence 45566666432 45899999999999 68999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHhcCeEEEe-CCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHcCCCe
Q 023663 75 EGVRRCVDEAGIGFMM-STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKR 153 (279)
Q Consensus 75 ~~~~~~l~~~g~~fl~-~~~~~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lG~~~ 153 (279)
+++.+++++.||+|+. ++.++|++++++++|+..+ |+-.+ ||+-. +|.+|++ ..|.+
T Consensus 139 e~~~~~l~~~g~~f~gqa~~l~PADk~ly~lRDvt~--tVds~--pLi~a--------SImSKKl---------A~g~d- 196 (437)
T TIGR02643 139 ALFRRVVKDVGVAIIGQTADLAPADKRFYATRDVTA--TVESI--PLITA--------SILSKKL---------AAGLD- 196 (437)
T ss_pred HHHHHHHHHcCceEEccCCCcCcchhceeeeeeecC--CCCcH--HHHHH--------HHHHHHH---------HcCCC-
Confidence 9999999999999998 7999999999999998877 55444 55444 4555554 25664
Q ss_pred EEEEe---cCC-----cccccccCceEEEE-EeCCeEEEEEeCC--CCCCCCCCCCCCcCCCChHHHHHHHHHHhCCC--
Q 023663 154 ALVVH---SEG-----LDEMSPLGPGLILD-VTQEKIERFSFDP--LDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE-- 220 (279)
Q Consensus 154 alvv~---GeG-----~dE~sp~~~t~v~~-~~~g~~~~~~i~p--~d~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~-- 220 (279)
++|+- |.| .+|..-...+.+.. -.-|.-....++- +.+|.. .+++- .+....++|+|+
T Consensus 197 ~ivlDVk~G~gAfmk~~~~A~~LA~~mv~ig~~~g~~~~a~iTdm~qPlG~~--------iGnal-Ev~Eai~~L~g~~g 267 (437)
T TIGR02643 197 ALVMDVKVGNGAFMPTYEESEELARSLVDVANGAGVRTTALITDMNQPLASA--------AGNAV-EVRNAVDFLTGEKR 267 (437)
T ss_pred eEEEEcCcCCCCcCCCHHHHHHHHHHHHHHHHHcCCeEEEEECCCCCccccc--------cCcHH-HHHHHHHHHCCCCC
Confidence 56652 555 23332222211100 0112112222221 122211 13433 334467899997
Q ss_pred CchHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhhh
Q 023663 221 RGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKH 274 (279)
Q Consensus 221 ~~~~~~~v~~naa~~L~~~g~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~ 274 (279)
+.++.+.++.-++.+|...|++.+.++|.+++++.|+||+|+++|++|++.|+.
T Consensus 268 p~dl~e~~~~la~~ml~~~g~~~~~~~~~~~~~~~l~sG~Al~kF~~~v~aQGG 321 (437)
T TIGR02643 268 NPRLEDVTMALAAEMLVSGGLAADEAEARAKLQAVLDSGRAAERFARMVAALGG 321 (437)
T ss_pred CccHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHcCC
Confidence 467889999999999999999999999999999999999999999999999986
No 17
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=100.00 E-value=1e-31 Score=256.50 Aligned_cols=237 Identities=24% Similarity=0.301 Sum_probs=176.4
Q ss_pred CccccccccCC-CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCCCCCCHHHHHH
Q 023663 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (279)
Q Consensus 1 ~~~~~~~~~~~-~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~s~~~~~~ 79 (279)
|++++.+++.. ..++|+||||||+.+++|++ +++++|++|++|+|||||+++|++||+|+||.|| +++++++++.+
T Consensus 145 M~~sg~~l~~~~~~~vDkhgTGGd~gnk~ni~--~apIvAA~Gv~VaKhsnRaits~sGTAD~LE~Lg-~v~ls~e~~~~ 221 (493)
T TIGR02645 145 MADTGEMLEWDREPIMDKHSIGGVPGNKTSLI--VVPIVAAAGLLIPKTSSRAITSAAGTADTMEVLT-RVALSAEEIKR 221 (493)
T ss_pred HHHhCCCccCCCCCeEEEeCCCCCCCCCEeHH--HHHHHHhCCCCeeeeCCCCcCCCccHHHHHHHhc-CCCCCHHHHHH
Confidence 45666666543 45899999999999988774 7777799999999999999999999999999999 99999999999
Q ss_pred HHHhcCeEEEe--CCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHcCCCeEEEE
Q 023663 80 CVDEAGIGFMM--STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVV 157 (279)
Q Consensus 80 ~l~~~g~~fl~--~~~~~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lG~~~alvv 157 (279)
++++.||||++ +++|||++++++++|+.+++.|+--++. +|.+|++ ..|.+ .+|+
T Consensus 222 ~ve~~G~~fl~G~a~~l~PAdk~i~~vR~~l~vds~~li~a-------------SImSKKl---------A~G~~-~lvl 278 (493)
T TIGR02645 222 IVEKVGGCLVWGGALNLAPADDVLIRVERPLSIDPRAQMLA-------------SIMSKKI---------AAGST-HVLI 278 (493)
T ss_pred HHHHCCEEEEECCCcccCHHHHHHHHHHhhcCCCcHHHHHH-------------HHHHHHH---------hcCCC-eEEE
Confidence 99999999999 8999999999999999999988843332 3444444 25654 4454
Q ss_pred e---cCC-----cccccccCceEEEEE--eCCeEEEEEeCC--CCCCCCCCCCCCcCCCChHHHHHHHHHHhCCC---Cc
Q 023663 158 H---SEG-----LDEMSPLGPGLILDV--TQEKIERFSFDP--LDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE---RG 222 (279)
Q Consensus 158 ~---GeG-----~dE~sp~~~t~v~~~--~~g~~~~~~i~p--~d~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~---~~ 222 (279)
- |.| .+|..-.....+ .+ .-|.-....++- +.+|- .-.+...+....++|+|+ +.
T Consensus 279 Dvk~G~gAf~~~~~~A~~La~~~~-~vg~~~G~~~~a~iTdm~qPlG~---------~iGnalEv~Eal~~L~g~~~~p~ 348 (493)
T TIGR02645 279 DIPVGPGAKVRSLQEAERLARLFI-ELGDRLGVRVECAITYGSQPIGR---------GIGPALEAKEALAVLERSPAAPF 348 (493)
T ss_pred eccccCCCcCCCHHHHHHHHHHHH-HHHHHcCCeEEEEECCCCCcccc---------ccCcHHHHHHHHHHHCCCCCCCc
Confidence 2 443 222221111111 00 001111122211 11221 112344556678999997 35
Q ss_pred hHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhhh
Q 023663 223 AIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKH 274 (279)
Q Consensus 223 ~~~~~v~~naa~~L~~~g~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~ 274 (279)
++.+.++.-|+.+|...|.+. ..+|.++|++.|+||+|++||++|++.|+.
T Consensus 349 dL~e~~~~la~~~L~~~g~~~-~~~g~~~a~~~l~sG~Al~kf~~ii~aQGG 399 (493)
T TIGR02645 349 SLREKSLLLAGILLEMGGAAP-RGAGKELARELLDSGKALEKMKEIIEAQGG 399 (493)
T ss_pred cHHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHhCcHHHHHHHHHHHHcCC
Confidence 788989999999999999987 799999999999999999999999999986
No 18
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=99.97 E-value=5.6e-31 Score=251.46 Aligned_cols=237 Identities=23% Similarity=0.281 Sum_probs=174.0
Q ss_pred CccccccccCC-CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCCCCCCHHHHHH
Q 023663 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (279)
Q Consensus 1 ~~~~~~~~~~~-~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~s~~~~~~ 79 (279)
|++++.+++.+ ..++|+|||||||.++||++ +++++|+||++|+|||||+++|++||+|+||.|+ +++++++++.+
T Consensus 146 M~~sg~~l~~~~~~vvDkhgTGGd~gnk~nl~--~apIVAA~Gv~VaKhsnRaits~sGTaD~LEsL~-~v~ls~e~~~~ 222 (500)
T TIGR03327 146 MAETGDMLSFDRHPIMDKHSIGGVPGNKISLL--VVPIVAAAGLTIPKTSSRAITSAAGTADVMEVLA-PVEFSADEIKR 222 (500)
T ss_pred HHHhCCcccCCCCCeEEEeCCCCCCCCCEEHH--HHHHHHhCCCCeeeeCCCCcCCCccHHHHHHHhh-CCCCCHHHHHH
Confidence 45566666443 45899999999999988885 6777799999999999999999999999999995 99999999999
Q ss_pred HHHhcCeEEEe--CCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHcCCCeEEEE
Q 023663 80 CVDEAGIGFMM--STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVV 157 (279)
Q Consensus 80 ~l~~~g~~fl~--~~~~~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lG~~~alvv 157 (279)
++++.||||++ +++|||++++++.+|+.+.+.++ ||+-- +|.+|++ ..|.+ .+|+
T Consensus 223 ~v~~~G~~fl~Gqa~~l~PAdk~l~alrdt~tvds~-----~li~a--------SImSKKl---------A~G~d-~lvl 279 (500)
T TIGR03327 223 IVEKTGGCLVWGGATNLAPADDKIIKVERPLSIDPR-----GQMLA--------SVMAKKG---------AIGAD-HVVI 279 (500)
T ss_pred HHHHCCEEEEECCccccCHHHHHHHHhccccCCCcH-----HHHHH--------HHHHHHH---------HcCCC-eEEE
Confidence 99999999999 89999999999999996666555 33332 4444444 25664 4555
Q ss_pred e---cCC-----cccccccCceEEEEE--eCCeEEEEEeCC--CCCCCCCCCCCCcCCCChHHHHHHHHHHhCC-C-Cch
Q 023663 158 H---SEG-----LDEMSPLGPGLILDV--TQEKIERFSFDP--LDYGIPRCTLESLQGGGPAYNAEVLRRVLSG-E-RGA 223 (279)
Q Consensus 158 ~---GeG-----~dE~sp~~~t~v~~~--~~g~~~~~~i~p--~d~gl~~~~~~~~~~~~~~~~a~~~~~vL~G-~-~~~ 223 (279)
- |.| .+|..-...+.+ .+ .-|......++- +.+|-. .++ ...+....++|+| + +.+
T Consensus 280 DVk~G~gAfm~~~~~A~~LA~~mv-~vg~~~G~~~~a~iTdm~qPlG~~--------iGn-aLEv~Eal~~L~g~~~p~d 349 (500)
T TIGR03327 280 DIPVGKGAKVKTVEEGRKLARDFI-ELGDRLGMNVECAITYGGQPIGRA--------IGP-ALEAKEALKVLEDGEGPNS 349 (500)
T ss_pred EcCcCCCCcCCCHHHHHHHHHHHH-HHHHHcCCeEEEEECCCCCccccc--------cCc-HHHHHHHHHHhcCCCCCcc
Confidence 2 444 222221111111 00 011111222211 112210 123 3445557799999 4 467
Q ss_pred HHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhhh
Q 023663 224 IADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKH 274 (279)
Q Consensus 224 ~~~~v~~naa~~L~~~g~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~ 274 (279)
+.+.++.-|+.+|...|.+. .++|.++|++.|+||+|++||++|++.|+.
T Consensus 350 L~e~~~~la~~~L~~~g~~~-~~~g~~~a~~~l~sG~Al~kf~~ii~aQGG 399 (500)
T TIGR03327 350 LIEKSLSLAGILLEMGGVAP-RGEGKNLALEILESGKALEKFKEIIAAQGG 399 (500)
T ss_pred HHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHhCcHHHHHHHHHHHHcCC
Confidence 88999999999999999987 799999999999999999999999999986
No 19
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=99.87 E-value=9.3e-22 Score=182.53 Aligned_cols=229 Identities=24% Similarity=0.318 Sum_probs=171.6
Q ss_pred CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHc-CCCCCCCHHHHHHHHHhcCeEEEe
Q 023663 12 GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDPEGVRRCVDEAGIGFMM 90 (279)
Q Consensus 12 ~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~L-Gi~~~~s~~~~~~~l~~~g~~fl~ 90 (279)
...+|+|+|||.|.++ |+.+++++|+||++|.|..+|++++..|+.|.||.+ |++++.+.++..+++.++|+....
T Consensus 77 ~~~vDKHStGGVgdk~---sL~l~PiVAA~Gl~VpK~SgRgLghtGGT~DklEsi~g~~~~~~e~~fi~~~~~~g~aiiG 153 (435)
T COG0213 77 GPVVDKHSTGGVGDKT---SLILVPIVAAAGLPVPKMSGRGLGHTGGTLDKLESIPGVNLELDEIKFIEQVKDNGVAIIG 153 (435)
T ss_pred CceecccCCCCCCccc---chhHHHHHHhcCCcccccccCccccCccchhhhhccCCcccCcCHHHHHHHhhcCCeEEEe
Confidence 4689999999999775 999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CC-ccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHcCCCeEEEEe---cCC-----
Q 023663 91 ST-KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH---SEG----- 161 (279)
Q Consensus 91 ~~-~~~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lG~~~alvv~---GeG----- 161 (279)
+. ++.|+.++|+.+|+.++ |+-.+ ||+-- +|.++++ ..|. .++|+- |.|
T Consensus 154 qs~~LaPADkklyalrdvta--TVdsi--pLias--------SIMSKKl---------A~G~-~~ivlDVkvG~GAfmkt 211 (435)
T COG0213 154 QSGNLAPADKKLYALRDVTA--TVDSI--PLIAS--------SIMSKKL---------AAGA-DAIVLDVKVGSGAFMKT 211 (435)
T ss_pred CcCCcCcccceeEEeeeccc--cCCcH--HHHHH--------HHHHHHH---------hccC-CcEEEEecccCCCccCC
Confidence 95 99999999999999999 33333 44433 3444444 2566 455553 455
Q ss_pred cccccccCceEEEEEeC--CeEEEEEeCC--CCCCCCCCCCCCcCCCChHHHHHHHHHHhCCCC-chHHHHHHHHHHHHH
Q 023663 162 LDEMSPLGPGLILDVTQ--EKIERFSFDP--LDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIADALILNAAAAL 236 (279)
Q Consensus 162 ~dE~sp~~~t~v~~~~~--g~~~~~~i~p--~d~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~-~~~~~~v~~naa~~L 236 (279)
.++..-.....| ++.+ |......|+- +.+|-. .+++ -.++-..+.|.|+. .++.|.++.-++.+|
T Consensus 212 ~~~a~~LA~~mv-~ig~~~g~~t~a~iTdm~QPLG~a--------iGna-lEv~Eal~~L~g~~p~dL~e~~l~la~~mL 281 (435)
T COG0213 212 VEDARELAKAMV-EIGKGLGRKTTAVITDMNQPLGRA--------IGNA-LEVREALETLKGKGPPDLVELSLALAGEML 281 (435)
T ss_pred HHHHHHHHHHHH-HHHHhcCCeEEEEEcCCCCchhhh--------hccH-HHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 222221111111 1111 1112222211 112210 1233 33444668888873 578899999999999
Q ss_pred HHcccCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhhhh
Q 023663 237 LVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKHL 275 (279)
Q Consensus 237 ~~~g~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~ 275 (279)
...|.+++.+||.+++++.|+||+|+++|++|++.|+..
T Consensus 282 ~~~g~a~~~~~a~~~~~~vl~sGkA~ekF~~~v~aQGGd 320 (435)
T COG0213 282 EMTGLAKTGEEAKAKAREVLESGKALEKFKEIVAAQGGD 320 (435)
T ss_pred HHcCccCccHHHHHHHHHHHhCchHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999853
No 20
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=77.42 E-value=2.4 Score=32.43 Aligned_cols=58 Identities=24% Similarity=0.178 Sum_probs=42.5
Q ss_pred cceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCCCC
Q 023663 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID 71 (279)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~ 71 (279)
++|+.||=++|..-++=+.-+---|...|.|+....|.+..++....+.|+.+|+++.
T Consensus 2 l~D~dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~ 59 (101)
T PF13344_consen 2 LFDLDGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVD 59 (101)
T ss_dssp EEESTTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--
T ss_pred EEeCccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCC
Confidence 4688888888888666566666667778999999999887777777888899998864
No 21
>PRK10444 UMP phosphatase; Provisional
Probab=70.85 E-value=12 Score=33.24 Aligned_cols=71 Identities=13% Similarity=-0.009 Sum_probs=52.2
Q ss_pred cceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCCCCCC-----HHHHHHHHHhc
Q 023663 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLD-----PEGVRRCVDEA 84 (279)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~s-----~~~~~~~l~~~ 84 (279)
++|+-||=++|...++-+.-+---|.+.|.+++.--|++..+.....+-|+.+|+++..+ ...+.+.|.+.
T Consensus 5 ~~DlDGtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~~i~ts~~~~~~~L~~~ 80 (248)
T PRK10444 5 ICDIDGVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQ 80 (248)
T ss_pred EEeCCCceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHhhEecHHHHHHHHHHhC
Confidence 478889888777655545544456788999999999988767777888899999976532 34566667764
No 22
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=69.19 E-value=50 Score=31.96 Aligned_cols=135 Identities=15% Similarity=0.197 Sum_probs=74.8
Q ss_pred CcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHH----HcCCCC--CCCHHHHHHHHH---h
Q 023663 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLE----ALGVVI--DLDPEGVRRCVD---E 83 (279)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe----~LGi~~--~~s~~~~~~~l~---~ 83 (279)
.++=++|.+|.|+.|.-...++.+.+...|.+|..-..+ +.+.|+.+-|. .+|+++ ..++++..+.++ .
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D--~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~ 299 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD--TYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRD 299 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC--ccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCC
Confidence 466689999999985322222222222457788765433 34566544443 467765 356666666555 4
Q ss_pred cCeEEEeCCccChhhh-chHHHHhhhCCCChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHcCCCeEEEEe
Q 023663 84 AGIGFMMSTKYHPAMK-FVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (279)
Q Consensus 84 ~g~~fl~~~~~~P~l~-~l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lG~~~alvv~ 158 (279)
.-+.++..+-+.|... .+-.+++.+. ...+|......+-.-..+.-+..+.+.+..++..+.++-+
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~---------~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TK 366 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIE---------FSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTK 366 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHh---------ccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEec
Confidence 5678888887766532 2233443322 0123432223333334555566667777788875544444
No 23
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=67.29 E-value=60 Score=28.68 Aligned_cols=71 Identities=10% Similarity=0.057 Sum_probs=49.0
Q ss_pred cceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCCCC-----CCHHHHHHHHHhc
Q 023663 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID-----LDPEGVRRCVDEA 84 (279)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~-----~s~~~~~~~l~~~ 84 (279)
++|+.||=++|.+.++-..-+---+.+.|++++.--|.+.-+.....+.|+.+|+++. .+...+.+.|.+.
T Consensus 5 ~~D~DGtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~~~~~~~~l~~~ 80 (249)
T TIGR01457 5 LIDLDGTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTASMATADYMNDL 80 (249)
T ss_pred EEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeHHHHHHHHHHhc
Confidence 5788999888888766433333357888999987776665555567889999999865 2233445666664
No 24
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=61.27 E-value=6.1 Score=36.45 Aligned_cols=44 Identities=25% Similarity=0.356 Sum_probs=33.6
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHH
Q 023663 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEA 65 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~ 65 (279)
+.|-||.|+.| ++.+.|+-+|+.|.+|+.-..+ +.....|+|..
T Consensus 6 ~~GKGGVGKTT--~aaA~A~~~A~~G~rtLlvS~D---pa~~L~d~l~~ 49 (305)
T PF02374_consen 6 FGGKGGVGKTT--VAAALALALARRGKRTLLVSTD---PAHSLSDVLGQ 49 (305)
T ss_dssp EEESTTSSHHH--HHHHHHHHHHHTTS-EEEEESS---TTTHHHHHHTS
T ss_pred EecCCCCCcHH--HHHHHHHHHhhCCCCeeEeecC---CCccHHHHhCC
Confidence 68999999998 7888999999999999987554 33445666643
No 25
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=56.43 E-value=1.6e+02 Score=28.72 Aligned_cols=131 Identities=10% Similarity=0.136 Sum_probs=74.9
Q ss_pred CcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHH----HcCCCCC--CCHHHHHHHHHh---
Q 023663 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLE----ALGVVID--LDPEGVRRCVDE--- 83 (279)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe----~LGi~~~--~s~~~~~~~l~~--- 83 (279)
..+=++|.+|.|+.|+=.- .|.-+...|.+|..--.+ +.+.++.+-|. .+|+++. .+++++.+.++.
T Consensus 242 ~vI~LVGptGvGKTTTiaK--LA~~L~~~GkkVglI~aD--t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAK--MAWQFHGKKKTVGFITTD--HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred cEEEEECCCCCcHHHHHHH--HHHHHHHcCCcEEEEecC--CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 4677999999999852222 222345678888765443 45556544443 4688764 678887777743
Q ss_pred ---cCeEEEeCCccChh-hhchHHHHhhhCCCChhhhhhhccCCCCCCceEEEe-eChhhHHHHHHHHHHcCCCeEEEEe
Q 023663 84 ---AGIGFMMSTKYHPA-MKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGV-YNENLVLKMANALQRFGLKRALVVH 158 (279)
Q Consensus 84 ---~g~~fl~~~~~~P~-l~~l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv-~h~~~~~~~~~~~~~lG~~~alvv~ 158 (279)
.-+.++..+--++. ...+..+++.+... .|. ..+.|+.. ....-+....+.+..+++++.++-+
T Consensus 318 ~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~----------~Pd-evlLVLsATtk~~d~~~i~~~F~~~~idglI~TK 386 (436)
T PRK11889 318 EARVDYILIDTAGKNYRASETVEEMIETMGQV----------EPD-YICLTLSASMKSKDMIEIITNFKDIHIDGIVFTK 386 (436)
T ss_pred ccCCCEEEEeCccccCcCHHHHHHHHHHHhhc----------CCC-eEEEEECCccChHHHHHHHHHhcCCCCCEEEEEc
Confidence 36788888655553 22344444443321 132 22444443 2333445566677778886655555
No 26
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=56.33 E-value=32 Score=30.67 Aligned_cols=73 Identities=21% Similarity=0.152 Sum_probs=49.3
Q ss_pred cceeeCCCCCCCC----CccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCCCC----CC-HHHHHHHHHhc
Q 023663 14 AVDIVGTGGDGAN----TVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID----LD-PEGVRRCVDEA 84 (279)
Q Consensus 14 ~~D~~gtggdG~~----t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~----~s-~~~~~~~l~~~ 84 (279)
++|+-||=++|.. -++-+.-+---+.+.|++++.--|++..+.....+.|+.+|+++. .| ...+.+.|.+.
T Consensus 5 ~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i~ts~~~~~~~l~~~ 84 (257)
T TIGR01458 5 LLDISGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFTPAPAARQLLEEK 84 (257)
T ss_pred EEeCCCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEcHHHHHHHHHHhc
Confidence 4677788555443 344333344456778999999999887777778899999999864 12 23456677776
Q ss_pred Ce
Q 023663 85 GI 86 (279)
Q Consensus 85 g~ 86 (279)
++
T Consensus 85 ~~ 86 (257)
T TIGR01458 85 QL 86 (257)
T ss_pred CC
Confidence 54
No 27
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=54.62 E-value=46 Score=28.53 Aligned_cols=131 Identities=22% Similarity=0.348 Sum_probs=72.9
Q ss_pred cceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHH----HHcCCCCC-----CCHHH-HHHHHH-
Q 023663 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVL----EALGVVID-----LDPEG-VRRCVD- 82 (279)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvL----e~LGi~~~-----~s~~~-~~~~l~- 82 (279)
++=.+|..|.|+.| -+.=+|+..... |.+|..... .+.|.|..|-| +.+|+++. .++.+ +.+.++
T Consensus 3 vi~lvGptGvGKTT-t~aKLAa~~~~~-~~~v~lis~--D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 3 VIALVGPTGVGKTT-TIAKLAARLKLK-GKKVALISA--DTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp EEEEEESTTSSHHH-HHHHHHHHHHHT-T--EEEEEE--STSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCchHh-HHHHHHHHHhhc-cccceeecC--CCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 44578999999974 122233444334 888888775 34788866555 55588752 23433 333444
Q ss_pred --h--cCeEEEeCCccChhhhc-hHHHHhhhCCCChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHcCCCeEEEE
Q 023663 83 --E--AGIGFMMSTKYHPAMKF-VRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVV 157 (279)
Q Consensus 83 --~--~g~~fl~~~~~~P~l~~-l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lG~~~alvv 157 (279)
+ .-..++..+-.+|.... +-.+++ +.+. ++|...-..+-.-.+.+-.+...+..+..+.+..++-
T Consensus 79 ~~~~~~D~vlIDT~Gr~~~d~~~~~el~~------~~~~----~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlT 148 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAGRSPRDEELLEELKK------LLEA----LNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILT 148 (196)
T ss_dssp HHHTTSSEEEEEE-SSSSTHHHHHHHHHH------HHHH----HSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEE
T ss_pred HhhcCCCEEEEecCCcchhhHHHHHHHHH------Hhhh----cCCccceEEEecccChHHHHHHHHHhhcccCceEEEE
Confidence 4 45899999988886543 333333 2222 1444333334444455555556666677788765555
Q ss_pred e
Q 023663 158 H 158 (279)
Q Consensus 158 ~ 158 (279)
|
T Consensus 149 K 149 (196)
T PF00448_consen 149 K 149 (196)
T ss_dssp S
T ss_pred e
Confidence 5
No 28
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=53.75 E-value=66 Score=29.40 Aligned_cols=122 Identities=17% Similarity=0.203 Sum_probs=60.7
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCC-CcEEeecCCCCCCcccHHHHHHH----c--CCCCCCCHHHHHHHHHhcCeE
Q 023663 15 VDIVGTGGDGANTVNISTGASILAAACG-AKVAKQGSRSSSSACGSADVLEA----L--GVVIDLDPEGVRRCVDEAGIG 87 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G-~~V~kHG~~~~~~~~Gs~dvLe~----L--Gi~~~~s~~~~~~~l~~~g~~ 87 (279)
+|++|.-.++.+.+.-...+-..+...| +++..|.+...++ .-..+.++. + |+.+..+++.. +.+.+.|+.
T Consensus 139 ~Dl~g~E~~~~~~~~~f~~~~~~ar~~g~l~~t~HaGE~~~~-~~v~~~~~~~~~RIgHg~~~~~~p~~~-~~l~~~~i~ 216 (305)
T cd00443 139 IDLVGDESKGENPLRDFYSYYEYARRLGLLGLTLHCGETGNR-EELLQALLLLPDRIGHGIFLLKHPELI-YLVKLRNIP 216 (305)
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHHcCCcceEEeecCCCCh-HHHHHHHHhccceeeceEecCCCHHHH-HHHHHcCCE
Confidence 5666644433111111222333334569 9999999987322 122334432 2 55555555655 446666665
Q ss_pred EEeCCccChhhhc--------hHHHHhhhCCCChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHcCC
Q 023663 88 FMMSTKYHPAMKF--------VRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGL 151 (279)
Q Consensus 88 fl~~~~~~P~l~~--------l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lG~ 151 (279)
+-.-|.-+=.+.. +..++ +-|++-.+||=.| ++++..+.+-|..+....|.
T Consensus 217 ie~CP~SN~~~~~~~~~~~hP~~~~~-~~G~~v~i~TDd~------------~~~~~~l~~E~~~~~~~~~l 275 (305)
T cd00443 217 IEVCPTSNVVLGTVQSYEKHPFMRFF-KAGLPVSLSTDDP------------GIFGTSLSEEYSLAAKTFGL 275 (305)
T ss_pred EEECcchhhhhcCCCChhhChHHHHH-HCCCeEEEeCCCC------------cccCCChHHHHHHHHHHcCc
Confidence 5544422111111 22222 3477766666444 44555666666666655443
No 29
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=53.00 E-value=3e+02 Score=28.99 Aligned_cols=134 Identities=16% Similarity=0.202 Sum_probs=74.2
Q ss_pred CCcceeeCCCCCCCCCccchHHHHHHHHhCC-CcEEeecCCCCCCcccHHHHHH----HcCCCCC--CCHHHHHHHHH--
Q 023663 12 GDAVDIVGTGGDGANTVNISTGASILAAACG-AKVAKQGSRSSSSACGSADVLE----ALGVVID--LDPEGVRRCVD-- 82 (279)
Q Consensus 12 ~~~~D~~gtggdG~~t~nis~~aA~vlA~~G-~~V~kHG~~~~~~~~Gs~dvLe----~LGi~~~--~s~~~~~~~l~-- 82 (279)
+.++=++|..|.||.|. +.-+++......| .+|..-..+ +.+.|+.+-|+ .+|+++. .+++++.+.++
T Consensus 185 g~Vi~lVGpnGvGKTTT-iaKLA~~~~~~~G~kkV~lit~D--t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~ 261 (767)
T PRK14723 185 GGVLALVGPTGVGKTTT-TAKLAARCVAREGADQLALLTTD--SFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAAL 261 (767)
T ss_pred CeEEEEECCCCCcHHHH-HHHHHhhHHHHcCCCeEEEecCc--ccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh
Confidence 35777999999999731 1112222223345 466654433 46777666554 5587664 57777666655
Q ss_pred -hcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEEe-eChhhHHHHHHHHHHc---CCCeEEEE
Q 023663 83 -EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGV-YNENLVLKMANALQRF---GLKRALVV 157 (279)
Q Consensus 83 -~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv-~h~~~~~~~~~~~~~l---G~~~alvv 157 (279)
...+.++..+-.+|....++..-+.+. ...+|.. .+.|+.- ++.+-+..+.+.++.. +.+..++-
T Consensus 262 ~~~D~VLIDTAGRs~~d~~l~eel~~l~---------~~~~p~e-~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlT 331 (767)
T PRK14723 262 GDKHLVLIDTVGMSQRDRNVSEQIAMLC---------GVGRPVR-RLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIIT 331 (767)
T ss_pred cCCCEEEEeCCCCCccCHHHHHHHHHHh---------ccCCCCe-EEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEe
Confidence 457889999887776655544433322 1234432 2334433 3444444455555543 56555555
Q ss_pred e
Q 023663 158 H 158 (279)
Q Consensus 158 ~ 158 (279)
|
T Consensus 332 K 332 (767)
T PRK14723 332 K 332 (767)
T ss_pred c
Confidence 5
No 30
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=51.05 E-value=79 Score=25.89 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=15.2
Q ss_pred HHHHHHHhCCCcEEeec
Q 023663 33 GASILAAACGAKVAKQG 49 (279)
Q Consensus 33 ~aA~vlA~~G~~V~kHG 49 (279)
-+|..++++|.++..+|
T Consensus 41 n~a~~l~~LG~~~~~~~ 57 (196)
T cd00287 41 NVAVALARLGVSVTLVG 57 (196)
T ss_pred HHHHHHHHCCCcEEEEE
Confidence 36888999999999999
No 31
>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=48.72 E-value=19 Score=32.47 Aligned_cols=78 Identities=31% Similarity=0.334 Sum_probs=48.2
Q ss_pred eCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCc-----cc-HHHHHHHc---------CCCCCCCHHHHHHHHH
Q 023663 18 VGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSA-----CG-SADVLEAL---------GVVIDLDPEGVRRCVD 82 (279)
Q Consensus 18 ~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~-----~G-s~dvLe~L---------Gi~~~~s~~~~~~~l~ 82 (279)
+-.|..|..| -.+..++++..|++|+-.|+-+--++ .- |+|+.|-- |+..-++.+..-+.|+
T Consensus 102 vA~~~~gaTT---VAaTMi~A~~aGI~vfaTGGiGGVHrGAe~t~DISaDL~ELa~T~v~vV~AGaKsILDi~~TlE~LE 178 (310)
T COG2313 102 VAEGKNGATT---VAATMILAALAGIKVFATGGIGGVHRGAEHTFDISADLTELARTNVTVVCAGAKSILDIGLTLEVLE 178 (310)
T ss_pred HhcCcCCcch---HHHHHHHHHHcCceEEEecCcccccCCcccccccchhHHHHhcCCeEEEecCchhhhccHHHHHHHH
Confidence 4456777664 22334555567999999998662222 11 67776642 4444567777888899
Q ss_pred hcCeEEEeC-CccChhh
Q 023663 83 EAGIGFMMS-TKYHPAM 98 (279)
Q Consensus 83 ~~g~~fl~~-~~~~P~l 98 (279)
..|+-.+.. ..-.|++
T Consensus 179 T~gVPvvg~~t~~fPaF 195 (310)
T COG2313 179 TQGVPVVGYQTNEFPAF 195 (310)
T ss_pred hcCcceeecCCCcccch
Confidence 999876643 3334554
No 32
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=48.17 E-value=23 Score=27.96 Aligned_cols=89 Identities=18% Similarity=0.210 Sum_probs=57.3
Q ss_pred cCCCCCCCHHHHHHHHHhcCeEEEeCCc--cChhhhchHHHHhhhC--CCChhhhhhhccCCCCCCceEEEeeChhhHHH
Q 023663 66 LGVVIDLDPEGVRRCVDEAGIGFMMSTK--YHPAMKFVRPVRKKLK--VKTVFNILGPMLNPACVPFAVVGVYNENLVLK 141 (279)
Q Consensus 66 LGi~~~~s~~~~~~~l~~~g~~fl~~~~--~~P~l~~l~~lR~~lg--~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~ 141 (279)
.|++-+.|-..+.+.|+++|+.|-+-.. =-|.-..|..+=+++| +++++|+-+....=++ .........+..+.
T Consensus 6 y~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g~~~~~li~t~~~~~r~L~--~~~~~~~~~~~~~~ 83 (117)
T COG1393 6 YGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLGDGVEELINTRGTTYRELN--LDKEDLSDEELIEA 83 (117)
T ss_pred EeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcCccHHHHHHhccchHHHcC--CcccccChHHHHHH
Confidence 3667778889999999999999854432 2566677888888888 8999999776655544 22234444444444
Q ss_pred HHHHHHHcCCCeEEEEe
Q 023663 142 MANALQRFGLKRALVVH 158 (279)
Q Consensus 142 ~~~~~~~lG~~~alvv~ 158 (279)
+.+--..+ +|=++|.
T Consensus 84 i~~~~~Li--kRPivv~ 98 (117)
T COG1393 84 LLENPSLI--KRPIVVD 98 (117)
T ss_pred HHhChhhc--cCCeEEe
Confidence 44333333 2345554
No 33
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=47.06 E-value=15 Score=31.53 Aligned_cols=32 Identities=38% Similarity=0.462 Sum_probs=25.9
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEee
Q 023663 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kH 48 (279)
|=+.|-||.||.| ++.-.|-.+|+.|.+|+.-
T Consensus 3 iav~gKGGvGKTt--~~~nLA~~la~~G~rvLli 34 (212)
T cd02117 3 IAIYGKGGIGKST--TSQNLSAALAEMGKKVLQV 34 (212)
T ss_pred EEEECCCcCcHHH--HHHHHHHHHHHCCCcEEEE
Confidence 4467999999997 5667788889999999864
No 34
>PF08844 DUF1815: Domain of unknown function (DUF1815); InterPro: IPR014943 This entry is about 100 amino acids in length and is functionally uncharacterised.
Probab=45.80 E-value=98 Score=23.60 Aligned_cols=50 Identities=26% Similarity=0.391 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCCCeEEEEe-cCCcccccccCceEEEEEeCCeEEEEEeCCCCCCCCC
Q 023663 140 LKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPR 195 (279)
Q Consensus 140 ~~~~~~~~~lG~~~alvv~-GeG~dE~sp~~~t~v~~~~~g~~~~~~i~p~d~gl~~ 195 (279)
.-++..++..|+. +.|.. |||.| -++.+.+..+.++...+|.+ .|||+.=
T Consensus 20 qALa~~Le~rG~~-AsCYtC~dG~~---~~~ASFmv~lg~~HliRFLV--Sd~GIsW 70 (105)
T PF08844_consen 20 QALAIVLERRGYL-ASCYTCGDGRD---MNSASFMVSLGDNHLIRFLV--SDYGISW 70 (105)
T ss_pred HHHHHHHHhCCce-eEEEecCCCCC---CCceeEEEEcCCCcEEEEEE--ecCCeeE
Confidence 3456778888984 55554 57654 35667787888888777776 5888753
No 35
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=44.88 E-value=20 Score=29.46 Aligned_cols=31 Identities=29% Similarity=0.431 Sum_probs=24.9
Q ss_pred eCCCCCCCCCccchHHHHHHHHhCCCcEEeecC
Q 023663 18 VGTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (279)
Q Consensus 18 ~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~ 50 (279)
.+-||.|+.| ++...|..+|+.|.+|+.--.
T Consensus 6 s~kgG~GKTt--~a~~LA~~la~~g~~vllvD~ 36 (169)
T cd02037 6 SGKGGVGKST--VAVNLALALAKLGYKVGLLDA 36 (169)
T ss_pred cCCCcCChhH--HHHHHHHHHHHcCCcEEEEeC
Confidence 4569999997 677788889999999987533
No 36
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=43.94 E-value=46 Score=30.01 Aligned_cols=70 Identities=14% Similarity=0.249 Sum_probs=41.4
Q ss_pred HHHHHhcCeEEEeCCcc------ChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHcCC
Q 023663 78 RRCVDEAGIGFMMSTKY------HPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGL 151 (279)
Q Consensus 78 ~~~l~~~g~~fl~~~~~------~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lG~ 151 (279)
.+.|+..+.-|+....- ...+.-...+++++|++++.|+..+ + .++.-.+.....+..+|.
T Consensus 21 ~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r------------~-~n~~~l~~~L~~~~~~Gi 87 (272)
T TIGR00676 21 VDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCI------------G-ATREEIREILREYRELGI 87 (272)
T ss_pred HHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeec------------C-CCHHHHHHHHHHHHHCCC
Confidence 44566666666655322 1233334566778888888777333 3 233333444445578899
Q ss_pred CeEEEEecC
Q 023663 152 KRALVVHSE 160 (279)
Q Consensus 152 ~~alvv~Ge 160 (279)
++.++++||
T Consensus 88 ~nvL~l~GD 96 (272)
T TIGR00676 88 RHILALRGD 96 (272)
T ss_pred CEEEEeCCC
Confidence 899999883
No 37
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=43.85 E-value=17 Score=32.62 Aligned_cols=32 Identities=28% Similarity=0.302 Sum_probs=26.0
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEee
Q 023663 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kH 48 (279)
+-++|=||.|+.| .+.-.|..||..|.+|+.-
T Consensus 4 i~~~gKGGVGKTT--~a~nLA~~La~~G~rVLli 35 (279)
T PRK13230 4 FCFYGKGGIGKST--TVCNIAAALAESGKKVLVV 35 (279)
T ss_pred EEEECCCCCcHHH--HHHHHHHHHHhCCCEEEEE
Confidence 4577999999996 4566788889999999875
No 38
>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=43.69 E-value=2e+02 Score=26.20 Aligned_cols=53 Identities=28% Similarity=0.286 Sum_probs=38.1
Q ss_pred eCCCCCCCC---CccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCCCC
Q 023663 18 VGTGGDGAN---TVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID 71 (279)
Q Consensus 18 ~gtggdG~~---t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~ 71 (279)
=|+||..+. ||-||-=.- =||+-++-|+--|.+++=----+-++||..|+|+-
T Consensus 130 GGiGGVHrGAe~t~DISaDL~-ELa~T~v~vV~AGaKsILDi~~TlE~LET~gVPvv 185 (310)
T COG2313 130 GGIGGVHRGAEHTFDISADLT-ELARTNVTVVCAGAKSILDIGLTLEVLETQGVPVV 185 (310)
T ss_pred cCcccccCCcccccccchhHH-HHhcCCeEEEecCchhhhccHHHHHHHHhcCccee
Confidence 355555554 888875443 35788889988888776555558899999999875
No 39
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=43.02 E-value=53 Score=29.89 Aligned_cols=70 Identities=11% Similarity=0.069 Sum_probs=44.2
Q ss_pred HHHHHhcCeEEEeCCcc------ChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHcCC
Q 023663 78 RRCVDEAGIGFMMSTKY------HPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGL 151 (279)
Q Consensus 78 ~~~l~~~g~~fl~~~~~------~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lG~ 151 (279)
.+.|.+.+-.|+....- .-.+.....+++++|++++.|+..+=.|. -++.+ ...-+..+|.
T Consensus 22 ~~~l~~~~p~fvsvT~~~~~~~~~~t~~~~~~l~~~~g~~~i~Hltcr~~~~------------~~l~~-~L~~~~~~Gi 88 (281)
T TIGR00677 22 MDRMVASGPLFIDITWGAGGTTAELTLTIASRAQNVVGVETCMHLTCTNMPI------------EMIDD-ALERAYSNGI 88 (281)
T ss_pred HHHHhhCCCCEEEeccCCCCcchhhHHHHHHHHHHhcCCCeeEEeccCCCCH------------HHHHH-HHHHHHHCCC
Confidence 34455666767766432 22466667788899999998874442222 23333 3334478899
Q ss_pred CeEEEEecC
Q 023663 152 KRALVVHSE 160 (279)
Q Consensus 152 ~~alvv~Ge 160 (279)
++.++++||
T Consensus 89 ~niLal~GD 97 (281)
T TIGR00677 89 QNILALRGD 97 (281)
T ss_pred CEEEEECCC
Confidence 999999983
No 40
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=42.40 E-value=2.5e+02 Score=25.10 Aligned_cols=138 Identities=22% Similarity=0.331 Sum_probs=83.3
Q ss_pred CCCCCHHHHHHHHHhcCeEEEeC-CccChhhhchHHHHhhhCCC---Chhhhhh--hccCCCCCCceEEEeeChhhHHHH
Q 023663 69 VIDLDPEGVRRCVDEAGIGFMMS-TKYHPAMKFVRPVRKKLKVK---TVFNILG--PMLNPACVPFAVVGVYNENLVLKM 142 (279)
Q Consensus 69 ~~~~s~~~~~~~l~~~g~~fl~~-~~~~P~l~~l~~lR~~lg~R---t~~n~l~--~LlNP~~~~~~v~Gv~h~~~~~~~ 142 (279)
-++.+-+++.+...+.|+--+.. +++...-.++...=+.+++. .++|.=| |++.| +.....
T Consensus 47 vVATDde~I~~av~~~G~~avmT~~~h~SGTdR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p-------------~~I~~~ 113 (247)
T COG1212 47 VVATDDERIAEAVQAFGGEAVMTSKDHQSGTDRLAEVVEKLGLPDDEIIVNVQGDEPFIEP-------------EVIRAV 113 (247)
T ss_pred EEEcCCHHHHHHHHHhCCEEEecCCCCCCccHHHHHHHHhcCCCcceEEEEccCCCCCCCH-------------HHHHHH
Confidence 45677888999999887766665 55556688999998999988 6777765 77777 677777
Q ss_pred HHHHHHcCCC-eEEEEecCCcccccccCceEEEEE--eCCeEEEEEeCCCCCCCCCC---C-----------------CC
Q 023663 143 ANALQRFGLK-RALVVHSEGLDEMSPLGPGLILDV--TQEKIERFSFDPLDYGIPRC---T-----------------LE 199 (279)
Q Consensus 143 ~~~~~~lG~~-~alvv~GeG~dE~sp~~~t~v~~~--~~g~~~~~~i~p~d~gl~~~---~-----------------~~ 199 (279)
++.++.-..+ ..++++=...+|. ..++.|-.+ .+|..-.|+-.|-.|+-+.. + +-
T Consensus 114 ~~~L~~~~~~~aTl~~~i~~~ee~--~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~ 191 (247)
T COG1212 114 AENLENSNADMATLAVKITDEEEA--FNPNVVKVVLDKEGYALYFSRAPIPYGRDNFGGTPFLRHIGIYAYRAGFLERFV 191 (247)
T ss_pred HHHHHhCCcceeeeeeecCCHHHh--cCCCcEEEEEcCCCcEEEEEcCCCCCcccccCCcchhheeehHHhHHHHHHHHH
Confidence 7777755333 2244433233333 223333333 33455556655555553310 0 01
Q ss_pred CcCC--CChHHHHHHHHHHhCCCC
Q 023663 200 SLQG--GGPAYNAEVLRRVLSGER 221 (279)
Q Consensus 200 ~~~~--~~~~~~a~~~~~vL~G~~ 221 (279)
.++. ..-.+..|.++.+|+|.+
T Consensus 192 ~~~ps~LE~~E~LEQLR~Le~G~k 215 (247)
T COG1212 192 ALKPSPLEKIESLEQLRVLENGEK 215 (247)
T ss_pred hcCCchhHHHHHHHHHHHHHcCCe
Confidence 1211 134456788889999975
No 41
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=42.16 E-value=65 Score=29.60 Aligned_cols=76 Identities=14% Similarity=0.160 Sum_probs=50.3
Q ss_pred HHHHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHH--HhcCeEEEeCCccChh--hhchHHHHhhhC
Q 023663 34 ASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCV--DEAGIGFMMSTKYHPA--MKFVRPVRKKLK 109 (279)
Q Consensus 34 aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~s~~~~~~~l--~~~g~~fl~~~~~~P~--l~~l~~lR~~lg 109 (279)
.+--.++.|+.|+++|.++++-..|+.--+..=|+.+..+++++++.- ....++|+.+-.++.. ..-+..+|.++.
T Consensus 106 ~v~~~~~~G~~iIliG~~gHpEv~Gt~Gq~~~~~~~lve~~~d~~~l~~~~~~~l~~~tQTTls~ddt~~Iv~~l~~r~p 185 (294)
T COG0761 106 EVERYAREGYEIILIGHKGHPEVIGTMGQYPEGGVLLVESVEDVANLKVQLPDKLAFVTQTTLSVDDTAEIVAALKERFP 185 (294)
T ss_pred HHHHHHhCCCEEEEEccCCCCceeeeccccCCCceEEEecHHHHHhcccCCcccEEEEeeeecCHHHHHHHHHHHHHhCc
Confidence 344568899999999999998765542211111677778899888874 3448999999777654 223344454443
No 42
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=42.04 E-value=1.1e+02 Score=27.28 Aligned_cols=80 Identities=13% Similarity=0.209 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHhcCeEEEeCCccC----hhhhch---HHHHhhh--------CCCChhhhhhhccCCCCCCceEEEeeCh
Q 023663 72 LDPEGVRRCVDEAGIGFMMSTKYH----PAMKFV---RPVRKKL--------KVKTVFNILGPMLNPACVPFAVVGVYNE 136 (279)
Q Consensus 72 ~s~~~~~~~l~~~g~~fl~~~~~~----P~l~~l---~~lR~~l--------g~Rt~~n~l~~LlNP~~~~~~v~Gv~h~ 136 (279)
-+|.+.++.+.+.|+-+++.=++. +.-..+ ..+.+.+ |+|| .+.++.|+. ++..+.++|-+--
T Consensus 31 ~~P~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~~~~~~vQvGGGIRs-~~~v~~ll~-~G~~rViiGt~av 108 (241)
T COG0106 31 DDPLEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILEATDVPVQVGGGIRS-LEDVEALLD-AGVARVIIGTAAV 108 (241)
T ss_pred CCHHHHHHHHHHcCCcEEEEeeccccccCCcccHHHHHHHHHhCCCCEEeeCCcCC-HHHHHHHHH-CCCCEEEEeccee
Confidence 478888899999999999873332 222332 2333333 6776 488899999 7888888886655
Q ss_pred hhHHHHHHHHHHcCCCeE
Q 023663 137 NLVLKMANALQRFGLKRA 154 (279)
Q Consensus 137 ~~~~~~~~~~~~lG~~~a 154 (279)
+=.+.+.++++.-| ++.
T Consensus 109 ~~p~~v~~~~~~~g-~ri 125 (241)
T COG0106 109 KNPDLVKELCEEYG-DRI 125 (241)
T ss_pred cCHHHHHHHHHHcC-CcE
Confidence 55666788888888 553
No 43
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=41.92 E-value=1.5e+02 Score=28.95 Aligned_cols=136 Identities=13% Similarity=0.186 Sum_probs=72.3
Q ss_pred CcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHH----HHcCCCCCC--CHHHHHHHHHhc--
Q 023663 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVL----EALGVVIDL--DPEGVRRCVDEA-- 84 (279)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvL----e~LGi~~~~--s~~~~~~~l~~~-- 84 (279)
.++=++|.+|.|+.|.=...++. .....|.+|..-..+. .+.++.+.| +.+|+++.. +..++.+.+++.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~-~~~~~G~~V~Lit~Dt--~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~ 300 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAK-YFLHMGKSVSLYTTDN--YRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGS 300 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHHhcCCeEEEecccc--hhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCC
Confidence 34668999999997422222221 1235688888766543 444544433 566887642 245566666544
Q ss_pred CeEEEeCCccChh-hhchHHHHhhhCCCChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHcCCCeEEEEe
Q 023663 85 GIGFMMSTKYHPA-MKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (279)
Q Consensus 85 g~~fl~~~~~~P~-l~~l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lG~~~alvv~ 158 (279)
.+.++..+-+.|. ...+-.+++.+. .+++ .+|...-..+-+-++..-.....+.++.+|+++.++-|
T Consensus 301 D~VLIDTaGr~~rd~~~l~eL~~~~~------~~~~-~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTK 368 (432)
T PRK12724 301 ELILIDTAGYSHRNLEQLERMQSFYS------CFGE-KDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTK 368 (432)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHH------hhcC-CCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEc
Confidence 4566676666543 223333333221 1111 01221222233455555667777778888997666665
No 44
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=41.59 E-value=18 Score=32.06 Aligned_cols=31 Identities=35% Similarity=0.470 Sum_probs=25.1
Q ss_pred eeeCCCCCCCCCccchHHHHHHHHhCCCcEEee
Q 023663 16 DIVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (279)
Q Consensus 16 D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kH 48 (279)
=+.|-||.||.| +++-.|-.||..|.+|+.-
T Consensus 4 ~v~gKGGvGKTT--~a~nLA~~la~~G~rvlli 34 (267)
T cd02032 4 AVYGKGGIGKST--TSSNLSVALAKRGKKVLQI 34 (267)
T ss_pred EEecCCCCCHHH--HHHHHHHHHHHCCCcEEEE
Confidence 356899999997 5666778889999999853
No 45
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=41.34 E-value=19 Score=32.41 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=26.7
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEeecC
Q 023663 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~ 50 (279)
+.|.||+|+.| ++.-.|..+|+.|.+|..-=.
T Consensus 63 ~S~kgGvGKSt--va~nLA~alA~~G~rVlliDa 94 (265)
T COG0489 63 TSGKGGVGKST--VAVNLAAALAQLGKRVLLLDA 94 (265)
T ss_pred EeCCCCCcHHH--HHHHHHHHHHhcCCcEEEEeC
Confidence 56889999997 678889999999999986443
No 46
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=39.93 E-value=20 Score=31.96 Aligned_cols=31 Identities=32% Similarity=0.445 Sum_probs=25.6
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEe
Q 023663 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAK 47 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~k 47 (279)
|=+.|=||.|+.| ++.-.|..||+.|.+|+.
T Consensus 3 ia~~gKGGVGKTT--~a~nLA~~La~~G~~Vll 33 (275)
T TIGR01287 3 IAIYGKGGIGKST--TTQNIAAALAEMGKKVMI 33 (275)
T ss_pred eEEeCCCcCcHHH--HHHHHHHHHHHCCCeEEE
Confidence 3467999999997 577788888999999986
No 47
>PF11501 Nsp1: Non structural protein Nsp1; InterPro: IPR021590 Nsp1 is the N-terminal cleavage product from the viral replicase that mediates RNA replication and processing []. The specific function of the protein is unknown however the structure has been determined. The protein has a novel alpha/beta fold formed by a 6 stranded beta barrel with an alpha helix covering one end of the barrel and another helix alongside the barrel []. Nsp1 could be involved in the degradation of mRNA. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity, 0016788 hydrolase activity, acting on ester bonds, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2HSX_A 2GDT_A.
Probab=39.61 E-value=27 Score=26.68 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=17.0
Q ss_pred cccCCCHHHHHHHHHHHHHccH
Q 023663 239 SCKVNTLAEGVALAREIQLSGK 260 (279)
Q Consensus 239 ~g~~~~~~eg~~~A~~~l~sG~ 260 (279)
.|-.++.|+|++.|++++..|+
T Consensus 17 rgfgd~vE~Al~eAR~hL~eGt 38 (115)
T PF11501_consen 17 RGFGDSVEEALEEARVHLAEGT 38 (115)
T ss_dssp --S-SSHHHHHHHHHHHHHHT-
T ss_pred hccchHHHHHHHHHHHHHhcCc
Confidence 4566899999999999999997
No 48
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=39.53 E-value=1.1e+02 Score=25.69 Aligned_cols=88 Identities=20% Similarity=0.178 Sum_probs=58.5
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCC-----CCCccc--HHHHHHHcCC-CCCCCHHHHHHHHHhc----
Q 023663 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRS-----SSSACG--SADVLEALGV-VIDLDPEGVRRCVDEA---- 84 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~-----~~~~~G--s~dvLe~LGi-~~~~s~~~~~~~l~~~---- 84 (279)
+.|++|.|+. |.|..+.+..|++=+--|+-- .....| ...+++.=.+ +=......+...+++.
T Consensus 5 ilG~pGaGK~-----T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~ 79 (178)
T COG0563 5 ILGPPGAGKS-----TLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKA 79 (178)
T ss_pred EECCCCCCHH-----HHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccC
Confidence 6899999985 688888888888777655422 223334 3445555553 2224445666667665
Q ss_pred CeEEEeCCccChhhhchHHHHhhhC
Q 023663 85 GIGFMMSTKYHPAMKFVRPVRKKLK 109 (279)
Q Consensus 85 g~~fl~~~~~~P~l~~l~~lR~~lg 109 (279)
||-|..-|...+....+-..-+++|
T Consensus 80 ~~I~dg~PR~~~qa~~l~r~l~~~g 104 (178)
T COG0563 80 GFILDGFPRTLCQARALKRLLKELG 104 (178)
T ss_pred eEEEeCCCCcHHHHHHHHHHHHHcC
Confidence 7888888999888877776666666
No 49
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=39.53 E-value=24 Score=24.93 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=23.9
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEeec
Q 023663 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQG 49 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG 49 (279)
++|.+|.|+.| ++...+..+++.|.+|..-.
T Consensus 4 ~~g~~G~Gktt--~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 4 VTGKGGVGKTT--LAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EECCCCCCHHH--HHHHHHHHHHHCCCeEEEEC
Confidence 57888888886 56667777788899988655
No 50
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=39.33 E-value=46 Score=25.31 Aligned_cols=30 Identities=20% Similarity=0.219 Sum_probs=23.9
Q ss_pred eChhhHHHHHHHHHHcCCCeEEEEec-CCcc
Q 023663 134 YNENLVLKMANALQRFGLKRALVVHS-EGLD 163 (279)
Q Consensus 134 ~h~~~~~~~~~~~~~lG~~~alvv~G-eG~d 163 (279)
.++++.+.+.+.++..|...+.|++| +|+-
T Consensus 17 ~g~~l~~~ll~~~~~~gi~GaTV~rgi~G~G 47 (101)
T PF02641_consen 17 GGKPLYEWLLERAREAGIAGATVFRGIEGFG 47 (101)
T ss_dssp TTEEHHHHHHHHHHHTT-SEEEEEE-SEEEE
T ss_pred CceEHHHHHHHHHHHCCCCeEEEEcceeeeC
Confidence 46788888899999999999999999 7753
No 51
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=39.30 E-value=21 Score=31.43 Aligned_cols=31 Identities=35% Similarity=0.453 Sum_probs=24.9
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEe
Q 023663 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAK 47 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~k 47 (279)
|=++|-||.|+.| ++.-.|..||..|.+|+.
T Consensus 4 iav~~KGGvGKTT--~~~nLA~~La~~G~kVll 34 (270)
T cd02040 4 IAIYGKGGIGKST--TTQNLSAALAEMGKKVMI 34 (270)
T ss_pred EEEEeCCcCCHHH--HHHHHHHHHHhCCCeEEE
Confidence 4456889999997 466677888899999995
No 52
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=37.83 E-value=26 Score=29.87 Aligned_cols=26 Identities=38% Similarity=0.465 Sum_probs=18.9
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEE
Q 023663 15 VDIVGTGGDGANTVNISTGASILAAACGAKVA 46 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~ 46 (279)
|-|+||||.|+.| ++-.|+..|+++.
T Consensus 3 I~ITGTPGvGKTT------~~~~L~~lg~~~i 28 (180)
T COG1936 3 IAITGTPGVGKTT------VCKLLRELGYKVI 28 (180)
T ss_pred EEEeCCCCCchHH------HHHHHHHhCCcee
Confidence 5688999999864 3444458888876
No 53
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=37.67 E-value=24 Score=31.55 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=25.5
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEee
Q 023663 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kH 48 (279)
|=++|=||.||.| ++.-.|..||..|.+|+.-
T Consensus 4 iav~gKGGVGKTT--~a~nLA~~La~~G~rVllv 35 (273)
T PRK13232 4 IAIYGKGGIGKST--TTQNLTAALSTMGNKILLV 35 (273)
T ss_pred EEEECCCCCcHHH--HHHHHHHHHHhhCCCeEEE
Confidence 3456889999996 4666777889999999875
No 54
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=36.30 E-value=89 Score=27.98 Aligned_cols=73 Identities=8% Similarity=0.094 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCeEEEeCCcc------ChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHH
Q 023663 75 EGVRRCVDEAGIGFMMSTKY------HPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQR 148 (279)
Q Consensus 75 ~~~~~~l~~~g~~fl~~~~~------~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~ 148 (279)
+++.+.+...+..|+..+.. ...+.....++++.|++++.|+..+=.|. -+ .+.....+..
T Consensus 18 ~~~~~~~~~~~~d~v~Vt~~~~g~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~------------~~-l~~~L~~~~~ 84 (274)
T cd00537 18 EAAADLLGALDPDFVSVTDGAGGSTRDMTLLAAARILQEGGIEPIPHLTCRDRNR------------IE-LQSILLGAHA 84 (274)
T ss_pred HHHHHHhhcCCCCEEEeCCCCCCchhhhHHHHHHHHHHhcCCCeeeecccCCCCH------------HH-HHHHHHHHHH
Confidence 34555555544555544332 22344456677788888888874443332 23 3334444577
Q ss_pred cCCCeEEEEecC
Q 023663 149 FGLKRALVVHSE 160 (279)
Q Consensus 149 lG~~~alvv~Ge 160 (279)
+|.++.++++||
T Consensus 85 ~Gi~~iL~l~GD 96 (274)
T cd00537 85 LGIRNILALRGD 96 (274)
T ss_pred CCCCeEEEeCCC
Confidence 899999999983
No 55
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=36.16 E-value=45 Score=30.02 Aligned_cols=61 Identities=36% Similarity=0.441 Sum_probs=39.6
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCC-CCC-c--cc------HHHHHHHcCCCCCCCHHHH
Q 023663 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRS-SSS-A--CG------SADVLEALGVVIDLDPEGV 77 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~-~~~-~--~G------s~dvLe~LGi~~~~s~~~~ 77 (279)
|-+.|-||-|++| +|.=.+..+|..|.+|+.+|=+. ..| + .| .-|.|...|--.+..++++
T Consensus 4 iAiYGKGGIGKST--ts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledv 74 (278)
T COG1348 4 IAIYGKGGIGKST--TSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDV 74 (278)
T ss_pred EEEecCCCcCcch--hHHHHHHHHHHcCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHh
Confidence 4578999999996 34445556788899999999754 112 1 12 4677777664334445543
No 56
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=36.12 E-value=43 Score=30.69 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=25.4
Q ss_pred eCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCC
Q 023663 18 VGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSS 54 (279)
Q Consensus 18 ~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~ 54 (279)
+| -|.+...+++-.+..+ -...++|.++||+.+.+
T Consensus 180 HG-~y~~~p~Ld~~~L~~I-~~~~~iPLVlHGgSG~~ 214 (284)
T PRK12737 180 HG-LYKGEPKLDFERLAEI-REKVSIPLVLHGASGVP 214 (284)
T ss_pred cc-ccCCCCcCCHHHHHHH-HHHhCCCEEEeCCCCCC
Confidence 44 6766557777777666 45668999999997743
No 57
>PRK04531 acetylglutamate kinase; Provisional
Probab=35.96 E-value=1.2e+02 Score=29.08 Aligned_cols=98 Identities=12% Similarity=0.218 Sum_probs=53.0
Q ss_pred HHhCCC-cEEeecCCCCCCcccHHHHHHHcCCCCC------CCHHHH----HHHHHhcCeEEEeCCccChhhhchHH-HH
Q 023663 38 AAACGA-KVAKQGSRSSSSACGSADVLEALGVVID------LDPEGV----RRCVDEAGIGFMMSTKYHPAMKFVRP-VR 105 (279)
Q Consensus 38 lA~~G~-~V~kHG~~~~~~~~Gs~dvLe~LGi~~~------~s~~~~----~~~l~~~g~~fl~~~~~~P~l~~l~~-lR 105 (279)
|.+.|+ +|+.||++. -....|+.+|++.. .|.+++ ...+.+.+. .|.. +|
T Consensus 62 L~~~G~~~VlVHGggp-----qI~~~l~~~gie~~~v~G~RVTd~~tl~vv~~~l~~vn~-------------~lv~~I~ 123 (398)
T PRK04531 62 LQEVGLTPIVVHGAGP-----QLDAELDAAGIEKETVNGLRVTSPEALAIVRKVFQRSNL-------------DLVEAVE 123 (398)
T ss_pred HHHCCCcEEEEECCCH-----HHHHHHHHcCCCcEEECCEecCCHHHHHHHHHHHHHHHH-------------HHHHHHH
Confidence 456676 788999954 24678888888643 122222 222222111 1111 44
Q ss_pred hhhCCCChhhhhhhccCCCC--CCceEEEeeChhhHHHHHHHHHHcCCCeEEEEec-CC
Q 023663 106 KKLKVKTVFNILGPMLNPAC--VPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EG 161 (279)
Q Consensus 106 ~~lg~Rt~~n~l~~LlNP~~--~~~~v~Gv~h~~~~~~~~~~~~~lG~~~alvv~G-eG 161 (279)
+.|.-.-+ |++.|.. +.-+ ++.=.-.....+++..++.++.+++.. +|
T Consensus 124 ~~L~~g~I-----PVlsplg~~~~G~---~~NvnaD~vA~~LA~aL~a~KLIfltdv~G 174 (398)
T PRK04531 124 SSLRAGSI-----PVIASLGETPSGQ---ILNINADVAANELVSALQPYKIIFLTGTGG 174 (398)
T ss_pred HHHHCCCE-----EEEeCcEECCCCc---EEEECHHHHHHHHHHHcCCCEEEEEECCCC
Confidence 44432222 7787764 2222 233344566677778888877777765 55
No 58
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=35.26 E-value=23 Score=32.23 Aligned_cols=36 Identities=33% Similarity=0.474 Sum_probs=27.7
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCC
Q 023663 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRS 52 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~ 52 (279)
|=+.|-||-|++| ++.=.+..+|..|.+|+..|-+.
T Consensus 3 IAiYGKGGIGKST--~~~Nlsaala~~G~kVl~iGCDP 38 (273)
T PF00142_consen 3 IAIYGKGGIGKST--TASNLSAALAEMGKKVLQIGCDP 38 (273)
T ss_dssp EEEEESTTSSHHH--HHHHHHHHHHHTT--EEEEEESS
T ss_pred EEEEcCCCcccCh--hhhHHHHHHHhccceeeEecccC
Confidence 4478999999996 56667778899999999999755
No 59
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=35.24 E-value=2.2e+02 Score=27.57 Aligned_cols=83 Identities=12% Similarity=0.142 Sum_probs=53.8
Q ss_pred CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHH----cCCCC--CCCHHHHHHHHHh--
Q 023663 12 GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEA----LGVVI--DLDPEGVRRCVDE-- 83 (279)
Q Consensus 12 ~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~----LGi~~--~~s~~~~~~~l~~-- 83 (279)
..++=++|..|.|+.|.-.- .|..+...|.+|..--.+ +.+.|+.+-|.. +|+++ ..++++..+.++.
T Consensus 206 ~~ii~lvGptGvGKTTt~ak--LA~~l~~~g~~V~lItaD--tyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVK--LGWQLLKQNRTVGFITTD--TFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred CeEEEEECCCCCCHHHHHHH--HHHHHHHcCCeEEEEeCC--ccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 45677899999998842111 222344568888875543 557776555554 68765 3678888776653
Q ss_pred ----cCeEEEeCCccChhh
Q 023663 84 ----AGIGFMMSTKYHPAM 98 (279)
Q Consensus 84 ----~g~~fl~~~~~~P~l 98 (279)
.-+.++..+-.+|..
T Consensus 282 ~~~~~D~VLIDTAGr~~~d 300 (407)
T PRK12726 282 YVNCVDHILIDTVGRNYLA 300 (407)
T ss_pred hcCCCCEEEEECCCCCccC
Confidence 467888888777644
No 60
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=35.23 E-value=1.2e+02 Score=26.87 Aligned_cols=118 Identities=14% Similarity=0.250 Sum_probs=78.4
Q ss_pred CCCCCHHHHHHHHHhcCeEEEeC---C-ccChhhhchHHHHhhhCCCCh-------------hhhhhhccCCCCCCceEE
Q 023663 69 VIDLDPEGVRRCVDEAGIGFMMS---T-KYHPAMKFVRPVRKKLKVKTV-------------FNILGPMLNPACVPFAVV 131 (279)
Q Consensus 69 ~~~~s~~~~~~~l~~~g~~fl~~---~-~~~P~l~~l~~lR~~lg~Rt~-------------~n~l~~LlNP~~~~~~v~ 131 (279)
..+.++.+.+...++.|-+.+.. | -|+-.+..|..+|+..|+.-+ -.+.+-=++-+++-..+.
T Consensus 88 k~d~~~ae~A~~Yak~GAs~iSVLTe~k~FkGsledL~~irk~~~~k~p~~~lL~KeFivd~~QI~~aR~~GADaVLLIv 167 (289)
T KOG4201|consen 88 KLDANAAEQALAYAKGGASCISVLTEPKWFKGSLEDLVAIRKIAGVKCPPKCLLRKEFIVDPYQIYEARLKGADAVLLIV 167 (289)
T ss_pred ccccCHHHHHHHHHhcCceeeeeecCchhhcccHHHHHHHHHHhcCcCChHhHhHHHHccCHHHHHHHHhcCCceeehHH
Confidence 45567778888889999888866 4 455669999999999887644 233333445555556667
Q ss_pred EeeChhhHHHHHHHHHHcCCCeEEEEec-CCcccccccCceEEEEEeCCeEEEEEeC
Q 023663 132 GVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFD 187 (279)
Q Consensus 132 Gv~h~~~~~~~~~~~~~lG~~~alvv~G-eG~dE~sp~~~t~v~~~~~g~~~~~~i~ 187 (279)
.+-+......+-...+.+|.+.-+=|+. +-++-+--. -.++..++|-...+|.++
T Consensus 168 amLs~~~lk~l~k~~K~L~me~LVEVn~~eEm~ralei-GakvvGvNNRnL~sFeVD 223 (289)
T KOG4201|consen 168 AMLSDLLLKELYKISKDLGMEPLVEVNDEEEMQRALEI-GAKVVGVNNRNLHSFEVD 223 (289)
T ss_pred HHcChHHHHHHHHHHHHcCCcceeeeccHHHHHHHHHh-CcEEEeecCCccceeeec
Confidence 7788888888899999999965555655 333311111 235556666556666653
No 61
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=35.03 E-value=29 Score=31.73 Aligned_cols=36 Identities=31% Similarity=0.510 Sum_probs=28.7
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCC
Q 023663 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRS 52 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~ 52 (279)
|=++|-||.|+.| ++.-.|..+|..|.+|+.-..+.
T Consensus 3 Iav~gKGGvGKTT--~a~nLA~~La~~g~rVLlID~Dp 38 (296)
T TIGR02016 3 IAIYGKGGSGKSF--TTTNLSHMMAEMGKRVLQLGCDP 38 (296)
T ss_pred EEEECCCCCCHHH--HHHHHHHHHHHCCCeEEEEEecC
Confidence 3456899999997 57778888899999999866543
No 62
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=34.52 E-value=26 Score=28.84 Aligned_cols=29 Identities=34% Similarity=0.386 Sum_probs=22.2
Q ss_pred eCCCCCCCCCccchHHHHHHHHhCCCcEEee
Q 023663 18 VGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (279)
Q Consensus 18 ~gtggdG~~t~nis~~aA~vlA~~G~~V~kH 48 (279)
.+-||.|+.| ++...|..+|..|.+|+.-
T Consensus 5 ~~kGG~GKTt--~a~~la~~la~~g~~Vlli 33 (195)
T PF01656_consen 5 SGKGGVGKTT--IAANLAQALARKGKKVLLI 33 (195)
T ss_dssp ESSTTSSHHH--HHHHHHHHHHHTTS-EEEE
T ss_pred cCCCCccHHH--HHHHHHhcccccccccccc
Confidence 3558889886 5777888888999999964
No 63
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=34.46 E-value=28 Score=30.90 Aligned_cols=75 Identities=24% Similarity=0.280 Sum_probs=42.0
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEee-----cCCCC--C--CcccHHHHHHHcCC-CCCCCHHHHHHHHHhc
Q 023663 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQ-----GSRSS--S--SACGSADVLEALGV-VIDLDPEGVRRCVDEA 84 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kH-----G~~~~--~--~~~Gs~dvLe~LGi-~~~~s~~~~~~~l~~~ 84 (279)
|=+++-||.|+.| ++.-.|-.||..|.+|+.- |+-.. . ...+..|+|..... .-..+++++... ...
T Consensus 5 Iav~~KGGVGKTT--~~~nLA~~la~~G~kVLliD~Dpq~~~t~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~-~~~ 81 (270)
T PRK13185 5 LAVYGKGGIGKST--TSSNLSAAFAKLGKKVLQIGCDPKHDSTFTLTGKLVPTVIDILEEVDFHSEELRPEDFVYE-GYN 81 (270)
T ss_pred EEEECCCCCCHHH--HHHHHHHHHHHCCCeEEEEeccCCcchhhhhcCCCCCcHHHHHHhccccccCCCHHHheee-CCC
Confidence 4456889999997 4666777888999999864 33221 1 12344566643211 112334443211 125
Q ss_pred CeEEEeCC
Q 023663 85 GIGFMMST 92 (279)
Q Consensus 85 g~~fl~~~ 92 (279)
|+-++++.
T Consensus 82 ~l~~ip~~ 89 (270)
T PRK13185 82 GVDCVEAG 89 (270)
T ss_pred CcEEEECC
Confidence 78888663
No 64
>PRK13236 nitrogenase reductase; Reviewed
Probab=33.89 E-value=31 Score=31.44 Aligned_cols=76 Identities=21% Similarity=0.258 Sum_probs=44.8
Q ss_pred cceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCC----------CcccHHHHHHHcCCCCCCCHHHHHHHHHh
Q 023663 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSS----------SACGSADVLEALGVVIDLDPEGVRRCVDE 83 (279)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~----------~~~Gs~dvLe~LGi~~~~s~~~~~~~l~~ 83 (279)
++-+.|=||.|+.| ++.-.|..||..|.+|+.-..+... ++....|++..-+.--..+.+++-. -..
T Consensus 8 ~~~~~GKGGVGKTt--~a~NLA~~La~~G~rVLliD~D~q~~~~~~l~~~~~~~tl~d~~~~~~~~~~~~l~~~i~-~~~ 84 (296)
T PRK13236 8 QIAFYGKGGIGKST--TSQNTLAAMAEMGQRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELHEVML-TGF 84 (296)
T ss_pred EEEEECCCcCCHHH--HHHHHHHHHHHCCCcEEEEEccCCCCccchhccCCCCCCHHHHHHhcCCccCCCHHHhhe-eCC
Confidence 45568999999996 4666777789999999975332211 1223455554322111234555432 113
Q ss_pred cCeEEEeCC
Q 023663 84 AGIGFMMST 92 (279)
Q Consensus 84 ~g~~fl~~~ 92 (279)
.|+-++++.
T Consensus 85 ~gv~llpa~ 93 (296)
T PRK13236 85 RGVKCVESG 93 (296)
T ss_pred CCeEEEECC
Confidence 588888864
No 65
>PLN02645 phosphoglycolate phosphatase
Probab=33.87 E-value=69 Score=29.36 Aligned_cols=72 Identities=14% Similarity=0.105 Sum_probs=48.3
Q ss_pred cceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCCCCC-----CHHHHHHHHHhcC
Q 023663 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDL-----DPEGVRRCVDEAG 85 (279)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~-----s~~~~~~~l~~~g 85 (279)
++|+-||=++|...++=..-+--.+-..|++++.--|++..+..-..+-|+.+|+++.. +...+...|++.+
T Consensus 32 ~~D~DGtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~ts~~~~~~~l~~~~ 108 (311)
T PLN02645 32 IFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSSSFAAAAYLKSIN 108 (311)
T ss_pred EEeCcCCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEeehHHHHHHHHHhhc
Confidence 58999998888775544433333567789999988888865555556777899997642 2234455666543
No 66
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=33.56 E-value=4.3e+02 Score=25.20 Aligned_cols=90 Identities=23% Similarity=0.238 Sum_probs=55.7
Q ss_pred CCcceeeCCCCCCCCCccchHHHHHHHH----hCC-CcEEeecCCCCCCcccHHHHHH----HcCCCCC--C---CHHHH
Q 023663 12 GDAVDIVGTGGDGANTVNISTGASILAA----ACG-AKVAKQGSRSSSSACGSADVLE----ALGVVID--L---DPEGV 77 (279)
Q Consensus 12 ~~~~D~~gtggdG~~t~nis~~aA~vlA----~~G-~~V~kHG~~~~~~~~Gs~dvLe----~LGi~~~--~---s~~~~ 77 (279)
..++=++|..|.||.| +++.+++ ..| .+|..-..+ +.+.|..+-|. .+|+++. . +...+
T Consensus 137 g~ii~lvGptGvGKTT-----tiakLA~~~~~~~G~~~V~lit~D--~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~ 209 (374)
T PRK14722 137 GGVFALMGPTGVGKTT-----TTAKLAARCVMRFGASKVALLTTD--SYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLA 209 (374)
T ss_pred CcEEEEECCCCCCHHH-----HHHHHHHHHHHhcCCCeEEEEecc--cccccHHHHHHHHHHHcCCceEecCCcccHHHH
Confidence 3456689999999863 2333322 335 466555433 34566655554 5688764 2 33445
Q ss_pred HHHHHhcCeEEEeCCccChhhhchHHHHhhh
Q 023663 78 RRCVDEAGIGFMMSTKYHPAMKFVRPVRKKL 108 (279)
Q Consensus 78 ~~~l~~~g~~fl~~~~~~P~l~~l~~lR~~l 108 (279)
.+.+.+.-+.++..+-+.|.-..+......+
T Consensus 210 l~~l~~~DlVLIDTaG~~~~d~~l~e~La~L 240 (374)
T PRK14722 210 LAELRNKHMVLIDTIGMSQRDRTVSDQIAML 240 (374)
T ss_pred HHHhcCCCEEEEcCCCCCcccHHHHHHHHHH
Confidence 5666788899999999888766665555444
No 67
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=33.50 E-value=51 Score=30.17 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=25.7
Q ss_pred eCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCC
Q 023663 18 VGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSS 54 (279)
Q Consensus 18 ~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~ 54 (279)
+| -|.|...+++-.+-.+- +..++|.++||+.+.+
T Consensus 180 HG-~y~~~p~Ld~~~L~~i~-~~~~vPLVlHGgSG~~ 214 (284)
T PRK12857 180 HG-PYKGEPKLDFDRLAKIK-ELVNIPIVLHGSSGVP 214 (284)
T ss_pred cc-ccCCCCcCCHHHHHHHH-HHhCCCEEEeCCCCCC
Confidence 44 67665578888777664 5568999999997654
No 68
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=33.29 E-value=89 Score=29.26 Aligned_cols=79 Identities=20% Similarity=0.232 Sum_probs=48.4
Q ss_pred CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHH-----HHHHHcCCC----------------C
Q 023663 12 GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSA-----DVLEALGVV----------------I 70 (279)
Q Consensus 12 ~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~-----dvLe~LGi~----------------~ 70 (279)
..+|-++|++|.|+.|+ .-.....+...|.+|..-..+-.++..|.+ .-++.++-. +
T Consensus 56 ~~~igi~G~~GaGKSTl--~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~ 133 (332)
T PRK09435 56 ALRIGITGVPGVGKSTF--IEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGV 133 (332)
T ss_pred cEEEEEECCCCCCHHHH--HHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccch
Confidence 45789999999999863 222333445679999988888766654422 234544221 1
Q ss_pred CCCHHHHHHHHHhcCeEEEeCC
Q 023663 71 DLDPEGVRRCVDEAGIGFMMST 92 (279)
Q Consensus 71 ~~s~~~~~~~l~~~g~~fl~~~ 92 (279)
+....++.+.++..||-|+..+
T Consensus 134 a~~~~~~~~~~~~~g~d~viie 155 (332)
T PRK09435 134 ARKTRETMLLCEAAGYDVILVE 155 (332)
T ss_pred HHHHHHHHHHHhccCCCEEEEE
Confidence 1223556666777777666654
No 69
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=33.22 E-value=3.7e+02 Score=25.72 Aligned_cols=134 Identities=12% Similarity=0.117 Sum_probs=69.7
Q ss_pred CcceeeCCCCCCCCCccchHHHHHHHH--hCCCcEEeecCCCCCCcccHHHHHHH----cCCCCC--CCHHHHHHH---H
Q 023663 13 DAVDIVGTGGDGANTVNISTGASILAA--ACGAKVAKQGSRSSSSACGSADVLEA----LGVVID--LDPEGVRRC---V 81 (279)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aA~vlA--~~G~~V~kHG~~~~~~~~Gs~dvLe~----LGi~~~--~s~~~~~~~---l 81 (279)
.++=++|..|.|+.|.-...++.+.+. ..|.+|..-..+ +.+.++.+-|.. +|+|+. .++++..+. +
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D--t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID--NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc--CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 456689999999874222222222222 247788765444 346665444444 688765 455555554 3
Q ss_pred HhcCeEEEeCCccChhh-hchHHHHhhhCCCChhhhhhhccCCCCCCceEEEeeC-hhhHHHHHHHHHHcCCCeEEEEe
Q 023663 82 DEAGIGFMMSTKYHPAM-KFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYN-ENLVLKMANALQRFGLKRALVVH 158 (279)
Q Consensus 82 ~~~g~~fl~~~~~~P~l-~~l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h-~~~~~~~~~~~~~lG~~~alvv~ 158 (279)
...-+.++..+-.+|.. ..+..+++.+. .+. .|. -.+.|+.... ..-+..+...+..+|.++.++-|
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~------~~~---~~~-e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TK 321 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLN------ACG---RDA-EFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTK 321 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHH------hcC---CCC-eEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEe
Confidence 56678888888777732 12333333322 111 121 2344444433 33333344444557776666555
No 70
>PF14207 DpnD-PcfM: DpnD/PcfM-like protein
Probab=32.99 E-value=46 Score=22.04 Aligned_cols=19 Identities=11% Similarity=0.158 Sum_probs=16.9
Q ss_pred CCCHHHHHHHHHHHHHccH
Q 023663 242 VNTLAEGVALAREIQLSGK 260 (279)
Q Consensus 242 ~~~~~eg~~~A~~~l~sG~ 260 (279)
++|.++|++++++.|.++.
T Consensus 18 A~s~eeA~~~v~~~y~~~e 36 (48)
T PF14207_consen 18 AESEEEAIEKVRDAYRNEE 36 (48)
T ss_pred eCCHHHHHHHHHHHHhCCC
Confidence 5789999999999998875
No 71
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=32.78 E-value=38 Score=31.64 Aligned_cols=46 Identities=30% Similarity=0.420 Sum_probs=32.7
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHH
Q 023663 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEA 65 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~ 65 (279)
+=++|=||.|+.| ++-+.|..+|+.|-+|+.-..+ +..+..|++..
T Consensus 5 v~f~GKGGVGKTT--~aaA~A~~lA~~g~kvLlvStD---PAhsL~d~f~~ 50 (322)
T COG0003 5 VFFTGKGGVGKTT--IAAATAVKLAESGKKVLLVSTD---PAHSLGDVFDL 50 (322)
T ss_pred EEEecCCcccHHH--HHHHHHHHHHHcCCcEEEEEeC---CCCchHhhhcc
Confidence 3368999999997 6777789999999887765443 34445566554
No 72
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=32.70 E-value=2e+02 Score=26.07 Aligned_cols=133 Identities=19% Similarity=0.098 Sum_probs=87.8
Q ss_pred CcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHH-cCCCCC-----CCHHHHHHHHHhcC-
Q 023663 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEA-LGVVID-----LDPEGVRRCVDEAG- 85 (279)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~-LGi~~~-----~s~~~~~~~l~~~g- 85 (279)
.++|+-||=|+|...++=..-+---|.+.|.|++.--|.+..++.-...-|+. +|+++. .|-.-+.+.+.+..
T Consensus 11 ~l~DlDGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~~ 90 (269)
T COG0647 11 FLFDLDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSGDATADYLAKQKP 90 (269)
T ss_pred EEEcCcCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHHHHHHHHHHhhCC
Confidence 47899999999999877666666667799999999999887666545555666 566443 34455666666642
Q ss_pred --eEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHcCCCeEEEE
Q 023663 86 --IGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVV 157 (279)
Q Consensus 86 --~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lG~~~alvv 157 (279)
=+|+--+ ..+...=+.+|+-...+ -||.++.+.++|.-...-.+.+++++..+.. ++-+|
T Consensus 91 ~~kv~viG~------~~l~~~l~~~G~~~~~~-----~~~~~~d~Vv~g~d~~~~~e~l~~a~~~i~~-g~~fI 152 (269)
T COG0647 91 GKKVYVIGE------EGLKEELEGAGFELVDE-----EEPARVDAVVVGLDRTLTYEKLAEALLAIAA-GAPFI 152 (269)
T ss_pred CCEEEEECC------cchHHHHHhCCcEEecc-----CCCCcccEEEEecCCCCCHHHHHHHHHHHHc-CCcEE
Confidence 4555442 12222224556543322 2444467889999998888999999987744 24444
No 73
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=32.45 E-value=34 Score=31.20 Aligned_cols=34 Identities=38% Similarity=0.482 Sum_probs=26.2
Q ss_pred eeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCC
Q 023663 16 DIVGTGGDGANTVNISTGASILAAACGAKVAKQGSR 51 (279)
Q Consensus 16 D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~ 51 (279)
=++|=||.||.| .+.-.|..||..|.+|+.-..+
T Consensus 4 a~~gKGGVGKTT--ta~nLA~~La~~G~rVLlID~D 37 (290)
T CHL00072 4 AVYGKGGIGKST--TSCNISIALARRGKKVLQIGCD 37 (290)
T ss_pred EEECCCCCcHHH--HHHHHHHHHHHCCCeEEEEecc
Confidence 368889999996 3555677789999999975443
No 74
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=31.85 E-value=1.1e+02 Score=28.16 Aligned_cols=46 Identities=7% Similarity=0.197 Sum_probs=30.1
Q ss_pred HHHHhhhCCCChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHcCCCeEEEEecC
Q 023663 102 RPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSE 160 (279)
Q Consensus 102 ~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lG~~~alvv~Ge 160 (279)
..++++.|++++.|+-.. +. ++.-...+..-+..+|.++.++++||
T Consensus 75 ~~i~~~~g~~~i~Hltcr------------~~-n~~~l~~~L~~~~~~GI~niLaLrGD 120 (296)
T PRK09432 75 KGIKKRTGLEAAPHLTCI------------DA-TPDELRTIAKDYWNNGIRHIVALRGD 120 (296)
T ss_pred HHHHHHhCCCeeeecccC------------CC-CHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 456678888888777433 32 33334444444578899999999884
No 75
>KOG1220 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]
Probab=31.56 E-value=1e+02 Score=31.13 Aligned_cols=116 Identities=14% Similarity=0.094 Sum_probs=77.1
Q ss_pred CCCCCC-CccchHHHHHHHHhCCCcEEeecCCCCCCccc-HHHHHHHc-CCCCCCCHHHHHHHHHhcCeEEEeC---Ccc
Q 023663 21 GGDGAN-TVNISTGASILAAACGAKVAKQGSRSSSSACG-SADVLEAL-GVVIDLDPEGVRRCVDEAGIGFMMS---TKY 94 (279)
Q Consensus 21 ggdG~~-t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~G-s~dvLe~L-Gi~~~~s~~~~~~~l~~~g~~fl~~---~~~ 94 (279)
|+||+- +-+.+.++|.++...|.+|...|--..|+-+- +...|++. ||=+..|. .--+.+|+-|.+. +..
T Consensus 108 G~D~R~~S~~fA~l~a~vf~~~g~~v~lf~~~v~TP~vpfav~~l~~dAgIMiTASH----nPk~dNGyKvYwsNG~qii 183 (607)
T KOG1220|consen 108 GHDGRYNSKRFAELVAAVFLLNGFKVYLFSELVPTPFVPFAVLTLGADAGIMITASH----NPKEDNGYKVYWSNGAQII 183 (607)
T ss_pred ecCCccchHHHHHHHHHHHHhCCceEEEeccccCCCcchhHHHHhccCceEEEeccC----CccccCCEEEEecCCcccc
Confidence 899986 77899999999999999999999666666544 55556666 66554433 2346899999876 577
Q ss_pred ChhhhchHHHHhh-hCCCC---hhhhhhhccCCCCCCceEEEeeChhhHHHHHH
Q 023663 95 HPAMKFVRPVRKK-LKVKT---VFNILGPMLNPACVPFAVVGVYNENLVLKMAN 144 (279)
Q Consensus 95 ~P~l~~l~~lR~~-lg~Rt---~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~ 144 (279)
.|....+...+.. +--|. -.|.+ .-+| -.....++..|+|.+.+-+
T Consensus 184 ~PhD~~I~~~~~~nl~p~~s~wd~slv--~s~~--l~~d~~~~~~~~~~e~~k~ 233 (607)
T KOG1220|consen 184 SPHDEKISDSIEANLEPRLSSWDDSLV--KSHP--LLHDILAVIIPPYFEVYKE 233 (607)
T ss_pred CchhHHHHHHHHhccCcccchhhhhHH--hcch--hhcCchhccchHHHHHHHh
Confidence 8888888777642 22222 12221 1122 2333456777777777665
No 76
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=31.47 E-value=37 Score=27.59 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=24.2
Q ss_pred eCCCCCCCCCccchHHHHHHHHhCCCcEEeecC
Q 023663 18 VGTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (279)
Q Consensus 18 ~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~ 50 (279)
.+.||.|+.| ++.-.|..++..|.+|+.--.
T Consensus 6 ~~kgG~GKtt--~a~~la~~l~~~g~~vllvD~ 36 (179)
T cd02036 6 SGKGGVGKTT--TTANLGTALAQLGYKVVLIDA 36 (179)
T ss_pred eCCCCCCHHH--HHHHHHHHHHhCCCeEEEEeC
Confidence 4569999997 566777888999999987533
No 77
>PRK12928 lipoyl synthase; Provisional
Probab=31.34 E-value=1.8e+02 Score=26.60 Aligned_cols=107 Identities=14% Similarity=0.191 Sum_probs=70.0
Q ss_pred HHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHH---HhcC--e----EEEe--CCccChhhhchHHH
Q 023663 36 ILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCV---DEAG--I----GFMM--STKYHPAMKFVRPV 104 (279)
Q Consensus 36 ~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~s~~~~~~~l---~~~g--~----~fl~--~~~~~P~l~~l~~l 104 (279)
..+.++|..|+.|+-. ++.++++.+.=. .+.++..+.+ .+.| + .+|. -+..---...+..+
T Consensus 157 ~~l~~Ag~~i~~hnlE------t~~~vl~~m~r~--~t~e~~le~l~~ak~~gp~i~~~s~iIvG~GET~ed~~etl~~L 228 (290)
T PRK12928 157 ATVLAAKPDVFNHNLE------TVPRLQKAVRRG--ADYQRSLDLLARAKELAPDIPTKSGLMLGLGETEDEVIETLRDL 228 (290)
T ss_pred HHHHHcCchhhcccCc------CcHHHHHHhCCC--CCHHHHHHHHHHHHHhCCCceecccEEEeCCCCHHHHHHHHHHH
Confidence 3345567778887732 247888887532 4555544433 3444 2 2222 24444445555555
Q ss_pred HhhhCCCChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHcCCCe
Q 023663 105 RKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKR 153 (279)
Q Consensus 105 R~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lG~~~ 153 (279)
| ++++. +=++++-+.|..-.+-|..+++|+-.+.+.+....+|+..
T Consensus 229 r-el~~d--~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~ 274 (290)
T PRK12928 229 R-AVGCD--RLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARELGFSH 274 (290)
T ss_pred H-hcCCC--EEEEEcCCCCCccCCceeeccCHHHHHHHHHHHHHcCCce
Confidence 5 46653 3345688889888889999999999999999999999964
No 78
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=30.80 E-value=31 Score=26.16 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=39.4
Q ss_pred EeecCCCCCCcccHHHHHHHcCCCC-------CCCHHHHHHHHHhcCeEEEeCCccChhhhchHHHHhhhC
Q 023663 46 AKQGSRSSSSACGSADVLEALGVVI-------DLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLK 109 (279)
Q Consensus 46 ~kHG~~~~~~~~Gs~dvLe~LGi~~-------~~s~~~~~~~l~~~g~~fl~~~~~~P~l~~l~~lR~~lg 109 (279)
+.+|+...++..-..+.|...|.++ ..++++..+.|++.||.+-.-..+.|.......+++..+
T Consensus 9 l~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~~~~ 79 (101)
T PF13344_consen 9 LYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKEHKG 79 (101)
T ss_dssp SEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHHHTT
T ss_pred eEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHhcCC
Confidence 3455554443333344444448743 467799999999999987666788888777777776444
No 79
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=30.09 E-value=1.7e+02 Score=27.73 Aligned_cols=94 Identities=19% Similarity=0.277 Sum_probs=71.1
Q ss_pred HHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCCCCCCHH-HHHHHHHhcCeEEEeC-CccChhhhchHHHHhhhCCCCh
Q 023663 36 ILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPE-GVRRCVDEAGIGFMMS-TKYHPAMKFVRPVRKKLKVKTV 113 (279)
Q Consensus 36 ~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~s~~-~~~~~l~~~g~~fl~~-~~~~P~l~~l~~lR~~lg~Rt~ 113 (279)
-++++|++-+..|=- ....|..=+|-.+|+++-++.+ ..-+.|.+.|+.+++. ..+.... +...+++|-.
T Consensus 261 ~lL~~cDl~if~~~R---QQgiGnI~lLl~~G~~v~L~~~np~~~~l~~~~ipVlf~~d~L~~~~--v~ea~rql~~--- 332 (360)
T PF07429_consen 261 ALLSRCDLGIFNHNR---QQGIGNICLLLQLGKKVFLSRDNPFWQDLKEQGIPVLFYGDELDEAL--VREAQRQLAN--- 332 (360)
T ss_pred HHHHhCCEEEEeech---hhhHhHHHHHHHcCCeEEEecCChHHHHHHhCCCeEEeccccCCHHH--HHHHHHHHhh---
Confidence 467889888887633 2346777788888999886554 5778899999988877 7777766 7888887762
Q ss_pred hhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHc
Q 023663 114 FNILGPMLNPACVPFAVVGVYNENLVLKMANALQRF 149 (279)
Q Consensus 114 ~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~l 149 (279)
...+-+.+|.|.|.+.-.+++...
T Consensus 333 ------------~dk~~iaFf~pny~~~w~~~l~~~ 356 (360)
T PF07429_consen 333 ------------VDKQQIAFFAPNYLQGWRQALRLA 356 (360)
T ss_pred ------------CcccceeeeCCchHHHHHHHHHHH
Confidence 344556899999999999888643
No 80
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=29.89 E-value=94 Score=26.15 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=23.3
Q ss_pred Ccceee-CCCCCCCCCccchHHHHHHHHhCCCcEEe
Q 023663 13 DAVDIV-GTGGDGANTVNISTGASILAAACGAKVAK 47 (279)
Q Consensus 13 ~~~D~~-gtggdG~~t~nis~~aA~vlA~~G~~V~k 47 (279)
.+|=++ +.||.|+.| ++...|..+|..|.+|+.
T Consensus 18 kvI~v~s~kgG~GKTt--~a~~LA~~la~~G~rVll 51 (204)
T TIGR01007 18 KVLLITSVKPGEGKST--TSANIAVAFAQAGYKTLL 51 (204)
T ss_pred cEEEEecCCCCCCHHH--HHHHHHHHHHhCCCeEEE
Confidence 445455 446777776 566677788899999986
No 81
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=29.82 E-value=3.3e+02 Score=26.12 Aligned_cols=128 Identities=24% Similarity=0.355 Sum_probs=70.2
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHHhcCeEEEeC--Ccc
Q 023663 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMS--TKY 94 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~s~~~~~~~l~~~g~~fl~~--~~~ 94 (279)
++|-||-|- -++|.+|++.|+.|. |.+.-... ..+-|+.+|+.+... .. .+.+++.-+.+... |.-
T Consensus 4 ~iGiggsGm------~~la~~L~~~G~~v~--~~D~~~~~--~~~~l~~~gi~~~~g-~~-~~~~~~~d~vV~spgi~~~ 71 (448)
T TIGR01082 4 FVGIGGIGM------SGIAEILLNRGYQVS--GSDIAENA--TTKRLEALGIPIYIG-HS-AENLDDADVVVVSAAIKDD 71 (448)
T ss_pred EEEECHHHH------HHHHHHHHHCCCeEE--EECCCcch--HHHHHHHCcCEEeCC-CC-HHHCCCCCEEEECCCCCCC
Confidence 456666442 246788899999997 55543322 445688899977543 11 22344444443322 444
Q ss_pred ChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEEeeChh-hHHHHHHHHHHcCCCeEEEEec
Q 023663 95 HPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNEN-LVLKMANALQRFGLKRALVVHS 159 (279)
Q Consensus 95 ~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~-~~~~~~~~~~~lG~~~alvv~G 159 (279)
+|.+.... ++.+.+.+-.-++..++++ ....-|+|-.-|. ...++..+|+..|.+...++-|
T Consensus 72 ~p~~~~a~--~~~i~v~~~~el~~~~~~~-~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg 134 (448)
T TIGR01082 72 NPEIVEAK--ERGIPVIRRAEMLAELMRF-RHSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGG 134 (448)
T ss_pred CHHHHHHH--HcCCceEeHHHHHHHHHhc-CcEEEEECCCChHHHHHHHHHHHHHcCCCCeEEECc
Confidence 55554432 2233334555566666653 1334555555554 4456677788888744444544
No 82
>PLN02428 lipoic acid synthase
Probab=29.63 E-value=3e+02 Score=26.05 Aligned_cols=110 Identities=13% Similarity=0.120 Sum_probs=68.9
Q ss_pred HHHHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHH---Hhc--Ce----EEEe--CCccChhhhchH
Q 023663 34 ASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCV---DEA--GI----GFMM--STKYHPAMKFVR 102 (279)
Q Consensus 34 aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~s~~~~~~~l---~~~--g~----~fl~--~~~~~P~l~~l~ 102 (279)
+.-.++.+|+.++-|+-.. +..+...+.- ...+.++..+.| .+. |+ .||. -+..---...+.
T Consensus 197 lL~~L~eAG~d~i~hnlET------v~rL~~~Ir~-~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGLGET~Edv~e~l~ 269 (349)
T PLN02428 197 AVETVATSGLDVFAHNIET------VERLQRIVRD-PRAGYKQSLDVLKHAKESKPGLLTKTSIMLGLGETDEEVVQTME 269 (349)
T ss_pred HHHHHHHcCCCEEccCccC------cHHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCeEEEeEEEecCCCHHHHHHHHH
Confidence 5556678899998888664 2334444421 123344333333 222 32 2222 244444444444
Q ss_pred HHHhhhCCCChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHcCCCe
Q 023663 103 PVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKR 153 (279)
Q Consensus 103 ~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lG~~~ 153 (279)
.+| ++|+.. -+++..+.|......|.-+.||+-.+.+.+....+|+..
T Consensus 270 ~Lr-elgvd~--vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~ 317 (349)
T PLN02428 270 DLR-AAGVDV--VTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRY 317 (349)
T ss_pred HHH-HcCCCE--EeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCce
Confidence 444 455443 377788899888999999999999999999999999964
No 83
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=29.40 E-value=35 Score=30.37 Aligned_cols=42 Identities=29% Similarity=0.378 Sum_probs=31.2
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHH
Q 023663 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVL 63 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvL 63 (279)
+.|.||.|+.| ++...|..+|+.|.+|+.-..+.. ....|+|
T Consensus 5 ~~gkgG~GKtt--~a~~la~~~a~~g~~vLlvd~D~~---~sl~~~~ 46 (254)
T cd00550 5 FGGKGGVGKTT--ISAATAVRLAEQGKKVLLVSTDPA---HSLSDSF 46 (254)
T ss_pred EECCCCchHHH--HHHHHHHHHHHCCCCceEEeCCCc---ccHHHHh
Confidence 57889999987 577788889999999998765442 2445554
No 84
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=29.06 E-value=64 Score=29.56 Aligned_cols=35 Identities=11% Similarity=0.092 Sum_probs=25.2
Q ss_pred eCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCC
Q 023663 18 VGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSS 54 (279)
Q Consensus 18 ~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~ 54 (279)
+| -|.+...+|+-.+..+- ...++|.++||+.+.+
T Consensus 180 HG-~y~~~p~Ld~~~L~~I~-~~~~vPLVLHGgSG~~ 214 (284)
T PRK09195 180 HG-MYKGEPKLDFDRLENIR-QWVNIPLVLHGASGLP 214 (284)
T ss_pred cc-ccCCCCcCCHHHHHHHH-HHhCCCeEEecCCCCC
Confidence 44 56665578888776664 5569999999997654
No 85
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=29.00 E-value=57 Score=27.63 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=19.1
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEE
Q 023663 15 VDIVGTGGDGANTVNISTGASILAAACGAKVA 46 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~ 46 (279)
|.++|.|| +-+..|..+|..|++|.
T Consensus 3 I~ViGlGy-------vGl~~A~~lA~~G~~V~ 27 (185)
T PF03721_consen 3 IAVIGLGY-------VGLPLAAALAEKGHQVI 27 (185)
T ss_dssp EEEE--ST-------THHHHHHHHHHTTSEEE
T ss_pred EEEECCCc-------chHHHHHHHHhCCCEEE
Confidence 56889999 45677899999999998
No 86
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=28.77 E-value=1.2e+02 Score=26.35 Aligned_cols=57 Identities=19% Similarity=0.093 Sum_probs=40.4
Q ss_pred CcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCCC
Q 023663 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVI 70 (279)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~ 70 (279)
-++|+.||-+++.+.++=..-+---|.+.|+++..=.|... +..-..+.|+.+|++.
T Consensus 11 ~~~D~dG~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~-~~~~~~~~L~~~gl~~ 67 (242)
T TIGR01459 11 FLLDLWGVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPR-NIFSLHKTLKSLGINA 67 (242)
T ss_pred EEEecccccccCCccCccHHHHHHHHHHCCCEEEEEeCCCC-ChHHHHHHHHHCCCCc
Confidence 36899999999888665555455556778999998777432 2222347899999976
No 87
>PLN02540 methylenetetrahydrofolate reductase
Probab=28.68 E-value=1e+02 Score=31.21 Aligned_cols=70 Identities=10% Similarity=0.136 Sum_probs=45.3
Q ss_pred HHHHHhcCeEEEeCC------ccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHcCC
Q 023663 78 RRCVDEAGIGFMMST------KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGL 151 (279)
Q Consensus 78 ~~~l~~~g~~fl~~~------~~~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lG~ 151 (279)
.+.|.+.+-.|+... ...-.+.-...+++++|++++.|+...=.|. .-.+...+-+..+|.
T Consensus 21 ~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~-------------~~L~~~L~~a~~~GI 87 (565)
T PLN02540 21 MDRMVAHGPLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTCTNMPV-------------EKIDHALETIKSNGI 87 (565)
T ss_pred HHHHhccCCCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCH-------------HHHHHHHHHHHHCCC
Confidence 345566677777652 2223455566678889999998884443332 334444445578999
Q ss_pred CeEEEEecC
Q 023663 152 KRALVVHSE 160 (279)
Q Consensus 152 ~~alvv~Ge 160 (279)
++.++++||
T Consensus 88 rNILALrGD 96 (565)
T PLN02540 88 QNILALRGD 96 (565)
T ss_pred CEEEEECCC
Confidence 999999984
No 88
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=28.36 E-value=42 Score=29.91 Aligned_cols=32 Identities=34% Similarity=0.383 Sum_probs=24.9
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEee
Q 023663 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kH 48 (279)
|=++|=||.||.| .+.-.|..||..|.+|+.-
T Consensus 4 iav~~KGGVGKTT--~~~nLA~~La~~G~rVLlI 35 (274)
T PRK13235 4 VAIYGKGGIGKST--TTQNTVAGLAEMGKKVMVV 35 (274)
T ss_pred EEEeCCCCccHHH--HHHHHHHHHHHCCCcEEEE
Confidence 4456789999996 3555777889999999875
No 89
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=28.14 E-value=41 Score=29.91 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=22.7
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEee
Q 023663 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~kH 48 (279)
+.+.||.|+.| ++.-.|..+|..|.+|+.-
T Consensus 109 ts~~~g~Gktt--~a~nLA~~la~~g~~VllI 138 (274)
T TIGR03029 109 VSAKSGEGCSY--IAANLAIVFSQLGEKTLLI 138 (274)
T ss_pred ECCCCCCCHHH--HHHHHHHHHHhcCCeEEEE
Confidence 45568889887 4555667789999999865
No 90
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=28.06 E-value=49 Score=30.56 Aligned_cols=122 Identities=20% Similarity=0.206 Sum_probs=73.3
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEe---ecCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHHhcCeEEEeCCc
Q 023663 17 IVGTGGDGANTVNISTGASILAAACGAKVAK---QGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTK 93 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~k---HG~~~~~~~~Gs~dvLe~LGi~~~~s~~~~~~~l~~~g~~fl~~~~ 93 (279)
+.|||+-|.. +...+++.-|.+++- |...-.....|-.--+..+||....+.+..-+.+.+ +..
T Consensus 7 qyGtG~vGv~------air~l~akpe~elvgawv~s~ak~Gkdlgelagl~dlgV~a~~~~~avlAtl~~-~~~------ 73 (350)
T COG3804 7 QYGTGSVGVA------AIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLPDLGVIATNSIDAVLATLAD-AVI------ 73 (350)
T ss_pred EeccchHHHH------HHHHHHcCCCCceEEEEecCcccccccHHHhcCCCCceeEeecccccceecccc-cee------
Confidence 5788887654 456777887888873 333222223333334444888776666655333322 122
Q ss_pred cChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHcCCCeEEEEec
Q 023663 94 YHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS 159 (279)
Q Consensus 94 ~~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lG~~~alvv~G 159 (279)
|.|....+-.+|+-|+ .=+|.+.+ .+..|.=+++-|+..++.-+.+++.|. ..+-..|
T Consensus 74 y~~~~~~~~~y~rlL~--aGiNVv~~-----g~~l~yPw~~~PelaeKpl~lAaraGn-~Tl~gtG 131 (350)
T COG3804 74 YAPLLPSVDEYARLLR--AGINVVTP-----GPVLQYPWFYPPELAEKPLELAARAGN-ATLHGTG 131 (350)
T ss_pred eecccchHHHHHHHHH--cCCceecc-----CccccCCCcCChHHhhchHHHHHhcCC-ceEEecc
Confidence 2222223667777665 67787665 223555589999999999999999985 3344444
No 91
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=28.02 E-value=95 Score=27.80 Aligned_cols=70 Identities=17% Similarity=-0.029 Sum_probs=47.0
Q ss_pred cceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCCCCC----C-HHHHHHHHHh
Q 023663 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDL----D-PEGVRRCVDE 83 (279)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~----s-~~~~~~~l~~ 83 (279)
++|+-||=++|.+.++=..-+---+-+.|+++..=.|++..++.-..+.|+.+|+++.. + ..-+.+.|.+
T Consensus 6 ~~D~DGtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~ts~~~~~~~l~~ 80 (279)
T TIGR01452 6 IFDCDGVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLFSSALCAARLLRQ 80 (279)
T ss_pred EEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEecHHHHHHHHHHh
Confidence 57888998888776654333433556789999887777766665666788999997652 1 1334455666
No 92
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=27.90 E-value=2.2e+02 Score=21.18 Aligned_cols=84 Identities=15% Similarity=0.173 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHhcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCC--CCCceEEEeeChhhHHHHHHHHHH
Q 023663 71 DLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPA--CVPFAVVGVYNENLVLKMANALQR 148 (279)
Q Consensus 71 ~~s~~~~~~~l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP~--~~~~~v~Gv~h~~~~~~~~~~~~~ 148 (279)
..+++++.+.+++.+..++.... |.-..-..+...+-+ +...+...+++. ..+..++.. +-......+..|+.
T Consensus 6 ~is~~el~~~l~~~~~~ivDvR~--~~e~~~ghi~gA~~i--p~~~l~~~~~~~~~~~~ivv~c~-~g~~s~~a~~~L~~ 80 (108)
T PRK00162 6 CINVEQAHQKLQEGGAVLVDIRD--PQSFAMGHAPGAFHL--TNDSLGAFMRQADFDTPVMVMCY-HGNSSQGAAQYLLQ 80 (108)
T ss_pred ccCHHHHHHHHHcCCCEEEEcCC--HHHHhcCCCCCCeEC--CHHHHHHHHHhcCCCCCEEEEeC-CCCCHHHHHHHHHH
Confidence 46788998888877877777732 111111111111100 011222222222 233444332 22334556667788
Q ss_pred cCCCeEEEEec
Q 023663 149 FGLKRALVVHS 159 (279)
Q Consensus 149 lG~~~alvv~G 159 (279)
.|++++.++.|
T Consensus 81 ~G~~~v~~l~G 91 (108)
T PRK00162 81 QGFDVVYSIDG 91 (108)
T ss_pred CCchheEEecC
Confidence 88877776654
No 93
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=27.81 E-value=42 Score=29.74 Aligned_cols=31 Identities=32% Similarity=0.460 Sum_probs=23.4
Q ss_pred eeeCCCCCCCCCccchHHHHHHHHhCCCcEEee
Q 023663 16 DIVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (279)
Q Consensus 16 D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kH 48 (279)
=+.|=||.||.| ++.-.|..||..|.+|+.-
T Consensus 4 ~~~gKGGVGKTT--~~~nLA~~La~~g~rVLli 34 (268)
T TIGR01281 4 AVYGKGGIGKST--TSSNLSVAFAKLGKRVLQI 34 (268)
T ss_pred EEEcCCcCcHHH--HHHHHHHHHHhCCCeEEEE
Confidence 356889999996 3555666778999999853
No 94
>PF01364 Peptidase_C25: Peptidase family C25 This family belongs to family C25 of the peptidase classification.; InterPro: IPR001769 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C25 (gingipain, clan CD). The protein fold of the peptidase domain for members of this entry resembles that of caspase 1, the type example for clan CD. This is a protein family found only in the bacteria. Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=27.40 E-value=1.1e+02 Score=28.88 Aligned_cols=69 Identities=9% Similarity=0.095 Sum_probs=45.7
Q ss_pred EEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHcC---CCeEEEEecCC
Q 023663 88 FMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFG---LKRALVVHSEG 161 (279)
Q Consensus 88 fl~~~~~~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lG---~~~alvv~GeG 161 (279)
.+..+.|.+++.+++..|++.|+++.+-+++-+-|-+. -|..++.-...+.+-+-.-. ..+.+++=|++
T Consensus 3 IIt~~~~~~~~~~la~~r~~~G~~~~vv~v~~I~~~f~-----~G~~~~~aIR~fi~~~y~~~~~~~~~yvlLvGd~ 74 (378)
T PF01364_consen 3 IITPPEFMDAAQRLAEWRRSQGYKVLVVTVEDIYNEFS-----YGIPDPTAIRNFIRYAYDNWSPPKPRYVLLVGDA 74 (378)
T ss_dssp EEE-GGGGGG-HHHHHHHHHTT-EEEEEEHHHH-SS------------HHHHHHHHHHHHHST----EEEEEEES-T
T ss_pred EEECHHHHHHHHHHHHHHHHcCCcEEEEEHHHhhhhhh-----hccccHHHHHHHHHHHHHhcccCCCcEEEEEccc
Confidence 45568899999999999999999999999999988765 47788888777777666655 34567777766
No 95
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=27.39 E-value=74 Score=29.18 Aligned_cols=35 Identities=11% Similarity=0.182 Sum_probs=24.7
Q ss_pred eCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCC
Q 023663 18 VGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSS 54 (279)
Q Consensus 18 ~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~ 54 (279)
+| -|.|...+++-.+..+ -...++|.++||+.+++
T Consensus 181 HG-~Y~~~p~L~~~~L~~I-~~~~~iPLVLHGgSG~~ 215 (285)
T PRK07709 181 HG-PYKGEPNLGFAEMEQV-RDFTGVPLVLHGGTGIP 215 (285)
T ss_pred cc-CcCCCCccCHHHHHHH-HHHHCCCEEEeCCCCCC
Confidence 44 4666557777766665 55679999999995544
No 96
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=27.24 E-value=4.4e+02 Score=24.73 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=20.0
Q ss_pred chHHHHHHHHhCCCcEEeecCC
Q 023663 30 ISTGASILAAACGAKVAKQGSR 51 (279)
Q Consensus 30 is~~aA~vlA~~G~~V~kHG~~ 51 (279)
|-|+.|.++|..|.+|.+-|.+
T Consensus 12 wGTALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 12 WGTALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred HHHHHHHHHHhcCCeeEEEecC
Confidence 9999999999999999988764
No 97
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=27.01 E-value=2.7e+02 Score=25.09 Aligned_cols=68 Identities=28% Similarity=0.422 Sum_probs=38.3
Q ss_pred CCcceeeCCCCCCCCCccchHHHHHHHHhC-C-CcEEeecCCCCCCcccHHHHH----HHcCCCC--CCCHHHHHHHHHh
Q 023663 12 GDAVDIVGTGGDGANTVNISTGASILAAAC-G-AKVAKQGSRSSSSACGSADVL----EALGVVI--DLDPEGVRRCVDE 83 (279)
Q Consensus 12 ~~~~D~~gtggdG~~t~nis~~aA~vlA~~-G-~~V~kHG~~~~~~~~Gs~dvL----e~LGi~~--~~s~~~~~~~l~~ 83 (279)
..++=++|.+|.|+.|.-.. .|..++.. | .+|..--.+ +.+.+..+-| +.+|+++ ..++++..+.+++
T Consensus 194 ~~vi~~vGptGvGKTTt~~k--La~~~~~~~g~~~V~li~~D--~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~ 269 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAK--LAARFVLEHGNKKVALITTD--TYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR 269 (282)
T ss_pred CeEEEEECCCCCCHHHHHHH--HHHHHHHHcCCCeEEEEECC--ccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH
Confidence 34677999999999842111 12222222 4 788766544 3455554444 3457765 3566666666654
No 98
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=26.62 E-value=78 Score=29.03 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=23.2
Q ss_pred CCCCCCCccchHHHHHHHHhCCCcEEeecCCCCC
Q 023663 21 GGDGANTVNISTGASILAAACGAKVAKQGSRSSS 54 (279)
Q Consensus 21 ggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~ 54 (279)
-|.|...+++-.+..+ -+..++|.++||+.+.+
T Consensus 183 ~Y~~~p~Ld~~~L~~I-~~~~~vPLVLHGgSG~~ 215 (286)
T PRK08610 183 PYKGEPKLGFKEMEEI-GLSTGLPLVLHGGTGIP 215 (286)
T ss_pred ccCCCCCCCHHHHHHH-HHHHCCCEEEeCCCCCC
Confidence 5655556677766655 45679999999996544
No 99
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=26.29 E-value=46 Score=28.71 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=27.9
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCC
Q 023663 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRS 52 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~ 52 (279)
+.|.||.|+.+ ++...|..+|+.|.+|..-..+-
T Consensus 4 ~~g~~g~Gkt~--~~~~la~~~a~~g~~~~l~~~d~ 37 (217)
T cd02035 4 FTGKGGVGKTT--IAAATAVRLAEEGKKVLLVSTDP 37 (217)
T ss_pred EeCCCCchHHH--HHHHHHHHHHHCCCcEEEEECCC
Confidence 57899999987 47778889999999999876543
No 100
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=26.23 E-value=84 Score=28.82 Aligned_cols=33 Identities=9% Similarity=0.067 Sum_probs=23.8
Q ss_pred CCCCCCC-ccchHHHHHHHHhCCCcEEeecCCCCC
Q 023663 21 GGDGANT-VNISTGASILAAACGAKVAKQGSRSSS 54 (279)
Q Consensus 21 ggdG~~t-~nis~~aA~vlA~~G~~V~kHG~~~~~ 54 (279)
-|.+... +++-.+..+ -...++|.++||+.+.+
T Consensus 185 ~y~~~p~~Ld~~~L~~I-~~~v~vPLVlHGgSG~~ 218 (288)
T TIGR00167 185 VYKGEPKGLDFERLEEI-QKYVNLPLVLHGGSGIP 218 (288)
T ss_pred ccCCCCCccCHHHHHHH-HHHhCCCEEEeCCCCCC
Confidence 5655444 888877766 45669999999997644
No 101
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=26.18 E-value=6.4e+02 Score=24.85 Aligned_cols=130 Identities=22% Similarity=0.354 Sum_probs=83.2
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHHhcCeEEEeC--C
Q 023663 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMS--T 92 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~s~~~~~~~l~~~g~~fl~~--~ 92 (279)
+-++|.||-| ....|.+|...|++|- |++-..+. ..+.|+++|+.+-...+.. . +.......... +
T Consensus 10 iHfIGIgG~G------MsglA~iL~~~G~~Vs--GSD~~~~~--~t~~L~~~G~~i~~gh~~~-n-i~~~~~VV~s~Ai~ 77 (459)
T COG0773 10 IHFIGIGGIG------MSGLAEILLNLGYKVS--GSDLAESP--MTQRLEALGIEIFIGHDAE-N-ILDADVVVVSNAIK 77 (459)
T ss_pred EEEEeecccc------HHHHHHHHHhCCCceE--CccccccH--HHHHHHHCCCeEeCCCCHH-H-cCCCceEEEecccC
Confidence 4445555544 2467889999999998 77664444 7889999999876543322 2 22222322222 5
Q ss_pred ccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEEeeChhh-HHHHHHHHHHcCCCeEEEEec
Q 023663 93 KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENL-VLKMANALQRFGLKRALVVHS 159 (279)
Q Consensus 93 ~~~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~-~~~~~~~~~~lG~~~alvv~G 159 (279)
.=+|.+ ....++.+.+-+---.|+-|+.. +...-|.|-=-|.. ...++.++...|.+-.+++-|
T Consensus 78 ~~NpEi--~~A~e~~ipi~~r~e~Laelm~~-~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iGG 142 (459)
T COG0773 78 EDNPEI--VAALERGIPVISRAEMLAELMRF-RTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIGG 142 (459)
T ss_pred CCCHHH--HHHHHcCCCeEcHHHHHHHHHhC-CeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEECc
Confidence 556666 33345556666777888888888 55566666655544 456677778888887788754
No 102
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=25.93 E-value=1.5e+02 Score=25.91 Aligned_cols=70 Identities=23% Similarity=0.122 Sum_probs=45.2
Q ss_pred cceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHH-cCCCCC-----CCHHHHHHHHHh
Q 023663 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEA-LGVVID-----LDPEGVRRCVDE 83 (279)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~-LGi~~~-----~s~~~~~~~l~~ 83 (279)
++|+-||=.++.+.++-..-+-.-+-+.|+++....|.+--+..-..+.|.. +|+++. .+...+.+.|.+
T Consensus 2 lfD~DGvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~~~~~~~l~~ 77 (236)
T TIGR01460 2 LFDIDGVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSGSVTKDLLRQ 77 (236)
T ss_pred EEeCcCccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHHHHHHHHHHH
Confidence 4788899888887655333333344556999999998875555556666777 788653 222345566664
No 103
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=25.92 E-value=1.7e+02 Score=22.41 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=39.9
Q ss_pred hHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCCCCC-------CH---HHHHHHHHhcCeEEEeC
Q 023663 31 STGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDL-------DP---EGVRRCVDEAGIGFMMS 91 (279)
Q Consensus 31 s~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~-------s~---~~~~~~l~~~g~~fl~~ 91 (279)
....+-.+...|+++. +..|+++.|+..|+++.. +. ..+.+.+.+..+.|+-.
T Consensus 15 ~~~~a~~l~~~G~~i~--------aT~gTa~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~idlVIn 77 (116)
T cd01423 15 LLPTAQKLSKLGYKLY--------ATEGTADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVIN 77 (116)
T ss_pred HHHHHHHHHHCCCEEE--------EccHHHHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCceEEEE
Confidence 5567777889999998 445799999999996542 11 56788888888888854
No 104
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=25.52 E-value=61 Score=24.05 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=33.1
Q ss_pred HHHHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCC----CC--CCHH------HHHHHHHhcCeEEEe
Q 023663 34 ASILAAACGAKVAKQGSRSSSSACGSADVLEALGVV----ID--LDPE------GVRRCVDEAGIGFMM 90 (279)
Q Consensus 34 aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~----~~--~s~~------~~~~~l~~~g~~fl~ 90 (279)
.|--++..|+.+. +..|+++.|++-|++ +. ..++ ++.+.+++..|.++-
T Consensus 5 ~a~~l~~lG~~i~--------AT~gTa~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVI 65 (95)
T PF02142_consen 5 LAKRLAELGFEIY--------ATEGTAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVI 65 (95)
T ss_dssp HHHHHHHTTSEEE--------EEHHHHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHCCCEEE--------EChHHHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEE
Confidence 4556788888887 455699999999998 32 2221 288889988888663
No 105
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=24.76 E-value=62 Score=29.64 Aligned_cols=36 Identities=14% Similarity=0.096 Sum_probs=24.1
Q ss_pred eCCCCCC--CCCccchHHHHHHHHhCCCcEEeecCCCCC
Q 023663 18 VGTGGDG--ANTVNISTGASILAAACGAKVAKQGSRSSS 54 (279)
Q Consensus 18 ~gtggdG--~~t~nis~~aA~vlA~~G~~V~kHG~~~~~ 54 (279)
+| .|.+ ...+|+-.+..+--+..++|.++||+.+++
T Consensus 180 HG-~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~ 217 (287)
T PF01116_consen 180 HG-MYKGGKKPKLDFDRLKEIREAVPDIPLVLHGGSGLP 217 (287)
T ss_dssp SS-SBSSSSSTC--HHHHHHHHHHHHTSEEEESSCTTS-
T ss_pred cc-ccCCCCCcccCHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 44 6666 447788887777655548999999997654
No 106
>PRK10853 putative reductase; Provisional
Probab=24.35 E-value=52 Score=25.83 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=37.7
Q ss_pred CCCCCCCHHHHHHHHHhcCeEEEeCC--ccChhhhchHHHHhhhCCCChhhhhhh
Q 023663 67 GVVIDLDPEGVRRCVDEAGIGFMMST--KYHPAMKFVRPVRKKLKVKTVFNILGP 119 (279)
Q Consensus 67 Gi~~~~s~~~~~~~l~~~g~~fl~~~--~~~P~l~~l~~lR~~lg~Rt~~n~l~~ 119 (279)
|++-+.|-..|.+.|+++|+.|-+.. .--|.-..|..+=+++|+..++|+=+.
T Consensus 6 ~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~~~g~~~l~n~~~~ 60 (118)
T PRK10853 6 GIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFIDELGWEALLNTRGT 60 (118)
T ss_pred cCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHHHcCHHHHHhcCCc
Confidence 67777788899999999999887764 334556666666677886655555443
No 107
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=24.15 E-value=91 Score=28.96 Aligned_cols=31 Identities=6% Similarity=0.158 Sum_probs=23.7
Q ss_pred CCCCccchHHHHHHHHhCCCcEEeecCCCCCC
Q 023663 24 GANTVNISTGASILAAACGAKVAKQGSRSSSS 55 (279)
Q Consensus 24 G~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~ 55 (279)
|...+|+-.+..+ -...++|.++||+.+++.
T Consensus 187 ~~p~L~f~~L~~I-~~~~~iPLVLHGgSGip~ 217 (307)
T PRK05835 187 GEPKLDFERLQEV-KRLTNIPLVLHGASAIPD 217 (307)
T ss_pred CCCccCHHHHHHH-HHHhCCCEEEeCCCCCch
Confidence 4346788877775 456699999999998775
No 108
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=23.95 E-value=92 Score=28.49 Aligned_cols=33 Identities=9% Similarity=0.061 Sum_probs=24.4
Q ss_pred CCCCCCCccchHHHHHHHHhCCCcEEeecCCCCC
Q 023663 21 GGDGANTVNISTGASILAAACGAKVAKQGSRSSS 54 (279)
Q Consensus 21 ggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~ 54 (279)
-|.+...+++-.+..+ -+..++|.++||+.+++
T Consensus 180 ~yk~~p~Ldf~~L~~I-~~~~~iPLVlHGgSG~~ 212 (282)
T TIGR01858 180 LYKKTPKLDFDRLAEI-REVVDVPLVLHGASDVP 212 (282)
T ss_pred CcCCCCccCHHHHHHH-HHHhCCCeEEecCCCCC
Confidence 5655457777777766 45669999999997764
No 109
>PF07471 Phage_Nu1: Phage DNA packaging protein Nu1; InterPro: IPR010906 This entry is represented by the Bacteriophage lambda, Nu1, terminase small subunit. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Terminase, the DNA packaging enzyme of bacteriophage lambda, is a heteromultimer composed of subunits Nu1 and A. The smaller Nu1 terminase subunit has a low-affinity ATPase stimulated by non-specific DNA [].; PDB: 1J9I_A.
Probab=23.60 E-value=34 Score=28.72 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=23.6
Q ss_pred ccchHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHc
Q 023663 28 VNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL 66 (279)
Q Consensus 28 ~nis~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~L 66 (279)
|++|+-.-==.-..|+||+.+|+++....+-++++.+-+
T Consensus 12 ~gvS~~ti~~W~~~G~Pv~~~gg~G~~~~~d~~~vi~W~ 50 (164)
T PF07471_consen 12 FGVSERTIDKWQRQGMPVVSRGGRGREWEYDTADVIQWY 50 (164)
T ss_dssp TT--HHHHHHHTTTT---SS-GGCTS--EEECCHHHHHH
T ss_pred HCCCHHHHHHHHHCCCchhccCCCCccceecHHHHHHHH
Confidence 556665444445679999999999998888888888766
No 110
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=23.45 E-value=61 Score=29.03 Aligned_cols=32 Identities=28% Similarity=0.398 Sum_probs=24.6
Q ss_pred ceeeCC-CCCCCCCccchHHHHHHHHhCCCcEEee
Q 023663 15 VDIVGT-GGDGANTVNISTGASILAAACGAKVAKQ 48 (279)
Q Consensus 15 ~D~~gt-ggdG~~t~nis~~aA~vlA~~G~~V~kH 48 (279)
|-++|+ ||.|+.| ++-..|-.|+..|.+|+--
T Consensus 4 iai~s~kGGvG~TT--ltAnLA~aL~~~G~~VlaI 36 (243)
T PF06564_consen 4 IAIVSPKGGVGKTT--LTANLAWALARLGESVLAI 36 (243)
T ss_pred EEEecCCCCCCHHH--HHHHHHHHHHHCCCcEEEE
Confidence 445665 8888887 5666888899999999853
No 111
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=23.45 E-value=3.7e+02 Score=24.40 Aligned_cols=64 Identities=22% Similarity=0.242 Sum_probs=43.1
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEe----ecCCCCCCc--------ccHHHHHHHcCCCCCCCHHHHHHHHH
Q 023663 17 IVGTGGDGANTVNISTGASILAAACGAKVAK----QGSRSSSSA--------CGSADVLEALGVVIDLDPEGVRRCVD 82 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~k----HG~~~~~~~--------~Gs~dvLe~LGi~~~~s~~~~~~~l~ 82 (279)
+.|++|.|+.|+--. ..-++++.|=+|.. -+|+.++.. ++..|+++++|+-.+-..--+.+.|+
T Consensus 7 VIGPPgSGKsTYc~g--~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~ 82 (290)
T KOG1533|consen 7 VIGPPGSGKSTYCNG--MSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLE 82 (290)
T ss_pred EEcCCCCCccchhhh--HHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHH
Confidence 579999999985443 34456777765542 677777632 45899999998877655544444443
No 112
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=23.39 E-value=61 Score=31.74 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=28.8
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCC
Q 023663 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSS 54 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~ 54 (279)
++-||-+|+.| .+++.+-+|-++|.++..=||=+.+
T Consensus 113 vaITGTNGKTT--TTsli~~~l~~~G~~~~lgGNIG~p 148 (448)
T COG0771 113 VAITGTNGKTT--TTSLIAHLLKAAGLDALLGGNIGTP 148 (448)
T ss_pred EEEECCCchHH--HHHHHHHHHHhcCCCceeccccCcc
Confidence 45577788885 4778899999999999999996643
No 113
>PF13627 LPAM_2: Prokaryotic lipoprotein-attachment site
Probab=23.30 E-value=64 Score=18.19 Aligned_cols=14 Identities=21% Similarity=0.480 Sum_probs=10.8
Q ss_pred hHHHHHHHHhCCCc
Q 023663 31 STGASILAAACGAK 44 (279)
Q Consensus 31 s~~aA~vlA~~G~~ 44 (279)
..++++.+++||.|
T Consensus 5 ~~~~~~~LsgCG~K 18 (24)
T PF13627_consen 5 LLALALALSGCGQK 18 (24)
T ss_pred HHHHHHHHHhcccC
Confidence 45678888999976
No 114
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=23.30 E-value=37 Score=27.83 Aligned_cols=56 Identities=11% Similarity=0.172 Sum_probs=36.1
Q ss_pred HHHcCCCCCCCHHHHHHHHHhcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCC
Q 023663 63 LEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP 123 (279)
Q Consensus 63 Le~LGi~~~~s~~~~~~~l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP 123 (279)
++-++|+.+.+.+++.+.+++.++.|++.|...+... .+.+.+|+..+-.+ =+++|
T Consensus 66 ~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~---~l~~~y~v~~iPt~--vlId~ 121 (146)
T cd03008 66 LALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRR---ELEAQFSVEELPTV--VVLKP 121 (146)
T ss_pred EEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHH---HHHHHcCCCCCCEE--EEECC
Confidence 4556888888888999999999988777665543222 34455665444333 34454
No 115
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=22.79 E-value=1.8e+02 Score=27.19 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=20.0
Q ss_pred CccchHHHHHHHHhC-CCcEEeecCCCCCC
Q 023663 27 TVNISTGASILAAAC-GAKVAKQGSRSSSS 55 (279)
Q Consensus 27 t~nis~~aA~vlA~~-G~~V~kHG~~~~~~ 55 (279)
.+++-.+..+ -+.. ++|.++||+.+.+.
T Consensus 202 ~Ld~d~L~~I-~~~~~~vPLVLHGgSg~~~ 230 (321)
T PRK07084 202 PLRFDILEEI-EKRIPGFPIVLHGSSSVPQ 230 (321)
T ss_pred ccCHHHHHHH-HHhcCCCCEEEeCCCCCcH
Confidence 5677766654 3445 79999999987653
No 116
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=22.68 E-value=58 Score=29.24 Aligned_cols=32 Identities=31% Similarity=0.382 Sum_probs=22.8
Q ss_pred ceeeCCCCCCCCCccchHH-HHHHHHhCCCcEEee
Q 023663 15 VDIVGTGGDGANTVNISTG-ASILAAACGAKVAKQ 48 (279)
Q Consensus 15 ~D~~gtggdG~~t~nis~~-aA~vlA~~G~~V~kH 48 (279)
|=|||-||.|+.| ++++ +.-+++..|+.|+--
T Consensus 3 IaI~GKGG~GKTt--iaalll~~l~~~~~~~VLvV 35 (255)
T COG3640 3 IAITGKGGVGKTT--IAALLLKRLLSKGGYNVLVV 35 (255)
T ss_pred EEEecCCCccHHH--HHHHHHHHHHhcCCceEEEE
Confidence 4589999999987 5555 445556666888843
No 117
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=22.44 E-value=2.6e+02 Score=25.76 Aligned_cols=108 Identities=10% Similarity=0.044 Sum_probs=65.2
Q ss_pred HHHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCCCCCCHHHHHH---HHHhc--CeEE----E--eCCccChhhhchHH
Q 023663 35 SILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR---CVDEA--GIGF----M--MSTKYHPAMKFVRP 103 (279)
Q Consensus 35 A~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~s~~~~~~---~l~~~--g~~f----l--~~~~~~P~l~~l~~ 103 (279)
.-.+.++|..++.|+-.. +..+++.+. -..+.++..+ .+.+. |+.+ | +-+..---...+..
T Consensus 159 l~~l~~aG~dv~~hnlEt------~~~l~~~vr--r~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGlGETeee~~etl~~ 230 (302)
T TIGR00510 159 LDILLDAPPDVYNHNLET------VERLTPFVR--PGATYRWSLKLLERAKEYLPNLPTKSGIMVGLGETNEEIKQTLKD 230 (302)
T ss_pred HHHHHHcCchhhcccccc------hHHHHHHhC--CCCCHHHHHHHHHHHHHhCCCCeecceEEEECCCCHHHHHHHHHH
Confidence 334455666666665432 234556554 2345554332 23333 3322 1 12444333444444
Q ss_pred HHhhhCCCChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHcCCCe
Q 023663 104 VRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKR 153 (279)
Q Consensus 104 lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lG~~~ 153 (279)
+| ++|+ -.=++++-+.|.....-|.-+.+|+-.+.+.+.+..+|++.
T Consensus 231 Lr-elg~--d~v~igqYl~p~~~~~~v~~~~~p~~f~~~~~~a~~~gf~~ 277 (302)
T TIGR00510 231 LR-DHGV--TMVTLGQYLRPSRRHLPVKRYVSPEEFDYYRSVALEMGFLH 277 (302)
T ss_pred HH-hcCC--CEEEeecccCCCCCCCccccCCCHHHHHHHHHHHHHcCChh
Confidence 44 4454 33467889999988999999999999999999999999964
No 118
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=22.08 E-value=7.2e+02 Score=24.35 Aligned_cols=130 Identities=16% Similarity=0.174 Sum_probs=81.9
Q ss_pred CcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCC---ccc-------------HHHHHHHcCCCCC-----
Q 023663 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSS---ACG-------------SADVLEALGVVID----- 71 (279)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~---~~G-------------s~dvLe~LGi~~~----- 71 (279)
..+=++|.|-+ ...+|.-|+..|+.|..+++..... .+| -.++|+..|+.+.
T Consensus 124 ~~VaviGaGPA-------Gl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~v 196 (457)
T COG0493 124 KKVAVIGAGPA-------GLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRV 196 (457)
T ss_pred CEEEEECCCch-------HhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceE
Confidence 44556665543 4557999999999999999987543 133 3567788887443
Q ss_pred ---CCHHHHHHHHHhcCeEEEeC---------------CccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEEe
Q 023663 72 ---LDPEGVRRCVDEAGIGFMMS---------------TKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGV 133 (279)
Q Consensus 72 ---~s~~~~~~~l~~~g~~fl~~---------------~~~~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv 133 (279)
.+.++..+.+ -.+|+.. +..++++..|..++++... .... .+...+.+-+..|+|.
T Consensus 197 G~~it~~~L~~e~---Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~-~~~~--~~~~~~~gk~vvVIGg 270 (457)
T COG0493 197 GRDITLEELLKEY---DAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLG-DFAE--DRTPPAKGKRVVVIGG 270 (457)
T ss_pred CCcCCHHHHHHhh---CEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhc-cccc--ccCCCCCCCeEEEECC
Confidence 4445554444 4555533 4677788888888754432 1111 1222333467889999
Q ss_pred eChhhHHHHHHHHHHcCCCeEEEE
Q 023663 134 YNENLVLKMANALQRFGLKRALVV 157 (279)
Q Consensus 134 ~h~~~~~~~~~~~~~lG~~~alvv 157 (279)
-.-++.-. .....+|.+++.++
T Consensus 271 G~Ta~D~~--~t~~r~Ga~~v~~~ 292 (457)
T COG0493 271 GDTAMDCA--GTALRLGAKSVTCF 292 (457)
T ss_pred CCCHHHHH--HHHhhcCCeEEEEe
Confidence 88775433 55677888777777
No 119
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=21.77 E-value=4.4e+02 Score=24.55 Aligned_cols=29 Identities=14% Similarity=0.366 Sum_probs=19.3
Q ss_pred ChhhHHHHHHHHHHcCCCeEEEEecCCcccc
Q 023663 135 NENLVLKMANALQRFGLKRALVVHSEGLDEM 165 (279)
Q Consensus 135 h~~~~~~~~~~~~~lG~~~alvv~GeG~dE~ 165 (279)
+......+.+.++..|++ +|+.|++.||.
T Consensus 145 ~~~~~~~l~~~A~~~gi~--~Il~G~~~dE~ 173 (343)
T TIGR03573 145 DHAIFASVYQVALKFNIP--LIIWGENIAEE 173 (343)
T ss_pred hhHHHHHHHHHHHHhCCC--EEEeCCCHHHh
Confidence 334455666777777874 77888776654
No 120
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=21.76 E-value=84 Score=21.81 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=18.7
Q ss_pred HHHHHHHhcCeEEEeCCccChhh
Q 023663 76 GVRRCVDEAGIGFMMSTKYHPAM 98 (279)
Q Consensus 76 ~~~~~l~~~g~~fl~~~~~~P~l 98 (279)
+++..|.+.||-|++.|.-..+-
T Consensus 14 E~A~~La~~GIRFVpiPv~~dee 36 (61)
T PF07131_consen 14 EMAHSLAHIGIRFVPIPVVTDEE 36 (61)
T ss_pred HHHHHHHHcCceeeccccccHHH
Confidence 45668999999999999876664
No 121
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=21.57 E-value=1.2e+02 Score=27.54 Aligned_cols=36 Identities=11% Similarity=0.143 Sum_probs=23.8
Q ss_pred eeCCCCCC-CCCccchHHHHHHHHhCCCcEEeecCCCCC
Q 023663 17 IVGTGGDG-ANTVNISTGASILAAACGAKVAKQGSRSSS 54 (279)
Q Consensus 17 ~~gtggdG-~~t~nis~~aA~vlA~~G~~V~kHG~~~~~ 54 (279)
++| -|.+ ...+++-.+.-+- ...++|.++||+.+.+
T Consensus 172 ~HG-~Y~~~~p~L~~~~L~~i~-~~~~vPLVlHGgSG~~ 208 (276)
T cd00947 172 SHG-AYKGGEPKLDFDRLKEIA-ERVNVPLVLHGGSGIP 208 (276)
T ss_pred ccc-ccCCCCCccCHHHHHHHH-HHhCCCEEEeCCCCCC
Confidence 345 5655 4477777665554 4448999999996544
No 122
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=21.28 E-value=71 Score=19.58 Aligned_cols=31 Identities=29% Similarity=0.265 Sum_probs=25.3
Q ss_pred HHHHHHHHHHcccCCCHHHHHHHHHHHHHcc
Q 023663 229 ILNAAAALLVSCKVNTLAEGVALAREIQLSG 259 (279)
Q Consensus 229 ~~naa~~L~~~g~~~~~~eg~~~A~~~l~sG 259 (279)
.+|=|-+|.-+...+++++|+.+-+++++++
T Consensus 4 ~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~~~ 34 (35)
T PF14852_consen 4 QFNYAWGLVKSNNREDQQEGIALLEELYRDE 34 (35)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHCCCS
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 4677888888887788999999998887654
No 123
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=21.27 E-value=1.3e+02 Score=27.70 Aligned_cols=33 Identities=9% Similarity=0.071 Sum_probs=23.2
Q ss_pred CCCCCCCccchHHHHHHHHhCCCcEEeecCCCCC
Q 023663 21 GGDGANTVNISTGASILAAACGAKVAKQGSRSSS 54 (279)
Q Consensus 21 ggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~ 54 (279)
-|.+...+++-.+..+ -+..++|.++||+.+.+
T Consensus 182 ~Y~~~p~Ldfd~l~~I-~~~~~vPLVLHGgSG~~ 214 (286)
T PRK12738 182 LYSKTPKIDFQRLAEI-REVVDVPLVLHGASDVP 214 (286)
T ss_pred CCCCCCcCCHHHHHHH-HHHhCCCEEEeCCCCCC
Confidence 4555446777766655 44569999999997755
No 124
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=21.25 E-value=3.2e+02 Score=24.04 Aligned_cols=91 Identities=16% Similarity=0.248 Sum_probs=53.1
Q ss_pred cCCCCCCCHHHHHHHHHhcCeEEEeC--CccChhhh-chHH------HHhhhCCCChhhhhhhccCCCCCCceEEEeeCh
Q 023663 66 LGVVIDLDPEGVRRCVDEAGIGFMMS--TKYHPAMK-FVRP------VRKKLKVKTVFNILGPMLNPACVPFAVVGVYNE 136 (279)
Q Consensus 66 LGi~~~~s~~~~~~~l~~~g~~fl~~--~~~~P~l~-~l~~------lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~ 136 (279)
+|+|-..++.+..+.|++.|.-++.. |.--|.+. ..++ ++.-..++-.+..+..+-+-.+.+..++++++|
T Consensus 8 ~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~ 87 (242)
T cd04724 8 AGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNP 87 (242)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCH
Confidence 46666566777888888888888766 33333332 1211 222222234555555554433445678888887
Q ss_pred hhH---HHHHHHHHHcCCCeEEEE
Q 023663 137 NLV---LKMANALQRFGLKRALVV 157 (279)
Q Consensus 137 ~~~---~~~~~~~~~lG~~~alvv 157 (279)
-|. +.+.+.++..|.+ .+++
T Consensus 88 ~~~~G~~~fi~~~~~aG~~-giii 110 (242)
T cd04724 88 ILQYGLERFLRDAKEAGVD-GLII 110 (242)
T ss_pred HHHhCHHHHHHHHHHCCCc-EEEE
Confidence 444 6677777888884 5666
No 125
>PRK11670 antiporter inner membrane protein; Provisional
Probab=21.15 E-value=63 Score=30.63 Aligned_cols=31 Identities=32% Similarity=0.444 Sum_probs=24.6
Q ss_pred eCCCCCCCCCccchHHHHHHHHhCCCcEEeecC
Q 023663 18 VGTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (279)
Q Consensus 18 ~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~ 50 (279)
.|-||.|+.| ++.-.|..||+.|.+|..-=.
T Consensus 114 S~KGGVGKTT--~avNLA~aLA~~G~rVlLID~ 144 (369)
T PRK11670 114 SGKGGVGKSS--TAVNLALALAAEGAKVGILDA 144 (369)
T ss_pred CCCCCCCHHH--HHHHHHHHHHHCCCcEEEEeC
Confidence 5669999997 566778889999999986543
No 126
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=21.09 E-value=67 Score=24.27 Aligned_cols=25 Identities=40% Similarity=0.412 Sum_probs=18.2
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEE
Q 023663 17 IVGTGGDGANTVNISTGASILAAACGAKVA 46 (279)
Q Consensus 17 ~~gtggdG~~t~nis~~aA~vlA~~G~~V~ 46 (279)
++|++|.|+. |++..+....|++++
T Consensus 4 I~G~~gsGKS-----T~a~~La~~~~~~~i 28 (121)
T PF13207_consen 4 ISGPPGSGKS-----TLAKELAERLGFPVI 28 (121)
T ss_dssp EEESTTSSHH-----HHHHHHHHHHTCEEE
T ss_pred EECCCCCCHH-----HHHHHHHHHHCCeEE
Confidence 6788888874 566666666788876
No 127
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=20.85 E-value=3.3e+02 Score=25.48 Aligned_cols=71 Identities=20% Similarity=0.141 Sum_probs=41.8
Q ss_pred hHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHc---CCCCCC-----C---HHHHHHHHHhcC-----eEEEeCCcc
Q 023663 31 STGASILAAACGAKVAKQGSRSSSSACGSADVLEAL---GVVIDL-----D---PEGVRRCVDEAG-----IGFMMSTKY 94 (279)
Q Consensus 31 s~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~L---Gi~~~~-----s---~~~~~~~l~~~g-----~~fl~~~~~ 94 (279)
...++=.+...|+++.|-|++.++. .++|+++ |-|+-+ + ++.+.+.+.+.| ++.|.-...
T Consensus 98 d~~svd~l~~~~v~~~KIaS~~~~n----~pLL~~~A~~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~ 173 (329)
T TIGR03569 98 DLESADFLEDLGVPRFKIPSGEITN----APLLKKIARFGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTE 173 (329)
T ss_pred CHHHHHHHHhcCCCEEEECcccccC----HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCC
Confidence 4556667788999999999988764 4455544 444322 3 445556666654 667655444
Q ss_pred ChhhhchHHHH
Q 023663 95 HPAMKFVRPVR 105 (279)
Q Consensus 95 ~P~l~~l~~lR 105 (279)
.|.-..-.+||
T Consensus 174 YP~~~~~~nL~ 184 (329)
T TIGR03569 174 YPAPFEDVNLN 184 (329)
T ss_pred CCCCcccCCHH
Confidence 45443333333
No 128
>PF15516 BpuSI_N: BpuSI N-terminal domain
Probab=20.81 E-value=86 Score=25.62 Aligned_cols=28 Identities=29% Similarity=0.433 Sum_probs=23.5
Q ss_pred EEeeChhhHHHHHHHHHHcCCCe-EEEEe
Q 023663 131 VGVYNENLVLKMANALQRFGLKR-ALVVH 158 (279)
Q Consensus 131 ~Gv~h~~~~~~~~~~~~~lG~~~-alvv~ 158 (279)
+|+|||....-..++|..+|.+. .=++|
T Consensus 8 V~~fHPicksAlnqAL~~~GLd~~yeviH 36 (159)
T PF15516_consen 8 VSVFHPICKSALNQALKNLGLDTQYEVIH 36 (159)
T ss_pred cccccHHHHHHHHHHHHHcCCccceeEEE
Confidence 59999999999999999999763 34555
No 129
>PRK01184 hypothetical protein; Provisional
Probab=20.58 E-value=3.2e+02 Score=22.31 Aligned_cols=15 Identities=33% Similarity=0.189 Sum_probs=9.8
Q ss_pred CCHHHHHHHHHHHHH
Q 023663 243 NTLAEGVALAREIQL 257 (279)
Q Consensus 243 ~~~~eg~~~A~~~l~ 257 (279)
.++++..+.+++.|+
T Consensus 163 ~~~~~l~~~v~~~~~ 177 (184)
T PRK01184 163 STLEEFRARVRKLLE 177 (184)
T ss_pred CCHHHHHHHHHHHHH
Confidence 467777777766653
No 130
>PHA02518 ParA-like protein; Provisional
Probab=20.44 E-value=65 Score=26.98 Aligned_cols=30 Identities=30% Similarity=0.326 Sum_probs=21.8
Q ss_pred CCCCCCCCccchHHHHHHHHhCCCcEEeecCC
Q 023663 20 TGGDGANTVNISTGASILAAACGAKVAKQGSR 51 (279)
Q Consensus 20 tggdG~~t~nis~~aA~vlA~~G~~V~kHG~~ 51 (279)
-||.|+.| ++...|-.+|+.|.+|+.-=.+
T Consensus 9 KGGvGKTT--~a~~la~~la~~g~~vlliD~D 38 (211)
T PHA02518 9 KGGAGKTT--VATNLASWLHADGHKVLLVDLD 38 (211)
T ss_pred CCCCCHHH--HHHHHHHHHHhCCCeEEEEeCC
Confidence 48899987 3445566788899999965443
No 131
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=20.40 E-value=3e+02 Score=19.87 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=29.1
Q ss_pred HHHHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCCCC-C--C----HHHHHHHHHhcCeEEE
Q 023663 34 ASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID-L--D----PEGVRRCVDEAGIGFM 89 (279)
Q Consensus 34 aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~-~--s----~~~~~~~l~~~g~~fl 89 (279)
.+--+++.|+++. +..|+++.|+.-|+++. . . ...+.+.+.+..+.++
T Consensus 5 ~~~~l~~lG~~i~--------AT~gTa~~L~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~V 59 (90)
T smart00851 5 LAKRLAELGFELV--------ATGGTAKFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLV 59 (90)
T ss_pred HHHHHHHCCCEEE--------EccHHHHHHHHCCCcceeccCCCCCCCHHHHHHhcCCCeEEE
Confidence 3444667777776 33457788888887653 1 1 1236666666666655
No 132
>PRK10037 cell division protein; Provisional
Probab=20.32 E-value=59 Score=28.59 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=20.5
Q ss_pred CCCCCCCccchHHHHHHHHhCCCcEEee
Q 023663 21 GGDGANTVNISTGASILAAACGAKVAKQ 48 (279)
Q Consensus 21 ggdG~~t~nis~~aA~vlA~~G~~V~kH 48 (279)
||.|+.| .+.-.|..||..|.+|+.-
T Consensus 11 GGvGKTT--~a~nLA~~La~~G~rVLlI 36 (250)
T PRK10037 11 GGVGTTS--ITAALAWSLQMLGENVLVI 36 (250)
T ss_pred CCccHHH--HHHHHHHHHHhcCCcEEEE
Confidence 8999986 3555666788999999965
No 133
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=20.26 E-value=74 Score=27.46 Aligned_cols=29 Identities=34% Similarity=0.514 Sum_probs=22.3
Q ss_pred eCCCCCCCCCccchHHHHHHHHhCCCcEEee
Q 023663 18 VGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (279)
Q Consensus 18 ~gtggdG~~t~nis~~aA~vlA~~G~~V~kH 48 (279)
.+-||.|+.| ++.-.|..+|..|.+|+.-
T Consensus 7 ~~KGGvGKTt--~a~~LA~~la~~g~~Vlli 35 (251)
T TIGR01969 7 SGKGGTGKTT--ITANLGVALAKLGKKVLAL 35 (251)
T ss_pred cCCCCCcHHH--HHHHHHHHHHHCCCeEEEE
Confidence 3558999987 4555777788999999874
No 134
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.23 E-value=5.8e+02 Score=22.61 Aligned_cols=98 Identities=18% Similarity=0.283 Sum_probs=64.5
Q ss_pred hHHHHHHHHhCCCcEEeecCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHHhcCeEEEeCCccChhhhchHHHHhhhCC
Q 023663 31 STGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKV 110 (279)
Q Consensus 31 s~~aA~vlA~~G~~V~kHG~~~~~~~~Gs~dvLe~LGi~~~~s~~~~~~~l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~ 110 (279)
+--+|+.||..|+-|..-|=.+-+ +....|+ -.++++.+++.+ ..|.+.|+..-+-.|| .||.
T Consensus 56 t~~aAl~Lada~vdvI~Y~CtsgS-------~i~G~~~-----d~ei~~~ie~~~----~v~vvTts~Avv~aL~-al~a 118 (238)
T COG3473 56 TERAALELADAGVDVIVYGCTSGS-------LIGGPGY-----DKEIAQRIEEAK----GVPVVTTSTAVVEALN-ALGA 118 (238)
T ss_pred HHHHHHhcCccccCEEEEecccee-------eecCCch-----hHHHHHHHHhcc----CCceeechHHHHHHHH-hhCc
Confidence 445888999999988876543322 2223333 345666666665 5788888887777775 5776
Q ss_pred CChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHcCCCeEEEEecCC
Q 023663 111 KTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEG 161 (279)
Q Consensus 111 Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lG~~~alvv~GeG 161 (279)
|.+ -++.| |-.+.-+++.+.+..-|++ .+=++|=|
T Consensus 119 ~ri-----~vlTP----------Y~~evn~~e~ef~~~~Gfe-iv~~~~Lg 153 (238)
T COG3473 119 QRI-----SVLTP----------YIDEVNQREIEFLEANGFE-IVDFKGLG 153 (238)
T ss_pred ceE-----EEecc----------chhhhhhHHHHHHHhCCeE-EEEeeccC
Confidence 665 33344 5567788889999999994 55555534
No 135
>PF04227 Indigoidine_A: Indigoidine synthase A like protein; InterPro: IPR007342 Members of this entry catalyze the hydrolysis of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil. It is also reported to be involved in the synthesis of indigoidine, which is a blue pigment synthesised by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 1VKM_C.
Probab=20.18 E-value=2.3e+02 Score=26.13 Aligned_cols=116 Identities=24% Similarity=0.271 Sum_probs=59.2
Q ss_pred eCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCccc------HHHHHHHc---------CCCCCCCHHHHHHHHH
Q 023663 18 VGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACG------SADVLEAL---------GVVIDLDPEGVRRCVD 82 (279)
Q Consensus 18 ~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~G------s~dvLe~L---------Gi~~~~s~~~~~~~l~ 82 (279)
+..|.+|..| -.+.++++..+|++|+-.|+=+==++.+ |+|+-|-= |+..=++.....+.|+
T Consensus 89 ~a~~~~GaTT---VsaTm~lA~~aGI~VfaTGGiGGVHrga~~t~DiSaDL~eL~rtpv~VV~aG~KsILDi~~TLE~LE 165 (293)
T PF04227_consen 89 LAKGLSGATT---VSATMILAHLAGIKVFATGGIGGVHRGAEETFDISADLTELARTPVAVVCAGAKSILDIPKTLEYLE 165 (293)
T ss_dssp HHHT--EEE----HHHHHHHHHHTT--EEE-S-B--B-TT---SS-B-HHHHHHTTS-EEEEESBB-TTS-HHHHHHHHH
T ss_pred HhCCCccHhH---HHHHHHHHHHcCCCEEEeCCcccCCCCCcCcchhhhHHHHHhcCCceEEEccCcchhchHHHHHHhh
Confidence 3446666665 3345667777899999988744222221 78876642 5555678899999999
Q ss_pred hcCeEEEeC-CccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEEeeChhhHHHHHHHHHHcCCCeEEEEe
Q 023663 83 EAGIGFMMS-TKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (279)
Q Consensus 83 ~~g~~fl~~-~~~~P~l~~l~~lR~~lg~Rt~~n~l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lG~~~alvv~ 158 (279)
.+|+..+.- .+..|+++. +.-|++.. + -+.+++-...+..+-..+|.+..++|-
T Consensus 166 T~GV~Vvgy~t~~fPaFy~-----~~Sg~~~~--------------~---~~d~~~e~A~~~~~~~~lgl~~g~lva 220 (293)
T PF04227_consen 166 TQGVPVVGYGTDEFPAFYT-----RSSGFKSP--------------Y---RVDSPEEAARIIRAHWQLGLPSGVLVA 220 (293)
T ss_dssp HTT--EEEES-SB--BTTB-----S--S-B--------------------EE-SHHHHHHHHHHHHHTT--SEEEEE
T ss_pred cCCeEEEEecCCCCCeeec-----cCCCCCCC--------------c---ccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 999987744 677787743 12232221 1 345666666666777788888777774
No 136
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=20.18 E-value=3.4e+02 Score=20.35 Aligned_cols=49 Identities=10% Similarity=0.168 Sum_probs=29.5
Q ss_pred CCceEEEee----ChhhHHHHHHHHHHcCCCeEEEEe-cCCcccccccCceEEEE
Q 023663 126 VPFAVVGVY----NENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILD 175 (279)
Q Consensus 126 ~~~~v~Gv~----h~~~~~~~~~~~~~lG~~~alvv~-GeG~dE~sp~~~t~v~~ 175 (279)
.+..|||+| ||+| ..+..++..+.-+....|. |+=.....+.+.+.++.
T Consensus 16 ~kr~iIgYF~~~~~~eY-~~f~kvA~~lr~dC~F~v~~G~~~~~~~~~~~~~i~f 69 (91)
T cd03070 16 SKRNIIGYFESKDSDEY-DNFRKVANILRDDCSFLVGFGDVTKPERPPGDNIIYF 69 (91)
T ss_pred CCceEEEEEcCCCChhH-HHHHHHHHHHhhcCeEEEEeccccccccCCCCCeEEE
Confidence 678899999 5666 4556666667655555443 54333344555555544
No 137
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=20.05 E-value=1.2e+02 Score=28.28 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=34.8
Q ss_pred CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCccc
Q 023663 12 GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACG 58 (279)
Q Consensus 12 ~~~~D~~gtggdG~~t~nis~~aA~vlA~~G~~V~kHG~~~~~~~~G 58 (279)
..+|-|.|+||.|++| ..-....-+...|.+|..---+..+++.|
T Consensus 51 a~viGITG~PGaGKST--li~~L~~~l~~~G~rVaVlAVDPSSp~TG 95 (323)
T COG1703 51 AHVIGITGVPGAGKST--LIEALGRELRERGHRVAVLAVDPSSPFTG 95 (323)
T ss_pred CcEEEecCCCCCchHH--HHHHHHHHHHHCCcEEEEEEECCCCCCCC
Confidence 4579999999999986 33445556688999999888887777654
Done!