Query 023664
Match_columns 279
No_of_seqs 238 out of 826
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 05:43:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023664.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023664hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1616 Protein involved in Sn 100.0 9.7E-52 2.1E-56 385.4 18.0 234 40-279 28-289 (289)
2 PF04739 AMPKBI: 5'-AMP-activa 100.0 4.1E-34 8.9E-39 229.7 5.5 84 192-277 2-100 (100)
3 cd02859 AMPKbeta_GBD_like AMP- 99.9 4.6E-26 9.9E-31 174.8 10.1 79 94-172 1-79 (79)
4 cd02861 E_set_proteins_like E 99.8 2E-18 4.2E-23 132.6 9.9 76 95-171 2-81 (82)
5 cd02858 Esterase_N_term Estera 99.0 1.3E-09 2.8E-14 84.5 8.7 74 97-171 8-84 (85)
6 cd02688 E_set E or "early" set 98.6 1.4E-07 3E-12 69.8 8.0 70 96-165 5-77 (83)
7 PF02922 CBM_48: Carbohydrate- 98.2 4.4E-06 9.5E-11 63.3 5.7 55 97-151 14-74 (85)
8 cd02854 Glycogen_branching_enz 98.1 9.5E-06 2.1E-10 65.0 6.9 62 97-158 8-83 (99)
9 PF00686 CBM_20: Starch bindin 97.5 0.0004 8.7E-09 54.4 6.9 53 95-147 2-68 (96)
10 cd02860 Pullulanase_N_term Pul 97.4 0.00071 1.5E-08 53.3 7.7 63 97-161 10-85 (100)
11 cd05808 CBM20_alpha_amylase Al 97.4 0.0011 2.5E-08 51.3 8.1 44 104-147 13-63 (95)
12 cd05818 CBM20_water_dikinase P 97.3 0.0017 3.7E-08 51.0 8.6 53 95-147 2-61 (92)
13 cd05814 CBM20_Prei4 Prei4, N-t 97.2 0.0018 3.9E-08 53.1 8.0 45 104-148 14-67 (120)
14 cd05809 CBM20_beta_amylase Bet 97.0 0.0049 1.1E-07 48.9 8.5 54 94-147 2-68 (99)
15 cd05820 CBM20_novamyl Novamyl 97.0 0.0084 1.8E-07 48.0 9.8 54 94-147 2-70 (103)
16 cd02855 Glycogen_branching_enz 96.9 0.0087 1.9E-07 46.7 8.8 50 98-148 25-78 (106)
17 cd05813 CBM20_genethonin_1 Gen 96.7 0.0053 1.1E-07 48.0 6.4 52 96-147 2-62 (95)
18 COG0296 GlgB 1,4-alpha-glucan 96.7 0.0024 5.1E-08 66.2 5.6 58 98-156 40-106 (628)
19 PLN02447 1,4-alpha-glucan-bran 96.7 0.0032 6.9E-08 66.6 6.4 59 97-156 117-189 (758)
20 cd02856 Glycogen_debranching_e 96.6 0.0077 1.7E-07 47.8 6.5 52 97-150 11-67 (103)
21 cd05811 CBM20_glucoamylase Glu 96.6 0.0094 2E-07 47.4 7.0 55 93-147 5-73 (106)
22 cd05816 CBM20_DPE2_repeat2 Dis 96.5 0.024 5.3E-07 44.8 8.7 44 104-147 13-64 (99)
23 cd05807 CBM20_CGTase CGTase, C 96.4 0.022 4.9E-07 45.1 8.0 54 94-147 2-70 (101)
24 PRK12568 glycogen branching en 96.3 0.0078 1.7E-07 63.5 6.7 61 97-158 140-209 (730)
25 PRK14705 glycogen branching en 96.3 0.0072 1.6E-07 66.9 6.4 49 99-148 643-695 (1224)
26 PRK12313 glycogen branching en 96.2 0.012 2.6E-07 60.8 7.1 56 97-152 40-101 (633)
27 cd05467 CBM20 The family 20 ca 96.1 0.023 4.9E-07 43.8 6.6 45 103-147 11-65 (96)
28 cd02852 Isoamylase_N_term Isoa 96.0 0.018 3.9E-07 46.7 6.0 56 97-154 9-75 (119)
29 cd05817 CBM20_DSP Dual-specifi 96.0 0.032 7E-07 44.2 7.1 45 103-147 11-62 (100)
30 cd05810 CBM20_alpha_MTH Glucan 95.9 0.03 6.5E-07 44.4 6.6 44 104-147 14-64 (97)
31 PRK14706 glycogen branching en 95.8 0.016 3.4E-07 60.4 6.1 52 97-149 40-95 (639)
32 PRK05402 glycogen branching en 95.5 0.033 7.2E-07 58.6 7.2 55 97-151 133-194 (726)
33 cd05815 CBM20_DPE2_repeat1 Dis 95.1 0.23 5.1E-06 39.1 9.1 50 98-147 5-65 (101)
34 PRK05402 glycogen branching en 95.1 0.037 8E-07 58.2 5.8 53 97-151 31-87 (726)
35 PF03423 CBM_25: Carbohydrate 95.0 0.13 2.8E-06 40.2 7.4 54 96-149 3-70 (87)
36 TIGR02402 trehalose_TreZ malto 94.8 0.12 2.5E-06 52.8 8.4 58 98-160 2-63 (542)
37 TIGR01515 branching_enzym alph 94.1 0.11 2.3E-06 53.8 6.5 61 97-158 31-100 (613)
38 cd05806 CBM20_laforin Laforin 93.9 0.53 1.1E-05 38.8 8.9 50 98-147 8-74 (112)
39 cd02853 MTHase_N_term Maltooli 92.6 0.32 6.9E-06 37.1 5.4 58 98-159 12-71 (85)
40 PLN02950 4-alpha-glucanotransf 91.3 1.2 2.7E-05 48.4 9.9 72 90-161 148-236 (909)
41 PLN02316 synthase/transferase 91.2 1.3 2.7E-05 49.0 9.9 82 89-174 323-419 (1036)
42 PLN02950 4-alpha-glucanotransf 90.8 1.6 3.5E-05 47.6 10.2 56 92-147 6-74 (909)
43 PLN02960 alpha-amylase 90.6 0.22 4.8E-06 53.8 3.4 52 97-148 131-198 (897)
44 PF11806 DUF3327: Domain of un 90.3 2.5 5.4E-05 35.1 8.8 81 96-176 3-115 (122)
45 PF01357 Pollen_allerg_1: Poll 89.9 1.1 2.4E-05 34.6 6.0 62 91-155 10-78 (82)
46 TIGR02104 pulA_typeI pullulana 89.2 0.95 2.1E-05 46.7 6.7 61 97-159 21-93 (605)
47 PLN02316 synthase/transferase 88.9 1.1 2.5E-05 49.3 7.3 61 95-155 154-227 (1036)
48 cd02857 CD_pullulan_degrading_ 87.5 4.7 0.0001 31.6 8.3 54 94-147 17-79 (116)
49 PRK10439 enterobactin/ferric e 85.1 3.4 7.3E-05 40.9 7.7 88 91-178 35-166 (411)
50 TIGR02100 glgX_debranch glycog 78.8 4.2 9.1E-05 43.0 6.0 53 97-151 16-75 (688)
51 TIGR02102 pullulan_Gpos pullul 74.1 12 0.00027 41.8 8.2 61 98-158 331-406 (1111)
52 PLN03244 alpha-amylase; Provis 72.5 3.4 7.4E-05 44.6 3.4 45 95-139 132-185 (872)
53 PF02903 Alpha-amylase_N: Alph 72.5 20 0.00043 28.9 7.2 65 92-156 20-99 (120)
54 PRK03705 glycogen debranching 68.6 12 0.00026 39.5 6.4 53 97-151 21-78 (658)
55 COG3794 PetE Plastocyanin [Ene 68.5 15 0.00032 31.1 5.7 50 94-145 61-112 (128)
56 TIGR02103 pullul_strch alpha-1 60.9 20 0.00042 39.4 6.4 76 97-174 138-228 (898)
57 PRK14510 putative bifunctional 59.2 16 0.00034 41.3 5.5 53 97-151 25-84 (1221)
58 PF03370 CBM_21: Putative phos 51.7 54 0.0012 26.5 6.2 60 93-152 19-101 (113)
59 PRK10785 maltodextrin glucosid 48.9 91 0.002 32.4 8.7 58 93-150 19-87 (598)
60 COG3397 Uncharacterized protei 47.7 1.1E+02 0.0023 29.7 8.2 70 96-174 115-206 (308)
61 KOG0045 Cytosolic Ca2+-depende 46.4 18 0.00039 38.0 3.2 27 136-162 114-143 (612)
62 KOG0470 1,4-alpha-glucan branc 44.9 15 0.00033 39.3 2.4 39 97-135 116-157 (757)
63 TIGR03009 plancto_dom_2 Planct 43.3 31 0.00068 31.5 3.9 17 145-161 66-85 (210)
64 PLN02877 alpha-amylase/limit d 41.9 50 0.0011 36.6 5.8 50 97-148 225-280 (970)
65 PF13473 Cupredoxin_1: Cupredo 40.6 65 0.0014 25.1 4.9 48 92-144 40-91 (104)
66 TIGR02657 amicyanin amicyanin. 40.2 62 0.0014 24.4 4.6 48 96-144 20-69 (83)
67 TIGR02375 pseudoazurin pseudoa 36.3 1.1E+02 0.0025 25.1 5.8 50 93-144 21-71 (116)
68 PF11896 DUF3416: Domain of un 35.8 1E+02 0.0022 27.5 5.9 54 93-155 41-100 (187)
69 TIGR03102 halo_cynanin halocya 32.3 1.3E+02 0.0028 24.7 5.6 49 94-144 49-99 (115)
70 PF03422 CBM_6: Carbohydrate b 31.7 51 0.0011 26.0 3.0 19 131-149 92-110 (125)
71 PF01491 Frataxin_Cyay: Fratax 27.6 60 0.0013 26.3 2.8 20 136-156 66-86 (109)
72 PF14347 DUF4399: Domain of un 27.5 91 0.002 24.5 3.7 32 127-159 50-81 (87)
73 smart00606 CBD_IV Cellulose Bi 26.6 81 0.0018 25.2 3.4 18 132-149 101-118 (129)
74 KOG1263 Multicopper oxidases [ 25.9 68 0.0015 33.5 3.4 35 128-162 98-137 (563)
75 PLN03023 Expansin-like B1; Pro 25.1 2.3E+02 0.0049 26.6 6.4 51 94-148 161-216 (247)
76 cd00503 Frataxin Frataxin is a 25.0 44 0.00096 27.1 1.5 19 137-156 65-83 (105)
77 PF14121 DUF4289: Domain of un 24.9 56 0.0012 34.0 2.7 41 229-269 494-535 (614)
78 TIGR03422 mito_frataxin fratax 24.7 51 0.0011 26.4 1.8 18 138-156 66-83 (97)
79 COG5227 SMT3 Ubiquitin-like pr 23.8 72 0.0016 25.9 2.5 26 140-165 62-87 (103)
80 COG1477 ApbE Membrane-associat 23.3 1.7E+02 0.0036 28.7 5.4 54 105-158 201-264 (337)
81 TIGR03503 conserved hypothetic 23.1 1.4E+02 0.003 29.8 4.8 40 109-150 152-195 (374)
82 PLN00115 pollen allergen group 22.2 3E+02 0.0066 22.9 6.0 52 101-154 43-98 (118)
83 PF07483 W_rich_C: Tryptophan- 22.1 2.8E+02 0.0061 22.8 5.7 55 96-154 22-77 (109)
84 PF10634 Iron_transport: Fe2+ 21.4 2.7E+02 0.0059 24.3 5.8 42 101-148 74-117 (151)
85 smart00230 CysPc Calpain-like 21.3 80 0.0017 30.0 2.7 26 135-160 97-125 (318)
86 PF00648 Peptidase_C2: Calpain 20.3 84 0.0018 29.1 2.6 22 138-159 87-111 (298)
87 PF08308 PEGA: PEGA domain; I 20.2 2.8E+02 0.0061 19.8 4.9 42 98-150 5-46 (71)
No 1
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.7e-52 Score=385.42 Aligned_cols=234 Identities=38% Similarity=0.632 Sum_probs=206.7
Q ss_pred CCCCCCCCCCCceeCCCCCcccccccccCCCCCcccchhhhccc-ccccCCCCCCceeEEEEeeCCCceEEEEecCCCCc
Q 023664 40 PPATPHRSRSPLLFAPQVRIRVPVAPLQRADDPPLFNQMRQHES-HAAASNPLEKGVPTIITWNYGGNEVAVEGSWDNWT 118 (279)
Q Consensus 40 pp~sp~~~~~p~~f~pq~~~~vpv~pl~r~~~~~~~~~~w~~~~-~~~~~~~~~~~vpv~f~W~~gg~~V~V~GSFnnW~ 118 (279)
.+...+.-....+++|+ -+..++.++.+..+.+..|.+.+ ..+.......+.||+|+|.++++.|||+|||+||+
T Consensus 28 ~~~~~~~~~~~~~~s~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~pvvi~W~~gg~~v~v~gS~~nWk 103 (289)
T KOG1616|consen 28 KPGSERKIPSNSGFSPD----DPDPPSTRDEKERIDEGSWSQSQTGEDNEKDREQGRPTVIRWSQGGKEVYVDGSFGNWK 103 (289)
T ss_pred CCCCccccccccccCCc----CCCCCcCcccccccccccccccccccccccccccCCceEEEecCCCceEEEeccccccc
Confidence 33334333333388999 99999999988888888887775 35566666789999999999999999999999999
Q ss_pred cceeeeecCCc---EEEEEECCCceEEEEEEEcCeeecCCCCCeeeCCCCCeEeEEEeccCc--hhhhcccccc------
Q 023664 119 SRRILHRSGKD---HSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDVHSCV--PEILDSVAEF------ 187 (279)
Q Consensus 119 ~~i~L~ks~~~---f~~~l~LppG~y~YKFiVDG~W~~dp~~P~~~D~~Gn~nNvl~V~~~~--pe~~~s~~~~------ 187 (279)
.+++|.++++. |++++.|++|.|+|||+|||+|++|+++|+++|..|++||+|+|.+.+ .+.++.+.++
T Consensus 104 ~~~~l~~~~~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta~d~~Gn~~N~i~v~~~~~v~~~~~~l~~~~~~~~~ 183 (289)
T KOG1616|consen 104 TKIPLVRSGKNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTAEDSLGNLNNILEVQDPDEVFEVFQALEEDLPSSNH 183 (289)
T ss_pred ccccceecCCCcccceeeEecCCceEEEEEecCCceecCCCCcccccccCCcccceEecCccccchhhhhhhhhcccccc
Confidence 99999998876 999999999999999999999999999999999999999999999988 8877777666
Q ss_pred ----cCCCCC-------CCCCccCCCCcCccCCC--CCCCChhhhcccCCCCCC---CCCCCCCCCeEeecceeeecccC
Q 023664 188 ----EAPASP-------ESSYSQALPSEEDYAKE--PLTVPSQLHLTLLGTENS---DEASSSKPKHVVLNHVFVDDGWK 251 (279)
Q Consensus 188 ----~~~~sp-------~~sY~~~~p~~~~~~~~--PP~LPp~L~~~iLN~~~~---d~~~Lp~P~HVvLNHLy~~si~~ 251 (279)
+.+..+ ..+|+|++|+.+++.+. ||.|||||.++|||+.+. |+..|++|+||+|||||+++|
T Consensus 184 ~~s~e~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~p~lpp~l~~v~lnk~~~~~~~~~~~~~p~hv~lnhl~~~si-- 261 (289)
T KOG1616|consen 184 SESSEVPNLPEELEAKPLGSYTQEKPAVEDEEKAMAPPVLPPHLLQVILNKDTQVSCDPALLPEPNHVALNHLYALSI-- 261 (289)
T ss_pred ccccccCCCccccccccccccccccchhhcchhcccCCCCCcchheeeccccccccccccccCCccchhhhhhhhhcc--
Confidence 444444 88999999998887766 999999999999999887 799999999999999999996
Q ss_pred CCceEEEeeeeEecceeEEEEEeeecCC
Q 023664 252 SKSVVALGLTHRFQSKYVTVVLYKPHKR 279 (279)
Q Consensus 252 ~~~vl~l~~T~Ryk~KyVTtvlYkp~~~ 279 (279)
|+++++|++||||++||||++||||+++
T Consensus 262 k~~~~~~~~~~r~~~k~vt~~lyk~~~~ 289 (289)
T KOG1616|consen 262 KDGVMVLSFTHRYKKKYVTTGLYKPLQL 289 (289)
T ss_pred CCCeeEecceecccccceeEEeeeeccC
Confidence 8999999999999999999999999975
No 2
>PF04739 AMPKBI: 5'-AMP-activated protein kinase beta subunit, interation domain; InterPro: IPR006828 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This interaction domain is found in the beta subunit of the 5-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex []. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known []. The isoamylase domain (IPR004193 from INTERPRO) is sometimes found associated with proteins that contain this C-terminal domain.; GO: 0005515 protein binding; PDB: 2QRE_D 2OOY_B 2OOX_B 2QRD_D 2QR1_D 2QRC_D 1Z0N_C 4EAK_B 4EAL_B 4EAG_B ....
Probab=100.00 E-value=4.1e-34 Score=229.67 Aligned_cols=84 Identities=51% Similarity=0.844 Sum_probs=63.4
Q ss_pred CCCCCCccCCCCc------------CccCCCCCCCChhhhcccCCCCCC---CCCCCCCCCeEeecceeeecccCCCceE
Q 023664 192 SPESSYSQALPSE------------EDYAKEPLTVPSQLHLTLLGTENS---DEASSSKPKHVVLNHVFVDDGWKSKSVV 256 (279)
Q Consensus 192 sp~~sY~~~~p~~------------~~~~~~PP~LPp~L~~~iLN~~~~---d~~~Lp~P~HVvLNHLy~~si~~~~~vl 256 (279)
+++++|++++|+. ++|+++||.||+||+++|||+... |++.|++|+||||||||+++| |++|+
T Consensus 2 ~p~~~ys~~iP~~~~~~~~~~~~~~~~~~~~PP~lPp~L~~~iLN~~~~~~~~~~~Lp~P~HV~LNHL~~~~i--k~~v~ 79 (100)
T PF04739_consen 2 SPESSYSSEIPENLQDDDEFEEQPEEEFAKEPPSLPPHLQKTILNKPSSSTDDPSVLPIPNHVVLNHLYTSSI--KDGVL 79 (100)
T ss_dssp -----EESS--HCCCSCCCCCHHH--TCCCS--BS-GGGCSEECCSCTCHHSHTTB-----GGGTTBEEEEEE--BTTEE
T ss_pred CCCcCccccCCccccchhhhhhhhcccccCCCCCCChhhCeeccCCCCcccCccccCCCCCEEEecceEEccc--CCCeE
Confidence 5788999999863 478999999999999999999965 699999999999999999997 89999
Q ss_pred EEeeeeEecceeEEEEEeeec
Q 023664 257 ALGLTHRFQSKYVTVVLYKPH 277 (279)
Q Consensus 257 ~l~~T~Ryk~KyVTtvlYkp~ 277 (279)
|+|+|||||+||||||||||+
T Consensus 80 al~~T~Ryk~KyVT~vlYkP~ 100 (100)
T PF04739_consen 80 ALGTTHRYKSKYVTTVLYKPI 100 (100)
T ss_dssp EEEEEEEETTEEEEEEEEEE-
T ss_pred EEEEEEEecceEEEEEEecCC
Confidence 999999999999999999996
No 3
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.93 E-value=4.6e-26 Score=174.79 Aligned_cols=79 Identities=53% Similarity=0.940 Sum_probs=75.4
Q ss_pred ceeEEEEeeCCCceEEEEecCCCCccceeeeecCCcEEEEEECCCceEEEEEEEcCeeecCCCCCeeeCCCCCeEeEEE
Q 023664 94 GVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLD 172 (279)
Q Consensus 94 ~vpv~f~W~~gg~~V~V~GSFnnW~~~i~L~ks~~~f~~~l~LppG~y~YKFiVDG~W~~dp~~P~~~D~~Gn~nNvl~ 172 (279)
.+||+|+|.+++++|+|+|||+||+..++|.|+++.|++++.||+|.|+|||+|||+|++|+++|++.|++|+.||+|+
T Consensus 1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~~~~~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~i~ 79 (79)
T cd02859 1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKSGKGFSATLRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNVID 79 (79)
T ss_pred CeEEEEEEcCCCcEEEEEEEcCCCCccccceECCCCcEEEEEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeeeEC
Confidence 3799999999999999999999999878999988779999999999999999999999999999999999999999985
No 4
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.77 E-value=2e-18 Score=132.56 Aligned_cols=76 Identities=32% Similarity=0.645 Sum_probs=68.5
Q ss_pred eeEEEEeeCCC-ceEEEEecCCCCccceeeeecC-CcEEEEEECCCceEEEEEEEcCeee-cCCCCCe-eeCCCCCeEeE
Q 023664 95 VPTIITWNYGG-NEVAVEGSWDNWTSRRILHRSG-KDHSILLVLPSGVYHYKFIVDGDWR-YIPDLPF-VADELGGVCNL 170 (279)
Q Consensus 95 vpv~f~W~~gg-~~V~V~GSFnnW~~~i~L~ks~-~~f~~~l~LppG~y~YKFiVDG~W~-~dp~~P~-~~D~~Gn~nNv 170 (279)
++++|+|.+.+ ++|+|+|+|++|+ ..+|.|.+ +.|++++.|++|.|+|||+|||.|. .||..+. ..|..|+.||+
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n~v 80 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMEREGDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKNAV 80 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCC-cccCEECCCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccceE
Confidence 57899999864 9999999999999 47999876 7899999999999999999999999 9999985 67888999998
Q ss_pred E
Q 023664 171 L 171 (279)
Q Consensus 171 l 171 (279)
|
T Consensus 81 ~ 81 (82)
T cd02861 81 F 81 (82)
T ss_pred c
Confidence 7
No 5
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.03 E-value=1.3e-09 Score=84.49 Aligned_cols=74 Identities=26% Similarity=0.330 Sum_probs=59.5
Q ss_pred EEEE-eeCCCceEEEEecCCCCccceeeeecC-CcEEEEEE-CCCceEEEEEEEcCeeecCCCCCeeeCCCCCeEeEE
Q 023664 97 TIIT-WNYGGNEVAVEGSWDNWTSRRILHRSG-KDHSILLV-LPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLL 171 (279)
Q Consensus 97 v~f~-W~~gg~~V~V~GSFnnW~~~i~L~ks~-~~f~~~l~-LppG~y~YKFiVDG~W~~dp~~P~~~D~~Gn~nNvl 171 (279)
++|+ |...+++|+|.|+|++|.. .+|.+.+ +.|++++. |.+|.|+|+|+|||.|+.||..+...-..+...|++
T Consensus 8 v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~~~~~~~~~ 84 (85)
T cd02858 8 VTFRLFAPKANEVQVRGSWGGAGS-HPMTKDEAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTKPGRQVDTSGV 84 (85)
T ss_pred EEEEEECCCCCEEEEEeecCCCcc-EeCeECCCeEEEEEECCCCCcEEEEEEEECCeEecCCCCCceeecccccceee
Confidence 4554 6678999999999998876 7898865 68999884 888999999999999999999997664445554443
No 6
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.65 E-value=1.4e-07 Score=69.77 Aligned_cols=70 Identities=23% Similarity=0.268 Sum_probs=56.8
Q ss_pred eEEEEeeC-CCceEEEEecCCCCccceeeeecC-CcEEEEEECCC-ceEEEEEEEcCeeecCCCCCeeeCCCC
Q 023664 96 PTIITWNY-GGNEVAVEGSWDNWTSRRILHRSG-KDHSILLVLPS-GVYHYKFIVDGDWRYIPDLPFVADELG 165 (279)
Q Consensus 96 pv~f~W~~-gg~~V~V~GSFnnW~~~i~L~ks~-~~f~~~l~Lpp-G~y~YKFiVDG~W~~dp~~P~~~D~~G 165 (279)
.+.|++.. .++.|.|.+.|++|...++|.+.. +.|++.+.+.. +.|.|+|+|||.|.+++.++...+...
T Consensus 5 ~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~ 77 (83)
T cd02688 5 GVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKVEDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKADEGGS 77 (83)
T ss_pred cEEEEEECCCCCEEEEEEEECCCCCcccCEECCCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhhhcCCc
Confidence 46677654 679999999999876678898764 68999999988 999999999999999988765554433
No 7
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.15 E-value=4.4e-06 Score=63.35 Aligned_cols=55 Identities=25% Similarity=0.497 Sum_probs=43.0
Q ss_pred EEEEeeCCCceEEEEecCCC-Cccc-eeeee--cCCcEEEEEE--CCCceEEEEEEEcCee
Q 023664 97 TIITWNYGGNEVAVEGSWDN-WTSR-RILHR--SGKDHSILLV--LPSGVYHYKFIVDGDW 151 (279)
Q Consensus 97 v~f~W~~gg~~V~V~GSFnn-W~~~-i~L~k--s~~~f~~~l~--LppG~y~YKFiVDG~W 151 (279)
+.=.|...+++|+|.+.|++ |... ++|.+ .++.|++.+. |++|.+.|+|.||+..
T Consensus 14 ~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 14 TFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp EEEEE-TTESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred EEEEECCCCCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence 33457789999999999999 8764 68984 4579999999 8889888899888654
No 8
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.10 E-value=9.5e-06 Score=64.99 Aligned_cols=62 Identities=21% Similarity=0.422 Sum_probs=44.8
Q ss_pred EEEEeeCCCceEEEEecCCCCccc-eeeeec-CCcEEEEEEC--------CCc-eEEEEEEE-cCeee--cCCCCC
Q 023664 97 TIITWNYGGNEVAVEGSWDNWTSR-RILHRS-GKDHSILLVL--------PSG-VYHYKFIV-DGDWR--YIPDLP 158 (279)
Q Consensus 97 v~f~W~~gg~~V~V~GSFnnW~~~-i~L~ks-~~~f~~~l~L--------ppG-~y~YKFiV-DG~W~--~dp~~P 158 (279)
+.-.|...+++|+|+|+||+|+.. .+|.|. .+.|++.+.. +.| .|+|++.. ||+|. .||-.-
T Consensus 8 ~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA~ 83 (99)
T cd02854 8 TYREWAPNAEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWIK 83 (99)
T ss_pred EEEEECCCCCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCccee
Confidence 344578899999999999999864 689885 4689998774 455 46666666 78763 555443
No 9
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.48 E-value=0.0004 Score=54.43 Aligned_cols=53 Identities=30% Similarity=0.554 Sum_probs=43.1
Q ss_pred eeEEEEeeC---CCceEEEEecCC---CCccc--eeeeecC-----CcEEEEEECCCc-eEEEEEEE
Q 023664 95 VPTIITWNY---GGNEVAVEGSWD---NWTSR--RILHRSG-----KDHSILLVLPSG-VYHYKFIV 147 (279)
Q Consensus 95 vpv~f~W~~---gg~~V~V~GSFn---nW~~~--i~L~ks~-----~~f~~~l~LppG-~y~YKFiV 147 (279)
+.|+|+-+. .|+.|+|+||.. +|+.. ++|.... ..|++.+.||.| .++|||++
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 556776643 689999999996 89974 6888742 589999999988 59999999
No 10
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.43 E-value=0.00071 Score=53.33 Aligned_cols=63 Identities=19% Similarity=0.136 Sum_probs=46.7
Q ss_pred EEE-EeeCCCceEEEEecCCCCc-----cceeeee-cCCcEEEEEE-CCCceEEEEEEEcCe-----eecCCCCCeee
Q 023664 97 TII-TWNYGGNEVAVEGSWDNWT-----SRRILHR-SGKDHSILLV-LPSGVYHYKFIVDGD-----WRYIPDLPFVA 161 (279)
Q Consensus 97 v~f-~W~~gg~~V~V~GSFnnW~-----~~i~L~k-s~~~f~~~l~-LppG~y~YKFiVDG~-----W~~dp~~P~~~ 161 (279)
+.| .|...+++|.|.. |++|. .+++|.+ .++.|++.+. +.+|.+ |+|.|||. ...||-.....
T Consensus 10 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~~~~~DPyA~~~~ 85 (100)
T cd02860 10 TTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGENGVWSVTLDGDLEGYY-YLYEVKVYKGETNEVVDPYAKALS 85 (100)
T ss_pred EEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCCCCEEEEEeCCccCCcE-EEEEEEEeceEEEEEcCcccEeEe
Confidence 445 6888899999998 88886 4578987 4578998876 455654 88888876 66777665443
No 11
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.37 E-value=0.0011 Score=51.30 Aligned_cols=44 Identities=32% Similarity=0.471 Sum_probs=36.5
Q ss_pred CCceEEEEec---CCCCccc--eeeeecC-CcEEEEEECCCc-eEEEEEEE
Q 023664 104 GGNEVAVEGS---WDNWTSR--RILHRSG-KDHSILLVLPSG-VYHYKFIV 147 (279)
Q Consensus 104 gg~~V~V~GS---FnnW~~~--i~L~ks~-~~f~~~l~LppG-~y~YKFiV 147 (279)
.|+.|+|+|+ +.+|+.. ++|...+ +.|++.+.||.+ .++|||++
T Consensus 13 ~ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~~~~~eYKy~~ 63 (95)
T cd05808 13 WGQNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPAGTAIEYKYIK 63 (95)
T ss_pred CCCEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCCCCeEEEEEEE
Confidence 5899999995 7799964 5787654 579999999987 69999997
No 12
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.31 E-value=0.0017 Score=50.96 Aligned_cols=53 Identities=25% Similarity=0.405 Sum_probs=42.9
Q ss_pred eeEEEEeeC---CCceEEEEecC---CCCccceeeeecCCcEEEEEECCCc-eEEEEEEE
Q 023664 95 VPTIITWNY---GGNEVAVEGSW---DNWTSRRILHRSGKDHSILLVLPSG-VYHYKFIV 147 (279)
Q Consensus 95 vpv~f~W~~---gg~~V~V~GSF---nnW~~~i~L~ks~~~f~~~l~LppG-~y~YKFiV 147 (279)
+.++|+-.. -|+.++|+|+- .+|++..+|.-..+.|++.+.|+.+ .++|||++
T Consensus 2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~~~~~W~~~~~l~~~~~ieyKy~~ 61 (92)
T cd05818 2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNWTENGWVCDLELDGGELVEYKFVI 61 (92)
T ss_pred EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCccccCCCCEEEEEEeCCCCcEEEEEEE
Confidence 345555543 58999999987 4899877887766789999999987 69999999
No 13
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.21 E-value=0.0018 Score=53.11 Aligned_cols=45 Identities=31% Similarity=0.566 Sum_probs=38.2
Q ss_pred CCceEEEEec---CCCCccc--eeeeec--C-CcEEEEEECCCc-eEEEEEEEc
Q 023664 104 GGNEVAVEGS---WDNWTSR--RILHRS--G-KDHSILLVLPSG-VYHYKFIVD 148 (279)
Q Consensus 104 gg~~V~V~GS---FnnW~~~--i~L~ks--~-~~f~~~l~LppG-~y~YKFiVD 148 (279)
.|+.|+|+|+ +.+|+.. .+|.+. . ..|++.+.||.+ .++|||++.
T Consensus 14 ~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~ 67 (120)
T cd05814 14 PGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVA 67 (120)
T ss_pred CCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEE
Confidence 5899999999 8899854 578775 3 579999999988 799999994
No 14
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=97.01 E-value=0.0049 Score=48.86 Aligned_cols=54 Identities=26% Similarity=0.427 Sum_probs=41.1
Q ss_pred ceeEEEEeeC----CCceEEEEe---cCCCCccce-eeee---c-CCcEEEEEECCCc-eEEEEEEE
Q 023664 94 GVPTIITWNY----GGNEVAVEG---SWDNWTSRR-ILHR---S-GKDHSILLVLPSG-VYHYKFIV 147 (279)
Q Consensus 94 ~vpv~f~W~~----gg~~V~V~G---SFnnW~~~i-~L~k---s-~~~f~~~l~LppG-~y~YKFiV 147 (279)
-|+|+|+-.. .|++|+|+| ++.+|+... +|.. . ...|++.+.||.| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~ 68 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIK 68 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 4788888742 589999999 567998642 2322 1 3579999999998 59999999
No 15
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=97.00 E-value=0.0084 Score=47.98 Aligned_cols=54 Identities=26% Similarity=0.474 Sum_probs=42.8
Q ss_pred ceeEEEEeeC-----CCceEEEEecCC---CCccce-----eeeecC-CcEEEEEECCCc-eEEEEEEE
Q 023664 94 GVPTIITWNY-----GGNEVAVEGSWD---NWTSRR-----ILHRSG-KDHSILLVLPSG-VYHYKFIV 147 (279)
Q Consensus 94 ~vpv~f~W~~-----gg~~V~V~GSFn---nW~~~i-----~L~ks~-~~f~~~l~LppG-~y~YKFiV 147 (279)
-+||+|+-+. -|++|+|+|+-. +|+... +|.... ..|++.+.||.| ..+|||++
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp~~~~veyK~v~ 70 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVPAGTYIEFKFLK 70 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcCCCCcEEEEEEE
Confidence 3789999863 488999999874 899732 565433 579999999998 59999999
No 16
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=96.87 E-value=0.0087 Score=46.71 Aligned_cols=50 Identities=22% Similarity=0.524 Sum_probs=36.0
Q ss_pred EEEeeCCCceEEEEecCCCCcc-ceeeeec--CCcEEEEEE-CCCceEEEEEEEc
Q 023664 98 IITWNYGGNEVAVEGSWDNWTS-RRILHRS--GKDHSILLV-LPSGVYHYKFIVD 148 (279)
Q Consensus 98 ~f~W~~gg~~V~V~GSFnnW~~-~i~L~ks--~~~f~~~l~-LppG~y~YKFiVD 148 (279)
.=.|..++++|.|.++|++|.. ..+|.+. .+.|.+.+. +.+|.+ |+|.|+
T Consensus 25 frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~~~G~w~~~v~~~~~~~~-Y~~~v~ 78 (106)
T cd02855 25 FAVWAPNARRVSVVGDFNGWDGRRHPMRRRGDSGVWELFIPGLGEGEL-YKYEIL 78 (106)
T ss_pred EEEECCCCCEEEEEEECCCCCCcceecEECCCCCEEEEEECCCCCCCE-EEEEEE
Confidence 3457889999999999999964 3588873 467988775 555643 555553
No 17
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.71 E-value=0.0053 Score=48.04 Aligned_cols=52 Identities=25% Similarity=0.348 Sum_probs=40.0
Q ss_pred eEEEEeeC----CCceEEEEecC---CCCccceeeeecC-CcEEEEEECCCce-EEEEEEE
Q 023664 96 PTIITWNY----GGNEVAVEGSW---DNWTSRRILHRSG-KDHSILLVLPSGV-YHYKFIV 147 (279)
Q Consensus 96 pv~f~W~~----gg~~V~V~GSF---nnW~~~i~L~ks~-~~f~~~l~LppG~-y~YKFiV 147 (279)
+++|+-.. +++.|+|+|+- -+|+...+|.... ..|++.+.||.+. .+|||++
T Consensus 2 ~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~~~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 2 NVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYVKDGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred eEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 45555432 56889999976 4899878887644 5799999999885 9999998
No 18
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=96.71 E-value=0.0024 Score=66.25 Aligned_cols=58 Identities=17% Similarity=0.401 Sum_probs=44.9
Q ss_pred EEEeeCCCceEEEEecCCCCccc-eeeee--cCCcEEEEEE-CCCceEEEEEEEcCee-----ecCCC
Q 023664 98 IITWNYGGNEVAVEGSWDNWTSR-RILHR--SGKDHSILLV-LPSGVYHYKFIVDGDW-----RYIPD 156 (279)
Q Consensus 98 ~f~W~~gg~~V~V~GSFnnW~~~-i~L~k--s~~~f~~~l~-LppG~y~YKFiVDG~W-----~~dp~ 156 (279)
--.|...++.|.|.|+||+|... .+|.. ..+.|++.+. +++| ++|||.|++.. +.||-
T Consensus 40 F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~~DP~ 106 (628)
T COG0296 40 FRVWAPNARRVSLVGDFNDWDGRRMPMRDRKESGIWELFVPGAPPG-TRYKYELIDPSGQLRLKADPY 106 (628)
T ss_pred EEEECCCCCeEEEEeecCCccceecccccCCCCceEEEeccCCCCC-CeEEEEEeCCCCceeeccCch
Confidence 34688899999999999999984 23332 2368999999 9999 89999997543 55553
No 19
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=96.67 E-value=0.0032 Score=66.61 Aligned_cols=59 Identities=25% Similarity=0.515 Sum_probs=42.9
Q ss_pred EEEEeeCCCceEEEEecCCCCccc-eeeeecC-CcEEEEEEC-------CCceEEEEEEEc---Cee--ecCCC
Q 023664 97 TIITWNYGGNEVAVEGSWDNWTSR-RILHRSG-KDHSILLVL-------PSGVYHYKFIVD---GDW--RYIPD 156 (279)
Q Consensus 97 v~f~W~~gg~~V~V~GSFnnW~~~-i~L~ks~-~~f~~~l~L-------ppG~y~YKFiVD---G~W--~~dp~ 156 (279)
+-=.|...+++|+|+|+||+|+.. .+|.|.+ +.|++.|.- +.|. .|||.|. |.| +.||-
T Consensus 117 ~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~~~GvWe~~ip~~~g~~~~~~G~-~Yky~i~~~~g~~~~r~dpy 189 (758)
T PLN02447 117 TYREWAPGAKAAALIGDFNNWNPNAHWMTKNEFGVWEIFLPDADGSPAIPHGS-RVKIRMETPDGRWVDRIPAW 189 (758)
T ss_pred EEEEECCCCCEEEEEEecCCCCCCccCceeCCCCEEEEEECCccccccCCCCC-EEEEEEEeCCCcEEeecCch
Confidence 345688899999999999999874 5898854 689988763 3443 6777774 543 45553
No 20
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.56 E-value=0.0077 Score=47.80 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=39.5
Q ss_pred EEE-EeeCCCceEEEEecCCCCc--cceeeeec-CCcEEEEEE-CCCceEEEEEEEcCe
Q 023664 97 TII-TWNYGGNEVAVEGSWDNWT--SRRILHRS-GKDHSILLV-LPSGVYHYKFIVDGD 150 (279)
Q Consensus 97 v~f-~W~~gg~~V~V~GSFnnW~--~~i~L~ks-~~~f~~~l~-LppG~y~YKFiVDG~ 150 (279)
+.| .|...+++|.|.. |++|. ..++|.+. ++.|.+.+. +.+|. .|+|.|||.
T Consensus 11 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~GvW~~~v~~~~~g~-~Y~y~i~g~ 67 (103)
T cd02856 11 CNFAVHSENATRIELCL-FDEDGSETRLPLTEEYGGVWHGFLPGIKAGQ-RYGFRVHGP 67 (103)
T ss_pred eEEEEECCCCCEEEEEE-EeCCCCEEEEEcccccCCEEEEEECCCCCCC-EEEEEECCc
Confidence 345 6888899999998 66664 34688875 478998874 56666 799999994
No 21
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=96.55 E-value=0.0094 Score=47.38 Aligned_cols=55 Identities=29% Similarity=0.485 Sum_probs=42.4
Q ss_pred CceeEEEEeeC---CCceEEEEecCC---CCccc--eeeeec-----CCcEEEEEECCCce-EEEEEEE
Q 023664 93 KGVPTIITWNY---GGNEVAVEGSWD---NWTSR--RILHRS-----GKDHSILLVLPSGV-YHYKFIV 147 (279)
Q Consensus 93 ~~vpv~f~W~~---gg~~V~V~GSFn---nW~~~--i~L~ks-----~~~f~~~l~LppG~-y~YKFiV 147 (279)
+.+.+.|+-.. -|+.|+|+|+-. +|+.. ++|... +..|++.+.||.+. ++|||+|
T Consensus 5 ~~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~ 73 (106)
T cd05811 5 TTVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIR 73 (106)
T ss_pred CEEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEE
Confidence 45777776643 589999999864 89964 577642 35799999999875 9999996
No 22
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=96.45 E-value=0.024 Score=44.80 Aligned_cols=44 Identities=27% Similarity=0.468 Sum_probs=36.1
Q ss_pred CCceEEEEecC---CCCccc--eeeeecC-CcEEEEEECCCc--eEEEEEEE
Q 023664 104 GGNEVAVEGSW---DNWTSR--RILHRSG-KDHSILLVLPSG--VYHYKFIV 147 (279)
Q Consensus 104 gg~~V~V~GSF---nnW~~~--i~L~ks~-~~f~~~l~LppG--~y~YKFiV 147 (279)
.|+.|+|+|+- .+|+.. ++|.... ..|++.+.||++ .++|||++
T Consensus 13 ~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~~~ieYKyvi 64 (99)
T cd05816 13 KGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDSFPFEYKYII 64 (99)
T ss_pred CCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCCccEEEEEEE
Confidence 58999999986 589964 5787654 479999999876 58999998
No 23
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=96.36 E-value=0.022 Score=45.10 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=40.4
Q ss_pred ceeEEEEeeC----CCceEEEEecCC---CCccce--eee-e----cCCcEEEEEECCCc-eEEEEEEE
Q 023664 94 GVPTIITWNY----GGNEVAVEGSWD---NWTSRR--ILH-R----SGKDHSILLVLPSG-VYHYKFIV 147 (279)
Q Consensus 94 ~vpv~f~W~~----gg~~V~V~GSFn---nW~~~i--~L~-k----s~~~f~~~l~LppG-~y~YKFiV 147 (279)
-++++|+-.. -|+.|+|+|+-. +|+... .|. . ....|++.+.||.| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~ 70 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIK 70 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEE
Confidence 4677787642 489999999874 899753 222 2 22479999999998 59999998
No 24
>PRK12568 glycogen branching enzyme; Provisional
Probab=96.33 E-value=0.0078 Score=63.51 Aligned_cols=61 Identities=25% Similarity=0.479 Sum_probs=45.2
Q ss_pred EEE-EeeCCCceEEEEecCCCCccc-eeeee-cCCcEEEEEE-CCCceEEEEEEE---cCeee--cCCCCC
Q 023664 97 TII-TWNYGGNEVAVEGSWDNWTSR-RILHR-SGKDHSILLV-LPSGVYHYKFIV---DGDWR--YIPDLP 158 (279)
Q Consensus 97 v~f-~W~~gg~~V~V~GSFnnW~~~-i~L~k-s~~~f~~~l~-LppG~y~YKFiV---DG~W~--~dp~~P 158 (279)
|.| .|...+++|+|+|+||+|..+ .+|.+ .++.|++.+. +.+|. .|||.| ||++. .||-.-
T Consensus 140 v~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~~~GVWelfipg~~~G~-~YKYeI~~~~G~~~~k~DPYA~ 209 (730)
T PRK12568 140 VRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQRIGGFWELFLPRVEAGA-RYKYAITAADGRVLLKADPVAR 209 (730)
T ss_pred EEEEEECCCCCEEEEEEecCCCCccceecccCCCCEEEEEECCCCCCC-EEEEEEEcCCCeEeecCCCcce
Confidence 455 677889999999999999864 57876 4578998875 66774 577777 78664 465443
No 25
>PRK14705 glycogen branching enzyme; Provisional
Probab=96.29 E-value=0.0072 Score=66.93 Aligned_cols=49 Identities=22% Similarity=0.533 Sum_probs=39.6
Q ss_pred EEeeCCCceEEEEecCCCCccc-eeeee--cCCcEEEEEE-CCCceEEEEEEEc
Q 023664 99 ITWNYGGNEVAVEGSWDNWTSR-RILHR--SGKDHSILLV-LPSGVYHYKFIVD 148 (279)
Q Consensus 99 f~W~~gg~~V~V~GSFnnW~~~-i~L~k--s~~~f~~~l~-LppG~y~YKFiVD 148 (279)
=.|...++.|+|+|+||+|..+ .+|.+ ..+.|++.+. +.+|. .|||.|+
T Consensus 643 ~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~~~GvW~~fipg~~~G~-~Yky~i~ 695 (1224)
T PRK14705 643 AVWAPNAQAVRVKGDFNGWDGREHSMRSLGSSGVWELFIPGVVAGA-CYKFEIL 695 (1224)
T ss_pred EEECCCCCEEEEEEEecCCCCCcccceECCCCCEEEEEECCCCCCC-EEEEEEE
Confidence 4688889999999999999875 57887 3478998875 77886 6888885
No 26
>PRK12313 glycogen branching enzyme; Provisional
Probab=96.18 E-value=0.012 Score=60.78 Aligned_cols=56 Identities=23% Similarity=0.444 Sum_probs=41.3
Q ss_pred EEE-EeeCCCceEEEEecCCCCccc-eeeeec-CCcEEEEEE-CCCc-eEEEEEEE-cCeee
Q 023664 97 TII-TWNYGGNEVAVEGSWDNWTSR-RILHRS-GKDHSILLV-LPSG-VYHYKFIV-DGDWR 152 (279)
Q Consensus 97 v~f-~W~~gg~~V~V~GSFnnW~~~-i~L~ks-~~~f~~~l~-LppG-~y~YKFiV-DG~W~ 152 (279)
|+| .|...+++|+|+|+|++|... .+|.+. ++.|++.+. +.+| .|+|++.+ ||.|.
T Consensus 40 v~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~ 101 (633)
T PRK12313 40 TYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRESGVWEGFIPGAKEGQLYKYHISRQDGYQV 101 (633)
T ss_pred EEEEEECCCCCEEEEEEecCCCCcccccccccCCCEEEEEeCCCCCCCEEEEEEECCCCeEE
Confidence 445 567789999999999999864 588874 578999887 4445 56666654 47653
No 27
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.09 E-value=0.023 Score=43.80 Aligned_cols=45 Identities=33% Similarity=0.489 Sum_probs=37.1
Q ss_pred CCCceEEEEecCC---CCccc--eeeeecC--CcEEEEEECCC--c-eEEEEEEE
Q 023664 103 YGGNEVAVEGSWD---NWTSR--RILHRSG--KDHSILLVLPS--G-VYHYKFIV 147 (279)
Q Consensus 103 ~gg~~V~V~GSFn---nW~~~--i~L~ks~--~~f~~~l~Lpp--G-~y~YKFiV 147 (279)
..|+.|+|+|+.. +|+.. ++|...+ +.|++.+.|+. | .++|||++
T Consensus 11 ~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 11 QFGQSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred CCCCEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEecCCCCCeEEEEEEE
Confidence 4689999999885 89854 5787654 68999999998 6 69999998
No 28
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.02 E-value=0.018 Score=46.68 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=41.6
Q ss_pred EEE-EeeCCCceEEEEecCCCCc---c--ceeeeec----CCcEEEEEE-CCCceEEEEEEEcCeeecC
Q 023664 97 TII-TWNYGGNEVAVEGSWDNWT---S--RRILHRS----GKDHSILLV-LPSGVYHYKFIVDGDWRYI 154 (279)
Q Consensus 97 v~f-~W~~gg~~V~V~GSFnnW~---~--~i~L~ks----~~~f~~~l~-LppG~y~YKFiVDG~W~~d 154 (279)
+.| .|...+++|.|.. |++|. . +++|.+. ++.|++.+. +.+|. .|+|.|||.|.-+
T Consensus 9 ~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~p~ 75 (119)
T cd02852 9 VNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ-LYGYRVDGPFEPE 75 (119)
T ss_pred EEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC-EEEEEECCCCCCC
Confidence 344 6888899999999 88886 2 3567553 478998775 56786 7999999985433
No 29
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=95.96 E-value=0.032 Score=44.23 Aligned_cols=45 Identities=20% Similarity=0.431 Sum_probs=36.7
Q ss_pred CCCceEEEEecC---CCCccc--eeeeecC-CcEEEEEECCCc-eEEEEEEE
Q 023664 103 YGGNEVAVEGSW---DNWTSR--RILHRSG-KDHSILLVLPSG-VYHYKFIV 147 (279)
Q Consensus 103 ~gg~~V~V~GSF---nnW~~~--i~L~ks~-~~f~~~l~LppG-~y~YKFiV 147 (279)
.-|+.|+|+|+- .+|+.. ++|...+ ..|++.+.||.+ .++|||+|
T Consensus 11 ~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 11 QFGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred CCCCEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEECCCCcEEEEEEE
Confidence 358999999984 589964 5787644 579999999987 59999998
No 30
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=95.88 E-value=0.03 Score=44.41 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=35.7
Q ss_pred CCceEEEEecCC---CCccc--eeeeecC-CcEEEEEECCCc-eEEEEEEE
Q 023664 104 GGNEVAVEGSWD---NWTSR--RILHRSG-KDHSILLVLPSG-VYHYKFIV 147 (279)
Q Consensus 104 gg~~V~V~GSFn---nW~~~--i~L~ks~-~~f~~~l~LppG-~y~YKFiV 147 (279)
-|+.|+|+|+-. +|+.. ++|.... ..|++.+.||.| ..+|||++
T Consensus 14 ~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~~veyKyv~ 64 (97)
T cd05810 14 LGQSVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPASTNVEWKCLK 64 (97)
T ss_pred CCCeEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCCeEEEEEEE
Confidence 588999999875 89964 4675543 469999999988 59999988
No 31
>PRK14706 glycogen branching enzyme; Provisional
Probab=95.85 E-value=0.016 Score=60.42 Aligned_cols=52 Identities=25% Similarity=0.459 Sum_probs=40.2
Q ss_pred EEE-EeeCCCceEEEEecCCCCccc-eeeeec-CCcEEEEEEC-CCceEEEEEEEcC
Q 023664 97 TII-TWNYGGNEVAVEGSWDNWTSR-RILHRS-GKDHSILLVL-PSGVYHYKFIVDG 149 (279)
Q Consensus 97 v~f-~W~~gg~~V~V~GSFnnW~~~-i~L~ks-~~~f~~~l~L-ppG~y~YKFiVDG 149 (279)
|.| .|...+++|+|+|+||+|... .+|.+. .+.|++.+.. ..| ..|||.|++
T Consensus 40 v~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~~GvW~~~vpg~~~g-~~Yky~I~~ 95 (639)
T PRK14706 40 VRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLDFGFWGAFVPGARPG-QRYKFRVTG 95 (639)
T ss_pred EEEEEECCCCCEEEEEEecCCcccccccccccCCCEEEEEECCCCCC-CEEEEEEEC
Confidence 444 677889999999999999874 588875 4689988763 455 468888865
No 32
>PRK05402 glycogen branching enzyme; Provisional
Probab=95.52 E-value=0.033 Score=58.61 Aligned_cols=55 Identities=18% Similarity=0.534 Sum_probs=40.3
Q ss_pred EEE-EeeCCCceEEEEecCCCCccc-eeeeec--CCcEEEEEE-CCCc-eEEEEEEEc-Cee
Q 023664 97 TII-TWNYGGNEVAVEGSWDNWTSR-RILHRS--GKDHSILLV-LPSG-VYHYKFIVD-GDW 151 (279)
Q Consensus 97 v~f-~W~~gg~~V~V~GSFnnW~~~-i~L~ks--~~~f~~~l~-LppG-~y~YKFiVD-G~W 151 (279)
|+| .|...+++|+|+|+||+|... .+|.+. ++.|++.+. +++| .|+|++..+ |.|
T Consensus 133 v~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~ 194 (726)
T PRK05402 133 VRFAVWAPNARRVSVVGDFNGWDGRRHPMRLRGESGVWELFIPGLGEGELYKFEILTADGEL 194 (726)
T ss_pred EEEEEECCCCCEEEEEEEcCCCCCccccceEcCCCCEEEEEeCCCCCCCEEEEEEeCCCCcE
Confidence 444 466789999999999999864 588875 468998775 5666 566666654 455
No 33
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=95.07 E-value=0.23 Score=39.10 Aligned_cols=50 Identities=24% Similarity=0.413 Sum_probs=36.9
Q ss_pred EEEeeC-CCceEEEEecC---CCCccc--eeeeec--C--CcEEEEEECCCc-eEEEEEEE
Q 023664 98 IITWNY-GGNEVAVEGSW---DNWTSR--RILHRS--G--KDHSILLVLPSG-VYHYKFIV 147 (279)
Q Consensus 98 ~f~W~~-gg~~V~V~GSF---nnW~~~--i~L~ks--~--~~f~~~l~LppG-~y~YKFiV 147 (279)
.+.+.. -|+.|+|+|+- .+|+.. ++|... + ..|++.+.++.+ .++|||+|
T Consensus 5 ~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v 65 (101)
T cd05815 5 KLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYV 65 (101)
T ss_pred EEEEEccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence 344443 58999999977 489764 577532 2 269999999887 59999999
No 34
>PRK05402 glycogen branching enzyme; Provisional
Probab=95.06 E-value=0.037 Score=58.24 Aligned_cols=53 Identities=19% Similarity=0.029 Sum_probs=40.1
Q ss_pred EEEEeeCCCceEEEEecCCCCccceeeeec--CCcEEEEEECCCceEEEEEEE--cCee
Q 023664 97 TIITWNYGGNEVAVEGSWDNWTSRRILHRS--GKDHSILLVLPSGVYHYKFIV--DGDW 151 (279)
Q Consensus 97 v~f~W~~gg~~V~V~GSFnnW~~~i~L~ks--~~~f~~~l~LppG~y~YKFiV--DG~W 151 (279)
+.-+|...+++|+|+|+||+ ....+|++. .+.|++.+.+..|.. |||.| ||++
T Consensus 31 ~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~~~~G~w~~~ip~~~g~~-YKy~i~~~g~~ 87 (726)
T PRK05402 31 VVRALLPGAEEVWVILPGGG-RKLAELERLHPRGLFAGVLPRKGPFD-YRLRVTWGGGE 87 (726)
T ss_pred EEEEECCCCeEEEEEeecCC-CccccceEcCCCceEEEEecCCCCCC-eEEEEEeCCce
Confidence 55679999999999999997 344689873 478999888777732 55555 7864
No 35
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=95.02 E-value=0.13 Score=40.18 Aligned_cols=54 Identities=20% Similarity=0.410 Sum_probs=35.9
Q ss_pred eEEEEeeC------CCceEEEEecCCCCccc--eeeeecC-----CcEEEEEECCCceEEEEEEE-cC
Q 023664 96 PTIITWNY------GGNEVAVEGSWDNWTSR--RILHRSG-----KDHSILLVLPSGVYHYKFIV-DG 149 (279)
Q Consensus 96 pv~f~W~~------gg~~V~V~GSFnnW~~~--i~L~ks~-----~~f~~~l~LppG~y~YKFiV-DG 149 (279)
+|+|.|+. ++.+|++.+.|++|+.. +.|.+.. +-|+++|.+|..-|+..|+. ||
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF~dg 70 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVFNDG 70 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEEE-S
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEEcCC
Confidence 56677743 47899999999999975 5677653 67999999999989999988 65
No 36
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=94.80 E-value=0.12 Score=52.85 Aligned_cols=58 Identities=16% Similarity=0.147 Sum_probs=45.3
Q ss_pred EE-EeeCCCceEEEEecCCCCccceeeeecC-CcEEEEEE-CCCceEEEEEEEcC-eeecCCCCCee
Q 023664 98 II-TWNYGGNEVAVEGSWDNWTSRRILHRSG-KDHSILLV-LPSGVYHYKFIVDG-DWRYIPDLPFV 160 (279)
Q Consensus 98 ~f-~W~~gg~~V~V~GSFnnW~~~i~L~ks~-~~f~~~l~-LppG~y~YKFiVDG-~W~~dp~~P~~ 160 (279)
+| .|...+++|.|.+. ++ .++|.|.+ +.|++.+. +.+| +.|+|.||| ..+.||.....
T Consensus 2 ~FrlwAP~A~~V~L~l~---~~-~~~m~k~~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~ 63 (542)
T TIGR02402 2 RFRLWAPTAASVKLRLN---GA-LHAMQRLGDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQ 63 (542)
T ss_pred EEEEECCCCCEEEEEeC---CC-EEeCeECCCCEEEEEECCCCCC-CEEEEEEeeeEEecCcccccc
Confidence 45 47888999999973 33 47898865 58999887 6778 789999999 67888877654
No 37
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=94.14 E-value=0.11 Score=53.76 Aligned_cols=61 Identities=21% Similarity=0.448 Sum_probs=44.1
Q ss_pred EEEEeeCCCceEEEEecCCCCccc-eeeeec--CCcEEEEEE-CCCceEEEEEEEc---Ce--eecCCCCC
Q 023664 97 TIITWNYGGNEVAVEGSWDNWTSR-RILHRS--GKDHSILLV-LPSGVYHYKFIVD---GD--WRYIPDLP 158 (279)
Q Consensus 97 v~f~W~~gg~~V~V~GSFnnW~~~-i~L~ks--~~~f~~~l~-LppG~y~YKFiVD---G~--W~~dp~~P 158 (279)
+.=.|...+++|+|+|+||+|... .+|.+. ++.|++.+. +.+|. .|||.|+ |. ++.||-.-
T Consensus 31 ~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPYA~ 100 (613)
T TIGR01515 31 RFCVWAPNAREVRVAGDFNYWDGREHPMRRRNDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPYAF 100 (613)
T ss_pred EEEEECCCCCEEEEEEecCCCCCceecceEecCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCCEe
Confidence 344678889999999999999864 478775 468998776 35565 5888884 54 35666443
No 38
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=93.90 E-value=0.53 Score=38.81 Aligned_cols=50 Identities=20% Similarity=0.322 Sum_probs=38.4
Q ss_pred EEEeeCCCceEEEEecC---CCCccc--eeeeec-------C-CcEEEEEECCCc----eEEEEEEE
Q 023664 98 IITWNYGGNEVAVEGSW---DNWTSR--RILHRS-------G-KDHSILLVLPSG----VYHYKFIV 147 (279)
Q Consensus 98 ~f~W~~gg~~V~V~GSF---nnW~~~--i~L~ks-------~-~~f~~~l~LppG----~y~YKFiV 147 (279)
+.+....|++|+|+|+- -+|+.. ++|... . ..|++.+.|+.+ ..+|||+.
T Consensus 8 ~~~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 8 VLTFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred EEeecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 33566789999999976 489965 456543 2 359999999986 69999998
No 39
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=92.59 E-value=0.32 Score=37.13 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=41.2
Q ss_pred EEEeeCCCceEEEEecCCCCccceeeeec-CCcEEEEEECCCceEEEEEEEc-CeeecCCCCCe
Q 023664 98 IITWNYGGNEVAVEGSWDNWTSRRILHRS-GKDHSILLVLPSGVYHYKFIVD-GDWRYIPDLPF 159 (279)
Q Consensus 98 ~f~W~~gg~~V~V~GSFnnW~~~i~L~ks-~~~f~~~l~LppG~y~YKFiVD-G~W~~dp~~P~ 159 (279)
.-.|...+++|.|.... |. .++|.+. ++.|++.+..-+|. .|+|.|+ +..+.||-...
T Consensus 12 F~vwAP~A~~V~l~l~~--~~-~~~m~~~~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~ 71 (85)
T cd02853 12 FRLWAPDAKRVTLRLDD--GE-EIPMQRDGDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRF 71 (85)
T ss_pred EEEeCCCCCEEEEEecC--CC-cccCccCCCcEEEEEeCCCCCC-eEEEEECCCcCCCCCcccc
Confidence 33488889999999643 54 4788875 46899887643665 5778877 56777776654
No 40
>PLN02950 4-alpha-glucanotransferase
Probab=91.27 E-value=1.2 Score=48.39 Aligned_cols=72 Identities=18% Similarity=0.265 Sum_probs=51.2
Q ss_pred CCCCceeEEEEeeC----CCceEEEEecCC---CCccc--eeeeec-CCcEEEEEECCCc--eEEEEEEE---cC--eee
Q 023664 90 PLEKGVPTIITWNY----GGNEVAVEGSWD---NWTSR--RILHRS-GKDHSILLVLPSG--VYHYKFIV---DG--DWR 152 (279)
Q Consensus 90 ~~~~~vpv~f~W~~----gg~~V~V~GSFn---nW~~~--i~L~ks-~~~f~~~l~LppG--~y~YKFiV---DG--~W~ 152 (279)
+....+.++|+-.. .|+.|+|+|+-. +|+.. ..|... ...|++.+.|+.+ ..+|||++ +| .|-
T Consensus 148 ~~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~WE 227 (909)
T PLN02950 148 PAPDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTGDSIWEADCLVPKSDFPIKYKYALQTAEGLVSLE 227 (909)
T ss_pred CCCCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCCCCcEEEEEEecCCCceEEEEEEEEcCCCceEEe
Confidence 34556778888643 489999999774 89965 456643 3589999999988 49999998 34 376
Q ss_pred cCCCCCeee
Q 023664 153 YIPDLPFVA 161 (279)
Q Consensus 153 ~dp~~P~~~ 161 (279)
..++.-...
T Consensus 228 ~g~NR~~~~ 236 (909)
T PLN02950 228 LGVNRELSL 236 (909)
T ss_pred eCCCceeec
Confidence 555544333
No 41
>PLN02316 synthase/transferase
Probab=91.21 E-value=1.3 Score=49.00 Aligned_cols=82 Identities=21% Similarity=0.284 Sum_probs=55.2
Q ss_pred CCCCCceeEEEEeeC------CCceEEEEecCCCCccce----eeeec----CCcEEEEEECCCceEEEEEEE-cCeeec
Q 023664 89 NPLEKGVPTIITWNY------GGNEVAVEGSWDNWTSRR----ILHRS----GKDHSILLVLPSGVYHYKFIV-DGDWRY 153 (279)
Q Consensus 89 ~~~~~~vpv~f~W~~------gg~~V~V~GSFnnW~~~i----~L~ks----~~~f~~~l~LppG~y~YKFiV-DG~W~~ 153 (279)
.....+-++++-|+. +..+|+|.|.||+|+... .|.++ ++-|.+++.+|..-|-.-|+. ||.
T Consensus 323 ~~~~aG~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg~--- 399 (1036)
T PLN02316 323 SEFKAGDTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLVKSEEKDGDWWYAEVVVPERALVLDWVFADGP--- 399 (1036)
T ss_pred CCcCCCCEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceeecccCCCCCEEEEEEecCCCceEEEEEEecCC---
Confidence 344567788899984 468999999999999642 34442 335788999999999999987 664
Q ss_pred CCCCCeeeCCCCCeEeEEEec
Q 023664 154 IPDLPFVADELGGVCNLLDVH 174 (279)
Q Consensus 154 dp~~P~~~D~~Gn~nNvl~V~ 174 (279)
+......|.+++..=-+-|.
T Consensus 400 -~~~~~~yDNn~~~Dyh~~v~ 419 (1036)
T PLN02316 400 -PGNARNYDNNGRQDFHAIVP 419 (1036)
T ss_pred -cccccccccCCCcceeeecC
Confidence 22333444444444444444
No 42
>PLN02950 4-alpha-glucanotransferase
Probab=90.84 E-value=1.6 Score=47.57 Aligned_cols=56 Identities=23% Similarity=0.322 Sum_probs=41.2
Q ss_pred CCceeEEEEeeC---CCceEEEEecCC---CCccc--eeeeec----CCcEEEEEECCCc-eEEEEEEE
Q 023664 92 EKGVPTIITWNY---GGNEVAVEGSWD---NWTSR--RILHRS----GKDHSILLVLPSG-VYHYKFIV 147 (279)
Q Consensus 92 ~~~vpv~f~W~~---gg~~V~V~GSFn---nW~~~--i~L~ks----~~~f~~~l~LppG-~y~YKFiV 147 (279)
...+.+.|.-.. -|++|+|+|+-. +|+.. ++|... +..|++.+.|+.| ..+|||++
T Consensus 6 ~~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~ 74 (909)
T PLN02950 6 LKSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYV 74 (909)
T ss_pred CCcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEE
Confidence 345666666543 489999999884 79865 577533 2369999999987 59999995
No 43
>PLN02960 alpha-amylase
Probab=90.58 E-value=0.22 Score=53.78 Aligned_cols=52 Identities=21% Similarity=0.500 Sum_probs=39.0
Q ss_pred EEEEeeCCCceEEEEecCCCCccce-eee-----ecC-CcEEEEEE--CCCce-------EEEEEEEc
Q 023664 97 TIITWNYGGNEVAVEGSWDNWTSRR-ILH-----RSG-KDHSILLV--LPSGV-------YHYKFIVD 148 (279)
Q Consensus 97 v~f~W~~gg~~V~V~GSFnnW~~~i-~L~-----ks~-~~f~~~l~--LppG~-------y~YKFiVD 148 (279)
.-..|..|+..++|+|+||||+.+. .|. |++ +.|.|+|+ |..|. -+|.|.+|
T Consensus 131 ~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 131 DFMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred EEEEEcCCceeEEEeecccCCCcccchhhcccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 4578999999999999999999874 444 333 57888876 66662 35777775
No 44
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=90.27 E-value=2.5 Score=35.06 Aligned_cols=81 Identities=21% Similarity=0.227 Sum_probs=53.4
Q ss_pred eEEEEee----CCCceEEEEecCCCCccc-----eeeeecC--CcEEEEEECCCc-eEEEEEEEcCe-------------
Q 023664 96 PTIITWN----YGGNEVAVEGSWDNWTSR-----RILHRSG--KDHSILLVLPSG-VYHYKFIVDGD------------- 150 (279)
Q Consensus 96 pv~f~W~----~gg~~V~V~GSFnnW~~~-----i~L~ks~--~~f~~~l~LppG-~y~YKFiVDG~------------- 150 (279)
-|+|.|. +....|.|-|+.|+...+ ..|+|-. +.|..++.||.+ .=.|+|+.+-.
T Consensus 3 ~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~gTDVW~~t~~lp~d~rgSY~~~p~~~~~~~~~r~~~r~~ 82 (122)
T PF11806_consen 3 LVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLPGTDVWYWTYRLPADWRGSYSFIPDVPDARGAQREWWRAI 82 (122)
T ss_dssp EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE-TTSSEEEEEEEEETT-EEEEEEEEES-T-HHHHHHHHHHH
T ss_pred EEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeCCCCceEEEEEEECcccEEEEEEEecCcccchhHHHHHHHH
Confidence 4899999 456779999999999653 3688854 479999999987 67899997533
Q ss_pred ---eecCCCCCee-eCC---CCCeEeEEEeccC
Q 023664 151 ---WRYIPDLPFV-ADE---LGGVCNLLDVHSC 176 (279)
Q Consensus 151 ---W~~dp~~P~~-~D~---~Gn~nNvl~V~~~ 176 (279)
-+.||-+|.. ... .|+..+++++.+.
T Consensus 83 l~~~~~DPlNp~~~~~~~~~~g~~~S~l~Lp~A 115 (122)
T PF11806_consen 83 LAQAQADPLNPRPWPNGAQDRGNAASVLELPDA 115 (122)
T ss_dssp GGG-B--TTSSSEEE-TT---SSEEEEEE-TTS
T ss_pred HhccCCCCCCCCCCCCCccccccccCceeCCCC
Confidence 3568888864 333 4788999988654
No 45
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=89.92 E-value=1.1 Score=34.58 Aligned_cols=62 Identities=23% Similarity=0.247 Sum_probs=42.8
Q ss_pred CCCceeEEEEeeCCC---ceEEEEecC-CCCccceeeeec-CCcEEEEEECCCceEEEEEEE-c-CeeecCC
Q 023664 91 LEKGVPTIITWNYGG---NEVAVEGSW-DNWTSRRILHRS-GKDHSILLVLPSGVYHYKFIV-D-GDWRYIP 155 (279)
Q Consensus 91 ~~~~vpv~f~W~~gg---~~V~V~GSF-nnW~~~i~L~ks-~~~f~~~l~LppG~y~YKFiV-D-G~W~~dp 155 (279)
.+.-.-+.|.+.+|. ..|.|.++= .+|. +|.|+ +..|.+.-.++.|-+.+|+.. | |+++...
T Consensus 10 ~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~---~m~r~wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~~ 78 (82)
T PF01357_consen 10 NPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWI---PMKRSWGAVWQIDSNPPGGPLSFRVTSGDSGQTVVAD 78 (82)
T ss_dssp BTTEEEEEEEECCTTS-EEEEEEEETTSSS-E---E-EEECTTEEEEE-SS--SSEEEEEEETTTSEEEEEE
T ss_pred CCcEEEEEEEEcCCCccEEEEEEEeCCCCCce---EeecCcCceEEECCCCcCCCEEEEEEEcCCCeEEEEe
Confidence 356677888888764 478998544 4576 48887 568998778888999999998 7 8887653
No 46
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=89.23 E-value=0.95 Score=46.74 Aligned_cols=61 Identities=20% Similarity=0.210 Sum_probs=42.0
Q ss_pred EEE-EeeCCCceEEEEecCCCCcc-----ceeeeec-CCcEEEEEE-CCCceEEEEEEE--cCe--eecCCCCCe
Q 023664 97 TII-TWNYGGNEVAVEGSWDNWTS-----RRILHRS-GKDHSILLV-LPSGVYHYKFIV--DGD--WRYIPDLPF 159 (279)
Q Consensus 97 v~f-~W~~gg~~V~V~GSFnnW~~-----~i~L~ks-~~~f~~~l~-LppG~y~YKFiV--DG~--W~~dp~~P~ 159 (279)
|.| .|...+++|+|.+ |++|.. .++|.+. ++.|++.+. +..|. .|+|.| +|. ++.||-.-.
T Consensus 21 ~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~~gvw~~~i~~~~~g~-~Y~y~v~~~~~~~~~~DPya~~ 93 (605)
T TIGR02104 21 TVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGENGVWSAVLEGDLHGY-FYTYQVCINGKWRETVDPYAKA 93 (605)
T ss_pred eEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCCCCEEEEEECCCCCCC-EEEEEEEcCCCeEEEcCCCcce
Confidence 455 5777899999998 888853 4688864 478998886 45564 355555 555 477876543
No 47
>PLN02316 synthase/transferase
Probab=88.93 E-value=1.1 Score=49.33 Aligned_cols=61 Identities=21% Similarity=0.411 Sum_probs=46.4
Q ss_pred eeEEEEeeC------CCceEEEEecCCCCccc---eeeeecC--Cc-EEEEEECCCceEEEEEEE-cCeeecCC
Q 023664 95 VPTIITWNY------GGNEVAVEGSWDNWTSR---RILHRSG--KD-HSILLVLPSGVYHYKFIV-DGDWRYIP 155 (279)
Q Consensus 95 vpv~f~W~~------gg~~V~V~GSFnnW~~~---i~L~ks~--~~-f~~~l~LppG~y~YKFiV-DG~W~~dp 155 (279)
-++.+-|+. +..+|.|.|.||+|+-. .+|.|++ ++ |++.+.+|+.-|..-|+. ||.-.+|.
T Consensus 154 ~~~~v~~n~~~~~L~~~~~v~i~~gfN~W~~~~f~~~~~k~~~~g~ww~~~v~Vp~~A~~ldfVf~~g~~~yDN 227 (1036)
T PLN02316 154 SDIEVYLNRSLSTLANEPDVLIMGAFNGWRWKSFTERLEKTELGGDWWSCKLHIPKEAYKMDFVFFNGQNVYDN 227 (1036)
T ss_pred CeeEEEEcCCCCccCCCCceEEEeccccccccccceeccccccCCCeEEEEEecCccceEEEEEEeCCcccccc
Confidence 356666664 35789999999999975 3687763 44 788999999999999998 77544443
No 48
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=87.51 E-value=4.7 Score=31.55 Aligned_cols=54 Identities=13% Similarity=0.054 Sum_probs=34.9
Q ss_pred ceeEEEEee-CCCceEEEEecCCC--Cc-cceeeeecCC-----cEEEEEECCCceEEEEEEE
Q 023664 94 GVPTIITWN-YGGNEVAVEGSWDN--WT-SRRILHRSGK-----DHSILLVLPSGVYHYKFIV 147 (279)
Q Consensus 94 ~vpv~f~W~-~gg~~V~V~GSFnn--W~-~~i~L~ks~~-----~f~~~l~LppG~y~YKFiV 147 (279)
.+.++|+=. ...+.|.|.-.-+. |. ..++|.+.+. .|++.+.++.|.+.|.|+|
T Consensus 17 ~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 17 TLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred EEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEE
Confidence 344444332 23577887654332 22 2468887542 3889999888999999999
No 49
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=85.13 E-value=3.4 Score=40.88 Aligned_cols=88 Identities=18% Similarity=0.100 Sum_probs=58.7
Q ss_pred CCCceeEEEEeeCC-Cc-------eEEEE--ecCC--CCccceeeeecC--CcEEEEEECCCc-eEEEEEEEc---C---
Q 023664 91 LEKGVPTIITWNYG-GN-------EVAVE--GSWD--NWTSRRILHRSG--KDHSILLVLPSG-VYHYKFIVD---G--- 149 (279)
Q Consensus 91 ~~~~vpv~f~W~~g-g~-------~V~V~--GSFn--nW~~~i~L~ks~--~~f~~~l~LppG-~y~YKFiVD---G--- 149 (279)
.+...-|+|-|.+. |+ .|||- |..| .+.....|+|-+ +.|+..+.||.. .-.|+|+++ .
T Consensus 35 ~~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl~~tDvW~~~~~~p~~~r~sY~~~~~~~~~~~~ 114 (411)
T PRK10439 35 DDGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRIAGTDVWQWSTELSANWRGSYCFIPTERDDIFS 114 (411)
T ss_pred CCCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhccCCCceEEEEEEECcccEEEEEEEecccccccc
Confidence 35567899999962 32 58873 2222 133334788854 469999999987 678999993 1
Q ss_pred ----------------------eeecCCCCCeee-CCCCCeEeEEEeccCch
Q 023664 150 ----------------------DWRYIPDLPFVA-DELGGVCNLLDVHSCVP 178 (279)
Q Consensus 150 ----------------------~W~~dp~~P~~~-D~~Gn~nNvl~V~~~~p 178 (279)
.-+.||.+|... +..|+-.++|++.+..+
T Consensus 115 ~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~lp~a~~ 166 (411)
T PRK10439 115 AFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEMPQAPL 166 (411)
T ss_pred ccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccCCCCCC
Confidence 113788888643 44566579999986543
No 50
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=78.75 E-value=4.2 Score=43.00 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=37.8
Q ss_pred EEE-EeeCCCceEEEEecCCCCcc----ceeeeec-CCcEEEEEE-CCCceEEEEEEEcCee
Q 023664 97 TII-TWNYGGNEVAVEGSWDNWTS----RRILHRS-GKDHSILLV-LPSGVYHYKFIVDGDW 151 (279)
Q Consensus 97 v~f-~W~~gg~~V~V~GSFnnW~~----~i~L~ks-~~~f~~~l~-LppG~y~YKFiVDG~W 151 (279)
|.| .|...++.|.|. -|++|.. .++|.+. ++.|++.+. +..|. .|+|.|+|.|
T Consensus 16 ~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~g~-~Y~yrv~g~~ 75 (688)
T TIGR02100 16 VNFALFSANAEKVELC-LFDAQGEKEEARLPLPERTDDIWHGYLPGAQPGQ-LYGYRVHGPY 75 (688)
T ss_pred EEEEEECCCCCEEEEE-EEcCCCCceeeEEecccCCCCEEEEEECCCCCCC-EEEEEEeeee
Confidence 344 577789999986 5555542 3578764 568999886 67777 4999999854
No 51
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=74.07 E-value=12 Score=41.81 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=42.4
Q ss_pred EEEeeCCCceEEEEe-cCCCCcc---ceeeeec-CCcEEEEEE-CCCc-----eEEEEEEEcC----eeecCCCCC
Q 023664 98 IITWNYGGNEVAVEG-SWDNWTS---RRILHRS-GKDHSILLV-LPSG-----VYHYKFIVDG----DWRYIPDLP 158 (279)
Q Consensus 98 ~f~W~~gg~~V~V~G-SFnnW~~---~i~L~ks-~~~f~~~l~-LppG-----~y~YKFiVDG----~W~~dp~~P 158 (279)
.=.|...+++|.|.. .+++|.. .++|.+. ++.|++.+. +.+| -+.|+|.|++ ....||-..
T Consensus 331 F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~~~~DPYA~ 406 (1111)
T TIGR02102 331 LKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGDRGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKVLALDPYAK 406 (1111)
T ss_pred EEEECCCCCEEEEEEEeCCCCCCceeeEecccCCCCEEEEEECCcccCcccCCCceEEEEEECCCceEEEeChhhe
Confidence 336888899999998 4566654 5788875 468999876 3332 3678888876 456666444
No 52
>PLN03244 alpha-amylase; Provisional
Probab=72.54 E-value=3.4 Score=44.64 Aligned_cols=45 Identities=22% Similarity=0.441 Sum_probs=34.5
Q ss_pred eeEEEEeeCCCceEEEEecCCCCccceeeee------cC-CcEEEEEE--CCCc
Q 023664 95 VPTIITWNYGGNEVAVEGSWDNWTSRRILHR------SG-KDHSILLV--LPSG 139 (279)
Q Consensus 95 vpv~f~W~~gg~~V~V~GSFnnW~~~i~L~k------s~-~~f~~~l~--LppG 139 (279)
.-+.-.|..|+.--+|+|+||||++..-..| ++ +.|.|+|+ |..|
T Consensus 132 ~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~ 185 (872)
T PLN03244 132 RVDFMDWAPGARYCAIIGDFNGWSPTENAAREGHFGHDDYGYWFIILEDKLREG 185 (872)
T ss_pred CceeEeecCCcceeeeeccccCCCccccccccccccccccceEEEEechhhhcC
Confidence 3456789999999999999999998754434 33 57888876 6666
No 53
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=72.52 E-value=20 Score=28.95 Aligned_cols=65 Identities=15% Similarity=0.120 Sum_probs=40.8
Q ss_pred CCceeEEEEee-CCCceEEEE-ecCCCC----c-cceeeeecC-----CcEEEEEECCCceEEEEEEEc--C-eeecCCC
Q 023664 92 EKGVPTIITWN-YGGNEVAVE-GSWDNW----T-SRRILHRSG-----KDHSILLVLPSGVYHYKFIVD--G-DWRYIPD 156 (279)
Q Consensus 92 ~~~vpv~f~W~-~gg~~V~V~-GSFnnW----~-~~i~L~ks~-----~~f~~~l~LppG~y~YKFiVD--G-~W~~dp~ 156 (279)
...+.++|+=. +..++|.|. |+-.+| . ...+|+|.. ..|++++.++.....|.|.|- | .+.++..
T Consensus 20 ~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l~~~~~~~~y~~~ 99 (120)
T PF02903_consen 20 GDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFELEDGGETYYYGER 99 (120)
T ss_dssp TTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEEEETTEEEEEETT
T ss_pred CCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEEEeCCEEEEEeCC
Confidence 34555555554 356888885 666666 2 225788742 258999999999888999883 3 3555543
No 54
>PRK03705 glycogen debranching enzyme; Provisional
Probab=68.59 E-value=12 Score=39.47 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=38.4
Q ss_pred EEE-EeeCCCceEEEEecCCCCc--cceeeeec-CCcEEEEEE-CCCceEEEEEEEcCee
Q 023664 97 TII-TWNYGGNEVAVEGSWDNWT--SRRILHRS-GKDHSILLV-LPSGVYHYKFIVDGDW 151 (279)
Q Consensus 97 v~f-~W~~gg~~V~V~GSFnnW~--~~i~L~ks-~~~f~~~l~-LppG~y~YKFiVDG~W 151 (279)
|.| .|...+++|.|.. |+++. ..++|.+. ++.|++.+. +.+|. .|+|.|+|.|
T Consensus 21 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~gvW~~~v~~~~~G~-~Y~yrv~g~~ 78 (658)
T PRK03705 21 VNFTLFSAHAERVELCV-FDENGQEQRYDLPARSGDIWHGYLPGARPGL-RYGYRVHGPW 78 (658)
T ss_pred EEEEEECCCCCEEEEEE-EcCCCCeeeEeeeeccCCEEEEEECCCCCCC-EEEEEEcccc
Confidence 445 5777899999997 76652 34678764 568998876 55665 5999999854
No 55
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=68.54 E-value=15 Score=31.14 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=34.9
Q ss_pred ceeEEEEeeCC-CceEEEEecCCCCccceeee-ecCCcEEEEEECCCceEEEEE
Q 023664 94 GVPTIITWNYG-GNEVAVEGSWDNWTSRRILH-RSGKDHSILLVLPSGVYHYKF 145 (279)
Q Consensus 94 ~vpv~f~W~~g-g~~V~V~GSFnnW~~~i~L~-ks~~~f~~~l~LppG~y~YKF 145 (279)
+-.|+|+|... +.+|...++.+-|... .+. +-+..|+.+++- +|.|.|+=
T Consensus 61 GDTVtw~~~d~~~Hnv~~~~~~~~~g~~-~~~~~~~~s~~~Tfe~-~G~Y~Y~C 112 (128)
T COG3794 61 GDTVTWVNTDSVGHNVTAVGGMDPEGSG-TLKAGINESFTHTFET-PGEYTYYC 112 (128)
T ss_pred CCEEEEEECCCCCceEEEeCCCCccccc-ccccCCCcceEEEecc-cceEEEEe
Confidence 44688999987 9999999988555442 222 223567776665 79999963
No 56
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=60.92 E-value=20 Score=39.39 Aligned_cols=76 Identities=14% Similarity=0.076 Sum_probs=46.4
Q ss_pred EEEEeeCCCceEEEEecCCCCc--cceeeeec--CCcEEEEEE-CCCceEEEEEEEc------Ce----eecCCCCCeee
Q 023664 97 TIITWNYGGNEVAVEGSWDNWT--SRRILHRS--GKDHSILLV-LPSGVYHYKFIVD------GD----WRYIPDLPFVA 161 (279)
Q Consensus 97 v~f~W~~gg~~V~V~GSFnnW~--~~i~L~ks--~~~f~~~l~-LppG~y~YKFiVD------G~----W~~dp~~P~~~ 161 (279)
+.=.|...+++|.|..-.++|. ..++|.+. .+.|++.+. ...|. .|+|.|+ |+ .+.||-.-...
T Consensus 138 ~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v~~~~v~DPYA~als 216 (898)
T TIGR02103 138 TFRLWAPTAQQVKLHIYSASKKVETTLPMTRDSTSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKVETYLVTDPYSVSLS 216 (898)
T ss_pred EEEEECCCCCEEEEEEEcCCCCccceEeCccCCCCCEEEEEECcCCCCC-EeEEEEEEecCCCCeECCeEEeCcCcceEc
Confidence 3346888899999997665553 23688875 578999876 34565 3777775 53 36676544332
Q ss_pred CCCCCeEeEEEec
Q 023664 162 DELGGVCNLLDVH 174 (279)
Q Consensus 162 D~~Gn~nNvl~V~ 174 (279)
..|...=+++..
T Consensus 217 -~n~~~S~VvDl~ 228 (898)
T TIGR02103 217 -ANSEYSQVVDLN 228 (898)
T ss_pred -CCCCCeEEeCCc
Confidence 233333344443
No 57
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=59.24 E-value=16 Score=41.31 Aligned_cols=53 Identities=21% Similarity=0.289 Sum_probs=39.3
Q ss_pred EEE-EeeCCCceEEEEecCCCCcc----ceeee-ecCCcEEEEEE-CCCceEEEEEEEcCee
Q 023664 97 TII-TWNYGGNEVAVEGSWDNWTS----RRILH-RSGKDHSILLV-LPSGVYHYKFIVDGDW 151 (279)
Q Consensus 97 v~f-~W~~gg~~V~V~GSFnnW~~----~i~L~-ks~~~f~~~l~-LppG~y~YKFiVDG~W 151 (279)
|.| .|...+++|.|+ -|+.|.. +++|. +.++.|++.+. +.+|. .|+|.|+|.|
T Consensus 25 v~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~~~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 25 VNLALFSGAAERVEFC-LFDLWGVREEARIKLPGRTGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred EEEEEECCCCCEEEEE-EEECCCCCeeEEEECCCCcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 455 466779999997 8888864 35664 45678887665 77887 6999999865
No 58
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=51.71 E-value=54 Score=26.45 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=37.4
Q ss_pred CceeEEEEeeCC--CceEEEEecCCCCccceeee----e-----cC----CcEEEEEECCCc--------eEEEEEEEcC
Q 023664 93 KGVPTIITWNYG--GNEVAVEGSWDNWTSRRILH----R-----SG----KDHSILLVLPSG--------VYHYKFIVDG 149 (279)
Q Consensus 93 ~~vpv~f~W~~g--g~~V~V~GSFnnW~~~i~L~----k-----s~----~~f~~~l~LppG--------~y~YKFiVDG 149 (279)
..+..++.=..- .|+|.|.=|||+|+....+. . +. ..|...+.|++. .+-.+|.|+|
T Consensus 19 ~~L~G~V~V~NlayeK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~g 98 (113)
T PF03370_consen 19 QSLSGTVRVRNLAYEKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVNG 98 (113)
T ss_dssp SEEEEEEEEE-SSSSEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEETT
T ss_pred CEEEEEEEEEcCCCCeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeCC
Confidence 344444444432 47899999999999754321 1 11 258888888754 4667888998
Q ss_pred eee
Q 023664 150 DWR 152 (279)
Q Consensus 150 ~W~ 152 (279)
+-.
T Consensus 99 ~ey 101 (113)
T PF03370_consen 99 QEY 101 (113)
T ss_dssp EEE
T ss_pred CEE
Confidence 633
No 59
>PRK10785 maltodextrin glucosidase; Provisional
Probab=48.90 E-value=91 Score=32.37 Aligned_cols=58 Identities=12% Similarity=0.011 Sum_probs=38.6
Q ss_pred CceeEEEEeeCC--CceEEEEecCCCCccceeeeecCC-----cEEEEEECC--CceEEEEEEE--cCe
Q 023664 93 KGVPTIITWNYG--GNEVAVEGSWDNWTSRRILHRSGK-----DHSILLVLP--SGVYHYKFIV--DGD 150 (279)
Q Consensus 93 ~~vpv~f~W~~g--g~~V~V~GSFnnW~~~i~L~ks~~-----~f~~~l~Lp--pG~y~YKFiV--DG~ 150 (279)
..+.++|+=..+ -+.|+|.=.+++-....+|++.+. .|++.+.++ .+.+.|.|.+ +++
T Consensus 19 ~~~~~~lr~~~~~~~~~v~l~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 19 DQLLITLWLTGEDPPQRVMLRCEPDNEEYLLPMEKQRSQPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred CEEEEEEEEcCCCceEEEEEEEEcCCCEEEEEeEEeecCCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 455555544322 467888766666555678887532 388888885 7889999988 554
No 60
>COG3397 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.65 E-value=1.1e+02 Score=29.69 Aligned_cols=70 Identities=17% Similarity=0.364 Sum_probs=43.3
Q ss_pred eEEEEeeCCCc------eEEEEecCCCCccceeeeecCCc---EEEE--EECCCc-eEEEEEEE----------cCeeec
Q 023664 96 PTIITWNYGGN------EVAVEGSWDNWTSRRILHRSGKD---HSIL--LVLPSG-VYHYKFIV----------DGDWRY 153 (279)
Q Consensus 96 pv~f~W~~gg~------~V~V~GSFnnW~~~i~L~ks~~~---f~~~--l~LppG-~y~YKFiV----------DG~W~~ 153 (279)
+.+|+|...+. ++|| +=.+|++..||.+++=+ |..+ .-+.|| .|.|.-.| =+.|..
T Consensus 115 ~~~f~w~~TapH~t~~w~yYi--TK~~wdpnkPLt~~dlEL~p~~~i~~~g~~p~~~~~~~~~iP~~rtGy~VI~~vWq~ 192 (308)
T COG3397 115 PQTFVWKATAPHNTAYWKYYI--TKPGWDPNKPLTWDDLELAPFCSITGVGLEPGKNYRHECTIPQDRTGYHVIYAVWQR 192 (308)
T ss_pred ceEEEEEeecCCCCcceEEEE--CCCCCCCCCCccHHhcccccceeecccccCCCcceeEEEecCCCCcccEEEEEEEEe
Confidence 67899986432 5788 56789998888876421 3322 334555 44444443 345554
Q ss_pred CCCCCeeeCCCCCeEeEEEec
Q 023664 154 IPDLPFVADELGGVCNLLDVH 174 (279)
Q Consensus 154 dp~~P~~~D~~Gn~nNvl~V~ 174 (279)
. |..+.++|+|+|.
T Consensus 193 ~-------Dt~n~Fyn~iDv~ 206 (308)
T COG3397 193 A-------DTGNAFYNCIDVN 206 (308)
T ss_pred c-------cCCCcceEEEEEe
Confidence 3 4445789999996
No 61
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.41 E-value=18 Score=37.95 Aligned_cols=27 Identities=26% Similarity=0.639 Sum_probs=22.0
Q ss_pred CCCceEEEEEEEcCeeec---CCCCCeeeC
Q 023664 136 LPSGVYHYKFIVDGDWRY---IPDLPFVAD 162 (279)
Q Consensus 136 LppG~y~YKFiVDG~W~~---dp~~P~~~D 162 (279)
-..|.|+|||.++|+|+. |+-+|+..+
T Consensus 114 ~yaGif~f~~w~~G~W~~VvIDD~LP~~~~ 143 (612)
T KOG0045|consen 114 NYAGIFHFRFWQNGEWVEVVIDDRLPTSNG 143 (612)
T ss_pred ccceEEEEEEEeCCeEEEEEeeeecceEcC
Confidence 356999999999999964 777888654
No 62
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=44.88 E-value=15 Score=39.26 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=27.5
Q ss_pred EEEEeeCCCceEEEEecCCCCccce-eee-ecC-CcEEEEEE
Q 023664 97 TIITWNYGGNEVAVEGSWDNWTSRR-ILH-RSG-KDHSILLV 135 (279)
Q Consensus 97 v~f~W~~gg~~V~V~GSFnnW~~~i-~L~-ks~-~~f~~~l~ 135 (279)
..-.|..+++.|.++|+||||.... .|. |.. +.|++.+.
T Consensus 116 ~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~k~~~g~w~i~l~ 157 (757)
T KOG0470|consen 116 DFTEWAPLAEAVSLIGDFNNWNPSSNELKPKDDLGVWEIDLP 157 (757)
T ss_pred eeeeecccccccccccccCCCCCcccccCcccccceeEEecC
Confidence 3456888999999999999999852 222 322 46776654
No 63
>TIGR03009 plancto_dom_2 Planctomycetes uncharacterized domain TIGR03009. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to four proteins per genome. The function is unknown.
Probab=43.28 E-value=31 Score=31.46 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=12.7
Q ss_pred EEE-cCe--eecCCCCCeee
Q 023664 145 FIV-DGD--WRYIPDLPFVA 161 (279)
Q Consensus 145 FiV-DG~--W~~dp~~P~~~ 161 (279)
.|| ||+ |.+|+++..++
T Consensus 66 ~iVsDGk~lW~YDpdleQVT 85 (210)
T TIGR03009 66 AWICNGTAVYAYNGLAKTVT 85 (210)
T ss_pred EEEECCCEEEEECCChhhEE
Confidence 455 895 99999987643
No 64
>PLN02877 alpha-amylase/limit dextrinase
Probab=41.93 E-value=50 Score=36.65 Aligned_cols=50 Identities=18% Similarity=0.139 Sum_probs=33.9
Q ss_pred EEEEeeCCCceEEEEecCCCCcc-----ceeeeecCCcEEEEEEC-CCceEEEEEEEc
Q 023664 97 TIITWNYGGNEVAVEGSWDNWTS-----RRILHRSGKDHSILLVL-PSGVYHYKFIVD 148 (279)
Q Consensus 97 v~f~W~~gg~~V~V~GSFnnW~~-----~i~L~ks~~~f~~~l~L-ppG~y~YKFiVD 148 (279)
+.=.|...+++|.|.- |++|.. .++|.+.++.|++.+.- ..| ..|+|.|+
T Consensus 225 ~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~~~~GVWsv~v~~~~~G-~~Y~Y~V~ 280 (970)
T PLN02877 225 SLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLKESNGVWSVEGPKSWEG-CYYVYEVS 280 (970)
T ss_pred EEEEECCCCCEEEEEE-ecCCCCccceEEecccCCCCEEEEEeccCCCC-CeeEEEEe
Confidence 3346888899999985 565532 24677667899988763 345 34777776
No 65
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=40.57 E-value=65 Score=25.10 Aligned_cols=48 Identities=21% Similarity=0.440 Sum_probs=23.5
Q ss_pred CCceeEEEEeeCCC---ceEEEEecCCCCccceeeeecCCcEEEEE-ECCCceEEEE
Q 023664 92 EKGVPTIITWNYGG---NEVAVEGSWDNWTSRRILHRSGKDHSILL-VLPSGVYHYK 144 (279)
Q Consensus 92 ~~~vpv~f~W~~gg---~~V~V~GSFnnW~~~i~L~ks~~~f~~~l-~LppG~y~YK 144 (279)
+.+.+++|+|...+ .++.+.+ -|.. ..+ ..++.+++.+ .+.+|+|+|-
T Consensus 40 ~~G~~v~l~~~N~~~~~h~~~i~~---~~~~-~~l-~~g~~~~~~f~~~~~G~y~~~ 91 (104)
T PF13473_consen 40 KAGQPVTLTFTNNDSRPHEFVIPD---LGIS-KVL-PPGETATVTFTPLKPGEYEFY 91 (104)
T ss_dssp ETTCEEEEEEEE-SSS-EEEEEGG---GTEE-EEE--TT-EEEEEEEE-S-EEEEEB
T ss_pred cCCCeEEEEEEECCCCcEEEEECC---CceE-EEE-CCCCEEEEEEcCCCCEEEEEE
Confidence 45667888887532 3333333 1111 123 3345566554 7899998873
No 66
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=40.18 E-value=62 Score=24.38 Aligned_cols=48 Identities=15% Similarity=0.210 Sum_probs=27.1
Q ss_pred eEEEEeeCC-CceEE-EEecCCCCccceeeeecCCcEEEEEECCCceEEEE
Q 023664 96 PTIITWNYG-GNEVA-VEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYK 144 (279)
Q Consensus 96 pv~f~W~~g-g~~V~-V~GSFnnW~~~i~L~ks~~~f~~~l~LppG~y~YK 144 (279)
.++|++... +..|. ..|.+.++...-.+...+..|+.++. .+|.|.|.
T Consensus 20 tVt~~N~d~~~Hnv~~~~g~~~~~~~~~~~~~~g~~~~~tf~-~~G~y~y~ 69 (83)
T TIGR02657 20 TVTWINREAMPHNVHFVAGVLGEAALKGPMMKKEQAYSLTFT-EAGTYDYH 69 (83)
T ss_pred EEEEEECCCCCccEEecCCCCccccccccccCCCCEEEEECC-CCEEEEEE
Confidence 456666643 56664 44555444322234445566776654 57988885
No 67
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=36.28 E-value=1.1e+02 Score=25.12 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=26.1
Q ss_pred CceeEEEEeeCCCceEEEE-ecCCCCccceeeeecCCcEEEEEECCCceEEEE
Q 023664 93 KGVPTIITWNYGGNEVAVE-GSWDNWTSRRILHRSGKDHSILLVLPSGVYHYK 144 (279)
Q Consensus 93 ~~vpv~f~W~~gg~~V~V~-GSFnnW~~~i~L~ks~~~f~~~l~LppG~y~YK 144 (279)
.+-.|+|+|...+..|... +..- +....-....+..|+.++. .+|+|.|.
T Consensus 21 ~GdTV~f~n~d~~Hnv~~~~~~~p-~g~~~~~s~~g~~~~~tF~-~~G~Y~Y~ 71 (116)
T TIGR02375 21 PGDTVTFVPTDKGHNVETIKGMIP-EGAEAFKSKINEEYTVTVT-EEGVYGVK 71 (116)
T ss_pred CCCEEEEEECCCCeeEEEccCCCc-CCcccccCCCCCEEEEEeC-CCEEEEEE
Confidence 3456889998777776642 2111 1110000122445666665 46888875
No 68
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=35.82 E-value=1e+02 Score=27.53 Aligned_cols=54 Identities=19% Similarity=0.437 Sum_probs=32.0
Q ss_pred CceeEEEEeeCCCceEEEEecCCCCccceeeeecCC-cEEEEEEC-CCceEEEEEE--Ec--CeeecCC
Q 023664 93 KGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGK-DHSILLVL-PSGVYHYKFI--VD--GDWRYIP 155 (279)
Q Consensus 93 ~~vpv~f~W~~gg~~V~V~GSFnnW~~~i~L~ks~~-~f~~~l~L-ppG~y~YKFi--VD--G~W~~dp 155 (279)
..+-..+.|...+. ..|+. .+|+..++ .|...+.+ ..|.|+|+.. +| +.|+++-
T Consensus 41 D~l~A~l~~r~~~~--------~~w~~-vpM~~~gnDrW~a~f~~~~~G~~~f~VeAW~D~faTW~~~~ 100 (187)
T PF11896_consen 41 DALAAELLWRHPGE--------REWQE-VPMTPLGNDRWEASFTPDRPGRYEFRVEAWVDHFATWRHDL 100 (187)
T ss_dssp S-EEEEEEEE-TTS---------B-----B-EESTS-EEEEEEE--SSEEEEEEEEEEE-HHHHHHHHH
T ss_pred CcEEEEEEEECCCC--------Cccee-eccccCCCCEEEEEEECCCceeEEEEEEEEeccHHHHHHhh
Confidence 45666667765433 34887 79998776 69998887 4699999987 57 6787764
No 69
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=32.25 E-value=1.3e+02 Score=24.74 Aligned_cols=49 Identities=20% Similarity=0.483 Sum_probs=27.6
Q ss_pred ceeEEEEeeC--CCceEEEEecCCCCccceeeeecCCcEEEEEECCCceEEEE
Q 023664 94 GVPTIITWNY--GGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYK 144 (279)
Q Consensus 94 ~vpv~f~W~~--gg~~V~V~GSFnnW~~~i~L~ks~~~f~~~l~LppG~y~YK 144 (279)
+-.|+|+|+. .+..|...+. ..|.....+...+..|+.++. .+|+|.|.
T Consensus 49 GdTVtw~~~~d~~~HnV~s~~~-~~f~s~~~~~~~G~t~s~Tf~-~~G~Y~Y~ 99 (115)
T TIGR03102 49 GTTVVWEWTGEGGGHNVVSDGD-GDLDESERVSEEGTTYEHTFE-EPGIYLYV 99 (115)
T ss_pred CCEEEEEECCCCCCEEEEECCC-CCccccccccCCCCEEEEEec-CCcEEEEE
Confidence 4467788875 3466654311 134432122234557887775 57998886
No 70
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=31.66 E-value=51 Score=26.02 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=15.7
Q ss_pred EEEEECCCceEEEEEEEcC
Q 023664 131 SILLVLPSGVYHYKFIVDG 149 (279)
Q Consensus 131 ~~~l~LppG~y~YKFiVDG 149 (279)
+..+.|+.|+|..+|...+
T Consensus 92 ~~~v~l~~G~h~i~l~~~~ 110 (125)
T PF03422_consen 92 SVSVKLPAGKHTIYLVFNG 110 (125)
T ss_dssp EEEEEEESEEEEEEEEESS
T ss_pred EEEEeeCCCeeEEEEEEEC
Confidence 4568888999999999875
No 71
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=27.62 E-value=60 Score=26.31 Aligned_cols=20 Identities=40% Similarity=0.908 Sum_probs=16.8
Q ss_pred CC-CceEEEEEEEcCeeecCCC
Q 023664 136 LP-SGVYHYKFIVDGDWRYIPD 156 (279)
Q Consensus 136 Lp-pG~y~YKFiVDG~W~~dp~ 156 (279)
=| .|-|||.|. +|+|++..+
T Consensus 66 SpisG~~hf~~~-~~~W~~~r~ 86 (109)
T PF01491_consen 66 SPISGPFHFDYD-DGKWIDTRD 86 (109)
T ss_dssp ETTTEEEEEEEE-SSSEEETTT
T ss_pred cccCCceEEEEc-CCEEEECCC
Confidence 46 799999999 999998764
No 72
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=27.46 E-value=91 Score=24.49 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=23.3
Q ss_pred CCcEEEEEECCCceEEEEEEEcCeeecCCCCCe
Q 023664 127 GKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPF 159 (279)
Q Consensus 127 ~~~f~~~l~LppG~y~YKFiVDG~W~~dp~~P~ 159 (279)
++.=++.|+|+||+|....+. |.+.+-+..|.
T Consensus 50 ~Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~~ 81 (87)
T PF14347_consen 50 KGQTELNIELPPGKHTLTLQL-GDGDHVPHDPP 81 (87)
T ss_pred CCEEEEEEEeCCCCEEEEEEe-CCCCcccCCCc
Confidence 345567799999999999887 55556555553
No 73
>smart00606 CBD_IV Cellulose Binding Domain Type IV.
Probab=26.61 E-value=81 Score=25.16 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=13.1
Q ss_pred EEEECCCceEEEEEEEcC
Q 023664 132 ILLVLPSGVYHYKFIVDG 149 (279)
Q Consensus 132 ~~l~LppG~y~YKFiVDG 149 (279)
+.+.+..|.|..+|+..|
T Consensus 101 ~~v~~~~G~~~l~~~~~~ 118 (129)
T smart00606 101 ATVTLPAGVHDVYLVFKG 118 (129)
T ss_pred EEEccCCceEEEEEEEEC
Confidence 446677899888877654
No 74
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.90 E-value=68 Score=33.47 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=26.3
Q ss_pred CcEEEEEECCCc-eEEEEEEEcCe----eecCCCCCeeeC
Q 023664 128 KDHSILLVLPSG-VYHYKFIVDGD----WRYIPDLPFVAD 162 (279)
Q Consensus 128 ~~f~~~l~LppG-~y~YKFiVDG~----W~~dp~~P~~~D 162 (279)
+.|-+...++|| .|.|+|.||++ |-++.....-.+
T Consensus 98 G~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~ 137 (563)
T KOG1263|consen 98 GVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRAT 137 (563)
T ss_pred CCccccCCcCCCCeEEEEEEeCCcceeEEEeecccccccc
Confidence 367788999999 69999999943 777766655333
No 75
>PLN03023 Expansin-like B1; Provisional
Probab=25.11 E-value=2.3e+02 Score=26.62 Aligned_cols=51 Identities=16% Similarity=0.318 Sum_probs=35.0
Q ss_pred ceeEEEEeeCC-C--ceEEEEec-CCCCccceeeeec-CCcEEEEEECCCceEEEEEEEc
Q 023664 94 GVPTIITWNYG-G--NEVAVEGS-WDNWTSRRILHRS-GKDHSILLVLPSGVYHYKFIVD 148 (279)
Q Consensus 94 ~vpv~f~W~~g-g--~~V~V~GS-FnnW~~~i~L~ks-~~~f~~~l~LppG~y~YKFiVD 148 (279)
-.-+.+.+.+| | ..|.|.|+ =.+|. +|.|+ +..|.+... +.|.+.+||.|.
T Consensus 161 yl~vlv~~vgG~GdI~~V~Ik~~~~~~W~---~M~rnwGa~W~~~~~-l~Gp~slrf~v~ 216 (247)
T PLN03023 161 YLAIVMLYQAGQNDILAVEIWQEDCKEWR---GMRKAYGAVWDMPNP-PKGPITLRFQVS 216 (247)
T ss_pred eEEEEEEEcCCCccEEEEEEEecCCCCce---ECccCCcceeEcCCC-CCCceeEEEEEE
Confidence 35566666553 2 46788884 34676 58887 567988644 469999999885
No 76
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=24.98 E-value=44 Score=27.06 Aligned_cols=19 Identities=26% Similarity=0.767 Sum_probs=15.2
Q ss_pred CCceEEEEEEEcCeeecCCC
Q 023664 137 PSGVYHYKFIVDGDWRYIPD 156 (279)
Q Consensus 137 ppG~y~YKFiVDG~W~~dp~ 156 (279)
|.|-|||.|. ||.|++.-+
T Consensus 65 p~G~~hf~~~-~~~W~~~r~ 83 (105)
T cd00503 65 KVGGYHFDYK-NGKWICTRS 83 (105)
T ss_pred CCCCccceec-CCEEEECCC
Confidence 4488999995 999998754
No 77
>PF14121 DUF4289: Domain of unknown function (DUF4289)
Probab=24.92 E-value=56 Score=34.01 Aligned_cols=41 Identities=20% Similarity=0.270 Sum_probs=33.4
Q ss_pred CCCCCCCCCeEeecceeeecccC-CCceEEEeeeeEecceeE
Q 023664 229 DEASSSKPKHVVLNHVFVDDGWK-SKSVVALGLTHRFQSKYV 269 (279)
Q Consensus 229 d~~~Lp~P~HVvLNHLy~~si~~-~~~vl~l~~T~Ryk~KyV 269 (279)
...+|+.|.-++-|.||.+..-. |-=-+-+|++-||.+||-
T Consensus 494 ~~~il~lP~~~~~~~lYy~~~lfkk~L~lq~G~~~~YfT~Y~ 535 (614)
T PF14121_consen 494 GEDILPLPEFVTRNNLYYQFKLFKKALFLQTGFDVRYFTKYY 535 (614)
T ss_pred CCCcCccCeEEEEeEEEEEchhhhhhheeeeeeEEEEeeccc
Confidence 46889999999999999987644 333346999999999984
No 78
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=24.67 E-value=51 Score=26.43 Aligned_cols=18 Identities=44% Similarity=1.110 Sum_probs=14.8
Q ss_pred CceEEEEEEEcCeeecCCC
Q 023664 138 SGVYHYKFIVDGDWRYIPD 156 (279)
Q Consensus 138 pG~y~YKFiVDG~W~~dp~ 156 (279)
.|-|||.| +||+|++..+
T Consensus 66 sGp~hfd~-~~~~Wi~~r~ 83 (97)
T TIGR03422 66 SGPKRYDY-VNGEWIYLRD 83 (97)
T ss_pred CCCcceee-cCCEEEECCC
Confidence 58899999 4999998754
No 79
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=23.78 E-value=72 Score=25.87 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=19.3
Q ss_pred eEEEEEEEcCeeecCCCCCeeeCCCC
Q 023664 140 VYHYKFIVDGDWRYIPDLPFVADELG 165 (279)
Q Consensus 140 ~y~YKFiVDG~W~~dp~~P~~~D~~G 165 (279)
.-.+||++||+-+--..-|-.-|..+
T Consensus 62 m~slRfL~dG~rI~~dqTP~dldmEd 87 (103)
T COG5227 62 MSSLRFLFDGKRIDLDQTPGDLDMED 87 (103)
T ss_pred cceeEEEEcceecCCCCChhhcCCcc
Confidence 46899999999877666676555544
No 80
>COG1477 ApbE Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=23.26 E-value=1.7e+02 Score=28.66 Aligned_cols=54 Identities=26% Similarity=0.210 Sum_probs=35.4
Q ss_pred CceEEEEe---cCCCCccceeeeecC-CcEEEEEEC------CCceEEEEEEEcCeeecCCCCC
Q 023664 105 GNEVAVEG---SWDNWTSRRILHRSG-KDHSILLVL------PSGVYHYKFIVDGDWRYIPDLP 158 (279)
Q Consensus 105 g~~V~V~G---SFnnW~~~i~L~ks~-~~f~~~l~L------ppG~y~YKFiVDG~W~~dp~~P 158 (279)
|.++.+.| +=..|+-.++.-... +....++.| .+|.|+-.|.+||++.+---+|
T Consensus 201 GG~i~~~G~~~~g~pW~IgI~~P~~~~~~~~~ii~l~d~aVaTSG~Y~r~~e~dG~ry~HilDP 264 (337)
T COG1477 201 GGEIRVIGKNPDGKPWRIGIQNPFAPRGAVQGIVPLKDGAVATSGDYERYFEVDGKRYHHILDP 264 (337)
T ss_pred CcceEEeccCCCCCCcEEEEeCCCCCCCceeEEEecCCceEEcccCceeEEEECCEEEeeecCC
Confidence 45888888 334688765433333 345555665 4799999999999876643333
No 81
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=23.15 E-value=1.4e+02 Score=29.79 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=26.0
Q ss_pred EEEecCCCCccceeee-e-cCCcEEEEEE--CCCceEEEEEEEcCe
Q 023664 109 AVEGSWDNWTSRRILH-R-SGKDHSILLV--LPSGVYHYKFIVDGD 150 (279)
Q Consensus 109 ~V~GSFnnW~~~i~L~-k-s~~~f~~~l~--LppG~y~YKFiVDG~ 150 (279)
.|.|+|. +....+. + .++.|+..+. .++|.|+.++.+||.
T Consensus 152 ~vvg~f~--DdG~g~DE~p~DGvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 152 IVVGEFE--DDGEGLDERPGDGIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred EEEEeec--cCCccCCCCCCCceEEEEeeccCCCceEEEEEEEcCc
Confidence 4666663 1112232 3 3467887655 589999999999985
No 82
>PLN00115 pollen allergen group 3; Provisional
Probab=22.23 E-value=3e+02 Score=22.92 Aligned_cols=52 Identities=21% Similarity=0.378 Sum_probs=35.7
Q ss_pred eeCCCceEEEEecC-CCCccceeeeec-CCcEEEEEE-CCCceEEEEEEEc-CeeecC
Q 023664 101 WNYGGNEVAVEGSW-DNWTSRRILHRS-GKDHSILLV-LPSGVYHYKFIVD-GDWRYI 154 (279)
Q Consensus 101 W~~gg~~V~V~GSF-nnW~~~i~L~ks-~~~f~~~l~-LppG~y~YKFiVD-G~W~~d 154 (279)
.+.+=.+|.|.++= .+|.. +|.|+ |..|.+.-. .+.|-+.+||.++ |.+.+.
T Consensus 43 ~~~dI~~V~Ik~~g~~~W~~--~M~rswGavW~~~s~~pl~GPlS~R~t~~~G~~~va 98 (118)
T PLN00115 43 TNVAISEVEIKEKGAKDWVD--DLKESSTNTWTLKSKAPLKGPFSVRFLVKGGGYRVV 98 (118)
T ss_pred EeCCEEEEEEeecCCCcccC--ccccCccceeEecCCCCCCCceEEEEEEeCCCEEEE
Confidence 34445788888863 46772 59997 568987543 3458999999886 665544
No 83
>PF07483 W_rich_C: Tryptophan-rich Synechocystis species C-terminal domain; InterPro: IPR011121 This entry represents a tryptophan-rich domain found in membrane proteins of Synechocystis and Bradyrhizobium; it is normally found in 2 to 3 copies.
Probab=22.08 E-value=2.8e+02 Score=22.83 Aligned_cols=55 Identities=20% Similarity=0.321 Sum_probs=35.5
Q ss_pred eEEEEeeCCCceEEEEecCCCCccceee-eecCCcEEEEEECCCceEEEEEEEcCeeecC
Q 023664 96 PTIITWNYGGNEVAVEGSWDNWTSRRIL-HRSGKDHSILLVLPSGVYHYKFIVDGDWRYI 154 (279)
Q Consensus 96 pv~f~W~~gg~~V~V~GSFnnW~~~i~L-~ks~~~f~~~l~LppG~y~YKFiVDG~W~~d 154 (279)
+..+++. | ..++.|+|.+|+. +.- +..++.|.+...-+--...+-..+|+.|.+-
T Consensus 22 ~~~lk~~--G-~~~~~g~~g~W~~-iaA~et~~GgyqVlWk~~~~~~~~vW~tDsngn~~ 77 (109)
T PF07483_consen 22 GPQLKYN--G-QPVVAGQFGGWQP-IAAEETSNGGYQVLWKNPGTDQFGVWNTDSNGNYI 77 (109)
T ss_pred ccEEEEC--C-EEEecCccCCcce-eeeEEecCCeeEEEEecCCCCeEEEEEecCCCCEE
Confidence 3445554 2 6689999999998 444 5566668887775533455556667655543
No 84
>PF10634 Iron_transport: Fe2+ transport protein; InterPro: IPR018470 This is a bacterial family of periplasmic proteins that are thought to function in high-affinity Fe2+ transport.; PDB: 3LZP_B 3LZN_B 3LZR_A 3LZQ_B 3LZO_A 3LZL_B 3PJN_A 3PJL_A 2O6D_A 2O6C_B ....
Probab=21.44 E-value=2.7e+02 Score=24.33 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=28.0
Q ss_pred eeCCCceEEEEecCCCCccceeeeecCC-cEEEEEEC-CCceEEEEEEEc
Q 023664 101 WNYGGNEVAVEGSWDNWTSRRILHRSGK-DHSILLVL-PSGVYHYKFIVD 148 (279)
Q Consensus 101 W~~gg~~V~V~GSFnnW~~~i~L~ks~~-~f~~~l~L-ppG~y~YKFiVD 148 (279)
-...+......|+|- +|.-+.+ -|-..+.| .+|+|+-+|.|+
T Consensus 74 i~~~~~~~~~~G~~m------PM~A~DGpHYG~Nvkl~g~G~Y~v~~~I~ 117 (151)
T PF10634_consen 74 ITKKGSGKVQEGTFM------PMVASDGPHYGDNVKLDGPGKYKVTFTIG 117 (151)
T ss_dssp EEETTTTEEEEEEEE------EEEETTEEEEEEEE-STSSEEEEEEEEEE
T ss_pred EEeCCCCeEEEEecc------eeecCcCccccccccCCCCccEEEEEEEc
Confidence 333333346666663 7887766 45566777 689999999997
No 85
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=21.27 E-value=80 Score=30.03 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=21.3
Q ss_pred ECCCceEEEEEEEcCeeec---CCCCCee
Q 023664 135 VLPSGVYHYKFIVDGDWRY---IPDLPFV 160 (279)
Q Consensus 135 ~LppG~y~YKFiVDG~W~~---dp~~P~~ 160 (279)
+-+.|.|.+||.++|+|+. |+..|+.
T Consensus 97 ~~~~G~y~vrl~~~G~w~~V~VDd~lP~~ 125 (318)
T smart00230 97 ENYAGIFHFRFWRFGKWVDVVIDDRLPTY 125 (318)
T ss_pred cccCCEEEEEEEECCEEEEEEecCCCeee
Confidence 3467999999999999875 7778864
No 86
>PF00648 Peptidase_C2: Calpain family cysteine protease This is family C2 in the peptidase classification. ; InterPro: IPR001300 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. Calpains are a family of cytosolic cysteine proteinases (see PDOC00126 from PROSITEDOC). Members of the calpain family are believed to function in various biological processes, including integrin-mediated cell migration, cytoskeletal remodeling, cell differentiation and apoptosis [, ]. The calpain family includes numerous members from C. elegans to mammals and with homologues in yeast and bacteria. The best characterised members are the m- and mu-calpains, both proteins are heterodimer composed of a large catalytic subunit and a small regulatory subunit. The large subunit comprises four domains (dI-dIV) while the small subunit has two domains (dV-dVI). Domain dI is a short region cleaved by autolysis, dII is the catalytic core, dIII is a C2-like domain, dIV consists of five calcium binding EF-hand motifs []. The crystal structure of calpain has been solved [, ]. The catalytic region consists of two distinct structural domains (dIIa and dIIb). dIIa contains a central helix flanked on three faces by a cluster of alpha-helices and is entirely unrelated to the corresponding domain in the typical thiol proteinases. The fold of dIIb is similar to the corresponding domain in other cysteine proteinases and contains two three-stranded anti-parallel beta-sheets. The catalytic triad residues (C,H,N) are located in dIIa and dIIb. The activation of the domain is dependent on the binding of two calcium atoms in two non EF-hand calcium binding sites located in the catalytic core, one close to the Cys active site in dIIa and one at the end of dIIb. Calcium-binding induced conformational changes in the catalytic domain which align the active site [][]. The profile covers the whole catalytic domain.; GO: 0004198 calcium-dependent cysteine-type endopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 2NQA_A 1KFU_L 1KFX_L 1QXP_B 2R9C_A 1TL9_A 2G8E_A 1KXR_B 2G8J_A 2NQG_A ....
Probab=20.26 E-value=84 Score=29.07 Aligned_cols=22 Identities=32% Similarity=0.828 Sum_probs=17.9
Q ss_pred CceEEEEEEEcCeeec---CCCCCe
Q 023664 138 SGVYHYKFIVDGDWRY---IPDLPF 159 (279)
Q Consensus 138 pG~y~YKFiVDG~W~~---dp~~P~ 159 (279)
.|.|.+||.+||+|+. |+-.|+
T Consensus 87 ~G~y~v~l~~~G~w~~V~VDd~lP~ 111 (298)
T PF00648_consen 87 NGIYTVRLFKNGEWREVTVDDRLPC 111 (298)
T ss_dssp SSEEEEEEEETTEEEEEEEES-EEE
T ss_pred CceeeEeeccCCeeeeeccchhhhc
Confidence 4999999999999974 666777
No 87
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=20.16 E-value=2.8e+02 Score=19.77 Aligned_cols=42 Identities=31% Similarity=0.295 Sum_probs=26.8
Q ss_pred EEEeeCCCceEEEEecCCCCccceeeeecCCcEEEEEECCCceEEEEEEEcCe
Q 023664 98 IITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGD 150 (279)
Q Consensus 98 ~f~W~~gg~~V~V~GSFnnW~~~i~L~ks~~~f~~~l~LppG~y~YKFiVDG~ 150 (279)
.|+=...|-+|||-|.+-+ ..++ ....|++|.|.+++.-+|-
T Consensus 5 ~V~s~p~gA~V~vdg~~~G---~tp~--------~~~~l~~G~~~v~v~~~Gy 46 (71)
T PF08308_consen 5 RVTSNPSGAEVYVDGKYIG---TTPL--------TLKDLPPGEHTVTVEKPGY 46 (71)
T ss_pred EEEEECCCCEEEECCEEec---cCcc--------eeeecCCccEEEEEEECCC
Confidence 3444456778888886655 1122 1223888888888888883
Done!