Query 023665
Match_columns 279
No_of_seqs 297 out of 1565
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 10:43:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023665.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023665hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a2n_B Isoprenylcysteine carbo 99.9 1.9E-25 6.5E-30 193.3 19.6 116 123-248 74-193 (194)
2 3r5y_A Putative uncharacterize 68.2 2.8 9.5E-05 33.8 2.5 22 224-248 121-142 (147)
3 3r5z_A Putative uncharacterize 62.0 4.4 0.00015 32.6 2.5 22 224-248 119-140 (145)
4 3h96_A F420-H2 dependent reduc 61.5 4.5 0.00015 32.4 2.6 22 224-248 115-138 (143)
5 3r5l_A Deazaflavin-dependent n 59.1 1.5 5E-05 34.4 -0.8 21 224-247 97-117 (122)
6 2jz3_A Suppressor of cytokine 24.8 36 0.0012 21.0 1.7 15 254-268 24-38 (40)
7 2jp3_A FXYD domain-containing 12.4 2.3E+02 0.0078 19.5 3.6 35 130-165 25-63 (67)
8 3ctd_A Putative ATPase, AAA fa 9.2 1.3E+02 0.0046 25.4 1.8 19 69-87 56-74 (213)
9 3bge_A Predicted ATPase; struc 8.7 1.5E+02 0.005 24.9 1.8 19 69-87 28-46 (201)
10 2i68_A Protein EMRE; transmemb 8.3 4.6E+02 0.016 20.1 4.6 25 31-55 65-90 (137)
No 1
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=99.94 E-value=1.9e-25 Score=193.26 Aligned_cols=116 Identities=19% Similarity=0.301 Sum_probs=93.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC--CCCCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHH
Q 023665 123 VQAVDVIGWIMWSVGVSIEAIADQQKLS-FKN--SPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWL 199 (279)
Q Consensus 123 ~~~~~~~G~~l~~~G~~le~~Ad~ql~~-f~~--~~~~~~~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~w~ 199 (279)
..+..++|++++++|+.++.+|+.|+.+ |+. +++++++++|+|+|++||||||+|+++.|+|+++...+ ++
T Consensus 74 p~~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~s------~~ 147 (194)
T 4a2n_B 74 PDSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSN------WV 147 (194)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCEETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHTC------HH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCeeeecCcchhccCccHHHHHHHHHHHHHHhcc------HH
Confidence 3567889999999999999999999865 453 34577899999999999999999999999999987532 33
Q ss_pred HHH-HHHHHHHHHHHHhCchHHHHHHHHHcCCchhHHHHHhhCCcccccC
Q 023665 200 VIL-GPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 248 (279)
Q Consensus 200 ~~~-~~i~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y~~Y~~~t~~~iP~~ 248 (279)
+++ .+++++++ +..+++.||+.+.++|| ++|++|+++||++||++
T Consensus 148 ~~~~~~~~~~~~--~~~ri~~EE~~L~~~fG--~~Y~~Y~~rv~r~iP~i 193 (194)
T 4a2n_B 148 VLIFGIVAWAIL--YFIRVPKEEELLIEEFG--DEYIEYMGKTGRLFPKV 193 (194)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHT--HHHHHHHHHCBSSSCC-
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHhC--HHHHHHHHhCCeeCcee
Confidence 333 33332222 23568999999999999 99999999999999985
No 2
>3r5y_A Putative uncharacterized protein; PA-824, nitroimidazoles, split barrel-like fold, DUF385, DEA dependent nitroreductase, unknown function; HET: F42; 1.80A {Nocardia farcinica}
Probab=68.22 E-value=2.8 Score=33.84 Aligned_cols=22 Identities=36% Similarity=0.733 Sum_probs=18.0
Q ss_pred HHHHcCCchhHHHHHhhCCcccccC
Q 023665 224 ADKKFGNMPAYRLYKKTTSPLIPLP 248 (279)
Q Consensus 224 l~~kyG~~~~Y~~Y~~~t~~~iP~~ 248 (279)
+.++| |.|.+||++|.|-||-+
T Consensus 121 ~~~~~---P~y~~Yq~~t~R~IPv~ 142 (147)
T 3r5y_A 121 AVRAY---PTYQEYQDNTRRLIPVL 142 (147)
T ss_dssp HHHHC---THHHHHHHTCSSCCCEE
T ss_pred HHHHC---CCHHHHHhhcCCcCcEE
Confidence 44667 89999999999988853
No 3
>3r5z_A Putative uncharacterized protein; split barrel-like fold, DUF385, deazaflavin-dependent reduct F420-dependent reductase, FDR; HET: F42; 1.50A {Nocardia farcinica}
Probab=61.99 E-value=4.4 Score=32.60 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=17.8
Q ss_pred HHHHcCCchhHHHHHhhCCcccccC
Q 023665 224 ADKKFGNMPAYRLYKKTTSPLIPLP 248 (279)
Q Consensus 224 l~~kyG~~~~Y~~Y~~~t~~~iP~~ 248 (279)
+.++| |.|++||++|.|-||-+
T Consensus 119 ~~~~~---p~y~~Yq~~t~R~iPv~ 140 (145)
T 3r5z_A 119 AVEVW---PDYAEYQTKTTREIPVF 140 (145)
T ss_dssp HHHHC---THHHHHGGGCSSCCCEE
T ss_pred HHHHC---cCHHHHHHhcCCcCceE
Confidence 44567 89999999999988843
No 4
>3h96_A F420-H2 dependent reductase A; pnpox, flavin, aflatoxin, flavoprotein; 2.00A {Mycobacterium smegmatis str}
Probab=61.48 E-value=4.5 Score=32.41 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=17.8
Q ss_pred HHHHcCCchhHHHHHhhCC--cccccC
Q 023665 224 ADKKFGNMPAYRLYKKTTS--PLIPLP 248 (279)
Q Consensus 224 l~~kyG~~~~Y~~Y~~~t~--~~iP~~ 248 (279)
+.++| |.|++||++|. |-||-+
T Consensus 115 ~~~~~---P~y~~Yq~~t~~~R~iPv~ 138 (143)
T 3h96_A 115 QARRY---PGFADYEKKTAGIRTIPVL 138 (143)
T ss_dssp HHHHC---THHHHHHHHTTTTCCCCEE
T ss_pred HHHHC---cCHHHHHHhcCCCCcccEE
Confidence 44667 88999999998 988843
No 5
>3r5l_A Deazaflavin-dependent nitroreductase; PA-824, split barrel-like fold, DUF385, deazaflavin-dependen nitroreductase, nitroimidazoles; HET: MES; 1.55A {Mycobacterium tuberculosis} PDB: 3r5p_A 3r5w_A* 3r5r_A*
Probab=59.13 E-value=1.5 Score=34.35 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=17.8
Q ss_pred HHHHcCCchhHHHHHhhCCccccc
Q 023665 224 ADKKFGNMPAYRLYKKTTSPLIPL 247 (279)
Q Consensus 224 l~~kyG~~~~Y~~Y~~~t~~~iP~ 247 (279)
+.++| |.|++||++|.|-||-
T Consensus 97 ~~~~~---p~y~~yq~~t~R~ipv 117 (122)
T 3r5l_A 97 LVTMY---PSYQDYQSWTDRTIPI 117 (122)
T ss_dssp HHHHC---TTCCCTTGGGCTTSCE
T ss_pred HHHHC---cCHHHHHhhcCCcccE
Confidence 45678 7899999999998884
No 6
>2jz3_A Suppressor of cytokine signaling 3; SOCS proteins, elongins, cytokine signaling, growth regulati phosphoprotein, SH2 domain; NMR {Mus musculus}
Probab=24.79 E-value=36 Score=20.97 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=13.2
Q ss_pred CCcHHHHHHhhhccc
Q 023665 254 NLPWWLKTILFELPL 268 (279)
Q Consensus 254 ~~p~~~k~~~~~~~~ 268 (279)
.+|..+|+++.|+|.
T Consensus 24 pLP~~Lk~yL~ey~y 38 (40)
T 2jz3_A 24 QLPGPIREFLDQYDA 38 (40)
T ss_pred CCCHHHHHHHHHCCC
Confidence 689999999999885
No 7
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=12.43 E-value=2.3e+02 Score=19.50 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC----CCCCcccccC
Q 023665 130 GWIMWSVGVSIEAIADQQKLSFKNSP----ENRGKWCNVG 165 (279)
Q Consensus 130 G~~l~~~G~~le~~Ad~ql~~f~~~~----~~~~~lvt~G 165 (279)
+.+++++|+++-. +.+-+-+|++++ ++...++|.|
T Consensus 25 A~vLfi~GI~iil-S~kcrCk~~qk~~~~~~~a~~litpg 63 (67)
T 2jp3_A 25 GGLLCIAGIALAL-SGKCKCRRNHTPSSLPEKVTPLITPG 63 (67)
T ss_dssp HHHHHHHHHHHHH-TTHHHHHHTCCTTTSTTTSHHHHSCC
T ss_pred HHHHHHHHHHHHH-cCcccccCCCCCCCCCccCCceecCC
Confidence 3455666665433 233334454332 2222366665
No 8
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=9.22 E-value=1.3e+02 Score=25.42 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=13.3
Q ss_pred HHHHhhcCcCcchhhHHHH
Q 023665 69 FLLMRILNWGEDRRFDEMR 87 (279)
Q Consensus 69 ~l~~R~~~~geD~Ry~~~r 87 (279)
|++.|.+..|||.+|-.-|
T Consensus 56 ywLaRMl~~GEDp~~IaRR 74 (213)
T 3ctd_A 56 YWLANMVEAGEDPNFIFRR 74 (213)
T ss_dssp HHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHH
Confidence 3445556789999997655
No 9
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=8.65 E-value=1.5e+02 Score=24.95 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=13.3
Q ss_pred HHHHhhcCcCcchhhHHHH
Q 023665 69 FLLMRILNWGEDRRFDEMR 87 (279)
Q Consensus 69 ~l~~R~~~~geD~Ry~~~r 87 (279)
|++.|.+..|||.+|-.-|
T Consensus 28 y~LaRMl~~GEDp~~IaRR 46 (201)
T 3bge_A 28 YWYARILTAGGDPLYVARR 46 (201)
T ss_dssp HHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHH
Confidence 3445556789999987665
No 10
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=8.29 E-value=4.6e+02 Score=20.11 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=9.9
Q ss_pred ccHHHHHHHHHHH-HhCCchhHHHHH
Q 023665 31 STNFIIIALLTLI-LKGSWHFRQVVL 55 (279)
Q Consensus 31 ~~~~~~~~~~~~~-~~~~~~~r~~l~ 55 (279)
+++++..+++... .++..+.++++=
T Consensus 65 ~l~pv~~~l~g~l~lgE~ls~~~~~G 90 (137)
T 2i68_A 65 GVGIVLISLLSWGFFGQRLDLPAIIG 90 (137)
T ss_dssp HHHHHHHHHHHHHHHC------CHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 5566665555433 455555555443
Done!