Query 023665
Match_columns 279
No_of_seqs 297 out of 1565
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 10:43:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023665.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023665hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e7la1 a.140.4.1 (A:104-157) 28.8 13 0.00093 23.1 1.7 12 172-183 2-13 (54)
2 d1rgoa2 g.66.1.1 (A:187-220) B 24.7 8.8 0.00064 21.6 0.4 13 170-182 1-13 (34)
3 d2c9wa1 a.271.1.1 (A:149-198) 15.3 37 0.0027 20.6 1.8 15 254-268 34-48 (50)
4 d3ctda1 a.80.1.2 (A:258-420) U 12.1 44 0.0032 25.2 1.8 20 68-87 22-41 (163)
5 d2e74f1 f.23.25.1 (F:1-32) Pet 10.9 1.2E+02 0.009 15.9 2.9 17 3-19 9-25 (32)
6 d3bgea1 a.80.1.2 (A:251-434) U 7.3 86 0.0062 23.9 1.8 20 68-87 24-43 (184)
7 d1vk5a_ a.220.1.1 (A:) Hypothe 6.6 92 0.0067 21.8 1.5 11 232-242 8-18 (121)
8 d1v8ha1 b.1.18.19 (A:2-107) Su 6.0 37 0.0027 23.7 -1.0 11 167-177 22-32 (106)
9 d2izva1 a.271.1.1 (A:386-429) 5.8 1.1E+02 0.0079 17.8 1.3 14 254-267 25-38 (44)
10 d1ng7a_ a.178.1.1 (A:) Soluble 5.7 1.3E+02 0.0091 18.7 1.6 18 231-248 31-48 (60)
No 1
>d1e7la1 a.140.4.1 (A:104-157) Recombination endonuclease VII, C-terminal and dimerization domains {Bacteriophage T4 [TaxId: 10665]}
Probab=28.83 E-value=13 Score=23.06 Aligned_cols=12 Identities=33% Similarity=0.673 Sum_probs=10.8
Q ss_pred CcchHHHHHHHH
Q 023665 172 HPNYFGEIFLWW 183 (279)
Q Consensus 172 HPnY~Ge~l~w~ 183 (279)
||||.++..=++
T Consensus 2 Hp~~~~D~~K~F 13 (54)
T d1e7la1 2 HPNFVGDKSKEF 13 (54)
T ss_dssp CTHHHHHHHHHH
T ss_pred CcchhhHHHHHH
Confidence 999999998876
No 2
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.71 E-value=8.8 Score=21.57 Aligned_cols=13 Identities=38% Similarity=0.613 Sum_probs=8.7
Q ss_pred ccCcchHHHHHHH
Q 023665 170 SRHPNYFGEIFLW 182 (279)
Q Consensus 170 sRHPnY~Ge~l~w 182 (279)
+|||.|--+++--
T Consensus 1 ~rhpkyKT~lC~~ 13 (34)
T d1rgoa2 1 TRHPKYKTELCRT 13 (34)
T ss_dssp CCCTTTTCSBCHH
T ss_pred CCCCCccchhccc
Confidence 5888886655543
No 3
>d2c9wa1 a.271.1.1 (A:149-198) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.27 E-value=37 Score=20.57 Aligned_cols=15 Identities=40% Similarity=0.383 Sum_probs=13.1
Q ss_pred CCcHHHHHHhhhccc
Q 023665 254 NLPWWLKTILFELPL 268 (279)
Q Consensus 254 ~~p~~~k~~~~~~~~ 268 (279)
.+|..+|+++-|+|.
T Consensus 34 PLP~~Lk~YL~eY~y 48 (50)
T d2c9wa1 34 PLPTRLKDYLEEYKF 48 (50)
T ss_dssp SSCHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHcCC
Confidence 589999999999884
No 4
>d3ctda1 a.80.1.2 (A:258-420) Uncharacterized protein YrvN {Prochlorococcus marinus [TaxId: 1219]}
Probab=12.08 E-value=44 Score=25.20 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=13.9
Q ss_pred HHHHHhhcCcCcchhhHHHH
Q 023665 68 LFLLMRILNWGEDRRFDEMR 87 (279)
Q Consensus 68 ~~l~~R~~~~geD~Ry~~~r 87 (279)
.|++.|.+..|||.+|-.-|
T Consensus 22 ly~larml~~Gedp~~i~RR 41 (163)
T d3ctda1 22 LYWLANMVEAGEDPNFIFRR 41 (163)
T ss_dssp HHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHH
Confidence 34455666789999986555
No 5
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.95 E-value=1.2e+02 Score=15.94 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023665 3 VCLQVGYQLLFFVITAL 19 (279)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (279)
+++.|++..++|.++..
T Consensus 9 a~lsfglifvgwglgal 25 (32)
T d2e74f1 9 ALLSFGLIFVGWGLGVL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhHHHHH
Confidence 56778888888877654
No 6
>d3bgea1 a.80.1.2 (A:251-434) Uncharacterized protein NTHI1458 {Haemophilus influenzae [TaxId: 727]}
Probab=7.34 E-value=86 Score=23.94 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=13.8
Q ss_pred HHHHHhhcCcCcchhhHHHH
Q 023665 68 LFLLMRILNWGEDRRFDEMR 87 (279)
Q Consensus 68 ~~l~~R~~~~geD~Ry~~~r 87 (279)
.|++.|.+..|||.+|-.-|
T Consensus 24 ly~larml~~GeDp~~i~RR 43 (184)
T d3bgea1 24 LYWYARILTAGGDPLYVARR 43 (184)
T ss_dssp HHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHH
Confidence 34455667789999886555
No 7
>d1vk5a_ a.220.1.1 (A:) Hypothetical protein At3g22680 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=6.61 E-value=92 Score=21.83 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=9.7
Q ss_pred hhHHHHHhhCC
Q 023665 232 PAYRLYKKTTS 242 (279)
Q Consensus 232 ~~Y~~Y~~~t~ 242 (279)
+.|++|+|+.|
T Consensus 8 emYQ~yMk~iP 18 (121)
T d1vk5a_ 8 EMYQDYMKQVP 18 (121)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHHHhCC
Confidence 78999999975
No 8
>d1v8ha1 b.1.18.19 (A:2-107) Sulfur oxidation protein SoxZ {Thermus thermophilus [TaxId: 274]}
Probab=6.05 E-value=37 Score=23.67 Aligned_cols=11 Identities=36% Similarity=0.443 Sum_probs=8.3
Q ss_pred cccccCcchHH
Q 023665 167 WKYSRHPNYFG 177 (279)
Q Consensus 167 y~~sRHPnY~G 177 (279)
=-.++|||..|
T Consensus 22 k~li~HPMeTG 32 (106)
T d1v8ha1 22 QVVAQHPNEPG 32 (106)
T ss_dssp EEEECCCCBCS
T ss_pred EEEEECCCccc
Confidence 34678999877
No 9
>d2izva1 a.271.1.1 (A:386-429) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.84 E-value=1.1e+02 Score=17.83 Aligned_cols=14 Identities=29% Similarity=0.242 Sum_probs=11.6
Q ss_pred CCcHHHHHHhhhcc
Q 023665 254 NLPWWLKTILFELP 267 (279)
Q Consensus 254 ~~p~~~k~~~~~~~ 267 (279)
.+|..+|+++-|++
T Consensus 25 PLP~~Lk~yLkeyh 38 (44)
T d2izva1 25 PIPSSMKLYLKEYH 38 (44)
T ss_dssp SSCHHHHHHHTSSE
T ss_pred CCCHHHHHHHHhcc
Confidence 47889999888876
No 10
>d1ng7a_ a.178.1.1 (A:) Soluble domain of poliovirus core protein 3a {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
Probab=5.74 E-value=1.3e+02 Score=18.68 Aligned_cols=18 Identities=11% Similarity=0.145 Sum_probs=14.8
Q ss_pred chhHHHHHhhCCcccccC
Q 023665 231 MPAYRLYKKTTSPLIPLP 248 (279)
Q Consensus 231 ~~~Y~~Y~~~t~~~iP~~ 248 (279)
.++=++||++.+-+||-+
T Consensus 31 SeEVReYCk~kgWii~~~ 48 (60)
T d1ng7a_ 31 SQEVRDYCEKKGWIVNIT 48 (60)
T ss_dssp CHHHHHHHHHHTCCCCCC
T ss_pred cHHHHHHHHHCCeeecCC
Confidence 478899999999888643
Done!