Query 023665
Match_columns 279
No_of_seqs 297 out of 1565
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 05:43:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023665.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023665hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3752 Steroid 5-alpha reduct 100.0 4.8E-61 1E-65 420.7 26.0 244 3-253 20-271 (272)
2 PF06966 DUF1295: Protein of u 100.0 3.1E-60 6.8E-65 424.4 24.9 228 14-241 2-235 (235)
3 KOG4650 Predicted steroid redu 100.0 2.4E-49 5.3E-54 346.0 19.3 249 3-257 14-306 (311)
4 PF01222 ERG4_ERG24: Ergostero 99.8 1.3E-20 2.8E-25 181.7 13.8 157 81-248 259-431 (432)
5 COG2020 STE14 Putative protein 99.8 8.7E-20 1.9E-24 158.1 16.1 117 124-249 67-186 (187)
6 KOG1435 Sterol reductase/lamin 99.8 4.6E-19 1E-23 166.9 8.2 161 77-248 249-427 (428)
7 PF04191 PEMT: Phospholipid me 99.7 6.3E-16 1.4E-20 121.2 10.6 100 126-234 2-106 (106)
8 KOG2628 Farnesyl cysteine-carb 99.6 7.8E-16 1.7E-20 131.3 8.8 111 129-249 85-201 (201)
9 PF04140 ICMT: Isoprenylcystei 99.5 3.8E-13 8.3E-18 104.1 9.3 87 132-226 3-94 (94)
10 KOG1638 Steroid reductase [Lip 99.4 7.6E-13 1.6E-17 116.5 11.3 110 125-248 147-256 (257)
11 PLN02392 probable steroid redu 99.4 2.9E-12 6.3E-17 115.7 11.2 110 125-248 150-259 (260)
12 PF02544 Steroid_dh: 3-oxo-5-a 99.3 2.8E-11 6E-16 101.4 11.1 111 124-248 39-149 (150)
13 PLN02560 enoyl-CoA reductase 99.2 3.3E-10 7E-15 105.3 11.9 115 125-247 192-307 (308)
14 PLN03164 3-oxo-5-alpha-steroid 99.1 1.2E-09 2.7E-14 101.0 11.8 113 124-248 208-322 (323)
15 COG1755 Uncharacterized protei 99.0 4.2E-09 9.1E-14 88.0 10.0 97 122-227 66-168 (172)
16 KOG1640 Predicted steroid redu 97.9 0.00064 1.4E-08 62.0 16.3 109 126-248 193-303 (304)
17 KOG1639 Steroid reductase requ 97.5 0.0003 6.5E-09 62.9 7.5 108 127-248 188-297 (297)
18 PF07298 NnrU: NnrU protein; 97.1 0.0018 4E-08 56.4 7.2 95 124-243 67-161 (191)
19 PLN02797 phosphatidyl-N-dimeth 90.6 0.7 1.5E-05 38.7 5.6 62 127-189 66-132 (164)
20 COG4094 Predicted membrane pro 86.1 0.6 1.3E-05 40.8 2.6 76 161-247 98-173 (219)
21 KOG4142 Phospholipid methyltra 71.8 27 0.00058 29.8 7.9 64 126-189 97-165 (208)
22 COG3162 Predicted membrane pro 42.2 1.7E+02 0.0036 22.9 7.5 63 80-143 12-80 (102)
23 TIGR00026 hi_GC_TIGR00026 deaz 40.0 22 0.00047 28.3 2.1 21 224-247 89-109 (113)
24 PRK07419 1,4-dihydroxy-2-napht 33.0 1.3E+02 0.0028 28.1 6.3 25 161-187 134-158 (304)
25 cd03737 SOCS_SOCS3 SOCS (suppr 28.6 40 0.00087 22.1 1.5 16 253-268 25-40 (42)
26 cd03735 SOCS_SOCS1 SOCS (suppr 27.8 45 0.00097 21.9 1.7 15 254-268 27-41 (43)
27 PF04075 DUF385: Domain of unk 27.4 54 0.0012 26.7 2.5 21 224-247 107-127 (132)
28 PF15113 TMEM117: TMEM117 prot 27.0 1.1E+02 0.0023 29.5 4.6 52 46-98 61-112 (415)
29 COG3462 Predicted membrane pro 25.7 2.2E+02 0.0047 22.7 5.4 12 218-229 88-99 (117)
30 PF05975 EcsB: Bacterial ABC t 23.2 1.7E+02 0.0037 27.9 5.5 66 169-250 275-341 (386)
31 PRK13387 1,4-dihydroxy-2-napht 22.7 2.4E+02 0.0053 26.3 6.3 21 161-183 129-149 (317)
32 KOG3088 Secretory carrier memb 22.6 5.6E+02 0.012 24.0 8.3 25 83-107 188-216 (313)
33 TIGR00751 menA 1,4-dihydroxy-2 21.0 2.9E+02 0.0062 25.4 6.3 22 163-186 126-147 (284)
34 cd03734 SOCS_CIS1 SOCS (suppre 20.8 75 0.0016 20.6 1.7 15 254-268 25-39 (41)
No 1
>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only]
Probab=100.00 E-value=4.8e-61 Score=420.67 Aligned_cols=244 Identities=30% Similarity=0.589 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHHHHHHHhccceEEEeccccHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcCcchh
Q 023665 3 VCLQVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRR 82 (279)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~D~~w~~~~~~~~~~~~~~~~~~~~r~~l~~~~v~~W~~RL~~~l~~R~~~~geD~R 82 (279)
++..+....+.|++|..+||.+++|..||.+++++++..+..+.+.+.|+.+++.++++||+||+.|+++|.+++|||+|
T Consensus 20 al~~~v~~~~~w~vs~~tg~~~~VD~~Wg~~~~~~a~~~~l~~~~~~~r~~l~~~LvtlWs~RL~~hl~rR~~~~geD~R 99 (272)
T COG3752 20 ALALAVLFAVAWAVSRRTGNYSWVDAVWGGGFVAVAVVLALLGEGDPRRRWLLLFLVTLWSLRLGWHLYRRTRGKGEDPR 99 (272)
T ss_pred HHHHHHHHHHHHHHHHhhcCcceeehhccchHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChH
Confidence 45567778999999999999999999999999999998888877777899999999999999999999999999999999
Q ss_pred hHHHHhhhhH-------HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 023665 83 FDEMRSNLGK-------LAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSP 155 (279)
Q Consensus 83 y~~~r~~~~~-------~~~~~~~Q~~~~~l~~lP~~~~~~~~~~~~~~~~~~~G~~l~~~G~~le~~Ad~ql~~f~~~~ 155 (279)
|.++|+++++ ++.+|.+|+++.+++++|+++++.++ ++++.+.|++|++++++|+.+|..+|.|+..||++|
T Consensus 100 Y~~l~~~wg~t~~~~~~l~~vf~lQ~ll~~ilalpi~~a~~~~-~~~~~~~d~~g~~iwivg~~fE~lgD~QL~~Fk~~P 178 (272)
T COG3752 100 YVNLRQRWGKTIYPLKALFIVFGLQALLLFILALPIYLAALNG-PREFGWWDVIGLAIWIVGIVFEALGDAQLWVFKKDP 178 (272)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHHhCh
Confidence 9999998764 56778999999999999999988664 557899999999999999999999999999999999
Q ss_pred CCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHHHHHHHHHHHHHhCch-HHHHHHHHHcCCchhH
Q 023665 156 ENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIP-LLEESADKKFGNMPAY 234 (279)
Q Consensus 156 ~~~~~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~w~~~~~~i~~~~ll~~~s~i~-~~E~~l~~kyG~~~~Y 234 (279)
+|+|+++++|+||+|||||||||.|+|+|+++++.+-.. ..| ++.+|++|+.++.++||+| +||+++++| |+|
T Consensus 179 ~nkgkll~~GLWr~tRHPNYFgE~l~Wwg~~Lia~~~~~-~~W-~~~sPllmt~LL~~vSGvp~l~ekm~k~r----~~f 252 (272)
T COG3752 179 RNKGKLLDTGLWRWTRHPNYFGEALVWWGFYLIAISEWL-LLW-AVASPLLMTWLLVHVSGVPPLEEKMLKSR----PGF 252 (272)
T ss_pred hhccccccccceecccCcchHHHHHHHHHHHHHHHhhhh-Hhh-hcccHHHHHHHHHHhcCCChHHHHHhccc----HhH
Confidence 999999999999999999999999999999999875221 123 5689999999999999999 555444444 899
Q ss_pred HHHHhhCCcccccCCCcCC
Q 023665 235 RLYKKTTSPLIPLPPVVYG 253 (279)
Q Consensus 235 ~~Y~~~t~~~iP~~~~~~~ 253 (279)
+|||+||++|+|++|++..
T Consensus 253 r~Yq~rt~~F~P~~~k~~~ 271 (272)
T COG3752 253 REYQRRTNAFFPRPPKKAL 271 (272)
T ss_pred HHHHHHhcccCCCCCcccC
Confidence 9999999999999998754
No 2
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=100.00 E-value=3.1e-60 Score=424.37 Aligned_cols=228 Identities=43% Similarity=0.932 Sum_probs=211.6
Q ss_pred HHHHHHhccceEEEeccccHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcCcchhhHHHHhhhh--
Q 023665 14 FVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLG-- 91 (279)
Q Consensus 14 ~~~~~~~~~~~~~D~~w~~~~~~~~~~~~~~~~~~~~r~~l~~~~v~~W~~RL~~~l~~R~~~~geD~Ry~~~r~~~~-- 91 (279)
|++|..++|+++||++||++++++++.++..+++.+.|++++++++++||+||+.|+++|..++|||+||+++|++++
T Consensus 2 w~~s~~~~n~s~vD~~ws~~~~~~a~~~~~~~~~~~~r~~lv~~lv~~W~~RL~~~l~~R~~~~~eD~R~~~~r~~~~~~ 81 (235)
T PF06966_consen 2 WIISLATRNESIVDILWSFGFVLVAWVYALFSDGFSPRQLLVAALVIVWGLRLGYFLFRRNLGWGEDWRYDDLRKKWGEW 81 (235)
T ss_pred eeehHhhCCCCEEECcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHhcCcc
Confidence 778999999999999999999999999998888889999999999999999999999999988899999999999863
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccCcc
Q 023665 92 ----KLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFW 167 (279)
Q Consensus 92 ----~~~~~~~~Q~~~~~l~~lP~~~~~~~~~~~~~~~~~~~G~~l~~~G~~le~~Ad~ql~~f~~~~~~~~~lvt~Gly 167 (279)
+++.+|++|+++++++++|+++++..+.+++++..+++|++++++|+.+|.+||.||.+||++|+|+|++|++|+|
T Consensus 82 ~~~~~~~~~~~~q~~~~~~~~lP~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~E~~AD~Q~~~fk~~~~n~g~~~~~GLw 161 (235)
T PF06966_consen 82 FWPFSFFFIFLFQALLVWLISLPVYLANSSPPNPPLNWLDILGIALFLIGFLLETVADQQKYRFKKDPANKGKFCTTGLW 161 (235)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCccccCCee
Confidence 4678899999999999999999886555567899999999999999999999999999999999999999999999
Q ss_pred ccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHHHHHHHHHHHHHhCchHHHHHHHHHcCCchhHHHHHhhC
Q 023665 168 KYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTT 241 (279)
Q Consensus 168 ~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~w~~~~~~i~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y~~Y~~~t 241 (279)
+|||||||+||+++|+|+++++.+...+..++++++|++++.++++++|+|..|+++.+|||++|+|+||||+|
T Consensus 162 ~~sRHPNYfGE~l~W~g~~~~a~~~~~~~~~~~~~~pl~~~~~l~~~sgip~~E~~~~~kyg~~~~Y~~Y~~~t 235 (235)
T PF06966_consen 162 RYSRHPNYFGEILFWWGIYLAAISSGSGWLWWAIIGPLFMTLLLLFVSGIPLLEKRMAKKYGDRPAYQEYQRRT 235 (235)
T ss_pred eeeeCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCHhHHHHHhcC
Confidence 99999999999999999999987764443456889999999999999999999999999999999999999997
No 3
>KOG4650 consensus Predicted steroid reductase [General function prediction only]
Probab=100.00 E-value=2.4e-49 Score=345.97 Aligned_cols=249 Identities=61% Similarity=1.099 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHHHHHHHhccceEEE-eccccHHHHHHHHHHHHh------------------------------CCchhH
Q 023665 3 VCLQVGYQLLFFVITALFKFDKVTD-FAGSTNFIIIALLTLILK------------------------------GSWHFR 51 (279)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~D-~~w~~~~~~~~~~~~~~~------------------------------~~~~~r 51 (279)
+++...+|.++|++-...|..+..| .+.+..|++.+++++..+ .-.+.|
T Consensus 14 vav~~~l~~i~f~~t~l~~~~~~tD~~ant~~Fvi~~vLt~vlgl~~~s~w~~d~~W~ilp~~~~~~f~~~~l~n~~~~R 93 (311)
T KOG4650|consen 14 VAVSVYLQFIFFVITALFKFDQVTDFFANTTNFVILAVLTLVLGLWGVSVWTKDRLWHILPTAFSLHFLFYGLYNIASRR 93 (311)
T ss_pred eeeeccHHHHHHHHHHHhccchHHHHHcCCchHHHHHHHHHHHHhccccceecccceeechHHHHHHHhhcchhhhhhHH
Confidence 4556677888888888888888889 666667777777666541 112459
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-hcCcC-cchhhHHHHhhhhH------HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 023665 52 QVVLTFLAVVWGLRLALFLLMR-ILNWG-EDRRFDEMRSNLGK------LAIFWIFQAVWVWTVSLPVTVVNASDRDPSV 123 (279)
Q Consensus 52 ~~l~~~~v~~W~~RL~~~l~~R-~~~~g-eD~Ry~~~r~~~~~------~~~~~~~Q~~~~~l~~lP~~~~~~~~~~~~~ 123 (279)
+++++.++++|++|||+|.++| ++.+| ||+||+++|++.+| ++.+|.+|+++++.+++|+|+++++..+..+
T Consensus 94 ~mIl~~L~~vWs~RLt~ny~rr~~~~wG~ED~Rf~d~R~~~gK~~~~~~~f~~~ifQ~v~l~~v~lPlyiv~~~d~~r~f 173 (311)
T KOG4650|consen 94 QMILTFLVVVWSLRLTYNYLRRGILQWGAEDRRFDDVRQNIGKWIYLFHLFYFWIFQAVWLWTVSLPLYIVNASDGGRAF 173 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCchhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhcchheeeecCCcccc
Confidence 9999999999999999999999 67888 99999999999998 6788999999999999999999887655569
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCCCCc-ccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHH
Q 023665 124 QAVDVIGWIMWSVGVSIEAIADQQKLSFK---NSPENRGK-WCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWL 199 (279)
Q Consensus 124 ~~~~~~G~~l~~~G~~le~~Ad~ql~~f~---~~~~~~~~-lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~w~ 199 (279)
++.|++|..+++.|+++|..||.|+.+|+ .+++|.|| .|++|+|||||||||+||++.|||+++++.++..|..|.
T Consensus 174 ~~wD~I~~~m~~~gfvie~~ADqQ~~~f~~~~~~l~~~Gk~~~d~GlwrySRHPNylgEqL~Wwglyvfa~~~~egl~wt 253 (311)
T KOG4650|consen 174 GPWDVIGWTMWVFGFVIEALADQQKLSFKEARYDLENLGKGWCDVGLWRYSRHPNYLGEQLLWWGLYVFAAPVLEGLEWT 253 (311)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhcCHHHcCCccccccceeeccCccHHHHHHHHHHHHHHHhhhhccchHH
Confidence 99999999999999999999999999998 56677787 999999999999999999999999999998877776687
Q ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHcCCchhHHHHHhhCCcccc-cCCCcCCCCcH
Q 023665 200 VILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIP-LPPVVYGNLPW 257 (279)
Q Consensus 200 ~~~~~i~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y~~Y~~~t~~~iP-~~~~~~~~~p~ 257 (279)
.+.++.++++++.+. ...|+...||| +.|+.|||+|+++|| ..|......+|
T Consensus 254 vi~~lv~~~~l~~~t---~lie~~~v~~~---~aYR~Yqktts~~ip~~f~sh~d~~~d 306 (311)
T KOG4650|consen 254 VIAGLVFLTLLLLFT---SLIELLEVEKY---PAYRVYQKTTSRFIPRLFPSHWDNVDD 306 (311)
T ss_pred HHHHHHHHHHHHHHH---hhhhhhhhhhh---HHHHHHHhcccccccccchhhHhcCCc
Confidence 777787777666554 45566666787 899999999999999 44544444433
No 4
>PF01222 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 family; InterPro: IPR001171 The two fungal enzymes, C-14 sterol reductase (gene ERG24 in budding yeast and erg3 in Neurospora crassa) and C-24(28) sterol reductase (gene ERG4 in budding yeast and sts1 in fission yeast), are involved in ergosterol biosynthesis. They act by reducing double bonds in precursors of ergosterol []. These proteins are highly hydrophobic and seem to contain seven or eight transmembrane regions. Chicken lamin B receptor that is thought to anchor the lamina to the inner nuclear membrane belongs to this family.; GO: 0016020 membrane
Probab=99.84 E-value=1.3e-20 Score=181.73 Aligned_cols=157 Identities=24% Similarity=0.298 Sum_probs=118.8
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcHH-HHHH-HHHHHHHHHHHHHHHHHHHhcCCCCC--
Q 023665 81 RRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAV-DVIG-WIMWSVGVSIEAIADQQKLSFKNSPE-- 156 (279)
Q Consensus 81 ~Ry~~~r~~~~~~~~~~~~Q~~~~~l~~lP~~~~~~~~~~~~~~~~-~~~G-~~l~~~G~~le~~Ad~ql~~f~~~~~-- 156 (279)
..+|...++.|.+..++.+-.+....++.+.|++.+ + .++++. ..++ .++.++|..+...||.||..||++|+
T Consensus 259 ~t~Di~~d~fGfml~~g~l~~vPf~Yt~~~~yl~~~-p--~~l~~~~~~~~i~~l~~~gy~i~r~sn~QK~~FR~~p~~p 335 (432)
T PF01222_consen 259 TTMDITHDGFGFMLCFGDLVWVPFTYTLQARYLVDH-P--VELSWPTYAAAILALGLVGYYIFRGSNSQKNRFRRNPKDP 335 (432)
T ss_pred eeeeeeEcCccceeehhhHhhhhHhhhcceeEEEeC-C--ccCCcHHHHHHHHHHHHHHHHHHHHhchhHHHhcCCCCCC
Confidence 567788888886666655554555555555555543 2 245555 2343 35678999999999999999997642
Q ss_pred -----------CCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHHHHHHHHHHHHHhCchHHHHHHH
Q 023665 157 -----------NRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESAD 225 (279)
Q Consensus 157 -----------~~~~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~w~~~~~~i~~~~ll~~~s~i~~~E~~l~ 225 (279)
+..+|.++|.|+++|||||+||+++.+++++.+.- + +.+....|+++++++++. ..++|++|+
T Consensus 336 ~~~~~~~~~t~~G~~LL~SGwWg~~Rh~NY~gdil~a~aw~l~~gf---~-~~~pyfy~~~~~~lL~hR--~~RD~~rC~ 409 (432)
T PF01222_consen 336 KVIHLKYIPTKRGSKLLVSGWWGIARHPNYLGDILMALAWCLPCGF---S-SILPYFYPIFFTILLIHR--ARRDEERCR 409 (432)
T ss_pred cccccceeecCCCCeEEEcChhHhhcccchHHHHHHHHHHHHHHhc---C-ccHHHHHHHHHHHHHhhh--HHHHHHHHH
Confidence 23479999999999999999999999998886532 1 345667888888877765 589999999
Q ss_pred HHcCCchhHHHHHhhCC-cccccC
Q 023665 226 KKFGNMPAYRLYKKTTS-PLIPLP 248 (279)
Q Consensus 226 ~kyG~~~~Y~~Y~~~t~-~~iP~~ 248 (279)
+||| ++|+|||++|| ++||++
T Consensus 410 ~KYG--~~W~~Yc~~Vpy~~iP~i 431 (432)
T PF01222_consen 410 KKYG--KDWDEYCKRVPYRIIPGI 431 (432)
T ss_pred HhhC--HHHHHHHHhCCEEEeCCc
Confidence 9999 99999999998 899985
No 5
>COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=8.7e-20 Score=158.08 Aligned_cols=117 Identities=22% Similarity=0.292 Sum_probs=90.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHH
Q 023665 124 QAVDVIGWIMWSVGVSIEAIADQQKLSFKN---SPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLV 200 (279)
Q Consensus 124 ~~~~~~G~~l~~~G~~le~~Ad~ql~~f~~---~~~~~~~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~w~~ 200 (279)
.+...+|+.+..+|..+..++..++..... +++++++++++|+|+++|||+|+|.++..+|..+...+ ++.
T Consensus 67 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVttG~Y~~VRHP~Y~~~~l~~~g~~~~~~~------~~~ 140 (187)
T COG2020 67 SWIVGLGLLLVGLGLALRLWAMRTLGRSWTVSVKARKGHELVTTGPYSIVRHPIYLGLLLFALGTGLLLGS------LWA 140 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccCCCCCCeeEecCCcceecCcHHHHHHHHHHHHHHHHHh------HHH
Confidence 456778999999999999999999865432 23457789999999999999999999999999866432 333
Q ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHcCCchhHHHHHhhCCcccccCC
Q 023665 201 ILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLPP 249 (279)
Q Consensus 201 ~~~~i~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y~~Y~~~t~~~iP~~~ 249 (279)
+++.+.....+ +.-.+..||+.+.++|| ++|+||+++||+++|++.
T Consensus 141 l~~~~~~~~~~-~~~~i~~EEr~L~~~fg--~~Y~~Y~~rV~r~iP~~~ 186 (187)
T COG2020 141 LLIFVVLVALL-FLFRIREEERYLRAEFG--DEYREYRKRVPRLIPPLV 186 (187)
T ss_pred HHHHHHHHHHH-HHHHhhHHHHHHHHHhh--HHHHHHHHhCCccCCCCC
Confidence 32222222222 12357899999999999 999999999999999864
No 6
>KOG1435 consensus Sterol reductase/lamin B receptor [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.77 E-value=4.6e-19 Score=166.88 Aligned_cols=161 Identities=23% Similarity=0.358 Sum_probs=118.8
Q ss_pred cCcc---hhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcHHHHHHH-HHHHHHHHHHHHHHHHHHhcC
Q 023665 77 WGED---RRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGW-IMWSVGVSIEAIADQQKLSFK 152 (279)
Q Consensus 77 ~geD---~Ry~~~r~~~~~~~~~~~~Q~~~~~l~~lP~~~~~~~~~~~~~~~~~~~G~-~l~~~G~~le~~Ad~ql~~f~ 152 (279)
++|| ..+|..+++.|-+..++-+-.+.....+...|+..+ + .++++....++ ++.+.|+.+...||.||..||
T Consensus 249 w~E~~~l~TmDi~hd~FGfmL~fgd~v~vP~~Yt~~~~yL~~h-p--v~l~~~~a~~i~~l~l~gyyifr~an~QK~~FR 325 (428)
T KOG1435|consen 249 WNEELVLTTMDIAHDGFGFMLIFGDLVWVPFTYTLQALYLVSH-P--VELGWPMAVGILVLLLLGYYIFRGANAQKNEFR 325 (428)
T ss_pred hhhhhhcchhhhhccCcceeeeehhhcccceeeecceeeEEEC-c--cccchHHHHHHHHHHHhheeEeeccchhHHHHh
Confidence 4565 567777788776666665444444333333444433 2 35666555554 566889999999999999999
Q ss_pred CCC-------------CCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHHHHHHHHHHHHHhCchH
Q 023665 153 NSP-------------ENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPL 219 (279)
Q Consensus 153 ~~~-------------~~~~~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~w~~~~~~i~~~~ll~~~s~i~~ 219 (279)
+++ .+.+++.+||.|+++|||||+||++..+.+++.+.- + +.++...++++++++++. ..+
T Consensus 326 kn~~~~~~~~i~~i~t~~Gs~LL~SGwWG~aRh~nY~gD~i~alawslp~gf---~-s~lpyfy~iyf~~LLvhR--~~R 399 (428)
T KOG1435|consen 326 KNPGDPKLKNIKTIYTSTGSKLLVSGWWGVARHPNYLGDLIMALAWSLPCGF---N-SPLPYFYPIYFTLLLVHR--AAR 399 (428)
T ss_pred cCCCCCccccccceEeccCCeEEeechhhhhcCcCcHHHHHHHHHHHHhccC---C-CCcchHHHHHHHHHHHHH--Hhh
Confidence 873 235689999999999999999999999988876521 1 223556677877777765 578
Q ss_pred HHHHHHHHcCCchhHHHHHhhCC-cccccC
Q 023665 220 LEESADKKFGNMPAYRLYKKTTS-PLIPLP 248 (279)
Q Consensus 220 ~E~~l~~kyG~~~~Y~~Y~~~t~-~~iP~~ 248 (279)
+|.+|++||| ++|+||+++|| +++|++
T Consensus 400 De~rC~~KYG--~~W~~Yc~~VpyriiP~V 427 (428)
T KOG1435|consen 400 DEHRCRSKYG--EDWEEYCRKVPYRILPYV 427 (428)
T ss_pred hHHHHHHHHh--hhHHHHHhhCCcccCCCC
Confidence 9999999999 99999999998 899975
No 7
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=99.66 E-value=6.3e-16 Score=121.25 Aligned_cols=100 Identities=25% Similarity=0.440 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC---C--CCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHH
Q 023665 126 VDVIGWIMWSVGVSIEAIADQQKLSFKNS---P--ENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLV 200 (279)
Q Consensus 126 ~~~~G~~l~~~G~~le~~Ad~ql~~f~~~---~--~~~~~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~w~~ 200 (279)
..++|+++.++|..+...+..++....+. + +++++++|+|+|+++|||+|+|.++.++|.+++..+ ++.
T Consensus 2 ~~~~G~~l~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~Lvt~G~Y~~vRhPmY~g~~l~~~G~~l~~~s------~~~ 75 (106)
T PF04191_consen 2 RFVLGLLLILAGIALAIWAFKALGRFGTYYGDFFGREPQRLVTTGPYRYVRHPMYLGFLLILLGIALMLGS------WLG 75 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCeecCCcccccCCcccccCCccCcCChHHHHHHHHHHHHHHHhCc------HHH
Confidence 35789999999999999998888765432 1 345679999999999999999999999999987532 222
Q ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHcCCchhH
Q 023665 201 ILGPIFLTLLLLFISGIPLLEESADKKFGNMPAY 234 (279)
Q Consensus 201 ~~~~i~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y 234 (279)
++..+...+ ......+..||+.+.++|| ++|
T Consensus 76 l~~~~~~~~-~~~~~~~~~EE~~L~~~fG--~~Y 106 (106)
T PF04191_consen 76 LLLAVLAFL-LYYIFIIRFEERFLERRFG--EEY 106 (106)
T ss_pred HHHHHHHHH-HHHHHHHHhHHHHHHHHhC--cCC
Confidence 222222222 2222234588889999999 776
No 8
>KOG2628 consensus Farnesyl cysteine-carboxyl methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=7.8e-16 Score=131.31 Aligned_cols=111 Identities=23% Similarity=0.323 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-----CCCCCCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHH
Q 023665 129 IGWIMWSVGVSIEAIADQQKLSF-----KNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILG 203 (279)
Q Consensus 129 ~G~~l~~~G~~le~~Ad~ql~~f-----~~~~~~~~~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~w~~~~~ 203 (279)
.|+.+..+|-+.+..|..+.... ++++.++++++++|+|+|+|||.|.|-++-+.|..++.++ .++++.
T Consensus 85 ~gl~~~~~Ge~~r~~amitag~~f~H~va~~k~~~h~lv~~GvY~y~RHPsY~g~flw~~gtq~~L~n------pis~v~ 158 (201)
T KOG2628|consen 85 LGLLMLILGEALRKIAMITAGTSFTHYVATKKVSDHKLVTSGVYAYVRHPSYVGFFLWAAGTQTMLCN------PISLVA 158 (201)
T ss_pred CceeeeehHHHHHHHHHHHHHHHHHHHHhhccccCceeEeccchhheeCchHHHHHHHHHHHHHHHhC------HHHHHH
Confidence 67777788888888887777432 2345567889999999999999999998888888776543 333332
Q ss_pred HHHHHHHHHHH-hCchHHHHHHHHHcCCchhHHHHHhhCCcccccCC
Q 023665 204 PIFLTLLLLFI-SGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLPP 249 (279)
Q Consensus 204 ~i~~~~ll~~~-s~i~~~E~~l~~kyG~~~~Y~~Y~~~t~~~iP~~~ 249 (279)
+..+++.++ .+|+.||+.+.+-|| ++|.||+|+|+.=||+++
T Consensus 159 --f~~V~w~ff~~Ri~~EE~~Li~fFg--~~Y~eY~kkV~sGiPfi~ 201 (201)
T KOG2628|consen 159 --FLLVVWRFFADRIKEEEKYLISFFG--SSYVEYAKKVPSGIPFIK 201 (201)
T ss_pred --HHHHHHHHHhhhhhHHHHHHHHHhh--HHHHHHHHhCCcCCCCCC
Confidence 233344444 468888888999999 999999999998799864
No 9
>PF04140 ICMT: Isoprenylcysteine carboxyl methyltransferase (ICMT) family ; InterPro: IPR007269 The isoprenylcysteine o-methyltransferase (2.1.1.100 from EC) carries out carboyxl methylation of cleaved eukaryotic proteins that terminate in a CaaX motif. In Saccharomyces cerevisiae (Baker's yeast) this methylation is carried out by Ste14p, an integral endoplasmic reticulum membrane protein. Ste14p is the founding member of the isoprenylcysteine carboxyl methyltransferase (ICMT) family, whose members share significant sequence homology [].; GO: 0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity, 0006481 C-terminal protein methylation, 0016021 integral to membrane; PDB: 4A2N_B.
Probab=99.46 E-value=3.8e-13 Score=104.10 Aligned_cols=87 Identities=20% Similarity=0.250 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC---CCCCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHH-HH-HHHH
Q 023665 132 IMWSVGVSIEAIADQQKLSFKN---SPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLV-IL-GPIF 206 (279)
Q Consensus 132 ~l~~~G~~le~~Ad~ql~~f~~---~~~~~~~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~w~~-~~-~~i~ 206 (279)
+++++|..+..+|..+++++-+ ...++++++|+|+|+++|||||+|.++..+|......+ .|.. ++ .++.
T Consensus 3 ~~~i~g~~lr~~a~~~LG~~ft~~v~~~~~h~lVt~GpY~~vRHP~Y~g~~~~~~~~~~ll~~-----~~~~~~~~~~~~ 77 (94)
T PF04140_consen 3 GLFIAGQLLRYWAIRTLGRYFTHRVIIQPGHKLVTSGPYRYVRHPSYLGNIIWELGGQLLLFN-----AWLTALILFALV 77 (94)
T ss_dssp --HHHHHHHHHHHHHHHGGG--SS--EETT-----SSTTTTBSSHHHHH-HHHHHHHHHHHHT------HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHccccCcEEEEecCCCEEecccccccccCchHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHH
Confidence 4678899999999999965432 22456789999999999999999977666665554433 2322 22 2221
Q ss_pred HHHHHHHHhCchHHHHHHHH
Q 023665 207 LTLLLLFISGIPLLEESADK 226 (279)
Q Consensus 207 ~~~ll~~~s~i~~~E~~l~~ 226 (279)
. . .+..+++.||+.+.+
T Consensus 78 ~--~-~l~~RI~~EE~~L~~ 94 (94)
T PF04140_consen 78 A--W-LLFVRIREEERALIE 94 (94)
T ss_dssp H--H-HHHHHHHHHHHHHHH
T ss_pred H--H-HHHHHHHHHHHHhcC
Confidence 1 1 222457888877653
No 10
>KOG1638 consensus Steroid reductase [Lipid transport and metabolism]
Probab=99.44 E-value=7.6e-13 Score=116.53 Aligned_cols=110 Identities=25% Similarity=0.374 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHHH
Q 023665 125 AVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGP 204 (279)
Q Consensus 125 ~~~~~G~~l~~~G~~le~~Ad~ql~~f~~~~~~~~~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~w~~~~~~ 204 (279)
+...+|..+++.|.+++..+|..+.+.|++.+++-|+.+.|+|.|+-+|||+||++.|+|+++++.+ +-++...
T Consensus 147 ~r~liG~~lfv~Gm~iN~~sD~iL~~LRk~~~~~YkIP~GglFeyVsCPNYfgEiieW~Gyal~~ws------~p~~aFa 220 (257)
T KOG1638|consen 147 IRFLIGVVLFVTGMLINIYSDNILRTLRKPGGKGYKIPRGGLFEYVSCPNYFGEIIEWIGYALASWS------LPALAFA 220 (257)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCceecCCCceEEEeecchHHHHHHHHHHHHHHhhh------HHHHHHH
Confidence 4678999999999999999999999999887777799999999999999999999999999988643 2122222
Q ss_pred HHHHHHHHHHhCchHHHHHHHHHcCCchhHHHHHhhCCcccccC
Q 023665 205 IFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 248 (279)
Q Consensus 205 i~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y~~Y~~~t~~~iP~~ 248 (279)
++ ++ .+........+ +-|- +.++||.|..+.+||++
T Consensus 221 ~f-t~--~~l~pRA~ahH---~WY~--~kFe~YPk~RkAlIPfv 256 (257)
T KOG1638|consen 221 FF-TI--CNLGPRAYAHH---KWYL--KKFEDYPKNRKALIPFV 256 (257)
T ss_pred HH-HH--HHhhHHHHHHH---HHHH--HhhccCCccceeecccc
Confidence 22 22 22222222222 2342 55679999999999985
No 11
>PLN02392 probable steroid reductase DET2
Probab=99.38 E-value=2.9e-12 Score=115.73 Aligned_cols=110 Identities=24% Similarity=0.296 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHHH
Q 023665 125 AVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGP 204 (279)
Q Consensus 125 ~~~~~G~~l~~~G~~le~~Ad~ql~~f~~~~~~~~~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~w~~~~~~ 204 (279)
+..++|++++++|..++..+|.++.+.|++. ++.++.+.|+|+++.+|||+||++.|+|+++++.+ +..++..
T Consensus 150 ~~~~iG~~lF~~g~~~N~~sh~~L~~LRk~g-~~Y~iP~GGlF~~VscPnYf~EileW~gfal~t~s------~~~~~F~ 222 (260)
T PLN02392 150 WRFFGGLVVFLWGMRINVWSDRVLVGLKREG-GGYKVPRGGWFELVSCPNYFGEIVEWLGWAVMTWS------WAGFGFF 222 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CeeECCCCCCcCeEcCCcHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 4678999999999999999999999998764 56689999999999999999999999999998632 2111111
Q ss_pred HHHHHHHHHHhCchHHHHHHHHHcCCchhHHHHHhhCCcccccC
Q 023665 205 IFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 248 (279)
Q Consensus 205 i~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y~~Y~~~t~~~iP~~ 248 (279)
+.. +.-+ ........+..+|||| + ||.++.+++||++
T Consensus 223 ~~~-~~nl-~~rA~~~hkwY~~kFg--~---~ypk~RkaiIPfi 259 (260)
T PLN02392 223 LYT-CSNL-VPRACANHKWYLEKFG--E---DYPKGRKAVIPFL 259 (260)
T ss_pred HHH-HHHH-HHHHHHHHHHHHHHcc--c---cccCCCeEecCcc
Confidence 111 1111 1111222333556665 3 6778889999986
No 12
>PF02544 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase ; InterPro: IPR001104 Synonym(s): Steroid 5-alpha-reductase 3-oxo-5-alpha-steroid 4-dehydrogenases, 1.3.99.5 from EC catalyse the conversion of 3-oxo-5-alpha-steroid + acceptor to 3-oxo-delta(4)-steroid + reduced acceptor. The steroid 5-alpha-reductase enzyme is responsible for the formation of dihydrotestosterone, this hormone promotes the differentiation of male external genitalia and the prostate during foetal development []. In humans mutations in this enzyme can cause a form of male pseudohermaphorditism in which the external genitalia and prostate fail to develop normally. A related steroid reductase enzyme, DET2, is found in plants such as Arabidopsis. Mutations in this enzyme cause defects in light-regulated development []. This domain is present in both type 1 and type 2 forms.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006629 lipid metabolic process, 0005737 cytoplasm, 0016021 integral to membrane
Probab=99.29 E-value=2.8e-11 Score=101.37 Aligned_cols=111 Identities=19% Similarity=0.384 Sum_probs=80.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHH
Q 023665 124 QAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILG 203 (279)
Q Consensus 124 ~~~~~~G~~l~~~G~~le~~Ad~ql~~f~~~~~~~~~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~w~~~~~ 203 (279)
.+..++|++++++|...+..+|.++.+.|++.+++.++.+.|+|+++.+|||++|++.|+|+.+++.+ +.+...
T Consensus 39 ~~~~~~g~~lf~~g~~~n~~~h~~L~~lr~~~~~~y~iP~gg~F~~vscP~Y~~Eil~w~~f~l~~~~------~~~~~f 112 (150)
T PF02544_consen 39 SPRFIIGLALFLIGSIGNFYSHLILANLRKPGSKKYKIPKGGLFEYVSCPHYFFEILIWIGFALLTGS------WPSYAF 112 (150)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCceeCCCCCCcceeeehhhHHHHHHHHHHHHHHhh------hhhHHH
Confidence 35678999999999999999999999888776667789999999999999999999999999988642 111111
Q ss_pred HHHHHHHHHHHhCchHHHHHHHHHcCCchhHHHHHhhCCcccccC
Q 023665 204 PIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 248 (279)
Q Consensus 204 ~i~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y~~Y~~~t~~~iP~~ 248 (279)
.++. ....+ ....+++ +.| +++++||.++.+++||++
T Consensus 113 ~~~~---~~~l~-~~A~~~h--~wY--~~~F~~yp~~R~~lIPfi 149 (150)
T PF02544_consen 113 ALFV---VVNLS-PRAVQTH--RWY--KKKFKEYPKNRKALIPFI 149 (150)
T ss_pred HHHH---HHHHH-HHHHHHH--HHH--HHHCccccCCCeEecCcc
Confidence 1111 11111 1122222 334 256789999999999986
No 13
>PLN02560 enoyl-CoA reductase
Probab=99.15 E-value=3.3e-10 Score=105.30 Aligned_cols=115 Identities=14% Similarity=0.085 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHH
Q 023665 125 AVDVIGWIMWSVGVSIEAIADQQKLSFKNS-PENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILG 203 (279)
Q Consensus 125 ~~~~~G~~l~~~G~~le~~Ad~ql~~f~~~-~~~~~~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~w~~~~~ 203 (279)
...++|++++++|...+..+|.++.+.|++ .+.+.++...|+|+++-+|||++|++.|+|+++++.+ +.+++.
T Consensus 192 ~~~~~g~~lf~~~~~~N~~~h~~L~~LR~~~g~~~y~IP~g~lF~~VscPnY~~Ei~~W~gf~~~t~~------~~~~~F 265 (308)
T PLN02560 192 TQMKVGFGFGLVCQLANFYCHIILRNLRKPDGKGGYQIPRGFLFNYVTCANYTTEIYQWLGFNIATQT------VAGYLF 265 (308)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeeCCCCCCcCeecCCcHHHHHHHHHHHHHHHcc------HHHHHH
Confidence 355899999999999999999999999876 4455679999999999999999999999999998743 111111
Q ss_pred HHHHHHHHHHHhCchHHHHHHHHHcCCchhHHHHHhhCCccccc
Q 023665 204 PIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPL 247 (279)
Q Consensus 204 ~i~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y~~Y~~~t~~~iP~ 247 (279)
.++. ...+ .......++...++|+|.++..+|.++...++|+
T Consensus 266 ~~~~-~~~m-~~wA~~kh~~Y~k~F~d~~~~~~yp~~~~~~pp~ 307 (308)
T PLN02560 266 LAVA-AAIM-TNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPF 307 (308)
T ss_pred HHHH-HHHH-HHHHHHHHHHHHHhccCccccccCCCceEeCCCc
Confidence 1111 1111 1112344555677786323345688766666665
No 14
>PLN03164 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional
Probab=99.07 E-value=1.2e-09 Score=100.97 Aligned_cols=113 Identities=14% Similarity=0.214 Sum_probs=77.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHH
Q 023665 124 QAVDVIGWIMWSVGVSIEAIADQQKLSFKNSP--ENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVI 201 (279)
Q Consensus 124 ~~~~~~G~~l~~~G~~le~~Ad~ql~~f~~~~--~~~~~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~w~~~ 201 (279)
++.+++|++++++|...+..+|..+.+.|+++ +++.++.+.|+|+++-.|||++|+++|+|+++++.+. ...++.+
T Consensus 208 ~~~q~iGl~lFlig~~~n~~~H~iLa~LR~~k~~~~~Y~IP~GglF~~VSCPHYf~EIliw~gfal~t~~~--~~~~~l~ 285 (323)
T PLN03164 208 GWFQWIGAAIFLWGWIHQYRCHAILGSLREHKKQADEYVIPYGDWFEMVSCPHYLAEIVIYAGLLIASGGT--DLTIWLL 285 (323)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCCceEECCCCCCcCeEcCCcHHHHHHHHHHHHHHHcCc--hHHHHHH
Confidence 34568999999999999999999999998532 3356799999999999999999999999999886421 1111111
Q ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHcCCchhHHHHHhhCCcccccC
Q 023665 202 LGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 248 (279)
Q Consensus 202 ~~~i~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y~~Y~~~t~~~iP~~ 248 (279)
+ +++.. ... ....|++ +.|- ++++||.++.+++||++
T Consensus 286 ~--~~v~~---nL~-~~A~~tH--kWY~--kkF~dYPk~RkAIIPfI 322 (323)
T PLN03164 286 F--GFVVA---NLT-FAAAETH--RWYL--QKFENYPRNRYAIIPFV 322 (323)
T ss_pred H--HHHHH---HHH-HHHHHHH--HHHH--HhccccccCceEecCcc
Confidence 1 11111 111 1222222 3342 45567999999999985
No 15
>COG1755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.97 E-value=4.2e-09 Score=88.03 Aligned_cols=97 Identities=20% Similarity=0.291 Sum_probs=71.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---CCCCcccccCccccccCcchHH-HHHHHHHHHHHhcCccCchh
Q 023665 122 SVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSP---ENRGKWCNVGFWKYSRHPNYFG-EIFLWWGIFVASTPVLDGAE 197 (279)
Q Consensus 122 ~~~~~~~~G~~l~~~G~~le~~Ad~ql~~f~~~~---~~~~~lvt~Gly~~sRHPnY~G-e~l~w~G~~l~~~~~~~g~~ 197 (279)
..++..++|++++++...+..++..+++++-+.+ -++++++++|+||+.|||||+- .+..-+|+.+.+- .
T Consensus 66 ~f~~~~~~gl~~~l~s~~ll~~vi~~LG~iWttki~ilP~h~~v~sglfk~~kHPNYflnIipEligl~Ll~~------A 139 (172)
T COG1755 66 FFNWLSIIGLALLLFSQILLYWVIKSLGEIWTTKIMILPNHQIVRSGLFKTMKHPNYFLNIIPELIGLPLLCQ------A 139 (172)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHhhhheeeEEEeCCceeeccccchhccCCcHHHHHHHHHHHHHHHHH------H
Confidence 4566778899999999999999999998876543 3577899999999999999999 6666788888752 3
Q ss_pred HHH--HHHHHHHHHHHHHHhCchHHHHHHHHH
Q 023665 198 WLV--ILGPIFLTLLLLFISGIPLLEESADKK 227 (279)
Q Consensus 198 w~~--~~~~i~~~~ll~~~s~i~~~E~~l~~k 227 (279)
|.+ +.+|+. .+++++ +++-||+.+.+-
T Consensus 140 ~~Ta~l~~p~y--a~~L~v-RIr~EekaL~~~ 168 (172)
T COG1755 140 WYTALLFSPIY--ALLLYV-RIRQEEKALAEL 168 (172)
T ss_pred HHHHHHHHHHH--HHHHhh-hhhHHHHHHHHh
Confidence 443 345543 333333 467777666543
No 16
>KOG1640 consensus Predicted steroid reductase [Lipid transport and metabolism]
Probab=97.94 E-value=0.00064 Score=62.02 Aligned_cols=109 Identities=17% Similarity=0.399 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--CCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHH
Q 023665 126 VDVIGWIMWSVGVSIEAIADQQKLSFKNSPE--NRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILG 203 (279)
Q Consensus 126 ~~~~G~~l~~~G~~le~~Ad~ql~~f~~~~~--~~~~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~w~~~~~ 203 (279)
.+++|.+++..|-.=+..++.++.+-|++|. .+..+++.|.++++..|||++|+++..|++...... ..| .+++
T Consensus 193 ~q~~g~~iF~i~s~~Qy~~h~iL~nlrk~~~~~~~~~ip~g~~F~~Vs~Ph~L~Ei~iY~~ia~~~~~~---~iw-Lv~~ 268 (304)
T KOG1640|consen 193 LQWLGLGIFAIGSIHQYASHEILGNLRKYPRQAKAYLIPKGGWFKLVSCPHYLAEIIIYVGIALGAPDL---TIW-LVFG 268 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhheecCCCCEeeecCChHHHHHHHHHHHHHhcCCch---HHH-HHHH
Confidence 6789999999998888888888888777654 345689999999999999999999999966543221 123 2222
Q ss_pred HHHHHHHHHHHhCchHHHHHHHHHcCCchhHHHHHhhCCcccccC
Q 023665 204 PIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 248 (279)
Q Consensus 204 ~i~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y~~Y~~~t~~~iP~~ 248 (279)
-+ ....+ +...|.+ +-| .+.+++|.+....+||++
T Consensus 269 ~V-----~~N~t-~aA~~Th--~wY--~~kF~~yp~~R~AiiPfl 303 (304)
T KOG1640|consen 269 WV-----AANLT-YAALETH--RWY--LKKFENYPKNRHAIIPFL 303 (304)
T ss_pred HH-----HHHHH-HHHHHHH--HHH--HHhhccCccccccccccc
Confidence 11 11111 1233322 223 256789999999999985
No 17
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=97.54 E-value=0.0003 Score=62.94 Aligned_cols=108 Identities=14% Similarity=0.169 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcc-cccC-ccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHHH
Q 023665 127 DVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKW-CNVG-FWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGP 204 (279)
Q Consensus 127 ~~~G~~l~~~G~~le~~Ad~ql~~f~~~~~~~~~l-vt~G-ly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~w~~~~~~ 204 (279)
..+|++.++++.+.+..++.-+++.|....++.++ ...| ++.++.+|||+-|+..|+|+.+++-+ + .+.
T Consensus 188 ~~~~l~~fv~~el~NF~~HI~LR~lrp~g~k~r~ip~~~g~lFnlvscpNYt~Ev~sWi~F~i~tq~------l---~a~ 258 (297)
T KOG1639|consen 188 VKLGLGGFVLCELGNFSCHILLRNLRPAGSKKRRIPLPDGFLFNLVSCPNYTYEVGSWIGFAIMTQC------L---AAY 258 (297)
T ss_pred hhhhhHHHhhhhhcceeeEeehhhccCCcCccceeecCCccEEEEEecCCcceehHHHHHHHHHHHH------H---HHH
Confidence 34566666665555555555555555433333333 3345 89999999999999999999988632 1 111
Q ss_pred HHHHHHHHHHhCchHHHHHHHHHcCCchhHHHHHhhCCcccccC
Q 023665 205 IFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 248 (279)
Q Consensus 205 i~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y~~Y~~~t~~~iP~~ 248 (279)
++.++-..-.. +...- -.++|- +|+.+|.++...+||+.
T Consensus 259 lFl~vg~aqMt-iWA~~--Kh~~yl--KeFp~Ypr~r~~iiPFv 297 (297)
T KOG1639|consen 259 LFLTVGAAQMT-IWAKG--KHRRYL--KEFPDYPRRRKIIIPFV 297 (297)
T ss_pred HHHHHHHHHHH-HHHHh--hhHhHh--hhcccCCccccccCCCC
Confidence 12111100000 11111 124453 78889999999999974
No 18
>PF07298 NnrU: NnrU protein; InterPro: IPR009915 This family consists of several plant and bacterial NnrU proteins. NnrU is thought to be involved in the reduction of nitric oxide. The exact function of NnrU is unclear. It is thought however that NnrU and perhaps NnrT are required for expression of both nirK and nor [].
Probab=97.07 E-value=0.0018 Score=56.36 Aligned_cols=95 Identities=21% Similarity=0.372 Sum_probs=55.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHH
Q 023665 124 QAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILG 203 (279)
Q Consensus 124 ~~~~~~G~~l~~~G~~le~~Ad~ql~~f~~~~~~~~~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~w~~~~~ 203 (279)
.+...+...++.+++++-..+..+ .++-+ +++++|||++.|..+ |..-=+...+ +..+. .+.+
T Consensus 67 ~~~~~l~~~lm~~a~il~~~a~~~-----~~~~~--------i~r~~RHP~l~g~~l-WA~aHLl~nG--d~~~~-lLFg 129 (191)
T PF07298_consen 67 PWLRHLANLLMLLAFILLVAALFP-----PNPFS--------IYRITRHPMLLGVLL-WALAHLLANG--DLASL-LLFG 129 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcc-----CcchH--------HHHHhcCchHHHHHH-HHHHHhhhcC--cHHHH-HHHH
Confidence 344556667777777665555432 11111 999999999999654 5432232211 11122 2233
Q ss_pred HHHHHHHHHHHhCchHHHHHHHHHcCCchhHHHHHhhCCc
Q 023665 204 PIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSP 243 (279)
Q Consensus 204 ~i~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y~~Y~~~t~~ 243 (279)
..... .+.++..+|++ ++ +| ++|++|+++|+.
T Consensus 130 ~~~~~----al~~~~~~~rr-~~-~g--~~~~~~~~~~s~ 161 (191)
T PF07298_consen 130 GFLAW----ALIGIILIDRR-RR-FG--DAWRAYPRRTSI 161 (191)
T ss_pred HHHHH----HHHHHHHHHHh-hc-cc--cccccccCCCCC
Confidence 32222 22346788888 66 88 889999999873
No 19
>PLN02797 phosphatidyl-N-dimethylethanolamine N-methyltransferase
Probab=90.57 E-value=0.7 Score=38.74 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC---C--CCCCCcccccCccccccCcchHHHHHHHHHHHHHh
Q 023665 127 DVIGWIMWSVGVSIEAIADQQKLSFKN---S--PENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVAS 189 (279)
Q Consensus 127 ~~~G~~l~~~G~~le~~Ad~ql~~f~~---~--~~~~~~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~ 189 (279)
.+.|.+++.+|-++...+..++..-.+ + .... .-+|+=++++.+||+|-|..+..+|.++..
T Consensus 66 pl~~~~L~aiGq~Lv~ss~~~LG~tGTYlGdyFGilm-~~VT~FPFnv~~nPmY~GStl~fLg~al~~ 132 (164)
T PLN02797 66 PLYFWPLFAFGQFLNFRVYQLLGEAGTYYGVRFGKNI-PWVTEFPFGVIRDPQYVGSILSLLACLSWV 132 (164)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhCCceeeehhhhcccc-cccccCCCCCCCCcchhhHHHHHHHHHHHh
Confidence 367899999999999999888853222 1 0112 278888999999999999999999988764
No 20
>COG4094 Predicted membrane protein [Function unknown]
Probab=86.11 E-value=0.6 Score=40.83 Aligned_cols=76 Identities=26% Similarity=0.401 Sum_probs=43.6
Q ss_pred ccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHHHHHHHHHHHHHhCchHHHHHHHHHcCCchhHHHHHhh
Q 023665 161 WCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKT 240 (279)
Q Consensus 161 lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~w~~~~~~i~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y~~Y~~~ 240 (279)
+--+++=+.+|||.-.|..+--+|=-+.. + ...+.+. .+. + ++..+.++...|++.++||| |+++.=+++
T Consensus 98 ~~~g~Ii~itRHP~l~g~~iWalaHll~n-G--d~~Svll-fgg-f---~l~~~~~~~~~~rR~r~r~g--~a~~~~~~~ 167 (219)
T COG4094 98 LYEGRIIRITRHPQLLGVVIWALAHLLAN-G--DTFSVLL-FGG-F---LLWAVVGVWSGDRRARKRYG--EAFVAPVQV 167 (219)
T ss_pred ccCCceEEEecCchhHHHHHHHHHHhhcc-C--ceeeHHH-HHH-H---HHHHHHHhhhhhhhhhcccC--cceeeeecc
Confidence 34456778999999999754222222221 1 1111211 111 1 22223457888999999999 888776666
Q ss_pred CCccccc
Q 023665 241 TSPLIPL 247 (279)
Q Consensus 241 t~~~iP~ 247 (279)
|++ +|+
T Consensus 168 ts~-~pf 173 (219)
T COG4094 168 TSR-IPF 173 (219)
T ss_pred ccc-cch
Confidence 654 454
No 21
>KOG4142 consensus Phospholipid methyltransferase [Lipid transport and metabolism]
Probab=71.81 E-value=27 Score=29.85 Aligned_cols=64 Identities=11% Similarity=0.125 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---cCCCC--CCCCcccccCccccccCcchHHHHHHHHHHHHHh
Q 023665 126 VDVIGWIMWSVGVSIEAIADQQKLS---FKNSP--ENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVAS 189 (279)
Q Consensus 126 ~~~~G~~l~~~G~~le~~Ad~ql~~---f~~~~--~~~~~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~ 189 (279)
..-+|.+++.+|.++...+...+.- |..+- --+.+=+|.=++...-||+|-|..+...|+++.-
T Consensus 97 ~~~lg~alfglG~VLVLSSmykLG~~GTyLGDYFGiL~~eRVtgFPFNv~dNPMY~GSTl~fLg~Al~~ 165 (208)
T KOG4142|consen 97 AYSLGLALFGLGVVLVLSSMYKLGFAGTYLGDYFGILKEERVTGFPFNVLDNPMYWGSTLNFLGWALMH 165 (208)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhccchhhhhhhhhhhhhhhcccccccccCCcccccchHHHHHHHHHc
Confidence 4557888888888877766665531 21110 0122346777999999999999999999999874
No 22
>COG3162 Predicted membrane protein [Function unknown]
Probab=42.16 E-value=1.7e+02 Score=22.94 Aligned_cols=63 Identities=16% Similarity=0.104 Sum_probs=33.6
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCCC-CCcHHHHHHHHHHHHHHHHHHH
Q 023665 80 DRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNAS-----DRDP-SVQAVDVIGWIMWSVGVSIEAI 143 (279)
Q Consensus 80 D~Ry~~~r~~~~~~~~~~~~Q~~~~~l~~lP~~~~~~~-----~~~~-~~~~~~~~G~~l~~~G~~le~~ 143 (279)
.+||.+++++..+|.+. +.-..+++.++.|++++... +..+ +.++-..+|...++.++++..+
T Consensus 12 ~p~f~eLv~kr~~Fa~~-ltl~flv~Y~~filLiaf~~~~l~tp~~~~~Vt~Gip~gvg~fv~tfVlt~I 80 (102)
T COG3162 12 NPRFRELVRKRRRFAVP-LTLIFLVVYFGFILLIAFAPGWLATPLFGASVTRGIPFGVGVFVMTFVLTGI 80 (102)
T ss_pred CHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHhcCcccCCceehhHhHHHHHHHHHHHHHHH
Confidence 47899998876654221 12233444555555544321 1111 2455556677777777766544
No 23
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein. This model represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase.
Probab=40.03 E-value=22 Score=28.25 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=16.8
Q ss_pred HHHHcCCchhHHHHHhhCCccccc
Q 023665 224 ADKKFGNMPAYRLYKKTTSPLIPL 247 (279)
Q Consensus 224 l~~kyG~~~~Y~~Y~~~t~~~iP~ 247 (279)
+.++| +.|++||+++.+=||-
T Consensus 89 ~~~~~---p~~~~yq~~t~R~ipv 109 (113)
T TIGR00026 89 VVRLY---PRYGRYQSRTDRPIPV 109 (113)
T ss_pred HHHHC---cCHHHHHhhCCCcccE
Confidence 34566 7899999999988874
No 24
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=33.00 E-value=1.3e+02 Score=28.09 Aligned_cols=25 Identities=8% Similarity=0.040 Sum_probs=19.2
Q ss_pred ccccCccccccCcchHHHHHHHHHHHH
Q 023665 161 WCNVGFWKYSRHPNYFGEIFLWWGIFV 187 (279)
Q Consensus 161 lvt~Gly~~sRHPnY~Ge~l~w~G~~l 187 (279)
+-|.|++++++|| +||+...+.+..
T Consensus 134 ~YT~gP~~l~y~g--LGE~~v~l~~G~ 158 (304)
T PRK07419 134 LYQGPPFRLGYQG--LGEPLCFLAFGP 158 (304)
T ss_pred eccCCCcccCCCC--chHHHHHHHHHH
Confidence 4466899999999 599987776543
No 25
>cd03737 SOCS_SOCS3 SOCS (suppressors of cytokine signaling) box of SOCS3-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS3, like CIS1 and SOCS1, is involved in the down-regulation of the JAK/STAT pathway. SOCS3 inhibits JAK activity indirectly through recruitment to the cytokine receptors. SOCS3 has been shown to play an essential role in placental development and a non-essential role in embryo development. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=28.60 E-value=40 Score=22.06 Aligned_cols=16 Identities=25% Similarity=0.245 Sum_probs=13.0
Q ss_pred CCCcHHHHHHhhhccc
Q 023665 253 GNLPWWLKTILFELPL 268 (279)
Q Consensus 253 ~~~p~~~k~~~~~~~~ 268 (279)
..+|.++|+|+.++|.
T Consensus 25 ~~LP~~Lk~yL~~Y~~ 40 (42)
T cd03737 25 TQLPLPIKEFLDQYDA 40 (42)
T ss_pred hhccHHHHHHHHhCCC
Confidence 3688899999988874
No 26
>cd03735 SOCS_SOCS1 SOCS (suppressors of cytokine signaling) box of SOCS1-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS1, like CIS1 and SOCS3, is involved in the down-regulation of the JAK/STAT pathway. SOCS1 has a dual function as a direct potent JAK kinase inhibitor and as a component of an E3 ubiquitin-ligase complex recruiting substrates to the protein degradation machinery.
Probab=27.78 E-value=45 Score=21.95 Aligned_cols=15 Identities=33% Similarity=0.304 Sum_probs=13.5
Q ss_pred CCcHHHHHHhhhccc
Q 023665 254 NLPWWLKTILFELPL 268 (279)
Q Consensus 254 ~~p~~~k~~~~~~~~ 268 (279)
.+|..+|+++-|||.
T Consensus 27 pLP~~LKdyL~~y~~ 41 (43)
T cd03735 27 PLNPVLKDYLKSFPF 41 (43)
T ss_pred cCCHHHHHHHHhCCC
Confidence 688999999999985
No 27
>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterised as a deazaflavin-dependent nitroreductase [, ]. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3R5Y_D 3R5W_A 3R5R_E 3R5L_A 3R5P_A 3R5Z_B 3H96_A.
Probab=27.39 E-value=54 Score=26.67 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=16.3
Q ss_pred HHHHcCCchhHHHHHhhCCccccc
Q 023665 224 ADKKFGNMPAYRLYKKTTSPLIPL 247 (279)
Q Consensus 224 l~~kyG~~~~Y~~Y~~~t~~~iP~ 247 (279)
+.++| +.|++|+++|.+=||-
T Consensus 107 ~~~~~---p~~~~y~~~t~R~ipv 127 (132)
T PF04075_consen 107 LVAAY---PGYADYQARTGRRIPV 127 (132)
T ss_dssp HHHHS---THHHHHHHHCSSTS-E
T ss_pred HHHHC---cChHHhcccCCCEeeE
Confidence 34667 8899999999988873
No 28
>PF15113 TMEM117: TMEM117 protein family
Probab=26.96 E-value=1.1e+02 Score=29.48 Aligned_cols=52 Identities=29% Similarity=0.491 Sum_probs=36.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcCcchhhHHHHhhhhHHHHHHH
Q 023665 46 GSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWI 98 (279)
Q Consensus 46 ~~~~~r~~l~~~~v~~W~~RL~~~l~~R~~~~geD~Ry~~~r~~~~~~~~~~~ 98 (279)
+++..-+.++-++.+++|++.|.|++.|.+- |.+-|-+.+|++.|.+...|+
T Consensus 61 ~gw~~LKv~lwllai~~GL~~GKfl~H~~Lf-g~~~rlkmf~ed~Gswm~mF~ 112 (415)
T PF15113_consen 61 GGWRALKVLLWLLAIFTGLIAGKFLFHQRLF-GQLLRLKMFREDHGSWMTMFL 112 (415)
T ss_pred CchHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHhhhhhcccCCceehHHH
Confidence 4455556677778899999999999987542 556677788887776443333
No 29
>COG3462 Predicted membrane protein [Function unknown]
Probab=25.72 E-value=2.2e+02 Score=22.70 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=8.2
Q ss_pred hHHHHHHHHHcC
Q 023665 218 PLLEESADKKFG 229 (279)
Q Consensus 218 ~~~E~~l~~kyG 229 (279)
...|+.++|||-
T Consensus 88 sRA~eIlkER~A 99 (117)
T COG3462 88 SRAEEILKERYA 99 (117)
T ss_pred cHHHHHHHHHHh
Confidence 456667888883
No 30
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=23.17 E-value=1.7e+02 Score=27.92 Aligned_cols=66 Identities=23% Similarity=0.363 Sum_probs=35.2
Q ss_pred cccCcchHHHHHHHHHHHHHhcCccCchhHHHHHHHHHHHHHHHHHhCchHHHHHHHHHcCCchhHHHHHhhC-Cccccc
Q 023665 169 YSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTT-SPLIPL 247 (279)
Q Consensus 169 ~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~w~~~~~~i~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y~~Y~~~t-~~~iP~ 247 (279)
+.|++.|+|-.+--.+++....-..++ .|...+..++...+..+. + . +-|++|++++ ..+-|.
T Consensus 275 flR~~ey~gl~lRL~~i~~l~i~~~~~-~wl~~iv~~l~~yl~~~Q----L-------~----~l~~~~~~~~~~~lyP~ 338 (386)
T PF05975_consen 275 FLRSGEYLGLYLRLTLIGALLIFFLPG-SWLSLIVGLLFLYLTGFQ----L-------L----PLWRHFDYSPWTHLYPI 338 (386)
T ss_pred HHhCccHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHH----H-------H----HHHHHHHhCcchhhCCC
Confidence 579999999988777666544322222 354333222211111111 1 1 5677777776 366676
Q ss_pred CCC
Q 023665 248 PPV 250 (279)
Q Consensus 248 ~~~ 250 (279)
.++
T Consensus 339 ~~~ 341 (386)
T PF05975_consen 339 SEK 341 (386)
T ss_pred Chh
Confidence 554
No 31
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=22.74 E-value=2.4e+02 Score=26.29 Aligned_cols=21 Identities=38% Similarity=0.431 Sum_probs=16.2
Q ss_pred ccccCccccccCcchHHHHHHHH
Q 023665 161 WCNVGFWKYSRHPNYFGEIFLWW 183 (279)
Q Consensus 161 lvt~Gly~~sRHPnY~Ge~l~w~ 183 (279)
+-|.|++.++|+| +||+..-+
T Consensus 129 ~Yt~gP~~l~y~g--LGe~~v~i 149 (317)
T PRK13387 129 LYTGGPLPLSRMP--LGEIFSGL 149 (317)
T ss_pred hhcCCCcccccCc--cHHHHHHH
Confidence 3455899999999 89997443
No 32
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.56 E-value=5.6e+02 Score=23.98 Aligned_cols=25 Identities=20% Similarity=0.494 Sum_probs=15.8
Q ss_pred hHHHHhh----hhHHHHHHHHHHHHHHHH
Q 023665 83 FDEMRSN----LGKLAIFWIFQAVWVWTV 107 (279)
Q Consensus 83 y~~~r~~----~~~~~~~~~~Q~~~~~l~ 107 (279)
|..+|.+ ++.|++++++|.+...+-
T Consensus 188 YkAFRsDSSf~F~~FFF~y~~q~~~~v~q 216 (313)
T KOG3088|consen 188 YKAFRTDSSFNFGAFFFTYFFQIVFCVFQ 216 (313)
T ss_pred HHHhccccchhhHHHHHHHHHHHHHHHHH
Confidence 8888874 344555667777665443
No 33
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=21.02 E-value=2.9e+02 Score=25.40 Aligned_cols=22 Identities=23% Similarity=0.141 Sum_probs=16.8
Q ss_pred ccCccccccCcchHHHHHHHHHHH
Q 023665 163 NVGFWKYSRHPNYFGEIFLWWGIF 186 (279)
Q Consensus 163 t~Gly~~sRHPnY~Ge~l~w~G~~ 186 (279)
|.|++++++|| +||++..+.+.
T Consensus 126 t~gP~~l~y~g--LGE~~v~i~~G 147 (284)
T TIGR00751 126 TVGSKPYGYAG--LGDISVLVFFG 147 (284)
T ss_pred cCCCCccccCc--hHHHHHHHHHH
Confidence 44778888888 69988877664
No 34
>cd03734 SOCS_CIS1 SOCS (suppressors of cytokine signaling) box of CIS (cytokine-inducible SH2 protein) 1-like proteins. Together with the SOCS proteins, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. CIS1, like SOCS1 and SOCS3, is involved in the down-regulation of the JAK/STAT pathway. CIS1 binds to cytokine receptors at STAT5-docking sites, which prohibits recruitment of STAT5 to the receptor signaling complex and results in the down-regulation of activation by STAT5.
Probab=20.78 E-value=75 Score=20.63 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=13.4
Q ss_pred CCcHHHHHHhhhccc
Q 023665 254 NLPWWLKTILFELPL 268 (279)
Q Consensus 254 ~~p~~~k~~~~~~~~ 268 (279)
.+|..+|+++.+||.
T Consensus 25 pLP~~L~~yL~~y~~ 39 (41)
T cd03734 25 PLPRRMADYLRQYPF 39 (41)
T ss_pred CCCHHHHHHHHHCCC
Confidence 688999999999985
Done!