BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023668
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EKJ|A Chain A, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|B Chain B, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|C Chain C, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|D Chain D, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|E Chain E, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|F Chain F, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|G Chain G, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|H Chain H, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
Length = 221
Score = 325 bits (833), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 149/210 (70%), Positives = 174/210 (82%)
Query: 70 DPAERMKTGFIQFRTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAF 129
+ +ER+KTGF+ F+ EKY+KNP LYG LAKGQSP F+VFACSDSRVCPSH+L+FQPGEAF
Sbjct: 12 EASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAF 71
Query: 130 MVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTA 189
+VRN+AN+VPPYDQ KY+G GAAIEYAVLHLKV NIVVIGHS CGGIKGL+S P +GT +
Sbjct: 72 VVRNVANLVPPYDQAKYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYS 131
Query: 190 SDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNT 249
+DFIEEWVKI AK+KVK + D F E C +CEKEAVN SLGNLLTYPFVRE +V T
Sbjct: 132 TDFIEEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNASLGNLLTYPFVREGLVNKT 191
Query: 250 LALKGAHYDFVNGKFELWDLDFNILPSVSV 279
LALKG +YDFV G FELW L+F + + SV
Sbjct: 192 LALKGGYYDFVKGSFELWGLEFGLSSTFSV 221
>pdb|3E3G|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3I|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|G Chain G, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|H Chain H, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|I Chain I, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|J Chain J, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|K Chain K, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|L Chain L, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
Length = 229
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 100/216 (46%), Gaps = 38/216 (17%)
Query: 53 KIKQITADLEAAGSRDIDPAERMKTGFIQFRTEKYEKNPDLYGALAKGQSPKFLVFACSD 112
KIKQ+ A+ + A+RMK E+N + LA Q+P +L ACSD
Sbjct: 3 KIKQLFAN-------NYSWAQRMK-----------EENSTYFKELADHQTPHYLWIACSD 44
Query: 113 SRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSC 172
SRV + N +PGE F+ RN+AN V D S ++YAV LK+E+I++ GH+
Sbjct: 45 SRVPAEKLTNLEPGELFVHRNVANQVIHTDFNCLS----VVQYAVDVLKIEHIIICGHTN 100
Query: 173 CGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSL 232
CGGI M+ D G I W+ K LS E++ K +NV+
Sbjct: 101 CGGIHAAMADKDLG-----LINNWLLHIRDIWFKHGHLLGKLSPEKRADMLTK--INVAE 153
Query: 233 GNLLTYPFVRESVVKNT------LALKGAHYDFVNG 262
Y R S+VK+ L+L G YD +G
Sbjct: 154 Q---VYNLGRTSIVKSAWERGQKLSLHGWVYDVNDG 186
>pdb|3E24|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f
pdb|3E24|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f
Length = 229
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 99/216 (45%), Gaps = 38/216 (17%)
Query: 53 KIKQITADLEAAGSRDIDPAERMKTGFIQFRTEKYEKNPDLYGALAKGQSPKFLVFACSD 112
KIKQ+ A+ + A+RMK E+N + LA Q+P +L CSD
Sbjct: 3 KIKQLFAN-------NYSWAQRMK-----------EENSTYFKELADHQTPHYLFIGCSD 44
Query: 113 SRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSC 172
SRV + N +PGE F+ RN+AN V D S ++YAV LK+E+I++ GH+
Sbjct: 45 SRVPAEKLTNLEPGELFVHRNVANQVIHTDFNCLS----VVQYAVDVLKIEHIIICGHTN 100
Query: 173 CGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSL 232
CGGI M+ D G I W+ K LS E++ K +NV+
Sbjct: 101 CGGIHAAMADKDLG-----LINNWLLHIRDIWFKHGHLLGKLSPEKRADMLTK--INVAE 153
Query: 233 GNLLTYPFVRESVVKNT------LALKGAHYDFVNG 262
Y R S+VK+ L+L G YD +G
Sbjct: 154 Q---VYNLGRTSIVKSAWERGQKLSLHGWVYDVNDG 186
>pdb|3MF3|A Chain A, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|B Chain B, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|C Chain C, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|D Chain D, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|E Chain E, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|F Chain F, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
Length = 221
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 99/216 (45%), Gaps = 38/216 (17%)
Query: 53 KIKQITADLEAAGSRDIDPAERMKTGFIQFRTEKYEKNPDLYGALAKGQSPKFLVFACSD 112
KIKQ+ A+ + A+RMK E+N + LA Q+P +L CSD
Sbjct: 3 KIKQLFAN-------NYSWAQRMK-----------EENSTYFKELADHQTPHYLWIGCSD 44
Query: 113 SRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSC 172
SRV + N +PGE F+ RN+AN V D S ++YAV LK+E+I++ GH+
Sbjct: 45 SRVPAEKLTNLEPGELFVHRNVANQVIHTDFNCLS----VVQYAVDVLKIEHIIICGHTN 100
Query: 173 CGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSL 232
CGGI M+ D G I W+ K LS E++ K +NV+
Sbjct: 101 CGGIHAAMADKDLG-----LINNWLLHIRDIWFKHGHLLGKLSPEKRADMLTK--INVAE 153
Query: 233 GNLLTYPFVRESVVKNT------LALKGAHYDFVNG 262
Y R S+VK+ L+L G YD +G
Sbjct: 154 Q---VYNLGRTSIVKSAWERGQKLSLHGWVYDVNDG 186
>pdb|2A8C|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|B Chain B, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|C Chain C, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|D Chain D, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|E Chain E, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|F Chain F, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8D|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|B Chain B, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|C Chain C, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|D Chain D, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|E Chain E, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|F Chain F, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
Length = 229
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 99/216 (45%), Gaps = 38/216 (17%)
Query: 53 KIKQITADLEAAGSRDIDPAERMKTGFIQFRTEKYEKNPDLYGALAKGQSPKFLVFACSD 112
KIKQ+ A+ + A+RMK E+N + LA Q+P +L CSD
Sbjct: 3 KIKQLFAN-------NYSWAQRMK-----------EENSTYFKELADHQTPHYLWIGCSD 44
Query: 113 SRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSC 172
SRV + N +PGE F+ RN+AN V D S ++YAV LK+E+I++ GH+
Sbjct: 45 SRVPAEKLTNLEPGELFVHRNVANQVIHTDFNCLS----VVQYAVDVLKIEHIIICGHTN 100
Query: 173 CGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSL 232
CGGI M+ D G I W+ K LS E++ K +NV+
Sbjct: 101 CGGIHAAMADKDLG-----LINNWLLHIRDIWFKHGHLLGKLSPEKRADMLTK--INVAE 153
Query: 233 GNLLTYPFVRESVVKNT------LALKGAHYDFVNG 262
Y R S+VK+ L+L G YD +G
Sbjct: 154 Q---VYNLGRTSIVKSAWERGQKLSLHGWVYDVNDG 186
>pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
pdb|1DDZ|B Chain B, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
Length = 496
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 96/192 (50%), Gaps = 23/192 (11%)
Query: 82 FRTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPY 141
+R E +++P+ + LA GQSP++L C+DSRV + +L+ GE F+ RNIAN
Sbjct: 46 WRQEMLKQDPEFFNRLANGQSPEYLWIGCADSRVPANQLLDLPAGEVFVHRNIANQCIHS 105
Query: 142 DQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICS 201
D S ++YAV +LKV++I+V GH CGG K + G + I+ W++
Sbjct: 106 DISFLS----VLQYAVQYLKVKHILVCGHYGCGGAKAAL-----GDSRLGLIDNWLRHIR 156
Query: 202 SAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLL--TYPFVRESVVKNT------LALK 253
+ K + ++CK+ ++E + N+L + S+V++ L ++
Sbjct: 157 DVRRMNAK------YLDKCKDGDEELNRLIELNVLEQVHNVCATSIVQDAWDAGQELTVQ 210
Query: 254 GAHYDFVNGKFE 265
G Y +GK
Sbjct: 211 GVVYGVGDGKLR 222
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 44 SDLEGIAAAKIKQITADLEAAGSRDIDPAERMKTGFIQFRTEKYEKNPDLYGALAKGQSP 103
S +E + A ++Q L+ + A R+ +R + +++P + LA Q+P
Sbjct: 269 STMEKLTAELVQQTPGKLK-------EGANRVFVNNENWRQKMLKQDPQFFSNLAHTQTP 321
Query: 104 KFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVE 163
+ L C+DSRV + I+N GE F+ RNIAN D S ++YAV +LKV+
Sbjct: 322 EILWIGCADSRVPANQIINLPAGEVFVHRNIANQCIHSDMSFLS----VLQYAVQYLKVK 377
Query: 164 NIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLS 215
+VV GH CGG + G + I+ W++ + + E + ++
Sbjct: 378 RVVVCGHYACGGCAAAL-----GDSRLGLIDNWLRHIRDVRRHNQAELSRIT 424
>pdb|3QY1|A Chain A, 1.54a Resolution Crystal Structure Of A Beta-Carbonic
Anhydrase From Salmonella Enterica Subsp. Enterica
Serovar Typhimurium Str. Lt2
pdb|3QY1|B Chain B, 1.54a Resolution Crystal Structure Of A Beta-Carbonic
Anhydrase From Salmonella Enterica Subsp. Enterica
Serovar Typhimurium Str. Lt2
Length = 223
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 9/110 (8%)
Query: 88 EKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYS 147
E++P + LA+ Q P+FL CSDSRV + +PGE F+ RN+AN+V D S
Sbjct: 23 EEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLS 82
Query: 148 GAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWV 197
++YAV L+VE+I++ GHS CGGIK + P+ G I W+
Sbjct: 83 ----VVQYAVDVLEVEHIIICGHSGCGGIKAAVENPELG-----LINNWL 123
>pdb|3E28|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|C Chain C, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|D Chain D, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|E Chain E, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|F Chain F, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E2A|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2W|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
Length = 229
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 99/216 (45%), Gaps = 38/216 (17%)
Query: 53 KIKQITADLEAAGSRDIDPAERMKTGFIQFRTEKYEKNPDLYGALAKGQSPKFLVFACSD 112
KIKQ+ A+ + A+RMK E+N + LA Q+P +L CSD
Sbjct: 3 KIKQLFAN-------NYSWAQRMK-----------EENSTYFKELADHQTPHYLWIGCSD 44
Query: 113 SRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSC 172
SRV + N +PGE F+ RN+AN V D S ++YAV LK+E+I++ GH+
Sbjct: 45 SRVPAEKLTNLEPGELFVHRNVANQVIHTDFNCLS----VVQYAVDVLKIEHIIICGHTN 100
Query: 173 CGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSL 232
CGGI M+ D G I W+ K LS E++ K +NV+
Sbjct: 101 CGGIHAAMADKDLG-----LINNWLLHIRDIWFKHGHLLGKLSPEKRADMLTK--INVAE 153
Query: 233 GNLLTYPFVRESVVKNT------LALKGAHYDFVNG 262
Y R S+VK+ L+L G +D +G
Sbjct: 154 Q---VYNLGRTSIVKSAWERGQKLSLHGWVFDVNDG 186
>pdb|3E2X|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E2X|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E31|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E31|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E3F|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant V47a With
100 Mm Bicarbonate
pdb|3E3F|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant V47a With
100 Mm Bicarbonate
Length = 229
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 98/216 (45%), Gaps = 38/216 (17%)
Query: 53 KIKQITADLEAAGSRDIDPAERMKTGFIQFRTEKYEKNPDLYGALAKGQSPKFLVFACSD 112
KIKQ+ A+ + A+RMK E+N + LA Q+P +L CSD
Sbjct: 3 KIKQLFAN-------NYSWAQRMK-----------EENSTYFKELADHQTPHYLWIGCSD 44
Query: 113 SRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSC 172
SR + N +PGE F+ RN+AN V D S ++YAV LK+E+I++ GH+
Sbjct: 45 SRAPAEKLTNLEPGELFVHRNVANQVIHTDFNCLS----VVQYAVDVLKIEHIIICGHTN 100
Query: 173 CGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSL 232
CGGI M+ D G I W+ K LS E++ K +NV+
Sbjct: 101 CGGIHAAMADKDLG-----LINNWLLHIRDIWFKHGHLLGKLSPEKRADMLTK--INVAE 153
Query: 233 GNLLTYPFVRESVVKNT------LALKGAHYDFVNG 262
Y R S+VK+ L+L G YD +G
Sbjct: 154 Q---VYNLGRTSIVKSAWERGQKLSLHGWVYDVNDG 186
>pdb|3E1V|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n
pdb|3E1V|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n
pdb|3E1W|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant D44n In 100
Mm Sodium Bicarbonate
pdb|3E1W|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant D44n In 100
Mm Sodium Bicarbonate
Length = 229
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 99/216 (45%), Gaps = 38/216 (17%)
Query: 53 KIKQITADLEAAGSRDIDPAERMKTGFIQFRTEKYEKNPDLYGALAKGQSPKFLVFACSD 112
KIKQ+ A+ + A+RMK E+N + LA Q+P +L CS+
Sbjct: 3 KIKQLFAN-------NYSWAQRMK-----------EENSTYFKELADHQTPHYLWIGCSN 44
Query: 113 SRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSC 172
SRV + N +PGE F+ RN+AN V D S ++YAV LK+E+I++ GH+
Sbjct: 45 SRVPAEKLTNLEPGELFVHRNVANQVIHTDFNCLS----VVQYAVDVLKIEHIIICGHTN 100
Query: 173 CGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSL 232
CGGI M+ D G I W+ K LS E++ K +NV+
Sbjct: 101 CGGIHAAMADKDLG-----LINNWLLHIRDIWFKHGHLLGKLSPEKRADMLTK--INVAE 153
Query: 233 GNLLTYPFVRESVVKNT------LALKGAHYDFVNG 262
Y R S+VK+ L+L G YD +G
Sbjct: 154 Q---VYNLGRTSIVKSAWERGQKLSLHGWVYDVNDG 186
>pdb|1I6O|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
pdb|1I6O|B Chain B, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
Length = 220
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 9/110 (8%)
Query: 88 EKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYS 147
E++P + LA+ Q P+FL CSDSRV + +PGE F+ RN+AN+V D S
Sbjct: 20 EEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLS 79
Query: 148 GAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWV 197
++YAV L+VE+I++ GH CGG++ + P+ G I W+
Sbjct: 80 ----VVQYAVDVLEVEHIIICGHYGCGGVQAAVENPELG-----LINNWL 120
>pdb|1I6P|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
pdb|1T75|A Chain A, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|B Chain B, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|D Chain D, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|E Chain E, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|2ESF|A Chain A, Identification Of A Novel Non-catalytic Bicarbonate
Binding Site In Eubacterial Beta-carbonic Anhydrase
pdb|2ESF|B Chain B, Identification Of A Novel Non-catalytic Bicarbonate
Binding Site In Eubacterial Beta-carbonic Anhydrase
Length = 220
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 9/110 (8%)
Query: 88 EKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYS 147
E++P + LA+ Q P+FL CSDSRV + +PGE F+ RN+AN+V D S
Sbjct: 20 EEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLS 79
Query: 148 GAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWV 197
++YAV L+VE+I++ GH CGG++ + P+ G I W+
Sbjct: 80 ----VVQYAVDVLEVEHIIICGHYGCGGVQAAVENPELG-----LINNWL 120
>pdb|3UCJ|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Acetazolamide
pdb|3UCJ|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Acetazolamide
pdb|3UCK|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Phosphate
pdb|3UCK|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Phosphate
pdb|3UCM|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Thiocyanate
pdb|3UCM|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Thiocyanate
pdb|3UCN|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Azide
pdb|3UCN|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With Azide
pdb|3UCO|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Iodide
pdb|3UCO|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With Iodide
Length = 227
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 6/164 (3%)
Query: 81 QFRTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPP 140
++ E K+ + +A Q+P++L C+DSRV P+ + N PGE F+ RN+ N+V
Sbjct: 18 KWADECAAKDSTYFSKVAGSQAPEYLYIGCADSRVSPAQLFNMAPGEVFVQRNVGNLVSN 77
Query: 141 YDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIK-GLMSIPDNGTTASDFIEEWVKI 199
D S +EY V HLK+++I+V GH CG K GL+ P + +I + ++
Sbjct: 78 KDLNCMS----CLEYTVDHLKIKHILVCGHYNCGACKAGLVWHPKTAGVTNLWISDVREV 133
Query: 200 CSSAKSKVKKECNDLSFEEQCK-NCEKEAVNVSLGNLLTYPFVR 242
+K+ D ++++ + N E + NV ++ + R
Sbjct: 134 RDKNAAKLHGLSADDAWDKMVELNVEAQVFNVCASPIVQAAWAR 177
>pdb|1YM3|A Chain A, Crystal Structure Of Carbonic Anhydrase Rv3588c From
Mycobacterium Tuberculosis
Length = 215
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 92/196 (46%), Gaps = 13/196 (6%)
Query: 79 FIQFRTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMV 138
F+ R + ++ D LA GQ P ++F C+DSRV I + G+ F+VR +++
Sbjct: 28 FVAGRPQHPSQSVDHRAGLAAGQKPTAVIFGCADSRVAAEIIFDQGLGDMFVVRTAGHVI 87
Query: 139 PPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVK 198
S +IEYAV L V IVV+GH CG + ++ ++GT ++ + V+
Sbjct: 88 D-------SAVLGSIEYAVTVLNVPLIVVLGHDSCGAVNAALAAINDGTLPGGYVRDVVE 140
Query: 199 ICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTY-PFVRESVVKNTLALKGAHY 257
A S + + LS + E+ V+ ++ L+ + E + +LA+ G Y
Sbjct: 141 --RVAPSVLLGRRDGLS---RVDEFEQRHVHETVAILMARSSAISERIAGGSLAIVGVTY 195
Query: 258 DFVNGKFELWDLDFNI 273
+G+ L D NI
Sbjct: 196 QLDDGRAVLRDHIGNI 211
>pdb|2A5V|A Chain A, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|B Chain B, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|C Chain C, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|D Chain D, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
Length = 213
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 92/196 (46%), Gaps = 13/196 (6%)
Query: 79 FIQFRTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMV 138
F+ R + ++ D LA GQ P ++F C+DSRV I + G+ F+VR +++
Sbjct: 26 FVAGRPQHPSQSVDHRAGLAAGQKPTAVIFGCADSRVAAEIIFDQGLGDMFVVRTAGHVI 85
Query: 139 PPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVK 198
S +IEYAV L V IVV+GH CG + ++ ++GT ++ + V+
Sbjct: 86 D-------SAVLGSIEYAVTVLNVPLIVVLGHDSCGAVNAALAAINDGTLPGGYVRDVVE 138
Query: 199 ICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTY-PFVRESVVKNTLALKGAHY 257
A S + + LS + E+ V+ ++ L+ + E + +LA+ G Y
Sbjct: 139 --RVAPSVLLGRRDGLS---RVDEFEQRHVHETVAILMARSSAISERIAGGSLAIVGVTY 193
Query: 258 DFVNGKFELWDLDFNI 273
+G+ L D NI
Sbjct: 194 QLDDGRAVLRDHIGNI 209
>pdb|2W3Q|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
Length = 243
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 13/147 (8%)
Query: 89 KNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSG 148
+ P+ KGQ+P FL C+DSRV I+ +PG+ F+ RN+AN P D
Sbjct: 51 EEPEFMAEQVKGQAPNFLWIGCADSRVPEVTIMARKPGDVFVQRNVANQFKPED----DS 106
Query: 149 AGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIP------DNGTTASDFIEEWVKICSS 202
+ A + YA++++ V +++V+GH+ CGG P GT ++E +++ S
Sbjct: 107 SQALLNYAIMNVGVTHVMVVGHTGCGGCIAAFDQPLPTEENPGGTPLVRYLEPIIRLKHS 166
Query: 203 AKSKVKKECNDLSFEEQCKNCEKEAVN 229
+ NDL +E K K VN
Sbjct: 167 LPE--GSDVNDL-IKENVKMAVKNVVN 190
>pdb|2W3N|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
pdb|2W3N|B Chain B, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
pdb|2W3N|C Chain C, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
Length = 239
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 13/147 (8%)
Query: 89 KNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSG 148
+ P+ KGQ+P FL C+DSRV I+ +PG+ F+ RN+AN P D
Sbjct: 47 EEPEFMAEQVKGQAPNFLWIGCADSRVPEVTIMARKPGDVFVQRNVANQFKPED----DS 102
Query: 149 AGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIP------DNGTTASDFIEEWVKICSS 202
+ A + YA++++ V +++V+GH+ CGG P GT ++E +++ S
Sbjct: 103 SQALLNYAIMNVGVTHVMVVGHTGCGGCIAAFDQPLPTEENPGGTPLVRYLEPIIRLKHS 162
Query: 203 AKSKVKKECNDLSFEEQCKNCEKEAVN 229
+ NDL +E K K VN
Sbjct: 163 LPE--GSDVNDL-IKENVKMAVKNVVN 186
>pdb|3EYX|A Chain A, Crystal Structure Of Carbonic Anhydrase Nce103 From
Saccharomyces Cerevisiae
pdb|3EYX|B Chain B, Crystal Structure Of Carbonic Anhydrase Nce103 From
Saccharomyces Cerevisiae
Length = 216
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 98 AKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAV 157
AKGQSP L CSDSR + L PGE F +N+AN+ D A +E+A+
Sbjct: 40 AKGQSPHTLFIGCSDSRY-NENCLGVLPGEVFTWKNVANICHSEDLT----LKATLEFAI 94
Query: 158 LHLKVENIVVIGHSCCGGIKGLMS 181
+ LKV +++ GH+ CGGIK ++
Sbjct: 95 ICLKVNKVIICGHTDCGGIKTCLT 118
>pdb|1G5C|A Chain A, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|B Chain B, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|C Chain C, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|D Chain D, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|E Chain E, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|F Chain F, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
Length = 170
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 101 QSPKFLVFACSDSRVCP--SHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVL 158
SPK + C DSR+ L G+A +++N N+V D A AI YA
Sbjct: 23 HSPKLCIITCMDSRLIDLLERALGIGRGDAKVIKNAGNIV---DDGVIRSAAVAI-YA-- 76
Query: 159 HLKVENIVVIGHSCCG 174
L I+++GH+ CG
Sbjct: 77 -LGDNEIIIVGHTDCG 91
>pdb|3TEO|A Chain A, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|B Chain B, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|C Chain C, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|D Chain D, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|E Chain E, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|F Chain F, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|G Chain G, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|H Chain H, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|I Chain I, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|J Chain J, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|K Chain K, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|L Chain L, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|M Chain M, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|N Chain N, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|O Chain O, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|P Chain P, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
Length = 204
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 104 KFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVL---HL 160
+ V C D RV L QP +A + RN +V AI A L
Sbjct: 29 RLWVLTCXDERVHIEQSLGIQPDDAHIYRNAGGIV----------TDDAIRSASLTTNFF 78
Query: 161 KVENIVVIGHSCCGGIK 177
+ I+V+ H+ CG ++
Sbjct: 79 GTKEIIVVTHTDCGXLR 95
>pdb|3TEN|A Chain A, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|B Chain B, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|C Chain C, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|D Chain D, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|E Chain E, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|F Chain F, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|G Chain G, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|H Chain H, Holo Form Of Carbon Disulfide Hydrolase
Length = 204
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 104 KFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVL---HL 160
+ V C D RV L QP +A + RN +V AI A L
Sbjct: 29 RLWVLTCMDERVHIEQSLGIQPDDAHIYRNAGGIV----------TDDAIRSASLTTNFF 78
Query: 161 KVENIVVIGHSCCGGIK 177
+ I+V+ H+ CG ++
Sbjct: 79 GTKEIIVVTHTDCGMLR 95
>pdb|3VQJ|A Chain A, Crystal Structutre Of Thiobacillus Thioparus Thi115
Carbonyl Sulfide Hydrolase
pdb|3VRK|A Chain A, Crystal Structutre Of Thiobacillus Thioparus Thi115
Carbonyl Sulfide Hydrolase / Thiocyanate Complex
Length = 219
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 102 SPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMV 138
S + V AC D+R+ +L Q GEA ++RN ++
Sbjct: 36 SRRVAVVACMDARLDVEDLLGLQTGEAHIIRNAGGVI 72
>pdb|1YLK|A Chain A, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
pdb|1YLK|B Chain B, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
pdb|1YLK|C Chain C, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
pdb|1YLK|D Chain D, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
Length = 172
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 66/170 (38%), Gaps = 31/170 (18%)
Query: 95 GALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIE 154
G L S + AC D+R+ +L + GEA ++RN +V ++
Sbjct: 29 GPLPMPPSKHIAIVACMDARLDVYRMLGIKEGEAHVIRNAGCVV-------TDDVIRSLA 81
Query: 155 YAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDL 214
+ L I+++ H+ CG + F ++ K ++ ++ +
Sbjct: 82 ISQRLLGTREIILLHHTDCGMLT--------------FTDDDFKRAIQDETGIRPTWSPE 127
Query: 215 SFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKF 264
S+ + E V SL + PF V K+T +L+G +D GK
Sbjct: 128 SYPDAV-----EDVRQSLRRIEVNPF----VTKHT-SLRGFVFDVATGKL 167
>pdb|3QVM|A Chain A, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
pdb|3QVM|B Chain B, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
Length = 282
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 141 YDQKKYS---GAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWV 197
+ K+YS G +E ++ L + N+ +IGHS I G+ S T D I +
Sbjct: 73 FSTKRYSSLEGYAKDVEEILVALDLVNVSIIGHSVSSIIAGIAS-----THVGDRISDIT 127
Query: 198 KICSS 202
IC S
Sbjct: 128 XICPS 132
>pdb|2GDR|A Chain A, Crystal Structure Of A Bacterial Glutathione Transferase
pdb|2GDR|B Chain B, Crystal Structure Of A Bacterial Glutathione Transferase
pdb|2GDR|C Chain C, Crystal Structure Of A Bacterial Glutathione Transferase
pdb|2GDR|D Chain D, Crystal Structure Of A Bacterial Glutathione Transferase
pdb|2GDR|E Chain E, Crystal Structure Of A Bacterial Glutathione Transferase
pdb|2GDR|F Chain F, Crystal Structure Of A Bacterial Glutathione Transferase
Length = 202
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 28/60 (46%)
Query: 176 IKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNL 235
+ G P NG+ +++W+ SS K + + ++ KN ++++N LG +
Sbjct: 77 VPGKQLAPANGSFERYHLQQWLNFISSELHKSFSPLFNPASSDEWKNAVRQSLNTRLGQV 136
>pdb|2DSA|A Chain A, Ternary Complex Of Bphk, A Bacterial Gst
pdb|2DSA|B Chain B, Ternary Complex Of Bphk, A Bacterial Gst
pdb|2DSA|C Chain C, Ternary Complex Of Bphk, A Bacterial Gst
pdb|2DSA|D Chain D, Ternary Complex Of Bphk, A Bacterial Gst
Length = 203
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 28/60 (46%)
Query: 176 IKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNL 235
+ G P NG+ +++W+ SS K + + ++ KN ++++N LG +
Sbjct: 77 VPGKQLAPANGSFERYHLQQWLNFISSELHKSFSPLFNPASSDEWKNAVRQSLNTRLGQV 136
>pdb|3OMB|A Chain A, Crystal Structure Of Extracellular Solute-Binding Protein
From Bifidobacterium Longum Subsp. Infantis
Length = 535
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 27/194 (13%)
Query: 16 KSPVAREDMANDAYEDAIAGLTKLLSEKSDLEGIAAAKIKQITADLEAAGSRDIDPAERM 75
K+ V + + +D Y++ I KL+S EG+ A+ T D +A + I +
Sbjct: 251 KNGVVKSFLTSDEYKEVIKYYHKLIS-----EGLIPAEW--ATKDDDAYNADQISDGKTA 303
Query: 76 KTG--FIQFRTEKYEKNPDLYGAL----AKGQSPKFLVFACSDSRVCPSHI-LNFQPGEA 128
KTG F ++ + K D Y A A G SP V+ S S + P+ + ++
Sbjct: 304 KTGVVFGWSPSDNFGKLKDQYIAXPVPSAPGVSPDQTVWDGSSSELSPAGLSISSHAANK 363
Query: 129 FMVRNIANMV--PPYDQKKYSGA-GAAI------EYAVLHLKVENIVVIGHSCCGGIKGL 179
+AN++ Y +++ G+ G AI EY V + K+ + G + G+ L
Sbjct: 364 DAALKLANLLYSEKYSVQQFLGSFGKAITKTGEHEYTVDNDKLSQLT--GDNQYPGLSEL 421
Query: 180 M--SIPDNGTTASD 191
+ IPD T D
Sbjct: 422 LVGWIPDEATIKGD 435
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 115 VCPSHILNFQPGEAFMVRNIANMVPPYDQKK 145
+C H+ F G+ V AN +P Y+Q+K
Sbjct: 47 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQK 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,093,386
Number of Sequences: 62578
Number of extensions: 314720
Number of successful extensions: 882
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 827
Number of HSP's gapped (non-prelim): 42
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)